Query 011374
Match_columns 487
No_of_seqs 411 out of 3174
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 00:38:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 6E-103 1E-107 793.2 37.0 438 13-463 2-445 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 1.4E-41 3E-46 335.5 17.8 214 208-434 145-367 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 9.4E-38 2E-42 328.1 18.2 215 203-433 422-646 (693)
4 KOG0734 AAA+-type ATPase conta 100.0 3.5E-37 7.6E-42 315.3 15.5 206 211-433 301-515 (752)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 1.1E-35 2.4E-40 308.4 18.8 221 210-451 507-740 (802)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 1.2E-34 2.5E-39 301.0 19.1 220 211-447 187-417 (802)
7 KOG0727 26S proteasome regulat 100.0 1.4E-34 2.9E-39 273.4 15.9 211 211-434 152-371 (408)
8 KOG0731 AAA+-type ATPase conta 100.0 2.9E-34 6.4E-39 309.9 19.7 212 209-433 306-527 (774)
9 KOG0736 Peroxisome assembly fa 100.0 1.1E-33 2.5E-38 299.9 17.7 209 211-432 669-888 (953)
10 KOG0726 26S proteasome regulat 100.0 1.1E-33 2.3E-38 271.9 8.6 212 209-433 180-400 (440)
11 PTZ00454 26S protease regulato 100.0 3.6E-32 7.8E-37 282.6 20.4 213 208-433 139-360 (398)
12 KOG0738 AAA+-type ATPase [Post 100.0 3.1E-32 6.7E-37 270.8 15.5 222 208-450 205-438 (491)
13 KOG0728 26S proteasome regulat 100.0 1.1E-32 2.5E-37 260.1 11.3 213 209-434 142-363 (404)
14 KOG0652 26S proteasome regulat 100.0 9.1E-32 2E-36 255.3 13.2 216 205-433 162-386 (424)
15 COG0465 HflB ATP-dependent Zn 100.0 1.5E-31 3.2E-36 284.7 15.0 232 209-454 145-399 (596)
16 TIGR03689 pup_AAA proteasome A 100.0 6.4E-31 1.4E-35 278.7 17.1 182 209-405 177-380 (512)
17 PRK03992 proteasome-activating 100.0 1.9E-30 4.1E-35 270.3 20.3 212 209-433 126-346 (389)
18 TIGR01243 CDC48 AAA family ATP 100.0 3.8E-30 8.2E-35 288.2 21.4 220 210-449 449-677 (733)
19 TIGR01241 FtsH_fam ATP-depende 100.0 4.8E-30 1E-34 275.5 21.0 212 208-433 49-269 (495)
20 PTZ00361 26 proteosome regulat 100.0 2.7E-30 5.8E-35 270.4 18.3 214 207-433 176-398 (438)
21 KOG0735 AAA+-type ATPase [Post 100.0 2.2E-30 4.7E-35 272.8 17.0 233 200-453 651-894 (952)
22 CHL00195 ycf46 Ycf46; Provisio 100.0 1.2E-29 2.5E-34 269.3 19.0 204 210-433 224-438 (489)
23 COG1223 Predicted ATPase (AAA+ 100.0 1.4E-29 3E-34 240.5 16.4 205 209-434 116-329 (368)
24 KOG0729 26S proteasome regulat 100.0 4.3E-30 9.4E-35 244.5 11.3 217 203-434 166-393 (435)
25 COG0464 SpoVK ATPases of the A 100.0 5.6E-29 1.2E-33 267.5 20.5 214 204-433 231-456 (494)
26 CHL00176 ftsH cell division pr 100.0 8.8E-29 1.9E-33 270.1 20.2 212 208-433 177-397 (638)
27 KOG0739 AAA+-type ATPase [Post 100.0 5.2E-30 1.1E-34 247.3 9.1 208 207-432 125-343 (439)
28 KOG0737 AAA+-type ATPase [Post 100.0 1E-28 2.2E-33 245.7 15.3 221 211-452 89-319 (386)
29 PLN00020 ribulose bisphosphate 100.0 3.2E-28 6.8E-33 244.6 17.7 208 208-432 109-339 (413)
30 KOG0651 26S proteasome regulat 100.0 7.4E-29 1.6E-33 240.7 9.5 208 212-434 130-348 (388)
31 TIGR01242 26Sp45 26S proteasom 100.0 1.4E-27 3E-32 247.1 17.5 213 208-433 116-337 (364)
32 PF14363 AAA_assoc: Domain ass 100.0 8E-28 1.7E-32 202.3 11.9 97 35-132 1-98 (98)
33 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.8E-27 3.9E-32 273.0 17.7 178 236-433 1618-1851(2281)
34 PRK10733 hflB ATP-dependent me 99.9 1.9E-26 4.1E-31 254.0 20.5 210 210-433 148-366 (644)
35 TIGR01243 CDC48 AAA family ATP 99.9 2.3E-25 4.9E-30 249.8 20.4 208 210-433 174-390 (733)
36 KOG0732 AAA+-type ATPase conta 99.9 2.7E-25 5.8E-30 246.3 17.3 209 208-432 259-482 (1080)
37 KOG0730 AAA+-type ATPase [Post 99.9 2.6E-24 5.6E-29 227.0 17.8 206 209-433 180-395 (693)
38 KOG0740 AAA+-type ATPase [Post 99.9 1.2E-24 2.6E-29 223.6 13.7 208 210-434 149-366 (428)
39 KOG0741 AAA+-type ATPase [Post 99.9 4.8E-24 1E-28 219.0 12.2 212 208-433 212-449 (744)
40 KOG0742 AAA+-type ATPase [Post 99.9 9.3E-21 2E-25 189.9 16.4 223 157-405 296-530 (630)
41 PF05496 RuvB_N: Holliday junc 99.8 1.1E-19 2.3E-24 172.5 17.9 190 208-432 18-222 (233)
42 PF00004 AAA: ATPase family as 99.8 2E-20 4.4E-25 164.1 9.6 123 251-389 1-132 (132)
43 KOG0744 AAA+-type ATPase [Post 99.8 6E-19 1.3E-23 172.8 9.9 179 212-404 140-341 (423)
44 PRK00080 ruvB Holliday junctio 99.8 8E-18 1.7E-22 171.9 18.6 190 208-432 19-223 (328)
45 TIGR02881 spore_V_K stage V sp 99.8 1.9E-17 4.1E-22 163.8 19.1 179 213-416 5-204 (261)
46 PF05673 DUF815: Protein of un 99.8 5.2E-17 1.1E-21 156.2 20.1 180 199-411 12-215 (249)
47 TIGR00635 ruvB Holliday juncti 99.7 3.4E-17 7.3E-22 165.3 17.8 186 212-432 2-202 (305)
48 CHL00181 cbbX CbbX; Provisiona 99.7 5E-17 1.1E-21 162.8 17.2 176 214-413 23-219 (287)
49 TIGR02880 cbbX_cfxQ probable R 99.7 1.9E-17 4.2E-22 165.7 14.1 177 213-413 20-218 (284)
50 COG2255 RuvB Holliday junction 99.7 2E-16 4.4E-21 153.2 16.1 189 208-431 20-223 (332)
51 TIGR00763 lon ATP-dependent pr 99.7 3.2E-16 6.9E-21 176.8 19.5 162 212-404 317-506 (775)
52 PRK04195 replication factor C 99.7 4.2E-16 9.2E-21 167.2 18.8 166 207-411 7-181 (482)
53 PRK14956 DNA polymerase III su 99.7 4.5E-16 9.8E-21 163.7 18.1 162 207-412 11-202 (484)
54 PRK07003 DNA polymerase III su 99.7 8E-16 1.7E-20 167.6 19.4 162 208-413 10-201 (830)
55 PRK14962 DNA polymerase III su 99.7 7E-16 1.5E-20 164.1 18.6 157 207-407 7-193 (472)
56 COG2256 MGS1 ATPase related to 99.7 5.7E-16 1.2E-20 156.5 16.3 151 209-404 19-177 (436)
57 PRK12323 DNA polymerase III su 99.7 3.9E-16 8.5E-21 168.0 15.4 179 207-429 9-223 (700)
58 COG0466 Lon ATP-dependent Lon 99.7 1.2E-15 2.7E-20 163.2 18.3 159 215-404 324-509 (782)
59 TIGR02639 ClpA ATP-dependent C 99.7 3.6E-16 7.7E-21 175.4 14.6 197 209-454 177-407 (731)
60 PRK14960 DNA polymerase III su 99.7 1.2E-15 2.5E-20 164.8 17.3 159 208-410 9-197 (702)
61 PRK14961 DNA polymerase III su 99.7 3.5E-15 7.7E-20 154.5 18.5 159 208-410 10-198 (363)
62 KOG2004 Mitochondrial ATP-depe 99.6 5.4E-15 1.2E-19 157.5 19.2 201 215-453 412-642 (906)
63 PLN03025 replication factor C 99.6 3.8E-15 8.2E-20 151.7 16.8 162 202-410 3-178 (319)
64 PHA02544 44 clamp loader, smal 99.6 9.5E-15 2E-19 148.2 19.4 158 200-403 9-173 (316)
65 TIGR03345 VI_ClpV1 type VI sec 99.6 1.9E-15 4.1E-20 171.2 15.5 202 209-456 182-414 (852)
66 PRK06645 DNA polymerase III su 99.6 7.3E-15 1.6E-19 157.0 18.5 159 207-409 14-206 (507)
67 PRK14958 DNA polymerase III su 99.6 4.2E-15 9.2E-20 159.6 16.7 159 207-409 9-197 (509)
68 PRK14964 DNA polymerase III su 99.6 6.3E-15 1.4E-19 156.5 17.5 159 208-410 7-195 (491)
69 PRK07994 DNA polymerase III su 99.6 8.5E-15 1.9E-19 159.8 18.3 157 208-408 10-196 (647)
70 PRK14949 DNA polymerase III su 99.6 8.9E-15 1.9E-19 162.2 18.5 158 208-409 10-197 (944)
71 PRK10865 protein disaggregatio 99.6 3.4E-15 7.3E-20 169.6 15.0 156 209-404 173-355 (857)
72 PRK08691 DNA polymerase III su 99.6 7.1E-15 1.5E-19 160.0 16.3 160 208-411 10-199 (709)
73 PRK13342 recombination factor 99.6 1.4E-14 3.1E-19 152.5 17.6 151 207-405 5-166 (413)
74 PRK14963 DNA polymerase III su 99.6 2.2E-14 4.9E-19 153.7 19.2 158 208-409 8-194 (504)
75 PRK05563 DNA polymerase III su 99.6 1.9E-14 4.1E-19 156.5 18.7 160 208-411 10-199 (559)
76 TIGR03346 chaperone_ClpB ATP-d 99.6 8.1E-15 1.8E-19 166.9 16.0 202 209-456 168-400 (852)
77 TIGR02397 dnaX_nterm DNA polym 99.6 2.2E-14 4.8E-19 147.6 17.4 161 207-411 7-197 (355)
78 PRK14951 DNA polymerase III su 99.6 2.3E-14 5E-19 156.1 17.9 161 207-411 9-204 (618)
79 PRK14957 DNA polymerase III su 99.6 3.2E-14 7E-19 153.1 18.5 159 208-410 10-198 (546)
80 PRK05896 DNA polymerase III su 99.6 2.2E-14 4.7E-19 154.7 17.1 157 207-407 9-195 (605)
81 PRK07764 DNA polymerase III su 99.6 2.9E-14 6.2E-19 160.1 18.4 159 207-409 8-198 (824)
82 PRK14952 DNA polymerase III su 99.6 3.2E-14 6.9E-19 154.4 17.9 162 207-412 6-199 (584)
83 PRK07133 DNA polymerase III su 99.6 3.4E-14 7.4E-19 156.0 18.2 157 207-407 11-194 (725)
84 PRK14969 DNA polymerase III su 99.6 2.1E-14 4.5E-19 155.1 16.0 159 208-410 10-198 (527)
85 PRK14970 DNA polymerase III su 99.6 6.3E-14 1.4E-18 145.4 19.1 160 207-410 10-187 (367)
86 PRK07940 DNA polymerase III su 99.6 1.3E-13 2.7E-18 143.7 20.8 155 212-401 3-187 (394)
87 PRK06305 DNA polymerase III su 99.6 1.2E-13 2.6E-18 146.6 20.9 156 208-407 11-197 (451)
88 COG2607 Predicted ATPase (AAA+ 99.6 4.7E-14 1E-18 133.8 15.6 179 199-410 45-246 (287)
89 PRK14959 DNA polymerase III su 99.6 4.7E-14 1E-18 152.8 17.8 162 207-412 9-200 (624)
90 PRK11034 clpA ATP-dependent Cl 99.6 8.6E-15 1.9E-19 163.2 12.2 198 212-454 184-411 (758)
91 PRK14965 DNA polymerase III su 99.6 4E-14 8.6E-19 154.6 16.6 158 208-409 10-197 (576)
92 TIGR02928 orc1/cdc6 family rep 99.6 4.1E-13 8.9E-18 138.8 22.2 200 213-456 14-258 (365)
93 TIGR02902 spore_lonB ATP-depen 99.6 5.8E-14 1.2E-18 152.0 16.1 176 201-419 54-292 (531)
94 PRK06893 DNA replication initi 99.6 8.3E-14 1.8E-18 135.3 15.4 173 206-416 8-187 (229)
95 PRK08451 DNA polymerase III su 99.6 1.5E-13 3.3E-18 147.2 18.7 160 207-410 7-196 (535)
96 PRK14953 DNA polymerase III su 99.5 1.3E-13 2.9E-18 147.3 17.7 160 207-410 9-198 (486)
97 TIGR02640 gas_vesic_GvpN gas v 99.5 2.7E-13 5.9E-18 134.3 18.8 129 248-404 21-199 (262)
98 PRK14955 DNA polymerase III su 99.5 7.1E-14 1.5E-18 146.4 15.4 156 208-407 10-203 (397)
99 CHL00095 clpC Clp protease ATP 99.5 3.7E-14 8E-19 161.1 14.0 200 211-456 176-405 (821)
100 PRK10787 DNA-binding ATP-depen 99.5 7.4E-14 1.6E-18 156.8 16.3 161 212-404 319-507 (784)
101 PRK06647 DNA polymerase III su 99.5 1.4E-13 3.1E-18 149.3 17.9 159 208-410 10-198 (563)
102 PRK09111 DNA polymerase III su 99.5 2.1E-13 4.5E-18 148.7 18.4 161 207-411 17-212 (598)
103 KOG0989 Replication factor C, 99.5 7.7E-14 1.7E-18 136.7 13.2 166 201-413 25-211 (346)
104 TIGR03420 DnaA_homol_Hda DnaA 99.5 1.3E-13 2.8E-18 132.9 14.6 166 207-413 8-182 (226)
105 PRK12402 replication factor C 99.5 2.8E-13 6.1E-18 138.3 17.8 163 201-410 4-204 (337)
106 PRK14954 DNA polymerase III su 99.5 2.6E-13 5.7E-18 148.2 18.3 156 208-407 10-203 (620)
107 PTZ00112 origin recognition co 99.5 6.8E-13 1.5E-17 145.5 20.7 193 214-451 755-988 (1164)
108 PRK05342 clpX ATP-dependent pr 99.5 8.9E-14 1.9E-18 145.5 13.2 178 212-402 68-324 (412)
109 PRK00149 dnaA chromosomal repl 99.5 1.2E-12 2.7E-17 139.4 21.9 192 207-433 115-324 (450)
110 PRK14948 DNA polymerase III su 99.5 4.3E-13 9.4E-18 147.1 18.9 156 207-406 9-196 (620)
111 KOG0735 AAA+-type ATPase [Post 99.5 2.3E-13 4.9E-18 145.0 14.6 195 214-431 408-616 (952)
112 PRK14950 DNA polymerase III su 99.5 5.4E-13 1.2E-17 146.2 18.2 160 207-410 9-199 (585)
113 PRK14971 DNA polymerase III su 99.5 6.1E-13 1.3E-17 145.9 18.2 161 207-411 10-201 (614)
114 PRK11034 clpA ATP-dependent Cl 99.5 2.4E-13 5.1E-18 151.8 14.8 159 215-404 459-667 (758)
115 TIGR00382 clpX endopeptidase C 99.5 5.7E-13 1.2E-17 138.9 15.8 223 212-451 74-379 (413)
116 PRK00440 rfc replication facto 99.5 1.4E-12 3.1E-17 132.0 18.2 163 201-410 6-181 (319)
117 PRK13341 recombination factor 99.5 9.4E-13 2E-17 146.4 18.2 157 201-404 17-182 (725)
118 PRK00411 cdc6 cell division co 99.5 4.6E-12 1E-16 132.4 22.5 157 213-404 29-221 (394)
119 PRK08903 DnaA regulatory inact 99.5 7E-13 1.5E-17 128.3 15.0 164 206-414 10-181 (227)
120 TIGR00362 DnaA chromosomal rep 99.5 1.1E-12 2.5E-17 137.8 17.4 191 207-433 103-312 (405)
121 PRK08084 DNA replication initi 99.5 9.7E-13 2.1E-17 128.3 14.8 168 207-413 15-190 (235)
122 KOG0736 Peroxisome assembly fa 99.4 1.1E-12 2.4E-17 141.0 15.0 170 246-433 429-607 (953)
123 PRK08727 hypothetical protein; 99.4 2.3E-12 5.1E-17 125.4 15.9 164 207-412 12-184 (233)
124 TIGR02639 ClpA ATP-dependent C 99.4 1.3E-12 2.8E-17 146.9 16.1 154 215-404 455-663 (731)
125 KOG1969 DNA replication checkp 99.4 7.6E-12 1.7E-16 134.2 19.7 175 201-406 260-484 (877)
126 PRK14086 dnaA chromosomal repl 99.4 5.3E-12 1.2E-16 136.5 17.5 157 249-433 315-490 (617)
127 COG2812 DnaX DNA polymerase II 99.4 2.2E-12 4.7E-17 137.0 14.2 161 208-412 10-200 (515)
128 KOG2028 ATPase related to the 99.4 4.9E-12 1.1E-16 126.2 15.1 148 209-401 133-292 (554)
129 PRK07471 DNA polymerase III su 99.4 3.4E-11 7.3E-16 124.6 21.9 152 208-403 13-213 (365)
130 COG1474 CDC6 Cdc6-related prot 99.4 2E-11 4.3E-16 126.2 19.8 208 216-469 19-262 (366)
131 TIGR02903 spore_lon_C ATP-depe 99.4 9.5E-12 2.1E-16 136.9 17.8 170 208-418 148-381 (615)
132 TIGR01650 PD_CobS cobaltochela 99.4 2.9E-12 6.2E-17 129.2 11.9 130 247-403 63-233 (327)
133 PRK14088 dnaA chromosomal repl 99.4 5.7E-12 1.2E-16 133.6 14.7 190 207-433 98-307 (440)
134 PRK09112 DNA polymerase III su 99.4 3.5E-11 7.5E-16 123.8 19.9 180 208-432 17-241 (351)
135 PRK05564 DNA polymerase III su 99.4 6.1E-11 1.3E-15 120.5 21.3 148 212-403 2-165 (313)
136 PRK13407 bchI magnesium chelat 99.4 1.3E-11 2.7E-16 125.9 16.2 156 209-404 3-217 (334)
137 cd00009 AAA The AAA+ (ATPases 99.4 8.5E-12 1.9E-16 109.7 13.0 116 247-389 18-151 (151)
138 PRK05642 DNA replication initi 99.4 9.4E-12 2E-16 121.3 14.5 161 207-404 12-180 (234)
139 PRK12422 chromosomal replicati 99.4 9.4E-12 2E-16 131.9 15.5 156 249-432 142-314 (445)
140 PF07728 AAA_5: AAA domain (dy 99.3 1E-12 2.2E-17 117.2 6.0 105 250-381 1-139 (139)
141 COG0714 MoxR-like ATPases [Gen 99.3 1.7E-11 3.8E-16 125.4 15.5 131 247-404 42-204 (329)
142 PHA02244 ATPase-like protein 99.3 1.9E-11 4.2E-16 124.7 14.3 119 248-395 119-266 (383)
143 PF00308 Bac_DnaA: Bacterial d 99.3 2E-11 4.2E-16 117.9 13.3 156 250-432 36-209 (219)
144 PRK10865 protein disaggregatio 99.3 3.9E-11 8.4E-16 136.7 17.4 157 213-404 567-780 (857)
145 PRK06620 hypothetical protein; 99.3 4.2E-11 9.2E-16 115.1 15.0 158 209-416 11-173 (214)
146 PRK14087 dnaA chromosomal repl 99.3 4.7E-11 1E-15 126.9 16.8 188 210-433 111-321 (450)
147 COG0542 clpA ATP-binding subun 99.3 1.8E-11 3.8E-16 134.8 13.7 205 212-457 168-398 (786)
148 CHL00081 chlI Mg-protoporyphyr 99.3 4.1E-11 8.9E-16 122.6 15.4 154 211-404 14-233 (350)
149 COG0464 SpoVK ATPases of the A 99.3 2.7E-11 5.9E-16 130.6 14.6 180 235-432 5-193 (494)
150 TIGR00390 hslU ATP-dependent p 99.3 1.7E-11 3.7E-16 126.7 11.1 70 215-284 13-83 (441)
151 COG0542 clpA ATP-binding subun 99.3 3.6E-11 7.7E-16 132.4 14.0 195 214-451 491-749 (786)
152 TIGR02030 BchI-ChlI magnesium 99.3 2.1E-10 4.5E-15 117.3 18.7 153 212-404 2-220 (337)
153 PRK05201 hslU ATP-dependent pr 99.3 1.5E-11 3.2E-16 127.3 10.3 70 215-284 16-86 (443)
154 TIGR00678 holB DNA polymerase 99.3 8.4E-11 1.8E-15 110.5 14.4 124 247-402 13-167 (188)
155 CHL00095 clpC Clp protease ATP 99.3 6.3E-11 1.4E-15 134.8 15.3 155 214-404 509-733 (821)
156 TIGR03346 chaperone_ClpB ATP-d 99.3 9.5E-11 2.1E-15 133.8 16.7 157 213-404 564-777 (852)
157 TIGR03345 VI_ClpV1 type VI sec 99.2 8.9E-11 1.9E-15 133.5 15.1 156 214-404 566-781 (852)
158 PRK08058 DNA polymerase III su 99.2 1E-09 2.2E-14 112.3 18.8 146 212-401 3-180 (329)
159 PRK07399 DNA polymerase III su 99.2 7.1E-10 1.5E-14 112.6 17.2 174 212-432 2-222 (314)
160 PRK09087 hypothetical protein; 99.2 2.3E-10 5.1E-15 110.9 12.9 130 250-417 46-180 (226)
161 PRK11331 5-methylcytosine-spec 99.2 2.6E-10 5.6E-15 119.3 14.1 136 248-394 194-363 (459)
162 smart00763 AAA_PrkA PrkA AAA d 99.2 5.8E-10 1.3E-14 113.8 15.3 63 212-281 48-118 (361)
163 PRK05707 DNA polymerase III su 99.2 1.8E-09 3.9E-14 110.2 18.9 124 247-402 21-177 (328)
164 PRK08116 hypothetical protein; 99.2 2.3E-10 5E-15 113.7 11.9 148 212-392 83-251 (268)
165 TIGR00602 rad24 checkpoint pro 99.1 5.1E-10 1.1E-14 122.6 15.1 206 200-449 72-328 (637)
166 PF07726 AAA_3: ATPase family 99.1 3.1E-11 6.7E-16 105.4 4.3 106 250-382 1-130 (131)
167 PF01078 Mg_chelatase: Magnesi 99.1 1.8E-10 3.9E-15 108.9 9.3 140 212-393 1-205 (206)
168 PF07724 AAA_2: AAA domain (Cd 99.1 1.2E-10 2.5E-15 108.1 7.6 109 247-369 2-131 (171)
169 PRK07952 DNA replication prote 99.1 3.7E-10 8E-15 110.5 10.2 97 208-311 66-174 (244)
170 smart00382 AAA ATPases associa 99.1 5.4E-10 1.2E-14 97.1 9.0 120 248-390 2-147 (148)
171 COG0470 HolB ATPase involved i 99.1 4E-09 8.8E-14 106.8 16.6 119 250-400 26-178 (325)
172 PRK13531 regulatory ATPase Rav 99.1 9.7E-10 2.1E-14 115.9 11.9 129 247-402 38-193 (498)
173 TIGR02442 Cob-chelat-sub cobal 99.1 6.5E-10 1.4E-14 123.1 10.9 152 212-403 2-214 (633)
174 PRK12377 putative replication 99.0 1E-09 2.2E-14 107.7 10.9 134 211-377 71-220 (248)
175 PRK06964 DNA polymerase III su 99.0 1.9E-08 4.1E-13 103.0 19.7 125 246-402 19-203 (342)
176 COG1224 TIP49 DNA helicase TIP 99.0 1.5E-08 3.2E-13 101.6 18.2 71 340-418 307-389 (450)
177 PRK04132 replication factor C 99.0 4.7E-09 1E-13 117.9 16.5 126 251-408 567-707 (846)
178 smart00350 MCM minichromosome 99.0 2.6E-09 5.6E-14 115.5 13.3 127 250-404 238-401 (509)
179 PF13177 DNA_pol3_delta2: DNA 99.0 8.3E-09 1.8E-13 94.9 14.7 113 246-390 17-161 (162)
180 PRK08939 primosomal protein Dn 99.0 1.3E-09 2.9E-14 110.2 10.2 97 210-311 123-229 (306)
181 COG0593 DnaA ATPase involved i 99.0 1.5E-08 3.2E-13 105.2 16.6 189 208-433 81-288 (408)
182 PF03215 Rad17: Rad17 cell cyc 99.0 1.4E-08 3E-13 109.3 16.4 210 198-450 5-269 (519)
183 PRK08181 transposase; Validate 99.0 2.7E-09 5.9E-14 105.9 10.0 94 248-368 106-209 (269)
184 PF06068 TIP49: TIP49 C-termin 98.9 1.2E-08 2.6E-13 103.6 14.3 73 338-418 292-376 (398)
185 COG1219 ClpX ATP-dependent pro 98.9 1.8E-08 3.9E-13 99.7 14.2 119 216-351 63-203 (408)
186 KOG0741 AAA+-type ATPase [Post 98.9 5.8E-09 1.3E-13 108.8 10.2 136 248-401 538-684 (744)
187 KOG0991 Replication factor C, 98.9 9.8E-09 2.1E-13 97.5 10.7 155 205-404 18-186 (333)
188 TIGR02031 BchD-ChlD magnesium 98.9 2.8E-08 6E-13 109.1 15.6 128 249-403 17-174 (589)
189 PRK11608 pspF phage shock prot 98.9 2.7E-08 5.9E-13 101.7 13.8 154 212-404 4-195 (326)
190 PRK06090 DNA polymerase III su 98.9 2.3E-07 5E-12 94.2 20.3 124 246-401 23-178 (319)
191 PF01695 IstB_IS21: IstB-like 98.9 1.5E-09 3.3E-14 101.3 4.2 94 248-368 47-150 (178)
192 PRK06871 DNA polymerase III su 98.8 8.5E-08 1.9E-12 97.6 16.0 124 247-402 23-178 (325)
193 PF00158 Sigma54_activat: Sigm 98.8 3.3E-08 7.1E-13 91.5 11.8 86 216-312 1-106 (168)
194 PF12775 AAA_7: P-loop contain 98.8 1.1E-08 2.4E-13 101.9 9.3 134 248-404 33-194 (272)
195 PRK06835 DNA replication prote 98.8 1.8E-08 4E-13 102.8 11.0 104 248-377 183-303 (329)
196 TIGR01817 nifA Nif-specific re 98.8 3.4E-08 7.4E-13 107.7 13.6 155 211-404 193-385 (534)
197 PRK08769 DNA polymerase III su 98.8 2.1E-07 4.6E-12 94.5 18.2 123 247-401 25-183 (319)
198 PRK06526 transposase; Provisio 98.8 4.9E-09 1.1E-13 103.3 6.1 64 248-311 98-171 (254)
199 PRK11388 DNA-binding transcrip 98.8 6.5E-08 1.4E-12 107.6 15.7 155 212-404 323-511 (638)
200 TIGR02974 phageshock_pspF psp 98.8 3.4E-08 7.3E-13 101.1 12.2 149 217-404 2-188 (329)
201 COG1484 DnaC DNA replication p 98.8 2.5E-08 5.3E-13 98.4 10.3 92 212-311 77-179 (254)
202 PRK07993 DNA polymerase III su 98.8 1.3E-07 2.8E-12 97.0 15.3 124 246-401 22-178 (334)
203 PRK08699 DNA polymerase III su 98.7 5.1E-08 1.1E-12 99.5 11.1 124 246-401 19-183 (325)
204 PRK10820 DNA-binding transcrip 98.7 4.2E-07 9.1E-12 98.7 17.5 157 209-404 199-393 (520)
205 KOG0745 Putative ATP-dependent 98.7 2.8E-08 6E-13 101.8 7.5 131 248-391 226-387 (564)
206 TIGR00368 Mg chelatase-related 98.7 5.7E-08 1.2E-12 104.3 9.9 143 211-395 189-396 (499)
207 PRK15424 propionate catabolism 98.7 3.7E-07 7.9E-12 98.9 16.1 156 211-405 216-418 (538)
208 PRK06921 hypothetical protein; 98.7 8.7E-08 1.9E-12 95.2 10.5 63 248-310 117-188 (266)
209 PF00910 RNA_helicase: RNA hel 98.7 2.3E-08 5E-13 85.4 5.5 61 251-311 1-61 (107)
210 COG1239 ChlI Mg-chelatase subu 98.7 3.7E-07 8E-12 94.0 14.4 155 211-405 14-234 (423)
211 TIGR02329 propionate_PrpR prop 98.7 1.8E-07 3.9E-12 101.2 12.5 158 209-405 207-403 (526)
212 PF01637 Arch_ATPase: Archaeal 98.7 4.7E-07 1E-11 86.6 14.1 158 248-430 20-233 (234)
213 PRK09862 putative ATP-dependen 98.7 7.2E-08 1.5E-12 103.3 9.1 141 212-394 189-392 (506)
214 PRK09183 transposase/IS protei 98.6 5.3E-08 1.1E-12 96.4 7.4 64 248-311 102-176 (259)
215 PF14532 Sigma54_activ_2: Sigm 98.6 6.4E-08 1.4E-12 86.4 6.9 78 218-312 2-82 (138)
216 TIGR03015 pepcterm_ATPase puta 98.6 2.8E-07 6.2E-12 91.0 12.1 126 250-404 45-206 (269)
217 PF13173 AAA_14: AAA domain 98.6 1.8E-07 3.8E-12 82.5 9.4 63 249-311 3-73 (128)
218 KOG1942 DNA helicase, TBP-inte 98.6 1.3E-06 2.9E-11 85.6 15.7 57 359-418 326-395 (456)
219 COG0606 Predicted ATPase with 98.6 5.5E-08 1.2E-12 101.4 6.3 48 210-272 175-222 (490)
220 COG1220 HslU ATP-dependent pro 98.6 5.1E-07 1.1E-11 90.2 12.0 69 216-284 17-86 (444)
221 PRK15429 formate hydrogenlyase 98.6 6E-07 1.3E-11 100.8 13.7 155 211-404 373-565 (686)
222 PRK05022 anaerobic nitric oxid 98.5 1E-06 2.3E-11 95.5 14.4 154 212-404 185-376 (509)
223 PF12774 AAA_6: Hydrolytic ATP 98.5 8.8E-07 1.9E-11 86.1 12.2 133 247-404 31-181 (231)
224 KOG1051 Chaperone HSP104 and r 98.5 2.8E-06 6.1E-11 95.5 17.3 122 215-367 563-710 (898)
225 PF03969 AFG1_ATPase: AFG1-lik 98.5 4.8E-07 1E-11 93.6 10.3 96 245-368 59-168 (362)
226 KOG0990 Replication factor C, 98.5 5.7E-07 1.2E-11 89.3 9.9 161 200-407 29-207 (360)
227 KOG1514 Origin recognition com 98.5 2.9E-06 6.3E-11 91.8 15.7 170 250-457 424-633 (767)
228 PTZ00111 DNA replication licen 98.5 8.1E-07 1.8E-11 99.9 11.5 127 250-403 494-657 (915)
229 PRK05917 DNA polymerase III su 98.5 1.5E-05 3.2E-10 79.8 19.2 112 247-390 18-154 (290)
230 TIGR00764 lon_rel lon-related 98.5 9.1E-07 2E-11 97.5 11.6 50 211-275 15-64 (608)
231 PF13401 AAA_22: AAA domain; P 98.4 6.8E-07 1.5E-11 78.2 7.6 38 248-285 4-49 (131)
232 COG1221 PspF Transcriptional r 98.4 1.2E-06 2.5E-11 91.0 10.3 158 210-405 74-266 (403)
233 KOG1970 Checkpoint RAD17-RFC c 98.4 3.3E-06 7.1E-11 89.2 13.5 176 198-407 68-284 (634)
234 PHA02624 large T antigen; Prov 98.4 7.8E-07 1.7E-11 95.9 9.1 125 244-389 427-561 (647)
235 PRK07132 DNA polymerase III su 98.4 1.5E-05 3.3E-10 80.3 17.7 122 247-401 17-160 (299)
236 PRK05818 DNA polymerase III su 98.4 1.2E-05 2.6E-10 78.9 15.8 113 246-390 5-147 (261)
237 PRK07276 DNA polymerase III su 98.3 4.3E-05 9.2E-10 76.7 19.2 120 246-400 22-172 (290)
238 KOG2035 Replication factor C, 98.3 8.5E-06 1.8E-10 79.6 13.5 163 207-414 6-210 (351)
239 PF05729 NACHT: NACHT domain 98.3 3.8E-06 8.2E-11 76.0 10.6 133 249-404 1-164 (166)
240 PRK10923 glnG nitrogen regulat 98.3 6.4E-06 1.4E-10 88.3 12.9 154 212-404 136-327 (469)
241 PRK13406 bchD magnesium chelat 98.3 7.4E-06 1.6E-10 89.7 12.5 120 249-395 26-174 (584)
242 PF05621 TniB: Bacterial TniB 98.3 2E-05 4.4E-10 78.7 14.4 179 223-432 42-262 (302)
243 KOG2227 Pre-initiation complex 98.2 2.6E-05 5.7E-10 81.2 15.3 200 211-455 147-382 (529)
244 TIGR02915 PEP_resp_reg putativ 98.2 1.7E-05 3.7E-10 84.4 14.5 153 213-404 138-328 (445)
245 TIGR01818 ntrC nitrogen regula 98.2 1.1E-05 2.3E-10 86.4 12.9 152 214-404 134-323 (463)
246 PF00931 NB-ARC: NB-ARC domain 98.2 2E-05 4.3E-10 78.5 13.6 147 247-428 18-199 (287)
247 PHA02774 E1; Provisional 98.2 9.6E-06 2.1E-10 87.3 11.6 58 244-308 430-488 (613)
248 PRK11361 acetoacetate metaboli 98.2 1.3E-05 2.8E-10 85.5 12.6 88 213-312 142-250 (457)
249 KOG1051 Chaperone HSP104 and r 98.2 9.9E-06 2.1E-10 91.2 11.7 150 213-401 185-361 (898)
250 KOG1968 Replication factor C, 98.2 1.4E-05 3E-10 90.5 12.8 178 200-409 308-508 (871)
251 PLN03210 Resistant to P. syrin 98.2 4E-05 8.6E-10 91.0 17.0 57 207-274 177-233 (1153)
252 COG3829 RocR Transcriptional r 98.1 7.1E-05 1.5E-09 79.5 15.8 124 207-367 238-390 (560)
253 cd01120 RecA-like_NTPases RecA 98.1 3.2E-05 6.8E-10 69.4 11.5 30 251-280 2-34 (165)
254 COG5271 MDN1 AAA ATPase contai 98.1 1.8E-05 3.9E-10 91.6 11.6 126 248-404 1543-1704(4600)
255 PHA00729 NTP-binding motif con 98.1 4E-06 8.8E-11 80.8 5.4 63 249-311 18-94 (226)
256 PRK15115 response regulator Gl 98.1 2.5E-05 5.5E-10 83.0 11.4 64 248-312 157-241 (444)
257 KOG0478 DNA replication licens 98.0 2.7E-05 5.9E-10 84.1 11.0 161 215-404 430-627 (804)
258 KOG2680 DNA helicase TIP49, TB 98.0 2.7E-05 5.9E-10 76.9 9.6 58 359-419 318-387 (454)
259 PF08740 BCS1_N: BCS1 N termin 98.0 0.00037 8.1E-09 65.3 16.3 138 59-216 27-187 (187)
260 PRK15455 PrkA family serine pr 98.0 1.2E-05 2.7E-10 86.5 6.8 67 208-281 70-137 (644)
261 PF13207 AAA_17: AAA domain; P 98.0 5.2E-06 1.1E-10 71.7 3.2 31 251-281 2-32 (121)
262 PF00493 MCM: MCM2/3/5 family 98.0 4.6E-06 9.9E-11 85.6 3.2 129 250-405 59-223 (331)
263 COG1485 Predicted ATPase [Gene 97.9 1.1E-05 2.5E-10 81.4 5.7 94 246-367 63-170 (367)
264 PRK10365 transcriptional regul 97.9 8.7E-05 1.9E-09 78.7 12.1 85 216-312 141-246 (441)
265 TIGR01618 phage_P_loop phage n 97.9 2E-05 4.3E-10 76.0 6.2 63 249-313 13-95 (220)
266 KOG2170 ATPase of the AAA+ sup 97.9 4E-05 8.7E-10 75.8 7.9 89 215-311 83-190 (344)
267 PRK07261 topology modulation p 97.9 3E-05 6.5E-10 71.9 6.6 31 251-281 3-33 (171)
268 TIGR02237 recomb_radB DNA repa 97.9 7.1E-05 1.5E-09 71.3 9.2 40 244-283 8-50 (209)
269 COG1618 Predicted nucleotide k 97.8 9.4E-05 2E-09 67.1 9.1 24 249-272 6-29 (179)
270 PRK00131 aroK shikimate kinase 97.8 1.5E-05 3.3E-10 73.1 4.1 34 247-280 3-36 (175)
271 PF14516 AAA_35: AAA-like doma 97.8 0.00078 1.7E-08 69.2 16.5 133 248-403 31-214 (331)
272 PF10443 RNA12: RNA12 protein; 97.8 0.00073 1.6E-08 70.5 16.1 92 359-452 185-302 (431)
273 PF05707 Zot: Zonular occluden 97.8 9.9E-05 2.1E-09 69.8 8.5 114 251-390 3-146 (193)
274 TIGR02688 conserved hypothetic 97.8 0.00035 7.5E-09 73.1 13.1 60 248-311 209-272 (449)
275 PRK08118 topology modulation p 97.8 4.5E-05 9.8E-10 70.5 5.9 32 250-281 3-34 (167)
276 COG2204 AtoC Response regulato 97.7 0.00018 3.8E-09 76.2 10.7 153 212-404 139-330 (464)
277 PRK12723 flagellar biosynthesi 97.7 0.00036 7.8E-09 72.9 12.7 65 247-311 173-266 (388)
278 COG1373 Predicted ATPase (AAA+ 97.7 0.00032 7E-09 73.8 12.4 130 244-406 34-183 (398)
279 PF13604 AAA_30: AAA domain; P 97.7 0.00042 9.1E-09 65.7 12.0 35 249-283 19-56 (196)
280 PRK14722 flhF flagellar biosyn 97.7 9.7E-05 2.1E-09 76.6 8.1 103 248-375 137-266 (374)
281 PRK09376 rho transcription ter 97.7 0.00042 9E-09 71.9 12.5 24 251-274 172-195 (416)
282 PF06309 Torsin: Torsin; Inte 97.7 6.6E-05 1.4E-09 65.7 5.2 50 215-272 26-77 (127)
283 cd01124 KaiC KaiC is a circadi 97.7 0.00038 8.2E-09 64.7 10.7 30 251-280 2-34 (187)
284 PRK06067 flagellar accessory p 97.6 0.00018 4E-09 69.8 8.6 37 244-280 21-60 (234)
285 COG1241 MCM2 Predicted ATPase 97.6 6.1E-05 1.3E-09 83.1 5.6 126 250-403 321-483 (682)
286 PRK05800 cobU adenosylcobinami 97.6 0.0002 4.4E-09 66.4 8.2 64 250-313 3-90 (170)
287 PF05272 VirE: Virulence-assoc 97.6 0.00023 4.9E-09 67.7 8.6 113 244-389 48-169 (198)
288 cd01394 radB RadB. The archaea 97.6 0.00037 8.1E-09 66.8 10.2 38 244-281 15-55 (218)
289 PF03266 NTPase_1: NTPase; In 97.6 0.00011 2.5E-09 67.9 6.3 22 251-272 2-23 (168)
290 cd00464 SK Shikimate kinase (S 97.6 5.2E-05 1.1E-09 68.2 3.9 31 250-280 1-31 (154)
291 PRK13947 shikimate kinase; Pro 97.6 5.1E-05 1.1E-09 69.7 3.9 32 250-281 3-34 (171)
292 PRK03839 putative kinase; Prov 97.6 5.1E-05 1.1E-09 70.6 3.6 30 251-280 3-32 (180)
293 COG1116 TauB ABC-type nitrate/ 97.6 0.00024 5.3E-09 68.9 8.2 23 250-272 31-53 (248)
294 COG5245 DYN1 Dynein, heavy cha 97.6 0.00019 4.2E-09 82.9 8.5 139 246-404 1492-1659(3164)
295 cd00544 CobU Adenosylcobinamid 97.6 0.00051 1.1E-08 63.6 9.8 63 251-313 2-87 (169)
296 PRK00625 shikimate kinase; Pro 97.5 6.4E-05 1.4E-09 69.9 3.7 31 250-280 2-32 (173)
297 PF13671 AAA_33: AAA domain; P 97.5 4.1E-05 8.9E-10 67.9 2.2 27 251-277 2-28 (143)
298 PRK13949 shikimate kinase; Pro 97.5 6.5E-05 1.4E-09 69.6 3.5 31 250-280 3-33 (169)
299 PRK08533 flagellar accessory p 97.5 0.00053 1.1E-08 66.7 9.9 37 244-280 20-59 (230)
300 PRK12608 transcription termina 97.5 0.00084 1.8E-08 69.4 11.7 24 251-274 136-159 (380)
301 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00038 8.3E-09 66.9 8.7 64 249-312 30-121 (213)
302 KOG2228 Origin recognition com 97.5 0.0006 1.3E-08 68.7 10.1 156 215-406 25-222 (408)
303 PRK09361 radB DNA repair and r 97.5 0.00033 7.2E-09 67.5 8.3 39 244-282 19-60 (225)
304 PRK00771 signal recognition pa 97.5 0.00063 1.4E-08 72.2 11.0 63 221-284 69-134 (437)
305 COG0703 AroK Shikimate kinase 97.5 7.6E-05 1.6E-09 68.8 3.1 32 249-280 3-34 (172)
306 cd03283 ABC_MutS-like MutS-lik 97.5 0.00033 7.2E-09 66.6 7.5 65 248-312 25-118 (199)
307 TIGR01069 mutS2 MutS2 family p 97.5 0.0005 1.1E-08 78.0 10.0 23 249-271 323-345 (771)
308 PRK13765 ATP-dependent proteas 97.4 0.00023 4.9E-09 78.8 6.9 52 208-274 25-76 (637)
309 TIGR00767 rho transcription te 97.4 0.0012 2.5E-08 68.9 11.7 26 248-273 168-193 (415)
310 COG3604 FhlA Transcriptional r 97.4 0.00066 1.4E-08 71.6 9.9 90 211-311 220-329 (550)
311 PRK13948 shikimate kinase; Pro 97.4 0.00013 2.8E-09 68.5 4.2 34 247-280 9-42 (182)
312 PRK00409 recombination and DNA 97.4 0.00053 1.1E-08 78.0 9.7 65 248-312 327-420 (782)
313 TIGR02012 tigrfam_recA protein 97.4 0.00043 9.3E-09 70.4 7.9 70 244-313 51-147 (321)
314 PF00519 PPV_E1_C: Papillomavi 97.4 0.00049 1.1E-08 70.8 8.2 115 244-391 258-384 (432)
315 PRK06217 hypothetical protein; 97.4 0.00013 2.8E-09 68.2 3.8 30 251-280 4-33 (183)
316 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00013 2.8E-09 67.9 3.7 28 251-278 2-29 (183)
317 KOG0480 DNA replication licens 97.4 0.00021 4.6E-09 76.9 5.5 162 213-405 344-544 (764)
318 cd01128 rho_factor Transcripti 97.4 0.0011 2.4E-08 65.2 10.3 27 248-274 16-42 (249)
319 PTZ00202 tuzin; Provisional 97.4 0.014 3E-07 61.5 18.6 77 210-298 258-334 (550)
320 PRK14532 adenylate kinase; Pro 97.4 0.00014 3E-09 68.1 3.7 30 250-279 2-31 (188)
321 TIGR01313 therm_gnt_kin carboh 97.4 0.00015 3.1E-09 66.3 3.7 28 251-278 1-28 (163)
322 PRK08154 anaerobic benzoate ca 97.4 0.00032 6.9E-09 71.3 6.5 58 218-280 108-165 (309)
323 PRK04040 adenylate kinase; Pro 97.4 0.0018 3.9E-08 61.0 11.1 29 249-277 3-33 (188)
324 cd02021 GntK Gluconate kinase 97.4 0.00014 3.1E-09 65.3 3.5 28 251-278 2-29 (150)
325 PRK05973 replicative DNA helic 97.4 0.0015 3.3E-08 63.7 10.8 37 244-280 60-99 (237)
326 PRK14531 adenylate kinase; Pro 97.4 0.00016 3.6E-09 67.6 3.8 31 249-279 3-33 (183)
327 cd02020 CMPK Cytidine monophos 97.4 0.00016 3.4E-09 64.4 3.5 30 251-280 2-31 (147)
328 KOG3347 Predicted nucleotide k 97.3 0.00015 3.3E-09 64.8 3.4 32 248-279 7-38 (176)
329 cd01393 recA_like RecA is a b 97.3 0.00076 1.6E-08 64.9 8.6 29 244-272 15-43 (226)
330 PRK04841 transcriptional regul 97.3 0.0068 1.5E-07 70.2 17.9 151 248-432 32-226 (903)
331 TIGR03499 FlhF flagellar biosy 97.3 0.00082 1.8E-08 67.4 9.0 36 248-283 194-234 (282)
332 PRK06581 DNA polymerase III su 97.3 0.0042 9.1E-08 60.4 13.3 126 248-405 15-163 (263)
333 PRK13946 shikimate kinase; Pro 97.3 0.00016 3.5E-09 67.8 3.5 33 248-280 10-42 (184)
334 KOG2383 Predicted ATPase [Gene 97.3 0.00041 9E-09 71.2 6.6 26 246-271 112-137 (467)
335 PF13191 AAA_16: AAA ATPase do 97.3 0.00011 2.3E-09 68.0 2.1 38 247-284 23-63 (185)
336 cd01428 ADK Adenylate kinase ( 97.3 0.00019 4E-09 67.2 3.7 29 251-279 2-30 (194)
337 PRK05057 aroK shikimate kinase 97.3 0.00021 4.5E-09 66.3 3.9 34 248-281 4-37 (172)
338 PRK14737 gmk guanylate kinase; 97.3 0.00075 1.6E-08 63.5 7.7 26 247-272 3-28 (186)
339 PF00437 T2SE: Type II/IV secr 97.3 0.00048 1E-08 68.4 6.8 89 210-309 100-207 (270)
340 PF13479 AAA_24: AAA domain 97.3 0.00053 1.2E-08 65.8 6.7 61 250-313 5-82 (213)
341 PRK03731 aroL shikimate kinase 97.3 0.00024 5.2E-09 65.4 4.0 31 250-280 4-34 (171)
342 cd01129 PulE-GspE PulE/GspE Th 97.3 0.0012 2.7E-08 65.5 9.2 85 211-309 57-159 (264)
343 PRK11823 DNA repair protein Ra 97.3 0.00049 1.1E-08 73.5 6.6 70 244-313 76-170 (446)
344 TIGR00150 HI0065_YjeE ATPase, 97.2 0.00098 2.1E-08 59.2 7.3 29 247-275 21-49 (133)
345 PF13086 AAA_11: AAA domain; P 97.2 0.00023 5E-09 67.9 3.6 22 251-272 20-41 (236)
346 PF06745 KaiC: KaiC; InterPro 97.2 0.0013 2.9E-08 63.3 9.0 38 244-281 15-56 (226)
347 PRK05703 flhF flagellar biosyn 97.2 0.0037 8E-08 66.3 13.0 36 248-283 221-261 (424)
348 COG4619 ABC-type uncharacteriz 97.2 0.00081 1.8E-08 61.6 6.8 25 248-272 29-53 (223)
349 PRK11889 flhF flagellar biosyn 97.2 0.004 8.6E-08 64.9 12.6 57 221-281 218-277 (436)
350 PRK14530 adenylate kinase; Pro 97.2 0.00028 6.1E-09 67.7 3.9 30 250-279 5-34 (215)
351 smart00072 GuKc Guanylate kina 97.2 0.0011 2.5E-08 61.9 7.9 25 248-272 2-26 (184)
352 COG1102 Cmk Cytidylate kinase 97.2 0.00027 5.9E-09 64.2 3.3 28 251-278 3-30 (179)
353 PF08298 AAA_PrkA: PrkA AAA do 97.2 0.0015 3.2E-08 66.8 8.7 65 213-284 59-125 (358)
354 cd01121 Sms Sms (bacterial rad 97.2 0.0031 6.7E-08 65.7 11.3 69 244-312 78-171 (372)
355 cd00267 ABC_ATPase ABC (ATP-bi 97.2 0.0014 3.1E-08 59.4 7.8 27 247-273 24-50 (157)
356 cd00983 recA RecA is a bacter 97.2 0.0012 2.6E-08 67.3 7.9 70 244-313 51-147 (325)
357 PRK06547 hypothetical protein; 97.2 0.0004 8.8E-09 64.5 4.1 35 246-280 13-47 (172)
358 PRK06762 hypothetical protein; 97.2 0.0004 8.7E-09 63.6 4.1 33 248-280 2-34 (166)
359 TIGR03878 thermo_KaiC_2 KaiC d 97.1 0.0012 2.5E-08 65.5 7.6 39 244-282 32-73 (259)
360 PRK02496 adk adenylate kinase; 97.1 0.00034 7.4E-09 65.3 3.5 29 251-279 4-32 (184)
361 cd02019 NK Nucleoside/nucleoti 97.1 0.00085 1.8E-08 52.5 5.2 41 251-311 2-43 (69)
362 PRK14528 adenylate kinase; Pro 97.1 0.00039 8.5E-09 65.3 3.7 30 250-279 3-32 (186)
363 cd03243 ABC_MutS_homologs The 97.1 0.0016 3.5E-08 61.8 8.0 64 249-312 30-121 (202)
364 cd00227 CPT Chloramphenicol (C 97.1 0.00033 7.1E-09 65.0 3.1 32 248-279 2-33 (175)
365 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00041 8.9E-09 64.5 3.8 29 250-278 5-33 (188)
366 PRK13695 putative NTPase; Prov 97.1 0.0024 5.2E-08 59.1 8.8 22 251-272 3-24 (174)
367 PF07693 KAP_NTPase: KAP famil 97.1 0.0058 1.3E-07 62.0 12.4 30 246-275 18-47 (325)
368 TIGR02858 spore_III_AA stage I 97.1 0.0017 3.6E-08 64.8 7.9 25 249-273 112-136 (270)
369 COG1855 ATPase (PilT family) [ 97.1 0.00078 1.7E-08 70.1 5.6 106 148-274 169-289 (604)
370 PTZ00088 adenylate kinase 1; P 97.1 0.00045 9.8E-09 67.2 3.7 30 250-279 8-37 (229)
371 PF10236 DAP3: Mitochondrial r 97.1 0.018 4E-07 58.5 15.5 100 299-406 156-280 (309)
372 PRK08233 hypothetical protein; 97.1 0.0027 6E-08 58.6 8.8 31 250-280 5-36 (182)
373 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0015 3.4E-08 63.1 7.3 53 244-296 15-76 (235)
374 PF13245 AAA_19: Part of AAA d 97.1 0.00077 1.7E-08 53.9 4.3 22 251-272 13-35 (76)
375 PRK00300 gmk guanylate kinase; 97.0 0.0041 8.9E-08 58.8 10.0 27 247-273 4-30 (205)
376 PF06431 Polyoma_lg_T_C: Polyo 97.0 0.0016 3.4E-08 66.5 7.3 139 222-389 137-285 (417)
377 COG1936 Predicted nucleotide k 97.0 0.00041 8.9E-09 63.7 2.9 29 251-280 3-31 (180)
378 TIGR01351 adk adenylate kinase 97.0 0.00049 1.1E-08 65.8 3.6 28 251-278 2-29 (210)
379 PLN02200 adenylate kinase fami 97.0 0.00059 1.3E-08 66.6 4.1 30 248-277 43-72 (234)
380 PRK04296 thymidine kinase; Pro 97.0 0.0042 9.1E-08 58.5 9.7 30 250-279 4-36 (190)
381 TIGR01613 primase_Cterm phage/ 97.0 0.0035 7.6E-08 63.5 9.8 88 213-310 47-139 (304)
382 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0021 4.6E-08 57.7 7.3 67 246-313 24-102 (144)
383 PRK00279 adk adenylate kinase; 97.0 0.00056 1.2E-08 65.6 3.8 29 251-279 3-31 (215)
384 cd03280 ABC_MutS2 MutS2 homolo 97.0 0.0016 3.4E-08 61.8 6.7 21 249-269 29-49 (200)
385 PRK06696 uridine kinase; Valid 97.0 0.0021 4.6E-08 62.0 7.6 41 248-288 22-65 (223)
386 COG3283 TyrR Transcriptional r 97.0 0.0059 1.3E-07 62.1 10.7 132 201-368 191-344 (511)
387 PRK14527 adenylate kinase; Pro 97.0 0.00055 1.2E-08 64.4 3.1 31 248-278 6-36 (191)
388 cd03287 ABC_MSH3_euk MutS3 hom 97.0 0.0023 4.9E-08 62.0 7.4 63 248-310 31-121 (222)
389 TIGR02525 plasmid_TraJ plasmid 97.0 0.0036 7.9E-08 65.1 9.4 24 249-272 150-173 (372)
390 cd03282 ABC_MSH4_euk MutS4 hom 97.0 0.0013 2.8E-08 62.9 5.6 64 248-311 29-120 (204)
391 PRK04182 cytidylate kinase; Pr 96.9 0.00066 1.4E-08 62.5 3.5 28 251-278 3-30 (180)
392 TIGR03263 guanyl_kin guanylate 96.9 0.0018 4E-08 59.9 6.5 25 250-274 3-27 (180)
393 PF00448 SRP54: SRP54-type pro 96.9 0.0022 4.8E-08 60.8 7.0 25 248-272 1-25 (196)
394 cd03216 ABC_Carb_Monos_I This 96.9 0.0022 4.8E-08 58.8 6.7 27 246-272 24-50 (163)
395 PF13238 AAA_18: AAA domain; P 96.9 0.00056 1.2E-08 59.1 2.4 22 251-272 1-22 (129)
396 TIGR02782 TrbB_P P-type conjug 96.9 0.0027 5.8E-08 64.3 7.5 25 248-272 132-156 (299)
397 PRK09354 recA recombinase A; P 96.9 0.0032 7E-08 64.7 8.1 70 244-313 56-152 (349)
398 PF00406 ADK: Adenylate kinase 96.9 0.00063 1.4E-08 61.4 2.7 26 253-278 1-26 (151)
399 PLN02199 shikimate kinase 96.9 0.0017 3.6E-08 65.1 5.8 33 248-280 102-134 (303)
400 PRK01184 hypothetical protein; 96.9 0.00088 1.9E-08 62.4 3.5 29 250-279 3-31 (184)
401 TIGR02173 cyt_kin_arch cytidyl 96.9 0.00091 2E-08 61.1 3.6 29 251-279 3-31 (171)
402 cd03284 ABC_MutS1 MutS1 homolo 96.8 0.0028 6.1E-08 61.0 7.0 61 249-309 31-119 (216)
403 cd00046 DEXDc DEAD-like helica 96.8 0.0021 4.6E-08 55.2 5.6 24 249-272 1-24 (144)
404 PRK12678 transcription termina 96.8 0.011 2.4E-07 64.0 12.0 22 251-272 419-440 (672)
405 PRK10867 signal recognition pa 96.8 0.034 7.4E-07 59.0 15.7 39 247-285 99-141 (433)
406 PF13521 AAA_28: AAA domain; P 96.8 0.00078 1.7E-08 61.6 2.9 26 251-277 2-27 (163)
407 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0039 8.4E-08 58.2 7.6 67 247-313 24-103 (177)
408 PF08433 KTI12: Chromatin asso 96.8 0.0017 3.7E-08 64.7 5.5 62 251-312 4-83 (270)
409 PF04665 Pox_A32: Poxvirus A32 96.8 0.028 6.2E-07 54.9 13.8 126 248-405 13-172 (241)
410 PRK13764 ATPase; Provisional 96.8 0.0028 6E-08 69.7 7.5 63 248-311 257-336 (602)
411 smart00534 MUTSac ATPase domai 96.8 0.003 6.5E-08 59.2 6.7 63 251-313 2-92 (185)
412 PRK12724 flagellar biosynthesi 96.8 0.016 3.6E-07 60.9 12.7 36 248-283 223-262 (432)
413 COG0563 Adk Adenylate kinase a 96.8 0.0011 2.3E-08 62.0 3.6 32 250-283 2-33 (178)
414 PHA02530 pseT polynucleotide k 96.8 0.001 2.2E-08 66.9 3.6 31 249-279 3-34 (300)
415 PRK06851 hypothetical protein; 96.8 0.013 2.8E-07 60.8 11.7 26 247-272 29-54 (367)
416 cd01131 PilT Pilus retraction 96.8 0.0026 5.7E-08 60.3 6.1 24 250-273 3-26 (198)
417 PRK14526 adenylate kinase; Pro 96.8 0.0012 2.5E-08 63.5 3.7 28 251-278 3-30 (211)
418 COG3854 SpoIIIAA ncharacterize 96.7 0.0036 7.8E-08 60.2 6.7 25 249-273 138-162 (308)
419 PF02367 UPF0079: Uncharacteri 96.7 0.0022 4.7E-08 56.2 4.8 65 247-311 14-100 (123)
420 PTZ00035 Rad51 protein; Provis 96.7 0.0082 1.8E-07 61.8 9.7 28 244-271 114-141 (337)
421 TIGR00017 cmk cytidylate kinas 96.7 0.042 9.2E-07 52.9 14.1 30 250-279 4-33 (217)
422 cd02027 APSK Adenosine 5'-phos 96.7 0.0016 3.5E-08 58.8 4.0 30 251-280 2-34 (149)
423 PRK12727 flagellar biosynthesi 96.7 0.0066 1.4E-07 65.5 8.9 64 247-310 349-439 (559)
424 smart00487 DEXDc DEAD-like hel 96.7 0.0056 1.2E-07 56.0 7.5 25 249-273 25-50 (201)
425 PRK10078 ribose 1,5-bisphospho 96.7 0.0014 3E-08 61.5 3.3 30 249-278 3-32 (186)
426 PF01745 IPT: Isopentenyl tran 96.7 0.0015 3.3E-08 62.1 3.5 35 250-284 3-37 (233)
427 COG3267 ExeA Type II secretory 96.6 0.046 9.9E-07 53.5 13.6 156 247-432 49-246 (269)
428 cd03247 ABCC_cytochrome_bd The 96.6 0.0079 1.7E-07 55.8 8.3 27 246-272 26-52 (178)
429 KOG3354 Gluconate kinase [Carb 96.6 0.0024 5.1E-08 57.7 4.4 47 246-294 10-56 (191)
430 KOG2543 Origin recognition com 96.6 0.012 2.5E-07 60.5 9.8 131 246-403 28-193 (438)
431 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0018 3.9E-08 63.6 4.0 31 251-281 2-35 (249)
432 COG4650 RtcR Sigma54-dependent 96.6 0.0052 1.1E-07 60.9 6.9 69 244-312 204-295 (531)
433 COG0529 CysC Adenylylsulfate k 96.6 0.005 1.1E-07 56.9 6.3 37 248-284 23-62 (197)
434 COG2874 FlaH Predicted ATPases 96.6 0.0086 1.9E-07 57.0 8.0 37 236-272 14-52 (235)
435 PLN02674 adenylate kinase 96.6 0.002 4.2E-08 63.2 3.8 31 248-278 31-61 (244)
436 COG4133 CcmA ABC-type transpor 96.6 0.0094 2E-07 55.7 8.0 24 249-272 29-52 (209)
437 PRK12339 2-phosphoglycerate ki 96.6 0.0019 4.2E-08 61.3 3.6 29 248-276 3-31 (197)
438 cd03228 ABCC_MRP_Like The MRP 96.6 0.0079 1.7E-07 55.5 7.6 27 246-272 26-52 (171)
439 cd02022 DPCK Dephospho-coenzym 96.6 0.0021 4.5E-08 59.9 3.7 29 251-280 2-30 (179)
440 cd04177 RSR1 RSR1 subgroup. R 96.5 0.0091 2E-07 54.3 7.8 22 251-272 4-25 (168)
441 PRK14021 bifunctional shikimat 96.5 0.0023 5E-08 70.1 4.3 32 250-281 8-39 (542)
442 PRK14529 adenylate kinase; Pro 96.5 0.0019 4E-08 62.6 3.2 27 251-277 3-29 (223)
443 COG0467 RAD55 RecA-superfamily 96.5 0.0031 6.7E-08 62.3 4.7 40 244-283 19-61 (260)
444 PRK04301 radA DNA repair and r 96.5 0.0074 1.6E-07 61.5 7.6 53 244-296 98-159 (317)
445 cd03286 ABC_MSH6_euk MutS6 hom 96.5 0.006 1.3E-07 58.9 6.5 63 248-310 30-120 (218)
446 cd03246 ABCC_Protease_Secretio 96.5 0.0091 2E-07 55.1 7.6 25 248-272 28-52 (173)
447 PRK00889 adenylylsulfate kinas 96.5 0.003 6.4E-08 58.4 4.3 25 248-272 4-28 (175)
448 PRK13833 conjugal transfer pro 96.5 0.0067 1.5E-07 61.9 7.1 25 248-272 144-168 (323)
449 TIGR01448 recD_rel helicase, p 96.5 0.017 3.7E-07 65.4 11.0 63 249-311 339-428 (720)
450 PRK11174 cysteine/glutathione 96.5 0.0048 1E-07 68.2 6.5 28 245-272 373-400 (588)
451 COG4178 ABC-type uncharacteriz 96.4 0.0054 1.2E-07 66.9 6.5 27 246-272 417-443 (604)
452 KOG0482 DNA replication licens 96.4 0.0036 7.7E-08 66.1 4.9 138 250-405 377-541 (721)
453 cd03238 ABC_UvrA The excision 96.4 0.01 2.3E-07 55.3 7.6 25 246-270 19-43 (176)
454 COG4088 Predicted nucleotide k 96.4 0.0036 7.8E-08 59.2 4.4 24 251-274 4-27 (261)
455 PRK05541 adenylylsulfate kinas 96.4 0.0031 6.8E-08 58.3 4.1 26 248-273 7-32 (176)
456 PRK10646 ADP-binding protein; 96.4 0.022 4.8E-07 51.8 9.4 27 248-274 28-54 (153)
457 cd03227 ABC_Class2 ABC-type Cl 96.4 0.0076 1.7E-07 55.1 6.5 65 249-313 22-113 (162)
458 PLN02459 probable adenylate ki 96.4 0.0033 7.1E-08 62.1 4.1 29 250-278 31-59 (261)
459 TIGR02236 recomb_radA DNA repa 96.4 0.0068 1.5E-07 61.5 6.6 40 244-283 91-139 (310)
460 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.0039 8.5E-08 60.8 4.7 39 244-282 17-58 (237)
461 PRK11176 lipid transporter ATP 96.4 0.006 1.3E-07 67.3 6.6 28 245-272 366-393 (582)
462 smart00173 RAS Ras subfamily o 96.4 0.017 3.6E-07 52.0 8.5 21 251-271 3-23 (164)
463 TIGR01420 pilT_fam pilus retra 96.4 0.0079 1.7E-07 62.1 7.0 26 248-273 122-147 (343)
464 PRK09270 nucleoside triphospha 96.3 0.1 2.2E-06 50.6 14.2 28 247-274 32-59 (229)
465 TIGR02322 phosphon_PhnN phosph 96.3 0.0026 5.6E-08 58.9 3.0 25 250-274 3-27 (179)
466 PRK12338 hypothetical protein; 96.3 0.0029 6.4E-08 64.2 3.6 29 248-276 4-32 (319)
467 TIGR00959 ffh signal recogniti 96.3 0.22 4.7E-06 52.9 17.7 39 247-285 98-140 (428)
468 PRK12726 flagellar biosynthesi 96.3 0.0084 1.8E-07 62.2 6.8 38 247-284 205-245 (407)
469 PLN02165 adenylate isopentenyl 96.3 0.0032 7E-08 64.2 3.8 35 248-282 43-77 (334)
470 cd01863 Rab18 Rab18 subfamily. 96.3 0.012 2.5E-07 52.9 7.0 21 251-271 3-23 (161)
471 TIGR02868 CydC thiol reductant 96.3 0.0058 1.3E-07 66.6 6.0 28 245-272 358-385 (529)
472 TIGR02788 VirB11 P-type DNA tr 96.3 0.01 2.2E-07 60.3 7.3 29 245-273 141-169 (308)
473 PF12780 AAA_8: P-loop contain 96.3 0.0064 1.4E-07 60.5 5.7 63 247-309 30-99 (268)
474 COG2274 SunT ABC-type bacterio 96.3 0.0053 1.2E-07 69.0 5.7 28 245-272 496-523 (709)
475 PF00488 MutS_V: MutS domain V 96.3 0.013 2.7E-07 57.3 7.6 63 249-311 44-134 (235)
476 cd04160 Arfrp1 Arfrp1 subfamil 96.3 0.02 4.4E-07 51.6 8.6 21 251-271 2-22 (167)
477 TIGR02238 recomb_DMC1 meiotic 96.3 0.0092 2E-07 60.8 6.9 53 244-296 92-153 (313)
478 PRK14730 coaE dephospho-CoA ki 96.3 0.0035 7.5E-08 59.4 3.6 31 250-280 3-33 (195)
479 PRK13657 cyclic beta-1,2-gluca 96.3 0.0062 1.3E-07 67.4 6.1 28 245-272 358-385 (588)
480 cd03230 ABC_DR_subfamily_A Thi 96.3 0.013 2.7E-07 54.2 7.2 26 247-272 25-50 (173)
481 PRK11545 gntK gluconate kinase 96.3 0.0032 7E-08 57.8 3.2 27 254-280 1-27 (163)
482 PRK09825 idnK D-gluconate kina 96.3 0.007 1.5E-07 56.4 5.5 27 249-275 4-30 (176)
483 TIGR02538 type_IV_pilB type IV 96.3 0.017 3.7E-07 63.6 9.3 86 211-310 293-396 (564)
484 cd04145 M_R_Ras_like M-Ras/R-R 96.3 0.019 4.1E-07 51.5 8.2 22 250-271 4-25 (164)
485 PRK13889 conjugal transfer rel 96.3 0.024 5.2E-07 65.8 10.8 62 250-311 364-445 (988)
486 cd04138 H_N_K_Ras_like H-Ras/N 96.3 0.021 4.6E-07 50.8 8.4 21 251-271 4-24 (162)
487 PF01583 APS_kinase: Adenylyls 96.3 0.0032 6.9E-08 57.5 3.0 35 250-284 4-41 (156)
488 PLN03187 meiotic recombination 96.2 0.011 2.3E-07 61.0 7.1 53 244-296 122-183 (344)
489 PRK13808 adenylate kinase; Pro 96.2 0.0035 7.6E-08 64.1 3.5 29 251-279 3-31 (333)
490 PRK13894 conjugal transfer ATP 96.2 0.015 3.2E-07 59.4 8.1 25 248-272 148-172 (319)
491 PRK09302 circadian clock prote 96.2 0.034 7.3E-07 60.5 11.4 27 244-270 27-53 (509)
492 TIGR00064 ftsY signal recognit 96.2 0.01 2.2E-07 59.3 6.7 62 222-284 46-111 (272)
493 COG5271 MDN1 AAA ATPase contai 96.2 0.042 9.1E-07 65.4 12.2 127 250-404 890-1048(4600)
494 TIGR02768 TraA_Ti Ti-type conj 96.2 0.022 4.7E-07 64.8 10.2 63 249-311 369-451 (744)
495 cd01130 VirB11-like_ATPase Typ 96.2 0.0037 7.9E-08 58.6 3.3 26 248-273 25-50 (186)
496 PRK12337 2-phosphoglycerate ki 96.2 0.01 2.2E-07 63.1 6.8 29 247-275 254-282 (475)
497 TIGR00416 sms DNA repair prote 96.2 0.013 2.9E-07 62.7 7.9 69 244-312 90-183 (454)
498 TIGR02655 circ_KaiC circadian 96.2 0.008 1.7E-07 65.0 6.3 51 244-296 17-71 (484)
499 PF06414 Zeta_toxin: Zeta toxi 96.2 0.0037 8.1E-08 59.2 3.3 39 246-284 13-52 (199)
500 PRK10416 signal recognition pa 96.2 0.0079 1.7E-07 61.4 5.7 35 247-281 113-150 (318)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-103 Score=793.15 Aligned_cols=438 Identities=49% Similarity=0.829 Sum_probs=407.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhhccCCceEEEEeecCCCcCcchhHHHHHHHhCCCCCcccc
Q 011374 13 TIMSVAASAAATFMLVQSFARHYLPHEVSAFIDVKLKNLIARFCNELTLLIEEYDDGLNQNKLFKAAKLYLEPKIPPYVK 92 (487)
Q Consensus 13 ~~~~~~~S~~a~~ml~~~~~~~~~P~~l~~~~~~~~~~l~~~~~~~~ti~I~e~~~~~~~n~~y~a~~~YL~~~~~~~~~ 92 (487)
++|+++||++|++|++|+|+++++|.+++.|+.+++++|++.++++.++.|.|+ +|+.+||+|.|+|.||++++++.+.
T Consensus 2 ~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~-~g~~~n~~~~aie~yl~~k~~~~~~ 80 (457)
T KOG0743|consen 2 SVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQ-DGVFRNQLYVAIEVYLSSKSSAIAK 80 (457)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehh-ccchHHHHHHHHHHhhhccchhhhh
Confidence 468999999999999999999999999999999999999999999999999999 8899999999999999999999999
Q ss_pred ceeeeccCCCCceEEeccCCceEEeeecCeEEEEEEEeeCCCCcccccccccccCCcceEEEEEeCCCChhHHHHhhhhH
Q 011374 93 RIKLNLAKKETNVSLSLEKNEEIVDVFNGVQLKWKFESKPDPEREVHNNQNYLVKSNITFFALRFHKKHKDTVLRTYIPH 172 (487)
Q Consensus 93 rl~~~~~~~~~~~~~~~~~~~~~~d~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~ 172 (487)
|++.+...+++++++.+++|++|.|+|+||+++|.+++..++...+. ....++|+|+|+|+++|++.|+.+||+|
T Consensus 81 rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~-----~~~~~~r~~~L~f~k~~~e~V~~syl~~ 155 (457)
T KOG0743|consen 81 RLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFV-----EREREKRYFELTFHKKPRELVTLSYLPY 155 (457)
T ss_pred hhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCccccc-----ccCCcceEEEEEecCccHHHhHHhHHHH
Confidence 99999999999999999999999999999999999999876654332 3467899999999999999999999999
Q ss_pred HHhhhhhhhhccceEEEEeecCC----CCCCCCceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCc
Q 011374 173 ILKKSKELSKKKKTLKLFTLFPY----RGDTEIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWK 248 (487)
Q Consensus 173 i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~ 248 (487)
+..++++|..+++++++|++.+. ...+..|+++.++||+||++|+|++++|++|++||..|.++++||+++|++|+
T Consensus 156 v~~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK 235 (457)
T KOG0743|consen 156 VVSKAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK 235 (457)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchh
Confidence 99999999999999999999853 22477999999999999999999999999999999999999999999999999
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchh
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDL 328 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~ 328 (487)
||||||||||||||||++||||+|++++|+++++++..+++|++++..++++||||||||||.++.+.+..+.....+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~-- 313 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFE-- 313 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeeccccccccccccccccccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999988777654332110
Q ss_pred hhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC-
Q 011374 329 YRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITE- 407 (487)
Q Consensus 329 ~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~- 407 (487)
...+.+|+|||||++||+||+||+++||||||||+++|||||+||||||+||+|++|++++++.|++|||+..+
T Consensus 314 -----~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~ 388 (457)
T KOG0743|consen 314 -----GDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEED 388 (457)
T ss_pred -----CCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCC
Confidence 12467999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCchHHHHHHHhhcCCCHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhccccccch
Q 011374 408 HPLFLEVEELIEKVEVTPADVAEQLMRDE-VPKIALSGLIQFLQIKKRETGESKATE 463 (487)
Q Consensus 408 ~~l~~~i~~l~~~~~~spa~i~~~l~~~~-~~~~al~~l~~~l~~~~~~~~~~~~~~ 463 (487)
|+++++|++++.+..+|||||++.||++. |++.||+.|++++++++.+.++..+..
T Consensus 389 h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~~~~~~~ 445 (457)
T KOG0743|consen 389 HRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKRNKDDKEL 445 (457)
T ss_pred cchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhhccchhhh
Confidence 99999999999999999999999999887 899999999999999988666554443
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-41 Score=335.51 Aligned_cols=214 Identities=27% Similarity=0.336 Sum_probs=184.8
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc---
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV--- 284 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~--- 284 (487)
.+-.|++++.|.++++++|.+.++.++++|+.|.++|+.+|+|+|||||||||||.||+|+|++.+..|+.+..+.+
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK 224 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK 224 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH
Confidence 34469999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ---cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCce
Q 011374 285 ---EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDER 359 (487)
Q Consensus 285 ---~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ 359 (487)
++..-++++|.-+ +.||||||||||++...|-..+ .+ ++..-++|+-+|||+|||+... +++
T Consensus 225 YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~--t~---------gDrEVQRTmleLL~qlDGFD~~--~nv 291 (406)
T COG1222 225 YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSG--TS---------GDREVQRTMLELLNQLDGFDPR--GNV 291 (406)
T ss_pred HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCC--CC---------chHHHHHHHHHHHHhccCCCCC--CCe
Confidence 4566778888765 5799999999999976443221 11 1455689999999999999764 569
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHhc
Q 011374 360 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLMR 434 (487)
Q Consensus 360 iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~~ 434 (487)
=||++||+++.|||||+||||||++|+||+|+.++|.+|++.+...-...-.-+++.++... ++|+|||...|..
T Consensus 292 KVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictE 367 (406)
T COG1222 292 KVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTE 367 (406)
T ss_pred EEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988765444445566666643 5999999999863
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-38 Score=328.12 Aligned_cols=215 Identities=25% Similarity=0.368 Sum_probs=188.0
Q ss_pred eecccCC-CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011374 203 QSVNLDH-PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (487)
Q Consensus 203 ~~~~~~~-p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~ 281 (487)
+.+..+- ..+|++++|.+++|+++.+.+.+++++++.|.++|..+++|+|||||||||||++|+|+|++.+.+++.+..
T Consensus 422 Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkg 501 (693)
T KOG0730|consen 422 REILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKG 501 (693)
T ss_pred hheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccC
Confidence 3333444 469999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred Ccc------cChHHHHHHHHHcc--CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcccc
Q 011374 282 SSV------EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWS 353 (487)
Q Consensus 282 ~~~------~~~~~l~~l~~~~~--~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s 353 (487)
..+ +++..++++|.++. .||||||||||.+...|+... +....+++++||++|||+..
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~--------------~~v~~RVlsqLLtEmDG~e~ 567 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS--------------SGVTDRVLSQLLTEMDGLEA 567 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc--------------cchHHHHHHHHHHHcccccc
Confidence 665 57889999998874 589999999999976543111 24468999999999999965
Q ss_pred CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhcC-CCHHHHHHHH
Q 011374 354 SCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKVE-VTPADVAEQL 432 (487)
Q Consensus 354 ~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~-~spa~i~~~l 432 (487)
. .+++||++||+|+.||+||+||||||..|++|.|+.++|.+|++.++..-...-..++++|++.++ ||+|||.++|
T Consensus 568 ~--k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lC 645 (693)
T KOG0730|consen 568 L--KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVC 645 (693)
T ss_pred c--CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHH
Confidence 4 569999999999999999999999999999999999999999999998655444567888888654 9999999998
Q ss_pred h
Q 011374 433 M 433 (487)
Q Consensus 433 ~ 433 (487)
.
