Query 011374
Match_columns 487
No_of_seqs 411 out of 3174
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 06:49:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 6.1E-41 2.1E-45 345.8 20.3 212 209-433 143-363 (405)
2 4b4t_I 26S protease regulatory 100.0 1.7E-40 5.9E-45 343.5 20.4 214 207-433 175-397 (437)
3 4b4t_M 26S protease regulatory 100.0 7.4E-40 2.5E-44 342.1 21.6 214 207-433 174-396 (434)
4 4b4t_L 26S protease subunit RP 100.0 5.6E-40 1.9E-44 343.3 20.4 213 208-433 175-396 (437)
5 4b4t_K 26S protease regulatory 100.0 1.7E-39 5.9E-44 339.0 21.4 213 208-433 166-388 (428)
6 4b4t_H 26S protease regulatory 100.0 9.1E-39 3.1E-43 333.5 21.2 213 208-433 203-424 (467)
7 3cf2_A TER ATPase, transitiona 100.0 4.6E-35 1.6E-39 325.7 8.9 224 209-450 472-704 (806)
8 3cf2_A TER ATPase, transitiona 100.0 4.5E-33 1.5E-37 309.7 18.3 220 210-450 200-428 (806)
9 3cf0_A Transitional endoplasmi 100.0 4.4E-29 1.5E-33 250.1 24.6 212 209-433 10-230 (301)
10 2x8a_A Nuclear valosin-contain 100.0 3.2E-29 1.1E-33 248.2 20.0 209 209-433 5-227 (274)
11 3h4m_A Proteasome-activating n 100.0 1.2E-27 4.3E-32 236.4 20.7 214 207-433 10-232 (285)
12 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.6E-27 5.6E-32 241.1 21.8 207 209-433 7-224 (322)
13 2ce7_A Cell division protein F 100.0 1.6E-27 5.4E-32 252.4 20.7 211 209-433 11-230 (476)
14 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.4E-27 1.2E-31 229.8 20.5 211 210-433 2-223 (262)
15 3eie_A Vacuolar protein sortin 100.0 2.4E-27 8.4E-32 239.6 19.5 209 207-433 11-229 (322)
16 1lv7_A FTSH; alpha/beta domain 99.9 8.2E-27 2.8E-31 227.6 20.3 213 207-433 5-226 (257)
17 2qp9_X Vacuolar protein sortin 99.9 1.2E-26 4E-31 238.0 19.3 208 208-433 45-262 (355)
18 3hu3_A Transitional endoplasmi 99.9 3.4E-26 1.1E-30 243.7 19.0 209 209-433 199-416 (489)
19 2zan_A Vacuolar protein sortin 99.9 6.7E-26 2.3E-30 239.1 18.0 208 208-433 128-346 (444)
20 2r62_A Cell division protease 99.9 8.6E-27 3E-31 228.5 10.1 212 209-432 6-226 (268)
21 1ixz_A ATP-dependent metallopr 99.9 6.5E-25 2.2E-29 213.7 20.5 218 202-433 3-230 (254)
22 3vfd_A Spastin; ATPase, microt 99.9 4.4E-25 1.5E-29 228.7 20.4 210 207-433 108-327 (389)
23 2dhr_A FTSH; AAA+ protein, hex 99.9 2.2E-25 7.5E-30 237.3 16.4 211 209-433 26-245 (499)
24 3d8b_A Fidgetin-like protein 1 99.9 5.5E-25 1.9E-29 225.6 17.8 208 209-433 79-296 (357)
25 3b9p_A CG5977-PA, isoform A; A 99.9 1.9E-24 6.3E-29 215.0 18.6 209 208-433 15-234 (297)
26 3t15_A Ribulose bisphosphate c 99.9 8.4E-25 2.9E-29 218.3 13.5 164 242-420 30-214 (293)