T Consensus 646 q 646 (693)
T KOG0730|consen 646 Q 646 (693)
T ss_pred H
Confidence 5
No 4
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-37 Score=315.28 Aligned_cols=206 Identities=26% Similarity=0.367 Sum_probs=178.6
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc------
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------ 284 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~------ 284 (487)
.+|++|-|-++.|+++.+ +..|++.|..|.++|-..|+|+||.||||||||.||+|+|++.++|+|....+++
T Consensus 301 v~F~dVkG~DEAK~ELeE-iVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEE-IVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG 379 (752)
T ss_pred cccccccChHHHHHHHHH-HHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc
Confidence 479999999999999855 6679999999999999999999999999999999999999999999999988886
Q ss_pred cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEE
Q 011374 285 EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIII 362 (487)
Q Consensus 285 ~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI 362 (487)
.+..+++.+|..+ ..||||||||||++...|+..+. ...+.|+++||..|||+..+ +++|||
T Consensus 380 vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~--------------~y~kqTlNQLLvEmDGF~qN--eGiIvi 443 (752)
T KOG0734|consen 380 VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ--------------HYAKQTLNQLLVEMDGFKQN--EGIIVI 443 (752)
T ss_pred ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH--------------HHHHHHHHHHHHHhcCcCcC--CceEEE
Confidence 3678999999876 56999999999999876544332 24589999999999999654 569999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHHHHHHh
Q 011374 363 FTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 433 (487)
Q Consensus 363 ~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 433 (487)
++||.|+.||+||.||||||+||.+|.|+...|.+|++.|+....+.-..+..-+... .+||+||+++++-
T Consensus 444 gATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVN 515 (752)
T KOG0734|consen 444 GATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVN 515 (752)
T ss_pred eccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHH
Confidence 9999999999999999999999999999999999999999986544433344445554 4699999999874
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=308.45 Aligned_cols=221 Identities=24% Similarity=0.344 Sum_probs=189.4
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~----- 284 (487)
-.+|++|.+..+++.++...+.++.++++.|+++|+..|.|+|||||||||||.||+|+||+.+.+|+.+-...+
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYV 586 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYV 586 (802)
T ss_pred CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHh
Confidence 359999999999999999999999999999999999999999999999999999999999999999999877665
Q ss_pred -cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEE
Q 011374 285 -EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERII 361 (487)
Q Consensus 285 -~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ii 361 (487)
+++..++.+|..+ ..||||||||||++++.|+... ...+.+.+++||..|||+....| +.|
T Consensus 587 GESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--------------s~~s~RvvNqLLtElDGl~~R~g--V~v 650 (802)
T KOG0733|consen 587 GESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--------------SSVSSRVVNQLLTELDGLEERRG--VYV 650 (802)
T ss_pred hhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--------------chhHHHHHHHHHHHhcccccccc--eEE
Confidence 5788899999877 5699999999999987554322 34568899999999999977644 999
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchH--HHHHHHhh---cCCCHHHHHHHHhccC
Q 011374 362 IFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFL--EVEELIEK---VEVTPADVAEQLMRDE 436 (487)
Q Consensus 362 I~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~--~i~~l~~~---~~~spa~i~~~l~~~~ 436 (487)
|++||+|+.+|||++||||||..++++.|+.++|..|++........++.+ ++++++.. .+||+||++.++.
T Consensus 651 iaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr--- 727 (802)
T KOG0733|consen 651 IAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR--- 727 (802)
T ss_pred EeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH---
Confidence 999999999999999999999999999999999999999988755445533 34555543 4699999999884
Q ss_pred CHHHHHHHHHHHHHH
Q 011374 437 VPKIALSGLIQFLQI 451 (487)
Q Consensus 437 ~~~~al~~l~~~l~~ 451 (487)
++++-.|.+.+.+
T Consensus 728 --eAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 728 --EASILALRESLFE 740 (802)
T ss_pred --HHHHHHHHHHHhh
Confidence 5555555555553
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=300.96 Aligned_cols=220 Identities=23% Similarity=0.327 Sum_probs=186.7
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc------
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------ 284 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~------ 284 (487)
..|.++.|.+..-.++.+.+.. +++|+.|..+|..|+||+|||||||||||+||+|+|++++.|++.++..++
T Consensus 187 v~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred cchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 4799999999999999887775 999999999999999999999999999999999999999999999998876
Q ss_pred cChHHHHHHHHHcc--CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccC--CCCceE
Q 011374 285 EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSS--CGDERI 360 (487)
Q Consensus 285 ~~~~~l~~l~~~~~--~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~--~~~~~i 360 (487)
++++.++++|.++. .|||+||||||++.+.|...+. .-.++++++||+.||++... .|..++
T Consensus 266 ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqr--------------eMErRiVaQLlt~mD~l~~~~~~g~~Vl 331 (802)
T KOG0733|consen 266 ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQR--------------EMERRIVAQLLTSMDELSNEKTKGDPVL 331 (802)
T ss_pred ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHH--------------HHHHHHHHHHHHhhhcccccccCCCCeE
Confidence 57899999999884 5999999999999887665432 33588999999999999643 357799
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHHHHHHhccCCHH
Q 011374 361 IIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLMRDEVPK 439 (487)
Q Consensus 361 iI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~~~~~~~ 439 (487)
||++||+|+.|||||.|+||||..|.+..|+..+|..|++..+..-.+...-++.+++.. -+|-+||+..++. ..+.
T Consensus 332 VIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~--~Aa~ 409 (802)
T KOG0733|consen 332 VIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCR--EAAF 409 (802)
T ss_pred EEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHH--HHHH
Confidence 999999999999999999999999999999999999999998875555555566666653 3588888877764 2345
Q ss_pred HHHHHHHH
Q 011374 440 IALSGLIQ 447 (487)
Q Consensus 440 ~al~~l~~ 447 (487)
.|++.+.+
T Consensus 410 vAikR~ld 417 (802)
T KOG0733|consen 410 VAIKRILD 417 (802)
T ss_pred HHHHHHhh
Confidence 55555443
No 7
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-34 Score=273.41 Aligned_cols=211 Identities=28% Similarity=0.418 Sum_probs=181.2
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc------
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------ 284 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~------ 284 (487)
.++.++.|.+-+|++|.+.++.++...+.|+++|+.+|||+|||||||||||+|++|+|++....++.+..+.+
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEE
Q 011374 285 EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIII 362 (487)
Q Consensus 285 ~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI 362 (487)
++..-++.+|.-+ +.|+||||||||++.. .|.+.+.+. +..-+..+-.|||.|||+... .++-+|
T Consensus 232 egprmvrdvfrlakenapsiifideidaiat--krfdaqtga---------drevqril~ellnqmdgfdq~--~nvkvi 298 (408)
T KOG0727|consen 232 EGPRMVRDVFRLAKENAPSIIFIDEIDAIAT--KRFDAQTGA---------DREVQRILIELLNQMDGFDQT--TNVKVI 298 (408)
T ss_pred cCcHHHHHHHHHHhccCCcEEEeehhhhHhh--hhccccccc---------cHHHHHHHHHHHHhccCcCcc--cceEEE
Confidence 4677788888655 5799999999999965 344433221 344578899999999999765 458999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHHHHHHhc
Q 011374 363 FTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLMR 434 (487)
Q Consensus 363 ~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~~ 434 (487)
++||+.+.|||||+||||+|.+|+||+|+..+.+-++....+.-......+++.++.. -.+|.|+|...|..
T Consensus 299 matnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqe 371 (408)
T KOG0727|consen 299 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQE 371 (408)
T ss_pred EecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHH
Confidence 9999999999999999999999999999999999988887765544445567777654 56999999998853
No 8
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-34 Score=309.95 Aligned_cols=212 Identities=28% Similarity=0.379 Sum_probs=180.6
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~---- 284 (487)
.+.+|++|+|.++.|++|.+.+ .|+++|+.|+++|...|||+||+||||||||.||+|+|.+.++|++.++.+++
T Consensus 306 t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 3479999999999999998855 59999999999999999999999999999999999999999999999999886
Q ss_pred --cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceE
Q 011374 285 --EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERI 360 (487)
Q Consensus 285 --~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~i 360 (487)
...+.++.+|..+ ..||||||||||.+...+. ... .+.++.....++++||..|||+.+. .++|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~-G~~---------~~~~~~e~e~tlnQll~emDgf~~~--~~vi 452 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRG-GKG---------TGGGQDEREQTLNQLLVEMDGFETS--KGVI 452 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEeccccccccccc-ccc---------cCCCChHHHHHHHHHHHHhcCCcCC--CcEE
Confidence 3578999999877 4699999999999875442 100 0111455688999999999999765 5699
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCC-chHHHHHHHh-hcCCCHHHHHHHHh
Q 011374 361 IIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHP-LFLEVEELIE-KVEVTPADVAEQLM 433 (487)
Q Consensus 361 iI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~-l~~~i~~l~~-~~~~spa~i~~~l~ 433 (487)
++++||+++.||+||+||||||.+|+++.|+..+|..|++.|+...... ...++..+.. ...+|+|||+++|.
T Consensus 453 ~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~n 527 (774)
T KOG0731|consen 453 VLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCN 527 (774)
T ss_pred EEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999865443 2334555444 35699999999886
No 9
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=299.92 Aligned_cols=209 Identities=25% Similarity=0.361 Sum_probs=171.6
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc------
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------ 284 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~------ 284 (487)
.+||+|+|.+++|.+|++-|..++++++.|.. |...+.|+|||||||||||.||+|+|.++..+++.+..-++
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVG 747 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVG 747 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhc
Confidence 48999999999999999999999999999876 77778899999999999999999999999999998877665
Q ss_pred cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEE
Q 011374 285 EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIII 362 (487)
Q Consensus 285 ~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI 362 (487)
+++.++|++|.++ .+|||||+||+|.+.+.|.+.++. +....+++|+||.+|||+.......++||
T Consensus 748 qSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDS------------GGVMDRVVSQLLAELDgls~~~s~~VFVi 815 (953)
T KOG0736|consen 748 QSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDS------------GGVMDRVVSQLLAELDGLSDSSSQDVFVI 815 (953)
T ss_pred chHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCc------------cccHHHHHHHHHHHhhcccCCCCCceEEE
Confidence 6889999999987 469999999999998866554432 24567899999999999986566789999
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHH-HHHHHHHhhCcCCCCchHHHHHHHhh--cCCCHHHHHHHH
Q 011374 363 FTTNHKDRLDPALLRPGRMDVHIHMSYCTPCG-FKMLASNYLGITEHPLFLEVEELIEK--VEVTPADVAEQL 432 (487)
Q Consensus 363 ~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~-~~~l~~~~l~~~~~~l~~~i~~l~~~--~~~spa~i~~~l 432 (487)
++||+|+.|||||+||||||+-++++.+...+ ...+++..-..-..+-..++.++++. -++|+||+-.+|
T Consensus 816 GATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLC 888 (953)
T KOG0736|consen 816 GATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLC 888 (953)
T ss_pred ecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHH
Confidence 99999999999999999999999999997655 33444432221111112234444443 469999998877
No 10
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=271.93 Aligned_cols=212 Identities=27% Similarity=0.345 Sum_probs=176.4
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~---- 284 (487)
+..+|.++.|.+.+.++|.+.++.++.+|++|...|+.+|+|++|||+||||||.||+|+||.....|+.+-.+.+
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQky 259 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 3459999999999999999999999999999999999999999999999999999999999999999888877765
Q ss_pred --cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceE
Q 011374 285 --EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERI 360 (487)
Q Consensus 285 --~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~i 360 (487)
.+..-++++|.-+ ..|||+||||||++...|-... ++ +...-+.+.-.|||.+||+.+. +.+-
T Consensus 260 lGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~--Sg---------gerEiQrtmLELLNQldGFdsr--gDvK 326 (440)
T KOG0726|consen 260 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSN--SG---------GEREIQRTMLELLNQLDGFDSR--GDVK 326 (440)
T ss_pred hccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCC--Cc---------cHHHHHHHHHHHHHhccCcccc--CCeE
Confidence 3566778888655 5799999999999965332111 11 1344567888999999999875 5689
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHh-hcCCCHHHHHHHHh
Q 011374 361 IIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE-KVEVTPADVAEQLM 433 (487)
Q Consensus 361 iI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~i~~~l~ 433 (487)
||++||+.+.|||||+||||+|+.|+|+.|+....+.||..+-+.-...-...++.++. .-.+|+|||...|.
T Consensus 327 vimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAict 400 (440)
T KOG0726|consen 327 VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICT 400 (440)
T ss_pred EEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHH
Confidence 99999999999999999999999999999999999999876655433222334666665 45699999999885
No 11
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.6e-32 Score=282.58 Aligned_cols=213 Identities=26% Similarity=0.384 Sum_probs=175.6
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc---
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV--- 284 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~--- 284 (487)
.+..+|++|+|.+.+|++|.+.+..++.+++.|.++|..+++|+|||||||||||++|+++|++++.+++.+..+.+
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999998876654
Q ss_pred ---cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCce
Q 011374 285 ---EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDER 359 (487)
Q Consensus 285 ---~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ 359 (487)
.+...++++|..+ ..|+||||||||.++..+.... .+ .+......+..||+.+||+... .++
T Consensus 219 ~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~--~~---------~d~~~~r~l~~LL~~ld~~~~~--~~v 285 (398)
T PTZ00454 219 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ--TG---------ADREVQRILLELLNQMDGFDQT--TNV 285 (398)
T ss_pred hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccccccc--CC---------ccHHHHHHHHHHHHHhhccCCC--CCE
Confidence 2345677777654 5789999999999875331110 00 0122356788999999998654 458
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHHHHHHh
Q 011374 360 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 433 (487)
Q Consensus 360 iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 433 (487)
+||+|||+++.||||++||||||.+|+|++|+.++|..|++.++.........++..++.. .++|+|||..+|.
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~ 360 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQ 360 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998875443333456666664 4699999998874
No 12
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.1e-32 Score=270.84 Aligned_cols=222 Identities=22% Similarity=0.340 Sum_probs=180.4
Q ss_pred CCC-CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc--
Q 011374 208 DHP-ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV-- 284 (487)
Q Consensus 208 ~~p-~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~-- 284 (487)
.+| ..|++|+|..+.|+-|.+.+..++.-|++|+-+-.|| +|+|++||||||||+||+|+|.+++..|+.++.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 445 5899999999999999999999999999999987777 699999999999999999999999999999988877
Q ss_pred ---cChHHHHHHHHHc---cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCC-
Q 011374 285 ---EGNKDLRQILIAT---ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGD- 357 (487)
Q Consensus 285 ---~~~~~l~~l~~~~---~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~- 357 (487)
.....|.++|..+ -.|++|||||||.++..|...+. ++.+++.-+.||..|||+......
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~E-------------HEaSRRvKsELLvQmDG~~~t~e~~ 350 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSE-------------HEASRRVKSELLVQMDGVQGTLENS 350 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccc-------------hhHHHHHHHHHHHHhhccccccccc
Confidence 2344555555544 36999999999999875543321 566789999999999999654322
Q ss_pred -ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHhcc
Q 011374 358 -ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLMRD 435 (487)
Q Consensus 358 -~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~~~ 435 (487)
-++|+++||.||.||.||+| ||...|++|.|+.++|+.|++..+........-.++.+.+.. .||++||.++|.
T Consensus 351 k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCr-- 426 (491)
T KOG0738|consen 351 KVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCR-- 426 (491)
T ss_pred eeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHH--
Confidence 16777899999999999999 999999999999999999999999754333333455666654 599999999984
Q ss_pred CCHHHHHHHHHHHHH
Q 011374 436 EVPKIALSGLIQFLQ 450 (487)
Q Consensus 436 ~~~~~al~~l~~~l~ 450 (487)
++++..+...+.
T Consensus 427 ---eAsm~~mRR~i~ 438 (491)
T KOG0738|consen 427 ---EASMMAMRRKIA 438 (491)
T ss_pred ---HHHHHHHHHHHh
Confidence 566655554444
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.1e-32 Score=260.13 Aligned_cols=213 Identities=26% Similarity=0.352 Sum_probs=177.4
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~---- 284 (487)
+-++++-+.|.+.+.++|.+-++.+.++|+.|..+|++-|+|+|||||||||||.||+|+|++..+.++.++.+.+
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 3468899999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred --cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceE
Q 011374 285 --EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERI 360 (487)
Q Consensus 285 --~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~i 360 (487)
++..-++++|.-+ ..|+|||+||||.+...+...+.. +++.-+.+.-.|||.+||+... .++-
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~g-----------gdsevqrtmlellnqldgfeat--knik 288 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSG-----------GDSEVQRTMLELLNQLDGFEAT--KNIK 288 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCC-----------ccHHHHHHHHHHHHhccccccc--cceE
Confidence 4556678888655 579999999999997644322211 1445678889999999999765 5588
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHhc
Q 011374 361 IIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLMR 434 (487)
Q Consensus 361 iI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~~ 434 (487)
+|++||+.+-|||||+||||+|..|+||+|+.++|.+|++.+-..-...-.-.+..+.+.. +.|+|++...|..
T Consensus 289 vimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcte 363 (404)
T KOG0728|consen 289 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTE 363 (404)
T ss_pred EEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhh
Confidence 9999999999999999999999999999999999999998776543322233445555543 4889999888853
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.1e-32 Score=255.30 Aligned_cols=216 Identities=24% Similarity=0.315 Sum_probs=174.6
Q ss_pred cccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc
Q 011374 205 VNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV 284 (487)
Q Consensus 205 ~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~ 284 (487)
+.-.+..+++++.|.+.+.+++++.+..++.+++.|..+|+.+|+|+|+|||||||||.+|+|.|...+..+..+-...+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 33444568999999999999999999999999999999999999999999999999999999999999888876654443
Q ss_pred ------cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCC
Q 011374 285 ------EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCG 356 (487)
Q Consensus 285 ------~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~ 356 (487)
.+..-++..|.-+ ..|+||||||+|.+...| .+... .|+..-+++.-.|||.+||+.+.
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKR--fDSek---------~GDREVQRTMLELLNQLDGFss~-- 308 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKR--FDSEK---------AGDREVQRTMLELLNQLDGFSSD-- 308 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccc--ccccc---------cccHHHHHHHHHHHHhhcCCCCc--
Confidence 2345556666544 579999999999996533 22111 12455678889999999999654
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 357 DERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 357 ~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
+.+-||++||+.+-|||||+|.||+|+.|+||.|+.++|..|++.+-..-.......+++|...+ .|.+|+....|.
T Consensus 309 ~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcV 386 (424)
T KOG0652|consen 309 DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCV 386 (424)
T ss_pred cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeeh
Confidence 66889999999999999999999999999999999999999998877655444444556666544 488888776664
No 15
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-31 Score=284.66 Aligned_cols=232 Identities=26% Similarity=0.329 Sum_probs=188.4
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~---- 284 (487)
...+|.+++|.++.|+++.+.+ .|+++|..|.++|...|+|+||+||||||||+||+|+|++.+.|++.++.+++
T Consensus 145 ~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 3468999999999999997755 69999999999999999999999999999999999999999999999999886
Q ss_pred --cChHHHHHHHHHcc--CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceE
Q 011374 285 --EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERI 360 (487)
Q Consensus 285 --~~~~~l~~l~~~~~--~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~i 360 (487)
.+.+.+|.+|.++. .||||||||||.....|... -+.++.....|+++||.+|||+..+ +++|
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g-----------~GggnderEQTLNQlLvEmDGF~~~--~gvi 290 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG-----------LGGGNDEREQTLNQLLVEMDGFGGN--EGVI 290 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCC-----------CCCCchHHHHHHHHHHhhhccCCCC--CceE
Confidence 47899999999885 49999999999986433221 0112445568999999999999643 5699
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHHHHHHhc-----
Q 011374 361 IIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLMR----- 434 (487)
Q Consensus 361 iI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~~----- 434 (487)
|+++||+|+-|||||+||||||++|.++.|+...|+++++-+.......-..++..+... -.++.|++++.+..
T Consensus 291 viaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~a 370 (596)
T COG0465 291 VIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLA 370 (596)
T ss_pred EEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999977764433333344445544 45999999998841
Q ss_pred ---------cCCHHHHHHHHHHHHHHHHh
Q 011374 435 ---------DEVPKIALSGLIQFLQIKKR 454 (487)
Q Consensus 435 ---------~~~~~~al~~l~~~l~~~~~ 454 (487)
..+-+.|.+.++-..+.+.+
T Consensus 371 ar~n~~~i~~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 371 ARRNKKEITMRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred HHhcCeeEeccchHHHHHHHhcCcCcCCc
Confidence 23455666666655555443
No 16
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=6.4e-31 Score=278.67 Aligned_cols=182 Identities=27% Similarity=0.406 Sum_probs=151.2
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcE----------EE
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV----------YD 278 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v----------~~ 278 (487)
++.+|++|+|.++++++|.+.+..++.+++.|...|.++++|+|||||||||||++|+++|++++.++ +.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 45699999999999999999999999999999999999999999999999999999999999997652 23
Q ss_pred eecCcc------cChHHHHHHHHHcc------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHH
Q 011374 279 LELSSV------EGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLN 346 (487)
Q Consensus 279 l~~~~~------~~~~~l~~l~~~~~------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 346 (487)
+..+.+ ++...++.+|..+. .|+||||||||.++..+..... +......+++||+
T Consensus 257 v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s-------------~d~e~~il~~LL~ 323 (512)
T TIGR03689 257 IKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS-------------SDVETTVVPQLLS 323 (512)
T ss_pred ccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc-------------chHHHHHHHHHHH
Confidence 332222 23456677776542 5899999999999764321100 1223567899999
Q ss_pred HhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011374 347 FIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 405 (487)
Q Consensus 347 ~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 405 (487)
.|||+.+. ++++||+|||+++.|||||+||||||.+|+|++|+.+++++|+++|+..
T Consensus 324 ~LDgl~~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 324 ELDGVESL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred HhcccccC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 99999754 4599999999999999999999999999999999999999999999864
No 17
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=1.9e-30 Score=270.27 Aligned_cols=212 Identities=28% Similarity=0.349 Sum_probs=173.7
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~---- 284 (487)
+..+|++|+|.++++++|.+.+..++.+++.|+.+|..+++|+|||||||||||++|+++|++++.+++.++++.+
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~ 205 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKF 205 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhh
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred --cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceE
Q 011374 285 --EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERI 360 (487)
Q Consensus 285 --~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~i 360 (487)
.+...++.+|..+ ..|+||||||||.++..+...... +......++..||+.+||+... .+++
T Consensus 206 ~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~-----------~~~~~~~~l~~lL~~ld~~~~~--~~v~ 272 (389)
T PRK03992 206 IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTS-----------GDREVQRTLMQLLAEMDGFDPR--GNVK 272 (389)
T ss_pred ccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCC-----------ccHHHHHHHHHHHHhccccCCC--CCEE
Confidence 2345677777665 468999999999997533211100 0122345778899999987543 4689
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHHHHHHh
Q 011374 361 IIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 433 (487)
Q Consensus 361 iI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 433 (487)
||+|||+++.+|+|++||||||..|+|+.|+.++|.+|++.++.........++..++.. .+++++||..+|.
T Consensus 273 VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~ 346 (389)
T PRK03992 273 IIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICT 346 (389)
T ss_pred EEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999998875433323345666654 4599999998875
No 18
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=3.8e-30 Score=288.21 Aligned_cols=220 Identities=25% Similarity=0.335 Sum_probs=182.5
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~----- 284 (487)
..+|++++|.+++|+.|.+.+..++.+++.|.++|..+++|+|||||||||||++|+++|++++.+++.+..+.+
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~v 528 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWV 528 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhccc
Confidence 358999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred -cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEE
Q 011374 285 -EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERII 361 (487)
Q Consensus 285 -~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ii 361 (487)
++...++.+|..+ ..||||||||||.++..+..... .......+++||..|||+... .+++|
T Consensus 529 Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~-------------~~~~~~~~~~lL~~ldg~~~~--~~v~v 593 (733)
T TIGR01243 529 GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD-------------TSVTDRIVNQLLTEMDGIQEL--SNVVV 593 (733)
T ss_pred CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC-------------ccHHHHHHHHHHHHhhcccCC--CCEEE
Confidence 3567889999776 46899999999999763321100 123467889999999998653 56999
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHhccCCHHH
Q 011374 362 IFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLMRDEVPKI 440 (487)
Q Consensus 362 I~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~~~~~~~~ 440 (487)
|+|||+|+.||||++||||||.+|++|+|+.++|.+|++.+..........++..++... ++|+|||...|. ++
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~-----~A 668 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCR-----EA 668 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHH-----HH
Confidence 999999999999999999999999999999999999999887654433344567777654 599999998773 44
Q ss_pred HHHHHHHHH
Q 011374 441 ALSGLIQFL 449 (487)
Q Consensus 441 al~~l~~~l 449 (487)
++..+.+.+
T Consensus 669 ~~~a~~~~~ 677 (733)
T TIGR01243 669 AMAALRESI 677 (733)
T ss_pred HHHHHHHHh
Confidence 444444443
No 19
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=4.8e-30 Score=275.51 Aligned_cols=212 Identities=26% Similarity=0.369 Sum_probs=174.7
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc---
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV--- 284 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~--- 284 (487)
.+..+|++++|.+++|+++.+.+ .++++++.|...|..+++|+|||||||||||++|+++|++++.+++.++.+.+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~-~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIV-DFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHH-HHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 34569999999999999998755 57899999999999999999999999999999999999999999999987765
Q ss_pred ---cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCce
Q 011374 285 ---EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDER 359 (487)
Q Consensus 285 ---~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ 359 (487)
.+...++.+|..+ ..|+||||||||.+...+..... .++.....+++.||+.||++... +++
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~-----------~~~~~~~~~~~~lL~~~d~~~~~--~~v 194 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLG-----------GGNDEREQTLNQLLVEMDGFGTN--TGV 194 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcC-----------CccHHHHHHHHHHHhhhccccCC--CCe
Confidence 2456788899776 46899999999999753322100 00223357889999999998654 458
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 360 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 360 iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
+||+|||+++.|||||+||||||.+|+++.|+.++|.+|++.++.........++..+.... ++|++||...+.
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLN 269 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998755443344566666654 599999998875
No 20
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=2.7e-30 Score=270.44 Aligned_cols=214 Identities=26% Similarity=0.335 Sum_probs=174.5
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc--
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV-- 284 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~-- 284 (487)
..++.+|++|+|.++++++|.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+++.+..+.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 345579999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred ----cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCc
Q 011374 285 ----EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDE 358 (487)
Q Consensus 285 ----~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~ 358 (487)
.+...++.+|..+ ..|+||||||||.++..+...... +......++..||+.+||+... .+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sg-----------g~~e~qr~ll~LL~~Ldg~~~~--~~ 322 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSG-----------GEKEIQRTMLELLNQLDGFDSR--GD 322 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCc-----------ccHHHHHHHHHHHHHHhhhccc--CC
Confidence 2344567777654 468999999999987533211100 0122356678899999998543 45
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHHHHHHh
Q 011374 359 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 433 (487)
Q Consensus 359 ~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 433 (487)
+.||+|||+++.||||++||||||.+|+|+.|+.+++.+|++.++.........++..++.. .++|+|||..+|.
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~ 398 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICT 398 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999998865433333356666654 4699999998774
No 21
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-30 Score=272.79 Aligned_cols=233 Identities=22% Similarity=0.306 Sum_probs=195.6
Q ss_pred CCceecccCCCC--CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEE
Q 011374 200 EIWQSVNLDHPA--TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (487)
Q Consensus 200 ~~w~~~~~~~p~--~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~ 277 (487)
...+.+.+..+. .|++++|..++|+-+.+-++++.+.+..|...+.+.+.|+|||||||||||.||.|+|...++.++
T Consensus 651 ~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fi 730 (952)
T KOG0735|consen 651 LALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFI 730 (952)
T ss_pred HHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEE
Confidence 345666665554 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCcc------cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhh
Q 011374 278 DLELSSV------EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFID 349 (487)
Q Consensus 278 ~l~~~~~------~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD 349 (487)
.+..-++ .++..+|.+|.++ ..|||||+||+|.+.+.|.... .....+.+++||..||
T Consensus 731 svKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs--------------TGVTDRVVNQlLTelD 796 (952)
T KOG0735|consen 731 SVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS--------------TGVTDRVVNQLLTELD 796 (952)
T ss_pred EecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC--------------CCchHHHHHHHHHhhc
Confidence 9877665 4788999999876 5799999999999976442211 2345788999999999
Q ss_pred ccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHH
Q 011374 350 GLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADV 428 (487)
Q Consensus 350 gl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i 428 (487)
|...- .++.|+++|.+|+.|||||+||||+|.+++-+.|+..+|.+|++..-.....+...+++.+... .++|+||+
T Consensus 797 G~Egl--~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADl 874 (952)
T KOG0735|consen 797 GAEGL--DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADL 874 (952)
T ss_pred ccccc--ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhH
Confidence 98653 5699999999999999999999999999999999999999999887665555556677777765 45999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHH
Q 011374 429 AEQLMRDEVPKIALSGLIQFLQIKK 453 (487)
Q Consensus 429 ~~~l~~~~~~~~al~~l~~~l~~~~ 453 (487)
+.+|- ++-+..+-+++.+..
T Consensus 875 q~ll~-----~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 875 QSLLY-----NAQLAAVHEILKRED 894 (952)
T ss_pred HHHHH-----HHHHHHHHHHHHhcC
Confidence 99884 455666666666544
No 22
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=1.2e-29 Score=269.31 Aligned_cols=204 Identities=18% Similarity=0.245 Sum_probs=164.8
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~----- 284 (487)
+.+|++|+|.+.+|+.+.+....|. ..+.+.|.++++|+|||||||||||++|+++|++++.+++.++++.+
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 4589999999999999887665553 33466799999999999999999999999999999999999998765
Q ss_pred -cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEE
Q 011374 285 -EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERII 361 (487)
Q Consensus 285 -~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ii 361 (487)
+++..++++|..+ ..||||||||||.++..+...+. .......++.|+..|++. ...++|
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d-------------~~~~~rvl~~lL~~l~~~----~~~V~v 363 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGD-------------SGTTNRVLATFITWLSEK----KSPVFV 363 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCC-------------chHHHHHHHHHHHHHhcC----CCceEE
Confidence 3567888998754 57999999999998753211100 223467788889888853 346899
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc--hHHHHHHHhh-cCCCHHHHHHHHh
Q 011374 362 IFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL--FLEVEELIEK-VEVTPADVAEQLM 433 (487)
Q Consensus 362 I~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l--~~~i~~l~~~-~~~spa~i~~~l~ 433 (487)
|+|||+++.||||++||||||..|+++.|+.++|++|++.++....... ..++..++.. .+||+|||...+.
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~ 438 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSII 438 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997643221 3456677765 4699999988774
No 23
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=240.47 Aligned_cols=205 Identities=20% Similarity=0.318 Sum_probs=171.6
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~---- 284 (487)
...+||+++|+++.|+.- ..|..|+.+|+.|.. --|+++|+|||||||||++|+|+|++.+.+++.+..+.+
T Consensus 116 ~~it~ddViGqEeAK~kc-rli~~yLenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 116 SDITLDDVIGQEEAKRKC-RLIMEYLENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred ccccHhhhhchHHHHHHH-HHHHHHhhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 345899999999998875 557779999987755 458899999999999999999999999999999998887
Q ss_pred --cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceE
Q 011374 285 --EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERI 360 (487)
Q Consensus 285 --~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~i 360 (487)
.....+++++..+ ..|||+||||+|++.- +|.-+.- ..+-..+++.||..|||+.+ +++++
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaL--dRryQel-----------RGDVsEiVNALLTelDgi~e--neGVv 256 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIAL--DRRYQEL-----------RGDVSEIVNALLTELDGIKE--NEGVV 256 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhh--hhhHHHh-----------cccHHHHHHHHHHhccCccc--CCceE
Confidence 2456788888776 4699999999999853 2322211 24456789999999999975 46799
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHhc
Q 011374 361 IIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLMR 434 (487)
Q Consensus 361 iI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~~ 434 (487)
.|++||+|+.||||+.+ ||...|+|..|+.+++..|++.|...-..+....++.+.... ++|+.||.+-+++
T Consensus 257 tIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK 329 (368)
T COG1223 257 TIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLK 329 (368)
T ss_pred EEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHH
Confidence 99999999999999999 999999999999999999999999876666666677777654 5999999998864
No 24
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.3e-30 Score=244.55 Aligned_cols=217 Identities=24% Similarity=0.284 Sum_probs=175.1
Q ss_pred eecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecC
Q 011374 203 QSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282 (487)
Q Consensus 203 ~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~ 282 (487)
..+.-.+-.|+.++.|-.++.+.|.+-++.++-+++.|-++|+.+|+|+|||||||||||.+|+|+||..+.-++.+-.+
T Consensus 166 m~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigs 245 (435)
T KOG0729|consen 166 MQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS 245 (435)
T ss_pred EEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhH
Confidence 34434444699999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred cc------cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccC
Q 011374 283 SV------EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSS 354 (487)
Q Consensus 283 ~~------~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~ 354 (487)
.+ ++..-++++|.-+ ..-||||+||||++.+.+=..+. .++..-+.+.-.|+|.+||+...
T Consensus 246 elvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~-----------ggdnevqrtmleli~qldgfdpr 314 (435)
T KOG0729|consen 246 ELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGA-----------GGDNEVQRTMLELINQLDGFDPR 314 (435)
T ss_pred HHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCC-----------CCcHHHHHHHHHHHHhccCCCCC
Confidence 76 3456678888765 34699999999999764321111 01344577888999999999654
Q ss_pred CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCC---CchHHHHHHHhhcCCCHHHHHHH
Q 011374 355 CGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEH---PLFLEVEELIEKVEVTPADVAEQ 431 (487)
Q Consensus 355 ~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~---~l~~~i~~l~~~~~~spa~i~~~ 431 (487)
+++-|+++||+|+.|||||+||||+|..++|+.|+.+.|..|++.+...-.. .-++-+..|++ +-|+|+|...
T Consensus 315 --gnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcp--nstgaeirsv 390 (435)
T KOG0729|consen 315 --GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCP--NSTGAEIRSV 390 (435)
T ss_pred --CCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCC--CCcchHHHHH
Confidence 5688999999999999999999999999999999999999998776653322 22344444444 4788999888
Q ss_pred Hhc
Q 011374 432 LMR 434 (487)
Q Consensus 432 l~~ 434 (487)
|..
T Consensus 391 cte 393 (435)
T KOG0729|consen 391 CTE 393 (435)
T ss_pred HHH
Confidence 864
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.6e-29 Score=267.46 Aligned_cols=214 Identities=29% Similarity=0.411 Sum_probs=181.8
Q ss_pred ecccCCC-CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecC
Q 011374 204 SVNLDHP-ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282 (487)
Q Consensus 204 ~~~~~~p-~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~ 282 (487)
.+.+..| .+|++++|....|+.+.+.+..++..++.|.+.|..+++|+|||||||||||+||+|+|++++.+++.++.+
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 3334444 599999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cc------cChHHHHHHHHHcc--CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccC
Q 011374 283 SV------EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSS 354 (487)
Q Consensus 283 ~~------~~~~~l~~l~~~~~--~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~ 354 (487)
++ +++..++++|..+. .||||||||||.++..+.... +......+++||..|||+...
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~--------------~~~~~r~~~~lL~~~d~~e~~ 376 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE--------------DGSGRRVVGQLLTELDGIEKA 376 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC--------------chHHHHHHHHHHHHhcCCCcc
Confidence 76 46789999998875 699999999999986442211 112258999999999999654
Q ss_pred CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCch--HHHHHHHhh-cCCCHHHHHHH
Q 011374 355 CGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF--LEVEELIEK-VEVTPADVAEQ 431 (487)
Q Consensus 355 ~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~--~~i~~l~~~-~~~spa~i~~~ 431 (487)
.+++||+|||+|+.+|||++||||||..|+++.|+.+++..+++.++......+. ...+.+... ..+|++||...
T Consensus 377 --~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i 454 (494)
T COG0464 377 --EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAAL 454 (494)
T ss_pred --CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHH
Confidence 5599999999999999999999999999999999999999999999986555432 244455553 34999999998
Q ss_pred Hh
Q 011374 432 LM 433 (487)
Q Consensus 432 l~ 433 (487)
+.
T Consensus 455 ~~ 456 (494)
T COG0464 455 VR 456 (494)
T ss_pred HH
Confidence 84
No 26
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=8.8e-29 Score=270.10 Aligned_cols=212 Identities=28% Similarity=0.365 Sum_probs=173.4
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc--
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-- 285 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~-- 285 (487)
....+|++++|.+++|+++.+ +..|++.++.|..+|..+++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~e-iv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEE-VVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHH-HHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 345699999999999998855 55789999999999999999999999999999999999999999999999887652
Q ss_pred ----ChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCce
Q 011374 286 ----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDER 359 (487)
Q Consensus 286 ----~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ 359 (487)
....++.+|..+ ..||||||||||++...+..... .++.....++..||..|||+... .++
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~-----------~~~~e~~~~L~~LL~~~dg~~~~--~~V 322 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIG-----------GGNDEREQTLNQLLTEMDGFKGN--KGV 322 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCC-----------CCcHHHHHHHHHHHhhhccccCC--CCe
Confidence 346778888776 46899999999999753321100 00233457899999999998654 458
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 360 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 360 iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
+||+|||+++.|||||+||||||.+|+++.|+.++|.+|++.++..........+..+.... +++++||.+.+.
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvn 397 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLN 397 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999764333344556666654 499999998875
No 27
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.2e-30 Score=247.26 Aligned_cols=208 Identities=25% Similarity=0.343 Sum_probs=175.4
Q ss_pred cCCC-CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc-
Q 011374 207 LDHP-ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV- 284 (487)
Q Consensus 207 ~~~p-~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~- 284 (487)
.+.| ..|++|+|.+..|+.+.+.+..+++.|++|.---+|| +|+|||||||||||.||+|+|.+.+..++.++.+++
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLv 203 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 203 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHH
Confidence 3444 4789999999999999999999999999997644444 799999999999999999999999999999998887
Q ss_pred -----cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCC
Q 011374 285 -----EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGD 357 (487)
Q Consensus 285 -----~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~ 357 (487)
+++.-++++|.-+ ..|+||||||||.+++.+.... +..++++-..||..|.|+-.. .+
T Consensus 204 SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE--------------seasRRIKTEfLVQMqGVG~d-~~ 268 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE--------------SEASRRIKTEFLVQMQGVGND-ND 268 (439)
T ss_pred HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc--------------hHHHHHHHHHHHHhhhccccC-CC
Confidence 4566677887655 5699999999998876443221 344678889999999998533 45
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc-hHHHHHHHhhc-CCCHHHHHHHH
Q 011374 358 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL-FLEVEELIEKV-EVTPADVAEQL 432 (487)
Q Consensus 358 ~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~spa~i~~~l 432 (487)
+++|+++||-|+.||.|++| ||+..|++|.|...+|..+++.+++...|.| ..++..|...+ ++|++||.-++
T Consensus 269 gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivV 343 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVV 343 (439)
T ss_pred ceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEe
Confidence 78999999999999999999 9999999999999999999999999888887 45788887765 49999986443
No 28
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-28 Score=245.69 Aligned_cols=221 Identities=20% Similarity=0.306 Sum_probs=186.1
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhc-CCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc----
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE---- 285 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g-~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~---- 285 (487)
.+|+++.|.+++|+.+.+.+..++.++++|..-+ ..+++|+|||||||||||++|+|+|.+.+.+++.+..+.+.
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 3799999999999999999999999999998433 24779999999999999999999999999999999999873
Q ss_pred --ChHHHHHHHHHcc--CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEE
Q 011374 286 --GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERII 361 (487)
Q Consensus 286 --~~~~l~~l~~~~~--~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ii 361 (487)
.++-++.+|.-+. +||||||||||.++..|...+ ++.....-.+|...+||+.+..+..++|
T Consensus 169 gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~d--------------HEa~a~mK~eFM~~WDGl~s~~~~rVlV 234 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTD--------------HEATAMMKNEFMALWDGLSSKDSERVLV 234 (386)
T ss_pred HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccch--------------HHHHHHHHHHHHHHhccccCCCCceEEE
Confidence 3445556665443 599999999999987652211 3445677888999999998876666888
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHhccCCHHH
Q 011374 362 IFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLMRDEVPKI 440 (487)
Q Consensus 362 I~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~~~~~~~~ 440 (487)
+++||+|..||.|++| ||...++++.|+.++|++|++-+|..+.....-++.++...+ +||+.|+.+.|. .+
T Consensus 235 lgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~-----~A 307 (386)
T KOG0737|consen 235 LGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCR-----LA 307 (386)
T ss_pred EeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHH-----HH
Confidence 8999999999999999 999999999999999999999999887665555677777654 599999999994 67
Q ss_pred HHHHHHHHHHHH
Q 011374 441 ALSGLIQFLQIK 452 (487)
Q Consensus 441 al~~l~~~l~~~ 452 (487)
|+..+.+.++..
T Consensus 308 a~~~ire~~~~~ 319 (386)
T KOG0737|consen 308 ALRPIRELLVSE 319 (386)
T ss_pred hHhHHHHHHHhc
Confidence 777777777775
No 29
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=3.2e-28 Score=244.56 Aligned_cols=208 Identities=20% Similarity=0.190 Sum_probs=152.4
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc---
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV--- 284 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~--- 284 (487)
....+|+++.|.-.+-...++.+.... .+.+....|+.+|+|++||||||||||.+|+++|++++.+++.++..++
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi-~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHI-AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHH-HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 344577777544333333333222211 1344455789999999999999999999999999999999999998887
Q ss_pred ---cChHHHHHHHHHcc-------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc---
Q 011374 285 ---EGNKDLRQILIATE-------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL--- 351 (487)
Q Consensus 285 ---~~~~~l~~l~~~~~-------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl--- 351 (487)
+++..++++|..+. +||||||||||.+++.+...+ . ....+.....||+.+|+.
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~--~-----------tv~~qiV~~tLLnl~D~p~~v 254 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ--Y-----------TVNNQMVNGTLMNIADNPTNV 254 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC--c-----------chHHHHHHHHHHHHhcCCccc
Confidence 46789999997664 599999999999986442110 0 112345568999998863
Q ss_pred -----c--cCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhcCCC
Q 011374 352 -----W--SSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKVEVT 424 (487)
Q Consensus 352 -----~--s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~s 424 (487)
| ......++||+|||+|+.|||||+||||||..+ ..|+.++|..|++.++...+.+ ..++..++..+.--
T Consensus 255 ~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq 331 (413)
T PLN00020 255 SLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQ 331 (413)
T ss_pred cccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCC
Confidence 4 122346899999999999999999999999965 5899999999999999865443 57788888765444
Q ss_pred HHHHHHHH
Q 011374 425 PADVAEQL 432 (487)
Q Consensus 425 pa~i~~~l 432 (487)
+.|....|
T Consensus 332 ~~Df~GAl 339 (413)
T PLN00020 332 PLDFFGAL 339 (413)
T ss_pred CchhhhHH
Confidence 44444444
No 30
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.4e-29 Score=240.75 Aligned_cols=208 Identities=25% Similarity=0.339 Sum_probs=169.0
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc------
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE------ 285 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~------ 285 (487)
+|+.+.|.-++..++++.++.++.++..|.++|+.+|.|++||||||||||.+++++|..++.+++.+..+.+.
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGE 209 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGE 209 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999888873
Q ss_pred ChHHHHHHHHHcc--CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEE
Q 011374 286 GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIF 363 (487)
Q Consensus 286 ~~~~l~~l~~~~~--~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~ 363 (487)
+..-+++.|..+. .|||||+||||+..+.+- .+..+. +..-+.||-.|+|.|||+..- ..+-+|+
T Consensus 210 saRlIRemf~yA~~~~pciifmdeiDAigGRr~--se~Ts~---------dreiqrTLMeLlnqmdgfd~l--~rVk~Im 276 (388)
T KOG0651|consen 210 SARLIRDMFRYAREVIPCIIFMDEIDAIGGRRF--SEGTSS---------DREIQRTLMELLNQMDGFDTL--HRVKTIM 276 (388)
T ss_pred HHHHHHHHHHHHhhhCceEEeehhhhhhccEEe--ccccch---------hHHHHHHHHHHHHhhccchhc--ccccEEE
Confidence 3456778887664 589999999999876431 111110 344578999999999998654 4588999
Q ss_pred ecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC---CCCchHHHHHHHhhcCCCHHHHHHHHhc
Q 011374 364 TTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT---EHPLFLEVEELIEKVEVTPADVAEQLMR 434 (487)
Q Consensus 364 TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~---~~~l~~~i~~l~~~~~~spa~i~~~l~~ 434 (487)
|||+|+.|||||+||||+|..++.|.|+...+..+++-+-..- +.-.++.+..+.+ .+..+++.+.|..
T Consensus 277 atNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d--~f~gad~rn~~tE 348 (388)
T KOG0651|consen 277 ATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVD--GFNGADLRNVCTE 348 (388)
T ss_pred ecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHh--ccChHHHhhhccc
Confidence 9999999999999999999999999999999998776544321 1122344444444 4777887776654
No 31
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=1.4e-27 Score=247.13 Aligned_cols=213 Identities=26% Similarity=0.330 Sum_probs=169.2
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc--
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-- 285 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~-- 285 (487)
.+..+|++++|.++++++|.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|+.++.+++.+..+.+.
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 345689999999999999999999999999999999999999999999999999999999999999999888765541
Q ss_pred ----ChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCce
Q 011374 286 ----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDER 359 (487)
Q Consensus 286 ----~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ 359 (487)
....++.+|..+ ..|+||||||||.+...+...... +......++..+++.+|++... .++
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~-----------~~~~~~~~l~~ll~~ld~~~~~--~~v 262 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTS-----------GDREVQRTLMQLLAELDGFDPR--GNV 262 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCC-----------ccHHHHHHHHHHHHHhhCCCCC--CCE
Confidence 234456666544 468999999999986532211000 0122356778889999987433 458
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 360 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 360 iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
.||+|||+++.+|++++||||||..|+++.|+.+++..|++.++.........++..+.... +++++||..++.
T Consensus 263 ~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~ 337 (364)
T TIGR01242 263 KVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICT 337 (364)
T ss_pred EEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988654332223455555543 599999988764
No 32
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.95 E-value=8e-28 Score=202.27 Aligned_cols=97 Identities=41% Similarity=0.755 Sum_probs=93.5
Q ss_pred hCcHHHHHHHHHHHHHHhh-ccCCceEEEEeecCCCcCcchhHHHHHHHhCCCCCccccceeeeccCCCCceEEeccCCc
Q 011374 35 YLPHEVSAFIDVKLKNLIA-RFCNELTLLIEEYDDGLNQNKLFKAAKLYLEPKIPPYVKRIKLNLAKKETNVSLSLEKNE 113 (487)
Q Consensus 35 ~~P~~l~~~~~~~~~~l~~-~~~~~~ti~I~e~~~~~~~n~~y~a~~~YL~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~ 113 (487)
|||++||+++.++++++++ +++||+||+|+|+ +|+.+|++|+||++||+++++++++||++++++++++++++|++||
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~-~g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~e 79 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEF-DGLSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDGE 79 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeC-CCccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCCC
Confidence 6899999999999988776 8999999999999 7999999999999999999999999999999999999999999999
Q ss_pred eEEeeecCeEEEEEEEeeC
Q 011374 114 EIVDVFNGVQLKWKFESKP 132 (487)
Q Consensus 114 ~~~d~f~g~~~~w~~~~~~ 132 (487)
+|+|+|+||++||.+++++
T Consensus 80 ~V~D~F~Gv~v~W~~~~~e 98 (98)
T PF14363_consen 80 EVVDVFEGVKVWWSSVCTE 98 (98)
T ss_pred EEEEEECCEEEEEEEEccC
Confidence 9999999999999999864
No 33
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=1.8e-27 Score=273.02 Aligned_cols=178 Identities=17% Similarity=0.161 Sum_probs=140.3
Q ss_pred cHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccC-----------------------------
Q 011374 236 RKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG----------------------------- 286 (487)
Q Consensus 236 ~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~----------------------------- 286 (487)
++.++.++|..+++|+||+||||||||+||+|+|++.++|++.++++++..
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 456778999999999999999999999999999999999999988766421
Q ss_pred --------------------hHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhH
Q 011374 287 --------------------NKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGL 344 (487)
Q Consensus 287 --------------------~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 344 (487)
...++.+|..+ .+||||+|||||.+.. ......+++.|
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~--------------------~ds~~ltL~qL 1757 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNV--------------------NESNYLSLGLL 1757 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCC--------------------CccceehHHHH
Confidence 11256677665 5699999999999853 11224568999
Q ss_pred HHHhhccccC-CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCch---HHHHHHHhh
Q 011374 345 LNFIDGLWSS-CGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF---LEVEELIEK 420 (487)
Q Consensus 345 L~~lDgl~s~-~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~---~~i~~l~~~ 420 (487)
|+.|||.... ...++|||+|||+|+.|||||+||||||.+|+++.|+..+|++++...+...+..+. .++..++..
T Consensus 1758 LneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~ 1837 (2281)
T CHL00206 1758 VNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSI 1837 (2281)
T ss_pred HHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHh
Confidence 9999987432 235689999999999999999999999999999999999998887754432222222 235556554
Q ss_pred -cCCCHHHHHHHHh
Q 011374 421 -VEVTPADVAEQLM 433 (487)
Q Consensus 421 -~~~spa~i~~~l~ 433 (487)
.++|+||+++++-
T Consensus 1838 T~GfSGADLanLvN 1851 (2281)
T CHL00206 1838 TMGSNARDLVALTN 1851 (2281)
T ss_pred CCCCCHHHHHHHHH
Confidence 4699999999874
No 34
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=1.9e-26 Score=253.98 Aligned_cols=210 Identities=23% Similarity=0.348 Sum_probs=170.6
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~----- 284 (487)
..+|+++.|.+..++++.+.+ .++..+..|..+|...++|+||+||||||||++++++|++++.+++.++.+++
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~-~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHH-HHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 458999999999999986644 56788888899999999999999999999999999999999999999988764
Q ss_pred -cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEE
Q 011374 285 -EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERII 361 (487)
Q Consensus 285 -~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ii 361 (487)
.....++.+|..+ ..||||||||||.+...+..... .++.....+++.||..|||+... +.+++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~-----------g~~~~~~~~ln~lL~~mdg~~~~--~~viv 293 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG-----------GGHDEREQTLNQMLVEMDGFEGN--EGIIV 293 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCC-----------CCchHHHHHHHHHHHhhhcccCC--CCeeE
Confidence 2456778888765 46899999999999753321100 00223457899999999998654 45999
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHHHHHHh
Q 011374 362 IFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 433 (487)
Q Consensus 362 I~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 433 (487)
|+|||+|+.||||++||||||.+|+++.|+.++|.+|++.++.........++..+... .++|+|||.+++.
T Consensus 294 IaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~ 366 (644)
T PRK10733 294 IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 366 (644)
T ss_pred EEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999975433323345555554 4699999999985
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=2.3e-25 Score=249.80 Aligned_cols=208 Identities=27% Similarity=0.381 Sum_probs=171.4
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~----- 284 (487)
..+|++|+|.+++++.|.+.+..++.+++.|+.+|..+++|+|||||||||||+|++++|++++.+++.++...+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~ 253 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYY 253 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccc
Confidence 458999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred -cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEE
Q 011374 285 -EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERII 361 (487)
Q Consensus 285 -~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ii 361 (487)
.....++.+|..+ ..|+||||||||.+...+.... ......+++.|++.||++... ..++|
T Consensus 254 g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~--------------~~~~~~~~~~Ll~~ld~l~~~--~~viv 317 (733)
T TIGR01243 254 GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT--------------GEVEKRVVAQLLTLMDGLKGR--GRVIV 317 (733)
T ss_pred cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc--------------chHHHHHHHHHHHHhhccccC--CCEEE
Confidence 2346788888765 4579999999999875322110 122356788999999998654 45888
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHHHHHHh
Q 011374 362 IFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 433 (487)
Q Consensus 362 I~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 433 (487)
|+|||+++.||+++.|||||+.+|+++.|+.+++.+|++.+...........+..+... .+++++++...+.
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~ 390 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAK 390 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999987754322223345556554 4699999988763
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.7e-25 Score=246.28 Aligned_cols=209 Identities=25% Similarity=0.302 Sum_probs=171.6
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-----CCcEEEeecC
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELS 282 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-----~~~v~~l~~~ 282 (487)
+.-.+|++|+|...+++.+.+.+..++..+++|..+++.+|||+|||||||||||++|+|+|..+ +..++.-...
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 33458999999999999999999999999999999999999999999999999999999999988 2333332222
Q ss_pred cc------cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccC
Q 011374 283 SV------EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSS 354 (487)
Q Consensus 283 ~~------~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~ 354 (487)
+. +.+..++-+|..+ .+|+|||+||||.+.+.+.... .+....+.+.||..|||+.+.
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq--------------Eqih~SIvSTLLaLmdGldsR 404 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ--------------EQIHASIVSTLLALMDGLDSR 404 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH--------------HHhhhhHHHHHHHhccCCCCC
Confidence 22 4578889999877 4699999999999987664333 234567899999999999876
Q ss_pred CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHH-HHHhh-cCCCHHHHHHHH
Q 011374 355 CGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVE-ELIEK-VEVTPADVAEQL 432 (487)
Q Consensus 355 ~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~-~l~~~-~~~spa~i~~~l 432 (487)
+.++||++||+++.+||||+||||||..++||+|+.+++..|+..+-..-..++..... .+.+. .++-+||+..+|
T Consensus 405 --gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLC 482 (1080)
T KOG0732|consen 405 --GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALC 482 (1080)
T ss_pred --CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHH
Confidence 45999999999999999999999999999999999999999998877666666654443 34333 468888887776
No 37
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.6e-24 Score=227.04 Aligned_cols=206 Identities=25% Similarity=0.335 Sum_probs=179.5
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~---- 284 (487)
++.+ +.++|...+-..+.+.+...+..+..|...|.++++|+|+|||||||||.+++|+|++.+..++.++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5666 78899999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred --cChHHHHHHHHHcc--C-CeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCce
Q 011374 285 --EGNKDLRQILIATE--N-KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDER 359 (487)
Q Consensus 285 --~~~~~l~~l~~~~~--~-~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ 359 (487)
++++.|++.|..+. + |+||||||||.+++.+.... .....+.++|+..|||+.. ...+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~---------------~~e~Rv~sqlltL~dg~~~--~~~v 321 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGAD---------------DVESRVVSQLLTLLDGLKP--DAKV 321 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccc---------------hHHHHHHHHHHHHHhhCcC--cCcE
Confidence 57899999998773 4 99999999999987443211 1257889999999999963 3569
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHh-hcCCCHHHHHHHHh
Q 011374 360 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE-KVEVTPADVAEQLM 433 (487)
Q Consensus 360 iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~i~~~l~ 433 (487)
|++++||+|+.|||++.| ||||..++++.|+..+|.++++.+.....+....++..+.. .+++++||+...|.
T Consensus 322 ivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ 395 (693)
T KOG0730|consen 322 IVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCR 395 (693)
T ss_pred EEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHH
Confidence 999999999999999999 99999999999999999999999988766664456666665 46799999999884
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-24 Score=223.65 Aligned_cols=208 Identities=24% Similarity=0.289 Sum_probs=179.3
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~----- 284 (487)
+..|++++|....|+.+.+.+..++.+++.|..+ .++.+|+||.||||||||+|++|+|.+.+..++.+..+++
T Consensus 149 ~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~ 227 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYV 227 (428)
T ss_pred cccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhcc
Confidence 4689999999999999999999999999888764 4567899999999999999999999999999999998887
Q ss_pred -cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEE
Q 011374 285 -EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERII 361 (487)
Q Consensus 285 -~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ii 361 (487)
+++..++.+|.-+ .+|+|+||||||.++..+.... +..+......+|..+||..+...+.++|
T Consensus 228 Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e--------------~e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 228 GESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNE--------------HESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred ChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcc--------------cccchhhhhHHHhhhccccCCCCCeEEE
Confidence 3446667777544 5799999999999997552111 4556788899999999999888888999
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCch-HHHHHHHhhc-CCCHHHHHHHHhc
Q 011374 362 IFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF-LEVEELIEKV-EVTPADVAEQLMR 434 (487)
Q Consensus 362 I~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~-~~i~~l~~~~-~~spa~i~~~l~~ 434 (487)
|+|||.|+.+|.|++| ||...+++|.|+.++|..++++++....+.+. .+++.++... ++|..||...|..
T Consensus 294 igaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~ke 366 (428)
T KOG0740|consen 294 IGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKE 366 (428)
T ss_pred EecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHH
Confidence 9999999999999999 99999999999999999999999988766664 5777777754 4999999999864
No 39
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.8e-24 Score=219.03 Aligned_cols=212 Identities=24% Similarity=0.348 Sum_probs=156.0
Q ss_pred CCCC-Cccccc--cCHHHHHHH-HHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCc-EEEeecC
Q 011374 208 DHPA-TFDTLA--MDFDMKKMI-MDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD-VYDLELS 282 (487)
Q Consensus 208 ~~p~-~fd~l~--g~~~~K~~i-~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~-v~~l~~~ 282 (487)
-+|. .|+++. |.+..-..| ......-+-.|+.-.++|+++-+|+|||||||||||.+|+.|..-|+.. --.++..
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 3443 677763 333322222 2222222234788999999999999999999999999999999999753 2334444
Q ss_pred cc------cChHHHHHHHHHcc----------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHH
Q 011374 283 SV------EGNKDLRQILIATE----------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLN 346 (487)
Q Consensus 283 ~~------~~~~~l~~l~~~~~----------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 346 (487)
++ ++++++|++|..+. .-.||++||||+++..|.... + +.......+++||.
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~--g----------~TGVhD~VVNQLLs 359 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMA--G----------STGVHDTVVNQLLS 359 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCC--C----------CCCccHHHHHHHHH
Confidence 43 57899999998763 126999999999986433221 1 13556789999999
Q ss_pred HhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC-CC-Cc--hHHHHHHHhh-c
Q 011374 347 FIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT-EH-PL--FLEVEELIEK-V 421 (487)
Q Consensus 347 ~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~-~~-~l--~~~i~~l~~~-~ 421 (487)
-|||+..- .+++||+-||+++.+|+||+|||||.++++++.|+++.|.+|++.+-..- .+ .+ ..++++++.. .
T Consensus 360 KmDGVeqL--NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTK 437 (744)
T KOG0741|consen 360 KMDGVEQL--NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTK 437 (744)
T ss_pred hcccHHhh--hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhc
Confidence 99999664 56999999999999999999999999999999999999999987655431 12 12 2356666654 4
Q ss_pred CCCHHHHHHHHh
Q 011374 422 EVTPADVAEQLM 433 (487)
Q Consensus 422 ~~spa~i~~~l~ 433 (487)
+||+|+|..++.
T Consensus 438 NfSGAEleglVk 449 (744)
T KOG0741|consen 438 NFSGAELEGLVK 449 (744)
T ss_pred CCchhHHHHHHH
Confidence 599999987764
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9.3e-21 Score=189.92 Aligned_cols=223 Identities=18% Similarity=0.198 Sum_probs=163.0
Q ss_pred eCCCChhHHHHhhhhHHHhhhhhhhhccceEEEEeecCC----CCCCCCceecccCCCCCccccccCHHHHHHHHHHHHH
Q 011374 157 FHKKHKDTVLRTYIPHILKKSKELSKKKKTLKLFTLFPY----RGDTEIWQSVNLDHPATFDTLAMDFDMKKMIMDDLER 232 (487)
Q Consensus 157 ~~~~~~~~~l~~~l~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~ 232 (487)
|.++....|..+|+..++.+...+++..+...-|..... .-.+ -.........+|+.|++.+.++++|.+.-.
T Consensus 296 YTtkeg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~--~~~~s~~gk~pl~~ViL~psLe~Rie~lA~- 372 (630)
T KOG0742|consen 296 YTTKEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQG--SRSASSRGKDPLEGVILHPSLEKRIEDLAI- 372 (630)
T ss_pred eeccccchhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhh--hHhhhhcCCCCcCCeecCHHHHHHHHHHHH-
Confidence 455667789999999999998877766543211111000 0000 001112234469999999999999855332
Q ss_pred HHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----cChHHHHHHHHHc---cCCeEEE
Q 011374 233 FLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV-----EGNKDLRQILIAT---ENKSILV 304 (487)
Q Consensus 233 fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~-----~~~~~l~~l~~~~---~~~sIl~ 304 (487)
--.+ .+....+-|++|||||||||||++|+-||...|+++-.+...++ +....+.++|.-+ .+.-+||
T Consensus 373 aTaN----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllF 448 (630)
T KOG0742|consen 373 ATAN----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLF 448 (630)
T ss_pred Hhcc----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEE
Confidence 2222 23345677899999999999999999999999999998888887 3457788888644 4467999
Q ss_pred EeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeE
Q 011374 305 VEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVH 384 (487)
Q Consensus 305 IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~ 384 (487)
|||.|.++..++.... +...+..|+.||-..-. . ...+++|.+||+|+.||.|+-. |||..
T Consensus 449 IDEADAFLceRnktym-------------SEaqRsaLNAlLfRTGd-q---SrdivLvlAtNrpgdlDsAV~D--Ride~ 509 (630)
T KOG0742|consen 449 IDEADAFLCERNKTYM-------------SEAQRSALNALLFRTGD-Q---SRDIVLVLATNRPGDLDSAVND--RIDEV 509 (630)
T ss_pred ehhhHHHHHHhchhhh-------------cHHHHHHHHHHHHHhcc-c---ccceEEEeccCCccchhHHHHh--hhhhe
Confidence 9999999886665443 33456677777754322 1 2468999999999999999999 99999
Q ss_pred EEeCCCCHHHHHHHHHHhhCc
Q 011374 385 IHMSYCTPCGFKMLASNYLGI 405 (487)
Q Consensus 385 I~~~~p~~~~~~~l~~~~l~~ 405 (487)
|+||.|..++|..|+..||..
T Consensus 510 veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 510 VEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred eecCCCChHHHHHHHHHHHHH
Confidence 999999999999999998864
No 41
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.84 E-value=1.1e-19 Score=172.51 Aligned_cols=190 Identities=20% Similarity=0.209 Sum_probs=127.3
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccCh
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGN 287 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~ 287 (487)
-.|.+|++++|+++++..+.-.+.....+. ..-.++|||||||+||||||..||++++.++..++...++..
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH
Confidence 468999999999999887654443322211 123479999999999999999999999999999988888888
Q ss_pred HHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcccc-----CCC------
Q 011374 288 KDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWS-----SCG------ 356 (487)
Q Consensus 288 ~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s-----~~~------ 356 (487)
.++..++.....+.|||||||+.+- +.....|+..|+...- .+.
T Consensus 90 ~dl~~il~~l~~~~ILFIDEIHRln-------------------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~ 144 (233)
T PF05496_consen 90 GDLAAILTNLKEGDILFIDEIHRLN-------------------------KAQQEILLPAMEDGKIDIIIGKGPNARSIR 144 (233)
T ss_dssp HHHHHHHHT--TT-EEEECTCCC---------------------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEE
T ss_pred HHHHHHHHhcCCCcEEEEechhhcc-------------------------HHHHHHHHHHhccCeEEEEeccccccceee
Confidence 9999999998899999999999772 3344557777764321 111
Q ss_pred ---CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHH-hhcCCCHHHHHHHH
Q 011374 357 ---DERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELI-EKVEVTPADVAEQL 432 (487)
Q Consensus 357 ---~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~-~~~~~spa~i~~~l 432 (487)
....+|++|++...|.+.|.. ||....++.+++.+++.+|+++.....+.++.++....+ ....-||.--.++|
T Consensus 145 ~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 145 INLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp EE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred ccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 124789999999999999999 999999999999999999999888777777766554433 33445555443333
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.83 E-value=2e-20 Score=164.14 Aligned_cols=123 Identities=33% Similarity=0.544 Sum_probs=100.4
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc------ChHHHHHHHHHc--cC-CeEEEEeccchhhhhhhHHHhh
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE------GNKDLRQILIAT--EN-KSILVVEDIDCCLEMQDRLAKA 321 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~------~~~~l~~l~~~~--~~-~sIl~IDeiD~~~~~~~~~~~~ 321 (487)
+|||||||||||++|+++|+.++.+++.+++..+. ....+..+|..+ .. ++||+|||+|.+.... +..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 68999999999999999999999999999998874 456777777765 34 8999999999997643 000
Q ss_pred hcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 011374 322 KAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSY 389 (487)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~ 389 (487)
. .......+..|++.++..... +.+++||+|||.++.+||+++| |||+.+|++|.
T Consensus 78 ~-----------~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 S-----------SSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp S-----------SHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred c-----------ccccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 0 233467889999999987653 3468999999999999999998 89999999874
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=6e-19 Score=172.76 Aligned_cols=179 Identities=21% Similarity=0.301 Sum_probs=137.4
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHh-cCCCcccceeeCCCCCcHHHHHHHHHHHcC---------CcEEEeec
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLN---------FDVYDLEL 281 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~-g~~~~rg~LL~GPPGtGKTsLa~alA~~l~---------~~v~~l~~ 281 (487)
-|++|+-+.++|++++.....-+...+.-..- =+.|.|-+|||||||||||+|++|+|+.|. ..+++++.
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 47888999999999988776655433221111 147889999999999999999999999983 34567777
Q ss_pred Ccc------cChHHHHHHHHHcc-------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHh
Q 011374 282 SSV------EGNKDLRQILIATE-------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFI 348 (487)
Q Consensus 282 ~~~------~~~~~l~~l~~~~~-------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 348 (487)
.++ ++.+.+.++|.+.. .-..++|||++.+...|........ ..+.-+.++.||.+|
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~E----------psDaIRvVNalLTQl 289 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNE----------PSDAIRVVNALLTQL 289 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCC----------CchHHHHHHHHHHHH
Confidence 665 45566677776542 2356789999999876543221111 244568899999999
Q ss_pred hccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 349 DGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 349 Dgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
|.+... .+++|.+|+|-.+.||-|+.. |-|.+.++++|+.+++.+|++..+.
T Consensus 290 DrlK~~--~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 290 DRLKRY--PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred HHhccC--CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 999765 458999999999999999999 9999999999999999999988764
No 44
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.78 E-value=8e-18 Score=171.93 Aligned_cols=190 Identities=21% Similarity=0.208 Sum_probs=142.2
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccCh
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGN 287 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~ 287 (487)
-.|.+|++++|.++.++.+...+...... ...++++|||||||||||++|+++|++++.++...+...+...
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~ 90 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKP 90 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccCh
Confidence 45889999999999999887766533221 2345689999999999999999999999999888777777777
Q ss_pred HHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc-----cC--------
Q 011374 288 KDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW-----SS-------- 354 (487)
Q Consensus 288 ~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~-----s~-------- 354 (487)
..+..++.....+.||||||||.+.... ...|.+.|+... ..
T Consensus 91 ~~l~~~l~~l~~~~vl~IDEi~~l~~~~-------------------------~e~l~~~~e~~~~~~~l~~~~~~~~~~ 145 (328)
T PRK00080 91 GDLAAILTNLEEGDVLFIDEIHRLSPVV-------------------------EEILYPAMEDFRLDIMIGKGPAARSIR 145 (328)
T ss_pred HHHHHHHHhcccCCEEEEecHhhcchHH-------------------------HHHHHHHHHhcceeeeeccCcccccee
Confidence 7888888888889999999999874211 111233333211 00
Q ss_pred -CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHH-HHHHHhhcCCCHHHHHHHH
Q 011374 355 -CGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE-VEELIEKVEVTPADVAEQL 432 (487)
Q Consensus 355 -~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~-i~~l~~~~~~spa~i~~~l 432 (487)
.-....+|++||++..++++|.+ ||+..+.|++++.+++.+++++........+.++ +..++....-+|..+...|
T Consensus 146 ~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l 223 (328)
T PRK00080 146 LDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLL 223 (328)
T ss_pred ecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHH
Confidence 00236789999999999999988 9999999999999999999998887666665444 4445555566666665555
No 45
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.77 E-value=1.9e-17 Score=163.84 Aligned_cols=179 Identities=15% Similarity=0.199 Sum_probs=125.8
Q ss_pred ccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCc---ccceeeCCCCCcHHHHHHHHHHHcC-------CcEEEeecC
Q 011374 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWK---RGYLLYGPPGTGKSSLIAAMANYLN-------FDVYDLELS 282 (487)
Q Consensus 213 fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~---rg~LL~GPPGtGKTsLa~alA~~l~-------~~v~~l~~~ 282 (487)
+++++|.+++|+.|.+.+..... .....+.|...+ .++|||||||||||++|+++|+.+. .+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQI-NEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHH-HHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 67899999999999877654433 344455666433 4589999999999999999998762 355666655
Q ss_pred ccc------ChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCC
Q 011374 283 SVE------GNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCG 356 (487)
Q Consensus 283 ~~~------~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~ 356 (487)
++. ....++.+|..+ .++||||||+|.+..... .......+..|++.|+.. .
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~L~~~~~-----------------~~~~~~~i~~Ll~~~e~~----~ 141 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLARGGE-----------------KDFGKEAIDTLVKGMEDN----R 141 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc-cCCEEEEechhhhccCCc-----------------cchHHHHHHHHHHHHhcc----C
Confidence 442 245566777665 468999999998842000 112345677788888864 2
Q ss_pred CceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHH
Q 011374 357 DERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEE 416 (487)
Q Consensus 357 ~~~iiI~TTN~~~-----~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ 416 (487)
...++|++++..+ .++|+|.+ ||+.+|+||.++.+++..+++.++......+.++...
T Consensus 142 ~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~ 204 (261)
T TIGR02881 142 NEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKW 204 (261)
T ss_pred CCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHH
Confidence 3355566554322 37899999 9999999999999999999999987655555554433
No 46
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.76 E-value=5.2e-17 Score=156.16 Aligned_cols=180 Identities=19% Similarity=0.272 Sum_probs=150.5
Q ss_pred CCCceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCc
Q 011374 199 TEIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFD 275 (487)
Q Consensus 199 ~~~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~ 275 (487)
++.+.+|....|..+++|+|.+.+|+.|++....|+... +..++||||++||||||+|+|+.+++ |+.
T Consensus 12 ~~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~---------pannvLL~G~rGtGKSSlVkall~~y~~~GLR 82 (249)
T PF05673_consen 12 SGYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQGL---------PANNVLLWGARGTGKSSLVKALLNEYADQGLR 82 (249)
T ss_pred CCcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCC---------CCcceEEecCCCCCHHHHHHHHHHHHhhcCce
Confidence 445788888888899999999999999999999998752 46789999999999999999999977 788
Q ss_pred EEEeecCcccChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCC
Q 011374 276 VYDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSC 355 (487)
Q Consensus 276 v~~l~~~~~~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~ 355 (487)
++.++-..+..-..+...+...+.+-|||+||+. + .........|...|||-....
T Consensus 83 lIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLs--F----------------------e~~d~~yk~LKs~LeGgle~~ 138 (249)
T PF05673_consen 83 LIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLS--F----------------------EEGDTEYKALKSVLEGGLEAR 138 (249)
T ss_pred EEEECHHHhccHHHHHHHHhcCCCCEEEEecCCC--C----------------------CCCcHHHHHHHHHhcCccccC
Confidence 8999888888888888888888899999999975 2 334556788999999988888
Q ss_pred CCceEEEEecCCCCCCCcccc----------C-----------CCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCch
Q 011374 356 GDERIIIFTTNHKDRLDPALL----------R-----------PGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF 411 (487)
Q Consensus 356 ~~~~iiI~TTN~~~~LD~ALl----------R-----------pGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 411 (487)
+++++|.+|+|+...+..... . ..||...|.|..|+.++..+|+++++...+.++.
T Consensus 139 P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~ 215 (249)
T PF05673_consen 139 PDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELD 215 (249)
T ss_pred CCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 899999999998644432211 1 1399999999999999999999999976666654
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.75 E-value=3.4e-17 Score=165.34 Aligned_cols=186 Identities=19% Similarity=0.206 Sum_probs=134.3
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHH
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLR 291 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~ 291 (487)
+|++++|.+++++.|...+...... ...+.+++||||||||||+|++++|++++.++..+..........+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 6899999999999887766533322 12345799999999999999999999999998877766666667777
Q ss_pred HHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc--------------cCCCC
Q 011374 292 QILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW--------------SSCGD 357 (487)
Q Consensus 292 ~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~--------------s~~~~ 357 (487)
..+.....+.||||||||.+... ....|++.++... .....
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~~-------------------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~ 128 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSPA-------------------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLP 128 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCHH-------------------------HHHHhhHHHhhhheeeeeccCccccceeecCC
Confidence 88877788899999999987431 1112333332111 00112
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHH-HHHHHhhcCCCHHHHHHHH
Q 011374 358 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE-VEELIEKVEVTPADVAEQL 432 (487)
Q Consensus 358 ~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~-i~~l~~~~~~spa~i~~~l 432 (487)
..++|++||++..+++++.+ ||...++++.++.++..++++.........+.++ +..++....-+|..+...+
T Consensus 129 ~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll 202 (305)
T TIGR00635 129 PFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLL 202 (305)
T ss_pred CeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHH
Confidence 37889999999999999999 9999999999999999999988776554444443 3344444445555554433
No 48
>CHL00181 cbbX CbbX; Provisional
Probab=99.74 E-value=5e-17 Score=162.78 Aligned_cols=176 Identities=19% Similarity=0.259 Sum_probs=127.3
Q ss_pred cccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCc-cc--ceeeCCCCCcHHHHHHHHHHHcC-------CcEEEeecCc
Q 011374 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWK-RG--YLLYGPPGTGKSSLIAAMANYLN-------FDVYDLELSS 283 (487)
Q Consensus 214 d~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~-rg--~LL~GPPGtGKTsLa~alA~~l~-------~~v~~l~~~~ 283 (487)
++++|.+++|++|.+.+. ++.....+.+.|...+ .| +||+||||||||++|+++|+.+. .+++.++.+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~-~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAA-LLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 479999999999988664 4555677778887654 24 79999999999999999999862 2467776554
Q ss_pred c------cChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCC
Q 011374 284 V------EGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGD 357 (487)
Q Consensus 284 ~------~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~ 357 (487)
+ ++......++..+ .++||||||+|.+...+.. +..+...+..|+..|+... .
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~~~~~----------------~~~~~e~~~~L~~~me~~~----~ 160 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYKPDNE----------------RDYGSEAIEILLQVMENQR----D 160 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhccCCCc----------------cchHHHHHHHHHHHHhcCC----C
Confidence 3 1233455566654 4589999999987531100 1234567788889898532 3
Q ss_pred ceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHH
Q 011374 358 ERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE 413 (487)
Q Consensus 358 ~~iiI~TTN~~~-----~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~ 413 (487)
+++||++++... .++|+|.+ ||+.+|+|+.++.+++.+|+..++......+.++
T Consensus 161 ~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~ 219 (287)
T CHL00181 161 DLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE 219 (287)
T ss_pred CEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh
Confidence 466777765321 34699999 9999999999999999999999997665555443
No 49
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.74 E-value=1.9e-17 Score=165.68 Aligned_cols=177 Identities=18% Similarity=0.234 Sum_probs=129.4
Q ss_pred cc-ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCC---cccceeeCCCCCcHHHHHHHHHHHcC-------CcEEEeec
Q 011374 213 FD-TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAW---KRGYLLYGPPGTGKSSLIAAMANYLN-------FDVYDLEL 281 (487)
Q Consensus 213 fd-~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~---~rg~LL~GPPGtGKTsLa~alA~~l~-------~~v~~l~~ 281 (487)
++ .++|.+++|+.|.+.+.. +..+..+.+.|... +.++||+||||||||++|+++|..+. -+++.++.
T Consensus 20 l~~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 20 LDRELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred HHHhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 44 699999999999776654 66777888888764 45899999999999999999998873 25777765
Q ss_pred Ccc------cChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCC
Q 011374 282 SSV------EGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSC 355 (487)
Q Consensus 282 ~~~------~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~ 355 (487)
..+ .+...++.+|.++ .++||||||||.+...++. ..........|++.|+..
T Consensus 99 ~~l~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~~~~~----------------~~~~~~~~~~Ll~~le~~---- 157 (284)
T TIGR02880 99 DDLVGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYRPDNE----------------RDYGQEAIEILLQVMENQ---- 157 (284)
T ss_pred HHHhHhhcccchHHHHHHHHHc-cCcEEEEechhhhccCCCc----------------cchHHHHHHHHHHHHhcC----
Confidence 443 1234556666665 4589999999987421100 122355677889999853
Q ss_pred CCceEEEEecCCC--C---CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHH
Q 011374 356 GDERIIIFTTNHK--D---RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE 413 (487)
Q Consensus 356 ~~~~iiI~TTN~~--~---~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~ 413 (487)
..+++||++++.. + .++|+|.+ ||+.+|+||.++.+++..|+++++......+.++
T Consensus 158 ~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~ 218 (284)
T TIGR02880 158 RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAE 218 (284)
T ss_pred CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHH
Confidence 2456777776542 2 35899999 9999999999999999999999997654444333
No 50
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.71 E-value=2e-16 Score=153.17 Aligned_cols=189 Identities=20% Similarity=0.203 Sum_probs=144.1
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccCh
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGN 287 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~ 287 (487)
-.|.+|++.+|++++|+.+.=.+..-..+. ..--++|||||||.||||||..||+++|.++-..+...++..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~ 91 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP 91 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh
Confidence 368999999999999988766555333322 234579999999999999999999999999999998899999
Q ss_pred HHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc--------cCC----
Q 011374 288 KDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW--------SSC---- 355 (487)
Q Consensus 288 ~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~--------s~~---- 355 (487)
.+|..++.......|||||||+.+.. .+-.-|...|+.+. ...
T Consensus 92 gDlaaiLt~Le~~DVLFIDEIHrl~~-------------------------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ 146 (332)
T COG2255 92 GDLAAILTNLEEGDVLFIDEIHRLSP-------------------------AVEEVLYPAMEDFRLDIIIGKGPAARSIR 146 (332)
T ss_pred hhHHHHHhcCCcCCeEEEehhhhcCh-------------------------hHHHHhhhhhhheeEEEEEccCCccceEe
Confidence 99999999999999999999998732 12222344444221 000
Q ss_pred --CCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHH-HHHHHhhcCCCHHHHHHH
Q 011374 356 --GDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE-VEELIEKVEVTPADVAEQ 431 (487)
Q Consensus 356 --~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~-i~~l~~~~~~spa~i~~~ 431 (487)
-...-+|++|.+...|...|.. ||.+..++.+++.+++..|+.+....-+..+.++ ..++.....-||.--..+
T Consensus 147 ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 147 LDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred ccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHH
Confidence 0134789999999999999998 9999999999999999999999887666666544 334444555666543333
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=3.2e-16 Score=176.79 Aligned_cols=162 Identities=27% Similarity=0.227 Sum_probs=118.5
Q ss_pred Cccc-cccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccCh---
Q 011374 212 TFDT-LAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGN--- 287 (487)
Q Consensus 212 ~fd~-l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~--- 287 (487)
.|+. ++|.+++|+.|.+.+..... .+...+.++||+||||||||++|+++|+.++.+++.++++.+.+.
T Consensus 317 ~l~~~~~G~~~~k~~i~~~~~~~~~-------~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i 389 (775)
T TIGR00763 317 ILDEDHYGLKKVKERILEYLAVQKL-------RGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEI 389 (775)
T ss_pred HhhhhcCChHHHHHHHHHHHHHHHh-------hcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHH
Confidence 3443 78999999999887654322 122334479999999999999999999999999999987655322
Q ss_pred ------------HHHHHHHHHc-cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc---
Q 011374 288 ------------KDLRQILIAT-ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL--- 351 (487)
Q Consensus 288 ------------~~l~~l~~~~-~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl--- 351 (487)
..+.+.|..+ ..+.||||||||.+... .+....+.||..||..
T Consensus 390 ~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~---------------------~~~~~~~aLl~~ld~~~~~ 448 (775)
T TIGR00763 390 RGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSS---------------------FRGDPASALLEVLDPEQNN 448 (775)
T ss_pred cCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCc---------------------cCCCHHHHHHHhcCHHhcC
Confidence 3445555544 34569999999988521 1112345677777631
Q ss_pred --ccC------CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 352 --WSS------CGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 352 --~s~------~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
... .-.++++|+|||.++.++++|++ ||+ .|+|+.++.+++..|+++|+.
T Consensus 449 ~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 449 AFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred ccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHH
Confidence 000 01357889999999999999999 996 689999999999999999883
No 52
>PRK04195 replication factor C large subunit; Provisional
Probab=99.70 E-value=4.2e-16 Score=167.18 Aligned_cols=166 Identities=22% Similarity=0.296 Sum_probs=127.8
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccC
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG 286 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~ 286 (487)
...|.+|++|+|.+++++.+...+..+.+ |. +++++|||||||||||++|+++|++++++++.++.++...
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~-~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWLK--------GK-PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CC-CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 57899999999999999999888876653 22 2678999999999999999999999999999999988776
Q ss_pred hHHHHHHHHHc--------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCc
Q 011374 287 NKDLRQILIAT--------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDE 358 (487)
Q Consensus 287 ~~~l~~l~~~~--------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~ 358 (487)
...+..+.... ..+.||+|||+|.+.. ......+..|++.++.. .
T Consensus 78 ~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~---------------------~~d~~~~~aL~~~l~~~------~ 130 (482)
T PRK04195 78 ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG---------------------NEDRGGARAILELIKKA------K 130 (482)
T ss_pred HHHHHHHHHHhhccCcccCCCCeEEEEecCccccc---------------------ccchhHHHHHHHHHHcC------C
Confidence 66666665433 1468999999998743 11123456677777631 2
Q ss_pred eEEEEecCCCCCCCc-cccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCch
Q 011374 359 RIIIFTTNHKDRLDP-ALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF 411 (487)
Q Consensus 359 ~iiI~TTN~~~~LD~-ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 411 (487)
..+|+++|.+..+++ .|.+ | ...|+|+.|+..++..+++..+..++..+.
T Consensus 131 ~~iIli~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~ 181 (482)
T PRK04195 131 QPIILTANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECD 181 (482)
T ss_pred CCEEEeccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 457788999988887 5544 4 467999999999999999888865554443
No 53
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=4.5e-16 Score=163.69 Aligned_cols=162 Identities=15% Similarity=0.279 Sum_probs=121.7
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
...|.+|++++|++.+.+.|...+. . | ..+..|||+||||||||++|+++|+.+++
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~----~-------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALK----S-------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 4579999999999988887665553 1 1 23456999999999999999999999976
Q ss_pred ------------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCC
Q 011374 275 ------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (487)
Q Consensus 275 ------------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (487)
+++.++...-.+.+.++++.... ....|+||||+|.+-
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------------------ 134 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------------------ 134 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------------------
Confidence 35556654433455666655433 235699999999772
Q ss_pred chhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchH
Q 011374 337 NRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFL 412 (487)
Q Consensus 337 ~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~ 412 (487)
...++.||..|+. ....+++|++||.++.|.+++++ |+ .++.|..++.++....++..+..++....+
T Consensus 135 -~~A~NALLKtLEE----Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~ 202 (484)
T PRK14956 135 -DQSFNALLKTLEE----PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQ 202 (484)
T ss_pred -HHHHHHHHHHhhc----CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 3456778888875 23568889999999999999998 87 469999999999888888877655544433
No 54
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=8e-16 Score=167.55 Aligned_cols=162 Identities=16% Similarity=0.284 Sum_probs=125.9
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 274 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------- 274 (487)
.+|.+|++|+|++.+++.|...+. +...+..||||||+|||||++++++|+.+++
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~------------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALD------------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHh------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 479999999999998887766553 1233567999999999999999999999865
Q ss_pred -----------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCc
Q 011374 275 -----------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (487)
Q Consensus 275 -----------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (487)
+++.++..+-.+.+.+++++... ....|+||||+|.+.
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------------------- 132 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------------------- 132 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-------------------------
Confidence 46666665444556777777653 235799999999873
Q ss_pred hhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHH
Q 011374 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE 413 (487)
Q Consensus 338 ~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~ 413 (487)
....+.||..|+.- ....+||++||++++|.+.|++ |+ .++.|..++.++....++..+..++..+.++
T Consensus 133 ~~A~NALLKtLEEP----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~e 201 (830)
T PRK07003 133 NHAFNAMLKTLEEP----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQ 201 (830)
T ss_pred HHHHHHHHHHHHhc----CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHH
Confidence 23467788888864 3468899999999999999998 87 6799999999999999988887665554433
No 55
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=7e-16 Score=164.06 Aligned_cols=157 Identities=20% Similarity=0.366 Sum_probs=117.8
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
..+|.+|++++|++.+++.+...+. . ...+.++|||||||||||++|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~----~--------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALK----K--------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 3579999999999888776655433 2 124567999999999999999999999875
Q ss_pred ------------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCC
Q 011374 275 ------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (487)
Q Consensus 275 ------------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (487)
+++.++.+.-.+-+.++++.... ....|++|||+|.+.
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------------------ 130 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------------------ 130 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------------------
Confidence 57777776544556677665443 235799999999873
Q ss_pred chhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC
Q 011374 337 NRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITE 407 (487)
Q Consensus 337 ~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~ 407 (487)
...+..||..++.. +...++|++||.+..+++++.+ |+. .++|..++.++...+++..+...+
T Consensus 131 -~~a~~~LLk~LE~p----~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~eg 193 (472)
T PRK14962 131 -KEAFNALLKTLEEP----PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEG 193 (472)
T ss_pred -HHHHHHHHHHHHhC----CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcC
Confidence 22356688888753 3457777788888899999998 774 699999999998888887665433
No 56
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.69 E-value=5.7e-16 Score=156.50 Aligned_cols=151 Identities=26% Similarity=0.358 Sum_probs=111.4
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChH
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNK 288 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~ 288 (487)
.|.+||+++|++.+--.- .-|.+.+ ....-.+.+|||||||||||||+.||+.++.+|..++... .+.+
T Consensus 19 RP~~lde~vGQ~HLlg~~-~~lrr~v---------~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gvk 87 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEG-KPLRRAV---------EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGVK 87 (436)
T ss_pred CCCCHHHhcChHhhhCCC-chHHHHH---------hcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccHH
Confidence 589999999987653210 1111111 1222357899999999999999999999999999988654 3578
Q ss_pred HHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEE
Q 011374 289 DLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIII 362 (487)
Q Consensus 289 ~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI 362 (487)
+++.++..+ .++.|||||||+.+- +.-...||-.++. +.+++|
T Consensus 88 dlr~i~e~a~~~~~~gr~tiLflDEIHRfn-------------------------K~QQD~lLp~vE~------G~iilI 136 (436)
T COG2256 88 DLREIIEEARKNRLLGRRTILFLDEIHRFN-------------------------KAQQDALLPHVEN------GTIILI 136 (436)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEehhhhcC-------------------------hhhhhhhhhhhcC------CeEEEE
Confidence 899988766 247999999999772 3334557777763 346677
Q ss_pred Ee-c-CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 363 FT-T-NHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 363 ~T-T-N~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
++ | |.--.|.+||++ |. ...++...+.++.++++++-+.
T Consensus 137 GATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 137 GATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred eccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHh
Confidence 64 4 445689999998 65 5688999999999999988544
No 57
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=3.9e-16 Score=168.04 Aligned_cols=179 Identities=17% Similarity=0.282 Sum_probs=132.2
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
..+|.+|++|+|++.+++.|.+.+. . ...+..|||+||+|||||++++++|+.+++
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~----~--------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALE----Q--------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHH----h--------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 3579999999999999987776554 1 123567999999999999999999999976
Q ss_pred -----------------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhh
Q 011374 275 -----------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRS 331 (487)
Q Consensus 275 -----------------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~ 331 (487)
+++.++..+-.+.+.+++++... .+..|+||||+|.+-
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------------- 137 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------------- 137 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-------------------
Confidence 56666665544566777777653 235799999999772
Q ss_pred cccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCch
Q 011374 332 ACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF 411 (487)
Q Consensus 332 ~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 411 (487)
....+.||..|+.- ....++|++||.+++|.+.+++ |+ .++.|..++.++....++..+..++....
T Consensus 138 ------~~AaNALLKTLEEP----P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d 204 (700)
T PRK12323 138 ------NHAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHE 204 (700)
T ss_pred ------HHHHHHHHHhhccC----CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCC
Confidence 34567788888853 4568899999999999999998 87 67999999999999888887765544443
Q ss_pred HH-HHHHHhhcCCCHHHHH
Q 011374 412 LE-VEELIEKVEVTPADVA 429 (487)
Q Consensus 412 ~~-i~~l~~~~~~spa~i~ 429 (487)
++ +..++...+-++.+..
T Consensus 205 ~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 205 VNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred HHHHHHHHHHcCCCHHHHH
Confidence 33 2333333334444433
No 58
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.2e-15 Score=163.15 Aligned_cols=159 Identities=24% Similarity=0.201 Sum_probs=119.6
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHH---
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLR--- 291 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~--- 291 (487)
+-.|.+++|++|++.|.--... +.--+.-++|+||||+|||||+++||..++..++.+.++.+.++++++
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 3468889999999988633222 222234578999999999999999999999999999999998877764
Q ss_pred ------------HHHHHc-cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccC----
Q 011374 292 ------------QILIAT-ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSS---- 354 (487)
Q Consensus 292 ------------~l~~~~-~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~---- 354 (487)
+-+.++ ....+++|||||.+.. .....-.|.||..+|--...
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~s---------------------s~rGDPaSALLEVLDPEQN~~F~D 455 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGS---------------------SFRGDPASALLEVLDPEQNNTFSD 455 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCCeEEeechhhccC---------------------CCCCChHHHHHhhcCHhhcCchhh
Confidence 222222 3467999999999843 12223345666666521100
Q ss_pred -------CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 355 -------CGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 355 -------~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
--.++++|+|.|..+.++.+|+. ||. .|+++-++.++-.+|+++||-
T Consensus 456 hYLev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 456 HYLEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred ccccCccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcc
Confidence 01358999999999999999999 996 599999999999999999994
No 59
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.67 E-value=3.6e-16 Score=175.45 Aligned_cols=197 Identities=18% Similarity=0.183 Sum_probs=136.4
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----------CCcEEE
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 278 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----------~~~v~~ 278 (487)
.|..+|.++|.++..+.+++.|. ...+.++||+||||||||++|+++|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~-------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC-------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 47789999999888887765553 2235689999999999999999999988 788999
Q ss_pred eecCccc--------ChHHHHHHHHHcc--CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHh
Q 011374 279 LELSSVE--------GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFI 348 (487)
Q Consensus 279 l~~~~~~--------~~~~l~~l~~~~~--~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 348 (487)
++++.+. .+..+++++..+. .++||||||||.+++.... ........+-|+..+
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~----------------~~~~~~~~~~L~~~l 307 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT----------------SGGSMDASNLLKPAL 307 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC----------------CCccHHHHHHHHHHH
Confidence 9877653 2367888887653 4899999999999753211 011111223344444
Q ss_pred hccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC--CCCchHHHHHHHhhc
Q 011374 349 DGLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT--EHPLFLEVEELIEKV 421 (487)
Q Consensus 349 Dgl~s~~~~~~iiI~TTN~~~-----~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~--~~~l~~~i~~l~~~~ 421 (487)
. .+++.+|++||..+ .+|+||.| ||. .|+++.|+.+++..|++...... .|. .
T Consensus 308 ~------~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~-----------v 367 (731)
T TIGR02639 308 S------SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHH-----------V 367 (731)
T ss_pred h------CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccC-----------c
Confidence 3 24578888888643 57999999 997 69999999999999998755431 111 1
Q ss_pred CCCHHHHHHHHh-------ccCCHHHHHHHHHHHHHHHHh
Q 011374 422 EVTPADVAEQLM-------RDEVPKIALSGLIQFLQIKKR 454 (487)
Q Consensus 422 ~~spa~i~~~l~-------~~~~~~~al~~l~~~l~~~~~ 454 (487)
.+++..+...+. ...-|+.|++.+.++....+.
T Consensus 368 ~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~ 407 (731)
T TIGR02639 368 KYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRL 407 (731)
T ss_pred ccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhc
Confidence 222222222221 123489999888887765554
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.2e-15 Score=164.79 Aligned_cols=159 Identities=16% Similarity=0.287 Sum_probs=123.8
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 274 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------- 274 (487)
.+|.+|++|+|++.+++.|...+. ....+..|||+||||||||++|+++|+.+++
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~------------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALE------------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 468999999999999888876654 1233568999999999999999999999975
Q ss_pred -----------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCc
Q 011374 275 -----------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (487)
Q Consensus 275 -----------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (487)
+++.++.++-.+...+++++... .+..|++|||+|.+-
T Consensus 77 sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------------------- 131 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------------------- 131 (702)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-------------------------
Confidence 56777776555567788777654 245799999999772
Q ss_pred hhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 338 ~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
....+.||..|+.. +....+|++|+.+.++.+.+++ |+ .+++|..++.++....++..+..++...
T Consensus 132 ~~A~NALLKtLEEP----P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~i 197 (702)
T PRK14960 132 THSFNALLKTLEEP----PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAA 197 (702)
T ss_pred HHHHHHHHHHHhcC----CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCC
Confidence 23466788888853 3457788888889999989887 77 5799999999999888888776654444
No 61
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=3.5e-15 Score=154.49 Aligned_cols=159 Identities=16% Similarity=0.253 Sum_probs=116.9
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 274 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------- 274 (487)
..|.+|++++|++.+++.+...+. ....+..|||+||||||||++|+++|+.+++
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~------------~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLS------------LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHH------------cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 468999999999998887765443 1124567999999999999999999999863
Q ss_pred -----------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCc
Q 011374 275 -----------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (487)
Q Consensus 275 -----------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (487)
+++.++.++-.....+++++... ....|++|||+|.+.
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------------------- 132 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------------------- 132 (363)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-------------------------
Confidence 34555544323445666666543 234699999999772
Q ss_pred hhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 338 ~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
....+.||..++.. +....+|++|+.++.+.+++.. |+ ..++|++++.++....++..+...+...
T Consensus 133 ~~a~naLLk~lEe~----~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i 198 (363)
T PRK14961 133 RHSFNALLKTLEEP----PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDT 198 (363)
T ss_pred HHHHHHHHHHHhcC----CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 23445688888753 3456778888888999999987 76 5799999999999988887665544433
No 62
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5.4e-15 Score=157.52 Aligned_cols=201 Identities=21% Similarity=0.253 Sum_probs=134.2
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHH----
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDL---- 290 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l---- 290 (487)
+-.|..++|++|++.|.- -+-.|-.-++.++|+||||+||||++++||..||..|+.++.+.+.+.+++
T Consensus 412 DHYgm~dVKeRILEfiAV-------~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAV-------GKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccchHHHHHHHHHHHHH-------HhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 456888999999998752 222244445668899999999999999999999999999999888655554
Q ss_pred -----------HHHHHHc-cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhh---------
Q 011374 291 -----------RQILIAT-ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFID--------- 349 (487)
Q Consensus 291 -----------~~l~~~~-~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD--------- 349 (487)
.+-+... ....+++|||||.+.. .....--+.||..||
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~---------------------g~qGDPasALLElLDPEQNanFlD 543 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS---------------------GHQGDPASALLELLDPEQNANFLD 543 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCceEEeehhhhhCC---------------------CCCCChHHHHHHhcChhhccchhh
Confidence 3344433 3467999999999852 111112234444433
Q ss_pred ccccCC--CCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC---CCCchHHHHHHHhhcCCC
Q 011374 350 GLWSSC--GDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT---EHPLFLEVEELIEKVEVT 424 (487)
Q Consensus 350 gl~s~~--~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~---~~~l~~~i~~l~~~~~~s 424 (487)
.+-.-+ -..+++|+|.|..+.|+++|+. ||.+ |+++-+..++-..|+++||-.. ++-+.++ .+.++
T Consensus 544 HYLdVp~DLSkVLFicTAN~idtIP~pLlD--RMEv-IelsGYv~eEKv~IA~~yLip~a~~~~gl~~e------~v~is 614 (906)
T KOG2004|consen 544 HYLDVPVDLSKVLFICTANVIDTIPPPLLD--RMEV-IELSGYVAEEKVKIAERYLIPQALKDCGLKPE------QVKIS 614 (906)
T ss_pred hccccccchhheEEEEeccccccCChhhhh--hhhe-eeccCccHHHHHHHHHHhhhhHHHHHcCCCHH------hcCcc
Confidence 211100 0348999999999999999999 9975 9999999999999999999532 2222111 12233
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 011374 425 PADVAEQLMRDEVPKIALSGLIQFLQIKK 453 (487)
Q Consensus 425 pa~i~~~l~~~~~~~~al~~l~~~l~~~~ 453 (487)
-+.+ ..|+++...++.+++|.+.++..-
T Consensus 615 ~~al-~~lI~~YcrEaGVRnLqk~iekI~ 642 (906)
T KOG2004|consen 615 DDAL-LALIERYCREAGVRNLQKQIEKIC 642 (906)
T ss_pred HHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3322 223344445666666666665543
No 63
>PLN03025 replication factor C subunit; Provisional
Probab=99.64 E-value=3.8e-15 Score=151.70 Aligned_cols=162 Identities=18% Similarity=0.231 Sum_probs=115.6
Q ss_pred ceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC-----CcE
Q 011374 202 WQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FDV 276 (487)
Q Consensus 202 w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~-----~~v 276 (487)
|.. ...|.+|++++|++++.+.|...+. . +. ..++|||||||||||++|.++|+++. ..+
T Consensus 3 w~~--kyrP~~l~~~~g~~~~~~~L~~~~~----~-------~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 67 (319)
T PLN03025 3 WVE--KYRPTKLDDIVGNEDAVSRLQVIAR----D-------GN--MPNLILSGPPGTGKTTSILALAHELLGPNYKEAV 67 (319)
T ss_pred hhh--hcCCCCHHHhcCcHHHHHHHHHHHh----c-------CC--CceEEEECCCCCCHHHHHHHHHHHHhcccCccce
Confidence 543 5689999999999988776654322 1 11 13599999999999999999999983 346
Q ss_pred EEeecCcccChHHHHHHHHH---c------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHH
Q 011374 277 YDLELSSVEGNKDLRQILIA---T------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNF 347 (487)
Q Consensus 277 ~~l~~~~~~~~~~l~~l~~~---~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 347 (487)
+.++.++..+...++..+.. . ....|++|||+|.+.. .....|+..
T Consensus 68 ~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-------------------------~aq~aL~~~ 122 (319)
T PLN03025 68 LELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-------------------------GAQQALRRT 122 (319)
T ss_pred eeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-------------------------HHHHHHHHH
Confidence 66776665555555555432 1 2357999999998742 223556777
Q ss_pred hhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 348 IDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 348 lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
|+... ....+|++||.+..+.++|.+ |. ..++|+.++.++....++..+..++..+
T Consensus 123 lE~~~----~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i 178 (319)
T PLN03025 123 MEIYS----NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPY 178 (319)
T ss_pred Hhccc----CCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 76432 235578899999999999998 76 4699999999999888887776554443
No 64
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.64 E-value=9.5e-15 Score=148.24 Aligned_cols=158 Identities=18% Similarity=0.206 Sum_probs=116.0
Q ss_pred CCceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
..|.. ...|.+|++++|.+++++.+...+. . | ..+..+|||||||+|||++++++|++++.+++.+
T Consensus 9 ~~w~~--kyrP~~~~~~~~~~~~~~~l~~~~~----~-------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i 74 (316)
T PHA02544 9 FMWEQ--KYRPSTIDECILPAADKETFKSIVK----K-------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFV 74 (316)
T ss_pred Cccee--ccCCCcHHHhcCcHHHHHHHHHHHh----c-------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEe
Confidence 35765 5789999999999999888776554 1 2 2345677799999999999999999999999999
Q ss_pred ecCcccChHHHHHHH----HHc---cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc
Q 011374 280 ELSSVEGNKDLRQIL----IAT---ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW 352 (487)
Q Consensus 280 ~~~~~~~~~~l~~l~----~~~---~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~ 352 (487)
+++. .....++..+ ... ..+.||+|||+|.+.. ......|...++...
T Consensus 75 ~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~------------------------~~~~~~L~~~le~~~ 129 (316)
T PHA02544 75 NGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL------------------------ADAQRHLRSFMEAYS 129 (316)
T ss_pred ccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccC------------------------HHHHHHHHHHHHhcC
Confidence 9887 3233333322 212 3578999999997621 112234555566532
Q ss_pred cCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011374 353 SSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYL 403 (487)
Q Consensus 353 s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l 403 (487)
....+|+|||.+..+++++.+ |+. .+.|+.|+.+++..+++.++
T Consensus 130 ----~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 130 ----KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred ----CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 346788999999999999998 885 68999999999887766543
No 65
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.64 E-value=1.9e-15 Score=171.24 Aligned_cols=202 Identities=17% Similarity=0.198 Sum_probs=133.4
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----------CCcEEE
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 278 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----------~~~v~~ 278 (487)
.|..+|.++|.++..+++++.+. ...+.+++|+||||||||++|+++|..+ +..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~-------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILL-------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHh-------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 47789999999988776666553 2335689999999999999999999987 356788
Q ss_pred eecCccc--------ChHHHHHHHHHc---cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHH
Q 011374 279 LELSSVE--------GNKDLRQILIAT---ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNF 347 (487)
Q Consensus 279 l~~~~~~--------~~~~l~~l~~~~---~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 347 (487)
++++.+. ....++.++... ..++||||||||.+.+.+... .....-+-|+..
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~-----------------~~~d~~n~Lkp~ 311 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA-----------------GQGDAANLLKPA 311 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc-----------------ccccHHHHhhHH
Confidence 8877653 125788888765 357999999999997532110 011111223333
Q ss_pred hhccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC--CCC--chHH-HHHH
Q 011374 348 IDGLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT--EHP--LFLE-VEEL 417 (487)
Q Consensus 348 lDgl~s~~~~~~iiI~TTN~~~-----~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~--~~~--l~~~-i~~l 417 (487)
+. .++..+|+||+..+ .+||||.| ||. .|.++.|+.++...|++.+.... .|. ..++ +..+
T Consensus 312 l~------~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~ 382 (852)
T TIGR03345 312 LA------RGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAA 382 (852)
T ss_pred hh------CCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHH
Confidence 32 24678888888643 48999999 996 79999999999999975544321 122 2222 2222
Q ss_pred HhhcCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhc
Q 011374 418 IEKVEVTPADVAEQLMRDEVPKIALSGLIQFLQIKKRET 456 (487)
Q Consensus 418 ~~~~~~spa~i~~~l~~~~~~~~al~~l~~~l~~~~~~~ 456 (487)
+. ++...| -...-|+.|++.+.++....+...
T Consensus 383 ~~---ls~ryi----~~r~LPDKAIdlldea~a~~~~~~ 414 (852)
T TIGR03345 383 VE---LSHRYI----PGRQLPDKAVSLLDTACARVALSQ 414 (852)
T ss_pred HH---Hccccc----ccccCccHHHHHHHHHHHHHHHhc
Confidence 11 111111 112358899988888877766543
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=7.3e-15 Score=157.02 Aligned_cols=159 Identities=18% Similarity=0.288 Sum_probs=120.8
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
...|.+|++++|++.+.+.+...+. ....+.+|||+||||||||++|+++|+.+++
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~------------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTIL------------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 4579999999999988887655443 1233568999999999999999999999865
Q ss_pred ----------------cEEEeecCcccChHHHHHHHHHcc------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhc
Q 011374 275 ----------------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSA 332 (487)
Q Consensus 275 ----------------~v~~l~~~~~~~~~~l~~l~~~~~------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~ 332 (487)
+++.++..+-.+...++.++..+. ...|++|||+|.+.
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-------------------- 141 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-------------------- 141 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------------
Confidence 345555544445677888776552 45799999999772
Q ss_pred ccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCC
Q 011374 333 CNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHP 409 (487)
Q Consensus 333 ~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~ 409 (487)
...++.||..|+.. +...++|++|+.++++.+++.+ |+ ..++|..++.++...+++..+..++..
T Consensus 142 -----~~a~naLLk~LEep----p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ 206 (507)
T PRK06645 142 -----KGAFNALLKTLEEP----PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLK 206 (507)
T ss_pred -----HHHHHHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 23466788888742 3457888888899999999988 76 579999999999998888877655433
No 67
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=4.2e-15 Score=159.60 Aligned_cols=159 Identities=17% Similarity=0.316 Sum_probs=121.9
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
...|.+|++|+|++.+++.|...+.. ...+..|||+||||||||++|+++|+.+++
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 34799999999999998887766641 123557999999999999999999999965
Q ss_pred ------------cEEEeecCcccChHHHHHHHHHcc------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCC
Q 011374 275 ------------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (487)
Q Consensus 275 ------------~v~~l~~~~~~~~~~l~~l~~~~~------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (487)
+++.++.++-.+-+.+++++.... +..|++|||+|.+-
T Consensus 77 ~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------------------ 132 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------------------ 132 (509)
T ss_pred HHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------------------
Confidence 267777665556677888776542 34699999999773
Q ss_pred chhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCC
Q 011374 337 NRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHP 409 (487)
Q Consensus 337 ~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~ 409 (487)
....+.||..|+.. +...++|++|+.+.++.+.+++ |+ ..++|..++.++....++..+..++..
T Consensus 133 -~~a~naLLk~LEep----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 133 -GHSFNALLKTLEEP----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred -HHHHHHHHHHHhcc----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 23467788888864 3457788888889999988888 76 568999999998887777766554433
No 68
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=6.3e-15 Score=156.48 Aligned_cols=159 Identities=14% Similarity=0.222 Sum_probs=123.7
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC--------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-------------- 273 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~-------------- 273 (487)
..|.+|++|+|++.+++.+...+. ....+.+|||+|||||||||+|+.+|..++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~------------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFT------------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 468999999999988876654432 123467899999999999999999998763
Q ss_pred ----------CcEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCc
Q 011374 274 ----------FDVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (487)
Q Consensus 274 ----------~~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (487)
.+++.++.++-.+.++++.++... ...-|++|||+|.+-
T Consensus 75 ~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------------------- 129 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------------------- 129 (491)
T ss_pred HHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-------------------------
Confidence 467888887666677888887654 245799999999762
Q ss_pred hhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 338 ~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
...++.||..|+.- +...++|++|+.++++.+.+++ |+ ..++|..++.++....+...+..++...
T Consensus 130 ~~A~NaLLK~LEeP----p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i 195 (491)
T PRK14964 130 NSAFNALLKTLEEP----APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEH 195 (491)
T ss_pred HHHHHHHHHHHhCC----CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCC
Confidence 34567889888863 3457888888999999999988 76 5699999999998888888776554443
No 69
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=8.5e-15 Score=159.76 Aligned_cols=157 Identities=17% Similarity=0.296 Sum_probs=120.6
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 274 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------- 274 (487)
.+|.+|++|+|++.+++.|...+. . ...+..|||+||||||||++|+++|+.+++
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~----~--------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALD----L--------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 368999999999999887765554 1 123556999999999999999999999976
Q ss_pred -----------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCc
Q 011374 275 -----------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (487)
Q Consensus 275 -----------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (487)
+++.++.++-...+.++++.... ....|+||||+|.+-
T Consensus 78 ~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------------------- 132 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------------------- 132 (647)
T ss_pred HHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-------------------------
Confidence 45556655433456677766543 235699999999772
Q ss_pred hhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCC
Q 011374 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEH 408 (487)
Q Consensus 338 ~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~ 408 (487)
....+.||..|+.- ++.+++|++|+.+.+|.+.+++ |+ .+++|..++.++....++..+..++.
T Consensus 133 ~~a~NALLKtLEEP----p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 133 RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred HHHHHHHHHHHHcC----CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 45678899998863 4567788888899999999998 85 78999999999999888887754433
No 70
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=8.9e-15 Score=162.16 Aligned_cols=158 Identities=19% Similarity=0.320 Sum_probs=117.8
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCc------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD------------ 275 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~------------ 275 (487)
..|.+|++|+|++.+++.|...+. . ...+..|||+||||||||++|+++|+.+++.
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~----~--------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALT----Q--------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----h--------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 468999999999998887655443 1 1235678999999999999999999999763
Q ss_pred ------------EEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCc
Q 011374 276 ------------VYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (487)
Q Consensus 276 ------------v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (487)
++.++..+......++++.... ....|+||||+|.+-
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------------------- 132 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------------------- 132 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-------------------------
Confidence 2334433223345566666443 235799999999772
Q ss_pred hhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCC
Q 011374 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHP 409 (487)
Q Consensus 338 ~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~ 409 (487)
...++.||..|+.- +..+++|++|+.+.+|.+.|++ |+ .+++|..++.++....++..+..++..
T Consensus 133 ~eAqNALLKtLEEP----P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~ 197 (944)
T PRK14949 133 RSSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLP 197 (944)
T ss_pred HHHHHHHHHHHhcc----CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 45678899999863 3456777788889999999988 76 679999999999998888877654433
No 71
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.62 E-value=3.4e-15 Score=169.59 Aligned_cols=156 Identities=16% Similarity=0.227 Sum_probs=115.5
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----------CCcEEE
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 278 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----------~~~v~~ 278 (487)
.|..+|.++|.++..+++++.|. ...+.+++|+||||||||++|+++|..+ +++++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHh-------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 36789999999988777776654 2345689999999999999999999998 788998
Q ss_pred eecCccc--------ChHHHHHHHHHc---cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhh-HHH
Q 011374 279 LELSSVE--------GNKDLRQILIAT---ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSG-LLN 346 (487)
Q Consensus 279 l~~~~~~--------~~~~l~~l~~~~---~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~-LL~ 346 (487)
++++.+. ....++.+|... ..++||||||||.+.+.... .+....+. |+.
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~------------------~~~~d~~~~lkp 301 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA------------------DGAMDAGNMLKP 301 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC------------------ccchhHHHHhcc
Confidence 8887752 134677787653 45799999999999753210 01111122 222
Q ss_pred HhhccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 347 FIDGLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 347 ~lDgl~s~~~~~~iiI~TTN~~~-----~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
.+. .++..+|+||+..+ .+|+||.| ||+ .|.++.|+.+++..+++....
T Consensus 302 ~l~------~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 302 ALA------RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred hhh------cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhh
Confidence 221 24688899988876 48999999 997 589999999999999877654
No 72
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=7.1e-15 Score=159.97 Aligned_cols=160 Identities=18% Similarity=0.309 Sum_probs=122.6
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 274 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------- 274 (487)
..|.+|++|+|.+.+++.|...+.. ...+.+|||+||||||||++|+++|+.+++
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 4789999999999999887776541 234578999999999999999999998854
Q ss_pred -----------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCc
Q 011374 275 -----------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (487)
Q Consensus 275 -----------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (487)
+++.++..+-.+...+++++... ....|+||||+|.+-
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------------------- 132 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------------------- 132 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-------------------------
Confidence 34455544444556788877643 345799999999662
Q ss_pred hhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCch
Q 011374 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF 411 (487)
Q Consensus 338 ~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 411 (487)
...++.||..|+.. .+.+++|++||.+.++.+.+++ |+ ..+.|..++.++....++..+..++....
T Consensus 133 ~~A~NALLKtLEEP----p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id 199 (709)
T PRK08691 133 KSAFNAMLKTLEEP----PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYE 199 (709)
T ss_pred HHHHHHHHHHHHhC----CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcC
Confidence 33467788888863 2457888899999999999886 87 67899999999999888888876654443
No 73
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.61 E-value=1.4e-14 Score=152.54 Aligned_cols=151 Identities=23% Similarity=0.320 Sum_probs=111.8
Q ss_pred cCCCCCccccccCHHHHHH---HHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCc
Q 011374 207 LDHPATFDTLAMDFDMKKM---IMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~---i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~ 283 (487)
.-+|.+|++++|+++.... +...+. . ....++||+||||||||++|+++|+.++.+++.++...
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~----~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIE----A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHH----c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 3478999999999877544 444332 1 12347999999999999999999999999999988765
Q ss_pred ccChHHHHHHHHHcc------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCC
Q 011374 284 VEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGD 357 (487)
Q Consensus 284 ~~~~~~l~~l~~~~~------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~ 357 (487)
. +...++.++.... .+.||||||||.+.. .....|+..++. .
T Consensus 72 ~-~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~-------------------------~~q~~LL~~le~------~ 119 (413)
T PRK13342 72 S-GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK-------------------------AQQDALLPHVED------G 119 (413)
T ss_pred c-cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-------------------------HHHHHHHHHhhc------C
Confidence 3 3456666665542 578999999998732 223456776663 2
Q ss_pred ceEEEEec--CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011374 358 ERIIIFTT--NHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 405 (487)
Q Consensus 358 ~~iiI~TT--N~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 405 (487)
.+++|++| |....++++|++ |+ ..+.|+.++.++...+++..+..
T Consensus 120 ~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 120 TITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 35566554 345689999999 88 67999999999999999887753
No 74
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2.2e-14 Score=153.74 Aligned_cols=158 Identities=20% Similarity=0.364 Sum_probs=118.6
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 274 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------- 274 (487)
..|.+|++|+|++.+++.|...+.. ...+..+|||||||||||++|+++|+.+.+
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 4789999999999988877665542 123456899999999999999999999853
Q ss_pred ----------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCch
Q 011374 275 ----------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR 338 (487)
Q Consensus 275 ----------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (487)
+++.++.+...+...++++.... ..+.|+||||+|.+. .
T Consensus 76 c~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-------------------------~ 130 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-------------------------K 130 (504)
T ss_pred hHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-------------------------H
Confidence 25666655444455566654332 346799999998652 3
Q ss_pred hhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCC
Q 011374 339 VTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHP 409 (487)
Q Consensus 339 ~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~ 409 (487)
..++.||..|+.- +...++|++||.+..+.+++.+ |+. +++|..++.++....++..+..++..
T Consensus 131 ~a~naLLk~LEep----~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 131 SAFNALLKTLEEP----PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred HHHHHHHHHHHhC----CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4567788888753 3457888889999999999988 764 79999999999998888877655443
No 75
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.9e-14 Score=156.45 Aligned_cols=160 Identities=18% Similarity=0.299 Sum_probs=123.1
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC--------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-------------- 273 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~-------------- 273 (487)
..|.+|++|+|++.+++.+...+.. ...+..||||||||||||++|+.+|..++
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 4689999999999988877766541 23457899999999999999999999985
Q ss_pred ----------CcEEEeecCcccChHHHHHHHHHcc------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCc
Q 011374 274 ----------FDVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (487)
Q Consensus 274 ----------~~v~~l~~~~~~~~~~l~~l~~~~~------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (487)
.+++.++.++-.+.+.++++..... ..-|++|||+|.+.
T Consensus 78 ~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------------------- 132 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------------------- 132 (559)
T ss_pred HHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-------------------------
Confidence 3567777665455667777776542 35799999999773
Q ss_pred hhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCch
Q 011374 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF 411 (487)
Q Consensus 338 ~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 411 (487)
....+.||..++.. +...++|++|+.++++.+.+++ |+. .+.|..++.++....++..+...+....
T Consensus 133 ~~a~naLLKtLEep----p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~ 199 (559)
T PRK05563 133 TGAFNALLKTLEEP----PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYE 199 (559)
T ss_pred HHHHHHHHHHhcCC----CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 23466788888753 3457888888889999999988 774 6899999999998888887765544443
No 76
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.60 E-value=8.1e-15 Score=166.90 Aligned_cols=202 Identities=16% Similarity=0.166 Sum_probs=135.4
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----------CCcEEE
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 278 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----------~~~v~~ 278 (487)
.|..+|.++|.++..+++++.|. ...+.+++|+||||||||++++++|..+ +.+++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 46689999999887776666553 2345688999999999999999999986 678888
Q ss_pred eecCccc--------ChHHHHHHHHHc---cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHH
Q 011374 279 LELSSVE--------GNKDLRQILIAT---ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNF 347 (487)
Q Consensus 279 l~~~~~~--------~~~~l~~l~~~~---~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 347 (487)
++++.+. ....++.++... ..++||||||||.+.+.... .......+-|...
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~-----------------~~~~d~~~~Lk~~ 297 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA-----------------EGAMDAGNMLKPA 297 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC-----------------cchhHHHHHhchh
Confidence 8877652 124677777654 35899999999998742110 0011112222222
Q ss_pred hhccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC--CCCc---hHHHHHH
Q 011374 348 IDGLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT--EHPL---FLEVEEL 417 (487)
Q Consensus 348 lDgl~s~~~~~~iiI~TTN~~~-----~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~--~~~l---~~~i~~l 417 (487)
+. .+...+|++||..+ .+|+||.| ||. .|.++.|+.+++..|++.+.... .|.. ...+...
T Consensus 298 l~------~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~ 368 (852)
T TIGR03346 298 LA------RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAA 368 (852)
T ss_pred hh------cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 21 24578888888663 57999999 996 58999999999999988754331 2221 2233332
Q ss_pred HhhcCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhc
Q 011374 418 IEKVEVTPADVAEQLMRDEVPKIALSGLIQFLQIKKRET 456 (487)
Q Consensus 418 ~~~~~~spa~i~~~l~~~~~~~~al~~l~~~l~~~~~~~ 456 (487)
+ .+|...|. ...-|++|++.+.++....+...
T Consensus 369 ~---~ls~~yi~----~r~lPdkAidlld~a~a~~~~~~ 400 (852)
T TIGR03346 369 A---TLSHRYIT----DRFLPDKAIDLIDEAAARIRMEI 400 (852)
T ss_pred H---Hhcccccc----ccCCchHHHHHHHHHHHHHHhhc
Confidence 2 23322222 22359999999999888776643
No 77
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.60 E-value=2.2e-14 Score=147.64 Aligned_cols=161 Identities=19% Similarity=0.343 Sum_probs=119.3
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
-..|.+|++++|.+.+++.+...+.. | ..+..||||||||+|||++|+++|..+..
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 35789999999999998888765541 1 24567999999999999999999998742
Q ss_pred ------------cEEEeecCcccChHHHHHHHHHcc------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCC
Q 011374 275 ------------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (487)
Q Consensus 275 ------------~v~~l~~~~~~~~~~l~~l~~~~~------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (487)
+++.++.....+...+++++..+. .+.|++|||+|.+.
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------------------ 130 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------------------ 130 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------------------
Confidence 345555443334445666766542 34699999998762
Q ss_pred chhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCch
Q 011374 337 NRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF 411 (487)
Q Consensus 337 ~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 411 (487)
....+.||..++.. +...++|++||.++.+.+++.+ |+ ..++|+.|+.++...++..++...+....
T Consensus 131 -~~~~~~Ll~~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~ 197 (355)
T TIGR02397 131 -KSAFNALLKTLEEP----PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIE 197 (355)
T ss_pred -HHHHHHHHHHHhCC----ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 23456688888753 3457788888999999999988 77 46999999999999999887765554444
No 78
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.3e-14 Score=156.07 Aligned_cols=161 Identities=16% Similarity=0.297 Sum_probs=120.9
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
...|.+|++++|++.+.+.|...+. . ...+..||||||+|||||++|+++|+.+++
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~----~--------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALT----Q--------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 3568999999999888877666543 1 123467899999999999999999999875
Q ss_pred -----------------cEEEeecCcccChHHHHHHHHHcc------CCeEEEEeccchhhhhhhHHHhhhcccchhhhh
Q 011374 275 -----------------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRS 331 (487)
Q Consensus 275 -----------------~v~~l~~~~~~~~~~l~~l~~~~~------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~ 331 (487)
+++.++..+-.+.+.+++++.... +..|++|||+|.+.
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------------- 137 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------------- 137 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-------------------
Confidence 355565554445567788776532 34699999999873
Q ss_pred cccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCch
Q 011374 332 ACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF 411 (487)
Q Consensus 332 ~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 411 (487)
....+.||..|+.- +...++|++|+.+.++.+.+++ |. .+++|..++.++....++..+..++....
T Consensus 138 ------~~a~NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie 204 (618)
T PRK14951 138 ------NTAFNAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAE 204 (618)
T ss_pred ------HHHHHHHHHhcccC----CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 33467788888753 3457788888889999988888 76 67999999999998888877765554443
No 79
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.2e-14 Score=153.05 Aligned_cols=159 Identities=18% Similarity=0.311 Sum_probs=117.7
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 274 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------- 274 (487)
..|.+|++++|++.+++.+...+. . ...+..|||+||||||||++|+++|+.+++
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~----~--------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALE----T--------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 468999999999999887766553 1 123456999999999999999999998864
Q ss_pred -----------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCc
Q 011374 275 -----------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (487)
Q Consensus 275 -----------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (487)
+++.++.....+...+++++... ....|++|||+|.+-
T Consensus 78 sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------------------- 132 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------------------- 132 (546)
T ss_pred HHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-------------------------
Confidence 55666654433445566665443 245799999999762
Q ss_pred hhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 338 ~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
....+.||..|+.. ++..++|++|+.+..+.+.+++ |. ..++|..++.++....++..+..++...
T Consensus 133 ~~a~naLLK~LEep----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~ 198 (546)
T PRK14957 133 KQSFNALLKTLEEP----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINS 198 (546)
T ss_pred HHHHHHHHHHHhcC----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 34567789888863 3456777777778888888887 76 6799999999998888877665544333
No 80
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=2.2e-14 Score=154.71 Aligned_cols=157 Identities=17% Similarity=0.318 Sum_probs=118.3
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
-..|.+|++++|++.+++.+...+. ....+.+|||+||||||||++|+++|..+.+
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~------------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAIL------------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 4579999999999998887766543 1233478999999999999999999999853
Q ss_pred ------------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCC
Q 011374 275 ------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (487)
Q Consensus 275 ------------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (487)
+++.++..+..+-..++.+.... ....|++|||+|.+-
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------------------ 132 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------------------ 132 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC------------------------
Confidence 45566654434455677666543 235699999999772
Q ss_pred chhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC
Q 011374 337 NRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITE 407 (487)
Q Consensus 337 ~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~ 407 (487)
....+.||..|+.. +...++|++|+.+.+|.+++++ |+. .++|+.++.++....+...+...+
T Consensus 133 -~~A~NaLLKtLEEP----p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~keg 195 (605)
T PRK05896 133 -TSAWNALLKTLEEP----PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEK 195 (605)
T ss_pred -HHHHHHHHHHHHhC----CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcC
Confidence 12356788888853 3457888888899999999998 764 699999999998888887665443
No 81
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=2.9e-14 Score=160.15 Aligned_cols=159 Identities=21% Similarity=0.326 Sum_probs=120.2
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
...|.+|++|+|++.+++.|...+. . | .....||||||+|||||++|+++|+.|++
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~----~-------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALD----S-------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----h-------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 4679999999999998888766554 1 1 23457999999999999999999999963
Q ss_pred --------------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhccc
Q 011374 275 --------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334 (487)
Q Consensus 275 --------------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (487)
+++.++..+....+.++++.... ....|+||||+|.+-
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt---------------------- 133 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT---------------------- 133 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC----------------------
Confidence 34555554433455666654332 345799999999873
Q ss_pred CCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCC
Q 011374 335 QGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHP 409 (487)
Q Consensus 335 ~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~ 409 (487)
....+.||..|+.. ....++|++|+.+++|-+.|.+ |. .++.|..++.++...+++..+..++..
T Consensus 134 ---~~a~NaLLK~LEEp----P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 134 ---PQGFNALLKIVEEP----PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred ---HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 34467799999864 3457888888999999999987 76 579999999999998888877555443
No 82
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.2e-14 Score=154.37 Aligned_cols=162 Identities=23% Similarity=0.340 Sum_probs=121.9
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
...|.+|++|+|++.+++.|...+. . | ..+..||||||+|||||++|+++|+.+++
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~----~-------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALD----A-------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 3579999999999988887766554 1 1 23456999999999999999999998863
Q ss_pred --------------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhccc
Q 011374 275 --------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334 (487)
Q Consensus 275 --------------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (487)
+++.++.++..+-+.++++.... ...-|++|||+|.+-
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt---------------------- 131 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT---------------------- 131 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC----------------------
Confidence 35556655444556666655332 345799999999773
Q ss_pred CCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchH
Q 011374 335 QGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFL 412 (487)
Q Consensus 335 ~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~ 412 (487)
....+.||..|+.. +...++|++|+.+++|.+++++ |. .+++|..++.++....+..++..++....+
T Consensus 132 ---~~A~NALLK~LEEp----p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~ 199 (584)
T PRK14952 132 ---TAGFNALLKIVEEP----PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDD 199 (584)
T ss_pred ---HHHHHHHHHHHhcC----CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 23567789988863 3568888888999999999988 74 679999999999988888877665544433
No 83
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=3.4e-14 Score=155.98 Aligned_cols=157 Identities=19% Similarity=0.340 Sum_probs=118.1
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
...|.+|++|+|++.+++.+...+. ....+..||||||||||||++|+++|..+.+
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~------------~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIK------------SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 4579999999999999888777664 1234678999999999999999999998854
Q ss_pred ---------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchh
Q 011374 275 ---------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRV 339 (487)
Q Consensus 275 ---------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (487)
+++.++..+-.+...++++.... ....|++|||+|.+- ..
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-------------------------~~ 133 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-------------------------KS 133 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-------------------------HH
Confidence 23334433222345567766544 245799999999773 23
Q ss_pred hHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC
Q 011374 340 TLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITE 407 (487)
Q Consensus 340 ~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~ 407 (487)
..+.||..|+.. +...++|++|+.+++|.+++++ |+ .+++|..++.++....+...+...+
T Consensus 134 A~NALLKtLEEP----P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~keg 194 (725)
T PRK07133 134 AFNALLKTLEEP----PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKEN 194 (725)
T ss_pred HHHHHHHHhhcC----CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcC
Confidence 467788888863 3457888888999999999998 77 4799999999998888877654443
No 84
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.1e-14 Score=155.09 Aligned_cols=159 Identities=17% Similarity=0.326 Sum_probs=119.9
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 274 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------- 274 (487)
..|.+|++|+|++.+++.+...+.. ...+..|||+||||||||++|+++|+.+++
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 4689999999999998877665541 223567999999999999999999999965
Q ss_pred -----------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCc
Q 011374 275 -----------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (487)
Q Consensus 275 -----------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (487)
+++.++.+.-.....+++++... ....|++|||+|.+.
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------------------- 132 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------------------- 132 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-------------------------
Confidence 35556654434456677777544 235699999999772
Q ss_pred hhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 338 ~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
....+.||..|+.. ++..++|++|+.++++.+.+++ |+ ..++|..++.++....+...+..++...
T Consensus 133 ~~a~naLLK~LEep----p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~ 198 (527)
T PRK14969 133 KSAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPF 198 (527)
T ss_pred HHHHHHHHHHHhCC----CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 23467788888863 3457788888888899888887 76 6799999999999888877775544433
No 85
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=6.3e-14 Score=145.36 Aligned_cols=160 Identities=18% Similarity=0.321 Sum_probs=116.9
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
-.+|.+|++++|.+..++.+...+. . ...+.+||||||||+|||++++++|+.++.
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~----~--------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIE----N--------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 4579999999999998877766554 1 234578999999999999999999998843
Q ss_pred cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHh
Q 011374 275 DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFI 348 (487)
Q Consensus 275 ~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 348 (487)
++++++.....+...+++++..+ ..+.|++|||+|.+. ...++.|+..+
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-------------------------~~~~~~ll~~l 132 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-------------------------SAAFNAFLKTL 132 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-------------------------HHHHHHHHHHH
Confidence 33444443333446777777643 235799999999663 12356688877
Q ss_pred hccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 349 DGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 349 Dgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
+.. +...++|++|+.+..+.+++.+ |+ ..++++.++.++...++...+...+..+
T Consensus 133 e~~----~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i 187 (367)
T PRK14970 133 EEP----PAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKF 187 (367)
T ss_pred hCC----CCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCC
Confidence 753 3346777888888999999987 65 3589999999998888877665544433
No 86
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=1.3e-13 Score=143.73 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=114.0
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCc----------------
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD---------------- 275 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~---------------- 275 (487)
.|++|+|++.+++.+...+..... .+...+...+.+|||+||||+|||++|+++|..+.++
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 589999999999998887764332 2344455577899999999999999999999988553
Q ss_pred -------EEEeecCc-ccChHHHHHHHHHcc------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhH
Q 011374 276 -------VYDLELSS-VEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTL 341 (487)
Q Consensus 276 -------v~~l~~~~-~~~~~~l~~l~~~~~------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 341 (487)
++.+.... ...-..+++++.... ...|++|||+|.+.. ...
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~-------------------------~aa 134 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE-------------------------RAA 134 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH-------------------------HHH
Confidence 22232221 123456777776542 346999999998732 234
Q ss_pred hhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011374 342 SGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASN 401 (487)
Q Consensus 342 s~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~ 401 (487)
+.||..|+.- +.+.++|++|+.++.|.|++++ |+ ..+.|+.|+.++....+..
T Consensus 135 naLLk~LEep----~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 135 NALLKAVEEP----PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred HHHHHHhhcC----CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence 6788888753 3456777777779999999998 76 6899999999998877764
No 87
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=1.2e-13 Score=146.57 Aligned_cols=156 Identities=19% Similarity=0.273 Sum_probs=114.4
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 274 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------- 274 (487)
..|.+|++|+|++.+++.+...+. . ...+..||||||||+|||++|+++|+.+..
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~----~--------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALR----F--------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 468999999999988877666553 1 234678999999999999999999998853
Q ss_pred ------------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCC
Q 011374 275 ------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (487)
Q Consensus 275 ------------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (487)
+++.++.....+.+.++.+.... ..+.|++|||+|.+.
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------------------ 134 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------------------ 134 (451)
T ss_pred HHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------------------
Confidence 34445443323345555444322 357899999999773
Q ss_pred chhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC
Q 011374 337 NRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITE 407 (487)
Q Consensus 337 ~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~ 407 (487)
....+.|+..|+.- ++..++|++||.+.+|.+++.+ |+. .++|..++.++....+...+...+
T Consensus 135 -~~~~n~LLk~lEep----~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg 197 (451)
T PRK06305 135 -KEAFNSLLKTLEEP----PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEG 197 (451)
T ss_pred -HHHHHHHHHHhhcC----CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcC
Confidence 22356788888863 3457788888999999999998 774 699999999998888777655443
No 88
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.58 E-value=4.7e-14 Score=133.80 Aligned_cols=179 Identities=19% Similarity=0.249 Sum_probs=148.6
Q ss_pred CCCceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCc
Q 011374 199 TEIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFD 275 (487)
Q Consensus 199 ~~~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~ 275 (487)
.+...+++-.+|..+.+|+|.+.+|+.+++....|+.+. +-.++||||..|||||||++|+-+++ +..
T Consensus 45 ~~~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~---------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 45 IGYLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGL---------PANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred cCcccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCC---------cccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 345677777888899999999999999999999998752 34689999999999999999999887 677
Q ss_pred EEEeecCcccChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCC
Q 011374 276 VYDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSC 355 (487)
Q Consensus 276 v~~l~~~~~~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~ 355 (487)
++.++-.++.+-..|.+++...+.+-|||+||+- -.........|-..|||-.+..
T Consensus 116 LVEV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLS------------------------Fe~gd~~yK~LKs~LeG~ve~r 171 (287)
T COG2607 116 LVEVDKEDLATLPDLVELLRARPEKFILFCDDLS------------------------FEEGDDAYKALKSALEGGVEGR 171 (287)
T ss_pred EEEEcHHHHhhHHHHHHHHhcCCceEEEEecCCC------------------------CCCCchHHHHHHHHhcCCcccC
Confidence 8999888888888889999999999999999984 2334556777889999988888
Q ss_pred CCceEEEEecCCCCCCCccc--------------------cCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 356 GDERIIIFTTNHKDRLDPAL--------------------LRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 356 ~~~~iiI~TTN~~~~LD~AL--------------------lRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
+.+++|.+|+|+...|+.-. .-..||..-+-|+.|+.++...|+.+|....+...
T Consensus 172 P~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 172 PANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred CCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 88999999999875554221 11349999999999999999999999987555444
No 89
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.7e-14 Score=152.82 Aligned_cols=162 Identities=17% Similarity=0.287 Sum_probs=118.4
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCc-----------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD----------- 275 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~----------- 275 (487)
...|.+|++|+|++.+++.|...+. . ......|||+||||||||++|+++|+.+++.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~----~--------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQ----E--------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHH----c--------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 4579999999999988777765553 1 1234589999999999999999999999752
Q ss_pred -------------EEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCC
Q 011374 276 -------------VYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (487)
Q Consensus 276 -------------v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (487)
++.++...-...+.++.+.... ....||||||+|.+.
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------------------ 132 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------------------ 132 (624)
T ss_pred HHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------------------
Confidence 5556543323344555543222 245799999999773
Q ss_pred chhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchH
Q 011374 337 NRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFL 412 (487)
Q Consensus 337 ~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~ 412 (487)
....+.||..|+.. ....++|++||.+..+.+.|++ |+ .+++|+.++.++....++..+..++....+
T Consensus 133 -~~a~naLLk~LEEP----~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~ 200 (624)
T PRK14959 133 -REAFNALLKTLEEP----PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDP 200 (624)
T ss_pred -HHHHHHHHHHhhcc----CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 23457788888763 2457888999999999998888 77 478999999999998888777655444433
No 90
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.57 E-value=8.6e-15 Score=163.22 Aligned_cols=198 Identities=19% Similarity=0.235 Sum_probs=127.7
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----------CCcEEEeec
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLEL 281 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----------~~~v~~l~~ 281 (487)
.++.++|.++..+++++.+.. ..+.++||+||||||||++|+++|..+ +..++.+++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 577889988888877775552 235678999999999999999999875 566777765
Q ss_pred Cccc--------ChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc
Q 011374 282 SSVE--------GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL 351 (487)
Q Consensus 282 ~~~~--------~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl 351 (487)
+.+. .+..++.++... ..++||||||||.+++.... ......+. |.+..+
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~-----------------~~g~~d~~---nlLkp~ 310 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA-----------------SGGQVDAA---NLIKPL 310 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC-----------------CCcHHHHH---HHHHHH
Confidence 5442 234566666544 45789999999999753210 01111122 222222
Q ss_pred ccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC----CCCchHHH-HHHHhhc
Q 011374 352 WSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT----EHPLFLEV-EELIEKV 421 (487)
Q Consensus 352 ~s~~~~~~iiI~TTN~~~-----~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~----~~~l~~~i-~~l~~~~ 421 (487)
.. .+++.+|++||.++ .+||||.| ||+ .|.++.|+.+++..|++.+.... +....++. ...+.
T Consensus 311 L~--~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~-- 383 (758)
T PRK11034 311 LS--SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVE-- 383 (758)
T ss_pred Hh--CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHH--
Confidence 11 24688899999765 57999999 996 69999999999999998754321 11222221 11111
Q ss_pred CCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 011374 422 EVTPADVAEQLMRDEVPKIALSGLIQFLQIKKR 454 (487)
Q Consensus 422 ~~spa~i~~~l~~~~~~~~al~~l~~~l~~~~~ 454 (487)
+|. .++-...-|+.|++.+.++....+.
T Consensus 384 -ls~----ryi~~r~lPdKaidlldea~a~~~~ 411 (758)
T PRK11034 384 -LAV----KYINDRHLPDKAIDVIDEAGARARL 411 (758)
T ss_pred -Hhh----ccccCccChHHHHHHHHHHHHhhcc
Confidence 111 1111234588888888888765543
No 91
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=4e-14 Score=154.57 Aligned_cols=158 Identities=17% Similarity=0.269 Sum_probs=120.1
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 274 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------- 274 (487)
..|.+|++|+|++.+++.+...+.. ...+..||||||||||||++|+++|+.+++
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 4689999999999998888766541 234667999999999999999999999864
Q ss_pred -----------cEEEeecCcccChHHHHHHHHHcc------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCc
Q 011374 275 -----------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (487)
Q Consensus 275 -----------~v~~l~~~~~~~~~~l~~l~~~~~------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (487)
+++.++..+....++++++..... ...|++|||+|.+-
T Consensus 78 ~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------------------- 132 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------------------- 132 (576)
T ss_pred HHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-------------------------
Confidence 255565544444566777665432 34699999999773
Q ss_pred hhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCC
Q 011374 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHP 409 (487)
Q Consensus 338 ~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~ 409 (487)
....+.||..|+.- +...++|++||.+++|.+.+++ |+ .+++|..++.++....+...+..++..
T Consensus 133 ~~a~naLLk~LEep----p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 133 TNAFNALLKTLEEP----PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred HHHHHHHHHHHHcC----CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 33467889998863 3467888999999999999988 76 479999999999888877766554433
No 92
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.56 E-value=4.1e-13 Score=138.83 Aligned_cols=200 Identities=16% Similarity=0.124 Sum_probs=126.1
Q ss_pred ccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC---------CcEEEeecCc
Q 011374 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---------FDVYDLELSS 283 (487)
Q Consensus 213 fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~---------~~v~~l~~~~ 283 (487)
.+.+.|.++..+.|...+...+.+ ..+.+++||||||||||++++++++.+. +.++.+++..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 357889999998888877655432 2245799999999999999999998763 5677778765
Q ss_pred ccChHH--------------------------HHHHHH---HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhccc
Q 011374 284 VEGNKD--------------------------LRQILI---ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334 (487)
Q Consensus 284 ~~~~~~--------------------------l~~l~~---~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (487)
..+... +..++. ....+.||+|||+|.+..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~--------------------- 143 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG--------------------- 143 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc---------------------
Confidence 432111 112222 123467999999998852
Q ss_pred CCchhhHhhHHHHhhccccCCCCceEEEEecCCCC---CCCccccCCCcee-eEEEeCCCCHHHHHHHHHHhhCc--CCC
Q 011374 335 QGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKD---RLDPALLRPGRMD-VHIHMSYCTPCGFKMLASNYLGI--TEH 408 (487)
Q Consensus 335 ~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~---~LD~ALlRpGRfd-~~I~~~~p~~~~~~~l~~~~l~~--~~~ 408 (487)
.....+..|+...+- ....+..+.+|+++|.++ .+++.+.+ ||. ..|+|++++.+++..+++..+.. ...
T Consensus 144 -~~~~~L~~l~~~~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~ 219 (365)
T TIGR02928 144 -DDDDLLYQLSRARSN-GDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDG 219 (365)
T ss_pred -CCcHHHHhHhccccc-cCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCC
Confidence 012234444443211 111224578889999875 68888877 674 67999999999999999987742 111
Q ss_pred CchHHHHHHHhhcCCCHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHhhc
Q 011374 409 PLFLEVEELIEKVEVTPADVAEQLM-RDEVPKIALSGLIQFLQIKKRET 456 (487)
Q Consensus 409 ~l~~~i~~l~~~~~~spa~i~~~l~-~~~~~~~al~~l~~~l~~~~~~~ 456 (487)
...+++..++. ...- ..+++..+++.+..+......+.
T Consensus 220 ~~~~~~l~~i~----------~~~~~~~Gd~R~al~~l~~a~~~a~~~~ 258 (365)
T TIGR02928 220 VLDDGVIPLCA----------ALAAQEHGDARKAIDLLRVAGEIAEREG 258 (365)
T ss_pred CCChhHHHHHH----------HHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence 22222222221 1111 23677788777777666554433
No 93
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.55 E-value=5.8e-14 Score=152.01 Aligned_cols=176 Identities=20% Similarity=0.277 Sum_probs=117.3
Q ss_pred CceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc--------
Q 011374 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-------- 272 (487)
Q Consensus 201 ~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-------- 272 (487)
.|.. ...|.+|++++|.....+.+...+. .+.+.++|||||||||||++|++++++.
T Consensus 54 ~~~~--~~rp~~f~~iiGqs~~i~~l~~al~-------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~ 118 (531)
T TIGR02902 54 PLSE--KTRPKSFDEIIGQEEGIKALKAALC-------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPF 118 (531)
T ss_pred hHHH--hhCcCCHHHeeCcHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCc
Confidence 4554 3578999999999988777764321 1235689999999999999999998753
Q ss_pred --CCcEEEeecCccc-ChHHHH-HHH--------------------------HHccCCeEEEEeccchhhhhhhHHHhhh
Q 011374 273 --NFDVYDLELSSVE-GNKDLR-QIL--------------------------IATENKSILVVEDIDCCLEMQDRLAKAK 322 (487)
Q Consensus 273 --~~~v~~l~~~~~~-~~~~l~-~l~--------------------------~~~~~~sIl~IDeiD~~~~~~~~~~~~~ 322 (487)
+.+++.++++... ++..+. .++ .......+|||||||.+-.
T Consensus 119 ~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~--------- 189 (531)
T TIGR02902 119 KEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP--------- 189 (531)
T ss_pred CCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH---------
Confidence 3578888876421 111110 000 0112357999999998732
Q ss_pred cccchhhhhcccCCchhhHhhHHHHhhcc--------cc-----------------CCCCceEEEEecCCCCCCCccccC
Q 011374 323 AAIPDLYRSACNQGNRVTLSGLLNFIDGL--------WS-----------------SCGDERIIIFTTNHKDRLDPALLR 377 (487)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~ls~LL~~lDgl--------~s-----------------~~~~~~iiI~TTN~~~~LD~ALlR 377 (487)
...+.||..|+.- .. .+.+-++|++|||.|+.|+|++++
T Consensus 190 ----------------~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs 253 (531)
T TIGR02902 190 ----------------VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS 253 (531)
T ss_pred ----------------HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh
Confidence 2334444444210 00 011236777888999999999999
Q ss_pred CCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHh
Q 011374 378 PGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE 419 (487)
Q Consensus 378 pGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~ 419 (487)
|+ ..|+|+.++.+++..++++.+...+..+.++.-+++.
T Consensus 254 --R~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~ 292 (531)
T TIGR02902 254 --RC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIV 292 (531)
T ss_pred --hh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 87 4699999999999999999887655555444444443
No 94
>PRK06893 DNA replication initiation factor; Validated
Probab=99.55 E-value=8.3e-14 Score=135.28 Aligned_cols=173 Identities=14% Similarity=0.180 Sum_probs=106.8
Q ss_pred ccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011374 206 NLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (487)
Q Consensus 206 ~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~ 282 (487)
....+.+||+.++.+.. .....+.. .........++||||||||||+|++|+|+++ +..+..+++.
T Consensus 8 ~~~~~~~fd~f~~~~~~--~~~~~~~~---------~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 8 HQIDDETLDNFYADNNL--LLLDSLRK---------NFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCCCcccccccccCChH--HHHHHHHH---------HhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 34566799999976532 12222211 1111223457999999999999999999986 3455555554
Q ss_pred cccChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEE
Q 011374 283 SVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIII 362 (487)
Q Consensus 283 ~~~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI 362 (487)
... ....+++....+..+|+||||+.+.+. . .....|++.++..... +..++|
T Consensus 77 ~~~--~~~~~~~~~~~~~dlLilDDi~~~~~~--------------------~---~~~~~l~~l~n~~~~~--~~~ill 129 (229)
T PRK06893 77 KSQ--YFSPAVLENLEQQDLVCLDDLQAVIGN--------------------E---EWELAIFDLFNRIKEQ--GKTLLL 129 (229)
T ss_pred Hhh--hhhHHHHhhcccCCEEEEeChhhhcCC--------------------h---HHHHHHHHHHHHHHHc--CCcEEE
Confidence 321 122244555566789999999977431 1 1112344555544322 234555
Q ss_pred EecC-CCCCCC---ccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHH
Q 011374 363 FTTN-HKDRLD---PALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEE 416 (487)
Q Consensus 363 ~TTN-~~~~LD---~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ 416 (487)
+|+| .|..++ |.|.++.+.+..+.++.|+.+++.++++......+..+.+++..
T Consensus 130 its~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~ 187 (229)
T PRK06893 130 ISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVAN 187 (229)
T ss_pred EeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5555 565554 88988555567899999999999999988776444444444433
No 95
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.5e-13 Score=147.18 Aligned_cols=160 Identities=19% Similarity=0.288 Sum_probs=121.3
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC-------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN------------- 273 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~------------- 273 (487)
...|.+|++|+|++.+++.+...+. ....+..||||||||+|||++|+++|+.+.
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~------------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALD------------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 3578999999999999888776653 123566799999999999999999999873
Q ss_pred -----------CcEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCC
Q 011374 274 -----------FDVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (487)
Q Consensus 274 -----------~~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (487)
.+++.++.++-.+-+.++++.... ...-|++|||+|.+.
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------------------ 130 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------------------ 130 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------------------
Confidence 245666554433456777777553 234699999998772
Q ss_pred chhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 337 NRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 337 ~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
....+.||..|+.. +....+|++|+.+.+|.+++.+ |. .+++|..++.++....+...+..++...
T Consensus 131 -~~A~NALLK~LEEp----p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i 196 (535)
T PRK08451 131 -KEAFNALLKTLEEP----PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSY 196 (535)
T ss_pred -HHHHHHHHHHHhhc----CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 34567789888864 3446777888888999999998 75 5899999999998888887776555444
No 96
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.3e-13 Score=147.33 Aligned_cols=160 Identities=19% Similarity=0.305 Sum_probs=116.5
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
...|.+|++++|++.+.+.+...+. ....+..||||||||+|||++|+++|..+++
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~------------~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVK------------LQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHH------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 3578999999999999887766664 1234567999999999999999999999863
Q ss_pred ------------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCC
Q 011374 275 ------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (487)
Q Consensus 275 ------------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (487)
+++.++.++-.+...++.+.... ..+.|++|||+|.+.
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------------------ 132 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------------------ 132 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------------------
Confidence 34555554433444555554333 245799999999763
Q ss_pred chhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 337 NRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 337 ~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
....+.||..++.. +...++|++|+.++.+.+++.+ |+. .+.|+.++.++....+...+...+...
T Consensus 133 -~~a~naLLk~LEep----p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~i 198 (486)
T PRK14953 133 -KEAFNALLKTLEEP----PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEY 198 (486)
T ss_pred -HHHHHHHHHHHhcC----CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 22346678887753 3446777777888889999887 664 699999999999988888776554443
No 97
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.55 E-value=2.7e-13 Score=134.27 Aligned_cols=129 Identities=23% Similarity=0.204 Sum_probs=93.9
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHH---------------------------------HHH
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLR---------------------------------QIL 294 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~---------------------------------~l~ 294 (487)
++.+||+||||||||++|+++|..++.+++.+++..-....++. .++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 45799999999999999999999999999999876532222221 112
Q ss_pred HHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc-cC-----------CCCceEEE
Q 011374 295 IATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW-SS-----------CGDERIII 362 (487)
Q Consensus 295 ~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~-s~-----------~~~~~iiI 362 (487)
.....+.+|+|||||.+- ..+.+.|+..|+.-. .. ...+..||
T Consensus 101 ~A~~~g~~lllDEi~r~~-------------------------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvI 155 (262)
T TIGR02640 101 LAVREGFTLVYDEFTRSK-------------------------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVI 155 (262)
T ss_pred HHHHcCCEEEEcchhhCC-------------------------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEE
Confidence 223456899999999652 345666777775321 00 01134689
Q ss_pred EecCCC-----CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 363 FTTNHK-----DRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 363 ~TTN~~-----~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
+|+|.. ..++++|++ || ..+++++|+.+...+|++...+
T Consensus 156 aTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~ 199 (262)
T TIGR02640 156 FTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD 199 (262)
T ss_pred EeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC
Confidence 999975 357899999 98 6899999999999999988764
No 98
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=7.1e-14 Score=146.44 Aligned_cols=156 Identities=14% Similarity=0.277 Sum_probs=113.1
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 274 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------- 274 (487)
..|.+|++|+|++.+++.|...+. . | ..+..||||||||||||++|+++|+.+.+
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~----~-------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLR----M-------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHH----h-------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 579999999999999887766554 1 1 24567999999999999999999999965
Q ss_pred -------------------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhh
Q 011374 275 -------------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLY 329 (487)
Q Consensus 275 -------------------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~ 329 (487)
+++.++......-+.++++.... ....|+||||+|.+.
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~----------------- 140 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS----------------- 140 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------------
Confidence 23334433333346666665544 245799999999773
Q ss_pred hhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC
Q 011374 330 RSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITE 407 (487)
Q Consensus 330 ~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~ 407 (487)
....+.|+..++.. +...++|++|+.+.++-+++.+ |.. .++|..++.++....+...+...+
T Consensus 141 --------~~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g 203 (397)
T PRK14955 141 --------IAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEG 203 (397)
T ss_pred --------HHHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcC
Confidence 22345678777743 3456777777888888888887 664 699999999998888877765443
No 99
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.54 E-value=3.7e-14 Score=161.08 Aligned_cols=200 Identities=16% Similarity=0.163 Sum_probs=131.7
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----------CCcEEEee
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLE 280 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----------~~~v~~l~ 280 (487)
..++.++|.++..+++++.|. ...+.+++|+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 368899999998888887664 2346789999999999999999999987 47899998
Q ss_pred cCccc--------ChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHH-HHhh
Q 011374 281 LSSVE--------GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLL-NFID 349 (487)
Q Consensus 281 ~~~~~--------~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL-~~lD 349 (487)
++.+. .+..++.++..+ ..++||||||||.+++.... .+....+.+| ..+.
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~------------------~g~~~~a~lLkp~l~ 304 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA------------------EGAIDAANILKPALA 304 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC------------------CCcccHHHHhHHHHh
Confidence 77652 235778888765 34789999999999753210 1111222333 3332
Q ss_pred ccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc----CCCCchHHHHHHHhh
Q 011374 350 GLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI----TEHPLFLEVEELIEK 420 (487)
Q Consensus 350 gl~s~~~~~~iiI~TTN~~~-----~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~----~~~~l~~~i~~l~~~ 420 (487)
.+++.+|++||..+ ..||+|.| ||.. |.++.|+.++...|++..... ....+.+++-..+.
T Consensus 305 ------rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~- 374 (821)
T CHL00095 305 ------RGELQCIGATTLDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAA- 374 (821)
T ss_pred ------CCCcEEEEeCCHHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH-
Confidence 24577888888653 57999999 9974 899999999988887653321 11112222211111
Q ss_pred cCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhc
Q 011374 421 VEVTPADVAEQLMRDEVPKIALSGLIQFLQIKKRET 456 (487)
Q Consensus 421 ~~~spa~i~~~l~~~~~~~~al~~l~~~l~~~~~~~ 456 (487)
.++. .++-...-|+.|++.+.++....+...
T Consensus 375 -~ls~----~yi~~r~lPdkaidlld~a~a~~~~~~ 405 (821)
T CHL00095 375 -KLSD----QYIADRFLPDKAIDLLDEAGSRVRLIN 405 (821)
T ss_pred -HHhh----ccCccccCchHHHHHHHHHHHHHHhhc
Confidence 1110 011112358888888888887776643
No 100
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.54 E-value=7.4e-14 Score=156.77 Aligned_cols=161 Identities=24% Similarity=0.230 Sum_probs=118.7
Q ss_pred Cccc-cccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHH
Q 011374 212 TFDT-LAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDL 290 (487)
Q Consensus 212 ~fd~-l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l 290 (487)
.+|. ..|.+++|++|++.+..... .+...+..++|+||||||||++++++|+.++.+++.++++.+.+...+
T Consensus 319 ~l~~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i 391 (784)
T PRK10787 319 ILDTDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEI 391 (784)
T ss_pred HhhhhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHh
Confidence 3555 88999999999987764332 122334568999999999999999999999999999998877544333
Q ss_pred ---------------HHHHHHcc-CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc---
Q 011374 291 ---------------RQILIATE-NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL--- 351 (487)
Q Consensus 291 ---------------~~l~~~~~-~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl--- 351 (487)
.+.+.... ...||+|||||.+.. .......+.|+..+|.-
T Consensus 392 ~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~---------------------~~~g~~~~aLlevld~~~~~ 450 (784)
T PRK10787 392 RGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSS---------------------DMRGDPASALLEVLDPEQNV 450 (784)
T ss_pred ccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhccc---------------------ccCCCHHHHHHHHhccccEE
Confidence 22333332 356899999998842 11123467788888731
Q ss_pred -cc-------CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 352 -WS-------SCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 352 -~s-------~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
+. ..-.++++|+|+|.. .|+|||+. ||+ .|.++.++.++..+|+++|+.
T Consensus 451 ~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 451 AFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 00 011458999999987 49999999 996 599999999999999999994
No 101
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.4e-13 Score=149.34 Aligned_cols=159 Identities=19% Similarity=0.287 Sum_probs=117.9
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 274 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------- 274 (487)
.+|.+|++++|++.+++.+...+. . ...+..||||||||+|||++|+++|+.+++
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~----~--------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIE----S--------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 468999999999999988776664 1 124567999999999999999999999864
Q ss_pred -----------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCc
Q 011374 275 -----------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (487)
Q Consensus 275 -----------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (487)
+++.++...-..-..++++.... ...-|++|||+|.+-
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------------------- 132 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------------------- 132 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-------------------------
Confidence 34445443323345666665332 345799999999772
Q ss_pred hhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 338 ~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
...++.||..++.. +...++|++|+.+.+|.++|.+ |+. .++|..++.++....++..+...+..+
T Consensus 133 ~~a~naLLK~LEep----p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~i 198 (563)
T PRK06647 133 NSAFNALLKTIEEP----PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKY 198 (563)
T ss_pred HHHHHHHHHhhccC----CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 33567788888853 3567888888889999999988 774 689999999999888887765444333
No 102
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.1e-13 Score=148.72 Aligned_cols=161 Identities=19% Similarity=0.307 Sum_probs=120.3
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCc-----------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD----------- 275 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~----------- 275 (487)
...|.+|++|+|++.+++.|...+. . | ..+.++||+||||+|||++|+++|+.+++.
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~----~-------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFE----T-------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 4579999999999999888766553 1 2 235689999999999999999999998653
Q ss_pred ------------------EEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhh
Q 011374 276 ------------------VYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRS 331 (487)
Q Consensus 276 ------------------v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~ 331 (487)
++.++..+..+-..+++++... ....|+||||+|.+-
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------------- 145 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------------- 145 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-------------------
Confidence 3333333333456777776544 245799999998772
Q ss_pred cccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCch
Q 011374 332 ACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF 411 (487)
Q Consensus 332 ~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 411 (487)
....+.||..|+.. +...++|++|+.++++.+.+++ |+ ..++|..++.++....+...+..++....