27 1iy2_A ATP-dependent metallopr 99.9 1.5E-23 5E-28 207.3 20.0 212 208-433 34-254 (278)
28 1ypw_A Transitional endoplasmi 99.9 8.5E-27 2.9E-31 262.2 -5.4 212 209-433 472-692 (806)
29 1ypw_A Transitional endoplasmi 99.9 2.6E-22 8.9E-27 225.8 16.2 207 210-432 200-415 (806)
30 3pfi_A Holliday junction ATP-d 99.8 5.3E-19 1.8E-23 178.8 21.3 196 200-432 17-227 (338)
31 2c9o_A RUVB-like 1; hexameric 99.8 2E-20 6.9E-25 197.8 6.3 174 210-392 33-226 (456)
32 1hqc_A RUVB; extended AAA-ATPa 99.8 3.2E-18 1.1E-22 171.5 20.7 191 208-433 6-212 (324)
33 3syl_A Protein CBBX; photosynt 99.8 6.5E-19 2.2E-23 175.6 15.1 180 213-416 29-230 (309)
34 1g41_A Heat shock protein HSLU 99.8 9.1E-20 3.1E-24 190.8 4.6 162 215-399 16-188 (444)
35 2chg_A Replication factor C sm 99.7 6.6E-17 2.2E-21 151.2 19.7 158 207-409 10-180 (226)
36 1ofh_A ATP-dependent HSL prote 99.7 2.3E-17 7.9E-22 163.8 17.4 218 215-451 16-272 (310)
37 3u61_B DNA polymerase accessor 99.7 3E-17 1E-21 165.0 17.8 196 200-449 14-220 (324)
38 1d2n_A N-ethylmaleimide-sensit 99.7 8E-17 2.7E-21 158.1 16.7 167 214-401 33-210 (272)
39 3uk6_A RUVB-like 2; hexameric 99.7 2.7E-16 9.4E-21 160.4 20.9 165 209-413 38-282 (368)
40 1njg_A DNA polymerase III subu 99.7 4.4E-16 1.5E-20 147.2 19.6 160 207-410 16-205 (250)
41 1sxj_A Activator 1 95 kDa subu 99.7 1.6E-16 5.5E-21 170.4 17.5 200 199-430 26-250 (516)
42 3hws_A ATP-dependent CLP prote 99.7 9.4E-18 3.2E-22 171.9 7.3 175 216-403 17-269 (363)
43 1jbk_A CLPB protein; beta barr 99.7 5.8E-17 2E-21 148.0 9.5 152 209-399 17-194 (195)
44 3pvs_A Replication-associated 99.7 6E-16 2E-20 163.0 16.6 151 207-405 19-180 (447)
45 2chq_A Replication factor C sm 99.7 3.9E-16 1.3E-20 155.3 13.9 159 207-410 10-181 (319)
46 2r44_A Uncharacterized protein 99.7 1.5E-15 5E-20 153.2 18.0 154 210-405 23-200 (331)
47 3m6a_A ATP-dependent protease 99.6 2.6E-16 8.9E-21 169.7 10.8 160 213-403 80-266 (543)
48 1um8_A ATP-dependent CLP prote 99.6 1.1E-15 3.9E-20 157.0 15.0 175 215-402 22-285 (376)
49 1sxj_D Activator 1 41 kDa subu 99.6 1.5E-15 5E-20 153.6 15.5 164 200-410 25-212 (353)
50 1sxj_B Activator 1 37 kDa subu 99.6 2.8E-15 9.4E-20 149.4 17.3 162 201-409 10-185 (323)
51 1iqp_A RFCS; clamp loader, ext 99.6 2.1E-15 7E-20 150.6 16.2 163 201-410 14-189 (327)
52 1jr3_A DNA polymerase III subu 99.6 4.9E-15 1.7E-19 150.9 19.3 180 207-430 9-219 (373)
53 3bos_A Putative DNA replicatio 99.6 1.1E-15 3.8E-20 145.4 12.7 165 207-410 21-194 (242)
54 4fcw_A Chaperone protein CLPB; 99.6 2.1E-15 7.2E-20 150.1 14.8 160 214-404 17-230 (311)