T Consensus 146 ------~~a~naLLKtLEeP----p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~ 212 (598)
T PRK09111 146 ------TAAFNALLKTLEEP----PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVE 212 (598)
T ss_pred ------HHHHHHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 33467788888863 3457888888888889888887 76 57999999999998888887765544443
No 103
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.53 E-value=7.7e-14 Score=136.66 Aligned_cols=166 Identities=22% Similarity=0.297 Sum_probs=117.5
Q ss_pred CceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------
Q 011374 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------ 274 (487)
Q Consensus 201 ~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------ 274 (487)
.|.. ...|.+||+++|++.+.+.+...+.. .--..|||||||||||||.|.++|.+++.
T Consensus 25 swte--KYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~ 89 (346)
T KOG0989|consen 25 SWTE--KYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPC 89 (346)
T ss_pred chHH--HhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCcccccc
Confidence 4554 67899999999999999988877752 11246999999999999999999999965
Q ss_pred cEEEeecCcccChH-------HHHHHHHHc--------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchh
Q 011374 275 DVYDLELSSVEGNK-------DLRQILIAT--------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRV 339 (487)
Q Consensus 275 ~v~~l~~~~~~~~~-------~l~~l~~~~--------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (487)
.+.+++.+.-.+.+ ...++.... +..-|++|||.|.+. ..
T Consensus 90 rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-------------------------sd 144 (346)
T KOG0989|consen 90 RVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-------------------------SD 144 (346)
T ss_pred chhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh-------------------------HH
Confidence 23334444332211 111111111 112699999999884 35
Q ss_pred hHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHH
Q 011374 340 TLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE 413 (487)
Q Consensus 340 ~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~ 413 (487)
+.+.|...||.. .....+|+.||++++|.+.+.+ |.. .+.|+....+.....++.....++....++
T Consensus 145 aq~aLrr~mE~~----s~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~ 211 (346)
T KOG0989|consen 145 AQAALRRTMEDF----SRTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDD 211 (346)
T ss_pred HHHHHHHHHhcc----ccceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHH
Confidence 567899999974 2457889999999999999988 874 588877777766666666666665555443
No 104
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.53 E-value=1.3e-13 Score=132.90 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=105.2
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCc
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~ 283 (487)
...+.+||+.+.. ..+.+++.+..+.. ...++.++|+||||||||++++++++++ +.+++.+++..
T Consensus 8 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~---------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 8 LPDDPTFDNFYAG--GNAELLAALRQLAA---------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCCchhhcCcCcC--CcHHHHHHHHHHHh---------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 3445689998832 33445555554432 1235689999999999999999999887 46777888777
Q ss_pred ccChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEE
Q 011374 284 VEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIF 363 (487)
Q Consensus 284 ~~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~ 363 (487)
+.. ....++.......+|+|||+|.+... ......|...++..... + ..+|+
T Consensus 77 ~~~--~~~~~~~~~~~~~lLvIDdi~~l~~~-----------------------~~~~~~L~~~l~~~~~~--~-~~iIi 128 (226)
T TIGR03420 77 LAQ--ADPEVLEGLEQADLVCLDDVEAIAGQ-----------------------PEWQEALFHLYNRVREA--G-GRLLI 128 (226)
T ss_pred HHH--hHHHHHhhcccCCEEEEeChhhhcCC-----------------------hHHHHHHHHHHHHHHHc--C-CeEEE
Confidence 632 22344444556679999999977320 01123344445443221 1 24555
Q ss_pred ecC-CCCCCC---ccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCcCCCCchHH
Q 011374 364 TTN-HKDRLD---PALLRPGRM--DVHIHMSYCTPCGFKMLASNYLGITEHPLFLE 413 (487)
Q Consensus 364 TTN-~~~~LD---~ALlRpGRf--d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~ 413 (487)
|+| .+..++ +.|.+ |+ ..+|.++.++.+++..+++.+....+..+.++
T Consensus 129 ts~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~ 182 (226)
T TIGR03420 129 AGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDE 182 (226)
T ss_pred ECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 555 444432 67776 65 57899999999999999887665433344333
No 105
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.53 E-value=2.8e-13 Score=138.30 Aligned_cols=163 Identities=13% Similarity=0.234 Sum_probs=108.6
Q ss_pred CceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC-----Cc
Q 011374 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FD 275 (487)
Q Consensus 201 ~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~-----~~ 275 (487)
.|.. -..|.+|++++|.+++++.+...+. . +. ..++|||||||||||++|+++|+++. .+
T Consensus 4 ~w~~--ky~P~~~~~~~g~~~~~~~L~~~~~----~-------~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~ 68 (337)
T PRK12402 4 LWTE--KYRPALLEDILGQDEVVERLSRAVD----S-------PN--LPHLLVQGPPGSGKTAAVRALARELYGDPWENN 68 (337)
T ss_pred chHH--hhCCCcHHHhcCCHHHHHHHHHHHh----C-------CC--CceEEEECCCCCCHHHHHHHHHHHhcCcccccc
Confidence 3543 4679999999999888777655443 1 11 13699999999999999999999984 34
Q ss_pred EEEeecCcccC--------------------------hHHHHHHHHHc-------cCCeEEEEeccchhhhhhhHHHhhh
Q 011374 276 VYDLELSSVEG--------------------------NKDLRQILIAT-------ENKSILVVEDIDCCLEMQDRLAKAK 322 (487)
Q Consensus 276 v~~l~~~~~~~--------------------------~~~l~~l~~~~-------~~~sIl~IDeiD~~~~~~~~~~~~~ 322 (487)
++.+++..+.. ...++.++... ..+.+|+|||+|.+..
T Consensus 69 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------- 139 (337)
T PRK12402 69 FTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------- 139 (337)
T ss_pred eEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH---------
Confidence 56666654310 11222222221 2356999999997632
Q ss_pred cccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011374 323 AAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNY 402 (487)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~ 402 (487)
.....|+..++... ....+|++|+.+..+.+.|.+ |+ ..+++++|+.+++..+++..
T Consensus 140 ----------------~~~~~L~~~le~~~----~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~ 196 (337)
T PRK12402 140 ----------------DAQQALRRIMEQYS----RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESI 196 (337)
T ss_pred ----------------HHHHHHHHHHHhcc----CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHH
Confidence 12234555665432 224566677777788888887 65 56999999999999998887
Q ss_pred hCcCCCCc
Q 011374 403 LGITEHPL 410 (487)
Q Consensus 403 l~~~~~~l 410 (487)
+...+..+
T Consensus 197 ~~~~~~~~ 204 (337)
T PRK12402 197 AEAEGVDY 204 (337)
T ss_pred HHHcCCCC
Confidence 76554443
No 106
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.6e-13 Score=148.20 Aligned_cols=156 Identities=14% Similarity=0.260 Sum_probs=114.5
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 274 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------- 274 (487)
..|.+|++++|++.+++.+...+. ....+.+|||+||||||||++|+++|+.+++
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~------------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLR------------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 468999999999988887665443 1244567999999999999999999999976
Q ss_pred -------------------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhh
Q 011374 275 -------------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLY 329 (487)
Q Consensus 275 -------------------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~ 329 (487)
+++.++.....+.+.++.+.... ..+-|++|||+|.+.
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt----------------- 140 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS----------------- 140 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-----------------
Confidence 22333333333346677766544 345799999999773
Q ss_pred hhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC
Q 011374 330 RSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITE 407 (487)
Q Consensus 330 ~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~ 407 (487)
....+.||..|+.. +...++|++|+.+.+|-+++.+ |. ..++|..++.++....+...+...+
T Consensus 141 --------~~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~eg 203 (620)
T PRK14954 141 --------TAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEG 203 (620)
T ss_pred --------HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcC
Confidence 22356788888863 3446777777888999999887 65 5799999999998887777665443
No 107
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.52 E-value=6.8e-13 Score=145.54 Aligned_cols=193 Identities=19% Similarity=0.209 Sum_probs=126.2
Q ss_pred cccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----------CCcEEEeecCc
Q 011374 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLELSS 283 (487)
Q Consensus 214 d~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----------~~~v~~l~~~~ 283 (487)
+.|.+.++..++|...|...+.. ..+...+++|||||||||++++.+..++ .+.++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 56778888888887777655542 2223335699999999999999998877 25678888865
Q ss_pred ccCh-----------------------HHHHHHHHHc----cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCC
Q 011374 284 VEGN-----------------------KDLRQILIAT----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (487)
Q Consensus 284 ~~~~-----------------------~~l~~l~~~~----~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (487)
+.+. ..+..+|... ....||+|||||.+...
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK---------------------- 884 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK---------------------- 884 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc----------------------
Confidence 4322 2233344332 12469999999988531
Q ss_pred chhhHhhHHHHhhccccCCCCceEEEEecCC---CCCCCccccCCCceee-EEEeCCCCHHHHHHHHHHhhCcCCCCchH
Q 011374 337 NRVTLSGLLNFIDGLWSSCGDERIIIFTTNH---KDRLDPALLRPGRMDV-HIHMSYCTPCGFKMLASNYLGITEHPLFL 412 (487)
Q Consensus 337 ~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~---~~~LD~ALlRpGRfd~-~I~~~~p~~~~~~~l~~~~l~~~~~~l~~ 412 (487)
.+..|-.|++... . .+..++||+++|. ++.|+|.+.. ||.. .|.|++++.+++..|++..+......+.+
T Consensus 885 ~QDVLYnLFR~~~---~-s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdD 958 (1164)
T PTZ00112 885 TQKVLFTLFDWPT---K-INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDH 958 (1164)
T ss_pred HHHHHHHHHHHhh---c-cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCH
Confidence 1233333443322 1 2345788899985 6778888887 6643 48899999999999998877643222333
Q ss_pred HHHHHHhhcCCCHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 011374 413 EVEELIEKVEVTPADVAEQLMRDEVPKIALSGLIQFLQI 451 (487)
Q Consensus 413 ~i~~l~~~~~~spa~i~~~l~~~~~~~~al~~l~~~l~~ 451 (487)
++-+++.. -.....+|++.||+.|..+++.
T Consensus 959 dAIELIAr---------kVAq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 959 TAIQLCAR---------KVANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred HHHHHHHH---------hhhhcCCHHHHHHHHHHHHHhh
Confidence 44333321 0112358999999999988875
No 108
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.52 E-value=8.9e-14 Score=145.55 Aligned_cols=178 Identities=21% Similarity=0.267 Sum_probs=114.9
Q ss_pred Cccc-cccCHHHHHHHHHHHHHHHhcHHHHHHh--cC-CCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccC-
Q 011374 212 TFDT-LAMDFDMKKMIMDDLERFLKRKEFYKRV--GK-AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG- 286 (487)
Q Consensus 212 ~fd~-l~g~~~~K~~i~~~l~~fl~~~~~y~~~--g~-~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~- 286 (487)
.++. |+|++++|+.+...+...+++-...... +. .++.++||+||||||||++|+++|..++.+++.++++.+..
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 4554 8999999999877665443332110000 11 24578999999999999999999999999999999877632
Q ss_pred -------hHHHHHHHHH------ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcccc
Q 011374 287 -------NKDLRQILIA------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWS 353 (487)
Q Consensus 287 -------~~~l~~l~~~------~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s 353 (487)
...+..++.. ...++||||||||.+..... .. ...+ +..+..+.+.||..|||-..
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~--~~------~~~~---d~s~~~vQ~~LL~~Leg~~~ 216 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSE--NP------SITR---DVSGEGVQQALLKILEGTVA 216 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccC--CC------CcCC---CcccHHHHHHHHHHHhcCeE
Confidence 1223333322 23679999999999854210 00 0000 11224578899999997521
Q ss_pred ----CCC-----CceEEEEecCCCC----------------------------C------------------------CC
Q 011374 354 ----SCG-----DERIIIFTTNHKD----------------------------R------------------------LD 372 (487)
Q Consensus 354 ----~~~-----~~~iiI~TTN~~~----------------------------~------------------------LD 372 (487)
..| .+.++|.|+|-.. . +.
T Consensus 217 ~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~ 296 (412)
T PRK05342 217 SVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLI 296 (412)
T ss_pred EeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhh
Confidence 111 2346777777510 0 12
Q ss_pred ccccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011374 373 PALLRPGRMDVHIHMSYCTPCGFKMLASNY 402 (487)
Q Consensus 373 ~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~ 402 (487)
|+|+ ||+|..+.|...+.+++..|+...
T Consensus 297 PEfl--gRld~iv~f~~L~~~~L~~Il~~~ 324 (412)
T PRK05342 297 PEFI--GRLPVVATLEELDEEALVRILTEP 324 (412)
T ss_pred HHHh--CCCCeeeecCCCCHHHHHHHHHHH
Confidence 3333 599999999999999999888743
No 109
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.51 E-value=1.2e-12 Score=139.39 Aligned_cols=192 Identities=18% Similarity=0.237 Sum_probs=121.1
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-----CCcEEEeec
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLEL 281 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-----~~~v~~l~~ 281 (487)
+.+..+||+.+..+.-+. ....+..+...+ |.. ..+++||||||||||+|++|+|+++ +..++.+++
T Consensus 115 l~~~~tfd~fv~g~~n~~-a~~~~~~~~~~~------~~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNRL-AHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCCCCcccccccCCCcHH-HHHHHHHHHhCc------Ccc-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 344458999654333222 233333333221 222 2568999999999999999999998 456777776
Q ss_pred CcccC-------hHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccC
Q 011374 282 SSVEG-------NKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSS 354 (487)
Q Consensus 282 ~~~~~-------~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~ 354 (487)
..+.. ......+.....+..+|+|||||.+.+. ..+...|+..++.+...
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~-----------------------~~~~~~l~~~~n~l~~~ 243 (450)
T PRK00149 187 EKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGK-----------------------ERTQEEFFHTFNALHEA 243 (450)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCC-----------------------HHHHHHHHHHHHHHHHC
Confidence 65411 0111223333446789999999987431 12334466666655433
Q ss_pred CCCceEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHH-hhcCCCHHHH
Q 011374 355 CGDERIIIFTTNHKDR---LDPALLRPGRMD--VHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELI-EKVEVTPADV 428 (487)
Q Consensus 355 ~~~~~iiI~TTN~~~~---LD~ALlRpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~-~~~~~spa~i 428 (487)
+..+||.++..|.. ++++|.+ ||. ..+++..|+.+++..+++..+...+..+.+++..++ ....-+..++
T Consensus 244 --~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 244 --GKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred --CCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHH
Confidence 22344444445544 6788888 885 689999999999999999988766666666655544 4455677776
Q ss_pred HHHHh
Q 011374 429 AEQLM 433 (487)
Q Consensus 429 ~~~l~ 433 (487)
...|.
T Consensus 320 ~~~l~ 324 (450)
T PRK00149 320 EGALN 324 (450)
T ss_pred HHHHH
Confidence 66654
No 110
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.3e-13 Score=147.08 Aligned_cols=156 Identities=19% Similarity=0.308 Sum_probs=116.4
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
...|.+|++++|.+.+++.|...+.. | ....+||||||||||||++|+++|+.+++
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 45789999999999988887665541 1 12357999999999999999999999865
Q ss_pred --------------cEEEeecCcccChHHHHHHHHHcc------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhccc
Q 011374 275 --------------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334 (487)
Q Consensus 275 --------------~v~~l~~~~~~~~~~l~~l~~~~~------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (487)
+++.++.......+.+++++..+. ...|+||||+|.+-
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt---------------------- 134 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS---------------------- 134 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC----------------------
Confidence 344555443334567777775542 35799999999772
Q ss_pred CCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC
Q 011374 335 QGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT 406 (487)
Q Consensus 335 ~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 406 (487)
....+.||..|+.- ....++|++|++++.+-+.|++ |+ ..++|..++.++....+...+..+
T Consensus 135 ---~~a~naLLK~LEeP----p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~ke 196 (620)
T PRK14948 135 ---TAAFNALLKTLEEP----PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKE 196 (620)
T ss_pred ---HHHHHHHHHHHhcC----CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHh
Confidence 34567789999853 3457888888889999999987 76 568999999988777666655443
No 111
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.3e-13 Score=145.04 Aligned_cols=195 Identities=19% Similarity=0.208 Sum_probs=131.4
Q ss_pred cccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC----cEEEeecCcccCh--
Q 011374 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF----DVYDLELSSVEGN-- 287 (487)
Q Consensus 214 d~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~----~v~~l~~~~~~~~-- 287 (487)
.+++..+..|+...+....+ ......+||+||+|||||.|++++++++.. ++..++|+.+...
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 55666666776665532222 334567999999999999999999999854 4556788877432
Q ss_pred ----HHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEE
Q 011374 288 ----KDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERII 361 (487)
Q Consensus 288 ----~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ii 361 (487)
+.+..+|..+ ..|+||++||+||++........ ........+..+||.+-......+..+.+
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~------------q~~~~~~rla~flnqvi~~y~~~~~~ia~ 544 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENG------------QDGVVSERLAAFLNQVIKIYLKRNRKIAV 544 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCC------------cchHHHHHHHHHHHHHHHHHHccCcEEEE
Confidence 3344445444 47999999999999862111100 01122334555564443333333445688
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC-CCchHHHHHHHhhc-CCCHHHHHHH
Q 011374 362 IFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITE-HPLFLEVEELIEKV-EVTPADVAEQ 431 (487)
Q Consensus 362 I~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~-~~l~~~i~~l~~~~-~~spa~i~~~ 431 (487)
|+|.+....|+|-|..|++|+.++.++.|...+|.+|+++.+.... ...+++++-+..++ ++.+-|+.-+
T Consensus 545 Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 545 IATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred EEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHH
Confidence 9999999999999999999999999999999999999999887542 23345555554444 3666666443
No 112
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=5.4e-13 Score=146.24 Aligned_cols=160 Identities=17% Similarity=0.269 Sum_probs=116.1
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
...|.+|++|+|++.+++.|...+.. ...+..||||||||+|||++|+++|+.+++
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 35799999999999999887665541 123456899999999999999999998853
Q ss_pred -------------cEEEeecCcccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccC
Q 011374 275 -------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335 (487)
Q Consensus 275 -------------~v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (487)
+++.++.+.....+.++++.... ....|+||||+|.+.
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~----------------------- 133 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS----------------------- 133 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-----------------------
Confidence 34445544334455666665432 245799999999773
Q ss_pred CchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 336 GNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 336 ~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
...++.||..++.. ....++|++|+..+.+.+.+.+ |. ..++|..++..+...++...+...+..+
T Consensus 134 --~~a~naLLk~LEep----p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i 199 (585)
T PRK14950 134 --TAAFNALLKTLEEP----PPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINL 199 (585)
T ss_pred --HHHHHHHHHHHhcC----CCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 23456788888864 2457778888888888888887 66 4689999999998888877765544333
No 113
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=6.1e-13 Score=145.87 Aligned_cols=161 Identities=16% Similarity=0.298 Sum_probs=122.9
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC-------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN------------- 273 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~------------- 273 (487)
...|.+|++|+|++.+++.+...+. ....+..||||||+|+|||++|+++|..+.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~------------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIA------------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 4579999999999999888877664 123466799999999999999999999885
Q ss_pred ------------CcEEEeecCcccChHHHHHHHHHcc------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccC
Q 011374 274 ------------FDVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335 (487)
Q Consensus 274 ------------~~v~~l~~~~~~~~~~l~~l~~~~~------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (487)
.+++.++..+......++.++..+. ..-|++|||+|.+-
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls----------------------- 134 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS----------------------- 134 (614)
T ss_pred chHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-----------------------
Confidence 4566666654444567777775542 35699999999772
Q ss_pred CchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCch
Q 011374 336 GNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF 411 (487)
Q Consensus 336 ~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 411 (487)
....+.||..|+.. +...++|++|+.+.+|-++|++ |. ..++|..++.++....+...+..++....
T Consensus 135 --~~a~naLLK~LEep----p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~ 201 (614)
T PRK14971 135 --QAAFNAFLKTLEEP----PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAE 201 (614)
T ss_pred --HHHHHHHHHHHhCC----CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 23466788888864 3457788888888999999988 76 45999999999998888877665544443
No 114
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.49 E-value=2.4e-13 Score=151.79 Aligned_cols=159 Identities=13% Similarity=0.257 Sum_probs=112.7
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHH
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQIL 294 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~ 294 (487)
.|+|+++.++.|.+.+.....+-. . ...+...+||+||||||||.+|+++|..++.+++.++++.+.....+.+++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~---~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG---H-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc---C-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 368888888888887764422100 0 012234689999999999999999999999999999998864322222222
Q ss_pred ---------------HH---ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhc-ccc-C
Q 011374 295 ---------------IA---TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDG-LWS-S 354 (487)
Q Consensus 295 ---------------~~---~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg-l~s-~ 354 (487)
.. ....+||||||||.+- ....+.||+.||. ... .
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~-------------------------~~v~~~LLq~ld~G~ltd~ 589 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH-------------------------PDVFNLLLQVMDNGTLTDN 589 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh-------------------------HHHHHHHHHHHhcCeeecC
Confidence 11 1346899999999772 3467788888873 211 1
Q ss_pred CC-----CceEEEEecCCC-------------------------CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 355 CG-----DERIIIFTTNHK-------------------------DRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 355 ~~-----~~~iiI~TTN~~-------------------------~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
.| .+.|||+|||.- ..+.|.|+. |+|..|.|++.+.++...|+..++.
T Consensus 590 ~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 590 NGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred CCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 11 357899999932 124577777 9999999999999999999987774
No 115
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.48 E-value=5.7e-13 Score=138.94 Aligned_cols=223 Identities=22% Similarity=0.277 Sum_probs=133.1
Q ss_pred Cccc-cccCHHHHHHHHHHHHHHHhcHHHHHH----hcCC-CcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc
Q 011374 212 TFDT-LAMDFDMKKMIMDDLERFLKRKEFYKR----VGKA-WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE 285 (487)
Q Consensus 212 ~fd~-l~g~~~~K~~i~~~l~~fl~~~~~y~~----~g~~-~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~ 285 (487)
.++. |+|+++.|+.+...+....++-..... -+.+ .+.++||+||||||||++|+++|..++.++..++++.+.
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc
Confidence 3554 589999999887766543333110000 0111 145799999999999999999999999999988877652
Q ss_pred C--------hHHHHHHHHH------ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc
Q 011374 286 G--------NKDLRQILIA------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL 351 (487)
Q Consensus 286 ~--------~~~l~~l~~~------~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl 351 (487)
. ...+..++.. ...++||||||||.+...+.... ..+ +-....+.+.||+.|||.
T Consensus 154 ~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s--------~~~---dvsg~~vq~~LL~iLeG~ 222 (413)
T TIGR00382 154 EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPS--------ITR---DVSGEGVQQALLKIIEGT 222 (413)
T ss_pred ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccc--------ccc---cccchhHHHHHHHHhhcc
Confidence 1 2233444332 23578999999998864211000 000 112236788899999986
Q ss_pred ccC----CC-----CceEEEEecCCC---------------------------C-----------------------CCC
Q 011374 352 WSS----CG-----DERIIIFTTNHK---------------------------D-----------------------RLD 372 (487)
Q Consensus 352 ~s~----~~-----~~~iiI~TTN~~---------------------------~-----------------------~LD 372 (487)
... .| .+.++|+|+|-. + .+.
T Consensus 223 ~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~ 302 (413)
T TIGR00382 223 VANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLI 302 (413)
T ss_pred ceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhH
Confidence 421 11 245888998861 0 022
Q ss_pred ccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHh----hcCCCHHHHHHHHhccCCHHHHHHHHHHH
Q 011374 373 PALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE----KVEVTPADVAEQLMRDEVPKIALSGLIQF 448 (487)
Q Consensus 373 ~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~----~~~~spa~i~~~l~~~~~~~~al~~l~~~ 448 (487)
|+|+ ||+|..+.|.+.+.+++..|+...+. .+..+...++. ...++++-+..+.-+..++....+.|...
T Consensus 303 PEfl--gRld~Iv~f~pL~~~~L~~Il~~~~n----~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~i 376 (413)
T TIGR00382 303 PEFI--GRLPVIATLEKLDEEALIAILTKPKN----ALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSI 376 (413)
T ss_pred HHHh--CCCCeEeecCCCCHHHHHHHHHHHHH----HHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHH
Confidence 3443 59999999999999999888865432 12333333332 23466666655554434444333444433
Q ss_pred HHH
Q 011374 449 LQI 451 (487)
Q Consensus 449 l~~ 451 (487)
++.
T Consensus 377 ie~ 379 (413)
T TIGR00382 377 VEG 379 (413)
T ss_pred HHH
Confidence 333
No 116
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.48 E-value=1.4e-12 Score=132.00 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=112.0
Q ss_pred CceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC-----Cc
Q 011374 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FD 275 (487)
Q Consensus 201 ~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~-----~~ 275 (487)
.|.. ...|.+|++++|.+++++.+...+. . +. ..++|||||||||||++++++++.+. .+
T Consensus 6 ~w~~--kyrP~~~~~~~g~~~~~~~l~~~i~----~-------~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~ 70 (319)
T PRK00440 6 IWVE--KYRPRTLDEIVGQEEIVERLKSYVK----E-------KN--MPHLLFAGPPGTGKTTAALALARELYGEDWREN 70 (319)
T ss_pred ccch--hhCCCcHHHhcCcHHHHHHHHHHHh----C-------CC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 5654 6789999999999988877766543 1 11 12589999999999999999999973 34
Q ss_pred EEEeecCcccChHHHHHHHHH----c----cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHH
Q 011374 276 VYDLELSSVEGNKDLRQILIA----T----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNF 347 (487)
Q Consensus 276 v~~l~~~~~~~~~~l~~l~~~----~----~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 347 (487)
++.++.+.......++..+.. . ..+.+|+|||+|.+.. .....|+..
T Consensus 71 ~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-------------------------~~~~~L~~~ 125 (319)
T PRK00440 71 FLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-------------------------DAQQALRRT 125 (319)
T ss_pred eEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-------------------------HHHHHHHHH
Confidence 455544443322223222211 1 2356999999997732 123456666
Q ss_pred hhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 348 IDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 348 lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
++... ....+|+++|.+..+.+++.+ |+. .++|+.++.++...+++.++...+..+
T Consensus 126 le~~~----~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i 181 (319)
T PRK00440 126 MEMYS----QNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEI 181 (319)
T ss_pred HhcCC----CCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 66532 235677788888888888887 765 599999999999999988886555443
No 117
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.48 E-value=9.4e-13 Score=146.38 Aligned_cols=157 Identities=22% Similarity=0.265 Sum_probs=107.1
Q ss_pred CceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 201 ~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
.|.. ...|.+|++++|++..... ...+...+.. + ...++|||||||||||++|+++|+.++.+++.++
T Consensus 17 PLae--k~RP~tldd~vGQe~ii~~-~~~L~~~i~~-------~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 17 PLAD--RLRPRTLEEFVGQDHILGE-GRLLRRAIKA-------D--RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred ChHH--hcCCCcHHHhcCcHHHhhh-hHHHHHHHhc-------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 4544 3469999999999877642 1122222221 1 1246899999999999999999999999988887
Q ss_pred cCcccChHHHHHHHHH-------ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcccc
Q 011374 281 LSSVEGNKDLRQILIA-------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWS 353 (487)
Q Consensus 281 ~~~~~~~~~l~~l~~~-------~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s 353 (487)
.... ....++..+.. ...+.||||||||.+.. .....|+..++.
T Consensus 85 a~~~-~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-------------------------~qQdaLL~~lE~--- 135 (725)
T PRK13341 85 AVLA-GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-------------------------AQQDALLPWVEN--- 135 (725)
T ss_pred hhhh-hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH-------------------------HHHHHHHHHhcC---
Confidence 6532 22334443332 23467999999997732 123446666653
Q ss_pred CCCCceEEEEec--CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 354 SCGDERIIIFTT--NHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 354 ~~~~~~iiI~TT--N~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
..+++|++| |....+++++++ |. ..+.|+.++.+++..+++.++.
T Consensus 136 ---g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 136 ---GTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred ---ceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 235666544 334678999998 64 4599999999999999998875
No 118
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.48 E-value=4.6e-12 Score=132.40 Aligned_cols=157 Identities=18% Similarity=0.167 Sum_probs=106.3
Q ss_pred ccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-----CCcEEEeecCcccCh
Q 011374 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELSSVEGN 287 (487)
Q Consensus 213 fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-----~~~v~~l~~~~~~~~ 287 (487)
.+.+++.++..++|...+...+.+ ..+.+++||||||||||++++.+++.+ ++.++.+++....+.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 356778787777777766544432 224568999999999999999999987 567788887643211
Q ss_pred -----------------------HHHHHH-H---HHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhh
Q 011374 288 -----------------------KDLRQI-L---IATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVT 340 (487)
Q Consensus 288 -----------------------~~l~~l-~---~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (487)
..+... . .....+.||+|||+|.+.. ......
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~---------------------~~~~~~ 158 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE---------------------KEGNDV 158 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc---------------------cCCchH
Confidence 111111 1 1123458999999998851 112345
Q ss_pred HhhHHHHhhccccCCCCceEEEEecCCC---CCCCccccCCCce-eeEEEeCCCCHHHHHHHHHHhhC
Q 011374 341 LSGLLNFIDGLWSSCGDERIIIFTTNHK---DRLDPALLRPGRM-DVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 341 ls~LL~~lDgl~s~~~~~~iiI~TTN~~---~~LD~ALlRpGRf-d~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
+..|+..++... +..+.+|+++|.. +.+++.+.+ |+ ...|+|++++.++...+++..+.
T Consensus 159 l~~l~~~~~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 159 LYSLLRAHEEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred HHHHHHhhhccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 666666665442 2357788888865 457777765 55 35789999999999999988774
No 119
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.48 E-value=7e-13 Score=128.32 Aligned_cols=164 Identities=16% Similarity=0.193 Sum_probs=102.7
Q ss_pred ccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011374 206 NLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (487)
Q Consensus 206 ~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~ 282 (487)
+...|.+||++++... +.++..+..+.. +....++++|+||||||||+|++++++++ +.+++.+++.
T Consensus 10 ~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 10 GPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 3456678999873322 223344443322 23345789999999999999999999976 5677777766
Q ss_pred cccChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEE
Q 011374 283 SVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIII 362 (487)
Q Consensus 283 ~~~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI 362 (487)
... ..+.......+|+|||+|.+.. .....|+..++..... ...++|
T Consensus 80 ~~~------~~~~~~~~~~~liiDdi~~l~~-------------------------~~~~~L~~~~~~~~~~--~~~~vl 126 (227)
T PRK08903 80 SPL------LAFDFDPEAELYAVDDVERLDD-------------------------AQQIALFNLFNRVRAH--GQGALL 126 (227)
T ss_pred HhH------HHHhhcccCCEEEEeChhhcCc-------------------------hHHHHHHHHHHHHHHc--CCcEEE
Confidence 542 1123344567999999997621 1123344555444322 224566
Q ss_pred EecCCCC---CCCccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHH
Q 011374 363 FTTNHKD---RLDPALLRPGRM--DVHIHMSYCTPCGFKMLASNYLGITEHPLFLEV 414 (487)
Q Consensus 363 ~TTN~~~---~LD~ALlRpGRf--d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i 414 (487)
+|++.+. .+.+.|.+ || ...|+++.|+.++...++..+....+..+.++.
T Consensus 127 ~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~a 181 (227)
T PRK08903 127 VAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEV 181 (227)
T ss_pred EeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 6666432 35567776 66 578999999999888888766554444444433
No 120
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.47 E-value=1.1e-12 Score=137.79 Aligned_cols=191 Identities=16% Similarity=0.206 Sum_probs=119.2
Q ss_pred cCCCCCccccc-cCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-----CCcEEEee
Q 011374 207 LDHPATFDTLA-MDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLE 280 (487)
Q Consensus 207 ~~~p~~fd~l~-g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-----~~~v~~l~ 280 (487)
+.+..+||+.+ |... . .....+..+...+ |. ...+++||||||||||+|++|+|+++ +..++.++
T Consensus 103 l~~~~tfd~fi~g~~n-~-~a~~~~~~~~~~~------~~-~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSN-R-LAHAAALAVAENP------GK-AYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCCcccccccCCcH-H-HHHHHHHHHHhCc------Cc-cCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 44456899954 5332 2 1233333333221 21 23468999999999999999999988 56677777
Q ss_pred cCcccC-------hHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcccc
Q 011374 281 LSSVEG-------NKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWS 353 (487)
Q Consensus 281 ~~~~~~-------~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s 353 (487)
+..+.. ...+..+........+|+|||||.+.+. ..+...|+..++.+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~-----------------------~~~~~~l~~~~n~~~~ 230 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGK-----------------------ERTQEEFFHTFNALHE 230 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCC-----------------------HHHHHHHHHHHHHHHH
Confidence 655311 0111122223345679999999977421 1223345666655543
Q ss_pred CCCCceEEEEecCCCC---CCCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHH-HhhcCCCHHH
Q 011374 354 SCGDERIIIFTTNHKD---RLDPALLRPGRMD--VHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEEL-IEKVEVTPAD 427 (487)
Q Consensus 354 ~~~~~~iiI~TTN~~~---~LD~ALlRpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l-~~~~~~spa~ 427 (487)
. +..+||.+++.|. .+++.|.+ ||. ..++++.|+.+++..+++..+...+..+.+++..+ +....-+..+
T Consensus 231 ~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 231 N--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred C--CCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHH
Confidence 2 2244444444554 36688887 885 58999999999999999999887766666665544 4456667777
Q ss_pred HHHHHh
Q 011374 428 VAEQLM 433 (487)
Q Consensus 428 i~~~l~ 433 (487)
+...+.
T Consensus 307 l~~~l~ 312 (405)
T TIGR00362 307 LEGALN 312 (405)
T ss_pred HHHHHH
Confidence 766653
No 121
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.46 E-value=9.7e-13 Score=128.29 Aligned_cols=168 Identities=17% Similarity=0.193 Sum_probs=99.9
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC---CcEEEeecCc
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSS 283 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~---~~v~~l~~~~ 283 (487)
..+..+||+.+-. ..+.++..+..+... +..+.++||||||||||+|++++|+++. ..+..+++..
T Consensus 15 ~~~~~~fd~f~~~--~n~~a~~~l~~~~~~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 15 LPDDETFASFYPG--DNDSLLAALQNALRQ---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCcCCccccccC--ccHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 3445589998733 122344555444321 1235789999999999999999999864 3455555443
Q ss_pred ccChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEE
Q 011374 284 VEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIF 363 (487)
Q Consensus 284 ~~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~ 363 (487)
.. ....+++....+-.+|+||||+.+... ......|.+.++..... +...+|+.
T Consensus 84 ~~--~~~~~~~~~~~~~dlliiDdi~~~~~~-----------------------~~~~~~lf~l~n~~~e~-g~~~li~t 137 (235)
T PRK08084 84 RA--WFVPEVLEGMEQLSLVCIDNIECIAGD-----------------------ELWEMAIFDLYNRILES-GRTRLLIT 137 (235)
T ss_pred Hh--hhhHHHHHHhhhCCEEEEeChhhhcCC-----------------------HHHHHHHHHHHHHHHHc-CCCeEEEe
Confidence 21 112233333334468999999977321 11222233444433221 22245555
Q ss_pred ecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCcCCCCchHH
Q 011374 364 TTNHKDR---LDPALLRPGRMD--VHIHMSYCTPCGFKMLASNYLGITEHPLFLE 413 (487)
Q Consensus 364 TTN~~~~---LD~ALlRpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~ 413 (487)
+++.|.. +.|.|.+ |+. ..+++..|+.+++.++++......+..+.++
T Consensus 138 s~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~ 190 (235)
T PRK08084 138 GDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPED 190 (235)
T ss_pred CCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 5556655 5789998 874 7899999999999999877554333333333
No 122
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.1e-12 Score=141.02 Aligned_cols=170 Identities=16% Similarity=0.210 Sum_probs=124.2
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc------cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhH
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDR 317 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~------~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~ 317 (487)
.....+||+|+||||||++++++|.+++.+++.+++.++ .++..+...|..+ .+|+|||+-++|.+.- ++
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~i--d~ 506 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGI--DQ 506 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeee--cC
Confidence 334568999999999999999999999999999999887 4567788888776 4699999999998852 11
Q ss_pred HHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHH
Q 011374 318 LAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKM 397 (487)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~ 397 (487)
.+.. ...-...+..++. +|.... .....|+|+||+..+.|++.+.+ -|-..|.++.|+.++|.+
T Consensus 507 dgge------------d~rl~~~i~~~ls-~e~~~~-~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~ 570 (953)
T KOG0736|consen 507 DGGE------------DARLLKVIRHLLS-NEDFKF-SCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLE 570 (953)
T ss_pred CCch------------hHHHHHHHHHHHh-cccccC-CCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHH
Confidence 1100 0111223333333 233322 23468999999999999999998 788899999999999999
Q ss_pred HHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 398 LASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 398 l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
+++.|+......-......++... .|+.+++..++-
T Consensus 571 iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~ 607 (953)
T KOG0736|consen 571 ILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVA 607 (953)
T ss_pred HHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhc
Confidence 999999744322223344555554 599999877654
No 123
>PRK08727 hypothetical protein; Validated
Probab=99.44 E-value=2.3e-12 Score=125.43 Aligned_cols=164 Identities=20% Similarity=0.235 Sum_probs=104.2
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCc
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~ 283 (487)
.....+||+.++.+.- .+..+..... | .+...++||||+|||||+|++|+|+++ +..+..+++..
T Consensus 12 ~~~~~~f~~f~~~~~n---~~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 12 YPSDQRFDSYIAAPDG---LLAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCCcCChhhccCCcHH---HHHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 3444589998876652 2222221111 1 233459999999999999999998876 55666666554
Q ss_pred ccChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEE
Q 011374 284 VEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIF 363 (487)
Q Consensus 284 ~~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~ 363 (487)
.. ..+...+....+..+|+|||||.+... . .....|++.++..... +.-+|+
T Consensus 80 ~~--~~~~~~~~~l~~~dlLiIDDi~~l~~~--------------------~---~~~~~lf~l~n~~~~~---~~~vI~ 131 (233)
T PRK08727 80 AA--GRLRDALEALEGRSLVALDGLESIAGQ--------------------R---EDEVALFDFHNRARAA---GITLLY 131 (233)
T ss_pred hh--hhHHHHHHHHhcCCEEEEeCcccccCC--------------------h---HHHHHHHHHHHHHHHc---CCeEEE
Confidence 32 345566666677789999999977421 1 1122333444433221 233555
Q ss_pred ecC-CCCCC---CccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCcCCCCchH
Q 011374 364 TTN-HKDRL---DPALLRPGRM--DVHIHMSYCTPCGFKMLASNYLGITEHPLFL 412 (487)
Q Consensus 364 TTN-~~~~L---D~ALlRpGRf--d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~ 412 (487)
|+| .|..+ +|+|.+ || ..++.++.|+.+++..+++......+..+.+
T Consensus 132 ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~ 184 (233)
T PRK08727 132 TARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDE 184 (233)
T ss_pred ECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 555 56655 789998 86 6789999999999999999866543333333
No 124
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.44 E-value=1.3e-12 Score=146.86 Aligned_cols=154 Identities=19% Similarity=0.308 Sum_probs=109.2
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCC----CcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHH-
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKD- 289 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~----~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~- 289 (487)
.|+|+++.++.|.+.+... +.|.. +...+||+||||||||+||+++|..++.+++.++++.+.....
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 4667777777766655422 23332 2234899999999999999999999999999999887633211
Q ss_pred ------------------HHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc
Q 011374 290 ------------------LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL 351 (487)
Q Consensus 290 ------------------l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl 351 (487)
+.+.+. ....+||+|||||.+- ....+.||+.+|.-
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~-~~p~~VvllDEieka~-------------------------~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKAH-------------------------PDIYNILLQVMDYA 580 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHH-hCCCeEEEEechhhcC-------------------------HHHHHHHHHhhccC
Confidence 222222 2346899999999662 34667788888753
Q ss_pred cc--CCC-----CceEEEEecCCCC-------------------------CCCccccCCCceeeEEEeCCCCHHHHHHHH
Q 011374 352 WS--SCG-----DERIIIFTTNHKD-------------------------RLDPALLRPGRMDVHIHMSYCTPCGFKMLA 399 (487)
Q Consensus 352 ~s--~~~-----~~~iiI~TTN~~~-------------------------~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~ 399 (487)
.- ..| .+.+||+|||... .+.|.|+. |||..|.|.+.+.++..+|+
T Consensus 581 ~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv 658 (731)
T TIGR02639 581 TLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIV 658 (731)
T ss_pred eeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHH
Confidence 21 111 3468999998631 14566665 99999999999999999999
Q ss_pred HHhhC
Q 011374 400 SNYLG 404 (487)
Q Consensus 400 ~~~l~ 404 (487)
+..+.
T Consensus 659 ~~~L~ 663 (731)
T TIGR02639 659 QKFVD 663 (731)
T ss_pred HHHHH
Confidence 98875
No 125
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.43 E-value=7.6e-12 Score=134.17 Aligned_cols=175 Identities=20% Similarity=0.262 Sum_probs=122.5
Q ss_pred CceecccCCCCCccccccCHHHHHHHHHHHHHHHh---c--------------HHHHH----HhcCCCcccceeeCCCCC
Q 011374 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLK---R--------------KEFYK----RVGKAWKRGYLLYGPPGT 259 (487)
Q Consensus 201 ~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~---~--------------~~~y~----~~g~~~~rg~LL~GPPGt 259 (487)
.|.. ...|..|.+|.+++.+-+.++.+|..|-- + ++.+. ..+.|.++-+||+||||-
T Consensus 260 LWVd--ky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 260 LWVD--KYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred eeec--ccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 5644 67899999999999999999999987621 1 01111 134577788999999999
Q ss_pred cHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHHHHc----------cCCeEEEEeccchhhhhhhHHHhhhcccchhh
Q 011374 260 GKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIAT----------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLY 329 (487)
Q Consensus 260 GKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~~----------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~ 329 (487)
||||||+.+|.+.||.+++++.++-.+...+++.+..+ .+|.+|||||||....
T Consensus 338 GKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~---------------- 401 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR---------------- 401 (877)
T ss_pred ChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcH----------------
Confidence 99999999999999999999999988877777666443 4689999999995531
Q ss_pred hhcccCCchhhHhhHHHHhh--ccccCC---------------CCceEEEEecCCCCCCCcccc--CCCceeeEEEeCCC
Q 011374 330 RSACNQGNRVTLSGLLNFID--GLWSSC---------------GDERIIIFTTNHKDRLDPALL--RPGRMDVHIHMSYC 390 (487)
Q Consensus 330 ~~~~~~~~~~~ls~LL~~lD--gl~s~~---------------~~~~iiI~TTN~~~~LD~ALl--RpGRfd~~I~~~~p 390 (487)
..+..+|..+. +..... .=.|-||+.+|. ..-|||. | -+...|+|..|
T Consensus 402 ---------~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr--~~A~ii~f~~p 468 (877)
T KOG1969|consen 402 ---------AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLR--PFAEIIAFVPP 468 (877)
T ss_pred ---------HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcc--cceEEEEecCC
Confidence 11222222221 100000 012578899985 3457774 5 57788999999
Q ss_pred CHHHHHHHHHHhhCcC
Q 011374 391 TPCGFKMLASNYLGIT 406 (487)
Q Consensus 391 ~~~~~~~l~~~~l~~~ 406 (487)
....+.+-++-.+..+
T Consensus 469 ~~s~Lv~RL~~IC~rE 484 (877)
T KOG1969|consen 469 SQSRLVERLNEICHRE 484 (877)
T ss_pred ChhHHHHHHHHHHhhh
Confidence 9887665555555444
No 126
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=5.3e-12 Score=136.48 Aligned_cols=157 Identities=16% Similarity=0.200 Sum_probs=108.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc-----CCcEEEeecCcccC-------hHHHHHHHHHccCCeEEEEeccchhhhhhh
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELSSVEG-------NKDLRQILIATENKSILVVEDIDCCLEMQD 316 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l-----~~~v~~l~~~~~~~-------~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~ 316 (487)
..++|||++|||||+|++|||+++ ++.++.+++..+.. ...+..+.....+..+|+||||+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gk-- 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDK-- 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCC--
Confidence 458999999999999999999987 46777777655421 1111122223345789999999987431
Q ss_pred HHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCC----CCCCccccCCCce--eeEEEeCCC
Q 011374 317 RLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHK----DRLDPALLRPGRM--DVHIHMSYC 390 (487)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~----~~LD~ALlRpGRf--d~~I~~~~p 390 (487)
..+...|++.++.+... +.-||+|+|.+ ..+++.|.+ || ...+++..|
T Consensus 393 ---------------------e~tqeeLF~l~N~l~e~---gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~P 446 (617)
T PRK14086 393 ---------------------ESTQEEFFHTFNTLHNA---NKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPP 446 (617)
T ss_pred ---------------------HHHHHHHHHHHHHHHhc---CCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCC
Confidence 12234455566555432 23355577754 357889988 77 677899999
Q ss_pred CHHHHHHHHHHhhCcCCCCchHHHHHHHh-hcCCCHHHHHHHHh
Q 011374 391 TPCGFKMLASNYLGITEHPLFLEVEELIE-KVEVTPADVAEQLM 433 (487)
Q Consensus 391 ~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~i~~~l~ 433 (487)
+.+.+..|++..+......+.+++.+++. ...-+..++...|.
T Consensus 447 D~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 447 ELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999999999888777777777766654 45567777776664
No 127
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.41 E-value=2.2e-12 Score=137.01 Aligned_cols=161 Identities=19% Similarity=0.309 Sum_probs=127.5
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCc------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD------------ 275 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~------------ 275 (487)
.+|.+|++++|++.+.+.|...+.. .....+|||.||-||||||+|+.+|..+++.
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 3688999999999998888776651 1234589999999999999999999998543
Q ss_pred ------------EEEeecCcccChHHHHHHHHHcc------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCc
Q 011374 276 ------------VYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (487)
Q Consensus 276 ------------v~~l~~~~~~~~~~l~~l~~~~~------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (487)
++.+|..+-.+-+++|++..... +.-|.+|||+|.+-
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------------------- 132 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------------------- 132 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-------------------------
Confidence 34445444456788888887763 35799999999772
Q ss_pred hhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchH
Q 011374 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFL 412 (487)
Q Consensus 338 ~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~ 412 (487)
...++.||..++. ++..+++|++|..++++++.+++ |. .+..|...+.++....+...+..++....+
T Consensus 133 ~~afNALLKTLEE----PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~ 200 (515)
T COG2812 133 KQAFNALLKTLEE----PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEE 200 (515)
T ss_pred HHHHHHHhccccc----CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCH
Confidence 5667888888875 45679999999999999999998 76 568899999999999999888766554443
No 128
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.40 E-value=4.9e-12 Score=126.22 Aligned_cols=148 Identities=22% Similarity=0.313 Sum_probs=99.8
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCc---EEEeecCccc
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLELSSVE 285 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~---v~~l~~~~~~ 285 (487)
.|.++++.+|++++--+ -..|...+. ..--.+++||||||||||+||+.||+...-+ ++.++.+.-
T Consensus 133 RPktL~dyvGQ~hlv~q-~gllrs~ie---------q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a- 201 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQ-DGLLRSLIE---------QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA- 201 (554)
T ss_pred CcchHHHhcchhhhcCc-chHHHHHHH---------cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-
Confidence 47889998888765332 111111111 1112468999999999999999999988766 555554443
Q ss_pred ChHHHHHHHHHc-------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCc
Q 011374 286 GNKDLRQILIAT-------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDE 358 (487)
Q Consensus 286 ~~~~l~~l~~~~-------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~ 358 (487)
...+++.+|.++ .++.|||||||+.+- +.....||-.++. +.
T Consensus 202 ~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN-------------------------ksQQD~fLP~VE~------G~ 250 (554)
T KOG2028|consen 202 KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN-------------------------KSQQDTFLPHVEN------GD 250 (554)
T ss_pred chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh-------------------------hhhhhcccceecc------Cc
Confidence 457888888765 468999999999762 2223335554432 34
Q ss_pred eEEEE-ec-CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011374 359 RIIIF-TT-NHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASN 401 (487)
Q Consensus 359 ~iiI~-TT-N~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~ 401 (487)
+++|+ || |..-.|..||+. |. .++.+...+.+....|+.+
T Consensus 251 I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 251 ITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred eEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHH
Confidence 66666 44 445689999998 55 3477788888888888876
No 129
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=3.4e-11 Score=124.55 Aligned_cols=152 Identities=19% Similarity=0.273 Sum_probs=112.1
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 274 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------- 274 (487)
.+|++|++|+|.++.++.+.+.+.. ...+..+||+||+|+||+++|.++|+.+-+
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 6899999999999999888765541 234568999999999999999999998832
Q ss_pred ---------------------cEEEeecC--c-------ccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHH
Q 011374 275 ---------------------DVYDLELS--S-------VEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRL 318 (487)
Q Consensus 275 ---------------------~v~~l~~~--~-------~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~ 318 (487)
+++.+... . .-.-+.++++.... ..+.|++|||+|.+
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------- 153 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------- 153 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-------
Confidence 12222210 0 01124455555433 24679999999866
Q ss_pred HhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHH
Q 011374 319 AKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKML 398 (487)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l 398 (487)
+....+.||..++.. +...++|++|+.++.+.|.+.+ |+ .++.|+.++.++...+
T Consensus 154 ------------------~~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~ 208 (365)
T PRK07471 154 ------------------NANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDA 208 (365)
T ss_pred ------------------CHHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHH
Confidence 245567788888853 3457888899999999999887 76 5799999999999888
Q ss_pred HHHhh
Q 011374 399 ASNYL 403 (487)
Q Consensus 399 ~~~~l 403 (487)
+....
T Consensus 209 L~~~~ 213 (365)
T PRK07471 209 LAAAG 213 (365)
T ss_pred HHHhc
Confidence 87754
No 130
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2e-11 Score=126.17 Aligned_cols=208 Identities=18% Similarity=0.185 Sum_probs=144.2
Q ss_pred cccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCc-----EEEeecCcccChHHH
Q 011374 216 LAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD-----VYDLELSSVEGNKDL 290 (487)
Q Consensus 216 l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~-----v~~l~~~~~~~~~~l 290 (487)
+.+-+++.+++...+..++.+ ..|.++++|||||||||..++.++.++.-. ++.+||....+...+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 777788888888887766654 224469999999999999999999999544 788888877433222
Q ss_pred -HHHHH------------------------HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHH
Q 011374 291 -RQILI------------------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLL 345 (487)
Q Consensus 291 -~~l~~------------------------~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 345 (487)
.+++. ......||++||+|.+.. .. ..++-.|+
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~---------------------~~-~~~LY~L~ 147 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD---------------------KD-GEVLYSLL 147 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc---------------------cc-chHHHHHH
Confidence 22222 223457999999999864 11 14455555
Q ss_pred HHhhccccCCCCceEEEEecCCC---CCCCccccCCCce-eeEEEeCCCCHHHHHHHHHHhhCc--CCCCchHHHHHHHh
Q 011374 346 NFIDGLWSSCGDERIIIFTTNHK---DRLDPALLRPGRM-DVHIHMSYCTPCGFKMLASNYLGI--TEHPLFLEVEELIE 419 (487)
Q Consensus 346 ~~lDgl~s~~~~~~iiI~TTN~~---~~LD~ALlRpGRf-d~~I~~~~p~~~~~~~l~~~~l~~--~~~~l~~~i~~l~~ 419 (487)
...+.. ...+++|+.+|.. +.+||.+.+ ++ ..+|.||+.+.+|+..|+...... ....+.+.+-+++.
T Consensus 148 r~~~~~----~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia 221 (366)
T COG1474 148 RAPGEN----KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIA 221 (366)
T ss_pred hhcccc----ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHH
Confidence 544433 2347888888865 578898875 43 456999999999999999887652 34444445544443
Q ss_pred hcCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhccccccchHHHHHh
Q 011374 420 KVEVTPADVAEQLMRDEVPKIALSGLIQFLQIKKRETGESKATEAEETAR 469 (487)
Q Consensus 420 ~~~~spa~i~~~l~~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~ 469 (487)
. -....++|+..|++-+..+.+.+..............++.
T Consensus 222 ~---------~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~ 262 (366)
T COG1474 222 A---------LVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQ 262 (366)
T ss_pred H---------HHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Confidence 1 1112346999999999999999988877777776666664
No 131
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.38 E-value=9.5e-12 Score=136.88 Aligned_cols=170 Identities=19% Similarity=0.312 Sum_probs=108.2
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----------CCcEE
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVY 277 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----------~~~v~ 277 (487)
..|.+|++++|.....+.++..+. .+.+..++|+||||||||++|+++++.. +.+++
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 358899999999888777655432 1335679999999999999999998766 34678
Q ss_pred EeecCcccC-hHHHH----------------HHHHH------------ccCCeEEEEeccchhhhhhhHHHhhhcccchh
Q 011374 278 DLELSSVEG-NKDLR----------------QILIA------------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDL 328 (487)
Q Consensus 278 ~l~~~~~~~-~~~l~----------------~l~~~------------~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~ 328 (487)
.+++..+.. ...+. ..+.. .....||||||++.+-..
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-------------- 280 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-------------- 280 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--------------
Confidence 888766521 11110 11111 123579999999977321
Q ss_pred hhhcccCCchhhHhhHHHHhhcc--------c----------------cCCCCceEEEE-ecCCCCCCCccccCCCceee
Q 011374 329 YRSACNQGNRVTLSGLLNFIDGL--------W----------------SSCGDERIIIF-TTNHKDRLDPALLRPGRMDV 383 (487)
Q Consensus 329 ~~~~~~~~~~~~ls~LL~~lDgl--------~----------------s~~~~~~iiI~-TTN~~~~LD~ALlRpGRfd~ 383 (487)
....|+..++.- + ...+..+++|+ ||+.++.++++|.+ ||.
T Consensus 281 -----------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~- 346 (615)
T TIGR02903 281 -----------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA- 346 (615)
T ss_pred -----------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-
Confidence 122233333210 0 01112344444 66778899999988 986
Q ss_pred EEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHH
Q 011374 384 HIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELI 418 (487)
Q Consensus 384 ~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~ 418 (487)
.++|+.++.+++..|+++++......+.+++.+++
T Consensus 347 ~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L 381 (615)
T TIGR02903 347 EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELI 381 (615)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 57899999999999999987643333333333333
No 132
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.38 E-value=2.9e-12 Score=129.20 Aligned_cols=130 Identities=19% Similarity=0.227 Sum_probs=92.4
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHH------------------HH-HHccCCeEEEEec
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQ------------------IL-IATENKSILVVED 307 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~------------------l~-~~~~~~sIl~IDe 307 (487)
.++.+||.||||||||++++.+|..++.+++.++++......++.. .+ .....+.+|++||
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDE 142 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDE 142 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEech
Confidence 3578999999999999999999999999999998776522211110 01 1124578899999
Q ss_pred cchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhc--ccc--------CCCCceEEEEecCCCC--------
Q 011374 308 IDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDG--LWS--------SCGDERIIIFTTNHKD-------- 369 (487)
Q Consensus 308 iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg--l~s--------~~~~~~iiI~TTN~~~-------- 369 (487)
||..- ..+++.|...+|. ... .+.....+|+|+|..+
T Consensus 143 in~a~-------------------------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y 197 (327)
T TIGR01650 143 YDAGR-------------------------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLY 197 (327)
T ss_pred hhccC-------------------------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcce
Confidence 99662 2344554444441 100 1112456899999754
Q ss_pred ----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011374 370 ----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYL 403 (487)
Q Consensus 370 ----~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l 403 (487)
.|++|++. ||-+.+.++||+.+.-.+|+....
T Consensus 198 ~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 198 HGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred eeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 46899999 998889999999999999887654
No 133
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=5.7e-12 Score=133.63 Aligned_cols=190 Identities=16% Similarity=0.252 Sum_probs=116.8
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-----CCcEEEeec
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLEL 281 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-----~~~v~~l~~ 281 (487)
+.+..|||+.+..+.-+. ....+..+...+ | +..+++||||||||||+|++|+|+++ +..++.++.
T Consensus 98 l~~~~tFdnFv~g~~n~~-a~~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSF-AYHAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCCCCcccccccCCchHH-HHHHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 344568999874433322 223333333221 2 23469999999999999999999987 356677765
Q ss_pred CcccC-------hHHHHHHHHHc-cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcccc
Q 011374 282 SSVEG-------NKDLRQILIAT-ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWS 353 (487)
Q Consensus 282 ~~~~~-------~~~l~~l~~~~-~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s 353 (487)
..+.. ...+..+.... .++.+|+|||++.+.+. ..+...|+..++.+..
T Consensus 169 ~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~-----------------------~~~q~elf~~~n~l~~ 225 (440)
T PRK14088 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK-----------------------TGVQTELFHTFNELHD 225 (440)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc-----------------------HHHHHHHHHHHHHHHH
Confidence 54310 01111222222 25789999999987531 1122335555555543
Q ss_pred CCCCceEEEEec-CCCCC---CCccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHh-hcCCCHH
Q 011374 354 SCGDERIIIFTT-NHKDR---LDPALLRPGRM--DVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE-KVEVTPA 426 (487)
Q Consensus 354 ~~~~~~iiI~TT-N~~~~---LD~ALlRpGRf--d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa 426 (487)
. + ..+|+|| +.|.. +++.+.+ || ...+.+..|+.+.+..|++..+...+..+.+++..++. ...-+..
T Consensus 226 ~--~-k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 226 S--G-KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLR 300 (440)
T ss_pred c--C-CeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHH
Confidence 2 1 2455555 55554 5677877 66 56789999999999999999887666677666655554 4456666
Q ss_pred HHHHHHh
Q 011374 427 DVAEQLM 433 (487)
Q Consensus 427 ~i~~~l~ 433 (487)
++...+.
T Consensus 301 ~L~g~l~ 307 (440)
T PRK14088 301 RLRGAII 307 (440)
T ss_pred HHHHHHH
Confidence 6666654
No 134
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=3.5e-11 Score=123.81 Aligned_cols=180 Identities=16% Similarity=0.167 Sum_probs=118.9
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCc------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD------------ 275 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~------------ 275 (487)
.||+.|+.|+|..++++.+...+. ....+..+||+||+|+|||++|.++|..+...
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~------------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR------------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH------------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 699999999999999888876554 11234579999999999999999999998551
Q ss_pred ------------------EEEeecC---------cccChHHHHHHHHH---c---cCCeEEEEeccchhhhhhhHHHhhh
Q 011374 276 ------------------VYDLELS---------SVEGNKDLRQILIA---T---ENKSILVVEDIDCCLEMQDRLAKAK 322 (487)
Q Consensus 276 ------------------v~~l~~~---------~~~~~~~l~~l~~~---~---~~~sIl~IDeiD~~~~~~~~~~~~~ 322 (487)
++.+... ..-+.+.++++... . ...-|++|||+|.+-
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~---------- 154 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN---------- 154 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC----------
Confidence 1111100 00012344443322 2 235699999999772
Q ss_pred cccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011374 323 AAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNY 402 (487)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~ 402 (487)
....+.||..++.. +...++|+.|+.++.+.|.+.+ |+ .++.|+.++.++...++...
T Consensus 155 ---------------~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 155 ---------------RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred ---------------HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHh
Confidence 34456788888863 2346777778889999999987 87 58999999999999988874
Q ss_pred hCcCCCCchHHHHHHHhhcCCCHHHHHHHH
Q 011374 403 LGITEHPLFLEVEELIEKVEVTPADVAEQL 432 (487)
Q Consensus 403 l~~~~~~l~~~i~~l~~~~~~spa~i~~~l 432 (487)
..... ...+.+..++...+-+|....+.+
T Consensus 213 ~~~~~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 213 GSSQG-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred hcccC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 32111 112223344444445555444433
No 135
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=6.1e-11 Score=120.47 Aligned_cols=148 Identities=16% Similarity=0.221 Sum_probs=109.7
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC--------cEEEeecC-
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF--------DVYDLELS- 282 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~--------~v~~l~~~- 282 (487)
+|++++|++.+++.+...+. ....+..||||||+|+|||++|+++|..+.+ +++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~------------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII------------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH------------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 68999999999888877653 2344568999999999999999999998733 34344331
Q ss_pred -cccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCC
Q 011374 283 -SVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSC 355 (487)
Q Consensus 283 -~~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~ 355 (487)
..-+.+.++++.... ...-|++||++|.+- ....+.||..++.-
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-------------------------~~a~naLLK~LEep---- 120 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-------------------------EQAQNAFLKTIEEP---- 120 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-------------------------HHHHHHHHHHhcCC----
Confidence 112345677766533 245799999998762 33456789888853
Q ss_pred CCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011374 356 GDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYL 403 (487)
Q Consensus 356 ~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l 403 (487)
+.+.++|++|+.++.|-|.+.+ |. .+++|+.++.++....+...+
T Consensus 121 p~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 121 PKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred CCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 4557888888889999999988 66 579999999999887776544
No 136
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.37 E-value=1.3e-11 Score=125.92 Aligned_cols=156 Identities=20% Similarity=0.250 Sum_probs=103.5
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC-------CcE--EEe
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-------FDV--YDL 279 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~-------~~v--~~l 279 (487)
.|-+|+.++|++++|+.+.-.+.. +-..++||+||||||||++|+++|+.+. .++ ..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 467899999999998877643210 1125799999999999999999999982 211 100
Q ss_pred ----ec--------------------C----cccChHHHHHHHHH-----------ccCCeEEEEeccchhhhhhhHHHh
Q 011374 280 ----EL--------------------S----SVEGNKDLRQILIA-----------TENKSILVVEDIDCCLEMQDRLAK 320 (487)
Q Consensus 280 ----~~--------------------~----~~~~~~~l~~l~~~-----------~~~~sIl~IDeiD~~~~~~~~~~~ 320 (487)
++ + .+-+.-++...+.. .....+|++|||+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl--------- 140 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL--------- 140 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------
Confidence 00 0 00111111222110 123469999999866
Q ss_pred hhcccchhhhhcccCCchhhHhhHHHHhhcc---------ccCCCCceEEEEecCCCC-CCCccccCCCceeeEEEeCCC
Q 011374 321 AKAAIPDLYRSACNQGNRVTLSGLLNFIDGL---------WSSCGDERIIIFTTNHKD-RLDPALLRPGRMDVHIHMSYC 390 (487)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl---------~s~~~~~~iiI~TTN~~~-~LD~ALlRpGRfd~~I~~~~p 390 (487)
...+++.|++.|+.- ....+...++|+|+|..+ .++++|+. ||.++|.+++|
T Consensus 141 ----------------~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~ 202 (334)
T PRK13407 141 ----------------EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSP 202 (334)
T ss_pred ----------------CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCC
Confidence 245677788877532 112233467888888654 68999999 99999999999
Q ss_pred CH-HHHHHHHHHhhC
Q 011374 391 TP-CGFKMLASNYLG 404 (487)
Q Consensus 391 ~~-~~~~~l~~~~l~ 404 (487)
.. +++.+++.+...
T Consensus 203 ~~~~e~~~il~~~~~ 217 (334)
T PRK13407 203 RDVETRVEVIRRRDA 217 (334)
T ss_pred CcHHHHHHHHHHhhc
Confidence 87 888888887543
No 137
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.37 E-value=8.5e-12 Score=109.71 Aligned_cols=116 Identities=29% Similarity=0.389 Sum_probs=80.8
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChHHHHH-----------HHHHccCCeEEEEeccchhh
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDLRQ-----------ILIATENKSILVVEDIDCCL 312 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~~l~~-----------l~~~~~~~sIl~IDeiD~~~ 312 (487)
..++++++||||||||++++.+++.+ +.+++.+++........... .......+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45689999999999999999999999 89999998877643322221 12223568999999999762
Q ss_pred hhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccC--CCCceEEEEecCCCC--CCCccccCCCceeeEEEeC
Q 011374 313 EMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSS--CGDERIIIFTTNHKD--RLDPALLRPGRMDVHIHMS 388 (487)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~--~~~~~iiI~TTN~~~--~LD~ALlRpGRfd~~I~~~ 388 (487)
. .....++..+...... ...+..+|++||... .+++.+.. |++.++.++
T Consensus 98 ~-------------------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 R-------------------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred H-------------------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1 1123344444443221 123578888888877 77888887 999888886
Q ss_pred C
Q 011374 389 Y 389 (487)
Q Consensus 389 ~ 389 (487)
+
T Consensus 151 ~ 151 (151)
T cd00009 151 L 151 (151)
T ss_pred C
Confidence 3
No 138
>PRK05642 DNA replication initiation factor; Validated
Probab=99.37 E-value=9.4e-12 Score=121.30 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=99.2
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCc
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~ 283 (487)
..+..+||+.+... ....+..+..+.... +....+.++||||+|||||+|++|+|+++ +..++.++..+
T Consensus 12 ~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 12 LRDDATFANYYPGA--NAAALGYVERLCEAD------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred CCCcccccccCcCC--hHHHHHHHHHHhhcc------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 34456899987332 233444444332211 11123678999999999999999999875 56677777665
Q ss_pred ccChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEE
Q 011374 284 VEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIF 363 (487)
Q Consensus 284 ~~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~ 363 (487)
+... ...++....+-.+|+|||++.+.+. ......|++.++.+... +..+|+.
T Consensus 84 ~~~~--~~~~~~~~~~~d~LiiDDi~~~~~~-----------------------~~~~~~Lf~l~n~~~~~--g~~ilit 136 (234)
T PRK05642 84 LLDR--GPELLDNLEQYELVCLDDLDVIAGK-----------------------ADWEEALFHLFNRLRDS--GRRLLLA 136 (234)
T ss_pred HHhh--hHHHHHhhhhCCEEEEechhhhcCC-----------------------hHHHHHHHHHHHHHHhc--CCEEEEe
Confidence 4321 1233333344468999999976321 12223455555554332 2345444
Q ss_pred ecCCCCC---CCccccCCCce--eeEEEeCCCCHHHHHHHHHHhhC
Q 011374 364 TTNHKDR---LDPALLRPGRM--DVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 364 TTN~~~~---LD~ALlRpGRf--d~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
++..|.. +.|.|.+ || ...+.+..|+.+++..+++....
T Consensus 137 s~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 137 ASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred CCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 4445543 3688988 77 57788999999999999986443
No 139
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.36 E-value=9.4e-12 Score=131.87 Aligned_cols=156 Identities=16% Similarity=0.267 Sum_probs=102.0
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccC-------hHHHHHHHHHccCCeEEEEeccchhhhhhhHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG-------NKDLRQILIATENKSILVVEDIDCCLEMQDRL 318 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~-------~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~ 318 (487)
.+++||||||+|||+|++|+|+++ +..++.++...+.. ......+-....+..+|+||||+.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k---- 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGK---- 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCC----
Confidence 578999999999999999999987 57777776544311 0111111112345679999999976321
Q ss_pred HhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCC-C---CCCCccccCCCcee--eEEEeCCCCH
Q 011374 319 AKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNH-K---DRLDPALLRPGRMD--VHIHMSYCTP 392 (487)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~-~---~~LD~ALlRpGRfd--~~I~~~~p~~ 392 (487)
..+...|+..++.+... +..+|+|+|. | ..++++|.+ ||. ..+.++.|+.
T Consensus 218 -------------------~~~qeelf~l~N~l~~~---~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~ 273 (445)
T PRK12422 218 -------------------GATQEEFFHTFNSLHTE---GKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTK 273 (445)
T ss_pred -------------------hhhHHHHHHHHHHHHHC---CCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCH
Confidence 12223344444443322 2456666665 4 356889998 884 8899999999
Q ss_pred HHHHHHHHHhhCcCCCCchHHHHHH-HhhcCCCHHHHHHHH
Q 011374 393 CGFKMLASNYLGITEHPLFLEVEEL-IEKVEVTPADVAEQL 432 (487)
Q Consensus 393 ~~~~~l~~~~l~~~~~~l~~~i~~l-~~~~~~spa~i~~~l 432 (487)
+.+..+++..+...+..+.+++..+ +....-+..++.+.+
T Consensus 274 e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l 314 (445)
T PRK12422 274 EGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHAL 314 (445)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999998877666666666654 344444554544444
No 140
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.35 E-value=1e-12 Score=117.17 Aligned_cols=105 Identities=34% Similarity=0.443 Sum_probs=74.4
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHHH---------------HccCCeEEEEeccchhhhh
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILI---------------ATENKSILVVEDIDCCLEM 314 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~~---------------~~~~~sIl~IDeiD~~~~~ 314 (487)
++||+||||||||+||+.+|..++.+++.+.++...+..+|..... ....++|+|||||+..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~-- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAP-- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCC--
Confidence 4799999999999999999999999999999988765555532221 11257899999999652
Q ss_pred hhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcccc----------CCCC-----ceEEEEecCCCC----CCCccc
Q 011374 315 QDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWS----------SCGD-----ERIIIFTTNHKD----RLDPAL 375 (487)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s----------~~~~-----~~iiI~TTN~~~----~LD~AL 375 (487)
..++..|++.+|+-.- .... +..||+|+|..+ .+++||
T Consensus 79 -----------------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al 135 (139)
T PF07728_consen 79 -----------------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPAL 135 (139)
T ss_dssp -----------------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHH
T ss_pred -----------------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHH
Confidence 3455556666653210 1111 378999999988 899999
Q ss_pred cCCCce
Q 011374 376 LRPGRM 381 (487)
Q Consensus 376 lRpGRf 381 (487)
++ ||
T Consensus 136 ~~--Rf 139 (139)
T PF07728_consen 136 LD--RF 139 (139)
T ss_dssp HT--T-
T ss_pred Hh--hC
Confidence 99 87
No 141
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.34 E-value=1.7e-11 Score=125.36 Aligned_cols=131 Identities=24% Similarity=0.242 Sum_probs=93.8
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHHHH------------ccC---C---eEEEEecc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIA------------TEN---K---SILVVEDI 308 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~------------~~~---~---sIl~IDei 308 (487)
..+.+||-||||||||+||+++|..++.+++.+.++.-...+++.-...- .+. . +|+++|||
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEI 121 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEI 121 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecc
Confidence 35789999999999999999999999999999999876444443211110 011 1 39999999
Q ss_pred chhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc-------c-cCCCCceEEEEecC-----CCCCCCccc
Q 011374 309 DCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL-------W-SSCGDERIIIFTTN-----HKDRLDPAL 375 (487)
Q Consensus 309 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl-------~-s~~~~~~iiI~TTN-----~~~~LD~AL 375 (487)
+.. ...+.+.||..|+.- . -.-....++|+|+| ....|++|+
T Consensus 122 nra-------------------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ 176 (329)
T COG0714 122 NRA-------------------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEAL 176 (329)
T ss_pred ccC-------------------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHH
Confidence 844 367788888888752 1 11224467888889 445689999
Q ss_pred cCCCceeeEEEeCCC-CHHHHHHHHHHhhC
Q 011374 376 LRPGRMDVHIHMSYC-TPCGFKMLASNYLG 404 (487)
Q Consensus 376 lRpGRfd~~I~~~~p-~~~~~~~l~~~~l~ 404 (487)
++ ||-..++++|| ..++...+......
T Consensus 177 ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 177 LD--RFLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred Hh--hEEEEEecCCCCchHHHHHHHHhCcc
Confidence 99 99999999999 44445555544443
No 142
>PHA02244 ATPase-like protein
Probab=99.32 E-value=1.9e-11 Score=124.66 Aligned_cols=119 Identities=19% Similarity=0.302 Sum_probs=81.3
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCc----c----cChHHHH--HHHHHccCCeEEEEeccchhhhhhhH
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS----V----EGNKDLR--QILIATENKSILVVEDIDCCLEMQDR 317 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~----~----~~~~~l~--~l~~~~~~~sIl~IDeiD~~~~~~~~ 317 (487)
+..+||+||||||||++|++||..++.+++.++... + .....+. .++.......+|+||||+.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~----- 193 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASI----- 193 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCC-----
Confidence 457999999999999999999999999999886321 0 0011111 333445678999999999663
Q ss_pred HHhhhcccchhhhhcccCCchhhHhhHHHHhh--------ccccCCCCceEEEEecCCC-----------CCCCccccCC
Q 011374 318 LAKAKAAIPDLYRSACNQGNRVTLSGLLNFID--------GLWSSCGDERIIIFTTNHK-----------DRLDPALLRP 378 (487)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD--------gl~s~~~~~~iiI~TTN~~-----------~~LD~ALlRp 378 (487)
..++..|...++ +... ...+.-+|+|+|.+ ..|++|++.
T Consensus 194 --------------------p~vq~~L~~lLd~r~l~l~g~~i~-~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD- 251 (383)
T PHA02244 194 --------------------PEALIIINSAIANKFFDFADERVT-AHEDFRVISAGNTLGKGADHIYVARNKIDGATLD- 251 (383)
T ss_pred --------------------HHHHHHHHHHhccCeEEecCcEEe-cCCCEEEEEeeCCCccCcccccCCCcccCHHHHh-
Confidence 223333444443 2211 12346789999973 578999999
Q ss_pred CceeeEEEeCCCCHHHH
Q 011374 379 GRMDVHIHMSYCTPCGF 395 (487)
Q Consensus 379 GRfd~~I~~~~p~~~~~ 395 (487)
|| .+|+|+||+..+.
T Consensus 252 -RF-v~I~~dyp~~~E~ 266 (383)
T PHA02244 252 -RF-APIEFDYDEKIEH 266 (383)
T ss_pred -hc-EEeeCCCCcHHHH
Confidence 99 5799999984433
No 143
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.32 E-value=2e-11 Score=117.87 Aligned_cols=156 Identities=19% Similarity=0.258 Sum_probs=97.7
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc-----CCcEEEeecCcccC-------hHHHHHHHHHccCCeEEEEeccchhhhhhhH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELSSVEG-------NKDLRQILIATENKSILVVEDIDCCLEMQDR 317 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l-----~~~v~~l~~~~~~~-------~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~ 317 (487)
.++||||+|+|||+|.+|+++++ +..++.++...+.. ...+..+......--+|+||||+.+.+.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~--- 112 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGK--- 112 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTH---
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCc---
Confidence 48999999999999999999986 45677776655411 1223344455567789999999987431
Q ss_pred HHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCC---CccccCCCce--eeEEEeCCCCH
Q 011374 318 LAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRL---DPALLRPGRM--DVHIHMSYCTP 392 (487)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~L---D~ALlRpGRf--d~~I~~~~p~~ 392 (487)
..+...|...++.+... +..+|+.+...|..| +|.|.. || ...+.+..|+.
T Consensus 113 --------------------~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~ 168 (219)
T PF00308_consen 113 --------------------QRTQEELFHLFNRLIES--GKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDD 168 (219)
T ss_dssp --------------------HHHHHHHHHHHHHHHHT--TSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----H
T ss_pred --------------------hHHHHHHHHHHHHHHhh--CCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCH
Confidence 23445566666655443 235555555566654 677776 65 45899999999
Q ss_pred HHHHHHHHHhhCcCCCCchHHHHHHHh-hcCCCHHHHHHHH
Q 011374 393 CGFKMLASNYLGITEHPLFLEVEELIE-KVEVTPADVAEQL 432 (487)
Q Consensus 393 ~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~i~~~l 432 (487)
+.+..+++......+..+.+++..++. ...-+..++...+
T Consensus 169 ~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 169 EDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHH
Confidence 999999999888777777776665544 3344555544433
No 144
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.31 E-value=3.9e-11 Score=136.69 Aligned_cols=157 Identities=16% Similarity=0.295 Sum_probs=109.9
Q ss_pred ccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCC---Cc-ccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCccc
Q 011374 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA---WK-RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE 285 (487)
Q Consensus 213 fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~---~~-rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~ 285 (487)
++.|+|++...+.|...+..... |.. .| ..+||+||||||||++|++||+.+ +.+++.++++.+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~--------gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRA--------GLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHh--------cccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 56788988888888777764321 221 11 358999999999999999999988 4568888887764
Q ss_pred ChHHHHHHH---------------HH---ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHH
Q 011374 286 GNKDLRQIL---------------IA---TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNF 347 (487)
Q Consensus 286 ~~~~l~~l~---------------~~---~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 347 (487)
.......++ .. ....+||+||||+.+ .....+.|++.
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-------------------------~~~v~~~Ll~i 693 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-------------------------HPDVFNILLQV 693 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-------------------------CHHHHHHHHHH
Confidence 332232222 11 123489999999865 23456778888
Q ss_pred hhccc--cCC-----CCceEEEEecCCC-------------------------CCCCccccCCCceeeEEEeCCCCHHHH
Q 011374 348 IDGLW--SSC-----GDERIIIFTTNHK-------------------------DRLDPALLRPGRMDVHIHMSYCTPCGF 395 (487)
Q Consensus 348 lDgl~--s~~-----~~~~iiI~TTN~~-------------------------~~LD~ALlRpGRfd~~I~~~~p~~~~~ 395 (487)
+|.-. ... -.+.+||+|||.. ..+.|+|+. |+|..+.|.+++.+..