55 2v1u_A Cell division control p 99.6 3.9E-15 1.3E-19 151.8 17.0 160 212-404 17-215 (387)
56 1l8q_A Chromosomal replication 99.6 3E-15 1E-19 150.5 15.0 187 207-431 4-207 (324)
57 1in4_A RUVB, holliday junction 99.6 5E-14 1.7E-18 142.7 24.1 191 207-432 18-223 (334)
58 3pxg_A Negative regulator of g 99.6 6.2E-15 2.1E-19 156.2 17.8 147 208-405 174-340 (468)
59 3te6_A Regulatory protein SIR3 99.6 6.7E-15 2.3E-19 148.0 16.1 180 246-455 43-289 (318)
60 1g8p_A Magnesium-chelatase 38 99.6 2.5E-14 8.6E-19 144.5 20.1 154 208-403 18-232 (350)
61 1qvr_A CLPB protein; coiled co 99.6 1.1E-14 3.9E-19 164.9 19.4 157 209-404 165-346 (854)
62 2p65_A Hypothetical protein PF 99.6 1.1E-15 3.6E-20 139.5 8.4 145 209-391 17-187 (187)
63 2qby_B CDC6 homolog 3, cell di 99.6 4.4E-14 1.5E-18 144.4 21.1 151 214-404 20-211 (384)
64 2qby_A CDC6 homolog 1, cell di 99.6 4.1E-14 1.4E-18 143.9 18.9 159 211-404 17-211 (386)
65 3pxi_A Negative regulator of g 99.6 1.1E-14 3.7E-19 163.1 15.1 155 214-404 491-676 (758)
66 1r6b_X CLPA protein; AAA+, N-t 99.6 1.5E-14 5E-19 161.9 15.2 154 215-404 459-667 (758)
67 1sxj_E Activator 1 40 kDa subu 99.6 2.4E-14 8E-19 145.2 15.4 182 207-432 7-237 (354)
68 1r6b_X CLPA protein; AAA+, N-t 99.6 4.9E-14 1.7E-18 157.7 18.4 158 209-404 181-363 (758)
69 2z4s_A Chromosomal replication 99.6 3.2E-14 1.1E-18 149.6 15.2 187 207-432 98-306 (440)
70 1sxj_C Activator 1 40 kDa subu 99.6 1.2E-13 4.1E-18 139.9 18.9 161 200-407 13-186 (340)
71 1fnn_A CDC6P, cell division co 99.5 2.5E-13 8.5E-18 138.7 21.1 159 212-404 15-207 (389)
72 3pxi_A Negative regulator of g 99.5 1E-13 3.5E-18 155.2 19.8 147 208-405 174-340 (758)
73 2bjv_A PSP operon transcriptio 99.5 6.9E-14 2.4E-18 136.5 12.8 155 211-404 3-195 (265)
74 1a5t_A Delta prime, HOLB; zinc 99.5 1.4E-12 4.9E-17 131.9 19.5 126 246-403 22-180 (334)
75 3n70_A Transport activator; si 99.4 1.9E-13 6.4E-18 121.6 8.5 131 215-389 2-143 (145)
76 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 2.3E-12 8E-17 137.1 15.3 146 215-404 23-197 (500)
77 1qvr_A CLPB protein; coiled co 99.4 1.4E-12 4.7E-17 147.9 13.3 156 213-404 557-771 (854)
78 2gno_A DNA polymerase III, gam 99.4 4.2E-12 1.4E-16 127.1 13.8 123 248-404 18-153 (305)
79 1ojl_A Transcriptional regulat 99.4 3.4E-12 1.2E-16 127.7 12.3 152 215-404 3-191 (304)
80 3co5_A Putative two-component 99.3 7.5E-13 2.6E-17 117.5 6.0 131 215-389 5-141 (143)
81 3f9v_A Minichromosome maintena 99.3 2.2E-13 7.4E-18 148.4 2.3 129 250-406 329-493 (595)
82 3ec2_A DNA replication protein 99.3 1.9E-12 6.5E-17 118.8 7.3 95 209-311 5-112 (180)
83 4akg_A Glutathione S-transfera 99.3 1.9E-11 6.5E-16 150.5 15.8 135 248-404 1267-1432(2695)
84 1w5s_A Origin recognition comp 99.3 5.4E-11 1.8E-15 122.4 15.2 192 212-432 20-266 (412)
85 2w58_A DNAI, primosome compone 99.2 6.9E-11 2.4E-15 110.1 9.4 97 209-311 20-127 (202)
86 1svm_A Large T antigen; AAA+ f 99.1 2.9E-11 9.9E-16 124.3 6.4 121 243-389 164-284 (377)
87 1tue_A Replication protein E1; 99.1 2.7E-10 9.1E-15 106.9 8.7 115 244-391 54-180 (212)
88 2qgz_A Helicase loader, putati 99.0 2.4E-10 8.1E-15 114.5 7.1 96 210-311 120-226 (308)
89 3k1j_A LON protease, ATP-depen 99.0 1.6E-09 5.3E-14 118.3 13.6 53 207-274 34-86 (604)
90 2fna_A Conserved hypothetical 99.0 1.4E-08 5E-13 101.6 17.3 177 210-432 9-250 (357)
91 3cmw_A Protein RECA, recombina 98.9 1.4E-09 4.8E-14 129.1 9.3 147 211-368 1017-1218(1706)
92 2qen_A Walker-type ATPase; unk 98.9 9.6E-08 3.3E-12 95.4 20.4 182 209-432 7-246 (350)
93 2vhj_A Ntpase P4, P4; non- hyd 98.9 1.8E-09 6.3E-14 108.0 6.0 116 244-375 119-242 (331)
94 2kjq_A DNAA-related protein; s 98.8 5.3E-09 1.8E-13 93.4 7.0 58 247-311 35-95 (149)
95 1u0j_A DNA replication protein 98.8 2.2E-08 7.7E-13 97.7 11.2 59 246-311 102-160 (267)
96 2r2a_A Uncharacterized protein 98.8 8.7E-09 3E-13 96.6 7.9 120 249-393 6-156 (199)
97 3vkg_A Dynein heavy chain, cyt 98.8 4.2E-08 1.4E-12 122.0 15.1 135 248-404 1304-1470(3245)
98 4akg_A Glutathione S-transfera 98.7 4.5E-08 1.5E-12 121.0 13.3 126 248-401 645-791 (2695)
99 1ny5_A Transcriptional regulat 98.6 7.8E-07 2.7E-11 91.6 15.3 154 213-404 136-326 (387)
100 3dzd_A Transcriptional regulat 98.6 1.4E-06 4.9E-11 89.0 16.8 152 215-404 130-317 (368)
101 3f8t_A Predicted ATPase involv 98.5 9.2E-08 3.2E-12 100.0 5.4 141 216-394 215-385 (506)
102 3vkg_A Dynein heavy chain, cyt 98.4 1.5E-06 5E-11 108.4 13.4 129 248-404 604-754 (3245)
103 3cmu_A Protein RECA, recombina 98.2 1.6E-06 5.5E-11 104.4 9.3 111 245-368 1424-1563(2050)
104 1ye8_A Protein THEP1, hypothet 98.2 4.3E-06 1.5E-10 76.6 8.8 27 251-277 3-29 (178)
105 1jr3_D DNA polymerase III, del 98.1 1.6E-05 5.6E-10 79.8 12.6 124 247-407 17-159 (343)
106 1z6t_A APAF-1, apoptotic prote 98.0 0.00015 5.1E-09 78.1 17.6 168 210-430 120-326 (591)
107 2cvh_A DNA repair and recombin 97.8 8.2E-05 2.8E-09 69.1 10.0 40 244-283 16-55 (220)
108 3sfz_A APAF-1, apoptotic pepti 97.8 0.00058 2E-08 79.3 18.9 167 209-428 119-324 (1249)
109 3trf_A Shikimate kinase, SK; a 97.7 1.9E-05 6.6E-10 71.7 3.5 33 248-280 5-37 (185)
110 2w0m_A SSO2452; RECA, SSPF, un 97.7 0.00021 7.2E-09 66.6 10.6 29 244-272 19-47 (235)