T Consensus 694 le~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl 771 (857)
T PRK10865 694 LDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHI 771 (857)
T ss_pred HhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHH
Confidence 86321 111 1235899999973 124577887 9999999999999999
Q ss_pred HHHHHHhhC
Q 011374 396 KMLASNYLG 404 (487)
Q Consensus 396 ~~l~~~~l~ 404 (487)
..|++.++.
T Consensus 772 ~~Iv~~~L~ 780 (857)
T PRK10865 772 ASIAQIQLQ 780 (857)
T ss_pred HHHHHHHHH
Confidence 999998885
No 145
>PRK06620 hypothetical protein; Validated
Probab=99.31 E-value=4.2e-11 Score=115.10 Aligned_cols=158 Identities=18% Similarity=0.235 Sum_probs=96.1
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCC-cccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccCh
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAW-KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGN 287 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~-~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~ 287 (487)
++-+||+++..+.-.. ....+..+.. .++..+ .+.++||||||||||+|++++|+..+..++. .... .
T Consensus 11 ~~~tfd~Fvvg~~N~~-a~~~~~~~~~------~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~--~ 79 (214)
T PRK06620 11 SKYHPDEFIVSSSNDQ-AYNIIKNWQC------GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF--N 79 (214)
T ss_pred CCCCchhhEecccHHH-HHHHHHHHHH------ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh--c
Confidence 3448999876543222 3344443322 122222 3679999999999999999999988763322 1111 1
Q ss_pred HHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCC
Q 011374 288 KDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNH 367 (487)
Q Consensus 288 ~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~ 367 (487)
. .. .....+|+|||||.+- ...+-.++|.+.. . +..++|.++..
T Consensus 80 ~---~~---~~~~d~lliDdi~~~~-------------------------~~~lf~l~N~~~e---~--g~~ilits~~~ 123 (214)
T PRK06620 80 E---EI---LEKYNAFIIEDIENWQ-------------------------EPALLHIFNIINE---K--QKYLLLTSSDK 123 (214)
T ss_pred h---hH---HhcCCEEEEeccccch-------------------------HHHHHHHHHHHHh---c--CCEEEEEcCCC
Confidence 1 11 1245799999999431 1233344444432 2 23566666655
Q ss_pred CCC--CCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHH
Q 011374 368 KDR--LDPALLRPGRMD--VHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEE 416 (487)
Q Consensus 368 ~~~--LD~ALlRpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ 416 (487)
|.. + |+|++ |+. ..+.+..|+.+.+..+++..+...+..+.+++.+
T Consensus 124 p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~ 173 (214)
T PRK06620 124 SRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIID 173 (214)
T ss_pred ccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 544 5 78887 774 4699999999999999988776444444444433
No 146
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=4.7e-11 Score=126.87 Aligned_cols=188 Identities=13% Similarity=0.238 Sum_probs=117.4
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-----CCcEEEeecCcc
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELSSV 284 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-----~~~v~~l~~~~~ 284 (487)
+.+||+.+..+.- +.....+..+...+ |.. ..+++||||+|||||+|++|+|+++ +..++.++...+
T Consensus 111 ~~tFdnFv~g~~n-~~A~~aa~~~a~~~------~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSN-EQAFIAVQTVSKNP------GIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcH-HHHHHHHHHHHhCc------Ccc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 4688887744432 22334443333221 222 2468999999999999999999976 356677766554
Q ss_pred cC--------h-HHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCC
Q 011374 285 EG--------N-KDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSC 355 (487)
Q Consensus 285 ~~--------~-~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~ 355 (487)
.. . ..+..+........+|+||||+.+.+ ...+...|...++.+...
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~-----------------------k~~~~e~lf~l~N~~~~~- 238 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY-----------------------KEKTNEIFFTIFNNFIEN- 238 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC-----------------------CHHHHHHHHHHHHHHHHc-
Confidence 11 0 12233333345677999999997632 122333444444444332
Q ss_pred CCceEEEEecCCC-C---CCCccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCcCCC--CchHHHHHH-HhhcCCCHH
Q 011374 356 GDERIIIFTTNHK-D---RLDPALLRPGRM--DVHIHMSYCTPCGFKMLASNYLGITEH--PLFLEVEEL-IEKVEVTPA 426 (487)
Q Consensus 356 ~~~~iiI~TTN~~-~---~LD~ALlRpGRf--d~~I~~~~p~~~~~~~l~~~~l~~~~~--~l~~~i~~l-~~~~~~spa 426 (487)
+..+|+|+|.+ + .+++.|.+ || ...+.+..|+.+++..++++.+...+. .+.+++..+ +....-++.
T Consensus 239 --~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R 314 (450)
T PRK14087 239 --DKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVR 314 (450)
T ss_pred --CCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHH
Confidence 23566776643 3 45788888 77 578899999999999999998875442 454554444 444567777
Q ss_pred HHHHHHh
Q 011374 427 DVAEQLM 433 (487)
Q Consensus 427 ~i~~~l~ 433 (487)
.+.+.|.
T Consensus 315 ~L~gaL~ 321 (450)
T PRK14087 315 KIKGSVS 321 (450)
T ss_pred HHHHHHH
Confidence 7777664
No 147
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.8e-11 Score=134.79 Aligned_cols=205 Identities=20% Similarity=0.237 Sum_probs=135.0
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----------CCcEEEeec
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLEL 281 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----------~~~v~~l~~ 281 (487)
.+|.|+|.++..+++++.|.+. -+.+-+|.|+||+|||.+|..+|... +..++.+|+
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR-------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRR-------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhcc-------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 5899999999999999888733 34578999999999999999999887 677899998
Q ss_pred Cccc--------ChHHHHHHHHHcc--CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc
Q 011374 282 SSVE--------GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL 351 (487)
Q Consensus 282 ~~~~--------~~~~l~~l~~~~~--~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl 351 (487)
+.+. -+..++.++.... .+.||||||||.+.+.....+ . ..-.+.+|...-
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G----------------~-a~DAaNiLKPaL-- 295 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG----------------G-AMDAANLLKPAL-- 295 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc----------------c-ccchhhhhHHHH--
Confidence 8872 3577788876653 379999999999976322100 0 122233333222
Q ss_pred ccCCCCceEEEEecCC--CC--CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC--CCCchHHHHHHHhhcCCCH
Q 011374 352 WSSCGDERIIIFTTNH--KD--RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT--EHPLFLEVEELIEKVEVTP 425 (487)
Q Consensus 352 ~s~~~~~~iiI~TTN~--~~--~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~--~~~l~~~i~~l~~~~~~sp 425 (487)
..|+-++|-+||-. .. .=|+||-| ||. .|.+..|+.++-..|++..-... .|...-.-..+...+.+|-
T Consensus 296 --ARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~ 370 (786)
T COG0542 296 --ARGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSD 370 (786)
T ss_pred --hcCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHH
Confidence 22333444445531 11 23999999 995 59999999999887776533221 1221111111222223332
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhhcc
Q 011374 426 ADVAEQLMRDEVPKIALSGLIQFLQIKKRETG 457 (487)
Q Consensus 426 a~i~~~l~~~~~~~~al~~l~~~l~~~~~~~~ 457 (487)
..|. ..--||+|++.+.++....+.+..
T Consensus 371 RYI~----dR~LPDKAIDLiDeA~a~~~l~~~ 398 (786)
T COG0542 371 RYIP----DRFLPDKAIDLLDEAGARVRLEID 398 (786)
T ss_pred hhcc----cCCCCchHHHHHHHHHHHHHhccc
Confidence 2222 234599999999999999988755
No 148
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.30 E-value=4.1e-11 Score=122.56 Aligned_cols=154 Identities=19% Similarity=0.266 Sum_probs=103.3
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-------cEE------
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-------DVY------ 277 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~-------~v~------ 277 (487)
-+|+.|+|+++.|..|+..+.. +...|+||.||+|||||++++++++.+.. ++.
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p 80 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDP 80 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCCh
Confidence 3799999999999998776652 22358999999999999999999888731 111
Q ss_pred ----------------------EeecCcc---cChH------HHHHHHHH-----------ccCCeEEEEeccchhhhhh
Q 011374 278 ----------------------DLELSSV---EGNK------DLRQILIA-----------TENKSILVVEDIDCCLEMQ 315 (487)
Q Consensus 278 ----------------------~l~~~~~---~~~~------~l~~l~~~-----------~~~~sIl~IDeiD~~~~~~ 315 (487)
.+.+..+ .+.+ ++...|.. .....||++|||+.+-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~--- 157 (350)
T CHL00081 81 ELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD--- 157 (350)
T ss_pred hhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC---
Confidence 0000000 0111 12222211 1235899999998763
Q ss_pred hHHHhhhcccchhhhhcccCCchhhHhhHHHHhhc---------cccCCCCceEEEEecCCCC-CCCccccCCCceeeEE
Q 011374 316 DRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDG---------LWSSCGDERIIIFTTNHKD-RLDPALLRPGRMDVHI 385 (487)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg---------l~s~~~~~~iiI~TTN~~~-~LD~ALlRpGRfd~~I 385 (487)
..+.+.|++.|+. .....+...++|+|.|..+ .+.++|+. ||.++|
T Consensus 158 ----------------------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i 213 (350)
T CHL00081 158 ----------------------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHA 213 (350)
T ss_pred ----------------------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCcee
Confidence 3456667877743 2111223456667777554 69999999 999999
Q ss_pred EeCCCC-HHHHHHHHHHhhC
Q 011374 386 HMSYCT-PCGFKMLASNYLG 404 (487)
Q Consensus 386 ~~~~p~-~~~~~~l~~~~l~ 404 (487)
.+++|+ .+.+.+|++....
T Consensus 214 ~l~~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 214 EIRTVKDPELRVKIVEQRTS 233 (350)
T ss_pred ecCCCCChHHHHHHHHhhhc
Confidence 999998 5888888887543
No 149
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.7e-11 Score=130.58 Aligned_cols=180 Identities=29% Similarity=0.382 Sum_probs=136.3
Q ss_pred hcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc------cChHHHHHHHHHc--cCCeEEEEe
Q 011374 235 KRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGNKDLRQILIAT--ENKSILVVE 306 (487)
Q Consensus 235 ~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~------~~~~~l~~l~~~~--~~~sIl~ID 306 (487)
..+..++..+..++++++++||||||||++++++|+. +.....++...+ .....++.++..+ ..++|+++|
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d 83 (494)
T COG0464 5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID 83 (494)
T ss_pred cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeec
Confidence 4567788899999999999999999999999999999 444444444333 2356667777665 356999999
Q ss_pred ccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEE
Q 011374 307 DIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIH 386 (487)
Q Consensus 307 eiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~ 386 (487)
++|.+...+.... ........+.|+..+|++. .+. ++++..||.+..+|+++.+||||+..+.
T Consensus 84 ~~~~~~~~~~~~~--------------~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (494)
T COG0464 84 EIDALAPKRSSDQ--------------GEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIE 146 (494)
T ss_pred hhhhcccCccccc--------------cchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeee
Confidence 9999976443300 3445778999999999997 455 8888899999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHHHHHH
Q 011374 387 MSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQL 432 (487)
Q Consensus 387 ~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l 432 (487)
++.|+...+.++..................++.. ..++.+++...+
T Consensus 147 ~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~ 193 (494)
T COG0464 147 VNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALA 193 (494)
T ss_pred cCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHH
Confidence 9999999998887765543222222344445443 458888887766
No 150
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.28 E-value=1.7e-11 Score=126.72 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=51.9
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhc-CCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV 284 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g-~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~ 284 (487)
-++|+++.|+.+...+.....+......++ -..|+++||+||||||||++++++|..++.+++.++.+.+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 378999999998777764333322111111 1245899999999999999999999999999999986643
No 151
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.6e-11 Score=132.44 Aligned_cols=195 Identities=19% Similarity=0.272 Sum_probs=134.0
Q ss_pred cccccCHHHHHHHHHHHHHHHhcHHHHHHhcCC----CcccceeeCCCCCcHHHHHHHHHHHcC---CcEEEeecCcccC
Q 011374 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSSVEG 286 (487)
Q Consensus 214 d~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~----~~rg~LL~GPPGtGKTsLa~alA~~l~---~~v~~l~~~~~~~ 286 (487)
..|+|+++.-+.|.+.+.. .+.|.. |-.++||.||.|+|||-||+++|..+. -.++.+|+|.+..
T Consensus 491 ~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 4578888777777776653 334432 223578899999999999999999997 8899999999976
Q ss_pred hHHHHHHHHHc------------------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHh
Q 011374 287 NKDLRQILIAT------------------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFI 348 (487)
Q Consensus 287 ~~~l~~l~~~~------------------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 348 (487)
...+.++.-.- ...|||++|||+.. +..+++-||+.+
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA-------------------------HpdV~nilLQVl 617 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA-------------------------HPDVFNLLLQVL 617 (786)
T ss_pred HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc-------------------------CHHHHHHHHHHh
Confidence 66666665322 12599999999844 567889999999
Q ss_pred hccccC--CC-----CceEEEEecCCC----------------------------CCCCccccCCCceeeEEEeCCCCHH
Q 011374 349 DGLWSS--CG-----DERIIIFTTNHK----------------------------DRLDPALLRPGRMDVHIHMSYCTPC 393 (487)
Q Consensus 349 Dgl~s~--~~-----~~~iiI~TTN~~----------------------------~~LD~ALlRpGRfd~~I~~~~p~~~ 393 (487)
|.-.-+ .| .+.|||||||-- ....|+|+. |+|..|.|.+.+.+
T Consensus 618 DdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~ 695 (786)
T COG0542 618 DDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKE 695 (786)
T ss_pred cCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHH
Confidence 853222 22 245999999942 012466666 99999999999999
Q ss_pred HHHHHHHHhhCcCCCCchHHHHHHHhh----cCCCHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 011374 394 GFKMLASNYLGITEHPLFLEVEELIEK----VEVTPADVAEQLMRDEVPKIALSGLIQFLQI 451 (487)
Q Consensus 394 ~~~~l~~~~l~~~~~~l~~~i~~l~~~----~~~spa~i~~~l~~~~~~~~al~~l~~~l~~ 451 (487)
...+|+...+.. +...+.+ ..+|++-...+.-+..++....+.+..+++.
T Consensus 696 ~l~~Iv~~~L~~--------l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~ 749 (786)
T COG0542 696 VLERIVDLQLNR--------LAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQ 749 (786)
T ss_pred HHHHHHHHHHHH--------HHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHH
Confidence 999999988852 2222211 3356555544444444555544555544443
No 152
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.27 E-value=2.1e-10 Score=117.27 Aligned_cols=153 Identities=22% Similarity=0.291 Sum_probs=102.3
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC-------CcE--------
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-------FDV-------- 276 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~-------~~v-------- 276 (487)
+|..++|++++|..++-.+.. +...++||.||||||||++++++++.+. .++
T Consensus 2 pf~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 588999999999988655541 1235799999999999999999998872 111
Q ss_pred -------------------------EEeecC----cccChHHHHHHHH-----------HccCCeEEEEeccchhhhhhh
Q 011374 277 -------------------------YDLELS----SVEGNKDLRQILI-----------ATENKSILVVEDIDCCLEMQD 316 (487)
Q Consensus 277 -------------------------~~l~~~----~~~~~~~l~~l~~-----------~~~~~sIl~IDeiD~~~~~~~ 316 (487)
.++..+ .+.+.-++...+. ....+.+||||||+.+-
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~---- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE---- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC----
Confidence 111110 1111222333221 12345899999999762
Q ss_pred HHHhhhcccchhhhhcccCCchhhHhhHHHHhhc---------cccCCCCceEEEEecCCCC-CCCccccCCCceeeEEE
Q 011374 317 RLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDG---------LWSSCGDERIIIFTTNHKD-RLDPALLRPGRMDVHIH 386 (487)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg---------l~s~~~~~~iiI~TTN~~~-~LD~ALlRpGRfd~~I~ 386 (487)
..+.+.|++.|+. .....+...++|+|+|..+ .+.++|+. ||.+++.
T Consensus 145 ---------------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~ 201 (337)
T TIGR02030 145 ---------------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAE 201 (337)
T ss_pred ---------------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEE
Confidence 3456667777742 2222223457777777554 68999999 9999999
Q ss_pred eCCCCH-HHHHHHHHHhhC
Q 011374 387 MSYCTP-CGFKMLASNYLG 404 (487)
Q Consensus 387 ~~~p~~-~~~~~l~~~~l~ 404 (487)
+++|.. +++.+|+++...
T Consensus 202 l~~p~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 202 IRTVRDVELRVEIVERRTE 220 (337)
T ss_pred CCCCCCHHHHHHHHHhhhh
Confidence 999986 788888887543
No 153
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.27 E-value=1.5e-11 Score=127.27 Aligned_cols=70 Identities=19% Similarity=0.287 Sum_probs=50.9
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhcC-CCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV 284 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~-~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~ 284 (487)
.|+|+++.|+.+...+....++......... -.++++||+||||||||++|+++|..++.+++.++.+.+
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f 86 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhh
Confidence 3889999999997777533222111001111 125789999999999999999999999999999987644
No 154
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.27 E-value=8.4e-11 Score=110.51 Aligned_cols=124 Identities=19% Similarity=0.268 Sum_probs=90.7
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCc------------------------EEEeecCcc-cChHHHHHHHHHc----
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFD------------------------VYDLELSSV-EGNKDLRQILIAT---- 297 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~------------------------v~~l~~~~~-~~~~~l~~l~~~~---- 297 (487)
.+..||||||||+|||++++++|..+... +..++...- .+.+.++.+....
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 45679999999999999999999998432 333332211 2235666555443
Q ss_pred --cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccc
Q 011374 298 --ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPAL 375 (487)
Q Consensus 298 --~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~AL 375 (487)
..+.|++|||+|.+. ....+.||..|+.. +...++|++||.+..+.+++
T Consensus 93 ~~~~~kviiide~~~l~-------------------------~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 93 QESGRRVVIIEDAERMN-------------------------EAAANALLKTLEEP----PPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred ccCCeEEEEEechhhhC-------------------------HHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHH
Confidence 235799999999773 23356688888763 34577888888889999999
Q ss_pred cCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011374 376 LRPGRMDVHIHMSYCTPCGFKMLASNY 402 (487)
Q Consensus 376 lRpGRfd~~I~~~~p~~~~~~~l~~~~ 402 (487)
.+ |. ..++|++|+.++...++...
T Consensus 144 ~s--r~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 144 RS--RC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred Hh--hc-EEeeCCCCCHHHHHHHHHHc
Confidence 98 76 47999999999988888765
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.26 E-value=6.3e-11 Score=134.84 Aligned_cols=155 Identities=22% Similarity=0.306 Sum_probs=107.1
Q ss_pred cccccCHHHHHHHHHHHHHHHhcHHHHHHhcCC----CcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccC
Q 011374 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG 286 (487)
Q Consensus 214 d~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~----~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~ 286 (487)
+.|+|+++..+.|...+... +.|.. +...+||+||||||||+||+++|+.+ ..+++.++++.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 45778888888877766532 22221 12348999999999999999999998 46788888877632
Q ss_pred hHH-------------------HHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHH
Q 011374 287 NKD-------------------LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNF 347 (487)
Q Consensus 287 ~~~-------------------l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 347 (487)
... |.+.+.. ...+|++|||||.+ .....+.||..
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~-~p~~VvllDeieka-------------------------~~~v~~~Llq~ 634 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRK-KPYTVVLFDEIEKA-------------------------HPDIFNLLLQI 634 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHh-CCCeEEEECChhhC-------------------------CHHHHHHHHHH
Confidence 222 2222221 23489999999965 24567778888
Q ss_pred hhccc--cCC-----CCceEEEEecCCCCC-------------------------------------CCccccCCCceee
Q 011374 348 IDGLW--SSC-----GDERIIIFTTNHKDR-------------------------------------LDPALLRPGRMDV 383 (487)
Q Consensus 348 lDgl~--s~~-----~~~~iiI~TTN~~~~-------------------------------------LD~ALlRpGRfd~ 383 (487)
+|.-. ... -.+.+||+|||.... +.|.|+. |+|.
T Consensus 635 le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ 712 (821)
T CHL00095 635 LDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDE 712 (821)
T ss_pred hccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCe
Confidence 88421 111 135799999995311 1245555 9999
Q ss_pred EEEeCCCCHHHHHHHHHHhhC
Q 011374 384 HIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 384 ~I~~~~p~~~~~~~l~~~~l~ 404 (487)
.|.|.+.+.++..+|+...+.
T Consensus 713 ii~F~pL~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 713 IIVFRQLTKNDVWEIAEIMLK 733 (821)
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 999999999999999988775
No 156
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.25 E-value=9.5e-11 Score=133.81 Aligned_cols=157 Identities=18% Similarity=0.300 Sum_probs=109.8
Q ss_pred ccccccCHHHHHHHHHHHHHHHhcHHHHHHhcC----CCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCccc
Q 011374 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGK----AWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE 285 (487)
Q Consensus 213 fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~----~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~ 285 (487)
-..|+|++...+.|.+.+.... .|. .+...+||+||||||||++|++||..+ +.+++.++++.+.
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~ 635 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYM 635 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHh--------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhc
Confidence 3568888888888887776432 121 123458999999999999999999988 4678888888764
Q ss_pred ChHHHHHH---------------HH---HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHH
Q 011374 286 GNKDLRQI---------------LI---ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNF 347 (487)
Q Consensus 286 ~~~~l~~l---------------~~---~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 347 (487)
....+..+ |. .....+||+||||+.+ .....+.||+.
T Consensus 636 ~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-------------------------~~~v~~~Ll~~ 690 (852)
T TIGR03346 636 EKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-------------------------HPDVFNVLLQV 690 (852)
T ss_pred ccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-------------------------CHHHHHHHHHH
Confidence 33222222 11 1234589999999865 24567778888
Q ss_pred hhccc--cCC-----CCceEEEEecCCCCC-------------------------CCccccCCCceeeEEEeCCCCHHHH
Q 011374 348 IDGLW--SSC-----GDERIIIFTTNHKDR-------------------------LDPALLRPGRMDVHIHMSYCTPCGF 395 (487)
Q Consensus 348 lDgl~--s~~-----~~~~iiI~TTN~~~~-------------------------LD~ALlRpGRfd~~I~~~~p~~~~~ 395 (487)
+|.-. ... -.+.|||+|||.... +.|.|+. |+|..+.|.+++.+..
T Consensus 691 l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l 768 (852)
T TIGR03346 691 LDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQI 768 (852)
T ss_pred HhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHH
Confidence 86321 111 135689999997311 3356665 9999999999999999
Q ss_pred HHHHHHhhC
Q 011374 396 KMLASNYLG 404 (487)
Q Consensus 396 ~~l~~~~l~ 404 (487)
..|+...+.
T Consensus 769 ~~I~~l~L~ 777 (852)
T TIGR03346 769 ARIVEIQLG 777 (852)
T ss_pred HHHHHHHHH
Confidence 999988764
No 157
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.24 E-value=8.9e-11 Score=133.47 Aligned_cols=156 Identities=18% Similarity=0.260 Sum_probs=108.1
Q ss_pred cccccCHHHHHHHHHHHHHHHhcHHHHHHhcC-CCccc-ceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChH
Q 011374 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGK-AWKRG-YLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNK 288 (487)
Q Consensus 214 d~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~-~~~rg-~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~ 288 (487)
..|+|+++..+.|.+.+.....+ +.. ..|.| +||+||||||||.+|+++|..+ ...++.++++.+....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g------l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG------LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC------CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhh
Confidence 46788888888888777643221 111 12344 7999999999999999999998 4577888887763222
Q ss_pred H-------------------HHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhh
Q 011374 289 D-------------------LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFID 349 (487)
Q Consensus 289 ~-------------------l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD 349 (487)
. |.+.+.. ...+||+|||||.+ +....+.|++.+|
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~-~p~svvllDEieka-------------------------~~~v~~~Llq~ld 693 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRR-KPYSVVLLDEVEKA-------------------------HPDVLELFYQVFD 693 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHh-CCCcEEEEechhhc-------------------------CHHHHHHHHHHhh
Confidence 2 2333332 45699999999854 2345667888887
Q ss_pred ccc--cCCC-----CceEEEEecCCCC-----------------------------CCCccccCCCceeeEEEeCCCCHH
Q 011374 350 GLW--SSCG-----DERIIIFTTNHKD-----------------------------RLDPALLRPGRMDVHIHMSYCTPC 393 (487)
Q Consensus 350 gl~--s~~~-----~~~iiI~TTN~~~-----------------------------~LD~ALlRpGRfd~~I~~~~p~~~ 393 (487)
.-. ...| .+.+||+|||... .+.|+|+. |++ .|.|.+.+.+
T Consensus 694 ~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e 770 (852)
T TIGR03345 694 KGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDD 770 (852)
T ss_pred cceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHH
Confidence 432 1111 3479999999521 14566777 998 7899999999
Q ss_pred HHHHHHHHhhC
Q 011374 394 GFKMLASNYLG 404 (487)
Q Consensus 394 ~~~~l~~~~l~ 404 (487)
+...|+...+.
T Consensus 771 ~l~~Iv~~~L~ 781 (852)
T TIGR03345 771 VLAAIVRLKLD 781 (852)
T ss_pred HHHHHHHHHHH
Confidence 99999988775
No 158
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=1e-09 Score=112.27 Aligned_cols=146 Identities=21% Similarity=0.280 Sum_probs=104.5
Q ss_pred Ccccccc-CHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC----------------
Q 011374 212 TFDTLAM-DFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF---------------- 274 (487)
Q Consensus 212 ~fd~l~g-~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~---------------- 274 (487)
.|++|.| ++.+++.+...+. ....+..||||||+|+||+++|+++|+.+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~------------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA------------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4778887 6667776655443 1234678999999999999999999998743
Q ss_pred --------cEEEeecCcc-cChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchh
Q 011374 275 --------DVYDLELSSV-EGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRV 339 (487)
Q Consensus 275 --------~v~~l~~~~~-~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (487)
++..+....- -..+.++++.... ...-|++|||+|.+- ..
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-------------------------~~ 125 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-------------------------AS 125 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-------------------------HH
Confidence 2333322211 1235666665443 235699999998762 34
Q ss_pred hHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011374 340 TLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASN 401 (487)
Q Consensus 340 ~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~ 401 (487)
..+.||..|+.- ++..++|++|+.+.+|-|++++ |. .+++|+.|+.++....++.
T Consensus 126 a~NaLLK~LEEP----p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 126 AANSLLKFLEEP----SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHHHHHhcCC----CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 567799999863 4567888899999999999998 76 5799999999988776654
No 159
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=7.1e-10 Score=112.59 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=118.7
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCc----------------
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD---------------- 275 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~---------------- 275 (487)
.|++|+|++.+++.+...+.. ...+..|||+||+|+||+++|.++|..+...
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 489999999999988776641 1235689999999999999999999987322
Q ss_pred --EEEeecCcc-----------------------cChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcc
Q 011374 276 --VYDLELSSV-----------------------EGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAA 324 (487)
Q Consensus 276 --v~~l~~~~~-----------------------~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~ 324 (487)
++.+..... -.-+.++++.... ....|++||++|.+-
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------ 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------
Confidence 222222100 0112455554333 245799999998772
Q ss_pred cchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 325 IPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 325 ~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
....+.||..|+.- + ..++|++|+.++.|-|.+++ |. ..+.|+.++.++...++.....
T Consensus 138 -------------~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~ 196 (314)
T PRK07399 138 -------------EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGD 196 (314)
T ss_pred -------------HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhc
Confidence 34567799998863 3 35778888999999999998 76 5799999999999988887643
Q ss_pred cCCCCchHHHHHHHhhcCCCHHHHHHHH
Q 011374 405 ITEHPLFLEVEELIEKVEVTPADVAEQL 432 (487)
Q Consensus 405 ~~~~~l~~~i~~l~~~~~~spa~i~~~l 432 (487)
.+. ...+...++....-+|....+.+
T Consensus 197 ~~~--~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 197 EEI--LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred ccc--chhHHHHHHHHcCCCHHHHHHHH
Confidence 221 11123445555556665555544
No 160
>PRK09087 hypothetical protein; Validated
Probab=99.18 E-value=2.3e-10 Score=110.86 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=83.3
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhh
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLY 329 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~ 329 (487)
.++||||+|+|||+|++++|+..+..++... .+. .. .+.... ..+|+|||+|.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~~-~~----~~~~~~-~~~l~iDDi~~~~~---------------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHPN--EIG-SD----AANAAA-EGPVLIEDIDAGGF---------------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecHH--Hcc-hH----HHHhhh-cCeEEEECCCCCCC----------------
Confidence 4899999999999999999998776655432 211 11 111111 25889999996511
Q ss_pred hhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhC
Q 011374 330 RSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDR---LDPALLRPGRMD--VHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 330 ~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~---LD~ALlRpGRfd--~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
.. ..|+..++.+... +..+||.++..|.. ..|.|.. |+. ..+++..|+.+.+..++++.+.
T Consensus 102 -------~~---~~lf~l~n~~~~~--g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 102 -------DE---TGLFHLINSVRQA--GTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred -------CH---HHHHHHHHHHHhC--CCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 11 2244444444332 22344444444432 3688887 774 7899999999999999999887
Q ss_pred cCCCCchHHHHHH
Q 011374 405 ITEHPLFLEVEEL 417 (487)
Q Consensus 405 ~~~~~l~~~i~~l 417 (487)
..+..+.+++...
T Consensus 168 ~~~~~l~~ev~~~ 180 (226)
T PRK09087 168 DRQLYVDPHVVYY 180 (226)
T ss_pred HcCCCCCHHHHHH
Confidence 6555555554443
No 161
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.18 E-value=2.6e-10 Score=119.31 Aligned_cols=136 Identities=21% Similarity=0.246 Sum_probs=72.4
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCc-----EEEeecCcc------------c------ChHHHHHHHHHc----cCC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFD-----VYDLELSSV------------E------GNKDLRQILIAT----ENK 300 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~-----v~~l~~~~~------------~------~~~~l~~l~~~~----~~~ 300 (487)
+++++|+||||||||++|+++|+.+... +..+.++.- . ....+.+++..+ ..+
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 5789999999999999999999988531 111111110 0 011233334333 357
Q ss_pred eEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhh--ccccCCCCceEEEEecCCCC----CCCcc
Q 011374 301 SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFID--GLWSSCGDERIIIFTTNHKD----RLDPA 374 (487)
Q Consensus 301 sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD--gl~s~~~~~~iiI~TTN~~~----~LD~A 374 (487)
+|||||||+..-..+- .+.--.......+ .......+ ....-| .+ ..+.+..||+|+|..+ .+|.|
T Consensus 274 ~vliIDEINRani~ki-FGel~~lLE~~~r---g~~~~v~l--~y~e~d~e~f--~iP~Nl~IIgTMNt~Drs~~~lD~A 345 (459)
T PRK11331 274 YVFIIDEINRANLSKV-FGEVMMLMEHDKR---GENWSVPL--TYSENDEERF--YVPENVYIIGLMNTADRSLAVVDYA 345 (459)
T ss_pred cEEEEehhhccCHHHh-hhhhhhhcccccc---ccccceee--eccccccccc--cCCCCeEEEEecCccccchhhccHH
Confidence 9999999996521100 0000000000000 00000000 000011 12 2346789999999887 79999
Q ss_pred ccCCCceeeEEEeCC-CCHHH
Q 011374 375 LLRPGRMDVHIHMSY-CTPCG 394 (487)
Q Consensus 375 LlRpGRfd~~I~~~~-p~~~~ 394 (487)
|+| ||.. |++.+ .+.+.
T Consensus 346 lrR--RF~f-i~i~p~~~~~~ 363 (459)
T PRK11331 346 LRR--RFSF-IDIEPGFDTPQ 363 (459)
T ss_pred HHh--hhhe-EEecCCCChHH
Confidence 999 9965 77654 34333
No 162
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.16 E-value=5.8e-10 Score=113.79 Aligned_cols=63 Identities=22% Similarity=0.250 Sum_probs=50.4
Q ss_pred Ccc-ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-------cEEEeec
Q 011374 212 TFD-TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-------DVYDLEL 281 (487)
Q Consensus 212 ~fd-~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~-------~v~~l~~ 281 (487)
-|+ +++|.++.++++++.+.....+ +...++.++|+|||||||||||++||+.++. ++|.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g-------~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQG-------LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 477 8999999999888776644421 1234577899999999999999999999976 8888876
No 163
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=1.8e-09 Score=110.22 Aligned_cols=124 Identities=19% Similarity=0.287 Sum_probs=94.5
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCC------------------------cEEEeecCc---ccChHHHHHHHHHcc-
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF------------------------DVYDLELSS---VEGNKDLRQILIATE- 298 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~------------------------~v~~l~~~~---~~~~~~l~~l~~~~~- 298 (487)
.+.+|||+||+|+||+++|.++|..+.+ +++.+.... .-.-+.++++.....
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 4568999999999999999999999854 445554321 123467777665432
Q ss_pred -----CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCc
Q 011374 299 -----NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDP 373 (487)
Q Consensus 299 -----~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ 373 (487)
..-|++||++|.+- ....+.||..++.- +.+.++|++|+.++.|.|
T Consensus 101 ~~~~~~~kv~iI~~a~~m~-------------------------~~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~ 151 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMN-------------------------RNAANALLKSLEEP----SGDTVLLLISHQPSRLLP 151 (328)
T ss_pred ccccCCCeEEEECChhhCC-------------------------HHHHHHHHHHHhCC----CCCeEEEEEECChhhCcH
Confidence 35688999999772 45567899998863 456889999999999999
Q ss_pred cccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011374 374 ALLRPGRMDVHIHMSYCTPCGFKMLASNY 402 (487)
Q Consensus 374 ALlRpGRfd~~I~~~~p~~~~~~~l~~~~ 402 (487)
.+++ |.. .+.|+.|+.++....+...
T Consensus 152 TI~S--Rc~-~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 152 TIKS--RCQ-QQACPLPSNEESLQWLQQA 177 (328)
T ss_pred HHHh--hce-eeeCCCcCHHHHHHHHHHh
Confidence 9998 874 5999999999887766654
No 164
>PRK08116 hypothetical protein; Validated
Probab=99.16 E-value=2.3e-10 Score=113.68 Aligned_cols=148 Identities=21% Similarity=0.317 Sum_probs=91.4
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccC--
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG-- 286 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~-- 286 (487)
+|++....++. +.+......|..+ |.... ..++|++||||||||||+|+.|||+++ +.+++.++...+..
T Consensus 83 tFdnf~~~~~~-~~a~~~a~~y~~~---~~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 83 TFENFLFDKGS-EKAYKIARKYVKK---FEEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred chhcccCChHH-HHHHHHHHHHHHH---HHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 67776644443 2244445545443 22211 234689999999999999999999987 67777777655310
Q ss_pred --------hHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCc
Q 011374 287 --------NKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDE 358 (487)
Q Consensus 287 --------~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~ 358 (487)
......++....+..+|+|||+... .........|.+.+|.... .+
T Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e-----------------------~~t~~~~~~l~~iin~r~~---~~ 211 (268)
T PRK08116 158 KSTYKSSGKEDENEIIRSLVNADLLILDDLGAE-----------------------RDTEWAREKVYNIIDSRYR---KG 211 (268)
T ss_pred HHHHhccccccHHHHHHHhcCCCEEEEecccCC-----------------------CCCHHHHHHHHHHHHHHHH---CC
Confidence 1122344455566679999999632 1123445667777776542 23
Q ss_pred eEEEEecCCC-CC----CCccccCCCce---eeEEEeCCCCH
Q 011374 359 RIIIFTTNHK-DR----LDPALLRPGRM---DVHIHMSYCTP 392 (487)
Q Consensus 359 ~iiI~TTN~~-~~----LD~ALlRpGRf---d~~I~~~~p~~ 392 (487)
..+|+|||.+ +. ++.++.. |+ ...|.|.-++.
T Consensus 212 ~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 212 LPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred CCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 5688899965 22 5667776 63 44566666664
No 165
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=5.1e-10 Score=122.59 Aligned_cols=206 Identities=20% Similarity=0.218 Sum_probs=122.9
Q ss_pred CCceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEE-
Q 011374 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD- 278 (487)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~- 278 (487)
..|.. ...|.++++|++.++..+++...+.... .+...++.++|+||||||||++++++|+.++..++.
T Consensus 72 ~pW~e--KyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew 141 (637)
T TIGR00602 72 EPWVE--KYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEW 141 (637)
T ss_pred CchHH--HhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHH
Confidence 45754 6789999999999988887665554221 123344568999999999999999999999876543
Q ss_pred eecC--------------------cc-cChHHHHHHHHHc------------cCCeEEEEeccchhhhhhhHHHhhhccc
Q 011374 279 LELS--------------------SV-EGNKDLRQILIAT------------ENKSILVVEDIDCCLEMQDRLAKAKAAI 325 (487)
Q Consensus 279 l~~~--------------------~~-~~~~~l~~l~~~~------------~~~sIl~IDeiD~~~~~~~~~~~~~~~~ 325 (487)
.+.. .+ .....+..++..+ .++.|||||||+.++..
T Consensus 142 ~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r----------- 210 (637)
T TIGR00602 142 SNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR----------- 210 (637)
T ss_pred hhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------
Confidence 1110 00 1223344444332 24679999999977531
Q ss_pred chhhhhcccCCchhhHhhHHH-HhhccccCCCCceEEEEecCCCC--------------CCCccccCCCceeeEEEeCCC
Q 011374 326 PDLYRSACNQGNRVTLSGLLN-FIDGLWSSCGDERIIIFTTNHKD--------------RLDPALLRPGRMDVHIHMSYC 390 (487)
Q Consensus 326 ~~~~~~~~~~~~~~~ls~LL~-~lDgl~s~~~~~~iiI~TTN~~~--------------~LD~ALlRpGRfd~~I~~~~p 390 (487)
....+..+|. .... .+.-.+|+++|..+. .|.++++...|+ .+|.|.+.
T Consensus 211 -----------~~~~lq~lLr~~~~e----~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPi 274 (637)
T TIGR00602 211 -----------DTRALHEILRWKYVS----IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPI 274 (637)
T ss_pred -----------hHHHHHHHHHHHhhc----CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCC
Confidence 1123444444 2111 122223333442221 134677743355 47999999
Q ss_pred CHHHHHHHHHHhhCcCCCCchHHHHHHHhhcCC-CHHHHHHHH-hccCCHHHHHHHHHHHH
Q 011374 391 TPCGFKMLASNYLGITEHPLFLEVEELIEKVEV-TPADVAEQL-MRDEVPKIALSGLIQFL 449 (487)
Q Consensus 391 ~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~-spa~i~~~l-~~~~~~~~al~~l~~~l 449 (487)
+....++.++..+..+...... ...+ ++..+..++ ...+|.+.||..|.-+.
T Consensus 275 a~t~l~K~L~rIl~~E~~~~~~-------~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 275 APTIMKKFLNRIVTIEAKKNGE-------KIKVPKKTSVELLCQGCSGDIRSAINSLQFSS 328 (637)
T ss_pred CHHHHHHHHHHHHHhhhhcccc-------ccccCCHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 9999888888877643221111 1112 233443433 34689999999887654
No 166
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.14 E-value=3.1e-11 Score=105.35 Aligned_cols=106 Identities=26% Similarity=0.312 Sum_probs=63.4
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHH--HHH-------ccC---CeEEEEeccchhhhhhhH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQI--LIA-------TEN---KSILVVEDIDCCLEMQDR 317 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l--~~~-------~~~---~sIl~IDeiD~~~~~~~~ 317 (487)
++||.|+||+|||++|+++|..++..+..+.++.-...+++.-. +.. ... ..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 47999999999999999999999999999988643333333211 010 011 369999999744
Q ss_pred HHhhhcccchhhhhcccCCchhhHhhHHHHhh-------ccccCCCCceEEEEecCCCC-----CCCccccCCCcee
Q 011374 318 LAKAKAAIPDLYRSACNQGNRVTLSGLLNFID-------GLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMD 382 (487)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD-------gl~s~~~~~~iiI~TTN~~~-----~LD~ALlRpGRfd 382 (487)
...+.|.||..|. |..-..++..+||+|-|..+ .|+.|++. ||-
T Consensus 75 -------------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 75 -------------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp --------------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred -------------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 4677899999884 33334456678999999876 68889888 873
No 167
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.13 E-value=1.8e-10 Score=108.92 Aligned_cols=140 Identities=21% Similarity=0.324 Sum_probs=67.0
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-cEE-EeecCcc-----
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-DVY-DLELSSV----- 284 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~-~v~-~l~~~~~----- 284 (487)
.|.+|.|++..|+.+.-... | +.++||+||||||||++|++++..|.- ..- .++.+.+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 48899999999998854443 3 468999999999999999999988721 000 0111111
Q ss_pred ----------------cChHHHHHHHHH----------ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCch
Q 011374 285 ----------------EGNKDLRQILIA----------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR 338 (487)
Q Consensus 285 ----------------~~~~~l~~l~~~----------~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (487)
........++.. ...+.|||+||+-. ...
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~e-------------------------f~~ 120 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNE-------------------------FDR 120 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTT-------------------------S-H
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhh-------------------------cCH
Confidence 111222233311 13468999999954 346
Q ss_pred hhHhhHHHHhhccc---------cCCCCceEEEEecCC-----------------------CCCCCccccCCCceeeEEE
Q 011374 339 VTLSGLLNFIDGLW---------SSCGDERIIIFTTNH-----------------------KDRLDPALLRPGRMDVHIH 386 (487)
Q Consensus 339 ~~ls~LL~~lDgl~---------s~~~~~~iiI~TTN~-----------------------~~~LD~ALlRpGRfd~~I~ 386 (487)
.++..|+..++.-. -.-+-+.++|+|+|. ..+|...|+. |||.+|.
T Consensus 121 ~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~ 198 (206)
T PF01078_consen 121 SVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVE 198 (206)
T ss_dssp HHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------
T ss_pred HHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--ccccccc
Confidence 78888888886321 011123578888884 1346667777 8888888
Q ss_pred eCCCCHH
Q 011374 387 MSYCTPC 393 (487)
Q Consensus 387 ~~~p~~~ 393 (487)
++..+.+
T Consensus 199 ~~~~~~~ 205 (206)
T PF01078_consen 199 VPRVSYE 205 (206)
T ss_dssp -------
T ss_pred ccccccC
Confidence 8776654
No 168
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.13 E-value=1.2e-10 Score=108.13 Aligned_cols=109 Identities=22% Similarity=0.368 Sum_probs=76.0
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCC----cEEEeecCcccC----hHHHHHHHHHcc------CCeEEEEeccchhh
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF----DVYDLELSSVEG----NKDLRQILIATE------NKSILVVEDIDCCL 312 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~----~v~~l~~~~~~~----~~~l~~l~~~~~------~~sIl~IDeiD~~~ 312 (487)
|...+||.||+|||||.||+++|..+.. +++.+|++.+.. ...+..++.... ...||||||||.+.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 3456899999999999999999999996 999999999977 555555554432 34699999999885
Q ss_pred hhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccC--CC-----CceEEEEecCCCC
Q 011374 313 EMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSS--CG-----DERIIIFTTNHKD 369 (487)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~--~~-----~~~iiI~TTN~~~ 369 (487)
.. ..... +.....+++.||+.||+-.-. .+ .+.|+|+|+|.-.
T Consensus 82 ~~-~~~~~-------------~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PS-NSGGA-------------DVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HT-TTTCS-------------HHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cc-ccccc-------------hhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 41 00000 112246678889988754211 11 3479999999643
No 169
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.10 E-value=3.7e-10 Score=110.45 Aligned_cols=97 Identities=20% Similarity=0.367 Sum_probs=69.7
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV 284 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~ 284 (487)
.++.+||+.....+..+.++..+..|.... . ....+++|+||||||||+|+.|||+++ +..++.++..++
T Consensus 66 ~~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~----~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 66 HQNCSFENYRVECEGQMNALSKARQYVEEF---D----GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred ccCCccccccCCCchHHHHHHHHHHHHHhh---c----cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH
Confidence 456799999876655556677777666431 1 113589999999999999999999998 677777776554
Q ss_pred c---------ChHHHHHHHHHccCCeEEEEeccchh
Q 011374 285 E---------GNKDLRQILIATENKSILVVEDIDCC 311 (487)
Q Consensus 285 ~---------~~~~l~~l~~~~~~~sIl~IDeiD~~ 311 (487)
. .+....+++.......+|+|||+++.
T Consensus 139 ~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~ 174 (244)
T PRK07952 139 MSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ 174 (244)
T ss_pred HHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence 2 11233455666677889999999875
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.07 E-value=5.4e-10 Score=97.07 Aligned_cols=120 Identities=27% Similarity=0.339 Sum_probs=72.7
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCc---EEEeecCccc--------------------ChHHHHHHHHHccC--CeE
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLELSSVE--------------------GNKDLRQILIATEN--KSI 302 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~---v~~l~~~~~~--------------------~~~~l~~l~~~~~~--~sI 302 (487)
+..++|+||||||||++++++|..+... ++.++..... ....+..++..+.. +.|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4578999999999999999999999875 7777766532 12233444443332 499
Q ss_pred EEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCC-CCCCCccccCCCce
Q 011374 303 LVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNH-KDRLDPALLRPGRM 381 (487)
Q Consensus 303 l~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~-~~~LD~ALlRpGRf 381 (487)
|+|||++.+........... ... ........ ......+|+++|. ....+..+.+ |+
T Consensus 82 iiiDei~~~~~~~~~~~~~~-------------~~~------~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~--~~ 138 (148)
T smart00382 82 LILDEITSLLDAEQEALLLL-------------LEE------LRLLLLLK--SEKNLTVILTTNDEKDLGPALLRR--RF 138 (148)
T ss_pred EEEECCcccCCHHHHHHHHh-------------hhh------hHHHHHHH--hcCCCEEEEEeCCCccCchhhhhh--cc
Confidence 99999998854221111000 000 00011111 1234788888887 3334444445 88
Q ss_pred eeEEEeCCC
Q 011374 382 DVHIHMSYC 390 (487)
Q Consensus 382 d~~I~~~~p 390 (487)
+.++.++.+
T Consensus 139 ~~~~~~~~~ 147 (148)
T smart00382 139 DRRIVLLLI 147 (148)
T ss_pred ceEEEecCC
Confidence 888887655
No 171
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.07 E-value=4e-09 Score=106.84 Aligned_cols=119 Identities=21% Similarity=0.310 Sum_probs=89.0
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcC------------------------CcEEEeecCcccC----hHHHHHHHHHc----
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLN------------------------FDVYDLELSSVEG----NKDLRQILIAT---- 297 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~------------------------~~v~~l~~~~~~~----~~~l~~l~~~~---- 297 (487)
.+||+||||||||++|.++|+.+. .+++.++.++... ...++++....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~ 105 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESP 105 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCC
Confidence 699999999999999999999997 5888888887754 34455555433
Q ss_pred --cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccc
Q 011374 298 --ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPAL 375 (487)
Q Consensus 298 --~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~AL 375 (487)
...-|++|||+|.+.. ...+.|+..+..- +....+|++||++..+-|.+
T Consensus 106 ~~~~~kviiidead~mt~-------------------------~A~nallk~lEep----~~~~~~il~~n~~~~il~tI 156 (325)
T COG0470 106 LEGGYKVVIIDEADKLTE-------------------------DAANALLKTLEEP----PKNTRFILITNDPSKILPTI 156 (325)
T ss_pred CCCCceEEEeCcHHHHhH-------------------------HHHHHHHHHhccC----CCCeEEEEEcCChhhccchh
Confidence 2357999999998842 3345577766643 45688999999999999988
Q ss_pred cCCCceeeEEEeCCCCHHHHHHHHH
Q 011374 376 LRPGRMDVHIHMSYCTPCGFKMLAS 400 (487)
Q Consensus 376 lRpGRfd~~I~~~~p~~~~~~~l~~ 400 (487)
.+ |. ..+.|+.|+...+....+
T Consensus 157 ~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 157 RS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred hh--cc-eeeecCCchHHHHHHHhh
Confidence 87 76 568888766655544443
No 172
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.06 E-value=9.7e-10 Score=115.93 Aligned_cols=129 Identities=18% Similarity=0.236 Sum_probs=82.6
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCC--cEEEeecC-----cccChHHHHHH-----HHH-----ccCCeEEEEeccc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELS-----SVEGNKDLRQI-----LIA-----TENKSILVVEDID 309 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~--~v~~l~~~-----~~~~~~~l~~l-----~~~-----~~~~sIl~IDeiD 309 (487)
....+||+||||||||++|+++|..++. ++..+.+. ++-+...+... |.. .+...|||+|||.
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ 117 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIW 117 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccc
Confidence 4567999999999999999999998753 22222221 11111111111 111 1123499999997
Q ss_pred hhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhh-ccccCCC-----CceEEEEecCCCC---CCCccccCCCc
Q 011374 310 CCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFID-GLWSSCG-----DERIIIFTTNHKD---RLDPALLRPGR 380 (487)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD-gl~s~~~-----~~~iiI~TTN~~~---~LD~ALlRpGR 380 (487)
.+ +..+.+.||..|. +.....+ ..+++++|||... ...+|+.. |
T Consensus 118 ra-------------------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--R 170 (498)
T PRK13531 118 KA-------------------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--R 170 (498)
T ss_pred cC-------------------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--h
Confidence 43 4678889999993 3322211 2367788888432 23358998 9
Q ss_pred eeeEEEeCCCC-HHHHHHHHHHh
Q 011374 381 MDVHIHMSYCT-PCGFKMLASNY 402 (487)
Q Consensus 381 fd~~I~~~~p~-~~~~~~l~~~~ 402 (487)
|-++|.+|+|+ .++++.|+...
T Consensus 171 Fliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 171 MLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred EEEEEECCCCCchHHHHHHHHcc
Confidence 99999999997 56778888764
No 173
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.05 E-value=6.5e-10 Score=123.06 Aligned_cols=152 Identities=22% Similarity=0.282 Sum_probs=102.8
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-------------------
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL------------------- 272 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l------------------- 272 (487)
+|..|+|++.+|..++-.+. . +.-.|+||+||||||||++|++|++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av----~---------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV----D---------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhh----C---------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 58899999988877654332 1 112479999999999999999999998
Q ss_pred ----------------CCcEEEeecCcc----cChHHHHHHHHH-----------ccCCeEEEEeccchhhhhhhHHHhh
Q 011374 273 ----------------NFDVYDLELSSV----EGNKDLRQILIA-----------TENKSILVVEDIDCCLEMQDRLAKA 321 (487)
Q Consensus 273 ----------------~~~v~~l~~~~~----~~~~~l~~l~~~-----------~~~~sIl~IDeiD~~~~~~~~~~~~ 321 (487)
..+++.+.++.. .+.-++...+.. .....|||||||+.+-
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------- 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------- 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC---------
Confidence 245665554432 122223333321 1245799999999773
Q ss_pred hcccchhhhhcccCCchhhHhhHHHHhh-cc--------ccCCCCceEEEEecCCC-CCCCccccCCCceeeEEEeCCCC
Q 011374 322 KAAIPDLYRSACNQGNRVTLSGLLNFID-GL--------WSSCGDERIIIFTTNHK-DRLDPALLRPGRMDVHIHMSYCT 391 (487)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~ls~LL~~lD-gl--------~s~~~~~~iiI~TTN~~-~~LD~ALlRpGRfd~~I~~~~p~ 391 (487)
..+++.||+.|+ |. ........++|+|+|.. ..|.++|+. ||+++|.++++.
T Consensus 140 ----------------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~ 201 (633)
T TIGR02442 140 ----------------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPR 201 (633)
T ss_pred ----------------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCC
Confidence 456677888886 21 11111246888888854 468899999 999999999886
Q ss_pred -HHHHHHHHHHhh
Q 011374 392 -PCGFKMLASNYL 403 (487)
Q Consensus 392 -~~~~~~l~~~~l 403 (487)
.+++.++++..+
T Consensus 202 ~~~~~~~il~~~~ 214 (633)
T TIGR02442 202 DPEERVEIIRRRL 214 (633)
T ss_pred chHHHHHHHHHHH
Confidence 466777776544
No 174
>PRK12377 putative replication protein; Provisional
Probab=99.05 E-value=1e-09 Score=107.66 Aligned_cols=134 Identities=20% Similarity=0.249 Sum_probs=83.0
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccC-
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG- 286 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~- 286 (487)
.+|++.....+..+.++..+..|... |.. ...+++|+||||||||+|+.|||+++ +..++.+...++..
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~---~~~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADE---LMT----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHH---HHh----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 36887765444444455555544432 111 23689999999999999999999998 56666666555411
Q ss_pred -------hHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCce
Q 011374 287 -------NKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDER 359 (487)
Q Consensus 287 -------~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ 359 (487)
......++.......+|+|||++.... +......|.+.+|.-.. ...
T Consensus 144 l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~-----------------------s~~~~~~l~~ii~~R~~---~~~ 197 (248)
T PRK12377 144 LHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRE-----------------------TKNEQVVLNQIIDRRTA---SMR 197 (248)
T ss_pred HHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCC-----------------------CHHHHHHHHHHHHHHHh---cCC
Confidence 112345666667889999999975421 12233456666665432 235
Q ss_pred EEEEecCCC-----CCCCccccC
Q 011374 360 IIIFTTNHK-----DRLDPALLR 377 (487)
Q Consensus 360 iiI~TTN~~-----~~LD~ALlR 377 (487)
-+|+|||.. +.+..+++.
T Consensus 198 ptiitSNl~~~~l~~~~~~ri~d 220 (248)
T PRK12377 198 SVGMLTNLNHEAMSTLLGERVMD 220 (248)
T ss_pred CEEEEcCCCHHHHHHHhhHHHHH
Confidence 678999964 234455554
No 175
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=1.9e-08 Score=103.04 Aligned_cols=125 Identities=17% Similarity=0.185 Sum_probs=92.5
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcCCc-------------------------EEEeecC------------------
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFD-------------------------VYDLELS------------------ 282 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~~~-------------------------v~~l~~~------------------ 282 (487)
..+.+|||+||+|+||+++|.++|..+.+. ++.+...
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 456789999999999999999999988542 2222111
Q ss_pred -----------cccChHHHHHHHHHcc------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHH
Q 011374 283 -----------SVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLL 345 (487)
Q Consensus 283 -----------~~~~~~~l~~l~~~~~------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 345 (487)
..-.-+.++++..... ..-|++||++|.+- ....+.||
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-------------------------~~AaNaLL 153 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-------------------------VAAANALL 153 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-------------------------HHHHHHHH
Confidence 0112345566554432 24588888888762 45668899
Q ss_pred HHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011374 346 NFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNY 402 (487)
Q Consensus 346 ~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~ 402 (487)
..++. ++.+.++|++|++++.|.|.+++ |. ..+.|+.|+.++..+.+...
T Consensus 154 KtLEE----Pp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 154 KTLEE----PPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred HHhcC----CCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 99985 45678999999999999999998 87 68999999999988777653
No 176
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.03 E-value=1.5e-08 Score=101.57 Aligned_cols=71 Identities=18% Similarity=0.130 Sum_probs=50.9
Q ss_pred hHhhHHHHhhccccCCCCceEEEEecCC------------CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC
Q 011374 340 TLSGLLNFIDGLWSSCGDERIIIFTTNH------------KDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITE 407 (487)
Q Consensus 340 ~ls~LL~~lDgl~s~~~~~~iiI~TTN~------------~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~ 407 (487)
.++-|-..|+.-. .-|||++||+ |..++..|+. |+ ..|...+.+.++.++|++.-...++
T Consensus 307 ~FsFlnrAlEse~-----aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~ 378 (450)
T COG1224 307 CFSFLNRALESEL-----APIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEED 378 (450)
T ss_pred HHHHHHHHhhccc-----CcEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhc
Confidence 3444445554321 2488999996 6778888998 87 6788888899999999998887777
Q ss_pred CCchHHHHHHH
Q 011374 408 HPLFLEVEELI 418 (487)
Q Consensus 408 ~~l~~~i~~l~ 418 (487)
..+.++.-+++
T Consensus 379 i~l~~~Ale~L 389 (450)
T COG1224 379 IELSDDALEYL 389 (450)
T ss_pred cccCHHHHHHH
Confidence 77766544443
No 177
>PRK04132 replication factor C small subunit; Provisional
Probab=99.03 E-value=4.7e-09 Score=117.92 Aligned_cols=126 Identities=12% Similarity=0.112 Sum_probs=100.8
Q ss_pred ceeeC--CCCCcHHHHHHHHHHHc-----CCcEEEeecCcccChHHHHHHHHHcc--------CCeEEEEeccchhhhhh
Q 011374 251 YLLYG--PPGTGKSSLIAAMANYL-----NFDVYDLELSSVEGNKDLRQILIATE--------NKSILVVEDIDCCLEMQ 315 (487)
Q Consensus 251 ~LL~G--PPGtGKTsLa~alA~~l-----~~~v~~l~~~~~~~~~~l~~l~~~~~--------~~sIl~IDeiD~~~~~~ 315 (487)
.+..| |++.||||+|.|+|+++ +.+++.+|.++..+.+.+++++.... +..|++|||+|.+-
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt--- 643 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT--- 643 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC---
Confidence 46678 99999999999999998 66899999999777778888775431 13699999999873
Q ss_pred hHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHH
Q 011374 316 DRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGF 395 (487)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~ 395 (487)
....+.|+..|+.. +....+|++||++..+.++|.+ |+ ..+.|+.++.++.
T Consensus 644 ----------------------~~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i 694 (846)
T PRK04132 644 ----------------------QDAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDI 694 (846)
T ss_pred ----------------------HHHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHH
Confidence 23456788888853 3457899999999999999998 86 6799999999998
Q ss_pred HHHHHHhhCcCCC
Q 011374 396 KMLASNYLGITEH 408 (487)
Q Consensus 396 ~~l~~~~l~~~~~ 408 (487)
...++..+..++.
T Consensus 695 ~~~L~~I~~~Egi 707 (846)
T PRK04132 695 AKRLRYIAENEGL 707 (846)
T ss_pred HHHHHHHHHhcCC
Confidence 8888776654433
No 178
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.01 E-value=2.6e-09 Score=115.52 Aligned_cols=127 Identities=16% Similarity=0.201 Sum_probs=84.8
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEe----ecCcccChHHHHHH----------HHHccCCeEEEEeccchhhhhh
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL----ELSSVEGNKDLRQI----------LIATENKSILVVEDIDCCLEMQ 315 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l----~~~~~~~~~~l~~l----------~~~~~~~sIl~IDeiD~~~~~~ 315 (487)
.+||+|+||||||++++++++......+.. +...+. ...++.- ........+++|||+|.+-
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~-~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~--- 313 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLT-AAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMD--- 313 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCcc-ccceEccCcceEEecCccEEecCCCEEEEechhhCC---
Confidence 599999999999999999999886554432 111110 0011110 0112356899999999763
Q ss_pred hHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc---------ccCCCCceEEEEecCCCC-------------CCCc
Q 011374 316 DRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL---------WSSCGDERIIIFTTNHKD-------------RLDP 373 (487)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl---------~s~~~~~~iiI~TTN~~~-------------~LD~ 373 (487)
..+.+.|+..|+.- ...-.....||+|+|..+ .|++
T Consensus 314 ----------------------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~ 371 (509)
T smart00350 314 ----------------------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPA 371 (509)
T ss_pred ----------------------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCCh
Confidence 33455566666431 111123457889999753 5899
Q ss_pred cccCCCceeeEEEe-CCCCHHHHHHHHHHhhC
Q 011374 374 ALLRPGRMDVHIHM-SYCTPCGFKMLASNYLG 404 (487)
Q Consensus 374 ALlRpGRfd~~I~~-~~p~~~~~~~l~~~~l~ 404 (487)
++++ |||+.+.+ .+|+.+..++|+++.+.
T Consensus 372 ~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 372 PILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred HHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 9999 99986655 89999999999988654
No 179
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.01 E-value=8.3e-09 Score=94.93 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=81.5
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcC-----------------------CcEEEeecCcc---cChHHHHHHHHHcc-
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN-----------------------FDVYDLELSSV---EGNKDLRQILIATE- 298 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~-----------------------~~v~~l~~~~~---~~~~~l~~l~~~~~- 298 (487)
..+..|||+||+|+||+++|.++|..+. .+++.++.... -..+.++++.....
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~ 96 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSL 96 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTS
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHH
Confidence 3456799999999999999999999872 24555554433 24577777776552
Q ss_pred -----CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCc
Q 011374 299 -----NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDP 373 (487)
Q Consensus 299 -----~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ 373 (487)
..-|++|||+|.+- ....+.||..|+.- +...++|++|+.++.|-|
T Consensus 97 ~~~~~~~KviiI~~ad~l~-------------------------~~a~NaLLK~LEep----p~~~~fiL~t~~~~~il~ 147 (162)
T PF13177_consen 97 SPSEGKYKVIIIDEADKLT-------------------------EEAQNALLKTLEEP----PENTYFILITNNPSKILP 147 (162)
T ss_dssp S-TTSSSEEEEEETGGGS--------------------------HHHHHHHHHHHHST----TTTEEEEEEES-GGGS-H
T ss_pred HHhcCCceEEEeehHhhhh-------------------------HHHHHHHHHHhcCC----CCCEEEEEEECChHHChH
Confidence 35799999999773 45678899999964 466899999999999999
Q ss_pred cccCCCceeeEEEeCCC
Q 011374 374 ALLRPGRMDVHIHMSYC 390 (487)
Q Consensus 374 ALlRpGRfd~~I~~~~p 390 (487)
.+++ |. ..+.|+..
T Consensus 148 TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 148 TIRS--RC-QVIRFRPL 161 (162)
T ss_dssp HHHT--TS-EEEEE---
T ss_pred HHHh--hc-eEEecCCC
Confidence 9998 76 56777653
No 180
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.01 E-value=1.3e-09 Score=110.20 Aligned_cols=97 Identities=24% Similarity=0.312 Sum_probs=67.1
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc--
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV-- 284 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~-- 284 (487)
..+|+++......+..+......|+... .. .+.++|++||||||||||+|+.|||+++ |+.+..+....+
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~---~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAY---PP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHh---hc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 3577777665545555555555565432 11 1356899999999999999999999998 677776665543
Q ss_pred -----cChHHHHHHHHHccCCeEEEEeccchh
Q 011374 285 -----EGNKDLRQILIATENKSILVVEDIDCC 311 (487)
Q Consensus 285 -----~~~~~l~~l~~~~~~~sIl~IDeiD~~ 311 (487)
.....+.+.+.......+|+||||..-
T Consensus 198 ~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHHhcCcHHHHHHHhcCCCEEEEecCCCc
Confidence 112234556666778899999999754
No 181
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.98 E-value=1.5e-08 Score=105.16 Aligned_cols=189 Identities=15% Similarity=0.171 Sum_probs=113.5
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC-----CcEEEeecC
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FDVYDLELS 282 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~-----~~v~~l~~~ 282 (487)
.+.-|||+++..+.-.... .....+.. ..|. ....++||||.|.|||+|++|++++.. ..++.+...
T Consensus 81 ~~~ytFdnFv~g~~N~~A~-aa~~~va~------~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 81 NPKYTFDNFVVGPSNRLAY-AAAKAVAE------NPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCchhheeeCCchHHHH-HHHHHHHh------ccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 3345899987665543322 11221221 1122 334589999999999999999999883 234433332
Q ss_pred cccChHHHH--------HHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccC
Q 011374 283 SVEGNKDLR--------QILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSS 354 (487)
Q Consensus 283 ~~~~~~~l~--------~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~ 354 (487)
.+. +..+. +.=... +--+++||||+.+.+. ..+...|.+.+..+...
T Consensus 153 ~f~-~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk-----------------------~~~qeefFh~FN~l~~~ 207 (408)
T COG0593 153 DFT-NDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGK-----------------------ERTQEEFFHTFNALLEN 207 (408)
T ss_pred HHH-HHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcCC-----------------------hhHHHHHHHHHHHHHhc
Confidence 220 11111 111112 4569999999988531 22234444444444332
Q ss_pred CCCceEEEEecCCCCC---CCccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHh-hcCCCHHHH
Q 011374 355 CGDERIIIFTTNHKDR---LDPALLRPGRM--DVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE-KVEVTPADV 428 (487)
Q Consensus 355 ~~~~~iiI~TTN~~~~---LD~ALlRpGRf--d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~i 428 (487)
+..||+.+-..|.. ++|.|.+ || ...+.+..|+.+.+..+++......+..+.+++..++. ...-+..++
T Consensus 208 --~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReL 283 (408)
T COG0593 208 --GKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVREL 283 (408)
T ss_pred --CCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHH
Confidence 22444444445654 4588887 76 56778999999999999999887777888777766554 445566666
Q ss_pred HHHHh
Q 011374 429 AEQLM 433 (487)
Q Consensus 429 ~~~l~ 433 (487)
.+.+.
T Consensus 284 egaL~ 288 (408)
T COG0593 284 EGALN 288 (408)
T ss_pred HHHHH
Confidence 65553
No 182
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.96 E-value=1.4e-08 Score=109.33 Aligned_cols=210 Identities=21% Similarity=0.285 Sum_probs=122.6
Q ss_pred CCCCceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEE
Q 011374 198 DTEIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (487)
Q Consensus 198 ~~~~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~ 277 (487)
....|.. ...|.+.++|+..+...++|..+|...+. +..+++-+||+||||||||++++++|+++++.+.
T Consensus 5 ~~~~W~~--ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 5 ESEPWVE--KYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred ccCccch--hcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 3456865 67899999999998877777776664332 3445567889999999999999999999999887
Q ss_pred Eee-cCcc----------cC-----------hHHHHHH-HHHc-------------cCCeEEEEeccchhhhhhhHHHhh
Q 011374 278 DLE-LSSV----------EG-----------NKDLRQI-LIAT-------------ENKSILVVEDIDCCLEMQDRLAKA 321 (487)
Q Consensus 278 ~l~-~~~~----------~~-----------~~~l~~l-~~~~-------------~~~sIl~IDeiD~~~~~~~~~~~~ 321 (487)
+.. ...+ .+ ...+..+ +... .++.||+|||+-..+.
T Consensus 75 Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~-------- 146 (519)
T PF03215_consen 75 EWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH-------- 146 (519)
T ss_pred EecCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc--------
Confidence 642 2221 00 0112222 1111 2467999999975542
Q ss_pred hcccchhhhhcccCCchhhHhhHHHHhhccccCCCC-ceEEEEe--c-----CCCC--------CCCccccCCCceeeEE
Q 011374 322 KAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGD-ERIIIFT--T-----NHKD--------RLDPALLRPGRMDVHI 385 (487)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~-~~iiI~T--T-----N~~~--------~LD~ALlRpGRfd~~I 385 (487)
.........|...+.. ... +.|||+| - |... .+++.++...++ .+|
T Consensus 147 -------------~~~~~f~~~L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I 208 (519)
T PF03215_consen 147 -------------RDTSRFREALRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRI 208 (519)
T ss_pred -------------hhHHHHHHHHHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEE
Confidence 1112222333334432 222 5777777 1 1111 356666654455 569
Q ss_pred EeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhcC-CCHHHHHHHHh-c-cCCHHHHHHHHHHHHH
Q 011374 386 HMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKVE-VTPADVAEQLM-R-DEVPKIALSGLIQFLQ 450 (487)
Q Consensus 386 ~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~-~spa~i~~~l~-~-~~~~~~al~~l~~~l~ 450 (487)
.|.+......+..+.+.+..+. ........ -.+.++.+.+. . ++|-+.|+..|.=+..
T Consensus 209 ~FNpIa~T~mkKaL~rI~~~E~-------~~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 209 KFNPIAPTFMKKALKRILKKEA-------RSSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred EecCCCHHHHHHHHHHHHHHHh-------hhhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 9999999888777777665320 00000001 11233233333 2 4788888877776655
No 183
>PRK08181 transposase; Validated
Probab=98.96 E-value=2.7e-09 Score=105.85 Aligned_cols=94 Identities=26% Similarity=0.436 Sum_probs=63.9
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCccc-------ChHHHHHHHHHccCCeEEEEeccchhhhhhhH
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE-------GNKDLRQILIATENKSILVVEDIDCCLEMQDR 317 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~-------~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~ 317 (487)
+.+++|+||||||||+|+.|+|+++ |+.++.++...+. ....+.+.+....+..+|+|||++....
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~---- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTK---- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccC----
Confidence 4689999999999999999999866 6677766654431 1223445566667788999999986532
Q ss_pred HHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCC
Q 011374 318 LAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHK 368 (487)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~ 368 (487)
.......|++.++..... .-+|+|||.+
T Consensus 182 -------------------~~~~~~~Lf~lin~R~~~----~s~IiTSN~~ 209 (269)
T PRK08181 182 -------------------DQAETSVLFELISARYER----RSILITANQP 209 (269)
T ss_pred -------------------CHHHHHHHHHHHHHHHhC----CCEEEEcCCC
Confidence 122234455666544322 3478899975
No 184
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.95 E-value=1.2e-08 Score=103.58 Aligned_cols=73 Identities=18% Similarity=0.121 Sum_probs=45.6
Q ss_pred hhhHhhHHHHhhccccCCCCceEEEEecCC------------CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011374 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNH------------KDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 405 (487)
Q Consensus 338 ~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~------------~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 405 (487)
-..++.|-..|+.- -.-+||++||+ |..++..|+. |+ ..|...+++.++.+++++..+..
T Consensus 292 iEcFsfLnralEs~-----~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl-lII~t~py~~~ei~~Il~iR~~~ 363 (398)
T PF06068_consen 292 IECFSFLNRALESE-----LSPIIILATNRGITKIRGTDIISPHGIPLDLLD--RL-LIIRTKPYSEEEIKQILKIRAKE 363 (398)
T ss_dssp HHHHHHHHHHHTST-----T--EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE-EEEEE----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-----CCcEEEEecCceeeeccCccCcCCCCCCcchHh--hc-EEEECCCCCHHHHHHHHHhhhhh
Confidence 34556666666643 22588999995 5677888998 87 67999999999999999998887
Q ss_pred CCCCchHHHHHHH
Q 011374 406 TEHPLFLEVEELI 418 (487)
Q Consensus 406 ~~~~l~~~i~~l~ 418 (487)
++..+.++.-.++
T Consensus 364 E~v~i~~~al~~L 376 (398)
T PF06068_consen 364 EDVEISEDALDLL 376 (398)
T ss_dssp CT--B-HHHHHHH
T ss_pred hcCcCCHHHHHHH
Confidence 7777766654444
No 185
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.8e-08 Score=99.65 Aligned_cols=119 Identities=24% Similarity=0.380 Sum_probs=77.5
Q ss_pred cccCHHHHHHHHHHHHHHHhcHHHHHHhcC--------CCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc--
Q 011374 216 LAMDFDMKKMIMDDLERFLKRKEFYKRVGK--------AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-- 285 (487)
Q Consensus 216 l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~--------~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~-- 285 (487)
|+|++..|+-+-=.+. ..|+++.. --+.++||.||.|||||.||+.+|..++.||..-|.+.+.
T Consensus 63 VIGQe~AKKvLsVAVY------NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEA 136 (408)
T COG1219 63 VIGQEQAKKVLSVAVY------NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEA 136 (408)
T ss_pred eecchhhhceeeeeeh------hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhc
Confidence 5666666665433222 23444321 1245799999999999999999999999999998888872
Q ss_pred -----C-hHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc
Q 011374 286 -----G-NKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL 351 (487)
Q Consensus 286 -----~-~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl 351 (487)
+ +.-+.+++..+ ..+.||+|||||.+..... .+...+ +-...-....||..|+|-
T Consensus 137 GYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSe--------N~SITR---DVSGEGVQQALLKiiEGT 203 (408)
T COG1219 137 GYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSE--------NPSITR---DVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCC--------CCCccc---ccCchHHHHHHHHHHcCc
Confidence 2 23345555544 3589999999999854211 111111 122345666788888875
No 186
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=5.8e-09 Score=108.76 Aligned_cols=136 Identities=24% Similarity=0.312 Sum_probs=96.3
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEee-cCcc------cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHH
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE-LSSV------EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRL 318 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~-~~~~------~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~ 318 (487)
-.++||+||||+|||+||+-+|...++|++.+- ..+. .....+++.|..+ ..-+||++|||+.+++--
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v--- 614 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV--- 614 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc---
Confidence 356999999999999999999999999998652 2222 2335577888776 335999999999997521
Q ss_pred HhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCc-cccCCCceeeEEEeCCCCH-HHHH
Q 011374 319 AKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDP-ALLRPGRMDVHIHMSYCTP-CGFK 396 (487)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~-ALlRpGRfd~~I~~~~p~~-~~~~ 396 (487)
..|...+..++..|+..+..... .|..-+|++||...+-|.. .++. .|+..|++|..+. ++..
T Consensus 615 ------------pIGPRfSN~vlQaL~VllK~~pp-kg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~ 679 (744)
T KOG0741|consen 615 ------------PIGPRFSNLVLQALLVLLKKQPP-KGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLL 679 (744)
T ss_pred ------------ccCchhhHHHHHHHHHHhccCCC-CCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHH
Confidence 11245677888888888887632 2334455566666555533 4555 8899999998876 5666
Q ss_pred HHHHH
Q 011374 397 MLASN 401 (487)
Q Consensus 397 ~l~~~ 401 (487)
+++..
T Consensus 680 ~vl~~ 684 (744)
T KOG0741|consen 680 EVLEE 684 (744)
T ss_pred HHHHH
Confidence 66544
No 187
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.90 E-value=9.8e-09 Score=97.48 Aligned_cols=155 Identities=17% Similarity=0.220 Sum_probs=97.8
Q ss_pred cccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-C----CcEEEe
Q 011374 205 VNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-N----FDVYDL 279 (487)
Q Consensus 205 ~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-~----~~v~~l 279 (487)
+....|..+.+++|.++..+++.- +.+ -|-- .++++.||||||||+-+.++|++| | --+.++
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~v----ia~-------~gnm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSV----IAK-------EGNM--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHH----HHH-------cCCC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 347789999999999877665532 222 2222 368999999999999999999988 2 345677
Q ss_pred ecCcccChHHHHHH---HHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhc
Q 011374 280 ELSSVEGNKDLRQI---LIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDG 350 (487)
Q Consensus 280 ~~~~~~~~~~l~~l---~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg 350 (487)
+.++-.+-+-++.- |.+. .+.-||++||.|++.... ...|-..|+-
T Consensus 85 NASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gA-------------------------QQAlRRtMEi 139 (333)
T KOG0991|consen 85 NASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGA-------------------------QQALRRTMEI 139 (333)
T ss_pred cCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHH-------------------------HHHHHHHHHH
Confidence 87776665555543 3332 134699999999885311 1223344443
Q ss_pred cccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 351 LWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 351 l~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
..+. .-+.+++|..+++=+.+-+ |.- .+.+...+..+...-+.....
T Consensus 140 yS~t----tRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k 186 (333)
T KOG0991|consen 140 YSNT----TRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAK 186 (333)
T ss_pred Hccc----chhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHH
Confidence 3222 3356788888877665655 543 355666666665444444333
No 188
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.89 E-value=2.8e-08 Score=109.14 Aligned_cols=128 Identities=20% Similarity=0.187 Sum_probs=89.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCC--cEEEeecCcc----cChHHHHHHHH-----------HccCCeEEEEeccchh
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELSSV----EGNKDLRQILI-----------ATENKSILVVEDIDCC 311 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~--~v~~l~~~~~----~~~~~l~~l~~-----------~~~~~sIl~IDeiD~~ 311 (487)
.++||.|+||||||+++++++..+.. +++.+.+... -+.-++...+. ......|||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 57999999999999999999998865 4776664221 11111221111 1134579999999876
Q ss_pred hhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc---------ccCCCCceEEEEecCCCC---CCCccccCCC
Q 011374 312 LEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL---------WSSCGDERIIIFTTNHKD---RLDPALLRPG 379 (487)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl---------~s~~~~~~iiI~TTN~~~---~LD~ALlRpG 379 (487)
- ..+.+.|++.|+.- .........||+|+|..+ .|.++|+.
T Consensus 97 ~-------------------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld-- 149 (589)
T TIGR02031 97 D-------------------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD-- 149 (589)
T ss_pred C-------------------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--
Confidence 2 45677788888621 111123467888999765 79999999
Q ss_pred ceeeEEEeCCC-CHHHHHHHHHHhh
Q 011374 380 RMDVHIHMSYC-TPCGFKMLASNYL 403 (487)
Q Consensus 380 Rfd~~I~~~~p-~~~~~~~l~~~~l 403 (487)
||+++|.+.++ ..+++.+|+++++
T Consensus 150 Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 150 RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred hccCeeecCCCCCHHHHHHHHHHHH
Confidence 99999999765 5566888888866
No 189
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.87 E-value=2.7e-08 Score=101.71 Aligned_cols=154 Identities=15% Similarity=0.179 Sum_probs=104.1
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChH
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNK 288 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~ 288 (487)
-|++++|....-+.+++.+...... ...+||+|++||||+++|++|.... +.+++.++|..+.. .
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~-----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-N 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-H
Confidence 4778899888888888888766432 4579999999999999999998765 46899999998753 3
Q ss_pred HHHHHH-H-----------------HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhc
Q 011374 289 DLRQIL-I-----------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDG 350 (487)
Q Consensus 289 ~l~~l~-~-----------------~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg 350 (487)
.+...+ . .......|||||||.+. ......|++.++.