111 1n0w_A DNA repair protein RAD5 97.6 0.0002 6.7E-09 67.6 9.8 40 244-283 20-68 (243)
112 3vaa_A Shikimate kinase, SK; s 97.6 2.9E-05 9.9E-10 71.8 3.7 34 247-280 24-57 (199)
113 1qhx_A CPT, protein (chloramph 97.6 4.2E-05 1.4E-09 68.9 4.6 34 249-282 4-37 (178)
114 3kb2_A SPBC2 prophage-derived 97.6 5.1E-05 1.8E-09 67.6 4.9 32 250-281 3-34 (173)
115 3upu_A ATP-dependent DNA helic 97.6 0.00017 5.9E-09 75.6 9.7 68 200-282 12-83 (459)
116 2rhm_A Putative kinase; P-loop 97.5 3.5E-05 1.2E-09 70.2 3.3 34 246-279 3-36 (193)
117 3hr8_A Protein RECA; alpha and 97.5 0.00014 4.8E-09 73.9 7.4 70 244-313 57-153 (356)
118 2z43_A DNA repair and recombin 97.5 0.00016 5.4E-09 72.4 7.6 40 244-283 103-151 (324)
119 2iyv_A Shikimate kinase, SK; t 97.5 5.6E-05 1.9E-09 68.6 3.6 32 249-280 3-34 (184)
120 3iij_A Coilin-interacting nucl 97.5 5.3E-05 1.8E-09 68.6 3.4 32 248-279 11-42 (180)
121 1via_A Shikimate kinase; struc 97.5 5.1E-05 1.7E-09 68.5 3.2 30 250-279 6-35 (175)
122 1kag_A SKI, shikimate kinase I 97.4 6.3E-05 2.1E-09 67.4 3.6 30 249-278 5-34 (173)
123 1zuh_A Shikimate kinase; alpha 97.4 6.1E-05 2.1E-09 67.3 3.4 32 249-280 8-39 (168)
124 2zr9_A Protein RECA, recombina 97.4 0.00018 6.1E-09 72.9 7.2 69 244-312 57-152 (349)
125 2ehv_A Hypothetical protein PH 97.4 0.00067 2.3E-08 64.1 10.8 26 244-269 26-51 (251)
126 1v5w_A DMC1, meiotic recombina 97.4 0.00038 1.3E-08 70.2 9.5 40 244-283 118-166 (343)
127 1y63_A LMAJ004144AAA protein; 97.4 6.8E-05 2.3E-09 68.5 3.3 33 248-280 10-43 (184)
128 1nlf_A Regulatory protein REPA 97.4 0.00032 1.1E-08 68.3 8.4 29 244-272 26-54 (279)
129 1u94_A RECA protein, recombina 97.4 0.00018 6.2E-09 73.1 6.6 70 244-313 59-155 (356)
130 1pzn_A RAD51, DNA repair and r 97.4 0.00032 1.1E-08 71.1 8.2 29 244-272 127-155 (349)
131 2a5y_B CED-4; apoptosis; HET: 97.4 0.0052 1.8E-07 65.7 18.0 163 217-430 131-335 (549)
132 2orw_A Thymidine kinase; TMTK, 97.4 8.3E-05 2.8E-09 68.3 3.3 30 249-278 4-36 (184)
133 1xp8_A RECA protein, recombina 97.4 0.00055 1.9E-08 69.8 9.7 69 244-312 70-165 (366)
134 1e6c_A Shikimate kinase; phosp 97.3 8.4E-05 2.9E-09 66.5 3.1 32 249-280 3-34 (173)
135 2cdn_A Adenylate kinase; phosp 97.3 0.00011 3.8E-09 67.7 4.0 32 249-280 21-52 (201)
136 2ze6_A Isopentenyl transferase 97.3 0.00011 3.9E-09 70.8 4.0 32 250-281 3-34 (253)
137 1tev_A UMP-CMP kinase; ploop, 97.3 9.7E-05 3.3E-09 67.1 3.1 31 249-279 4-34 (196)
138 3lw7_A Adenylate kinase relate 97.3 0.00011 3.6E-09 65.3 3.2 29 250-279 3-31 (179)
139 1qf9_A UMP/CMP kinase, protein 97.3 9.7E-05 3.3E-09 67.0 2.9 33 247-279 5-37 (194)