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~-------------------------~~~Q~~L~~~l~~ 126 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAP-------------------------MLVQEKLLRVIEY 126 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCC-------------------------HHHHHHHHHHHhc
Confidence 333322 1 22346789999999873 2344556666653
Q ss_pred cc-cCCC------CceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHhhC
Q 011374 351 LW-SSCG------DERIIIFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCTP--CGFKMLASNYLG 404 (487)
Q Consensus 351 l~-s~~~------~~~iiI~TTN~~-------~~LD~ALlRpGRf-d~~I~~~~p~~--~~~~~l~~~~l~ 404 (487)
-. ...| .++-||+||+.. ..+.+.|.. || ..+|++|+... +++..|+..|+.
T Consensus 127 ~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~ 195 (326)
T PRK11608 127 GELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAI 195 (326)
T ss_pred CcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHH
Confidence 21 1111 135677777653 345667776 77 55777877654 456677777663
No 190
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=2.3e-07 Score=94.20 Aligned_cols=124 Identities=16% Similarity=0.183 Sum_probs=93.3
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcCC-----------------------cEEEeecC---cccChHHHHHHHHHc--
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNF-----------------------DVYDLELS---SVEGNKDLRQILIAT-- 297 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~~-----------------------~v~~l~~~---~~~~~~~l~~l~~~~-- 297 (487)
..+.+|||+||.|+||+++|.++|..+.. +++.+... ..-+.+.++++....
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE 102 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence 34568999999999999999999998832 35445432 112345666654333
Q ss_pred ----cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCc
Q 011374 298 ----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDP 373 (487)
Q Consensus 298 ----~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ 373 (487)
...-|++||++|.+- ....+.||..++. ++.+.++|++|+.++.|-|
T Consensus 103 ~~~~~~~kV~iI~~ae~m~-------------------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLp 153 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMN-------------------------ESASNALLKTLEE----PAPNCLFLLVTHNQKRLLP 153 (319)
T ss_pred CcccCCceEEEecchhhhC-------------------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChH
Confidence 234699999999773 4556789999986 3567899999999999999
Q ss_pred cccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011374 374 ALLRPGRMDVHIHMSYCTPCGFKMLASN 401 (487)
Q Consensus 374 ALlRpGRfd~~I~~~~p~~~~~~~l~~~ 401 (487)
.+++ |. ..+.|+.|+.++..+.+..
T Consensus 154 TI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 154 TIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred HHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 9998 77 5799999999988776654
No 191
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.87 E-value=1.5e-09 Score=101.35 Aligned_cols=94 Identities=26% Similarity=0.421 Sum_probs=62.0
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc-------cChHHHHHHHHHccCCeEEEEeccchhhhhhhH
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV-------EGNKDLRQILIATENKSILVVEDIDCCLEMQDR 317 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~-------~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~ 317 (487)
+.|++|+||||||||+||.|+|+++ ++.+..++..++ .......+++....+..+|+|||+....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~----- 121 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEP----- 121 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS------
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccceee-----
Confidence 5789999999999999999999877 777777776655 1223345566666778899999996431
Q ss_pred HHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCC
Q 011374 318 LAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHK 368 (487)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~ 368 (487)
........|.+.+|.-... .-+|+|||..
T Consensus 122 ------------------~~~~~~~~l~~ii~~R~~~----~~tIiTSN~~ 150 (178)
T PF01695_consen 122 ------------------LSEWEAELLFEIIDERYER----KPTIITSNLS 150 (178)
T ss_dssp --------------------HHHHHCTHHHHHHHHHT-----EEEEEESS-
T ss_pred ------------------ecccccccchhhhhHhhcc----cCeEeeCCCc
Confidence 1123345566677765432 3467799975
No 192
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=8.5e-08 Score=97.57 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=93.4
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCC------------------------cEEEeec--CcccChHHHHHHHHHc---
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF------------------------DVYDLEL--SSVEGNKDLRQILIAT--- 297 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~------------------------~v~~l~~--~~~~~~~~l~~l~~~~--- 297 (487)
.+.+|||+||+|+||+++|.++|..+.+ +++.+.. +..-+-+.++++....
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 3568999999999999999999998843 2333432 1112456677665443
Q ss_pred ---cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCcc
Q 011374 298 ---ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPA 374 (487)
Q Consensus 298 ---~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~A 374 (487)
...-|++||++|.+- ....+.||..|+. ++...++|++|++++.|-|.
T Consensus 103 ~~~g~~KV~iI~~a~~m~-------------------------~~AaNaLLKtLEE----Pp~~~~fiL~t~~~~~llpT 153 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLT-------------------------EAAANALLKTLEE----PRPNTYFLLQADLSAALLPT 153 (325)
T ss_pred cccCCceEEEEechhhhC-------------------------HHHHHHHHHHhcC----CCCCeEEEEEECChHhCchH
Confidence 234699999999773 4566789999986 45678999999999999999
Q ss_pred ccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011374 375 LLRPGRMDVHIHMSYCTPCGFKMLASNY 402 (487)
Q Consensus 375 LlRpGRfd~~I~~~~p~~~~~~~l~~~~ 402 (487)
+++ |. .++.|+.|+.++..+.+...
T Consensus 154 I~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 154 IYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred HHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 998 76 57999999999887766653
No 193
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.83 E-value=3.3e-08 Score=91.50 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=59.0
Q ss_pred cccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChHHHHH
Q 011374 216 LAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDLRQ 292 (487)
Q Consensus 216 l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~~l~~ 292 (487)
|+|.....+++++.+..... .+..+||+|++||||+.+|++|-+.. +.+++.++|+.+..+.--.+
T Consensus 1 liG~s~~m~~~~~~~~~~a~-----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC-----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 35556666667666665443 34689999999999999999999876 46899999999854333334
Q ss_pred HHHH-----------------ccCCeEEEEeccchhh
Q 011374 293 ILIA-----------------TENKSILVVEDIDCCL 312 (487)
Q Consensus 293 l~~~-----------------~~~~sIl~IDeiD~~~ 312 (487)
+|-. .....+||||||+.+.
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~ 106 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLP 106 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-
T ss_pred hhccccccccccccccCCceeeccceEEeecchhhhH
Confidence 4421 1246899999999883
No 194
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.83 E-value=1.1e-08 Score=101.86 Aligned_cols=134 Identities=25% Similarity=0.423 Sum_probs=81.0
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCc---EEEeecCcccChHHHHHHHHHc-------------cCCeEEEEeccchh
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLELSSVEGNKDLRQILIAT-------------ENKSILVVEDIDCC 311 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~---v~~l~~~~~~~~~~l~~l~~~~-------------~~~sIl~IDeiD~~ 311 (487)
++.+||.||+|||||++++..-..+.-. +..++++...+...+++++... .++.|+||||+..-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 5689999999999999998766655433 3456666655555565555332 13579999999865
Q ss_pred hhhhhHHHhhhcccchhhhhcccCCchhhHhhHH-HHhh--ccccCCC------CceEEEEecCCCC---CCCccccCCC
Q 011374 312 LEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLL-NFID--GLWSSCG------DERIIIFTTNHKD---RLDPALLRPG 379 (487)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL-~~lD--gl~s~~~------~~~iiI~TTN~~~---~LD~ALlRpG 379 (487)
.. +..+.....+|| +.|| |.+.... .++.+|+++|... .+++.|+|
T Consensus 113 ~~--------------------d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r-- 170 (272)
T PF12775_consen 113 QP--------------------DKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR-- 170 (272)
T ss_dssp -----------------------TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--
T ss_pred CC--------------------CCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--
Confidence 32 111112122344 3343 4333221 3467788888542 47889998
Q ss_pred ceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 380 RMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 380 Rfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
.|. .+.+++|+.+++..|+..++.
T Consensus 171 ~f~-i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 171 HFN-ILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp TEE-EEE----TCCHHHHHHHHHHH
T ss_pred heE-EEEecCCChHHHHHHHHHHHh
Confidence 884 699999999998888877664
No 195
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.83 E-value=1.8e-08 Score=102.77 Aligned_cols=104 Identities=22% Similarity=0.309 Sum_probs=68.2
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccC---------hHHHHHHHHHccCCeEEEEeccchhhhhh
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG---------NKDLRQILIATENKSILVVEDIDCCLEMQ 315 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~---------~~~l~~l~~~~~~~sIl~IDeiD~~~~~~ 315 (487)
..+++||||||||||+|+.|||+++ +..++.++...+.. .......+......-+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~--- 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK--- 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC---
Confidence 3789999999999999999999987 67777776655411 11122224445567899999997542
Q ss_pred hHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCC-C----CCCccccC
Q 011374 316 DRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHK-D----RLDPALLR 377 (487)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~-~----~LD~ALlR 377 (487)
......+.|.+.++..... +.-+|+|||.+ + .+++++..
T Consensus 260 --------------------~t~~~~~~Lf~iin~R~~~---~k~tIiTSNl~~~el~~~~~eri~S 303 (329)
T PRK06835 260 --------------------ITEFSKSELFNLINKRLLR---QKKMIISTNLSLEELLKTYSERISS 303 (329)
T ss_pred --------------------CCHHHHHHHHHHHHHHHHC---CCCEEEECCCCHHHHHHHHhHHHHH
Confidence 1233445666777654332 24578888864 2 24556654
No 196
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.82 E-value=3.4e-08 Score=107.65 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=104.3
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccCh
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGN 287 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~ 287 (487)
.+|+.++|....-+++++.+..... ....+||+|++||||+++|++|.... +.+++.++|..+..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~- 260 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVAR-----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE- 260 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-
Confidence 4799999999988888888876543 24579999999999999999999885 56999999998743
Q ss_pred HHHHHHH-H-----------------HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhh
Q 011374 288 KDLRQIL-I-----------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFID 349 (487)
Q Consensus 288 ~~l~~l~-~-----------------~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD 349 (487)
..+...+ . ......+|||||||.+- ......|+..++
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~-------------------------~~~Q~~Ll~~l~ 315 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEIS-------------------------PAFQAKLLRVLQ 315 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCC-------------------------HHHHHHHHHHHh
Confidence 3333322 1 12346799999999873 234455777775
Q ss_pred cc-ccCCCC------ceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCC--HHHHHHHHHHhhC
Q 011374 350 GL-WSSCGD------ERIIIFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCT--PCGFKMLASNYLG 404 (487)
Q Consensus 350 gl-~s~~~~------~~iiI~TTN~~-------~~LD~ALlRpGRf-d~~I~~~~p~--~~~~~~l~~~~l~ 404 (487)
.- ....|+ ++-+|+|||.. ..+.+.|.. |+ ...|.+|+.. .+++..|+..|+.
T Consensus 316 ~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~ 385 (534)
T TIGR01817 316 EGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLE 385 (534)
T ss_pred cCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHH
Confidence 32 111111 24567777643 233344444 55 3467888776 4667777777764
No 197
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=2.1e-07 Score=94.49 Aligned_cols=123 Identities=17% Similarity=0.216 Sum_probs=89.5
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCC---------------------cEEEee--cCcc-------cChHHHHHHHHH
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF---------------------DVYDLE--LSSV-------EGNKDLRQILIA 296 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~---------------------~v~~l~--~~~~-------~~~~~l~~l~~~ 296 (487)
.+..|||+||+|+||+++|.++|..+.+ |++.++ ...- -.-+.++++...
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 4568999999999999999999988732 233332 1110 123455555543
Q ss_pred cc------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCC
Q 011374 297 TE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDR 370 (487)
Q Consensus 297 ~~------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~ 370 (487)
.. ..-|++||++|.+- ....+.||..|+. ++...++|++|+.++.
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m~-------------------------~~AaNaLLKtLEE----Pp~~~~fiL~~~~~~~ 155 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAIN-------------------------RAACNALLKTLEE----PSPGRYLWLISAQPAR 155 (319)
T ss_pred HhhCcccCCcEEEEeccHhhhC-------------------------HHHHHHHHHHhhC----CCCCCeEEEEECChhh
Confidence 32 24699999999772 4556789998886 3456889999999999
Q ss_pred CCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011374 371 LDPALLRPGRMDVHIHMSYCTPCGFKMLASN 401 (487)
Q Consensus 371 LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~ 401 (487)
|-|.+++ |. ..+.|+.|+.++....+..
T Consensus 156 lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 156 LPATIRS--RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred CchHHHh--hh-eEeeCCCcCHHHHHHHHHH
Confidence 9999998 87 5699999999887766654
No 198
>PRK06526 transposase; Provisional
Probab=98.82 E-value=4.9e-09 Score=103.31 Aligned_cols=64 Identities=22% Similarity=0.353 Sum_probs=45.6
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc-------cChHHHHHHHHHccCCeEEEEeccchh
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV-------EGNKDLRQILIATENKSILVVEDIDCC 311 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~-------~~~~~l~~l~~~~~~~sIl~IDeiD~~ 311 (487)
+.+++|+||||||||+|+.+||.++ |+.++......+ .....+...+.......+|+|||++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccC
Confidence 4689999999999999999999886 555554444332 111233444555566789999999865
No 199
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.82 E-value=6.5e-08 Score=107.65 Aligned_cols=155 Identities=19% Similarity=0.155 Sum_probs=100.0
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC---CcEEEeecCcccChH
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSSVEGNK 288 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~---~~v~~l~~~~~~~~~ 288 (487)
+|++++|.....+++++.+...... ...+||+|++||||+++|++|.+... .+++.+||..+..+.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKS-----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 6888998888878887777655432 35699999999999999999998764 699999999985422
Q ss_pred HHHHHHHH--------------ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc-c
Q 011374 289 DLRQILIA--------------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW-S 353 (487)
Q Consensus 289 ~l~~l~~~--------------~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~-s 353 (487)
--.++|.. .....+||||||+.+. ......|+..++.-. .
T Consensus 392 ~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~-------------------------~~~Q~~Ll~~l~~~~~~ 446 (638)
T PRK11388 392 LAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLS-------------------------PELQSALLQVLKTGVIT 446 (638)
T ss_pred HHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCC-------------------------HHHHHHHHHHHhcCcEE
Confidence 22344431 2346899999999873 233455666665321 1
Q ss_pred CCCC------ceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHhhC
Q 011374 354 SCGD------ERIIIFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCTP--CGFKMLASNYLG 404 (487)
Q Consensus 354 ~~~~------~~iiI~TTN~~-------~~LD~ALlRpGRf-d~~I~~~~p~~--~~~~~l~~~~l~ 404 (487)
..+. ++-||+|||.. ..+.+.|.- |+ ...|.+|+... +++..|+..|+.
T Consensus 447 ~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~ 511 (638)
T PRK11388 447 RLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYY--ALHAFEITIPPLRMRREDIPALVNNKLR 511 (638)
T ss_pred eCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhh--hhceeEEeCCChhhhhhHHHHHHHHHHH
Confidence 1111 34577888753 122222222 23 45666766654 456667777664
No 200
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.81 E-value=3.4e-08 Score=101.12 Aligned_cols=149 Identities=16% Similarity=0.196 Sum_probs=95.6
Q ss_pred ccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChHHHHH-
Q 011374 217 AMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDLRQ- 292 (487)
Q Consensus 217 ~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~~l~~- 292 (487)
+|.....+.+++.+..... ....+||+|++||||+++|++|.... +.+++.++|..+.. ..+..
T Consensus 2 iG~S~~m~~~~~~~~~~a~-----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~ 69 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAP-----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSE 69 (329)
T ss_pred CcCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHH
Confidence 4555555666666654432 24579999999999999999998766 46999999998743 33332
Q ss_pred HH-----------------HHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc-cC
Q 011374 293 IL-----------------IATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW-SS 354 (487)
Q Consensus 293 l~-----------------~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~-s~ 354 (487)
+| .......+|||||||.+- ......|+..++.-. ..
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~-------------------------~~~Q~~Ll~~l~~~~~~~ 124 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATAS-------------------------LLVQEKLLRVIEYGEFER 124 (329)
T ss_pred HhccccccccCcccccCCchhhCCCCEEEeCChHhCC-------------------------HHHHHHHHHHHHcCcEEe
Confidence 22 122356899999999873 234455666664321 11
Q ss_pred C------CCceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCC--HHHHHHHHHHhhC
Q 011374 355 C------GDERIIIFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCT--PCGFKMLASNYLG 404 (487)
Q Consensus 355 ~------~~~~iiI~TTN~~-------~~LD~ALlRpGRf-d~~I~~~~p~--~~~~~~l~~~~l~ 404 (487)
. ..++-||+|||.. ..+.+.|.. |+ ...|++|+.. .+++..|+..|+.
T Consensus 125 ~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 125 VGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred cCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 0 1235677777743 344566666 77 4467777776 4567777777664
No 201
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.80 E-value=2.5e-08 Score=98.43 Aligned_cols=92 Identities=23% Similarity=0.427 Sum_probs=61.1
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCccc---
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE--- 285 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~--- 285 (487)
.+.++-+.+...+..+..+..+.. +|. -+.+++||||||||||+||.|||+++ |..++.+...++.
T Consensus 77 ~~~d~~~~~~~~~~~l~~~~~~~~---~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 77 EEFDFEFQPGIDKKALEDLASLVE---FFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred ccccccCCcchhHHHHHHHHHHHH---Hhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 344455555555655555554442 232 36789999999999999999999998 5677777766651
Q ss_pred ----ChHHHH-HHHHHccCCeEEEEeccchh
Q 011374 286 ----GNKDLR-QILIATENKSILVVEDIDCC 311 (487)
Q Consensus 286 ----~~~~l~-~l~~~~~~~sIl~IDeiD~~ 311 (487)
...... ++.....+--+|+|||+...
T Consensus 149 k~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 149 KAAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred HHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 111122 23333667789999999754
No 202
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=1.3e-07 Score=96.95 Aligned_cols=124 Identities=18% Similarity=0.184 Sum_probs=93.5
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcCC------------------------cEEEeecC---cccChHHHHHHHHHc-
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNF------------------------DVYDLELS---SVEGNKDLRQILIAT- 297 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------------------~v~~l~~~---~~~~~~~l~~l~~~~- 297 (487)
..+..|||+||+|+||+++|.++|..+-+ |++.+... ..-+-+.++++....
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 34568999999999999999999999833 23333222 112345666666543
Q ss_pred -----cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCC
Q 011374 298 -----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLD 372 (487)
Q Consensus 298 -----~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD 372 (487)
...-|++||++|.+- ....+.||..|+. ++...++|.+|++++.|-
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~-------------------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lL 152 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT-------------------------DAAANALLKTLEE----PPENTWFFLACREPARLL 152 (334)
T ss_pred hccccCCceEEEEcchHhhC-------------------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCh
Confidence 235699999999873 4556789999985 456789999999999999
Q ss_pred ccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011374 373 PALLRPGRMDVHIHMSYCTPCGFKMLASN 401 (487)
Q Consensus 373 ~ALlRpGRfd~~I~~~~p~~~~~~~l~~~ 401 (487)
|.+++ |.. .+.|+.|+.++....+..
T Consensus 153 pTIrS--RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 153 ATLRS--RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred HHHHh--ccc-cccCCCCCHHHHHHHHHH
Confidence 99998 774 689999999988776644
No 203
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=5.1e-08 Score=99.51 Aligned_cols=124 Identities=14% Similarity=0.186 Sum_probs=89.9
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcC-------------------------CcEEEeecCc----------ccChHHH
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN-------------------------FDVYDLELSS----------VEGNKDL 290 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~-------------------------~~v~~l~~~~----------~~~~~~l 290 (487)
..+.+|||+||+|+|||++|.++|..+. -+++.++... .-+-+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 3456899999999999999999999874 2455555421 1134566
Q ss_pred HHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEe
Q 011374 291 RQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFT 364 (487)
Q Consensus 291 ~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~T 364 (487)
+++.... ...-|++||+++.+- ....+.|+..++... ....+|++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld-------------------------~~a~naLLk~LEep~----~~~~~Ilv 149 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN-------------------------LQAANSLLKVLEEPP----PQVVFLLV 149 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC-------------------------HHHHHHHHHHHHhCc----CCCEEEEE
Confidence 7666544 234688999999772 344566888887652 34678889
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011374 365 TNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASN 401 (487)
Q Consensus 365 TN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~ 401 (487)
|++++.+.|.+.+ |. .++.|+.|+.++....+..
T Consensus 150 th~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 150 SHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred eCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 9999999999887 76 5799999999987765543
No 204
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.71 E-value=4.2e-07 Score=98.72 Aligned_cols=157 Identities=14% Similarity=0.230 Sum_probs=98.7
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCccc
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE 285 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~ 285 (487)
...+|++++|....-+.+++.+...... ...+||+|++||||+++|+++.... +.+++.++|..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~-----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML-----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 3457999999888777787777654332 3469999999999999999987654 4689999999875
Q ss_pred ChHHHH-HHHH-----------------HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHH
Q 011374 286 GNKDLR-QILI-----------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNF 347 (487)
Q Consensus 286 ~~~~l~-~l~~-----------------~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 347 (487)
. ..+. .+|. .......|||||||.+.. .....|+++
T Consensus 268 ~-~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~-------------------------~~Q~~Ll~~ 321 (520)
T PRK10820 268 D-DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSP-------------------------RMQAKLLRF 321 (520)
T ss_pred H-HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCH-------------------------HHHHHHHHH
Confidence 3 2222 2331 123467899999998732 233456666
Q ss_pred hhc-cccCCCC------ceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCCH--HHHHHHHHHhhC
Q 011374 348 IDG-LWSSCGD------ERIIIFTTNHK-------DRLDPALLRPGRMD-VHIHMSYCTP--CGFKMLASNYLG 404 (487)
Q Consensus 348 lDg-l~s~~~~------~~iiI~TTN~~-------~~LD~ALlRpGRfd-~~I~~~~p~~--~~~~~l~~~~l~ 404 (487)
+.. .....|+ ++-||+||+.. ..+.+.|.. |+. ..|++|+... +++..|+..|+.
T Consensus 322 l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~ 393 (520)
T PRK10820 322 LNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVA 393 (520)
T ss_pred HhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHH
Confidence 643 2211111 23566766653 234455555 653 5566666654 345556666553
No 205
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.8e-08 Score=101.77 Aligned_cols=131 Identities=20% Similarity=0.312 Sum_probs=89.3
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc-------C-hHHHHHHHHHc------cCCeEEEEeccchhhh
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-------G-NKDLRQILIAT------ENKSILVVEDIDCCLE 313 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~-------~-~~~l~~l~~~~------~~~sIl~IDeiD~~~~ 313 (487)
+.++||.||.|+|||.||+-+|..+++|+...||+.+. + ++-+.+++..+ .++.|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 46799999999999999999999999999999999882 1 35566777655 4679999999999863
Q ss_pred hhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcccc---------CCCCceEEEEecCC-------CCCCCccccC
Q 011374 314 MQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWS---------SCGDERIIIFTTNH-------KDRLDPALLR 377 (487)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s---------~~~~~~iiI~TTN~-------~~~LD~ALlR 377 (487)
........ .+-...-+...||..++|-.- ...++.+.|=|||- --.||.-+.|
T Consensus 306 ~~~~i~~~-----------RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r 374 (564)
T KOG0745|consen 306 KAESIHTS-----------RDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR 374 (564)
T ss_pred cCcccccc-----------ccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH
Confidence 21111000 022345677789998887421 12234555556663 3456666666
Q ss_pred CCce-eeEEEeCCCC
Q 011374 378 PGRM-DVHIHMSYCT 391 (487)
Q Consensus 378 pGRf-d~~I~~~~p~ 391 (487)
|+ |..+-|+.|+
T Consensus 375 --R~~d~slGFg~~s 387 (564)
T KOG0745|consen 375 --RLDDKSLGFGAPS 387 (564)
T ss_pred --hhcchhcccCCCC
Confidence 55 5566777773
No 206
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.69 E-value=5.7e-08 Score=104.33 Aligned_cols=143 Identities=18% Similarity=0.233 Sum_probs=88.6
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCc--EEEeecCcccC--
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD--VYDLELSSVEG-- 286 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~--v~~l~~~~~~~-- 286 (487)
..|+++.|+...++.+.-.+ .....++|+||||||||+++++++..+.-. -..++.+.+.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 47999999888766543221 234569999999999999999999865210 00111111100
Q ss_pred ----------------------hHH-------HHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCc
Q 011374 287 ----------------------NKD-------LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (487)
Q Consensus 287 ----------------------~~~-------l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (487)
... .+.-......+.|||||||+.+ .
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~-------------------------~ 308 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEF-------------------------K 308 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhC-------------------------C
Confidence 000 1111122345689999999865 2
Q ss_pred hhhHhhHHHHhhccc---cC------CCCceEEEEecCCC------C-----------------CCCccccCCCceeeEE
Q 011374 338 RVTLSGLLNFIDGLW---SS------CGDERIIIFTTNHK------D-----------------RLDPALLRPGRMDVHI 385 (487)
Q Consensus 338 ~~~ls~LL~~lDgl~---s~------~~~~~iiI~TTN~~------~-----------------~LD~ALlRpGRfd~~I 385 (487)
...+..|++.|+.-. .. -.....+|+++|.- + +|...|+. |||.++
T Consensus 309 ~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~ 386 (499)
T TIGR00368 309 RSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSV 386 (499)
T ss_pred HHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEE
Confidence 445566777664311 01 11346788888852 1 58888888 999999
Q ss_pred EeCCCCHHHH
Q 011374 386 HMSYCTPCGF 395 (487)
Q Consensus 386 ~~~~p~~~~~ 395 (487)
+++.++.+++
T Consensus 387 ~~~~~~~~~l 396 (499)
T TIGR00368 387 EVPLLPPEKL 396 (499)
T ss_pred EEcCCCHHHH
Confidence 9999887643
No 207
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.69 E-value=3.7e-07 Score=98.89 Aligned_cols=156 Identities=13% Similarity=0.165 Sum_probs=100.5
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHH-----------cCCcEEEe
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANY-----------LNFDVYDL 279 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~-----------l~~~v~~l 279 (487)
.+|++++|.....+.+.+.+..+... ...+||+|++||||+++|++|-+. -+.+++.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s-----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS-----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46999999988888888877755432 457999999999999999999887 46799999
Q ss_pred ecCcccChHHHHH-HHH------------------HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhh
Q 011374 280 ELSSVEGNKDLRQ-ILI------------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVT 340 (487)
Q Consensus 280 ~~~~~~~~~~l~~-l~~------------------~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (487)
||+.+.. ..+.. +|. .......||||||+.+. ...
T Consensus 285 nCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp-------------------------~~~ 338 (538)
T PRK15424 285 NCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP-------------------------LPL 338 (538)
T ss_pred ecccCCh-hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCC-------------------------HHH
Confidence 9998853 22322 221 12345789999999873 334
Q ss_pred HhhHHHHhhccc-cCCC------CceEEEEecCCC-CC------CCccccCCCce-eeEEEeCCCCH--HHHHHHHHHhh
Q 011374 341 LSGLLNFIDGLW-SSCG------DERIIIFTTNHK-DR------LDPALLRPGRM-DVHIHMSYCTP--CGFKMLASNYL 403 (487)
Q Consensus 341 ls~LL~~lDgl~-s~~~------~~~iiI~TTN~~-~~------LD~ALlRpGRf-d~~I~~~~p~~--~~~~~l~~~~l 403 (487)
...|+..++.-. ...| -++-||++||.. +. +.+.|.- |+ ...|++|+... +++..|+..|+
T Consensus 339 Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~~~~I~lPPLReR~eDI~~L~~~fl 416 (538)
T PRK15424 339 QTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLSILRLQLPPLRERVADILPLAESFL 416 (538)
T ss_pred HHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--HhcCCeecCCChhhchhHHHHHHHHHH
Confidence 455777775321 1111 123567777653 21 2223332 33 24566666543 45667777777
Q ss_pred Cc
Q 011374 404 GI 405 (487)
Q Consensus 404 ~~ 405 (487)
..
T Consensus 417 ~~ 418 (538)
T PRK15424 417 KQ 418 (538)
T ss_pred HH
Confidence 53
No 208
>PRK06921 hypothetical protein; Provisional
Probab=98.69 E-value=8.7e-08 Score=95.21 Aligned_cols=63 Identities=29% Similarity=0.358 Sum_probs=44.6
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc----CCcEEEeecCcccC-----hHHHHHHHHHccCCeEEEEeccch
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELSSVEG-----NKDLRQILIATENKSILVVEDIDC 310 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l----~~~v~~l~~~~~~~-----~~~l~~l~~~~~~~sIl~IDeiD~ 310 (487)
..+++|+||||||||+|+.|||+++ +..++.+...++-. ...+...+.......+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 5689999999999999999999987 45666666544310 012223344455678999999954
No 209
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.69 E-value=2.3e-08 Score=85.45 Aligned_cols=61 Identities=23% Similarity=0.354 Sum_probs=40.2
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHHHHccCCeEEEEeccchh
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCC 311 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~~~~~sIl~IDeiD~~ 311 (487)
|.||||||+|||++++.||..+.-.+-......+-....-.+.+..-....|+++||+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcc
Confidence 5799999999999999999887533211111111111222345566667889999999865
No 210
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.67 E-value=3.7e-07 Score=94.05 Aligned_cols=155 Identities=24% Similarity=0.293 Sum_probs=103.5
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC-------C---------
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-------F--------- 274 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~-------~--------- 274 (487)
-+|.-+.|++..|..|.-... .+--.|+|+-|+.|||||++++|||..|. +
T Consensus 14 ~pf~aivGqd~lk~aL~l~av-------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV-------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc-------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 368888999999988765433 22335899999999999999999999882 1
Q ss_pred ------------------------cEEEeecCccc----ChHHHHHHHH-----------HccCCeEEEEeccchhhhhh
Q 011374 275 ------------------------DVYDLELSSVE----GNKDLRQILI-----------ATENKSILVVEDIDCCLEMQ 315 (487)
Q Consensus 275 ------------------------~v~~l~~~~~~----~~~~l~~l~~-----------~~~~~sIl~IDeiD~~~~~~ 315 (487)
+++.+.++..+ +.-++.+.+. ...++.||+|||+..+-
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~--- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD--- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc---
Confidence 12222222111 1112233332 12357899999998763
Q ss_pred hHHHhhhcccchhhhhcccCCchhhHhhHHHHh---------hccccCCCCceEEEEecCCC-CCCCccccCCCceeeEE
Q 011374 316 DRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFI---------DGLWSSCGDERIIIFTTNHK-DRLDPALLRPGRMDVHI 385 (487)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l---------Dgl~s~~~~~~iiI~TTN~~-~~LD~ALlRpGRfd~~I 385 (487)
......||+.+ +|+.-..+-..++|+|+|.- ..|-|-|+. ||..+|
T Consensus 158 ----------------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v 213 (423)
T COG1239 158 ----------------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEV 213 (423)
T ss_pred ----------------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhccee
Confidence 23455566655 34443444457899999965 578889998 999999
Q ss_pred EeCCCC-HHHHHHHHHHhhCc
Q 011374 386 HMSYCT-PCGFKMLASNYLGI 405 (487)
Q Consensus 386 ~~~~p~-~~~~~~l~~~~l~~ 405 (487)
...+|. .+++.++.++-+..
T Consensus 214 ~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 214 DTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred eccCCCCHHHHHHHHHHHHHh
Confidence 997775 56677777775554
No 211
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.66 E-value=1.8e-07 Score=101.19 Aligned_cols=158 Identities=16% Similarity=0.195 Sum_probs=103.2
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCccc
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE 285 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~ 285 (487)
...+|++++|.....+.+.+.+..+... ...+||+|++||||+++|++|.+.. +.+++.+||..+.
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~A~~-----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLYARS-----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 3457999999998888888888765433 4579999999999999999998765 5799999999885
Q ss_pred ChHHHHH-HHH------------------HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHH
Q 011374 286 GNKDLRQ-ILI------------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLN 346 (487)
Q Consensus 286 ~~~~l~~-l~~------------------~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 346 (487)
. ..+.. +|. .......||||||+.+- ......|+.
T Consensus 276 e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp-------------------------~~~Q~~Ll~ 329 (526)
T TIGR02329 276 E-SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMP-------------------------LPLQTRLLR 329 (526)
T ss_pred h-hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCC-------------------------HHHHHHHHH
Confidence 3 22332 221 12345789999999873 234455666
Q ss_pred Hhhccc-cCCC------CceEEEEecCCC-C------CCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHhhCc
Q 011374 347 FIDGLW-SSCG------DERIIIFTTNHK-D------RLDPALLRPGRM-DVHIHMSYCTP--CGFKMLASNYLGI 405 (487)
Q Consensus 347 ~lDgl~-s~~~------~~~iiI~TTN~~-~------~LD~ALlRpGRf-d~~I~~~~p~~--~~~~~l~~~~l~~ 405 (487)
.++.-. ...| -++-+|+|||.. . .+.+.|.. |+ ...|++|+... +++..|+..|+..
T Consensus 330 ~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 330 VLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred HHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHH
Confidence 664321 0101 122466777653 2 22233333 45 35677777754 5677777777753
No 212
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.66 E-value=4.7e-07 Score=86.59 Aligned_cols=158 Identities=21% Similarity=0.319 Sum_probs=85.8
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEE---Eeec-Cccc--------------------------------------
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVY---DLEL-SSVE-------------------------------------- 285 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~---~l~~-~~~~-------------------------------------- 285 (487)
.+.++|+||.|+|||+|++.+.+.+.-.-+ .++. ....
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 467999999999999999999998832111 1111 1100
Q ss_pred --ChHHHHHHHHH---ccCCeEEEEeccchhh-hhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCce
Q 011374 286 --GNKDLRQILIA---TENKSILVVEDIDCCL-EMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDER 359 (487)
Q Consensus 286 --~~~~l~~l~~~---~~~~sIl~IDeiD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ 359 (487)
....+..++.. ...+.||+|||++.+. . .......+..|.+.++..... ..-.
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~-~~~~ 158 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIA--------------------SEEDKDFLKSLRSLLDSLLSQ-QNVS 158 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBC--------------------TTTTHHHHHHHHHHHHH-----TTEE
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhc--------------------ccchHHHHHHHHHHHhhcccc-CCce
Confidence 01122222222 2235999999999885 2 122355667778888774332 2223
Q ss_pred EEEEecCCC---C--CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCC---chHHHHHHHhhcCCCHHHHHH
Q 011374 360 IIIFTTNHK---D--RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHP---LFLEVEELIEKVEVTPADVAE 430 (487)
Q Consensus 360 iiI~TTN~~---~--~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~---l~~~i~~l~~~~~~spa~i~~ 430 (487)
+|+++++.. + .-.+.+. ||+.. +.+++.+.++.++++...+... .. ..++++.+..-.+-.|..|..
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 444444421 1 1223333 38877 9999999999999998876543 32 345666777777777877754
No 213
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.65 E-value=7.2e-08 Score=103.34 Aligned_cols=141 Identities=22% Similarity=0.262 Sum_probs=88.8
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcE--EEeecCccc----
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV--YDLELSSVE---- 285 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v--~~l~~~~~~---- 285 (487)
+|..+.|....++.+.- -......++|+||||||||+|++.|+..+.-.- ..++.+.+.
T Consensus 189 d~~~v~Gq~~~~~al~l---------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI---------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhhe---------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 67777777655554311 122345799999999999999999998773210 011111110
Q ss_pred -----------------ChHHHHHH----------HHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCch
Q 011374 286 -----------------GNKDLRQI----------LIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR 338 (487)
Q Consensus 286 -----------------~~~~l~~l----------~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (487)
-......+ ........+||||||+.+ ..
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~-------------------------~~ 308 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEF-------------------------ER 308 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhC-------------------------CH
Confidence 00111111 223345689999999754 34
Q ss_pred hhHhhHHHHhhc-cc--cC------CCCceEEEEecCCCC---------------------CCCccccCCCceeeEEEeC
Q 011374 339 VTLSGLLNFIDG-LW--SS------CGDERIIIFTTNHKD---------------------RLDPALLRPGRMDVHIHMS 388 (487)
Q Consensus 339 ~~ls~LL~~lDg-l~--s~------~~~~~iiI~TTN~~~---------------------~LD~ALlRpGRfd~~I~~~ 388 (487)
.++..|++.|+. .. +. ...+..+|+|+|... +|..+++. |||+++.++
T Consensus 309 ~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~ 386 (506)
T PRK09862 309 RTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIP 386 (506)
T ss_pred HHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeC
Confidence 667778887742 21 11 123468899999642 57778999 999999999
Q ss_pred CCCHHH
Q 011374 389 YCTPCG 394 (487)
Q Consensus 389 ~p~~~~ 394 (487)
+++.+.
T Consensus 387 ~~~~~~ 392 (506)
T PRK09862 387 LPPPGI 392 (506)
T ss_pred CCCHHH
Confidence 998763
No 214
>PRK09183 transposase/IS protein; Provisional
Probab=98.65 E-value=5.3e-08 Score=96.40 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=45.2
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCccc-------ChHHHHHHHHH-ccCCeEEEEeccchh
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE-------GNKDLRQILIA-TENKSILVVEDIDCC 311 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~-------~~~~l~~l~~~-~~~~sIl~IDeiD~~ 311 (487)
+.+++|+||||||||+|+.++|+.+ |+.+..++...+. ....+...+.. ...+.+++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4579999999999999999998765 6667666554431 11123344444 456789999999854
No 215
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.63 E-value=6.4e-08 Score=86.41 Aligned_cols=78 Identities=26% Similarity=0.312 Sum_probs=53.1
Q ss_pred cCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC---cEEEeecCcccChHHHHHHH
Q 011374 218 MDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF---DVYDLELSSVEGNKDLRQIL 294 (487)
Q Consensus 218 g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~---~v~~l~~~~~~~~~~l~~l~ 294 (487)
|.....+++.+.+..+.. ....+||+|+|||||+++|++|....+. +++.+++.... .+++
T Consensus 2 G~S~~~~~l~~~l~~~a~-----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l 65 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAK-----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELL 65 (138)
T ss_dssp -SCHHHHHHHHHHHHHHC-----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHH
T ss_pred CCCHHHHHHHHHHHHHhC-----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHH
Confidence 334455666666665543 2467999999999999999999998754 44445555433 4455
Q ss_pred HHccCCeEEEEeccchhh
Q 011374 295 IATENKSILVVEDIDCCL 312 (487)
Q Consensus 295 ~~~~~~sIl~IDeiD~~~ 312 (487)
..+ .+..|+|+|||.+-
T Consensus 66 ~~a-~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 66 EQA-KGGTLYLKNIDRLS 82 (138)
T ss_dssp HHC-TTSEEEEECGCCS-
T ss_pred HHc-CCCEEEECChHHCC
Confidence 554 77899999999883
No 216
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.63 E-value=2.8e-07 Score=91.05 Aligned_cols=126 Identities=22% Similarity=0.272 Sum_probs=70.7
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCC-cEEEee--cCcc-----------------cC--h----HHHHHHHHH---ccCC
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNF-DVYDLE--LSSV-----------------EG--N----KDLRQILIA---TENK 300 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~-~v~~l~--~~~~-----------------~~--~----~~l~~l~~~---~~~~ 300 (487)
-++|+||||+|||++++.+++.+.. .+.... .... .. . ..+...+.. ...+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999999999863 222111 1111 00 0 112222211 2456
Q ss_pred eEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCC---CCC----c
Q 011374 301 SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKD---RLD----P 373 (487)
Q Consensus 301 sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~---~LD----~ 373 (487)
.||+|||++.+... ....+..|.+...+ .+....||++ ..++ .+. .
T Consensus 125 ~vliiDe~~~l~~~----------------------~~~~l~~l~~~~~~----~~~~~~vvl~-g~~~~~~~l~~~~~~ 177 (269)
T TIGR03015 125 ALLVVDEAQNLTPE----------------------LLEELRMLSNFQTD----NAKLLQIFLV-GQPEFRETLQSPQLQ 177 (269)
T ss_pred eEEEEECcccCCHH----------------------HHHHHHHHhCcccC----CCCeEEEEEc-CCHHHHHHHcCchhH
Confidence 89999999976320 11122223322111 1112223333 3322 221 2
Q ss_pred cccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 374 ALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 374 ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
.+.+ |+...++++..+.++...++...+.
T Consensus 178 ~l~~--r~~~~~~l~~l~~~e~~~~l~~~l~ 206 (269)
T TIGR03015 178 QLRQ--RIIASCHLGPLDREETREYIEHRLE 206 (269)
T ss_pred HHHh--heeeeeeCCCCCHHHHHHHHHHHHH
Confidence 3445 8888999999999999998887775
No 217
>PF13173 AAA_14: AAA domain
Probab=98.63 E-value=1.8e-07 Score=82.46 Aligned_cols=63 Identities=21% Similarity=0.426 Sum_probs=47.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcC--CcEEEeecCcccChH----HHHHHHHHc--cCCeEEEEeccchh
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLN--FDVYDLELSSVEGNK----DLRQILIAT--ENKSILVVEDIDCC 311 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~--~~v~~l~~~~~~~~~----~l~~l~~~~--~~~sIl~IDeiD~~ 311 (487)
+.++|+||.|||||++++.++..+. .+++.+++.+..... ++.+.+.+. ..+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999998886 778888887753221 133444433 36799999999866
No 218
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.61 E-value=1.3e-06 Score=85.63 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=40.3
Q ss_pred eEEEEecCC-------------CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHH
Q 011374 359 RIIIFTTNH-------------KDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELI 418 (487)
Q Consensus 359 ~iiI~TTN~-------------~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~ 418 (487)
-+|||+||+ |..+++.|+. |+ +.|..-..+.++.++|++.....++..+.++.-.++
T Consensus 326 PivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l 395 (456)
T KOG1942|consen 326 PIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLL 395 (456)
T ss_pred ceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHH
Confidence 588999996 5667888888 87 556666667777778887777766666655443333
No 219
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=5.5e-08 Score=101.36 Aligned_cols=48 Identities=29% Similarity=0.425 Sum_probs=40.1
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
..+|.+|.|++..|+.+.-.. .-..++|++||||||||+||+.|...|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 448999999999999875433 346789999999999999999998776
No 220
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=5.1e-07 Score=90.17 Aligned_cols=69 Identities=17% Similarity=0.287 Sum_probs=50.0
Q ss_pred cccCHHHHHHHHHHHHHHHhcHHHHHHh-cCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc
Q 011374 216 LAMDFDMKKMIMDDLERFLKRKEFYKRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV 284 (487)
Q Consensus 216 l~g~~~~K~~i~~~l~~fl~~~~~y~~~-g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~ 284 (487)
++|+.+.|+.+-=.|..-..+...-..+ .--.|+++|..||.|+|||-+|+.+|...+.||+.+..+.+
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 6888999988755554322222111111 12357899999999999999999999999999998876654
No 221
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.56 E-value=6e-07 Score=100.77 Aligned_cols=155 Identities=17% Similarity=0.229 Sum_probs=98.8
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccCh
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGN 287 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~ 287 (487)
.+|++++|.....+.+++.+..+... ...+||+|++|||||++|++|.... +.+++.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~-----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~- 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS-----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA- 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-
Confidence 47899999999999998888765432 3579999999999999999998865 57999999988732
Q ss_pred HHHH-HHH-----------------HHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhh
Q 011374 288 KDLR-QIL-----------------IATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFID 349 (487)
Q Consensus 288 ~~l~-~l~-----------------~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD 349 (487)
..+. .+| .....+++||||||+.+- ......|+..++
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~-------------------------~~~Q~~L~~~l~ 495 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMP-------------------------LELQPKLLRVLQ 495 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCC-------------------------HHHHHHHHHHHH
Confidence 1111 111 123446899999999873 334455677765
Q ss_pred ccc-cCCC------CceEEEEecCCC-C------CCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHhhC
Q 011374 350 GLW-SSCG------DERIIIFTTNHK-D------RLDPALLRPGRM-DVHIHMSYCTP--CGFKMLASNYLG 404 (487)
Q Consensus 350 gl~-s~~~------~~~iiI~TTN~~-~------~LD~ALlRpGRf-d~~I~~~~p~~--~~~~~l~~~~l~ 404 (487)
.-. ...| .++-+|+|||.. + .+.+.|.. |+ ...|++|+... +++..|++.|+.
T Consensus 496 ~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~ 565 (686)
T PRK15429 496 EQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLNVFPIHLPPLRERPEDIPLLVKAFTF 565 (686)
T ss_pred hCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccCeeEEeCCChhhhHhHHHHHHHHHHH
Confidence 321 1101 234577777653 1 22333333 33 23566665543 445556666654
No 222
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.54 E-value=1e-06 Score=95.45 Aligned_cols=154 Identities=14% Similarity=0.144 Sum_probs=100.0
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChH
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNK 288 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~ 288 (487)
.++.++|.....+.+.+.+..... .+..+||+|++||||+++|++|.... +.+++.++|..+.. .
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~-----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA-----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-S 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-H
Confidence 578899999888888888875443 24579999999999999999999875 47899999998843 2
Q ss_pred HHH-HHHH-----------------HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhc
Q 011374 289 DLR-QILI-----------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDG 350 (487)
Q Consensus 289 ~l~-~l~~-----------------~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg 350 (487)
.+. .+|. .......|||||||.+. ......|+..++.
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~-------------------------~~~Q~~Ll~~l~~ 307 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELP-------------------------LALQAKLLRVLQY 307 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCC-------------------------HHHHHHHHHHHhc
Confidence 222 2221 12346789999999873 2334556666653
Q ss_pred cc-cCCC------CceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCCH--HHHHHHHHHhhC
Q 011374 351 LW-SSCG------DERIIIFTTNHK-------DRLDPALLRPGRMD-VHIHMSYCTP--CGFKMLASNYLG 404 (487)
Q Consensus 351 l~-s~~~------~~~iiI~TTN~~-------~~LD~ALlRpGRfd-~~I~~~~p~~--~~~~~l~~~~l~ 404 (487)
-. ...| -++-||+|||.. ..+.+.|.. |+. ..|++|+... +++..|++.|+.
T Consensus 308 ~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~ 376 (509)
T PRK05022 308 GEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLE 376 (509)
T ss_pred CCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHH
Confidence 21 1101 134567777653 234455544 553 4466666643 455666666654
No 223
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.53 E-value=8.8e-07 Score=86.10 Aligned_cols=133 Identities=22% Similarity=0.173 Sum_probs=80.0
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHHHHc-cCCeEEEEeccchhhhhhhHHHhhhccc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIAT-ENKSILVVEDIDCCLEMQDRLAKAKAAI 325 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~~-~~~sIl~IDeiD~~~~~~~~~~~~~~~~ 325 (487)
...|-.++||+|||||..++++|..+|.+++.++++.-.+...+.++|..+ ...+-+++||++.+-..
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~~----------- 99 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSEE----------- 99 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSHH-----------
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhHH-----------
Confidence 345678999999999999999999999999999999998999999999876 46899999999987320
Q ss_pred chhhhhcccCCchhhHhhHHHHh-hccccC------------CCCceEEEEecCC----CCCCCccccCCCceeeEEEeC
Q 011374 326 PDLYRSACNQGNRVTLSGLLNFI-DGLWSS------------CGDERIIIFTTNH----KDRLDPALLRPGRMDVHIHMS 388 (487)
Q Consensus 326 ~~~~~~~~~~~~~~~ls~LL~~l-Dgl~s~------------~~~~~iiI~TTN~----~~~LD~ALlRpGRfd~~I~~~ 388 (487)
.-..++..+..+ +.+... -....-+++|.|. ...|++.|.. -| +-|.|.
T Consensus 100 -----------vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~ 165 (231)
T PF12774_consen 100 -----------VLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMM 165 (231)
T ss_dssp -----------HHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--
T ss_pred -----------HHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEe
Confidence 001111111111 111000 0011234456662 3578888865 34 679999
Q ss_pred CCCHHHHHHHHHHhhC
Q 011374 389 YCTPCGFKMLASNYLG 404 (487)
Q Consensus 389 ~p~~~~~~~l~~~~l~ 404 (487)
.||...+.++.-.-.+
T Consensus 166 ~PD~~~I~ei~L~s~G 181 (231)
T PF12774_consen 166 VPDLSLIAEILLLSQG 181 (231)
T ss_dssp S--HHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHHcC
Confidence 9998877666644444
No 224
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.8e-06 Score=95.48 Aligned_cols=122 Identities=24% Similarity=0.334 Sum_probs=81.3
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCC-CcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCccc-----
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA-WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE----- 285 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~-~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~----- 285 (487)
.|+|+++.-..|-+.+.....+ ++.+ +.-.+||.||.|+|||-||+|+|.++ .-.++.+|++++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~g------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAG------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcc------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 4667777777776666543321 2222 34458999999999999999999998 4568889988732
Q ss_pred --------ChHHHHHHHHHcc--CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCC
Q 011374 286 --------GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSC 355 (487)
Q Consensus 286 --------~~~~l~~l~~~~~--~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~ 355 (487)
+....-++..... ..+||+|||||.. ....++.|++.+|.-.-+.
T Consensus 637 igsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA-------------------------h~~v~n~llq~lD~GrltD 691 (898)
T KOG1051|consen 637 IGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA-------------------------HPDVLNILLQLLDRGRLTD 691 (898)
T ss_pred cCCCcccccchhHHHHHHHHhcCCceEEEEechhhc-------------------------CHHHHHHHHHHHhcCcccc
Confidence 2223334444443 3599999999854 3566777888887432221
Q ss_pred --C-----CceEEEEecCC
Q 011374 356 --G-----DERIIIFTTNH 367 (487)
Q Consensus 356 --~-----~~~iiI~TTN~ 367 (487)
| .+.|||+|+|.
T Consensus 692 s~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 692 SHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred CCCcEeeccceEEEEeccc
Confidence 2 34699999885
No 225
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.51 E-value=4.8e-07 Score=93.57 Aligned_cols=96 Identities=18% Similarity=0.315 Sum_probs=62.1
Q ss_pred CCCcccceeeCCCCCcHHHHHHHHHHHcCCc-EEEeecCcc------------cChHHHHHHHHHccCCe-EEEEeccch
Q 011374 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLNFD-VYDLELSSV------------EGNKDLRQILIATENKS-ILVVEDIDC 310 (487)
Q Consensus 245 ~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~-v~~l~~~~~------------~~~~~l~~l~~~~~~~s-Il~IDeiD~ 310 (487)
.+.++|++||||+|+|||+|.-...+.+... --.+-+..+ .....+..+.....+.+ ||+|||+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V 138 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQV 138 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeec
Confidence 4578999999999999999999998887541 111111111 11223333444444444 999999985
Q ss_pred hhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCC
Q 011374 311 CLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHK 368 (487)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~ 368 (487)
- +-.....+..|+..+=. .++++|+|+|++
T Consensus 139 ~----------------------DiaDAmil~rLf~~l~~------~gvvlVaTSN~~ 168 (362)
T PF03969_consen 139 T----------------------DIADAMILKRLFEALFK------RGVVLVATSNRP 168 (362)
T ss_pred c----------------------chhHHHHHHHHHHHHHH------CCCEEEecCCCC
Confidence 4 22345677777776632 458999999964
No 226
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.50 E-value=5.7e-07 Score=89.31 Aligned_cols=161 Identities=17% Similarity=0.217 Sum_probs=103.6
Q ss_pred CCceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCc----
Q 011374 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD---- 275 (487)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~---- 275 (487)
-.|.+ -..|..+++|++..+.-..+.+ |. ..+. -.+.|+|||||||||+.+.|.|..+-.+
T Consensus 29 ~pwve--kyrP~~l~dv~~~~ei~st~~~----~~-------~~~~--lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~ 93 (360)
T KOG0990|consen 29 QPWVE--KYRPPFLGIVIKQEPIWSTENR----YS-------GMPG--LPHLLFYGPPGTGKTSTILANARDFYSPHPTT 93 (360)
T ss_pred CCCcc--CCCCchhhhHhcCCchhhHHHH----hc-------cCCC--CCcccccCCCCCCCCCchhhhhhhhcCCCCch
Confidence 45654 6788999999998766554433 21 1111 1289999999999999999999988542
Q ss_pred --EEEeecCcccChHHH---HHHHHHcc---------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhH
Q 011374 276 --VYDLELSSVEGNKDL---RQILIATE---------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTL 341 (487)
Q Consensus 276 --v~~l~~~~~~~~~~l---~~l~~~~~---------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 341 (487)
+..++.++-.+-.-+ ...|..+. ....+++||.|.+.. ...
T Consensus 94 ~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~-------------------------~AQ 148 (360)
T KOG0990|consen 94 SMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR-------------------------DAQ 148 (360)
T ss_pred hHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH-------------------------HHH
Confidence 223444443222222 22333332 456899999998742 223
Q ss_pred hhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC
Q 011374 342 SGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITE 407 (487)
Q Consensus 342 s~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~ 407 (487)
+.|-..+..+. .+.-+...+|++..+.|++.. |+. ...|...+..+......+....+.
T Consensus 149 nALRRviek~t----~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 149 NALRRVIEKYT----ANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred HHHHHHHHHhc----cceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcch
Confidence 33444555442 234455788999999999998 775 477777777777777777666543
No 227
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.49 E-value=2.9e-06 Score=91.78 Aligned_cols=170 Identities=16% Similarity=0.176 Sum_probs=104.4
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc----------CCcEEEeecCcccChHHH----------------------HHHHH--
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLELSSVEGNKDL----------------------RQILI-- 295 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l----------~~~v~~l~~~~~~~~~~l----------------------~~l~~-- 295 (487)
.+++.|-||||||.++..+-+.| .++++.+|...+.....+ ..-|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 47788999999999999998877 467778877666433222 22222
Q ss_pred -HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCC----
Q 011374 296 -ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDR---- 370 (487)
Q Consensus 296 -~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~---- 370 (487)
....++||+|||.|.++.. ...-|.|++|-... .+...+||+..|+-+.
T Consensus 504 k~~~~~~VvLiDElD~Lvtr-------------------------~QdVlYn~fdWpt~-~~sKLvvi~IaNTmdlPEr~ 557 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTR-------------------------SQDVLYNIFDWPTL-KNSKLVVIAIANTMDLPERL 557 (767)
T ss_pred CCCCCCEEEEeccHHHHhcc-------------------------cHHHHHHHhcCCcC-CCCceEEEEecccccCHHHH
Confidence 1124689999999999741 12335666663322 1223455555554332
Q ss_pred CCccccCCCcee-eEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhcCCCHHHHHHHHhccCCHHHHHHHHHHHH
Q 011374 371 LDPALLRPGRMD-VHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKVEVTPADVAEQLMRDEVPKIALSGLIQFL 449 (487)
Q Consensus 371 LD~ALlRpGRfd-~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~~~l~~~~~~~~al~~l~~~l 449 (487)
|.+.... |++ ..|.|.+.+.+|+.+|+..-|....+- ..++.+++.. ....-++|++.|++-+..+.
T Consensus 558 l~nrvsS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f-~~~aielvar---------kVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 558 LMNRVSS--RLGLTRICFQPYTHEQLQEIISARLKGLDAF-ENKAIELVAR---------KVAAVSGDARRALDICRRAA 625 (767)
T ss_pred hccchhh--hccceeeecCCCCHHHHHHHHHHhhcchhhc-chhHHHHHHH---------HHHhccccHHHHHHHHHHHH
Confidence 2222222 443 468899999999999998887643221 2233333321 11122578888888888888
Q ss_pred HHHHhhcc
Q 011374 450 QIKKRETG 457 (487)
Q Consensus 450 ~~~~~~~~ 457 (487)
+.+.....
T Consensus 626 Eia~~~~~ 633 (767)
T KOG1514|consen 626 EIAEERNV 633 (767)
T ss_pred HHhhhhcc
Confidence 77766555
No 228
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.47 E-value=8.1e-07 Score=99.92 Aligned_cols=127 Identities=17% Similarity=0.256 Sum_probs=79.5
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcE-------EEeecCcccC-hHHH-HHH-----HHHccCCeEEEEeccchhhhhh
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDV-------YDLELSSVEG-NKDL-RQI-----LIATENKSILVVEDIDCCLEMQ 315 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v-------~~l~~~~~~~-~~~l-~~l-----~~~~~~~sIl~IDeiD~~~~~~ 315 (487)
.+||.|+||||||.+++++++...... ..++++.... .... ... ........+++|||+|.+-
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms--- 570 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCH--- 570 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCC---
Confidence 599999999999999999998664333 3333332210 0000 000 0112346899999999773
Q ss_pred hHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc---------ccCCCCceEEEEecCCCC-------------CCCc
Q 011374 316 DRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL---------WSSCGDERIIIFTTNHKD-------------RLDP 373 (487)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl---------~s~~~~~~iiI~TTN~~~-------------~LD~ 373 (487)
....+.|+..|+.- ...-....-||+|+|..+ .|++
T Consensus 571 ----------------------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~ 628 (915)
T PTZ00111 571 ----------------------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISP 628 (915)
T ss_pred ----------------------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCCh
Confidence 23445567766432 111123467889999742 3679
Q ss_pred cccCCCceeeEE-EeCCCCHHHHHHHHHHhh
Q 011374 374 ALLRPGRMDVHI-HMSYCTPCGFKMLASNYL 403 (487)
Q Consensus 374 ALlRpGRfd~~I-~~~~p~~~~~~~l~~~~l 403 (487)
+|+. |||... -++.|+.+.=+.|+.+.+
T Consensus 629 ~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 629 SLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred HHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 9999 998865 458888877666665544
No 229
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=1.5e-05 Score=79.81 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=80.7
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCC----------------cEEEeecCc---ccChHHHHHHHHHcc------CCe
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF----------------DVYDLELSS---VEGNKDLRQILIATE------NKS 301 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~----------------~v~~l~~~~---~~~~~~l~~l~~~~~------~~s 301 (487)
.+..|||+||+|+||+.+|.++|..+-+ +++.+.... .-+-+.++++..... ..-
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 4568999999999999999999998843 233332211 123445555554432 346
Q ss_pred EEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCce
Q 011374 302 ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRM 381 (487)
Q Consensus 302 Il~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRf 381 (487)
|++||++|.+- ....+.||..|+. +++..++|+.|+.++.|.|.+++ |.
T Consensus 98 v~ii~~ad~mt-------------------------~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~S--Rc 146 (290)
T PRK05917 98 IYIIHEADRMT-------------------------LDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRS--RS 146 (290)
T ss_pred EEEEechhhcC-------------------------HHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHh--cc
Confidence 99999999773 3456789999986 35678999999999999999987 76
Q ss_pred eeEEEeCCC
Q 011374 382 DVHIHMSYC 390 (487)
Q Consensus 382 d~~I~~~~p 390 (487)
..+.|+.+
T Consensus 147 -q~~~~~~~ 154 (290)
T PRK05917 147 -LSIHIPME 154 (290)
T ss_pred -eEEEccch
Confidence 45777754
No 230
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.46 E-value=9.1e-07 Score=97.51 Aligned_cols=50 Identities=34% Similarity=0.414 Sum_probs=40.6
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCc
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD 275 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~ 275 (487)
..|++++|.++.++.+...+. .+++++|+||||||||++++++|+.++.+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 578899999888876654443 13589999999999999999999999654
No 231
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.42 E-value=6.8e-07 Score=78.17 Aligned_cols=38 Identities=37% Similarity=0.589 Sum_probs=28.9
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc--------CCcEEEeecCccc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL--------NFDVYDLELSSVE 285 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l--------~~~v~~l~~~~~~ 285 (487)
++.++++||||+|||++++.++..+ +.+++.+++....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 4568999999999999999999988 6777777766543
No 232
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.42 E-value=1.2e-06 Score=91.00 Aligned_cols=158 Identities=14% Similarity=0.142 Sum_probs=106.6
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----CCcEEEeecCccc
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELSSVE 285 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----~~~v~~l~~~~~~ 285 (487)
...+++|+|....-+++++.+..+- +....+|++|++||||+.+|++|.... ..|++.+||+.+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~a-----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYA-----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhC-----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 3479999999888888888887521 334679999999999999999997443 5689999999997
Q ss_pred ChHHHHHHHHHc-----------------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHh
Q 011374 286 GNKDLRQILIAT-----------------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFI 348 (487)
Q Consensus 286 ~~~~l~~l~~~~-----------------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 348 (487)
.+-...++|-.. .+..+||+|||..+.. .....||.+|
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~-------------------------~~Q~kLl~~l 197 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP-------------------------EGQEKLLRVL 197 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCH-------------------------hHHHHHHHHH
Confidence 666666666321 2458999999997742 2334577777
Q ss_pred hcc-cc------CCCCceEEEEecCC-C-CCCCc--ccc-CCCceeeEEEeCCCCH--HHHHHHHHHhhCc
Q 011374 349 DGL-WS------SCGDERIIIFTTNH-K-DRLDP--ALL-RPGRMDVHIHMSYCTP--CGFKMLASNYLGI 405 (487)
Q Consensus 349 Dgl-~s------~~~~~~iiI~TTN~-~-~~LD~--ALl-RpGRfd~~I~~~~p~~--~~~~~l~~~~l~~ 405 (487)
|.- +. .....+-+|++||- + +.+-. .|. | |+.+.|.+|+..+ +++..+++.|+..
T Consensus 198 e~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r--l~~~~I~LPpLrER~~Di~~L~e~Fl~~ 266 (403)
T COG1221 198 EEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR--LNILTITLPPLRERKEDILLLAEHFLKS 266 (403)
T ss_pred HcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh--hcCceecCCChhhchhhHHHHHHHHHHH
Confidence 741 11 11234566676663 2 22222 333 4 6777888887764 4456666766653
No 233
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.41 E-value=3.3e-06 Score=89.20 Aligned_cols=176 Identities=20% Similarity=0.321 Sum_probs=103.4
Q ss_pred CCCCceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEE
Q 011374 198 DTEIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (487)
Q Consensus 198 ~~~~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~ 277 (487)
.+..|.. ...|++.++|+..+....+|.+++..+... ......+-+||+||+||||||.++.||.++|+.+.
T Consensus 68 ~~elW~e--Ky~P~t~eeLAVHkkKI~eVk~WL~~~~~~------~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 68 EFELWVE--KYKPRTLEELAVHKKKISEVKQWLKQVAEF------TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred ccchhHH--hcCcccHHHHhhhHHhHHHHHHHHHHHHHh------ccCCCceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 4556764 568999999999877777776666522211 11233456889999999999999999999999988
Q ss_pred Eee-------cCcccCh---------HHHHH---HHHHc--------------cCCeEEEEeccchhhhhhhHHHhhhcc
Q 011374 278 DLE-------LSSVEGN---------KDLRQ---ILIAT--------------ENKSILVVEDIDCCLEMQDRLAKAKAA 324 (487)
Q Consensus 278 ~l~-------~~~~~~~---------~~l~~---l~~~~--------------~~~sIl~IDeiD~~~~~~~~~~~~~~~ 324 (487)
... ...++.. +.|.. .+..+ ..+.+|+|||+=..+..
T Consensus 140 Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~---------- 209 (634)
T KOG1970|consen 140 EWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR---------- 209 (634)
T ss_pred eecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh----------
Confidence 654 1112111 11111 11111 23569999999755431
Q ss_pred cchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCC--CCCCCccccCC------CceeeEEEeCCCCHHHHH
Q 011374 325 IPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNH--KDRLDPALLRP------GRMDVHIHMSYCTPCGFK 396 (487)
Q Consensus 325 ~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~--~~~LD~ALlRp------GRfd~~I~~~~p~~~~~~ 396 (487)
.....+...|..+-.. |.--+||+.|++ ++..++..++| .|++ +|.|.+-...-.+
T Consensus 210 -----------d~~~~f~evL~~y~s~----g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MK 273 (634)
T KOG1970|consen 210 -----------DDSETFREVLRLYVSI----GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMK 273 (634)
T ss_pred -----------hhHHHHHHHHHHHHhc----CCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHH
Confidence 1233333344322211 111244444443 34444443322 3554 5888888888888
Q ss_pred HHHHHhhCcCC
Q 011374 397 MLASNYLGITE 407 (487)
Q Consensus 397 ~l~~~~l~~~~ 407 (487)
+.++..+....
T Consensus 274 K~L~ric~~e~ 284 (634)
T KOG1970|consen 274 KFLKRICRIEA 284 (634)
T ss_pred HHHHHHHHHhc
Confidence 87777776543
No 234
>PHA02624 large T antigen; Provisional
Probab=98.41 E-value=7.8e-07 Score=95.86 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=80.8
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKA 323 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~ 323 (487)
|+|.++.+|||||||||||+++++|++.++-.++.++.. .+.+.-.+.-+...-+.+|||+-.-.-....-.
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsP----t~ks~FwL~pl~D~~~~l~dD~t~~~~~~~~Lp---- 498 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCP----PDKLNFELGCAIDQFMVVFEDVKGQPADNKDLP---- 498 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCC----cchhHHHhhhhhhceEEEeeeccccccccccCC----
Confidence 567888999999999999999999999996666656533 234444555556678999999963321000000
Q ss_pred ccchhhhhcccCCchhhHhhHHHHhhccccCCCC-----c-----eEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 011374 324 AIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGD-----E-----RIIIFTTNHKDRLDPALLRPGRMDVHIHMSY 389 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~-----~-----~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~ 389 (487)
....-..+..|-|.+||-...+=+ . --+|.|||. ..|+..+.- ||-.++.|..
T Consensus 499 ----------~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 499 ----------SGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ----------cccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 011122356788899986111100 0 136778885 456777777 8888888763
No 235
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=1.5e-05 Score=80.33 Aligned_cols=122 Identities=14% Similarity=0.170 Sum_probs=90.2
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCC-------------cEEEee--cCcccChHHHHHHHHHc---c----CCeEEE
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF-------------DVYDLE--LSSVEGNKDLRQILIAT---E----NKSILV 304 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~-------------~v~~l~--~~~~~~~~~l~~l~~~~---~----~~sIl~ 304 (487)
....|||+|+.|+||+.++.++|+.+.+ ++..++ ... -..+.++++.... + .+-|++
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-i~vd~Ir~l~~~~~~~~~~~~~~KvvI 95 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-LSKSEFLSAINKLYFSSFVQSQKKILI 95 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-CCHHHHHHHHHHhccCCcccCCceEEE
Confidence 4568999999999999999999998722 233344 222 2345666666544 2 567999
Q ss_pred EeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeE
Q 011374 305 VEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVH 384 (487)
Q Consensus 305 IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~ 384 (487)
||++|.+. ....+.||..|+.- +...++|++|+.+++|-|.+.+ |. ..
T Consensus 96 I~~~e~m~-------------------------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~S--Rc-~~ 143 (299)
T PRK07132 96 IKNIEKTS-------------------------NSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVS--RC-QV 143 (299)
T ss_pred EecccccC-------------------------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHh--Ce-EE
Confidence 99998662 34566799998863 4568888888888999999887 65 56
Q ss_pred EEeCCCCHHHHHHHHHH
Q 011374 385 IHMSYCTPCGFKMLASN 401 (487)
Q Consensus 385 I~~~~p~~~~~~~l~~~ 401 (487)
++|.+++.++....+..
T Consensus 144 ~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 144 FNVKEPDQQKILAKLLS 160 (299)
T ss_pred EECCCCCHHHHHHHHHH
Confidence 99999999988766554
No 236
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=1.2e-05 Score=78.90 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=80.3
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcCC----------------------cEEEeecCc-ccChHHHHHHHHHc---c-
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNF----------------------DVYDLELSS-VEGNKDLRQILIAT---E- 298 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~~----------------------~v~~l~~~~-~~~~~~l~~l~~~~---~- 298 (487)
..+..+||+||+|+||..+|.++|..+-+ |++.+.... .-..+.++++.... +
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 35678999999999999999999988732 222221111 11234455554332 1
Q ss_pred ---CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccc
Q 011374 299 ---NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPAL 375 (487)
Q Consensus 299 ---~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~AL 375 (487)
..-|++|+++|.+- ....+.||..++. ++...++|++|+.++.+-|.+
T Consensus 85 e~~~~KV~II~~ae~m~-------------------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI 135 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN-------------------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTI 135 (261)
T ss_pred hcCCCEEEEeccHhhhC-------------------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHh
Confidence 35799999999773 4566789999885 456789999999999999999
Q ss_pred cCCCceeeEEEeCCC
Q 011374 376 LRPGRMDVHIHMSYC 390 (487)
Q Consensus 376 lRpGRfd~~I~~~~p 390 (487)
++ |. ..+.++.+
T Consensus 136 ~S--RC-q~~~~~~~ 147 (261)
T PRK05818 136 LS--RC-VQYVVLSK 147 (261)
T ss_pred hh--he-eeeecCCh
Confidence 98 86 34777666
No 237
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=4.3e-05 Score=76.68 Aligned_cols=120 Identities=19% Similarity=0.256 Sum_probs=84.7
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcCC------------------------cEEEeecCc-ccChHHHHHHHHHcc--
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNF------------------------DVYDLELSS-VEGNKDLRQILIATE-- 298 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------------------~v~~l~~~~-~~~~~~l~~l~~~~~-- 298 (487)
..+.+|||+|| +||+++|.++|..+.+ |++.+.... .-.-+.++++.....
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34568999996 6899999999987732 233332221 123456666655432
Q ss_pred ----CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCcc
Q 011374 299 ----NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPA 374 (487)
Q Consensus 299 ----~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~A 374 (487)
...|++||++|.+. ....+.||..++. ++.+.++|++|+.++.|-|.
T Consensus 100 p~~~~~kV~II~~ad~m~-------------------------~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpT 150 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH-------------------------VNAANSLLKVIEE----PQSEIYIFLLTNDENKVLPT 150 (290)
T ss_pred cccCCcEEEEeehhhhcC-------------------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCchH
Confidence 35799999999773 4556789999986 35568999999999999999
Q ss_pred ccCCCceeeEEEeCCCCHHHHHHHHH
Q 011374 375 LLRPGRMDVHIHMSYCTPCGFKMLAS 400 (487)
Q Consensus 375 LlRpGRfd~~I~~~~p~~~~~~~l~~ 400 (487)
+++ |. .+|.|+. +.+....++.
T Consensus 151 I~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 151 IKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred HHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 998 76 5688876 5665555554
No 238
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.34 E-value=8.5e-06 Score=79.64 Aligned_cols=163 Identities=19% Similarity=0.260 Sum_probs=112.7
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-CCcE---------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDV--------- 276 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-~~~v--------- 276 (487)
...|.+|+.+.+..+....+..... . + --.++|+|||+|+||-|.+.++-+++ |..+
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~----~-------~--d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t 72 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSS----T-------G--DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT 72 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcc----c-------C--CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence 5578889998888777766643221 0 0 01369999999999999999999888 2111
Q ss_pred -------------------EEeecCccc--ChHHHHHHHHHccC-----------CeEEEEeccchhhhhhhHHHhhhcc
Q 011374 277 -------------------YDLELSSVE--GNKDLRQILIATEN-----------KSILVVEDIDCCLEMQDRLAKAKAA 324 (487)
Q Consensus 277 -------------------~~l~~~~~~--~~~~l~~l~~~~~~-----------~sIl~IDeiD~~~~~~~~~~~~~~~ 324 (487)
++++.++.+ +.--+++++....+ --+++|-|+|.+.
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT------------ 140 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT------------ 140 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh------------
Confidence 123333332 22234555554421 2599999999873
Q ss_pred cchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 325 IPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 325 ~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
+....+|-..|+...+.| -+|+.+|...++=+++.+ |. ..|.+|.|+.++.-.++...+.
T Consensus 141 -------------~dAQ~aLRRTMEkYs~~~----RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~ 200 (351)
T KOG2035|consen 141 -------------RDAQHALRRTMEKYSSNC----RLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLK 200 (351)
T ss_pred -------------HHHHHHHHHHHHHHhcCc----eEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHH
Confidence 233455777777765543 467788999999999987 65 5699999999999999999998
Q ss_pred cCCCCchHHH
Q 011374 405 ITEHPLFLEV 414 (487)
Q Consensus 405 ~~~~~l~~~i 414 (487)
.++..+..++
T Consensus 201 kE~l~lp~~~ 210 (351)
T KOG2035|consen 201 KEGLQLPKEL 210 (351)
T ss_pred HhcccCcHHH
Confidence 8777666554
No 239
>PF05729 NACHT: NACHT domain
Probab=98.34 E-value=3.8e-06 Score=76.01 Aligned_cols=133 Identities=18% Similarity=0.265 Sum_probs=72.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCC---------cEEEeecCcccChH---HHHHHH------------------HHcc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNF---------DVYDLELSSVEGNK---DLRQIL------------------IATE 298 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~---------~v~~l~~~~~~~~~---~l~~l~------------------~~~~ 298 (487)
|-++|+|+||+|||++++.++..+.. -++.+.+....... .+.+.+ ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 34789999999999999999987721 12233333332111 232222 1234
Q ss_pred CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCC-CCCccccC
Q 011374 299 NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKD-RLDPALLR 377 (487)
Q Consensus 299 ~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~-~LD~ALlR 377 (487)
.+.+|+||.+|.+....... ........|.+.+... ...+-.++|.+..+.. .+...+..
T Consensus 81 ~~~llilDglDE~~~~~~~~-----------------~~~~~~~~l~~l~~~~--~~~~~~liit~r~~~~~~~~~~~~~ 141 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQ-----------------ERQRLLDLLSQLLPQA--LPPGVKLIITSRPRAFPDLRRRLKQ 141 (166)
T ss_pred CceEEEEechHhcccchhhh-----------------HHHHHHHHHHHHhhhc--cCCCCeEEEEEcCChHHHHHHhcCC
Confidence 57899999999885411100 0011122222333331 0122234444333222 22222222
Q ss_pred CCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 378 PGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 378 pGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
...+++...+.++.++++++|+.
T Consensus 142 ----~~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 142 ----AQILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred ----CcEEEECCCCHHHHHHHHHHHhh
Confidence 15689999999999999999886
No 240
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.29 E-value=6.4e-06 Score=88.29 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=96.7
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChH
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNK 288 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~ 288 (487)
.+..++|.....+.+.+.+.... .....+|+.|++||||+++|+++.... +.+++.++|..+. ..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~-~~ 203 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS-----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIP-KD 203 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh-----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCC-HH
Confidence 35567777666666665554322 224569999999999999999999886 4689999999883 33
Q ss_pred HHHHHH-HH-----------------ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhc
Q 011374 289 DLRQIL-IA-----------------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDG 350 (487)
Q Consensus 289 ~l~~l~-~~-----------------~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg 350 (487)
.+...+ .. ...+..|||||||.+.. .....|+.+++.
T Consensus 204 ~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~-------------------------~~q~~L~~~l~~ 258 (469)
T PRK10923 204 LIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL-------------------------DVQTRLLRVLAD 258 (469)
T ss_pred HHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH-------------------------HHHHHHHHHHhc
Confidence 333333 21 22457899999998732 333456666653
Q ss_pred cc-cCCC------CceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHhhC
Q 011374 351 LW-SSCG------DERIIIFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCTP--CGFKMLASNYLG 404 (487)
Q Consensus 351 l~-s~~~------~~~iiI~TTN~~-------~~LD~ALlRpGRf-d~~I~~~~p~~--~~~~~l~~~~l~ 404 (487)
-. ...| -++-||+||+.. ..+.+.|.. |+ ..+|++|+... +++..|+..|+.
T Consensus 259 ~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~ 327 (469)
T PRK10923 259 GQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQ 327 (469)
T ss_pred CcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHH
Confidence 21 0001 123567777642 245566666 66 46677776643 456667777764
No 241
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.26 E-value=7.4e-06 Score=89.69 Aligned_cols=120 Identities=19% Similarity=0.163 Sum_probs=86.2
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCC--cEEEeecCcc----cChHHHHHHHHH-----------ccCCeEEEEeccchh
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELSSV----EGNKDLRQILIA-----------TENKSILVVEDIDCC 311 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~--~v~~l~~~~~----~~~~~l~~l~~~-----------~~~~sIl~IDeiD~~ 311 (487)
.|+||-|++|||||+++++++..+.. ++..+..+.- -+.-+|...+.. ...+.||||||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 58999999999999999999999864 7766554432 233344444422 234589999999644
Q ss_pred hhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhc---------cccCCCCceEEEEecCCC---CCCCccccCCC
Q 011374 312 LEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDG---------LWSSCGDERIIIFTTNHK---DRLDPALLRPG 379 (487)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg---------l~s~~~~~~iiI~TTN~~---~~LD~ALlRpG 379 (487)
...+++.|++.|+. .....+...++|+|-|.. ..|.++|+.
T Consensus 106 -------------------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD-- 158 (584)
T PRK13406 106 -------------------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD-- 158 (584)
T ss_pred -------------------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--
Confidence 46788999999863 222223345777775533 568999999
Q ss_pred ceeeEEEeCCCCHHHH
Q 011374 380 RMDVHIHMSYCTPCGF 395 (487)
Q Consensus 380 Rfd~~I~~~~p~~~~~ 395 (487)
||+++|.+++++..+.
T Consensus 159 Rf~l~v~v~~~~~~~~ 174 (584)
T PRK13406 159 RLAFHLDLDGLALRDA 174 (584)
T ss_pred heEEEEEcCCCChHHh
Confidence 9999999999987654
No 242
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.25 E-value=2e-05 Score=78.68 Aligned_cols=179 Identities=16% Similarity=0.207 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---------CCcEEEeecCcccChHHHHHH
Q 011374 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELSSVEGNKDLRQI 293 (487)
Q Consensus 223 K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---------~~~v~~l~~~~~~~~~~l~~l 293 (487)
-+++++.++..+..|. ..-..++||+|++|.|||++++..+... ..|++.+....--+...+...
T Consensus 42 A~~~L~~L~~Ll~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~ 115 (302)
T PF05621_consen 42 AKEALDRLEELLEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSA 115 (302)
T ss_pred HHHHHHHHHHHHhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHH
Confidence 3456677776665542 2233679999999999999999998765 246666665443233332211
Q ss_pred H-H-----------------------HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhh
Q 011374 294 L-I-----------------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFID 349 (487)
Q Consensus 294 ~-~-----------------------~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD 349 (487)
+ . ..-+.-+|+|||++.++.... .-...+||.+.
T Consensus 116 IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~----------------------~~qr~~Ln~LK 173 (302)
T PF05621_consen 116 ILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY----------------------RKQREFLNALK 173 (302)
T ss_pred HHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH----------------------HHHHHHHHHHH
Confidence 1 1 112456999999999864221 11233455554
Q ss_pred ccccCCCCceEEEEecCCCC--CCCccccCCCceeeEEEeCCCC-HHHHHHHHHHhhC---cCC-CCc-hHHH-HHHHhh
Q 011374 350 GLWSSCGDERIIIFTTNHKD--RLDPALLRPGRMDVHIHMSYCT-PCGFKMLASNYLG---ITE-HPL-FLEV-EELIEK 420 (487)
Q Consensus 350 gl~s~~~~~~iiI~TTN~~~--~LD~ALlRpGRfd~~I~~~~p~-~~~~~~l~~~~l~---~~~-~~l-~~~i-~~l~~~ 420 (487)
.+.....=.++.|+|-.-.. .-|+-+.+ ||+. +.+|.-. -+++..|+..+-. ... ..+ .+++ ..+...
T Consensus 174 ~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~ 250 (302)
T PF05621_consen 174 FLGNELQIPIVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHER 250 (302)
T ss_pred HHhhccCCCeEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Confidence 44322222344444443222 33777878 9976 5565543 3456666654432 211 112 2233 333444
Q ss_pred cCCCHHHHHHHH
Q 011374 421 VEVTPADVAEQL 432 (487)
Q Consensus 421 ~~~spa~i~~~l 432 (487)
.+-+.+++..++
T Consensus 251 s~G~iG~l~~ll 262 (302)
T PF05621_consen 251 SEGLIGELSRLL 262 (302)
T ss_pred cCCchHHHHHHH
Confidence 455555665555
No 243
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=2.6e-05 Score=81.16 Aligned_cols=200 Identities=17% Similarity=0.088 Sum_probs=122.2
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-----CCcEEEeecCccc
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELSSVE 285 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-----~~~v~~l~~~~~~ 285 (487)
..=+++.|.+..++.+.+++...+.. .-++++.+.|-||||||.+...+-..+ ....+.+++.++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~ 217 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLT 217 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecccc
Confidence 34567778877777777666555443 235678999999999999888665554 2345778888763
Q ss_pred ChHH---------------------HHHHHHHc----cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhh
Q 011374 286 GNKD---------------------LRQILIAT----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVT 340 (487)
Q Consensus 286 ~~~~---------------------l~~l~~~~----~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (487)
.... ..+.|... ...-|+|+||+|.++.. ++.+
T Consensus 218 ~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr----------------------~~~v 275 (529)
T KOG2227|consen 218 EASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITR----------------------SQTV 275 (529)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhc----------------------ccce
Confidence 2211 12222221 23579999999998631 1122
Q ss_pred HhhHHHHhhccccCCCCceEEEEecCCCCCCCccccC----CCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc-hH-HH
Q 011374 341 LSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLR----PGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL-FL-EV 414 (487)
Q Consensus 341 ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlR----pGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~-~i 414 (487)
+ -.++......+..+|+|+..|..+.-|..|.| -+--...+.|++++.++..+|++.-+....... .. .+
T Consensus 276 L----y~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Ai 351 (529)
T KOG2227|consen 276 L----YTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAI 351 (529)
T ss_pred e----eeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHH
Confidence 2 22332223344567888999988776655542 344466799999999999999998887543222 22 23
Q ss_pred HHHHhhcCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHhh
Q 011374 415 EELIEKVEVTPADVAEQLMRDEVPKIALSGLIQFLQIKKRE 455 (487)
Q Consensus 415 ~~l~~~~~~spa~i~~~l~~~~~~~~al~~l~~~l~~~~~~ 455 (487)
+-++..+.-. ++|-..||+-+..+++....+
T Consensus 352 e~~ArKvaa~----------SGDlRkaLdv~R~aiEI~E~e 382 (529)
T KOG2227|consen 352 ELCARKVAAP----------SGDLRKALDVCRRAIEIAEIE 382 (529)
T ss_pred HHHHHHhccC----------chhHHHHHHHHHHHHHHHHHH
Confidence 2222222222 356677776666555554433
No 244
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.24 E-value=1.7e-05 Score=84.40 Aligned_cols=153 Identities=19% Similarity=0.233 Sum_probs=90.3
Q ss_pred ccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChHH
Q 011374 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKD 289 (487)
Q Consensus 213 fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~~ 289 (487)
+..+++.....+.+.+.+.... .....++++|++||||+++|+++.... +.+++.++|..+.. ..
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~~ 205 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKIA-----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-NL 205 (445)
T ss_pred ccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-HH
Confidence 4456666555555555443221 224578999999999999999998776 46899999998743 33
Q ss_pred HHHHHHH------------------ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc
Q 011374 290 LRQILIA------------------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL 351 (487)
Q Consensus 290 l~~l~~~------------------~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl 351 (487)
+...+.. ...+.+||||||+.+. ......|+..++.-
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~-------------------------~~~q~~l~~~l~~~ 260 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP-------------------------LNLQAKLLRFLQER 260 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC-------------------------HHHHHHHHHHHhhC
Confidence 3333211 1346799999999873 23345566666432
Q ss_pred c-cCCC------CceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHhhC
Q 011374 352 W-SSCG------DERIIIFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCTP--CGFKMLASNYLG 404 (487)
Q Consensus 352 ~-s~~~------~~~iiI~TTN~~-------~~LD~ALlRpGRf-d~~I~~~~p~~--~~~~~l~~~~l~ 404 (487)
. ...| -++-||+||+.. ..+.+.|.. |+ ...|++|+... +++..|++.|+.
T Consensus 261 ~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~lPpLr~R~~Di~~l~~~~l~ 328 (445)
T TIGR02915 261 VIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIAEISITIPPLRSRDGDAVLLANAFLE 328 (445)
T ss_pred eEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--HhccceecCCCchhchhhHHHHHHHHHH
Confidence 1 1111 134566776653 334455543 44 34555555532 344456666553
No 245
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.23 E-value=1.1e-05 Score=86.38 Aligned_cols=152 Identities=17% Similarity=0.214 Sum_probs=95.8
Q ss_pred cccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChHHH
Q 011374 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDL 290 (487)
Q Consensus 214 d~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~~l 290 (487)
..+++.....+++...+.... .....+++.|.+||||+++++++.... +.+++.++|..+. ...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a-----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~-~~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS-----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIP-KDLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh-----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCC-HHHH
Confidence 346676666666666554322 223568999999999999999998875 4689999999873 3333
Q ss_pred HHHH-H-----------------HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc
Q 011374 291 RQIL-I-----------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW 352 (487)
Q Consensus 291 ~~l~-~-----------------~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~ 352 (487)
...+ . ....++.|||||||.+-. .....|+.+++.-.
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~-------------------------~~q~~ll~~l~~~~ 256 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL-------------------------DAQTRLLRVLADGE 256 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH-------------------------HHHHHHHHHHhcCc
Confidence 3333 1 122367899999998732 33455666665321
Q ss_pred -cCCC------CceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCC--HHHHHHHHHHhhC
Q 011374 353 -SSCG------DERIIIFTTNHK-------DRLDPALLRPGRMD-VHIHMSYCT--PCGFKMLASNYLG 404 (487)
Q Consensus 353 -s~~~------~~~iiI~TTN~~-------~~LD~ALlRpGRfd-~~I~~~~p~--~~~~~~l~~~~l~ 404 (487)
...+ -++-||+||+.. ..+.+.|.. |+. .+|++|+.. .+++..|+..|+.
T Consensus 257 ~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~ 323 (463)
T TIGR01818 257 FYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLA 323 (463)
T ss_pred EEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHH
Confidence 1101 123566666643 234445554 554 488888877 5677788877764
No 246
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.21 E-value=2e-05 Score=78.51 Aligned_cols=147 Identities=23% Similarity=0.228 Sum_probs=77.1
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHH--c--CCc-EEEeecCcccCh------------------------HHHHHHHHHc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANY--L--NFD-VYDLELSSVEGN------------------------KDLRQILIAT 297 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~--l--~~~-v~~l~~~~~~~~------------------------~~l~~l~~~~ 297 (487)
..+-+.|+|++|+|||+||..+++. . .++ ++.++++...+. ..+...+...
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 4566889999999999999999977 3 232 233444332111 1112222211
Q ss_pred --cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccc
Q 011374 298 --ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPAL 375 (487)
Q Consensus 298 --~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~AL 375 (487)
..+++|||||++... .+..+...+-.. +.+.-||+||....-. ...
T Consensus 98 L~~~~~LlVlDdv~~~~---------------------------~~~~l~~~~~~~----~~~~kilvTTR~~~v~-~~~ 145 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEE---------------------------DLEELREPLPSF----SSGSKILVTTRDRSVA-GSL 145 (287)
T ss_dssp HCCTSEEEEEEEE-SHH---------------------------HH-------HCH----HSS-EEEEEESCGGGG-TTH
T ss_pred hccccceeeeeeecccc---------------------------cccccccccccc----cccccccccccccccc-ccc
Confidence 348999999998542 111122222111 1123455666543211 111
Q ss_pred cCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC----CCchHHHHHHHhhcCCCHHHH
Q 011374 376 LRPGRMDVHIHMSYCTPCGFKMLASNYLGITE----HPLFLEVEELIEKVEVTPADV 428 (487)
Q Consensus 376 lRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~----~~l~~~i~~l~~~~~~spa~i 428 (487)
+.-+..++++..+.++..+++..+..... ..+.+...+++...+..|-.|
T Consensus 146 ---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal 199 (287)
T PF00931_consen 146 ---GGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLAL 199 (287)
T ss_dssp ---HSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHH
T ss_pred ---cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 11157899999999999999999876543 223334455555555555544
No 247
>PHA02774 E1; Provisional
Probab=98.20 E-value=9.6e-06 Score=87.28 Aligned_cols=58 Identities=28% Similarity=0.448 Sum_probs=43.0
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEE-eecCcccChHHHHHHHHHccCCeEEEEecc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD-LELSSVEGNKDLRQILIATENKSILVVEDI 308 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~-l~~~~~~~~~~l~~l~~~~~~~sIl~IDei 308 (487)
|.|.++.++||||||||||+++.+|++.++..++. ++..+ .-.+......-|++|||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s-------~FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS-------HFWLQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc-------ccccchhccCCEEEEecC
Confidence 45556789999999999999999999999766654 44321 112444455679999999
No 248
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.20 E-value=1.3e-05 Score=85.54 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=58.8
Q ss_pred ccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChHH
Q 011374 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKD 289 (487)
Q Consensus 213 fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~~ 289 (487)
+..+++....-..+.+.+..... ....+|++|++||||+++|+++.... +.+++.++|..+.. ..
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~ 209 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIAL-----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SL 209 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcC-----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HH
Confidence 33455554444555555443322 23569999999999999999998765 47899999998743 33
Q ss_pred HHHH-HHH-----------------ccCCeEEEEeccchhh
Q 011374 290 LRQI-LIA-----------------TENKSILVVEDIDCCL 312 (487)
Q Consensus 290 l~~l-~~~-----------------~~~~sIl~IDeiD~~~ 312 (487)
+... |.. .....+|||||||.+.
T Consensus 210 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~ 250 (457)
T PRK11361 210 LESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMP 250 (457)
T ss_pred HHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCC
Confidence 3332 221 1235799999999873
No 249
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=9.9e-06 Score=91.20 Aligned_cols=150 Identities=17% Similarity=0.246 Sum_probs=98.5
Q ss_pred ccccccC-HHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----------CCcEEEeec
Q 011374 213 FDTLAMD-FDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLEL 281 (487)
Q Consensus 213 fd~l~g~-~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----------~~~v~~l~~ 281 (487)
++.++|. ++..+++++.|. +.-+++-+|.|.||+|||.++.-+|+.. +..++.+++
T Consensus 185 ldPvigr~deeirRvi~iL~-------------Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILS-------------RKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHh-------------ccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 6788886 666666666554 3334788999999999999999999887 345566666
Q ss_pred Cccc--------ChHHHHHHHHH---ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhc
Q 011374 282 SSVE--------GNKDLRQILIA---TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDG 350 (487)
Q Consensus 282 ~~~~--------~~~~l~~l~~~---~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg 350 (487)
..+. -+..++.++.. ...+.||||||++.+.+.... ....-...+|..+-+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~------------------~~~~d~~nlLkp~L~ 313 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN------------------YGAIDAANLLKPLLA 313 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc------------------chHHHHHHhhHHHHh
Confidence 5441 24556666654 346789999999999752211 112233334443332
Q ss_pred cccCCCCceEEEEecCCC-----CCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011374 351 LWSSCGDERIIIFTTNHK-----DRLDPALLRPGRMDVHIHMSYCTPCGFKMLASN 401 (487)
Q Consensus 351 l~s~~~~~~iiI~TTN~~-----~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~ 401 (487)
. ++..+|+||..- -.-||||-| ||+. +.++.|+.+....++..
T Consensus 314 r-----g~l~~IGatT~e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~~ 361 (898)
T KOG1051|consen 314 R-----GGLWCIGATTLETYRKCIEKDPALER--RWQL-VLVPIPSVENLSLILPG 361 (898)
T ss_pred c-----CCeEEEecccHHHHHHHHhhCcchhh--Ccce-eEeccCcccchhhhhhh
Confidence 1 226677755532 234999999 9986 77899987765545543
No 250
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.18 E-value=1.4e-05 Score=90.49 Aligned_cols=178 Identities=21% Similarity=0.253 Sum_probs=116.7
Q ss_pred CCceecccCCCCCccccccCHHHHHHHHHHHHHHHhc-HHHHHHhcCCC-cc-cceeeCCCCCcHHHHHHHHHHHcCCcE
Q 011374 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKR-KEFYKRVGKAW-KR-GYLLYGPPGTGKSSLIAAMANYLNFDV 276 (487)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~-~~~y~~~g~~~-~r-g~LL~GPPGtGKTsLa~alA~~l~~~v 276 (487)
..|.. ...|.....+.+....-..+.+.+..+-+. +.-|...+... .. ..|++||||.|||+.+.+.|..+++.+
T Consensus 308 ~~~~~--k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v 385 (871)
T KOG1968|consen 308 AGWTE--KYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKV 385 (871)
T ss_pred ccccc--ccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccce
Confidence 34654 456667788888777766777777665221 11222222111 12 369999999999999999999999999
Q ss_pred EEeecCcccChHHHHHHHHHcc--------------------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCC
Q 011374 277 YDLELSSVEGNKDLRQILIATE--------------------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (487)
Q Consensus 277 ~~l~~~~~~~~~~l~~l~~~~~--------------------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (487)
+..|.+...+...+.+.+..+. ...||++||+|.+.+ .+|+.
T Consensus 386 ~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dRg~----------------- 447 (871)
T KOG1968|consen 386 VEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDRGG----------------- 447 (871)
T ss_pred eecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhhhh-----------------
Confidence 9999998877666655553321 124999999998864 22221
Q ss_pred chhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCC
Q 011374 337 NRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHP 409 (487)
Q Consensus 337 ~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~ 409 (487)
-..++.+.. . ..+-+|+|+|.........+. |-+.-|+|+.|+.+++..-+..++..+...
T Consensus 448 -v~~l~~l~~---k------s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~k 508 (871)
T KOG1968|consen 448 -VSKLSSLCK---K------SSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIK 508 (871)
T ss_pred -HHHHHHHHH---h------ccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhccccee
Confidence 112333333 1 226688999987776663333 434679999999999887777777655433
No 251
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.16 E-value=4e-05 Score=91.01 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=42.9
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
...+..++.++|.++..+++...+. .+....+-+-++||+|+||||||+++++.+..
T Consensus 177 ~~~~~~~~~~vG~~~~l~~l~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 177 LTPSNDFEDFVGIEDHIAKMSSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred cccCcccccccchHHHHHHHHHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 3456678999998888777765542 12234567889999999999999999988743
No 252
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.12 E-value=7.1e-05 Score=79.54 Aligned_cols=124 Identities=19% Similarity=0.191 Sum_probs=86.4
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCc
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~ 283 (487)
..++-+|++++|....-.++++....+- +-.-.+||.|.+||||..+|++|-+.. +-||+.+||..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A-----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIA-----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhc-----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 4456689999999888888777666443 335679999999999999999998877 67999999999
Q ss_pred ccChHHHH-HHHH------------------HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhH
Q 011374 284 VEGNKDLR-QILI------------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGL 344 (487)
Q Consensus 284 ~~~~~~l~-~l~~------------------~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 344 (487)
+- +.-|. ++|- +..+..-||+|||..+ .......|
T Consensus 307 iP-e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem-------------------------pl~LQaKL 360 (560)
T COG3829 307 IP-ETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM-------------------------PLPLQAKL 360 (560)
T ss_pred CC-HHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC-------------------------CHHHHHHH
Confidence 82 22222 2221 1224578999999755 24556667
Q ss_pred HHHhhcc--cc-----CCCCceEEEEecCC
Q 011374 345 LNFIDGL--WS-----SCGDERIIIFTTNH 367 (487)
Q Consensus 345 L~~lDgl--~s-----~~~~~~iiI~TTN~ 367 (487)
|..+..- +. .-.-++=||+|||.
T Consensus 361 LRVLQEkei~rvG~t~~~~vDVRIIAATN~ 390 (560)
T COG3829 361 LRVLQEKEIERVGGTKPIPVDVRIIAATNR 390 (560)
T ss_pred HHHHhhceEEecCCCCceeeEEEEEeccCc
Confidence 7777421 11 11124678999996
No 253
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.11 E-value=3.2e-05 Score=69.44 Aligned_cols=30 Identities=30% Similarity=0.562 Sum_probs=24.1
Q ss_pred ceeeCCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011374 251 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~ 280 (487)
++|+||||+|||+++..++..+ +.+++.++
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 6899999999999999999887 34454443
No 254
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.11 E-value=1.8e-05 Score=91.64 Aligned_cols=126 Identities=23% Similarity=0.322 Sum_probs=92.6
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHH--------------------HHccCCeEEEEec
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQIL--------------------IATENKSILVVED 307 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~--------------------~~~~~~sIl~IDe 307 (487)
.+++||-|.||+|||+|+.|+|+..|-.++.+++++- .+|..+| ..+....-+++||
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQ---TdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDE 1619 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQ---TDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDE 1619 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeecccc---chHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeeh
Confidence 4689999999999999999999999999999999874 3344443 3445667889999
Q ss_pred cchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc----------cCCCCceEEEEecCCC------CCC
Q 011374 308 IDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW----------SSCGDERIIIFTTNHK------DRL 371 (487)
Q Consensus 308 iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~----------s~~~~~~iiI~TTN~~------~~L 371 (487)
+... ++.++.||-.++|.-. -.|-.+..|++|-|.- ..|
T Consensus 1620 iNLa-------------------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgL 1674 (4600)
T COG5271 1620 INLA-------------------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGL 1674 (4600)
T ss_pred hhhh-------------------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccC
Confidence 9643 3566677776666321 1122234555666643 468
Q ss_pred CccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 372 DPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 372 D~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
+..++. ||- +|+|...+.+....|+...+.
T Consensus 1675 PkSF~n--RFs-vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1675 PKSFLN--RFS-VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred CHHHhh--hhh-eEEecccccchHHHHHHhhCC
Confidence 999998 995 599999999998888887765
No 255
>PHA00729 NTP-binding motif containing protein
Probab=98.09 E-value=4e-06 Score=80.75 Aligned_cols=63 Identities=13% Similarity=0.233 Sum_probs=39.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCc----------ccChHHHHHHHHHc----cCCeEEEEeccchh
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS----------VEGNKDLRQILIAT----ENKSILVVEDIDCC 311 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~----------~~~~~~l~~l~~~~----~~~sIl~IDeiD~~ 311 (487)
..++|+|+||||||+||.+||+.++..+..+.... +.+...+...+..+ .+..+|+|||+..-
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~ 94 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIW 94 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchh
Confidence 36999999999999999999999864443321111 11223333333222 22368999997543
No 256
>PRK15115 response regulator GlrR; Provisional
Probab=98.06 E-value=2.5e-05 Score=83.02 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=47.9
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChHHHHHH-HH-----------------HccCCeEEEEe
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDLRQI-LI-----------------ATENKSILVVE 306 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~~l~~l-~~-----------------~~~~~sIl~ID 306 (487)
...++++|++||||+++|+++.... +.+++.++|..+. ...+... |. .......||||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~-~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALP-EQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCC-HHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEE
Confidence 3568999999999999999998875 4789999999873 2333332 21 12345799999
Q ss_pred ccchhh
Q 011374 307 DIDCCL 312 (487)
Q Consensus 307 eiD~~~ 312 (487)
|||.+.
T Consensus 236 ~i~~l~ 241 (444)
T PRK15115 236 EIGDMP 241 (444)
T ss_pred ccccCC
Confidence 999873
No 257
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.04 E-value=2.7e-05 Score=84.08 Aligned_cols=161 Identities=24% Similarity=0.297 Sum_probs=93.5
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhc-CCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCc--c------c
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS--V------E 285 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g-~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~--~------~ 285 (487)
+|.+.+++|+-++-.| |=.....++..| ..---++||+|.||||||-|.+.+++.+..-+|.=--.+ + .
T Consensus 430 sIye~edvKkglLLqL--fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL--FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHH--hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 3556777777775332 333333333333 111235999999999999999999999866665321111 0 1
Q ss_pred ChHHHHHHHHHc-----cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhh---------cc
Q 011374 286 GNKDLRQILIAT-----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFID---------GL 351 (487)
Q Consensus 286 ~~~~l~~l~~~~-----~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD---------gl 351 (487)
...+-++++.+. ....|-+|||+|.+-+ .+-+.|+..|+ |+
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d-------------------------StrSvLhEvMEQQTvSIAKAGI 562 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSD-------------------------STRSVLHEVMEQQTLSIAKAGI 562 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhH-------------------------HHHHHHHHHHHHhhhhHhhcce
Confidence 111223333322 4578999999998832 23344444443 33
Q ss_pred ccCCCCceEEEEecCCCC-------------CCCccccCCCceeeEEE-eCCCCHHHHHHHHHHhhC
Q 011374 352 WSSCGDERIIIFTTNHKD-------------RLDPALLRPGRMDVHIH-MSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 352 ~s~~~~~~iiI~TTN~~~-------------~LD~ALlRpGRfd~~I~-~~~p~~~~~~~l~~~~l~ 404 (487)
...-+-.--|+++.|..+ .|+|.|++ |||...- +..|++..=+.|+.+..+
T Consensus 563 I~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 563 IASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred eeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHH
Confidence 222222234778888431 37899999 9998654 477777655566655443
No 258
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.02 E-value=2.7e-05 Score=76.85 Aligned_cols=58 Identities=22% Similarity=0.201 Sum_probs=43.9
Q ss_pred eEEEEecCC------------CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHh
Q 011374 359 RIIIFTTNH------------KDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE 419 (487)
Q Consensus 359 ~iiI~TTN~------------~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~ 419 (487)
-++|++||+ |..++-.|+. |+ ..|...+.+.++.+.|++.-+..++..+.++...++-
T Consensus 318 PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt 387 (454)
T KOG2680|consen 318 PIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLT 387 (454)
T ss_pred cEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHH
Confidence 477777775 5678888887 87 5688888889999999998887777777666555543
No 259
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=97.97 E-value=0.00037 Score=65.35 Aligned_cols=138 Identities=9% Similarity=0.120 Sum_probs=96.3
Q ss_pred eEEEEeecCCCcCcchhHHHHHHHhCCCCCcc-ccceeeeccC----------------------CCCceEEeccCCceE
Q 011374 59 LTLLIEEYDDGLNQNKLFKAAKLYLEPKIPPY-VKRIKLNLAK----------------------KETNVSLSLEKNEEI 115 (487)
Q Consensus 59 ~ti~I~e~~~~~~~n~~y~a~~~YL~~~~~~~-~~rl~~~~~~----------------------~~~~~~~~~~~~~~~ 115 (487)
.|+.|+. .+++|+.+-.+|+...... ++++.+.... +.+.+.+.|..| ..
T Consensus 27 ~sv~I~~------~D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G-~h 99 (187)
T PF08740_consen 27 SSVEIPS------DDEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG-TH 99 (187)
T ss_pred EEEEECC------CCHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-CE
Confidence 3555654 3689999999998886544 5666665421 356888999999 77
Q ss_pred EeeecCeEEEEEEEeeCCCCcccccccccccCCcceEEEEEeCCCChhHHHHhhhhHHHhhhhhhhhccceEEEEeecCC
Q 011374 116 VDVFNGVQLKWKFESKPDPEREVHNNQNYLVKSNITFFALRFHKKHKDTVLRTYIPHILKKSKELSKKKKTLKLFTLFPY 195 (487)
Q Consensus 116 ~d~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 195 (487)
...|+| .|..+.+...+.... ...+.+.++++|++...+++ +|..+|.+..+.+. +.++..+.||...+.
T Consensus 100 ~F~y~G---~~~~~~R~~~~~~~~----~~~~~~~e~l~l~~lg~s~~-~l~~ll~ear~~~~--~~~~~~t~Iy~~~~~ 169 (187)
T PF08740_consen 100 WFWYKG---RWFWFSRQRESNSYN----SWTGAPDETLTLSCLGRSPK-PLKDLLEEAREYYL--KKQKGKTTIYRADGS 169 (187)
T ss_pred EEEECC---EEEEEEEEecccccc----ccCCCCceEEEEEEecCCHH-HHHHHHHHHHHHHH--HhcCCcEEEEeCCCC
Confidence 788999 688888776433222 11245689999999999875 66676666555443 344556789988532
Q ss_pred CCCCCCceecccCCCCCcccc
Q 011374 196 RGDTEIWQSVNLDHPATFDTL 216 (487)
Q Consensus 196 ~~~~~~w~~~~~~~p~~fd~l 216 (487)
. ..|..+...+++++++|
T Consensus 170 ~---~~W~~~~~r~~RplsTV 187 (187)
T PF08740_consen 170 E---YRWRRVASRPKRPLSTV 187 (187)
T ss_pred C---CCCcCCCCcCCCCCCCC
Confidence 1 16999888888999986
No 260
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.97 E-value=1.2e-05 Score=86.47 Aligned_cols=67 Identities=21% Similarity=0.288 Sum_probs=51.2
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-CCcEEEeec
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLEL 281 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-~~~v~~l~~ 281 (487)
..-.-|+++.|.++++++|++.+.....+ + ...++.++|.||||+|||+|+++||+.+ .+++|.+..
T Consensus 70 ~ry~fF~d~yGlee~ieriv~~l~~Aa~g------l-~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 70 KRYPAFEEFYGMEEAIEQIVSYFRHAAQG------L-EEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred ccccchhcccCcHHHHHHHHHHHHHHHHh------c-CCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 34456999999999999998877543332 1 1234578899999999999999999988 467777654
No 261
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.96 E-value=5.2e-06 Score=71.74 Aligned_cols=31 Identities=39% Similarity=0.741 Sum_probs=27.6
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~ 281 (487)
|++.||||+||||+++.+|+.++++++.++-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999988876653
No 262
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.96 E-value=4.6e-06 Score=85.55 Aligned_cols=129 Identities=23% Similarity=0.243 Sum_probs=73.1
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCc----c-----cC----hHHHHHHHHHccCCeEEEEeccchhhhhhh
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS----V-----EG----NKDLRQILIATENKSILVVEDIDCCLEMQD 316 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~----~-----~~----~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~ 316 (487)
++||.|.||||||.|.+.+++.....+|.--.+. + .+ +-.+..-..-...+.|++|||+|.+-.
T Consensus 59 hiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~--- 135 (331)
T PF00493_consen 59 HILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE--- 135 (331)
T ss_dssp -EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C---
T ss_pred ceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccc---
Confidence 5999999999999999998877766665331111 1 11 101111011124679999999997732
Q ss_pred HHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc---------ccCCCCceEEEEecCCCC-------------CCCcc
Q 011374 317 RLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL---------WSSCGDERIIIFTTNHKD-------------RLDPA 374 (487)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl---------~s~~~~~~iiI~TTN~~~-------------~LD~A 374 (487)
.....|+..|+.- ...-+-..-|++++|... .+++.
T Consensus 136 ----------------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~ 193 (331)
T PF00493_consen 136 ----------------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPP 193 (331)
T ss_dssp ----------------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CC
T ss_pred ----------------------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchh
Confidence 2345566666532 111112246888988664 47889
Q ss_pred ccCCCceeeEEEe-CCCCHHHHHHHHHHhhCc
Q 011374 375 LLRPGRMDVHIHM-SYCTPCGFKMLASNYLGI 405 (487)
Q Consensus 375 LlRpGRfd~~I~~-~~p~~~~~~~l~~~~l~~ 405 (487)
|+. |||..+.+ ..++.+.=+.++++.+..
T Consensus 194 LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 194 LLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp CHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred hHh--hcCEEEEeccccccccccccceEEEec
Confidence 999 99998765 667777667777766654
No 263
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.95 E-value=1.1e-05 Score=81.42 Aligned_cols=94 Identities=19% Similarity=0.287 Sum_probs=59.5
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcCCcE-EEeecCcc--cChHHHHH----------HHHHc-cCCeEEEEeccchh
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDV-YDLELSSV--EGNKDLRQ----------ILIAT-ENKSILVVEDIDCC 311 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v-~~l~~~~~--~~~~~l~~----------l~~~~-~~~sIl~IDeiD~~ 311 (487)
.+++|+.||||-|+|||.|....-..+..+- ..+-...+ ..-.++.. +-... .+--||+|||+...
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~Vt 142 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEVT 142 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeeec
Confidence 4678999999999999999998887774432 11111111 00111111 11111 23469999999743
Q ss_pred hhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCC
Q 011374 312 LEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNH 367 (487)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~ 367 (487)
+-.....++.|++.|=. .++++|+|+|.
T Consensus 143 ----------------------DI~DAMiL~rL~~~Lf~------~GV~lvaTSN~ 170 (367)
T COG1485 143 ----------------------DIADAMILGRLLEALFA------RGVVLVATSNT 170 (367)
T ss_pred ----------------------ChHHHHHHHHHHHHHHH------CCcEEEEeCCC
Confidence 23346788888887753 45999999995
No 264
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.91 E-value=8.7e-05 Score=78.73 Aligned_cols=85 Identities=14% Similarity=0.184 Sum_probs=58.0
Q ss_pred cccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChHHHHH
Q 011374 216 LAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDLRQ 292 (487)
Q Consensus 216 l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~~l~~ 292 (487)
+++.....+.+++.+..+. .....++++|.+||||+++++++.... +.+++.++|..+. ...+..
T Consensus 141 lig~s~~~~~~~~~i~~~~-----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~-~~~~~~ 208 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVA-----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALN-ESLLES 208 (441)
T ss_pred eEecCHHHHHHHHHHhhcc-----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCC-HHHHHH
Confidence 4455555555555553221 234679999999999999999998765 4789999999874 344444
Q ss_pred HHHH------------------ccCCeEEEEeccchhh
Q 011374 293 ILIA------------------TENKSILVVEDIDCCL 312 (487)
Q Consensus 293 l~~~------------------~~~~sIl~IDeiD~~~ 312 (487)
.+.. ...+++|||||||.+.
T Consensus 209 ~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~ 246 (441)
T PRK10365 209 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 (441)
T ss_pred HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCC
Confidence 3311 1246789999999884
No 265
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.89 E-value=2e-05 Score=75.96 Aligned_cols=63 Identities=25% Similarity=0.434 Sum_probs=38.9
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCc----------------ccChHHHHHHHHHc----cCCeEEEEecc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS----------------VEGNKDLRQILIAT----ENKSILVVEDI 308 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~----------------~~~~~~l~~l~~~~----~~~sIl~IDei 308 (487)
.-+|+||+||+|||++|+.+++. .-++..+.+. -...+.+.+.+... ....+||||.|
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDsI 90 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDNI 90 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEecH
Confidence 45999999999999999999842 1222222211 01123343333322 33579999999
Q ss_pred chhhh
Q 011374 309 DCCLE 313 (487)
Q Consensus 309 D~~~~ 313 (487)
+.+..
T Consensus 91 ~~l~~ 95 (220)
T TIGR01618 91 SALQN 95 (220)
T ss_pred HHHHH
Confidence 98743
No 266
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.87 E-value=4e-05 Score=75.84 Aligned_cols=89 Identities=16% Similarity=0.255 Sum_probs=59.4
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCccc--ceeeCCCCCcHHHHHHHHHHHcCC-----cEEE-----eecC
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRG--YLLYGPPGTGKSSLIAAMANYLNF-----DVYD-----LELS 282 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg--~LL~GPPGtGKTsLa~alA~~l~~-----~v~~-----l~~~ 282 (487)
.|.|+.-+++.|+..+..|+.++. +++. +=|||+|||||+.+++.||+.+-. +++. .++-
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~--------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN--------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFP 154 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC--------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCC
Confidence 578999999999999998887643 3333 347999999999999999998722 2211 1111
Q ss_pred cccC----hHHHHHHHHH---ccCCeEEEEeccchh
Q 011374 283 SVEG----NKDLRQILIA---TENKSILVVEDIDCC 311 (487)
Q Consensus 283 ~~~~----~~~l~~l~~~---~~~~sIl~IDeiD~~ 311 (487)
.-.. ..+|+..+.. ...++|.++||+|.+
T Consensus 155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 1000 1223333322 246899999999987
No 267
>PRK07261 topology modulation protein; Provisional
Probab=97.86 E-value=3e-05 Score=71.91 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=27.9
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~ 281 (487)
+++.|+||+|||||++.|+..++.+++.+|.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 7899999999999999999999998876653
No 268
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.85 E-value=7.1e-05 Score=71.27 Aligned_cols=40 Identities=25% Similarity=0.411 Sum_probs=32.1
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~ 283 (487)
|.+.+.-++++||||||||+++..+|... +..++.++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 56677779999999999999999887644 56677777764
No 269
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.84 E-value=9.4e-05 Score=67.08 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=22.0
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.-+.+.||||+|||+++.-+|+.|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 358899999999999999999888
No 270
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.83 E-value=1.5e-05 Score=73.08 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=30.5
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
.+..++|+||||||||++++++|..+++++++.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4568999999999999999999999999998654
No 271
>PF14516 AAA_35: AAA-like domain
Probab=97.80 E-value=0.00078 Score=69.15 Aligned_cols=133 Identities=16% Similarity=0.224 Sum_probs=77.3
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccC-----hH-------------------------------
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG-----NK------------------------------- 288 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~-----~~------------------------------- 288 (487)
+.-+.++||..+|||||...+.+.+ ++..+.+++..+.. ..
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4567899999999999999887766 77777787776521 11
Q ss_pred -HHHHH-----HHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCC------
Q 011374 289 -DLRQI-----LIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCG------ 356 (487)
Q Consensus 289 -~l~~l-----~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~------ 356 (487)
..... +.....|-||+|||||.+++.. .....|+..+-.....+.
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-----------------------~~~~dF~~~LR~~~~~~~~~~~~~ 167 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-----------------------QIADDFFGLLRSWYEQRKNNPIWQ 167 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCc-----------------------chHHHHHHHHHHHHHhcccCcccc
Confidence 11111 1223468899999999997411 112223333322211110
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011374 357 DERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYL 403 (487)
Q Consensus 357 ~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l 403 (487)
.=+++++-+..+......=..|=-+...|.++.-+.++...|++.|-
T Consensus 168 ~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~ 214 (331)
T PF14516_consen 168 KLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG 214 (331)
T ss_pred eEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh
Confidence 11233333322221111112444556689999999999999998864
No 272
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.80 E-value=0.00073 Score=70.54 Aligned_cols=92 Identities=23% Similarity=0.254 Sum_probs=60.4
Q ss_pred eEEEEecC--CCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC---------------------CCchHHHH
Q 011374 359 RIIIFTTN--HKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITE---------------------HPLFLEVE 415 (487)
Q Consensus 359 ~iiI~TTN--~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~---------------------~~l~~~i~ 415 (487)
.+|+.|++ ....|..|| |+|.-..|.++.++++.-+..+...|.... .....++.
T Consensus 185 HVIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld 262 (431)
T PF10443_consen 185 HVIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELD 262 (431)
T ss_pred EEEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHH
Confidence 34444444 224566676 447778999999999999999988886531 13456777
Q ss_pred HHHhhcCCCHHHHHHHHh--c-cCCHHHHHHHHHHHHHHH
Q 011374 416 ELIEKVEVTPADVAEQLM--R-DEVPKIALSGLIQFLQIK 452 (487)
Q Consensus 416 ~l~~~~~~spa~i~~~l~--~-~~~~~~al~~l~~~l~~~ 452 (487)
..++..+.---|+.-+.. + ...|+.|++.+++.-...
T Consensus 263 ~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~qsa~e 302 (431)
T PF10443_consen 263 ECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQSASE 302 (431)
T ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 777766544445544433 3 358999998887755443
No 273
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.76 E-value=9.9e-05 Score=69.76 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=59.0
Q ss_pred ceeeCCCCCcHHHHHHHH-HHH-c--CCcEEEeecCccc-----C---------------------hHHHHHHHHHccCC
Q 011374 251 YLLYGPPGTGKSSLIAAM-ANY-L--NFDVYDLELSSVE-----G---------------------NKDLRQILIATENK 300 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~al-A~~-l--~~~v~~l~~~~~~-----~---------------------~~~l~~l~~~~~~~ 300 (487)
++++|.||+|||+.|-.. ... + |.+++. ++..+. . ...+. .....+..
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPD-DWRKLPKG 80 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHH-HHTTSGTT
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhh-hhcccCCC
Confidence 688999999999987655 332 2 566654 433221 0 01111 11223468
Q ss_pred eEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCc
Q 011374 301 SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGR 380 (487)
Q Consensus 301 sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGR 380 (487)
+||||||+...++.+.... ......++++... .-.+.-||++|-++..||+.+++ +
T Consensus 81 ~liviDEa~~~~~~r~~~~-------------------~~~~~~~~~l~~h---Rh~g~diiliTQ~~~~id~~ir~--l 136 (193)
T PF05707_consen 81 SLIVIDEAQNFFPSRSWKG-------------------KKVPEIIEFLAQH---RHYGWDIILITQSPSQIDKFIRD--L 136 (193)
T ss_dssp -EEEETTGGGTSB---T-T-----------------------HHHHGGGGC---CCTT-EEEEEES-GGGB-HHHHC--C
T ss_pred cEEEEECChhhcCCCcccc-------------------ccchHHHHHHHHh---CcCCcEEEEEeCCHHHHhHHHHH--H
Confidence 9999999999886433210 0011222333322 22357889999999999999987 8
Q ss_pred eeeEEEeCCC
Q 011374 381 MDVHIHMSYC 390 (487)
Q Consensus 381 fd~~I~~~~p 390 (487)
.+.++++..+
T Consensus 137 ve~~~~~~k~ 146 (193)
T PF05707_consen 137 VEYHYHCRKL 146 (193)
T ss_dssp EEEEEEEEE-
T ss_pred HheEEEEEee
Confidence 8888887654
No 274
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.76 E-value=0.00035 Score=73.06 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=38.3
Q ss_pred cccceeeCCCCCcHHHHHHHHHHH--c--CCcEEEeecCcccChHHHHHHHHHccCCeEEEEeccchh
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANY--L--NFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCC 311 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~--l--~~~v~~l~~~~~~~~~~l~~l~~~~~~~sIl~IDeiD~~ 311 (487)
..++++.||||||||+++.+++.+ + | .......+-.+ .-...+.......+|+|||+..+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~-L~~~~lg~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYN-ISTRQIGLVGRWDVVAFDEVATL 272 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHH-HHHHHHhhhccCCEEEEEcCCCC
Confidence 458999999999999999999877 2 3 11111111000 00133344456789999999875
No 275
>PRK08118 topology modulation protein; Reviewed
Probab=97.76 E-value=4.5e-05 Score=70.46 Aligned_cols=32 Identities=34% Similarity=0.532 Sum_probs=29.6
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~ 281 (487)
.+++.||||+||||||+.||+.++.+++.+|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999998874
No 276
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.74 E-value=0.00018 Score=76.24 Aligned_cols=153 Identities=17% Similarity=0.192 Sum_probs=96.8
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC---CcEEEeecCcccChH
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSSVEGNK 288 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~---~~v~~l~~~~~~~~~ 288 (487)
.+..++|.....+++.+.+...-. -.-.+|++|++||||-.+|++|-.... -|++.+||..+-. .
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~-----------s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~-~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAP-----------SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE-N 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH-H
Confidence 466788888888888777764433 245799999999999999999988874 5999999999842 2
Q ss_pred HHH-HHHHH-----------------ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhc
Q 011374 289 DLR-QILIA-----------------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDG 350 (487)
Q Consensus 289 ~l~-~l~~~-----------------~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg 350 (487)
.+. ++|-. ......||||||..+. ..+...||..+..
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mp-------------------------l~~Q~kLLRvLqe 261 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMP-------------------------LELQVKLLRVLQE 261 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCC-------------------------HHHHHHHHHHHHc
Confidence 222 34431 1246899999998662 3445557766642
Q ss_pred -cccCCCC------ceEEEEecCCC-------CCCCccccCCCceeeEEEeCCCCH----HHHHHHHHHhhC
Q 011374 351 -LWSSCGD------ERIIIFTTNHK-------DRLDPALLRPGRMDVHIHMSYCTP----CGFKMLASNYLG 404 (487)
Q Consensus 351 -l~s~~~~------~~iiI~TTN~~-------~~LD~ALlRpGRfd~~I~~~~p~~----~~~~~l~~~~l~ 404 (487)
-...-|+ ++=||++||.. ...-+.|.- |+.+ +.+..|.- ++.--|+++|+.
T Consensus 262 ~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLnV-~~i~iPpLRER~EDIp~L~~hfl~ 330 (464)
T COG2204 262 REFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLNV-VPLRLPPLRERKEDIPLLAEHFLK 330 (464)
T ss_pred CeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhcc-ceecCCcccccchhHHHHHHHHHH
Confidence 1111121 34588899863 222333333 5532 44444443 445566666664
No 277
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00036 Score=72.91 Aligned_cols=65 Identities=26% Similarity=0.486 Sum_probs=42.9
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcC-------CcEEEeecCcc----------------------cChHHHHHHHHHc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLN-------FDVYDLELSSV----------------------EGNKDLRQILIAT 297 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~-------~~v~~l~~~~~----------------------~~~~~l~~l~~~~ 297 (487)
.++.++|+||+|+||||.+.-+|..+. ..+..+++... .....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 456789999999999999999998763 33433333332 2234445555555
Q ss_pred cCCeEEEEeccchh
Q 011374 298 ENKSILVVEDIDCC 311 (487)
Q Consensus 298 ~~~sIl~IDeiD~~ 311 (487)
....+|+||.+..+
T Consensus 253 ~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 KDFDLVLVDTIGKS 266 (388)
T ss_pred CCCCEEEEcCCCCC
Confidence 55678888888654
No 278
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.72 E-value=0.00032 Score=73.75 Aligned_cols=130 Identities=17% Similarity=0.164 Sum_probs=78.5
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc-cChHHHHHHH---HHcc--CCeEEEEeccchhhhhhhH
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV-EGNKDLRQIL---IATE--NKSILVVEDIDCCLEMQDR 317 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~-~~~~~l~~l~---~~~~--~~sIl~IDeiD~~~~~~~~ 317 (487)
...++ -++++||-+||||++++-+...+.-.++.++..+. .....+.+.+ .... .++.||||||++.-+
T Consensus 34 ~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~---- 108 (398)
T COG1373 34 DLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPD---- 108 (398)
T ss_pred ccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchh----
Confidence 34444 78999999999999998888887554443433333 2333332222 2222 458999999997732
Q ss_pred HHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCC-CccccCCCceeeEEEeCCCCHHHHH
Q 011374 318 LAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRL-DPALLRPGRMDVHIHMSYCTPCGFK 396 (487)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~L-D~ALlRpGRfd~~I~~~~p~~~~~~ 396 (487)
....+-...|. ... .++|.++|..-.+ ..+-.=+||. ..+++.+.++.++.
T Consensus 109 ----------------------W~~~lk~l~d~----~~~-~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl 160 (398)
T COG1373 109 ----------------------WERALKYLYDR----GNL-DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFL 160 (398)
T ss_pred ----------------------HHHHHHHHHcc----ccc-eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHH
Confidence 11122223332 111 4666666654332 2233346794 77999999999985
Q ss_pred H-------------HHHHhhCcC
Q 011374 397 M-------------LASNYLGIT 406 (487)
Q Consensus 397 ~-------------l~~~~l~~~ 406 (487)
. ++..|+...
T Consensus 161 ~~~~~~~~~~~~~~~f~~Yl~~G 183 (398)
T COG1373 161 KLKGEEIEPSKLELLFEKYLETG 183 (398)
T ss_pred hhcccccchhHHHHHHHHHHHhC
Confidence 4 677777654
No 279
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.72 E-value=0.00042 Score=65.71 Aligned_cols=35 Identities=40% Similarity=0.576 Sum_probs=26.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~ 283 (487)
+..++.||||||||+++++++..+ +..++.+..+.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 457889999999999999988766 56777666554
No 280
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=9.7e-05 Score=76.61 Aligned_cols=103 Identities=23% Similarity=0.336 Sum_probs=63.0
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc----C-CcEEEeecCcc----------------------cChHHHHHHHHHccCC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL----N-FDVYDLELSSV----------------------EGNKDLRQILIATENK 300 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l----~-~~v~~l~~~~~----------------------~~~~~l~~l~~~~~~~ 300 (487)
+..++|.||+|+||||++..||..+ + ..+..+....+ .+..++...+......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4568999999999999999999864 3 23433333222 2334556666666777
Q ss_pred eEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccc
Q 011374 301 SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPAL 375 (487)
Q Consensus 301 sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~AL 375 (487)
.+|+||..... .....+...+..+.+.... -+..+|+-+|+..+.++..+
T Consensus 217 DlVLIDTaG~~------------------------~~d~~l~e~La~L~~~~~~-~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 217 HMVLIDTIGMS------------------------QRDRTVSDQIAMLHGADTP-VQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred CEEEEcCCCCC------------------------cccHHHHHHHHHHhccCCC-CeEEEEecCccChHHHHHHH
Confidence 89999988633 1123355566666554221 12244555677776666443
No 281
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.70 E-value=0.00042 Score=71.92 Aligned_cols=24 Identities=33% Similarity=0.575 Sum_probs=21.7
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
.|++||||+|||+|++.|++.+..
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Confidence 789999999999999999997743
No 282
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.67 E-value=6.6e-05 Score=65.68 Aligned_cols=50 Identities=18% Similarity=0.186 Sum_probs=41.6
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcc--cceeeCCCCCcHHHHHHHHHHHc
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKR--GYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~r--g~LL~GPPGtGKTsLa~alA~~l 272 (487)
.|.|++-+++.|++.+..++.++ .+++ -+-|+||||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 57899999999999999998764 2233 34589999999999999999986
No 283
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.66 E-value=0.00038 Score=64.66 Aligned_cols=30 Identities=27% Similarity=0.249 Sum_probs=22.9
Q ss_pred ceeeCCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011374 251 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~ 280 (487)
+|++||||||||+|+..++... |.++..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6899999999999999877654 44554443
No 284
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.64 E-value=0.00018 Score=69.83 Aligned_cols=37 Identities=30% Similarity=0.335 Sum_probs=28.4
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~ 280 (487)
|.+.+..++++||||||||+|+..++... +..++.++
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 66777789999999999999999986543 44554443
No 285
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.63 E-value=6.1e-05 Score=83.07 Aligned_cols=126 Identities=20% Similarity=0.216 Sum_probs=74.0
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCc---------ccChHHHHHHHHH-----ccCCeEEEEeccchhhhhh
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS---------VEGNKDLRQILIA-----TENKSILVVEDIDCCLEMQ 315 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~---------~~~~~~l~~l~~~-----~~~~sIl~IDeiD~~~~~~ 315 (487)
++||.|.||||||.|.+.+++.+...+|.---++ +.+.. ..+.... ...++|.+|||+|.+-.
T Consensus 321 nILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~-tge~~LeaGALVlAD~Gv~cIDEfdKm~~-- 397 (682)
T COG1241 321 HILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKV-TGEWVLEAGALVLADGGVCCIDEFDKMNE-- 397 (682)
T ss_pred eEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccC-CCeEEEeCCEEEEecCCEEEEEeccCCCh--
Confidence 4899999999999999999999987777421111 11111 1111111 14689999999997632
Q ss_pred hHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc---------ccCCCCceEEEEecCCCC-------------CCCc
Q 011374 316 DRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL---------WSSCGDERIIIFTTNHKD-------------RLDP 373 (487)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl---------~s~~~~~~iiI~TTN~~~-------------~LD~ 373 (487)
...+.+...|+.. ..+-+-.--|++++|... .|++
T Consensus 398 -----------------------~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~ 454 (682)
T COG1241 398 -----------------------EDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPA 454 (682)
T ss_pred -----------------------HHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCCh
Confidence 1122333333311 100011123567777653 4788
Q ss_pred cccCCCceeeEEEe-CCCCHHHHHHHHHHhh
Q 011374 374 ALLRPGRMDVHIHM-SYCTPCGFKMLASNYL 403 (487)
Q Consensus 374 ALlRpGRfd~~I~~-~~p~~~~~~~l~~~~l 403 (487)
+|++ |||..+-+ ..|+.+.=+.++.+.+
T Consensus 455 ~lLS--RFDLifvl~D~~d~~~D~~ia~hil 483 (682)
T COG1241 455 PLLS--RFDLIFVLKDDPDEEKDEEIAEHIL 483 (682)
T ss_pred hHHh--hCCeeEEecCCCCccchHHHHHHHH
Confidence 9999 99987655 6666665444444433
No 286
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.63 E-value=0.0002 Score=66.35 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=46.7
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChH-----------------------HHHHHHHH-ccCCeEEEE
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNK-----------------------DLRQILIA-TENKSILVV 305 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~-----------------------~l~~l~~~-~~~~sIl~I 305 (487)
-+|+.||||+|||++|..+|..++.+++.+......+.. +|.+++.. ..++.+++|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 378999999999999999999998887777665543221 34444544 344668899
Q ss_pred eccchhhh
Q 011374 306 EDIDCCLE 313 (487)
Q Consensus 306 DeiD~~~~ 313 (487)
|-+..+..
T Consensus 83 D~Lt~~~~ 90 (170)
T PRK05800 83 DCLTTWVT 90 (170)
T ss_pred hhHHHHHH
Confidence 98887754
No 287
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.62 E-value=0.00023 Score=67.71 Aligned_cols=113 Identities=21% Similarity=0.277 Sum_probs=64.7
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKA 323 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~ 323 (487)
|....-.++|.|+.|+|||++++.|+... +.-........+ ....+...-|+.|||++.+..
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~~kd----~~~~l~~~~iveldEl~~~~k---------- 109 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFDDKD----FLEQLQGKWIVELDELDGLSK---------- 109 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHh----ccCccccCCCcH----HHHHHHHhHheeHHHHhhcch----------
Confidence 55555567899999999999999997762 211122222222 233344567999999987631
Q ss_pred ccchhhhhcccCCchhhHhhHHHHh-hccc-------cCCCCceEEEEecCCCCCC-CccccCCCceeeEEEeCC
Q 011374 324 AIPDLYRSACNQGNRVTLSGLLNFI-DGLW-------SSCGDERIIIFTTNHKDRL-DPALLRPGRMDVHIHMSY 389 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~ls~LL~~l-Dgl~-------s~~~~~~iiI~TTN~~~~L-D~ALlRpGRfd~~I~~~~ 389 (487)
.....+..++..- |-+. ...+..-++|+|||..+-| |+.=-| || ..|+++.
T Consensus 110 ------------~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 110 ------------KDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred ------------hhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 0111222222211 1111 1112234789999998755 566668 88 4566654
No 288
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.62 E-value=0.00037 Score=66.79 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=30.0
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~ 281 (487)
|++.+.-++++||||||||+++..+|... +.+++.++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 56666679999999999999999998765 456665654
No 289
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.61 E-value=0.00011 Score=67.90 Aligned_cols=22 Identities=36% Similarity=0.794 Sum_probs=20.0
Q ss_pred ceeeCCCCCcHHHHHHHHHHHc
Q 011374 251 YLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l 272 (487)
++|.|+||+||||+++.+++.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 290
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.60 E-value=5.2e-05 Score=68.17 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=28.3
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
.++|+||||+|||++++.+|..+++++++.+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3789999999999999999999999998665
No 291
>PRK13947 shikimate kinase; Provisional
Probab=97.60 E-value=5.1e-05 Score=69.74 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=29.5
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~ 281 (487)
.++|.|+||||||++++.+|+.+++++++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 48999999999999999999999999997663
No 292
>PRK03839 putative kinase; Provisional
Probab=97.58 E-value=5.1e-05 Score=70.62 Aligned_cols=30 Identities=30% Similarity=0.597 Sum_probs=27.7
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
++|.|+||+||||+++.+|+.+++++++++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999998654
No 293
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00024 Score=68.93 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.1
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l 272 (487)
-+-|.||+|||||||.+.||...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37789999999999999999877
No 294
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.57 E-value=0.00019 Score=82.93 Aligned_cols=139 Identities=20% Similarity=0.239 Sum_probs=90.7
Q ss_pred CCcccceeeCCCCCcHHHH-HHHHHHHcCCcEEEeecCcccChHHHHHHHHHcc-------------C----CeEEEEec
Q 011374 246 AWKRGYLLYGPPGTGKSSL-IAAMANYLNFDVYDLELSSVEGNKDLRQILIATE-------------N----KSILVVED 307 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsL-a~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~~~-------------~----~sIl~IDe 307 (487)
...|+|+++||||+|||+| .-++-+.+-+.++.++.+.-.........+.+.. . .-|||.||
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDe 1571 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDE 1571 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeec
Confidence 3468999999999999985 5588999999999999988766555555554431 1 25999999
Q ss_pred cchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCC------CceEEEEecCCCCCC-----Ccccc
Q 011374 308 IDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCG------DERIIIFTTNHKDRL-----DPALL 376 (487)
Q Consensus 308 iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~------~~~iiI~TTN~~~~L-----D~ALl 376 (487)
|. +....+ -. .+..-..+..|+ .=.|+|++.. .++++++++|.+... ...++
T Consensus 1572 In-Lp~~~~-y~--------------~~~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~ 1634 (3164)
T COG5245 1572 IN-LPYGFE-YY--------------PPTVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFI 1634 (3164)
T ss_pred cC-Cccccc-cC--------------CCceEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHh
Confidence 98 311100 00 011111111222 2245665322 347888999976432 35566
Q ss_pred CCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 377 RPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 377 RpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
| | ...|+..||.-..+..|...+|.
T Consensus 1635 r--~-~v~vf~~ype~~SL~~Iyea~l~ 1659 (3164)
T COG5245 1635 R--K-PVFVFCCYPELASLRNIYEAVLM 1659 (3164)
T ss_pred c--C-ceEEEecCcchhhHHHHHHHHHH
Confidence 5 3 46789999999999999988775
No 295
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.56 E-value=0.00051 Score=63.62 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=44.9
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc-----------------------ChHHHHHHHHHccCCeEEEEec
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-----------------------GNKDLRQILIATENKSILVVED 307 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~-----------------------~~~~l~~l~~~~~~~sIl~IDe 307 (487)
+|+.||||+|||++|..+|...+.+++.+...... ...++.+.+...+.+.+++||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 58999999999999999998877777777555431 1234444444434556899998
Q ss_pred cchhhh
Q 011374 308 IDCCLE 313 (487)
Q Consensus 308 iD~~~~ 313 (487)
+.....
T Consensus 82 lt~~~~ 87 (169)
T cd00544 82 LTLWVT 87 (169)
T ss_pred HhHHHH
Confidence 887754
No 296
>PRK00625 shikimate kinase; Provisional
Probab=97.55 E-value=6.4e-05 Score=69.93 Aligned_cols=31 Identities=32% Similarity=0.605 Sum_probs=28.9
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
.++|.|+||+|||++++.+|+.++++++++|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4789999999999999999999999999876
No 297
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.54 E-value=4.1e-05 Score=67.94 Aligned_cols=27 Identities=44% Similarity=0.707 Sum_probs=24.0
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEE
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVY 277 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~ 277 (487)
+++.||||+||||+|+.++..++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 689999999999999999999995444
No 298
>PRK13949 shikimate kinase; Provisional
Probab=97.53 E-value=6.5e-05 Score=69.56 Aligned_cols=31 Identities=35% Similarity=0.499 Sum_probs=29.0
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
.++|.||||+|||++++.+|+.++++++++|
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999998766
No 299
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.52 E-value=0.00053 Score=66.71 Aligned_cols=37 Identities=30% Similarity=0.347 Sum_probs=25.7
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHH-Hc--CCcEEEee
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMAN-YL--NFDVYDLE 280 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~-~l--~~~v~~l~ 280 (487)
|.+...-+++.||||||||+++..++. .+ +..+..+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 456667789999999999999755444 32 44444443
No 300
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.52 E-value=0.00084 Score=69.39 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.7
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
.|+.||||||||+|++.+|+.+..
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 699999999999999999998743
No 301
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.52 E-value=0.00038 Score=66.88 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=40.2
Q ss_pred ccceeeCCCCCcHHHHHHHHHH-----HcCCcE---------EEeecCcccC--------------hHHHHHHHHHccCC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMAN-----YLNFDV---------YDLELSSVEG--------------NKDLRQILIATENK 300 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~-----~l~~~v---------~~l~~~~~~~--------------~~~l~~l~~~~~~~ 300 (487)
+.++|.||.|+|||++.+.++. ..|..+ ++-..+.+.. -..+..++..+..+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 6789999999999999999983 233322 1111111111 12233344455789
Q ss_pred eEEEEeccchhh
Q 011374 301 SILVVEDIDCCL 312 (487)
Q Consensus 301 sIl~IDeiD~~~ 312 (487)
++++|||+..-.
T Consensus 110 slvllDE~~~gt 121 (213)
T cd03281 110 SLVLIDEFGKGT 121 (213)
T ss_pred cEEEeccccCCC
Confidence 999999997543
No 302
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.51 E-value=0.0006 Score=68.67 Aligned_cols=156 Identities=22% Similarity=0.256 Sum_probs=94.4
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHH-HHHH--HcCCcEEEeecCcc-cC----
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIA-AMAN--YLNFDVYDLELSSV-EG---- 286 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~-alA~--~l~~~v~~l~~~~~-~~---- 286 (487)
.+.|..+..+.+-+.+.+-.-. .-..++++.||.|+|||.++. .++. +.|-+++.+-+... .+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 4556666667666655533222 124679999999999999876 3443 67878877655442 11
Q ss_pred ----------------------hHHHHHHHHHc-------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCc
Q 011374 287 ----------------------NKDLRQILIAT-------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (487)
Q Consensus 287 ----------------------~~~l~~l~~~~-------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (487)
...+..++... ..+.|.++||||...+ .+
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~----------------------h~ 153 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP----------------------HS 153 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc----------------------ch
Confidence 11122222211 1235667789998753 11
Q ss_pred hhhHhhHHHHhhccccCCCCceEEEEecCCCC---CCCccccCCCceeeE-EEeCC-CCHHHHHHHHHHhhCcC
Q 011374 338 RVTLSGLLNFIDGLWSSCGDERIIIFTTNHKD---RLDPALLRPGRMDVH-IHMSY-CTPCGFKMLASNYLGIT 406 (487)
Q Consensus 338 ~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~---~LD~ALlRpGRfd~~-I~~~~-p~~~~~~~l~~~~l~~~ 406 (487)
+.++ |.|.+|-..+. .-++.||+-|.+.+ .|.....+ ||... |+|+. ...++...++++.+...
T Consensus 154 rQtl--lYnlfDisqs~-r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~v~ 222 (408)
T KOG2228|consen 154 RQTL--LYNLFDISQSA-RAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLSVP 222 (408)
T ss_pred hhHH--HHHHHHHHhhc-CCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhcCC
Confidence 2222 55666755433 34577777666554 45566767 88655 77744 46789999999988543
No 303
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.51 E-value=0.00033 Score=67.51 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=31.7
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~ 282 (487)
|++.+.-++++||||+|||+++..+|... +..++.+++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56666778999999999999999998754 6677777665
No 304
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.51 E-value=0.00063 Score=72.16 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc
Q 011374 221 DMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV 284 (487)
Q Consensus 221 ~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~ 284 (487)
.+.+.+.+.|...+.......... ..|..++|+||||+||||++..+|.++ +..+..+++...
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 344555555555444321111111 346678999999999999999999887 455665655544
No 305
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.48 E-value=7.6e-05 Score=68.85 Aligned_cols=32 Identities=34% Similarity=0.446 Sum_probs=30.0
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
+.+.|.|++|+||||+.+++|+.|++++++.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46899999999999999999999999999876
No 306
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.46 E-value=0.00033 Score=66.58 Aligned_cols=65 Identities=18% Similarity=0.341 Sum_probs=43.1
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc-----CCcEE-------------EeecC-cc--------cChHHHHHHHHHcc--
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL-----NFDVY-------------DLELS-SV--------EGNKDLRQILIATE-- 298 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l-----~~~v~-------------~l~~~-~~--------~~~~~l~~l~~~~~-- 298 (487)
++.++|.||.|+||||+.+.++... |.++- .+... ++ ..-..+.+++....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKG 104 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCC
Confidence 4678999999999999999998533 44331 01000 00 01144667777777
Q ss_pred CCeEEEEeccchhh
Q 011374 299 NKSILVVEDIDCCL 312 (487)
Q Consensus 299 ~~sIl~IDeiD~~~ 312 (487)
.|.++++||.-.-+
T Consensus 105 ~p~llllDEp~~gl 118 (199)
T cd03283 105 EPVLFLLDEIFKGT 118 (199)
T ss_pred CCeEEEEecccCCC
Confidence 89999999986443
No 307
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.45 E-value=0.0005 Score=77.98 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=21.0
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
+.++|.||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 56899999999999999999876
No 308
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.45 E-value=0.00023 Score=78.82 Aligned_cols=52 Identities=29% Similarity=0.331 Sum_probs=42.3
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
.+|..|+.++|+++.++.|...+. .++.++|+||||||||++++++|..+..
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~---------------~~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAK---------------QRRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHH---------------hCCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 347899999999888887655443 1247999999999999999999998863
No 309
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.44 E-value=0.0012 Score=68.93 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=22.8
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-+++.||||||||+|++.+++.+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 34489999999999999999999864
No 310
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.44 E-value=0.00066 Score=71.56 Aligned_cols=90 Identities=13% Similarity=0.153 Sum_probs=67.1
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccCh
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGN 287 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~ 287 (487)
..+..+||.......+++.++.-.. ..-.+||.|..||||..+|++|-+.. +.|++.+||..+-.+
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA~-----------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVAK-----------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHhc-----------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 4678899998888888888874433 24579999999999999999998877 579999999998321
Q ss_pred HHHHHHHHH-----------------ccCCeEEEEeccchh
Q 011374 288 KDLRQILIA-----------------TENKSILVVEDIDCC 311 (487)
Q Consensus 288 ~~l~~l~~~-----------------~~~~sIl~IDeiD~~ 311 (487)
--=-++|-. .....-||+|||..+
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel 329 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL 329 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCCeEechhhccC
Confidence 111233311 234689999999765
No 311
>PRK13948 shikimate kinase; Provisional
Probab=97.44 E-value=0.00013 Score=68.47 Aligned_cols=34 Identities=26% Similarity=0.162 Sum_probs=31.6
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
+++.++|.|++|+|||++++.+|+.++.++++.|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 4578999999999999999999999999999877
No 312
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.42 E-value=0.00053 Score=77.98 Aligned_cols=65 Identities=14% Similarity=0.305 Sum_probs=40.3
Q ss_pred cccceeeCCCCCcHHHHHHHHHHH-----cCCc----------EEEeecCcccC--------------hHHHHHHHHHcc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANY-----LNFD----------VYDLELSSVEG--------------NKDLRQILIATE 298 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~-----l~~~----------v~~l~~~~~~~--------------~~~l~~l~~~~~ 298 (487)
.+.++|.||.+.|||++.+.++-. .|++ +++--++.+.+ -..+..++..+.
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~ 406 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKAD 406 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCC
Confidence 356899999999999999988643 2322 22111111111 122334455556
Q ss_pred CCeEEEEeccchhh
Q 011374 299 NKSILVVEDIDCCL 312 (487)
Q Consensus 299 ~~sIl~IDeiD~~~ 312 (487)
.+++++|||+..-.
T Consensus 407 ~~sLvLlDE~~~Gt 420 (782)
T PRK00409 407 KNSLVLFDELGAGT 420 (782)
T ss_pred cCcEEEecCCCCCC
Confidence 89999999997543
No 313
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.41 E-value=0.00043 Score=70.44 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=43.1
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc---------------------cChHHHHHHH---HH
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV---------------------EGNKDLRQIL---IA 296 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~---------------------~~~~~l~~l~---~~ 296 (487)
|.+..+.+++|||||||||+|+..++... +..+..++.... ........++ ..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56666778999999999999987655433 444444443221 1111111222 22
Q ss_pred ccCCeEEEEeccchhhh
Q 011374 297 TENKSILVVEDIDCCLE 313 (487)
Q Consensus 297 ~~~~sIl~IDeiD~~~~ 313 (487)
.....+||||-+.++..
T Consensus 131 ~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVP 147 (321)
T ss_pred ccCCcEEEEcchhhhcc
Confidence 34578999999998864
No 314
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.40 E-value=0.00049 Score=70.77 Aligned_cols=115 Identities=22% Similarity=0.210 Sum_probs=65.8
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKA 323 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~ 323 (487)
|+|.+..++|||||+||||+++-.+-+.++-.++..--+ .-+-.|.-....-|-+|||+-...=
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns------~ShFWLqPL~d~Ki~llDDAT~~cW---------- 321 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS------KSHFWLQPLADAKIALLDDATYPCW---------- 321 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGT------TSCGGGGGGCT-SSEEEEEE-HHHH----------
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCC------CCcccccchhcCcEEEEcCCcccHH----------
Confidence 678888899999999999999999999998888753111 1111223334456889999864321
Q ss_pred ccchhhhhcccCCchhhHhhHHHHhhccccCCC---C------ceEEEEecCCCCCCCccc---cCCCceeeEEEeCCCC
Q 011374 324 AIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCG---D------ERIIIFTTNHKDRLDPAL---LRPGRMDVHIHMSYCT 391 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~---~------~~iiI~TTN~~~~LD~AL---lRpGRfd~~I~~~~p~ 391 (487)
.-.=..|-|.+||-.-+-. . -.-++.|||.-=.-|+.+ .+ |+ ..++|+.+=
T Consensus 322 --------------~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhS--Ri-~~f~F~n~~ 384 (432)
T PF00519_consen 322 --------------DYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHS--RI-TCFEFPNPF 384 (432)
T ss_dssp --------------HHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCT--TE-EEEE--S-S
T ss_pred --------------HHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhh--eE-EEEEcCCcc
Confidence 1111335688887421000 0 014678998644444443 35 77 457776654
No 315
>PRK06217 hypothetical protein; Validated
Probab=97.40 E-value=0.00013 Score=68.22 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=28.0
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
|+|.|+||+||||+++++|..++++++++|
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 899999999999999999999999988765
No 316
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.40 E-value=0.00013 Score=67.88 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=25.1
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
+++.||||+||||+++.+|..+++..+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is 29 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS 29 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 6899999999999999999999876654
No 317
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.38 E-value=0.00021 Score=76.85 Aligned_cols=162 Identities=17% Similarity=0.251 Sum_probs=96.1
Q ss_pred ccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCc--ccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc------
Q 011374 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWK--RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------ 284 (487)
Q Consensus 213 fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~--rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~------ 284 (487)
|-.+.|.+.+|.-|+-.| +.+-..+..-|.+.+ -++++.|.||||||-+.++.++.+...+|.---++-
T Consensus 344 ~PsIyGhe~VK~GilL~L---fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL---FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHHHHH---hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence 667778888887775433 221111111122221 248999999999999999999999888885321111
Q ss_pred ---cChHHHHHHHHHc-----cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhh-------
Q 011374 285 ---EGNKDLRQILIAT-----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFID------- 349 (487)
Q Consensus 285 ---~~~~~l~~l~~~~-----~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD------- 349 (487)
.++.. .+...++ ....|-.|||+|.+-.. -.-.++.+|+
T Consensus 421 aVvkD~es-gdf~iEAGALmLADnGICCIDEFDKMd~~-------------------------dqvAihEAMEQQtISIa 474 (764)
T KOG0480|consen 421 AVVKDEES-GDFTIEAGALMLADNGICCIDEFDKMDVK-------------------------DQVAIHEAMEQQTISIA 474 (764)
T ss_pred EEEecCCC-CceeeecCcEEEccCceEEechhcccChH-------------------------hHHHHHHHHHhheehhe
Confidence 11111 1111122 45789999999988320 1122344443
Q ss_pred --ccccCCCCceEEEEecCCCC-------------CCCccccCCCceeeEE-EeCCCCHHHHHHHHHHhhCc
Q 011374 350 --GLWSSCGDERIIIFTTNHKD-------------RLDPALLRPGRMDVHI-HMSYCTPCGFKMLASNYLGI 405 (487)
Q Consensus 350 --gl~s~~~~~~iiI~TTN~~~-------------~LD~ALlRpGRfd~~I-~~~~p~~~~~~~l~~~~l~~ 405 (487)
|+..+-+-.--|++++|... ++++++++ |||..+ -+..|++..=..|+++.+..
T Consensus 475 KAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 475 KAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred ecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 22111111234677787542 46899999 999765 55999998877777777654
No 318
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.38 E-value=0.0011 Score=65.19 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=23.8
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
+.-++|.||+|||||+|++.+++.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 445899999999999999999998854
No 319
>PTZ00202 tuzin; Provisional
Probab=97.38 E-value=0.014 Score=61.49 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=54.6
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHH
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKD 289 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~ 289 (487)
|.......|-++.-..+...+. ......++-+.|.||+|||||+|++.++..++...+.+|... ..+-
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~----------~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg--~eEl 325 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLR----------RLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG--TEDT 325 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHh----------ccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC--HHHH
Confidence 5556677887777666655443 122334567789999999999999999999998888888773 3455
Q ss_pred HHHHHHHcc
Q 011374 290 LRQILIATE 298 (487)
Q Consensus 290 l~~l~~~~~ 298 (487)
++.++....
T Consensus 326 Lr~LL~ALG 334 (550)
T PTZ00202 326 LRSVVKALG 334 (550)
T ss_pred HHHHHHHcC
Confidence 555555443
No 320
>PRK14532 adenylate kinase; Provisional
Probab=97.38 E-value=0.00014 Score=68.12 Aligned_cols=30 Identities=20% Similarity=0.437 Sum_probs=26.6
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
.++|.||||+||||+++.+|..+++..++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 378999999999999999999999877643
No 321
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.38 E-value=0.00015 Score=66.29 Aligned_cols=28 Identities=32% Similarity=0.622 Sum_probs=24.7
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
++|.||||+||||+++.+++.++..+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999866653
No 322
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.37 E-value=0.00032 Score=71.31 Aligned_cols=58 Identities=26% Similarity=0.264 Sum_probs=42.6
Q ss_pred cCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 218 MDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 218 g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
+.++.++.+.+.+...+.... -..++..+.|.|+||||||++++.+|..+|+++++++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 345566666666655443211 2345677999999999999999999999999999655
No 323
>PRK04040 adenylate kinase; Provisional
Probab=97.37 E-value=0.0018 Score=61.01 Aligned_cols=29 Identities=21% Similarity=0.534 Sum_probs=25.1
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc--CCcEE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL--NFDVY 277 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l--~~~v~ 277 (487)
.-++++|+|||||||+++.++..+ ++.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 458899999999999999999999 55554
No 324
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.37 E-value=0.00014 Score=65.33 Aligned_cols=28 Identities=32% Similarity=0.460 Sum_probs=25.0
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
++|.||||+||||+++.++..++..+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 325
>PRK05973 replicative DNA helicase; Provisional
Probab=97.36 E-value=0.0015 Score=63.69 Aligned_cols=37 Identities=22% Similarity=-0.007 Sum_probs=27.6
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~ 280 (487)
|.+++.-+|+.|+||+|||+++-.+|... |.+++.++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 56666678999999999999998776544 55554443
No 326
>PRK14531 adenylate kinase; Provisional
Probab=97.35 E-value=0.00016 Score=67.57 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=27.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
+-+++.||||+||||+++.+|..+|++.+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4589999999999999999999999887643
No 327
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.35 E-value=0.00016 Score=64.37 Aligned_cols=30 Identities=30% Similarity=0.497 Sum_probs=28.1
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
+.+.|+||||||++++.+|..+++++++.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999999999999999998776
No 328
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.35 E-value=0.00015 Score=64.80 Aligned_cols=32 Identities=31% Similarity=0.588 Sum_probs=29.0
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
+..+|+.|-||||||+++.++|..+++..+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 45799999999999999999999999988754
No 329
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.35 E-value=0.00076 Score=64.87 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=24.6
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
|.+.+.-+.|+||||+|||+|+..+|...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 56667778999999999999999887653
No 330
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.35 E-value=0.0068 Score=70.16 Aligned_cols=151 Identities=17% Similarity=0.118 Sum_probs=83.3
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc-ChH-----------------------------------HHH
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-GNK-----------------------------------DLR 291 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~-~~~-----------------------------------~l~ 291 (487)
.+-++++||+|.|||+++...+...+ ++..+++..-. +.. -+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 35689999999999999999887777 66665553210 000 011
Q ss_pred HHHHH---ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCC
Q 011374 292 QILIA---TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHK 368 (487)
Q Consensus 292 ~l~~~---~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~ 368 (487)
.++.. ...|.+|||||++.+-+ ..+...+...++.. +....+|+||...
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~~------------------------~~~~~~l~~l~~~~----~~~~~lv~~sR~~ 162 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLITN------------------------PEIHEAMRFFLRHQ----PENLTLVVLSRNL 162 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCCC------------------------hHHHHHHHHHHHhC----CCCeEEEEEeCCC
Confidence 22222 24689999999997621 11122222333332 2334555566542
Q ss_pred CCCCc-cccCCCceeeEEEeC----CCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhcCCCHHHHHHHH
Q 011374 369 DRLDP-ALLRPGRMDVHIHMS----YCTPCGFKMLASNYLGITEHPLFLEVEELIEKVEVTPADVAEQL 432 (487)
Q Consensus 369 ~~LD~-ALlRpGRfd~~I~~~----~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~~~l 432 (487)
..+.- .+... +..+++. ..+.++...++...++.. ...+++..+.+.++--|.-+...+
T Consensus 163 ~~~~~~~l~~~---~~~~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp~~l~l~~ 226 (903)
T PRK04841 163 PPLGIANLRVR---DQLLEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWATALQLIA 226 (903)
T ss_pred CCCchHhHHhc---CcceecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChHHHHHHHH
Confidence 22221 11111 2234444 668888888887766532 224456666666666666665444
No 331
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.34 E-value=0.00082 Score=67.42 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=28.0
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc----C-CcEEEeecCc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL----N-FDVYDLELSS 283 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l----~-~~v~~l~~~~ 283 (487)
++.++|.||+|+||||++..+|.++ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3468899999999999999999876 3 5666555544
No 332
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0042 Score=60.38 Aligned_cols=126 Identities=10% Similarity=0.060 Sum_probs=93.3
Q ss_pred cccceeeCCCC-CcHHHHHHHHHHHcC---------CcEEEeecC-------cccChHHHHHHHHHc------cCCeEEE
Q 011374 248 KRGYLLYGPPG-TGKSSLIAAMANYLN---------FDVYDLELS-------SVEGNKDLRQILIAT------ENKSILV 304 (487)
Q Consensus 248 ~rg~LL~GPPG-tGKTsLa~alA~~l~---------~~v~~l~~~-------~~~~~~~l~~l~~~~------~~~sIl~ 304 (487)
...||+.|..+ +||.-++.-++..+. -+++.+... ..-+-+.+|++.... ...-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 35699999998 999999988887763 245555432 122455666665443 2356999
Q ss_pred EeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeE
Q 011374 305 VEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVH 384 (487)
Q Consensus 305 IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~ 384 (487)
|+++|.+- ....+.||..++. ++...++|++|..++.|.|.+++ |. .+
T Consensus 95 I~~ae~mt-------------------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrS--RC-q~ 142 (263)
T PRK06581 95 IYSAELMN-------------------------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRS--RC-FK 142 (263)
T ss_pred EechHHhC-------------------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhh--ce-EE
Confidence 99999873 3456779998886 35668888999999999999998 76 57
Q ss_pred EEeCCCCHHHHHHHHHHhhCc
Q 011374 385 IHMSYCTPCGFKMLASNYLGI 405 (487)
Q Consensus 385 I~~~~p~~~~~~~l~~~~l~~ 405 (487)
+.|+.|......+++..++..
T Consensus 143 i~~~~p~~~~~~e~~~~~~~p 163 (263)
T PRK06581 143 INVRSSILHAYNELYSQFIQP 163 (263)
T ss_pred EeCCCCCHHHHHHHHHHhccc
Confidence 999999998888887776653
No 333
>PRK13946 shikimate kinase; Provisional
Probab=97.33 E-value=0.00016 Score=67.75 Aligned_cols=33 Identities=33% Similarity=0.472 Sum_probs=30.7
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
++.++|.|+||||||++++.+|+.+|+++++.|
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 467999999999999999999999999999776
No 334
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.32 E-value=0.00041 Score=71.19 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=21.7
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHH
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.+|+|++|||.-|||||+|.-..-..
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~ 137 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDA 137 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhc
Confidence 35899999999999999998766533
No 335
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.31 E-value=0.00011 Score=67.96 Aligned_cols=38 Identities=32% Similarity=0.447 Sum_probs=26.1
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCc---EEEeecCcc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLELSSV 284 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~---v~~l~~~~~ 284 (487)
.++.++|+||||+|||+|++++...+..+ ++.+++...
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 35789999999999999999998877444 666666655
No 336
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.31 E-value=0.00019 Score=67.23 Aligned_cols=29 Identities=31% Similarity=0.552 Sum_probs=26.1
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
++|.||||+|||++++.||..+++..+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998877654
No 337
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.31 E-value=0.00021 Score=66.34 Aligned_cols=34 Identities=41% Similarity=0.690 Sum_probs=30.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~ 281 (487)
++.++|.||+|+|||++++.+|+.+++++++.|.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3468999999999999999999999999987764
No 338
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.30 E-value=0.00075 Score=63.50 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=23.0
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.++-++|.||||+|||+|++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999998876
No 339
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.30 E-value=0.00048 Score=68.36 Aligned_cols=89 Identities=17% Similarity=0.382 Sum_probs=56.5
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCc---EEEeec-Ccc-
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLEL-SSV- 284 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~---v~~l~~-~~~- 284 (487)
+.+++++.......+.+.+.+...+. .++.+++.||+|+||||+++++..++... ++.++- .++
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v~-----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAVR-----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCHH-----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred cccHhhccCchhhHHHHHHHHhhccc-----------cceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 44888888777666666555543222 35679999999999999999999988443 333321 111
Q ss_pred ------------cChHHHHHHHHHc--cCCeEEEEeccc
Q 011374 285 ------------EGNKDLRQILIAT--ENKSILVVEDID 309 (487)
Q Consensus 285 ------------~~~~~l~~l~~~~--~~~sIl~IDeiD 309 (487)
.....+.+++..+ ..|.+|+|.||-
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 1334556666554 468899999996
No 340
>PF13479 AAA_24: AAA domain
Probab=97.29 E-value=0.00053 Score=65.83 Aligned_cols=61 Identities=28% Similarity=0.498 Sum_probs=39.8
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeecC-------------cccChHHHHHHHHHc----cCCeEEEEeccchhh
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS-------------SVEGNKDLRQILIAT----ENKSILVVEDIDCCL 312 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~-------------~~~~~~~l~~l~~~~----~~~sIl~IDeiD~~~ 312 (487)
.++||||||+|||+++..+-+-+ +++++.+ .+.+...+.+.+... ..--.||||-++.+.
T Consensus 5 ~~lIyG~~G~GKTt~a~~~~k~l---~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~~ 81 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASLPKPL---FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWLE 81 (213)
T ss_pred EEEEECCCCCCHHHHHHhCCCeE---EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHHH
Confidence 48999999999999999882222 2233222 113456666666432 345799999998874
Q ss_pred h
Q 011374 313 E 313 (487)
Q Consensus 313 ~ 313 (487)
.
T Consensus 82 ~ 82 (213)
T PF13479_consen 82 D 82 (213)
T ss_pred H
Confidence 3
No 341
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.28 E-value=0.00024 Score=65.41 Aligned_cols=31 Identities=29% Similarity=0.487 Sum_probs=28.7
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
.++|.|+||||||++++.+|..+++++++.|
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5789999999999999999999999998765
No 342
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.27 E-value=0.0012 Score=65.55 Aligned_cols=85 Identities=20% Similarity=0.322 Sum_probs=52.0
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC---CcEEEee------c
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLE------L 281 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~---~~v~~l~------~ 281 (487)
.+++++.+.++..+.+.+.+. .....+++.||+|+||||+++++..++. ..++.++ +
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~--------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE--------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 467888877776665533332 1123478999999999999999988774 2344332 1
Q ss_pred Ccc-----c--ChHHHHHHHHHc--cCCeEEEEeccc
Q 011374 282 SSV-----E--GNKDLRQILIAT--ENKSILVVEDID 309 (487)
Q Consensus 282 ~~~-----~--~~~~l~~l~~~~--~~~sIl~IDeiD 309 (487)
..+ . ....+..++..+ ..|.+|+|.||.
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 111 0 111233333333 468999999995
No 343
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.25 E-value=0.00049 Score=73.45 Aligned_cols=70 Identities=26% Similarity=0.343 Sum_probs=46.7
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCccc--------------------ChHHHHHHHHHc--c
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE--------------------GNKDLRQILIAT--E 298 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~--------------------~~~~l~~l~~~~--~ 298 (487)
|.+...-+||+||||+|||+|+..+|... +..++.++..+-. ....+.+++... .
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 56666778999999999999999998765 5666666543310 011222333222 3
Q ss_pred CCeEEEEeccchhhh
Q 011374 299 NKSILVVEDIDCCLE 313 (487)
Q Consensus 299 ~~sIl~IDeiD~~~~ 313 (487)
.+.+||||.|..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 578999999987753
No 344
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.24 E-value=0.00098 Score=59.21 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=25.0
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFD 275 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~ 275 (487)
.+.-++|.|+.|+|||++++++++.++..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34568899999999999999999999753
No 345
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.24 E-value=0.00023 Score=67.85 Aligned_cols=22 Identities=45% Similarity=0.842 Sum_probs=17.7
Q ss_pred ceeeCCCCCcHHHHHHHHHHHc
Q 011374 251 YLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l 272 (487)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999998777776665
No 346
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.24 E-value=0.0013 Score=63.34 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=27.2
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc----CCcEEEeec
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLEL 281 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l----~~~v~~l~~ 281 (487)
|.+.+..+|+.||||||||+|+..++... +.+++.+.+
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 66777779999999999999998765332 556555544
No 347
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.24 E-value=0.0037 Score=66.30 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=27.1
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc-----CCcEEEeecCc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELSS 283 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l-----~~~v~~l~~~~ 283 (487)
++.++|.||+|+||||++..||..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4568899999999999999988765 34565555544
No 348
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.24 E-value=0.00081 Score=61.63 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.3
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+-.+++.||+|||||+|.+++|+..
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 3458999999999999999999876
No 349
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.004 Score=64.91 Aligned_cols=57 Identities=21% Similarity=0.359 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011374 221 DMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (487)
Q Consensus 221 ~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~ 281 (487)
++++.+++.+...+.....+ ...++-++|.||+|+||||++..||..+ +..+..+++
T Consensus 218 ~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 218 EVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred HHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 45555555555544432111 1224668999999999999999999877 344444443
No 350
>PRK14530 adenylate kinase; Provisional
Probab=97.21 E-value=0.00028 Score=67.72 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=27.0
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
.++|.||||+||||+++.||..++++.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999877744
No 351
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.21 E-value=0.0011 Score=61.95 Aligned_cols=25 Identities=36% Similarity=0.719 Sum_probs=22.6
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
++-++|.||+|+||+++++.|....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3568999999999999999999986
No 352
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.00027 Score=64.16 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=25.7
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
+-+.|||||||||+++-+|+++|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 4578999999999999999999999984
No 353
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.18 E-value=0.0015 Score=66.85 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=47.1
Q ss_pred cc-ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-CCcEEEeecCcc
Q 011374 213 FD-TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELSSV 284 (487)
Q Consensus 213 fd-~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-~~~v~~l~~~~~ 284 (487)
|+ .+.|.++..+++++.+.....+ +-.-++-++|.||+|+|||+|++.+.+.+ .+++|.+..+-+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g-------~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm 125 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQG-------LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPM 125 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhc-------cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCcc
Confidence 55 7899988888887755432221 22345678899999999999999999888 457777644443
No 354
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.17 E-value=0.0031 Score=65.71 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=45.4
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCccc--------------------ChHHHHHHHHH--cc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE--------------------GNKDLRQILIA--TE 298 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~--------------------~~~~l~~l~~~--~~ 298 (487)
|+.++.-+||+||||+|||+|+..+|..+ +..++.++...-. ....+..++.. ..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 46666778999999999999999998765 3456555443210 11122233322 24
Q ss_pred CCeEEEEeccchhh
Q 011374 299 NKSILVVEDIDCCL 312 (487)
Q Consensus 299 ~~sIl~IDeiD~~~ 312 (487)
++.+|+||+|..+.
T Consensus 158 ~~~lVVIDSIq~l~ 171 (372)
T cd01121 158 KPDLVIIDSIQTVY 171 (372)
T ss_pred CCcEEEEcchHHhh
Confidence 67899999998775
No 355
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.0014 Score=59.40 Aligned_cols=27 Identities=41% Similarity=0.561 Sum_probs=23.6
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
...-+.|.||+|+|||+|+++|++.+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345688999999999999999999874
No 356
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.16 E-value=0.0012 Score=67.31 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=44.4
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc---------------------cChHHHHHHH---HH
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV---------------------EGNKDLRQIL---IA 296 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~---------------------~~~~~l~~l~---~~ 296 (487)
|.+..+-+++|||||||||+|+-.++... +..+..++...- .+...+..++ ..
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 45666678999999999999999766433 445555544221 1111222222 22
Q ss_pred ccCCeEEEEeccchhhh
Q 011374 297 TENKSILVVEDIDCCLE 313 (487)
Q Consensus 297 ~~~~sIl~IDeiD~~~~ 313 (487)
.....+||||-+-++.+
T Consensus 131 s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 131 SGAVDLIVVDSVAALVP 147 (325)
T ss_pred ccCCCEEEEcchHhhcc
Confidence 34578999999998864
No 357
>PRK06547 hypothetical protein; Provisional
Probab=97.16 E-value=0.0004 Score=64.49 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=29.6
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
..+.-|++.||+|+|||++++.+|+.++.+++.++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34567889999999999999999999988877554
No 358
>PRK06762 hypothetical protein; Provisional
Probab=97.15 E-value=0.0004 Score=63.55 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=27.1
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
++-++|.|+||+||||+|+.+++.++..++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 345789999999999999999999965555554
No 359
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.15 E-value=0.0012 Score=65.47 Aligned_cols=39 Identities=21% Similarity=0.119 Sum_probs=30.1
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~ 282 (487)
|.+.+..+|++||||||||+++..+|... +.++..+++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 56666778999999999999999876543 5666666664
No 360
>PRK02496 adk adenylate kinase; Provisional
Probab=97.14 E-value=0.00034 Score=65.28 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=26.2
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
+++.||||+|||++++.||..++++.+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 78999999999999999999999877644
No 361
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.14 E-value=0.00085 Score=52.47 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=31.0
Q ss_pred ceeeCCCCCcHHHHHHHHHHHc-CCcEEEeecCcccChHHHHHHHHHccCCeEEEEeccchh
Q 011374 251 YLLYGPPGTGKSSLIAAMANYL-NFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCC 311 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l-~~~v~~l~~~~~~~~~~l~~l~~~~~~~sIl~IDeiD~~ 311 (487)
+.+.|+||+|||++++++++.+ +.++..++. ++++|-+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~--------------------~~I~eg~~~~ 43 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE--------------------IVILEGLYAS 43 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE--------------------EEEecchhhh
Confidence 5688999999999999999996 234443332 7888877755
No 362
>PRK14528 adenylate kinase; Provisional
Probab=97.12 E-value=0.00039 Score=65.32 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=26.8
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
.+++.||||+|||++++.+|..++++.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 478999999999999999999999887653
No 363
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.12 E-value=0.0016 Score=61.83 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=40.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHH-H----cCCcE--------------EEeecCcc---------cChHHHHHHHHHccCC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMAN-Y----LNFDV--------------YDLELSSV---------EGNKDLRQILIATENK 300 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~-~----l~~~v--------------~~l~~~~~---------~~~~~l~~l~~~~~~~ 300 (487)
+-++|.||.|+|||++.+.+|. . .|..+ ..+..... .....+..++.....+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 4589999999999999999993 2 23211 11111110 1123344555556789
Q ss_pred eEEEEeccchhh
Q 011374 301 SILVVEDIDCCL 312 (487)
Q Consensus 301 sIl~IDeiD~~~ 312 (487)
.++++||.-.-+
T Consensus 110 ~llllDEp~~gl 121 (202)
T cd03243 110 SLVLIDELGRGT 121 (202)
T ss_pred eEEEEecCCCCC
Confidence 999999997654
No 364
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.12 E-value=0.00033 Score=64.99 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=27.2
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
++-++|.||||+||||++++++..++.+++.+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~ 33 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHF 33 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCcccc
Confidence 34689999999999999999999988766544
No 365
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.11 E-value=0.00041 Score=64.48 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=25.6
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
-+++.||||+||||+++.+|..+|+..+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 47889999999999999999999876653
No 366
>PRK13695 putative NTPase; Provisional
Probab=97.10 E-value=0.0024 Score=59.06 Aligned_cols=22 Identities=41% Similarity=0.792 Sum_probs=20.1
Q ss_pred ceeeCCCCCcHHHHHHHHHHHc
Q 011374 251 YLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l 272 (487)
++|.|+||+|||+|++.+++.+
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999988775
No 367
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.10 E-value=0.0058 Score=61.97 Aligned_cols=30 Identities=33% Similarity=0.307 Sum_probs=25.9
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcCCc
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFD 275 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~~~ 275 (487)
..+..+-|+||=|+|||++++.+-+.+.-.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 467788999999999999999998888544
No 368
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.08 E-value=0.0017 Score=64.76 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=23.2
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
.++++.||||+|||||.++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5799999999999999999999884
No 369
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.08 E-value=0.00078 Score=70.09 Aligned_cols=106 Identities=16% Similarity=0.320 Sum_probs=65.6
Q ss_pred CcceEEEEEeCCCChhHHHHhhhhHHHhhhhhhhhc-------------cceEEEEeecCCCCCCCCceecccCC--CCC
Q 011374 148 SNITFFALRFHKKHKDTVLRTYIPHILKKSKELSKK-------------KKTLKLFTLFPYRGDTEIWQSVNLDH--PAT 212 (487)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~l~~~l~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~w~~~~~~~--p~~ 212 (487)
.++....|+=.+-.+ .-|..+-..|.++++..... -+..++-...+. -+..|.=....+ ..+
T Consensus 169 G~~k~v~l~d~pl~~-~ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlrn~RIvIarPP--fSd~~EITavRPvvk~~ 245 (604)
T COG1855 169 GEWKLVRLSDKPLTR-EELEEIAREIIERAKRDPDSFIEIDRPGATVVQLRNYRIVIARPP--FSDRWEITAVRPVVKLS 245 (604)
T ss_pred CcEEEEEcCCccCCH-HHHHHHHHHHHHHHhhCcCceEEEccCCceEEEeccEEEEEecCC--CCCceEEEEEeeeEEec
Confidence 456666665444443 45777788888777554211 111112111111 122454332222 237
Q ss_pred ccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 213 fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
+++-.+++.+++++.+. -+|+|+.||||.||||+|+|+|.++..
T Consensus 246 ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy~~ 289 (604)
T COG1855 246 LEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFYAS 289 (604)
T ss_pred hhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHHHh
Confidence 88888888888888653 269999999999999999999999843
No 370
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.07 E-value=0.00045 Score=67.16 Aligned_cols=30 Identities=23% Similarity=0.564 Sum_probs=27.1
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
-++|.||||+||||+++.+|+.++++.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999999887754
No 371
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.06 E-value=0.018 Score=58.53 Aligned_cols=100 Identities=12% Similarity=0.069 Sum_probs=53.9
Q ss_pred CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEE-EEecC---CCC--CCC
Q 011374 299 NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERII-IFTTN---HKD--RLD 372 (487)
Q Consensus 299 ~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ii-I~TTN---~~~--~LD 372 (487)
-|.++.||++..++....-.+...... ....-.....|++.+.|-..-..+.+++ +.+|. .+. .++
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I--------~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~ 227 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPI--------HPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLP 227 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccc--------cHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccch
Confidence 377889999999976421111111000 1122344555666655544333323332 44443 222 455
Q ss_pred ccccC-CCc-----ee-------------eEEEeCCCCHHHHHHHHHHhhCcC
Q 011374 373 PALLR-PGR-----MD-------------VHIHMSYCTPCGFKMLASNYLGIT 406 (487)
Q Consensus 373 ~ALlR-pGR-----fd-------------~~I~~~~p~~~~~~~l~~~~l~~~ 406 (487)
.+|.. .++ |. ..|+++..+.++.+.+++.|....
T Consensus 228 ~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~ 280 (309)
T PF10236_consen 228 VALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSG 280 (309)
T ss_pred hhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCC
Confidence 56653 111 11 168899999999999998888654
No 372
>PRK08233 hypothetical protein; Provisional
Probab=97.06 E-value=0.0027 Score=58.56 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=24.6
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcC-CcEEEee
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLN-FDVYDLE 280 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~-~~v~~l~ 280 (487)
-+.+.|+||+||||+++.+|..++ ..++..+
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 467789999999999999999985 4444443
No 373
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.05 E-value=0.0015 Score=63.10 Aligned_cols=53 Identities=19% Similarity=0.138 Sum_probs=37.0
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---------CCcEEEeecCcccChHHHHHHHHH
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELSSVEGNKDLRQILIA 296 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---------~~~v~~l~~~~~~~~~~l~~l~~~ 296 (487)
|++.+.-+.|+||||||||+++..+|... +..++.++...-.....+.++...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~ 76 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAER 76 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHH
Confidence 56666778999999999999999887543 246666666553345556555543
No 374
>PF13245 AAA_19: Part of AAA domain
Probab=97.05 E-value=0.00077 Score=53.91 Aligned_cols=22 Identities=50% Similarity=0.991 Sum_probs=16.8
Q ss_pred ceeeCCCCCcHH-HHHHHHHHHc
Q 011374 251 YLLYGPPGTGKS-SLIAAMANYL 272 (487)
Q Consensus 251 ~LL~GPPGtGKT-sLa~alA~~l 272 (487)
+++.|||||||| ++++.++..+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 455999999999 5666666665
No 375
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.05 E-value=0.0041 Score=58.83 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=24.0
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
.+.-+.|.||+|+|||+|++.|+..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456689999999999999999999876
No 376
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=97.04 E-value=0.0016 Score=66.49 Aligned_cols=139 Identities=20% Similarity=0.240 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHHHHccCCe
Q 011374 222 MKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKS 301 (487)
Q Consensus 222 ~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~~~~~s 301 (487)
..+.|.+.|+.... ++|.+|.+||-||-.|||||||+|+-+.++-....+++.. +.|.--+.-+-..-
T Consensus 137 ~~~~i~~iL~~lv~--------N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~----dkl~FELG~AiDQf 204 (417)
T PF06431_consen 137 FDDVILEILKCLVE--------NIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQF 204 (417)
T ss_dssp HHHHHHHHHHHHHH--------TBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-T----TTHHHHHCCCTT-S
T ss_pred hHHHHHHHHHHHhc--------CCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCCh----hhcchhhheeeceE
Confidence 34455555554444 3677889999999999999999999999987776666543 33433333445677
Q ss_pred EEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCC-----Cce-----EEEEecCCCCCC
Q 011374 302 ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCG-----DER-----IIIFTTNHKDRL 371 (487)
Q Consensus 302 Il~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~-----~~~-----iiI~TTN~~~~L 371 (487)
.+++||+-.-.... .+. ....+-.-+..|-..+||.....- ..+ --|.|+|. -.|
T Consensus 205 mVvFEDVKGq~~~~----------~~L----p~G~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFPPgIvTmNe-Y~i 269 (417)
T PF06431_consen 205 MVVFEDVKGQPSDN----------KDL----PPGQGMNNLDNLRDYLDGAVKVNLERKHQNKRSQIFPPGIVTMNE-YKI 269 (417)
T ss_dssp EEEEEEE--SSTTT----------TT--------SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE----EEEEESS--B-
T ss_pred EEEEEecCCCcCCC----------CCC----CCCCCcccchhhhhhccCceeechhhhhcccccccCCCceEeecc-ccC
Confidence 89999985321100 000 022334556777888887532100 011 34778885 457
Q ss_pred CccccCCCceeeEEEeCC
Q 011374 372 DPALLRPGRMDVHIHMSY 389 (487)
Q Consensus 372 D~ALlRpGRfd~~I~~~~ 389 (487)
+..+.- ||...+.|..
T Consensus 270 P~Tv~v--Rf~~~~~F~~ 285 (417)
T PF06431_consen 270 PQTVKV--RFCKVLDFRP 285 (417)
T ss_dssp -HHHHT--TEEEEEE---
T ss_pred Ccceee--eeEeeEeccc
Confidence 778877 9988888863
No 377
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.00041 Score=63.72 Aligned_cols=29 Identities=28% Similarity=0.594 Sum_probs=26.3
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
+++.|.|||||||+++.++ .+|++++.++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 6899999999999999999 9999988653
No 378
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.03 E-value=0.00049 Score=65.77 Aligned_cols=28 Identities=29% Similarity=0.562 Sum_probs=25.8
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
+++.||||+|||++++.||..+++..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999987765
No 379
>PLN02200 adenylate kinase family protein
Probab=97.02 E-value=0.00059 Score=66.58 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=26.0
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEE
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~ 277 (487)
+.-+++.||||+|||++++.+|..+|+..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~hi 72 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHL 72 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 345789999999999999999999987643
No 380
>PRK04296 thymidine kinase; Provisional
Probab=97.02 E-value=0.0042 Score=58.53 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=23.4
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc---CCcEEEe
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL---NFDVYDL 279 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l---~~~v~~l 279 (487)
-.+++||||+|||+++..++..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999998888766 4555544
No 381
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.01 E-value=0.0035 Score=63.49 Aligned_cols=88 Identities=18% Similarity=0.229 Sum_probs=51.9
Q ss_pred cccccc-CHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEE----eecCcccCh
Q 011374 213 FDTLAM-DFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD----LELSSVEGN 287 (487)
Q Consensus 213 fd~l~g-~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~----l~~~~~~~~ 287 (487)
++++.. ++++++-+.+.+-.-+.. ......-++|+|+.|+|||+++..|...+|-.... +.+.+....
T Consensus 47 L~~~~~~d~~~~~~l~~~lg~~L~~-------~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~ 119 (304)
T TIGR01613 47 LLETFGGDNELIEYLQRVIGYSLTG-------NYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEH 119 (304)
T ss_pred HHHHhCCCHHHHHHHHHHHhHHhcC-------CCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCC
Confidence 344443 444555555544332222 13456778999999999999999999988754422 112222110
Q ss_pred HHHHHHHHHccCCeEEEEeccch
Q 011374 288 KDLRQILIATENKSILVVEDIDC 310 (487)
Q Consensus 288 ~~l~~l~~~~~~~sIl~IDeiD~ 310 (487)
+--+.....+.+++.+|++.
T Consensus 120 ---~f~~a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 120 ---RFGLARLEGKRAVIGDEVQK 139 (304)
T ss_pred ---CchhhhhcCCEEEEecCCCC
Confidence 11223345678999999973
No 382
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.01 E-value=0.0021 Score=57.70 Aligned_cols=67 Identities=22% Similarity=0.309 Sum_probs=41.5
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcCCc---EE-----Eeec-CcccChHHHHHHHH---HccCCeEEEEeccchhhh
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFD---VY-----DLEL-SSVEGNKDLRQILI---ATENKSILVVEDIDCCLE 313 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~~~---v~-----~l~~-~~~~~~~~l~~l~~---~~~~~sIl~IDeiD~~~~ 313 (487)
..+..+.|.||+|+|||+|++++++.+... ++ .+.. ..+ +....+++.. -..+|.|+++||-..-++
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~l-S~G~~~rv~laral~~~p~illlDEP~~~LD 102 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQL-SGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccC-CHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 344568899999999999999999987321 10 0000 011 2223333322 236789999999986554
No 383
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.01 E-value=0.00056 Score=65.61 Aligned_cols=29 Identities=28% Similarity=0.498 Sum_probs=26.4
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
|+++||||+|||++++.||..+++..+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 78999999999999999999999877753
No 384
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.00 E-value=0.0016 Score=61.80 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.6
Q ss_pred ccceeeCCCCCcHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMA 269 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA 269 (487)
+.++|.||.|+|||+|.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 385
>PRK06696 uridine kinase; Validated
Probab=96.99 E-value=0.0021 Score=62.03 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=33.1
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChH
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNK 288 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~ 288 (487)
+.-|.+.|+||+||||+|+.||..+ +.+++.+.+.++....
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~ 65 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPR 65 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCH
Confidence 4567889999999999999999999 6777777777765443
No 386
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.98 E-value=0.0059 Score=62.11 Aligned_cols=132 Identities=18% Similarity=0.256 Sum_probs=89.4
Q ss_pred CceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEE
Q 011374 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVY 277 (487)
Q Consensus 201 ~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~ 277 (487)
....+...+-..|+.+++.....+.+++.-..+.- ..-.+|+.|..||||-.+|+|--... ..+++
T Consensus 191 ~~~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~Am-----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFl 259 (511)
T COG3283 191 QLQNVAAQDVSGFEQIVAVSPKMKHVVEQAQKLAM-----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFL 259 (511)
T ss_pred HHhhcccccccchHHHhhccHHHHHHHHHHHHhhc-----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCee
Confidence 44555566677899999987777777665543321 12348999999999999999865544 67999
Q ss_pred EeecCcccChHHHHHHHHHc------------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHH
Q 011374 278 DLELSSVEGNKDLRQILIAT------------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLL 345 (487)
Q Consensus 278 ~l~~~~~~~~~~l~~l~~~~------------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 345 (487)
.++|..+-.+..=.++|... .+..-+|+|||..+ +......||
T Consensus 260 alNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEm-------------------------Sp~lQaKLL 314 (511)
T COG3283 260 ALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEM-------------------------SPRLQAKLL 314 (511)
T ss_pred EeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhc-------------------------CHHHHHHHH
Confidence 99999985444444555333 34578899999644 344555677
Q ss_pred HHh-hccccCCCCc------eEEEEecCCC
Q 011374 346 NFI-DGLWSSCGDE------RIIIFTTNHK 368 (487)
Q Consensus 346 ~~l-Dgl~s~~~~~------~iiI~TTN~~ 368 (487)
.++ ||....-|++ +-||+||..+
T Consensus 315 RFL~DGtFRRVGee~Ev~vdVRVIcatq~n 344 (511)
T COG3283 315 RFLNDGTFRRVGEDHEVHVDVRVICATQVN 344 (511)
T ss_pred HHhcCCceeecCCcceEEEEEEEEeccccc
Confidence 776 6655444443 4678888653
No 387
>PRK14527 adenylate kinase; Provisional
Probab=96.96 E-value=0.00055 Score=64.40 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=26.7
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
+.-++++||||+|||++++.+|..+++..+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 3458999999999999999999999876553
No 388
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.96 E-value=0.0023 Score=61.97 Aligned_cols=63 Identities=21% Similarity=0.327 Sum_probs=41.9
Q ss_pred cccceeeCCCCCcHHHHHHHHHH-Hc----CCc---------EE-----EeecC-ccc--------ChHHHHHHHHHccC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMAN-YL----NFD---------VY-----DLELS-SVE--------GNKDLRQILIATEN 299 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~-~l----~~~---------v~-----~l~~~-~~~--------~~~~l~~l~~~~~~ 299 (487)
.+-++|.||.|+|||++.+.++. .+ |.. ++ .+... ++. .-..+..++..+..
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 45689999999999999999987 22 221 11 11111 110 12445677777888
Q ss_pred CeEEEEeccch
Q 011374 300 KSILVVEDIDC 310 (487)
Q Consensus 300 ~sIl~IDeiD~ 310 (487)
+++++|||+..
T Consensus 111 ~sLvllDE~~~ 121 (222)
T cd03287 111 RSLVILDELGR 121 (222)
T ss_pred CeEEEEccCCC
Confidence 99999999964
No 389
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.95 E-value=0.0036 Score=65.13 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.8
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
..+|+.||+|+||||++++++.++
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999887
No 390
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.95 E-value=0.0013 Score=62.87 Aligned_cols=64 Identities=20% Similarity=0.323 Sum_probs=39.7
Q ss_pred cccceeeCCCCCcHHHHHHHHHHH-----cCCcE---------E-----EeecCc-cc--------ChHHHHHHHHHccC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANY-----LNFDV---------Y-----DLELSS-VE--------GNKDLRQILIATEN 299 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~-----l~~~v---------~-----~l~~~~-~~--------~~~~l~~l~~~~~~ 299 (487)
++-++|.||.|+|||++.+.++.. +|+.+ + .+...+ +. .-..+..++..+.+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~ 108 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADG 108 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCC
Confidence 356899999999999999998733 34332 1 011110 10 11234445555678
Q ss_pred CeEEEEeccchh
Q 011374 300 KSILVVEDIDCC 311 (487)
Q Consensus 300 ~sIl~IDeiD~~ 311 (487)
++++++||+..-
T Consensus 109 ~~lvllDE~~~g 120 (204)
T cd03282 109 DSLVLIDELGRG 120 (204)
T ss_pred CcEEEeccccCC
Confidence 999999999643
No 391
>PRK04182 cytidylate kinase; Provisional
Probab=96.95 E-value=0.00066 Score=62.52 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=26.3
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
++|.|+||||||++++.+|..+++++++
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 6899999999999999999999998885
No 392
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.94 E-value=0.0018 Score=59.87 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.3
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
-++|.||+|+|||++++.|++.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4789999999999999999997654
No 393
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.92 E-value=0.0022 Score=60.82 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=22.4
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
|+-++|.||+|+||||.+.-+|.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4568999999999999999999887
No 394
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.91 E-value=0.0022 Score=58.79 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.4
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.++..+.|.||.|+|||+|.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999999876
No 395
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.89 E-value=0.00056 Score=59.08 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.8
Q ss_pred ceeeCCCCCcHHHHHHHHHHHc
Q 011374 251 YLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l 272 (487)
|+|.|+||+||||+++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999988
No 396
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.88 E-value=0.0027 Score=64.29 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=23.4
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
++++|+.||+|+||||+++++++++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999987
No 397
>PRK09354 recA recombinase A; Provisional
Probab=96.88 E-value=0.0032 Score=64.74 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=42.7
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc---------------------cChHHHHHHH---HH
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV---------------------EGNKDLRQIL---IA 296 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~---------------------~~~~~l~~l~---~~ 296 (487)
|.+..+-+++|||||||||+|+..++... +...+.++...- .+......++ ..
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 46666678999999999999998655332 444444443321 1111111122 22
Q ss_pred ccCCeEEEEeccchhhh
Q 011374 297 TENKSILVVEDIDCCLE 313 (487)
Q Consensus 297 ~~~~sIl~IDeiD~~~~ 313 (487)
.....+||||-|-.+..
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 34578999999998864
No 398
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.87 E-value=0.00063 Score=61.38 Aligned_cols=26 Identities=27% Similarity=0.545 Sum_probs=23.1
Q ss_pred eeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 253 LYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 253 L~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
|.||||+|||++++.||..+++..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 57999999999999999999876654
No 399
>PLN02199 shikimate kinase
Probab=96.87 E-value=0.0017 Score=65.13 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=30.7
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
++.++|.|++|+|||++++.+|+.+++++++.|
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 468999999999999999999999999999876
No 400
>PRK01184 hypothetical protein; Provisional
Probab=96.85 E-value=0.00088 Score=62.44 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.7
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
-++|.||||+||||+++ ++..+++++++.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47889999999999887 889999888654
No 401
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.85 E-value=0.00091 Score=61.14 Aligned_cols=29 Identities=28% Similarity=0.612 Sum_probs=26.5
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
+.+.|+||+|||++++.+|+.+++++++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 67999999999999999999999998753
No 402
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.84 E-value=0.0028 Score=61.03 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=38.9
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH-----cCCcE---------EEeecCccc-------Ch-------HHHHHHHHHccCC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY-----LNFDV---------YDLELSSVE-------GN-------KDLRQILIATENK 300 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~-----l~~~v---------~~l~~~~~~-------~~-------~~l~~l~~~~~~~ 300 (487)
+-++|.||.|+|||++.+.+|.. .+..+ +.--...+. .. ..+..++..+.++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 45789999999999999998742 22221 110011110 11 1355566667889
Q ss_pred eEEEEeccc
Q 011374 301 SILVVEDID 309 (487)
Q Consensus 301 sIl~IDeiD 309 (487)
+++++||..
T Consensus 111 ~llllDEp~ 119 (216)
T cd03284 111 SLVLLDEIG 119 (216)
T ss_pred eEEEEecCC
Confidence 999999984
No 403
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.84 E-value=0.0021 Score=55.20 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=20.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
++++++||+|+|||.++.+.+..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999888777666
No 404
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.83 E-value=0.011 Score=64.02 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=20.7
Q ss_pred ceeeCCCCCcHHHHHHHHHHHc
Q 011374 251 YLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l 272 (487)
.||.||||||||+|+..||+.+
T Consensus 419 ~LIvgpp~aGKTtLL~~IAn~i 440 (672)
T PRK12678 419 GLIVSPPKAGKTTILQNIANAI 440 (672)
T ss_pred eEEeCCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999965
No 405
>PRK10867 signal recognition particle protein; Provisional
Probab=96.83 E-value=0.034 Score=59.04 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=30.5
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc----CCcEEEeecCccc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELSSVE 285 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l----~~~v~~l~~~~~~ 285 (487)
.+.-+++.||||+||||++.-+|.++ +..+..+++....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 45678999999999999999888766 5667767666543
No 406
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.83 E-value=0.00078 Score=61.56 Aligned_cols=26 Identities=38% Similarity=0.653 Sum_probs=21.0
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEE
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVY 277 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~ 277 (487)
|.|.|+||||||||+++||.. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 679999999999999999999 87766
No 407
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.82 E-value=0.0039 Score=58.20 Aligned_cols=67 Identities=16% Similarity=0.240 Sum_probs=39.9
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCc--EEEeec-------Ccc-cChHHHHHHH---HHccCCeEEEEeccchhhh
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFD--VYDLEL-------SSV-EGNKDLRQIL---IATENKSILVVEDIDCCLE 313 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~--v~~l~~-------~~~-~~~~~l~~l~---~~~~~~sIl~IDeiD~~~~ 313 (487)
.+.-+.|.||.|+|||||++.|++.+..+ -+.++. ... -+...-+++- .-+.+|.++++||--.-++
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 34557899999999999999999976321 011111 110 1111112221 1235789999999976554
No 408
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.82 E-value=0.0017 Score=64.70 Aligned_cols=62 Identities=23% Similarity=0.374 Sum_probs=34.7
Q ss_pred ceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc----------cChHHHHHHHHH-----ccCCeEEEEeccchhh
Q 011374 251 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV----------EGNKDLRQILIA-----TENKSILVVEDIDCCL 312 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~----------~~~~~l~~l~~~-----~~~~sIl~IDeiD~~~ 312 (487)
++|+|.||+|||++|+.|+.++ +..+..++-..+ ..+..++..+.. .....|+++|+..-+-
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYiK 83 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYIK 83 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---SH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchHH
Confidence 6899999999999999999986 456655543222 123444444322 2456899999987653
No 409
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.82 E-value=0.028 Score=54.90 Aligned_cols=126 Identities=17% Similarity=0.271 Sum_probs=75.3
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCC---cEEEeecCc---------------ccChHHHHH-----------HHHHc-
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNF---DVYDLELSS---------------VEGNKDLRQ-----------ILIAT- 297 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~---~v~~l~~~~---------------~~~~~~l~~-----------l~~~~- 297 (487)
+-.+.+.||+|||||+++..+-..+.. +++.+.... +.....+.. .....
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 346889999999999999988877643 222221100 011112211 11111
Q ss_pred ----cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCc
Q 011374 298 ----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDP 373 (487)
Q Consensus 298 ----~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ 373 (487)
..+.+|+|||+..- ......+..+++ -|- --++-+|+++-..-.|||
T Consensus 93 ~~k~~~~~LiIlDD~~~~-----------------------~~k~~~l~~~~~--~gR----H~~is~i~l~Q~~~~lp~ 143 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGDK-----------------------KLKSKILRQFFN--NGR----HYNISIIFLSQSYFHLPP 143 (241)
T ss_pred ccCCCCCeEEEEeCCCCc-----------------------hhhhHHHHHHHh--ccc----ccceEEEEEeeecccCCH
Confidence 22689999997421 011223445554 121 124677888888889999
Q ss_pred cccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011374 374 ALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 405 (487)
Q Consensus 374 ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 405 (487)
.++. -++.++-+. -+..+++.+++++...
T Consensus 144 ~iR~--n~~y~i~~~-~s~~dl~~i~~~~~~~ 172 (241)
T PF04665_consen 144 NIRS--NIDYFIIFN-NSKRDLENIYRNMNIK 172 (241)
T ss_pred HHhh--cceEEEEec-CcHHHHHHHHHhcccc
Confidence 9866 678888776 5788888888887643
No 410
>PRK13764 ATPase; Provisional
Probab=96.81 E-value=0.0028 Score=69.67 Aligned_cols=63 Identities=24% Similarity=0.420 Sum_probs=40.2
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC---CcEEEee------cCc-c------c-ChHHHHHHHHHccCCeEEEEeccch
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLE------LSS-V------E-GNKDLRQILIATENKSILVVEDIDC 310 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~---~~v~~l~------~~~-~------~-~~~~l~~l~~~~~~~sIl~IDeiD~ 310 (487)
++++|+.||||+||||+++|+++++. ..+..++ +.. + . +...+...+ -..+|-+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~~~~~~~~~l-LR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEGSMEETADIL-LLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeeccccHHHHHHHH-HhhCCCEEEECCCCC
Confidence 57899999999999999999999885 3332321 111 1 0 111122222 135689999999974
Q ss_pred h
Q 011374 311 C 311 (487)
Q Consensus 311 ~ 311 (487)
.
T Consensus 336 ~ 336 (602)
T PRK13764 336 T 336 (602)
T ss_pred H
Confidence 3
No 411
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.80 E-value=0.003 Score=59.19 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=39.8
Q ss_pred ceeeCCCCCcHHHHHHHHHH-----HcCCcE---------E-----EeecCcc---------cChHHHHHHHHHccCCeE
Q 011374 251 YLLYGPPGTGKSSLIAAMAN-----YLNFDV---------Y-----DLELSSV---------EGNKDLRQILIATENKSI 302 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~-----~l~~~v---------~-----~l~~~~~---------~~~~~l~~l~~~~~~~sI 302 (487)
++|+||.|.|||++.+.++- ..|..+ + .+...+. ..-..+..++..+..+++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999982 223322 1 1111111 012334455555668999
Q ss_pred EEEeccchhhh
Q 011374 303 LVVEDIDCCLE 313 (487)
Q Consensus 303 l~IDeiD~~~~ 313 (487)
+++||+..-++
T Consensus 82 lllDEp~~g~d 92 (185)
T smart00534 82 VLLDELGRGTS 92 (185)
T ss_pred EEEecCCCCCC
Confidence 99999976543
No 412
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.016 Score=60.91 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=26.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc----CCcEEEeecCc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELSS 283 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l----~~~v~~l~~~~ 283 (487)
+..++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 3458899999999999999999754 34454444443
No 413
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.79 E-value=0.0011 Score=61.99 Aligned_cols=32 Identities=38% Similarity=0.664 Sum_probs=25.2
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~ 283 (487)
.+++.||||+||||+|+.||+.++ +..++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd 33 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGD 33 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhH
Confidence 378999999999999999999954 44444333
No 414
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.78 E-value=0.001 Score=66.92 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=25.9
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc-CCcEEEe
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL-NFDVYDL 279 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l-~~~v~~l 279 (487)
.-++|.|||||||||+++.++..+ +..+++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 457889999999999999999999 6655543
No 415
>PRK06851 hypothetical protein; Provisional
Probab=96.77 E-value=0.013 Score=60.77 Aligned_cols=26 Identities=38% Similarity=0.658 Sum_probs=23.5
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
..+-++|.|+||||||++++.++..+
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~ 54 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEF 54 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999877
No 416
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.76 E-value=0.0026 Score=60.32 Aligned_cols=24 Identities=50% Similarity=0.843 Sum_probs=21.6
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcC
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
-+++.||+|+||||++++++.++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 368899999999999999998884
No 417
>PRK14526 adenylate kinase; Provisional
Probab=96.76 E-value=0.0012 Score=63.46 Aligned_cols=28 Identities=32% Similarity=0.704 Sum_probs=25.1
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
++|.||||+||||+++.+|..+++..+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999999876653
No 418
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.74 E-value=0.0036 Score=60.18 Aligned_cols=25 Identities=36% Similarity=0.693 Sum_probs=21.8
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
.+.|+.|||||||||+.+-+|.-+.
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhh
Confidence 3578999999999999999998763
No 419
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.73 E-value=0.0022 Score=56.20 Aligned_cols=65 Identities=23% Similarity=0.300 Sum_probs=43.1
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCC--------------------cEEEeecCcccChHHHHHH--HHHccCCeEEE
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF--------------------DVYDLELSSVEGNKDLRQI--LIATENKSILV 304 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~--------------------~v~~l~~~~~~~~~~l~~l--~~~~~~~sIl~ 304 (487)
...-++|+|+=|+|||++++++|..++. +++.+|+=.+.+...+..+ +......+|.+
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~ 93 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICV 93 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEE
Confidence 3456899999999999999999999954 3444555555555554443 22335578888
Q ss_pred Eeccchh
Q 011374 305 VEDIDCC 311 (487)
Q Consensus 305 IDeiD~~ 311 (487)
||=.+.+
T Consensus 94 IEW~e~~ 100 (123)
T PF02367_consen 94 IEWPERL 100 (123)
T ss_dssp EESGGGG
T ss_pred EECcccc
Confidence 8866554
No 420
>PTZ00035 Rad51 protein; Provisional
Probab=96.72 E-value=0.0082 Score=61.78 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=23.3
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHH
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
|++.+.-+.++||||||||+|+..+|..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 5566666889999999999999988753
No 421
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.71 E-value=0.042 Score=52.95 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=26.5
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
-+.+.||+||||||+++.+|..+++.+++-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~ 33 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDS 33 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeC
Confidence 467899999999999999999999887753
No 422
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.71 E-value=0.0016 Score=58.83 Aligned_cols=30 Identities=37% Similarity=0.533 Sum_probs=25.4
Q ss_pred ceeeCCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011374 251 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~ 280 (487)
+++.|+||+|||++++.++..+ +.+++.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6789999999999999999998 65655554
No 423
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.0066 Score=65.50 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=42.1
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc-----CCcEEEeecCcc----------------------cChHHHHHHHHHccC
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELSSV----------------------EGNKDLRQILIATEN 299 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l-----~~~v~~l~~~~~----------------------~~~~~l~~l~~~~~~ 299 (487)
++..+.|.||+|+|||+++..||..+ +..+..++.... .+...+...+.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 45568899999999999999998764 223433332221 223455666666666
Q ss_pred CeEEEEeccch
Q 011374 300 KSILVVEDIDC 310 (487)
Q Consensus 300 ~sIl~IDeiD~ 310 (487)
..+||||..-.
T Consensus 429 ~DLVLIDTaG~ 439 (559)
T PRK12727 429 YKLVLIDTAGM 439 (559)
T ss_pred CCEEEecCCCc
Confidence 77888888754
No 424
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.68 E-value=0.0056 Score=56.00 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=19.5
Q ss_pred ccceeeCCCCCcHHH-HHHHHHHHcC
Q 011374 249 RGYLLYGPPGTGKSS-LIAAMANYLN 273 (487)
Q Consensus 249 rg~LL~GPPGtGKTs-La~alA~~l~ 273 (487)
+.+++.||+|||||. ++..+...+.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhc
Confidence 578999999999999 5555555543
No 425
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.67 E-value=0.0014 Score=61.47 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=25.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
..+.|.||+|+|||||++.||..++.+++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 357899999999999999999998876543
No 426
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.66 E-value=0.0015 Score=62.14 Aligned_cols=35 Identities=37% Similarity=0.542 Sum_probs=27.4
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV 284 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~ 284 (487)
-++++||+|||||.++-++|+.+|.+++.+|--.+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 37899999999999999999999999998875544
No 427
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.65 E-value=0.046 Score=53.50 Aligned_cols=156 Identities=19% Similarity=0.227 Sum_probs=87.1
Q ss_pred Cccc-ceeeCCCCCcHHHHHHHHHHHcCCcE---EEeecCcccC--------------------------hHHHHHHHHH
Q 011374 247 WKRG-YLLYGPPGTGKSSLIAAMANYLNFDV---YDLELSSVEG--------------------------NKDLRQILIA 296 (487)
Q Consensus 247 ~~rg-~LL~GPPGtGKTsLa~alA~~l~~~v---~~l~~~~~~~--------------------------~~~l~~l~~~ 296 (487)
..+| +.++|+-|+|||.+.+|+...++-+- +.++-..+.. ...|..++.+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~ 128 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKK 128 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHh
Confidence 3454 56899999999999998887775332 2233222211 1222333334
Q ss_pred ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCc---
Q 011374 297 TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDP--- 373 (487)
Q Consensus 297 ~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~--- 373 (487)
-.++.++++||.+.+.. ..-..+.-|.|.-++... .-.+++|+ +| +|.|
T Consensus 129 g~r~v~l~vdEah~L~~----------------------~~le~Lrll~nl~~~~~~--~l~ivL~G---qp-~L~~~lr 180 (269)
T COG3267 129 GKRPVVLMVDEAHDLND----------------------SALEALRLLTNLEEDSSK--LLSIVLIG---QP-KLRPRLR 180 (269)
T ss_pred CCCCeEEeehhHhhhCh----------------------hHHHHHHHHHhhcccccC--ceeeeecC---Cc-ccchhhc
Confidence 45679999999997732 112223333333333211 11233333 22 2233
Q ss_pred -----cccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC--CCCchH--HHHHHHhhcCCCHHHHHHHH
Q 011374 374 -----ALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT--EHPLFL--EVEELIEKVEVTPADVAEQL 432 (487)
Q Consensus 374 -----ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~--~~~l~~--~i~~l~~~~~~spa~i~~~l 432 (487)
.+.. |++..|++++.+.++....++..|+.. ..+++. .+..+-...+-.|..|.+.+
T Consensus 181 ~~~l~e~~~--R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 181 LPVLRELEQ--RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred hHHHHhhhh--eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 2234 999889999999998777777777543 334432 23333333445787777766
No 428
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.65 E-value=0.0079 Score=55.78 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=23.4
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
..+..+.|.||+|+|||+|+++||+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345568899999999999999999876
No 429
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.65 E-value=0.0024 Score=57.67 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=36.2
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHH
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQIL 294 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~ 294 (487)
+.+-.+++-|+.||||||++++++.++++++++ ..+++..++..++-
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~d--gDd~Hp~~NveKM~ 56 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFID--GDDLHPPANVEKMT 56 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccc--cccCCCHHHHHHHh
Confidence 344567888999999999999999999999974 44566566555443
No 430
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.63 E-value=0.012 Score=60.50 Aligned_cols=131 Identities=19% Similarity=0.260 Sum_probs=78.4
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccC----------------------------hHHHHHHHHHc
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG----------------------------NKDLRQILIAT 297 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~----------------------------~~~l~~l~~~~ 297 (487)
..|..+.|||-.|||||.+++.+-+.++.+.+.+++-+.-+ -.++..+|.+.
T Consensus 28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~ 107 (438)
T KOG2543|consen 28 TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQW 107 (438)
T ss_pred ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhh
Confidence 34567799999999999999999999988877766544311 12223334331
Q ss_pred ---c---CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCC
Q 011374 298 ---E---NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRL 371 (487)
Q Consensus 298 ---~---~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~L 371 (487)
. ....|++|.+|.+-+ .....+..|+..-.-+ +...+.|.++-++. .
T Consensus 108 ~~~t~~d~~~~liLDnad~lrD----------------------~~a~ll~~l~~L~el~----~~~~i~iils~~~~-e 160 (438)
T KOG2543|consen 108 PAATNRDQKVFLILDNADALRD----------------------MDAILLQCLFRLYELL----NEPTIVIILSAPSC-E 160 (438)
T ss_pred HHhhccCceEEEEEcCHHhhhc----------------------cchHHHHHHHHHHHHh----CCCceEEEEecccc-H
Confidence 1 246889999998732 2345556655433322 12234444333211 0
Q ss_pred CccccCCCcee-eEEEeCCCCHHHHHHHHHHhh
Q 011374 372 DPALLRPGRMD-VHIHMSYCTPCGFKMLASNYL 403 (487)
Q Consensus 372 D~ALlRpGRfd-~~I~~~~p~~~~~~~l~~~~l 403 (487)
+.-+.+.|-++ ..++||.++.++.++|+.+-.
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 11222334443 467999999999988886533
No 431
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.62 E-value=0.0018 Score=63.57 Aligned_cols=31 Identities=42% Similarity=0.583 Sum_probs=25.9
Q ss_pred ceeeCCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011374 251 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~ 281 (487)
++|.|+||+||||+|+++|..+ +.+++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 6899999999999999999988 456665543
No 432
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.60 E-value=0.0052 Score=60.89 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=55.4
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHH------HHcCCcEEEeecCcccChHHHHHHHHHc-----------------cCC
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMA------NYLNFDVYDLELSSVEGNKDLRQILIAT-----------------ENK 300 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA------~~l~~~v~~l~~~~~~~~~~l~~l~~~~-----------------~~~ 300 (487)
.+..+..+||.||.|.|||.|++.|- +.+.-+++.++|..+.++..+..+|... ...
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadg 283 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADG 283 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCC
Confidence 33445669999999999999999874 4457789999999998888888887543 235
Q ss_pred eEEEEeccchhh
Q 011374 301 SILVVEDIDCCL 312 (487)
Q Consensus 301 sIl~IDeiD~~~ 312 (487)
..||+|||..+.
T Consensus 284 gmlfldeigelg 295 (531)
T COG4650 284 GMLFLDEIGELG 295 (531)
T ss_pred ceEehHhhhhcC
Confidence 799999998774
No 433
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.005 Score=56.89 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=32.2
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV 284 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~ 284 (487)
+..+.|.|.+|+||||+|.|++..| |+.+|.+|...+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 3456788999999999999999987 899999987776
No 434
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.58 E-value=0.0086 Score=57.01 Aligned_cols=37 Identities=35% Similarity=0.364 Sum_probs=27.3
Q ss_pred cHHHHHHhc--CCCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 236 RKEFYKRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 236 ~~~~y~~~g--~~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+.+.-+++| +|.+.-+|+.|+-|||||-|.+.+|.=+
T Consensus 14 ndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~ 52 (235)
T COG2874 14 NDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGF 52 (235)
T ss_pred cHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHH
Confidence 345555665 4555557889999999999999988533
No 435
>PLN02674 adenylate kinase
Probab=96.57 E-value=0.002 Score=63.23 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=26.8
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
...++|.||||+||||+++.||..+++..+.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 3558999999999999999999999876653
No 436
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0094 Score=55.69 Aligned_cols=24 Identities=33% Similarity=0.674 Sum_probs=21.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
--+.+.||.|+|||||.+.+|..+
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHccc
Confidence 347789999999999999999987
No 437
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.56 E-value=0.0019 Score=61.31 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=25.4
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcE
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDV 276 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v 276 (487)
+.-+++.|+||+|||++++.+|..++..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 34688999999999999999999988754
No 438
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.56 E-value=0.0079 Score=55.46 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.5
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
..+.-+.|.||+|+|||+|.++||+.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345568899999999999999999987
No 439
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.56 E-value=0.0021 Score=59.94 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=26.1
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
+.|+|+||+||||+++.+++ +|+++++.|
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 67899999999999999999 898887665
No 440
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.53 E-value=0.0091 Score=54.34 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.6
Q ss_pred ceeeCCCCCcHHHHHHHHHHHc
Q 011374 251 YLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l 272 (487)
++|.|+||+|||+|+.++++..
T Consensus 4 i~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999988544
No 441
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.52 E-value=0.0023 Score=70.05 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=29.7
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~ 281 (487)
-++|.|+||+||||+.+.+|+.++++++++|.
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 37899999999999999999999999999874
No 442
>PRK14529 adenylate kinase; Provisional
Probab=96.51 E-value=0.0019 Score=62.56 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=25.2
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEE
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVY 277 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~ 277 (487)
++|.||||+||||+++.||..++++.+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 789999999999999999999998766
No 443
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.49 E-value=0.0031 Score=62.31 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=31.3
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~ 283 (487)
|.+.++.+|++|+||||||+++..++... |.+++.+....
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 56777889999999999999999877654 56666665544
No 444
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.49 E-value=0.0074 Score=61.53 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=38.4
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---------CCcEEEeecCcccChHHHHHHHHH
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELSSVEGNKDLRQILIA 296 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---------~~~v~~l~~~~~~~~~~l~~l~~~ 296 (487)
|++.+.-++++||||||||+++..+|-.. +..++.++...--....+.++...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~ 159 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEA 159 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHH
Confidence 56666778999999999999999888653 336777776654345666666544
No 445
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.49 E-value=0.006 Score=58.91 Aligned_cols=63 Identities=19% Similarity=0.324 Sum_probs=41.8
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc-----CCc---------EE-----EeecC-ccc--------ChHHHHHHHHHccC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL-----NFD---------VY-----DLELS-SVE--------GNKDLRQILIATEN 299 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l-----~~~---------v~-----~l~~~-~~~--------~~~~l~~l~~~~~~ 299 (487)
++.++|.||.|.|||++.+.++... |.+ ++ .+... ++. .-.++..++..+..
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 109 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATP 109 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCC
Confidence 4568999999999999999887543 321 11 11111 110 12445667777889
Q ss_pred CeEEEEeccch
Q 011374 300 KSILVVEDIDC 310 (487)
Q Consensus 300 ~sIl~IDeiD~ 310 (487)
+++++|||+..
T Consensus 110 ~sLvLlDE~~~ 120 (218)
T cd03286 110 DSLVILDELGR 120 (218)
T ss_pred CeEEEEecccC
Confidence 99999999864
No 446
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.49 E-value=0.0091 Score=55.14 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=22.3
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+.-+.|.||.|+|||+|.++||..+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4458899999999999999999876
No 447
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.48 E-value=0.003 Score=58.40 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.4
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+.-+.|.|+||+|||++++++|..+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999987
No 448
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.47 E-value=0.0067 Score=61.94 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=23.2
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+.++|+.||+|+||||+++|++.++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999986
No 449
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.47 E-value=0.017 Score=65.37 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=40.2
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc---C--CcEEEeecCcc----------cChHHHHHHHHHc------------cCCe
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL---N--FDVYDLELSSV----------EGNKDLRQILIAT------------ENKS 301 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l---~--~~v~~l~~~~~----------~~~~~l~~l~~~~------------~~~s 301 (487)
+-.+|.|+||||||++++++...+ + ..++.+-.+.- .....+.+++... ....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 457899999999999999987665 3 45554443321 0123344444321 1347
Q ss_pred EEEEeccchh
Q 011374 302 ILVVEDIDCC 311 (487)
Q Consensus 302 Il~IDeiD~~ 311 (487)
+|+|||+..+
T Consensus 419 llIvDEaSMv 428 (720)
T TIGR01448 419 LLIVDESSMM 428 (720)
T ss_pred EEEEeccccC
Confidence 9999999765
No 450
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.46 E-value=0.0048 Score=68.17 Aligned_cols=28 Identities=36% Similarity=0.599 Sum_probs=24.5
Q ss_pred CCCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 245 KAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 245 ~~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
++++.-+.+.||+|+|||||++.+++.+
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556669999999999999999999876
No 451
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.45 E-value=0.0054 Score=66.95 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.6
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+++..+|+.||+|||||||.+|||+.-
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 455569999999999999999999865
No 452
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.44 E-value=0.0036 Score=66.09 Aligned_cols=138 Identities=21% Similarity=0.215 Sum_probs=78.7
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCc--cc-ChHHHHHHH------HH----ccCCeEEEEeccchhhhhhh
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS--VE-GNKDLRQIL------IA----TENKSILVVEDIDCCLEMQD 316 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~--~~-~~~~l~~l~------~~----~~~~sIl~IDeiD~~~~~~~ 316 (487)
+++|-|.||..||-|.+.+.+.....+|.---++ +. +..-++.-. .. .....|.+|||+|.+.+. +
T Consensus 377 NicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-D 455 (721)
T KOG0482|consen 377 NICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-D 455 (721)
T ss_pred eEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-h
Confidence 3899999999999999999998877777543222 11 111111100 00 135689999999998542 2
Q ss_pred HHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCC-------------CCCCccccCCCceee
Q 011374 317 RLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHK-------------DRLDPALLRPGRMDV 383 (487)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~-------------~~LD~ALlRpGRfd~ 383 (487)
|..--... + .+.-...-.++...+. -..-|+++.|.. =.|++||++ |||.
T Consensus 456 RtAIHEVM-----E---QQTISIaKAGI~TtLN-------AR~sILaAANPayGRYnprrs~e~NI~LPaALLS--RFDl 518 (721)
T KOG0482|consen 456 RTAIHEVM-----E---QQTISIAKAGINTTLN-------ARTSILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDL 518 (721)
T ss_pred hHHHHHHH-----H---hhhhhhhhhccccchh-------hhHHhhhhcCccccccCcccChhHhcCCcHHHHH--hhhh
Confidence 22110000 0 0000111112222111 112356666643 147899999 9998
Q ss_pred EEEe-CCCCHHHHHHHHHHhhCc
Q 011374 384 HIHM-SYCTPCGFKMLASNYLGI 405 (487)
Q Consensus 384 ~I~~-~~p~~~~~~~l~~~~l~~ 405 (487)
..-+ ..|+.+.=+.|+++..-+
T Consensus 519 l~Li~D~pdrd~D~~LA~HiTyV 541 (721)
T KOG0482|consen 519 LWLIQDRPDRDNDLRLAQHITYV 541 (721)
T ss_pred hhhhccCCcccchHHHHHHhHhh
Confidence 6655 788888888888875544
No 453
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.44 E-value=0.01 Score=55.28 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=20.7
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHH
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~ 270 (487)
..+.-+.|.||.|+|||||.++++.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3445578999999999999999964
No 454
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0036 Score=59.20 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=22.0
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
++|.|+||+|||++++-+|..|.-
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 689999999999999999999943
No 455
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.43 E-value=0.0031 Score=58.31 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.2
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-++|.|+||+||||+++++++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44678999999999999999999886
No 456
>PRK10646 ADP-binding protein; Provisional
Probab=96.43 E-value=0.022 Score=51.81 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=24.0
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
+.-++|.|+=|+|||++++++|..++.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 345889999999999999999999974
No 457
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.42 E-value=0.0076 Score=55.15 Aligned_cols=65 Identities=25% Similarity=0.452 Sum_probs=40.0
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc---------------CCcEEEee----cCc--cc-Ch---HHHHHHHHHcc--CCe
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL---------------NFDVYDLE----LSS--VE-GN---KDLRQILIATE--NKS 301 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l---------------~~~v~~l~----~~~--~~-~~---~~l~~l~~~~~--~~s 301 (487)
+..++.||.|+|||++.++++-.+ ++.+-..+ ... +. .. ..+...+...+ .+.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 467899999999999999986443 22222222 111 11 12 22334444433 789
Q ss_pred EEEEeccchhhh
Q 011374 302 ILVVEDIDCCLE 313 (487)
Q Consensus 302 Il~IDeiD~~~~ 313 (487)
++++||+..-++
T Consensus 102 llllDEp~~gld 113 (162)
T cd03227 102 LYILDEIDRGLD 113 (162)
T ss_pred EEEEeCCCCCCC
Confidence 999999986654
No 458
>PLN02459 probable adenylate kinase
Probab=96.39 E-value=0.0033 Score=62.14 Aligned_cols=29 Identities=21% Similarity=0.494 Sum_probs=25.6
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
.++|.||||+|||++++.+|..+++..+.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is 59 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIA 59 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 37889999999999999999999876653
No 459
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.39 E-value=0.0068 Score=61.50 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=30.1
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---------CCcEEEeecCc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELSS 283 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---------~~~v~~l~~~~ 283 (487)
|++.+.-++++||||||||+++..+|... +-.++.++...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56666668999999999999999887653 23566666554
No 460
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.39 E-value=0.0039 Score=60.81 Aligned_cols=39 Identities=28% Similarity=0.259 Sum_probs=29.4
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHH---cCCcEEEeecC
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANY---LNFDVYDLELS 282 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~---l~~~v~~l~~~ 282 (487)
|.+.+..+|++||||||||+|+..++.. -|.+++.+.+.
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 6777788999999999999999866543 25566656544
No 461
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.37 E-value=0.006 Score=67.28 Aligned_cols=28 Identities=21% Similarity=0.390 Sum_probs=24.5
Q ss_pred CCCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 245 KAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 245 ~~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
++++.-+.+.||.|+|||||++.|++.+
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3455669999999999999999999987
No 462
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.37 E-value=0.017 Score=52.01 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.8
Q ss_pred ceeeCCCCCcHHHHHHHHHHH
Q 011374 251 YLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~ 271 (487)
+++.|+||+|||+|+.++.+.
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999999863
No 463
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.36 E-value=0.0079 Score=62.06 Aligned_cols=26 Identities=42% Similarity=0.788 Sum_probs=22.7
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+..+|+.||+|+||||+++++.+++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34578999999999999999998774
No 464
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.34 E-value=0.1 Score=50.59 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=23.7
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
.+.-+.|.||+|+|||||++.+++.+..
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3456778999999999999999998854
No 465
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.34 E-value=0.0026 Score=58.91 Aligned_cols=25 Identities=28% Similarity=0.382 Sum_probs=22.4
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
-++|.||||+|||+++++||..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4689999999999999999998764
No 466
>PRK12338 hypothetical protein; Provisional
Probab=96.34 E-value=0.0029 Score=64.21 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=25.8
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcE
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDV 276 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v 276 (487)
|.-+++.|+|||||||+++++|..++...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 45688999999999999999999998754
No 467
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.34 E-value=0.22 Score=52.94 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=30.4
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc----CCcEEEeecCccc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELSSVE 285 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l----~~~v~~l~~~~~~ 285 (487)
.|..+++.||||+||||++..+|.++ +..+..+++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 35678999999999999999988774 4567666666543
No 468
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.0084 Score=62.24 Aligned_cols=38 Identities=24% Similarity=0.228 Sum_probs=29.1
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV 284 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~ 284 (487)
.++.++|.||+|+||||++..+|..+ +..+..+++...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 35568899999999999999999876 455555555444
No 469
>PLN02165 adenylate isopentenyltransferase
Probab=96.32 E-value=0.0032 Score=64.21 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=29.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~ 282 (487)
+..+.|.||+|+|||+|+..||..++..++..|--
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 34588999999999999999999999877765543
No 470
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.31 E-value=0.012 Score=52.90 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=19.0
Q ss_pred ceeeCCCCCcHHHHHHHHHHH
Q 011374 251 YLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~ 271 (487)
+++.|+||+|||+|+.++.+.
T Consensus 3 i~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999864
No 471
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.31 E-value=0.0058 Score=66.61 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=24.3
Q ss_pred CCCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 245 KAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 245 ~~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
++++.-+.+.||+|+|||||++.+++.+
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455669999999999999999999877
No 472
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.30 E-value=0.01 Score=60.34 Aligned_cols=29 Identities=17% Similarity=0.479 Sum_probs=25.3
Q ss_pred CCCcccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 245 ~~~~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
...+..+++.||+|+||||+++++++.+.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 34567899999999999999999998873
No 473
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.30 E-value=0.0064 Score=60.54 Aligned_cols=63 Identities=22% Similarity=0.389 Sum_probs=47.5
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccC----hHHHHHHHHHc---cCCeEEEEeccc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG----NKDLRQILIAT---ENKSILVVEDID 309 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~----~~~l~~l~~~~---~~~sIl~IDeiD 309 (487)
++...||.|++|+||.|+++..|...++.++.+..+.-.+ ..+|+.++..+ ..+++++|+|-+
T Consensus 30 ~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 30 PRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp TTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS-S-EEEEEECCC
T ss_pred CCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHHHHHHHhccCCCeEEEecCcc
Confidence 3456899999999999999999999999999998776432 34566666655 357889888864
No 474
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.30 E-value=0.0053 Score=68.98 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=24.3
Q ss_pred CCCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 245 KAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 245 ~~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
++++.-+-+.|++|||||||++.|.+.+
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555559999999999999999999877
No 475
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.30 E-value=0.013 Score=57.33 Aligned_cols=63 Identities=24% Similarity=0.391 Sum_probs=40.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc-----CCcE---------E-----EeecC-ccc--------ChHHHHHHHHHccCC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL-----NFDV---------Y-----DLELS-SVE--------GNKDLRQILIATENK 300 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l-----~~~v---------~-----~l~~~-~~~--------~~~~l~~l~~~~~~~ 300 (487)
+.++|.||...|||++.+.+|-.. |..+ + .+... ++. .-..+..++..+..+
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~ 123 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEK 123 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TT
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccc
Confidence 578999999999999999988544 3221 1 11111 111 124566777888899
Q ss_pred eEEEEeccchh
Q 011374 301 SILVVEDIDCC 311 (487)
Q Consensus 301 sIl~IDeiD~~ 311 (487)
++++|||+-.-
T Consensus 124 sLvliDE~g~g 134 (235)
T PF00488_consen 124 SLVLIDELGRG 134 (235)
T ss_dssp EEEEEESTTTT
T ss_pred eeeecccccCC
Confidence 99999999743
No 476
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.29 E-value=0.02 Score=51.61 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=19.1
Q ss_pred ceeeCCCCCcHHHHHHHHHHH
Q 011374 251 YLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~ 271 (487)
+++.|++|+|||+|+.++...
T Consensus 2 i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhh
Confidence 689999999999999999764
No 477
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.29 E-value=0.0092 Score=60.77 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=37.7
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHH---------cCCcEEEeecCcccChHHHHHHHHH
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANY---------LNFDVYDLELSSVEGNKDLRQILIA 296 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~---------l~~~v~~l~~~~~~~~~~l~~l~~~ 296 (487)
|++...-++++||||||||.|+..+|-. .+..++.++...--....+.++...
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~ 153 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER 153 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 5666677899999999999999877632 2346677776554456667666544
No 478
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.29 E-value=0.0035 Score=59.41 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=27.6
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
-+.|+||+|+|||++++.+++.+|+++++.|
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 3789999999999999999998899988654
No 479
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.28 E-value=0.0062 Score=67.36 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.4
Q ss_pred CCCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 245 KAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 245 ~~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.+++.-+.+.||+|+|||||++.+++.+
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3455669999999999999999999877
No 480
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.013 Score=54.20 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=22.6
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.+.-+.|.||.|+|||+|.+.||+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34458899999999999999999876
No 481
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.28 E-value=0.0032 Score=57.81 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.0
Q ss_pred eCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 254 YGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 254 ~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
.|||||||||+++++|+.++..+++-|
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d 27 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGD 27 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCc
Confidence 499999999999999999987666443
No 482
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.28 E-value=0.007 Score=56.38 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=24.1
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFD 275 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~ 275 (487)
.-+.|.||+|+||||++++++..++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 347899999999999999999998874
No 483
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.27 E-value=0.017 Score=63.63 Aligned_cols=86 Identities=22% Similarity=0.345 Sum_probs=54.2
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC---cEEEee------c
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF---DVYDLE------L 281 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~---~v~~l~------~ 281 (487)
.+++++.+.++..+.+.+.+. .....+|+.||+|+||||+..++.++++- +++.++ +
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~--------------~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~ 358 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIH--------------KPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL 358 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHH--------------hcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC
Confidence 478999988877766655442 11234688999999999999988888742 344321 1
Q ss_pred Ccc-----c--ChHHHHHHHHHc--cCCeEEEEeccch
Q 011374 282 SSV-----E--GNKDLRQILIAT--ENKSILVVEDIDC 310 (487)
Q Consensus 282 ~~~-----~--~~~~l~~l~~~~--~~~sIl~IDeiD~ 310 (487)
..+ . ....+...+... ..|-||+|.||-.
T Consensus 359 ~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 359 PGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 111 1 112334444433 4689999999963
No 484
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.27 E-value=0.019 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.1
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
-+++.|+||+|||+|+.++.+.
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4789999999999999987653
No 485
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.25 E-value=0.024 Score=65.81 Aligned_cols=62 Identities=18% Similarity=0.343 Sum_probs=40.7
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc----------cChHHHHHHHHH-------ccCCeEEEEeccc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV----------EGNKDLRQILIA-------TENKSILVVEDID 309 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~----------~~~~~l~~l~~~-------~~~~sIl~IDeiD 309 (487)
-++|.|+||||||++++++...+ |+.++.+-.+.. .....+..++.. .....||||||+-
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 36799999999999998776543 777776654433 012334444422 1245799999997
Q ss_pred hh
Q 011374 310 CC 311 (487)
Q Consensus 310 ~~ 311 (487)
.+
T Consensus 444 Mv 445 (988)
T PRK13889 444 MV 445 (988)
T ss_pred cC
Confidence 55
No 486
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.25 E-value=0.021 Score=50.85 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.0
Q ss_pred ceeeCCCCCcHHHHHHHHHHH
Q 011374 251 YLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~ 271 (487)
+++.|+||+|||+|+.++.+.
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 688999999999999999863
No 487
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.25 E-value=0.0032 Score=57.48 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=28.7
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV 284 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~ 284 (487)
-+.|.|.||+|||+||+++...| +.+++.+|...+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 47889999999999999999887 677887776554
No 488
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.25 E-value=0.011 Score=61.04 Aligned_cols=53 Identities=15% Similarity=0.054 Sum_probs=37.7
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---------CCcEEEeecCcccChHHHHHHHHH
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELSSVEGNKDLRQILIA 296 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---------~~~v~~l~~~~~~~~~~l~~l~~~ 296 (487)
|++.+.-+.|+||||||||.|+..+|-.. +..++.++...--...++.++...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~ 183 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAER 183 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 56666668899999999999999876322 245667776654456777776644
No 489
>PRK13808 adenylate kinase; Provisional
Probab=96.25 E-value=0.0035 Score=64.08 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=25.8
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
++|+||||+|||+++..||..+++..+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 78999999999999999999998866543
No 490
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.24 E-value=0.015 Score=59.42 Aligned_cols=25 Identities=36% Similarity=0.679 Sum_probs=22.9
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
++++++.||+|+|||+++++++.++
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999999874
No 491
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.24 E-value=0.034 Score=60.52 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=23.2
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHH
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~ 270 (487)
|.+.+.-+||+|+||+|||+|+..++.
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~ 53 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLV 53 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 567777899999999999999997664
No 492
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.24 E-value=0.01 Score=59.31 Aligned_cols=62 Identities=26% Similarity=0.268 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhcH-HHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc
Q 011374 222 MKKMIMDDLERFLKRK-EFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV 284 (487)
Q Consensus 222 ~K~~i~~~l~~fl~~~-~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~ 284 (487)
+.+.+.+.+...+..- ..+. .....++-++|.||||+||||++..+|..+ +..+.-+++...
T Consensus 46 ~~~~~~e~l~~~~~~~~~~~~-~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 46 LKEILKEYLKEILKETDLELI-VEENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred HHHHHHHHHHHHHcccchhhc-ccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 3444555555444331 1111 112335678888999999999999999877 555655555443
No 493
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.24 E-value=0.042 Score=65.36 Aligned_cols=127 Identities=16% Similarity=0.210 Sum_probs=81.6
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHH---------------HH-HHHHccCCeEEEEeccchhhh
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDL---------------RQ-ILIATENKSILVVEDIDCCLE 313 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l---------------~~-l~~~~~~~sIl~IDeiD~~~~ 313 (487)
.+|+.||..+|||+++..+|...|-.++.++-..-.+-.+. .. +.....+.--|++||.....
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLAp- 968 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAP- 968 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCc-
Confidence 38999999999999999999999999999876543111110 11 12233456688999997542
Q ss_pred hhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhc---ccc-------CCCCceEEEEecCCCC------CCCccccC
Q 011374 314 MQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDG---LWS-------SCGDERIIIFTTNHKD------RLDPALLR 377 (487)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg---l~s-------~~~~~~iiI~TTN~~~------~LD~ALlR 377 (487)
..++..|-..+|. +.- .+-.+..+++|-|.|. .|..|++.
T Consensus 969 ------------------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN 1024 (4600)
T COG5271 969 ------------------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN 1024 (4600)
T ss_pred ------------------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh
Confidence 1223333333332 110 1112345566777664 46788877
Q ss_pred CCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 378 PGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 378 pGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
|| ..+||..-..+++..|++.-+.
T Consensus 1025 --RF-lE~hFddipedEle~ILh~rc~ 1048 (4600)
T COG5271 1025 --RF-LEMHFDDIPEDELEEILHGRCE 1048 (4600)
T ss_pred --hh-HhhhcccCcHHHHHHHHhccCc
Confidence 88 5688888888999988876554
No 494
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.23 E-value=0.022 Score=64.77 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=40.9
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCccc----------ChHHHHHHHHH-------ccCCeEEEEecc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE----------GNKDLRQILIA-------TENKSILVVEDI 308 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~----------~~~~l~~l~~~-------~~~~sIl~IDei 308 (487)
+-++|.|+||||||++++++...+ ++.+..+-.+... ....+..++.. .....+|+|||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 457899999999999999987654 6667665444320 01223333221 124589999999
Q ss_pred chh
Q 011374 309 DCC 311 (487)
Q Consensus 309 D~~ 311 (487)
-.+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 755
No 495
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.22 E-value=0.0037 Score=58.63 Aligned_cols=26 Identities=27% Similarity=0.682 Sum_probs=23.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+..+++.||+|+||||+++++++.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 56799999999999999999998874
No 496
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.21 E-value=0.01 Score=63.08 Aligned_cols=29 Identities=34% Similarity=0.378 Sum_probs=26.5
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFD 275 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~ 275 (487)
.|.-++++|+||||||+++..+|..++..
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 46778999999999999999999999985
No 497
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.21 E-value=0.013 Score=62.70 Aligned_cols=69 Identities=26% Similarity=0.297 Sum_probs=44.1
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCccc--------------------ChHHHHHHHHH--cc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE--------------------GNKDLRQILIA--TE 298 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~--------------------~~~~l~~l~~~--~~ 298 (487)
|++.+.-+||+|+||+|||+|+..+|..+ +.+++.++..+-. ....+..+... ..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 56666678999999999999999887765 3455555443210 01112222222 23
Q ss_pred CCeEEEEeccchhh
Q 011374 299 NKSILVVEDIDCCL 312 (487)
Q Consensus 299 ~~sIl~IDeiD~~~ 312 (487)
.+.+++||.|..+.
T Consensus 170 ~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 170 NPQACVIDSIQTLY 183 (454)
T ss_pred CCcEEEEecchhhc
Confidence 57899999998764
No 498
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.21 E-value=0.008 Score=64.96 Aligned_cols=51 Identities=20% Similarity=0.209 Sum_probs=37.3
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHH----cCCcEEEeecCcccChHHHHHHHHH
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANY----LNFDVYDLELSSVEGNKDLRQILIA 296 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~----l~~~v~~l~~~~~~~~~~l~~l~~~ 296 (487)
|.+.++.+|+.||||||||+|+..++.. .+.+.+.+.+. ++...+.+-...
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e--E~~~~l~~~~~~ 71 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE--ESPQDIIKNARS 71 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe--cCHHHHHHHHHH
Confidence 6778888999999999999999977432 25677777764 445555554433
No 499
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.19 E-value=0.0037 Score=59.20 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=29.2
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHc-CCcEEEeecCcc
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELSSV 284 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l-~~~v~~l~~~~~ 284 (487)
..|.-+++.|+||+|||+++..+...+ +-+++.++...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~ 52 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF 52 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH
Confidence 456778999999999999999999988 667777776665
No 500
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.18 E-value=0.0079 Score=61.41 Aligned_cols=35 Identities=23% Similarity=0.147 Sum_probs=27.2
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~ 281 (487)
.+.-++|.||+|+||||++..+|..+ +..+..+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34568899999999999999999987 444554444
Done!