140 3t61_A Gluconokinase; PSI-biol 97.3 0.00015 5E-09 67.0 4.0 33 248-280 18-50 (202)
141 2pt5_A Shikimate kinase, SK; a 97.3 0.00013 4.3E-09 65.0 3.4 30 251-280 3-32 (168)
142 3cmu_A Protein RECA, recombina 97.3 0.00033 1.1E-08 84.6 7.7 70 244-313 1077-1173(2050)
143 3be4_A Adenylate kinase; malar 97.3 0.00011 3.6E-09 69.0 2.8 31 249-279 6-36 (217)
144 2c95_A Adenylate kinase 1; tra 97.3 0.00012 4.1E-09 66.8 3.0 33 248-280 9-41 (196)
145 3cm0_A Adenylate kinase; ATP-b 97.2 0.00011 3.7E-09 66.6 2.6 31 249-279 5-35 (186)
146 1kht_A Adenylate kinase; phosp 97.2 0.00012 4.1E-09 66.3 2.7 30 249-278 4-38 (192)
147 2bwj_A Adenylate kinase 5; pho 97.2 0.00013 4.3E-09 66.8 2.8 33 248-280 12-44 (199)
148 3e1s_A Exodeoxyribonuclease V, 97.2 0.00047 1.6E-08 74.5 7.7 34 249-282 205-241 (574)
149 3dl0_A Adenylate kinase; phosp 97.2 0.00016 5.3E-09 67.5 3.5 29 251-279 3-31 (216)
150 1ly1_A Polynucleotide kinase; 97.2 8.9E-05 3E-09 66.5 1.7 29 249-277 3-32 (181)
151 1aky_A Adenylate kinase; ATP:A 97.2 0.00016 5.5E-09 67.7 3.4 31 249-279 5-35 (220)
152 2c9o_A RUVB-like 1; hexameric 97.2 0.0018 6.1E-08 67.8 11.8 122 300-466 296-431 (456)
153 1gvn_B Zeta; postsegregational 97.2 0.00038 1.3E-08 68.5 6.2 35 247-281 32-66 (287)
154 1zd8_A GTP:AMP phosphotransfer 97.2 0.00014 4.8E-09 68.5 2.9 32 248-279 7-38 (227)
155 3fb4_A Adenylate kinase; psych 97.2 0.00017 5.8E-09 67.1 3.4 29 251-279 3-31 (216)
156 2zts_A Putative uncharacterize 97.2 0.0016 5.6E-08 61.2 10.0 38 244-281 26-67 (251)
157 1zp6_A Hypothetical protein AT 97.2 0.00015 5.2E-09 65.9 2.6 37 245-281 6-42 (191)
158 1knq_A Gluconate kinase; ALFA/ 97.1 0.00023 7.8E-09 63.9 3.7 31 249-279 9-39 (175)
159 1ukz_A Uridylate kinase; trans 97.1 0.00022 7.5E-09 65.7 3.4 32 249-280 16-47 (203)
160 3lda_A DNA repair protein RAD5 97.1 0.00086 2.9E-08 69.1 8.2 28 244-271 174-201 (400)
161 1ak2_A Adenylate kinase isoenz 97.1 0.00023 7.8E-09 67.4 3.6 31 249-279 17-47 (233)
162 2pez_A Bifunctional 3'-phospho 97.1 0.00033 1.1E-08 63.2 4.4 33 248-280 5-40 (179)
163 3io5_A Recombination and repai 97.1 0.0011 3.7E-08 66.1 8.4 68 245-313 26-125 (333)
164 2vli_A Antibiotic resistance p 97.1 0.0002 6.8E-09 64.6 2.8 29 249-277 6-34 (183)
165 2p5t_B PEZT; postsegregational 97.1 0.00037 1.3E-08 67.0 4.8 38 247-284 31-68 (253)
166 2i1q_A DNA repair and recombin 97.1 0.0008 2.7E-08 66.9 7.4 28 244-271 94-121 (322)
167 1zak_A Adenylate kinase; ATP:A 97.1 0.00016 5.4E-09 67.8 2.0 31 248-278 5-35 (222)
168 4eun_A Thermoresistant glucoki 97.0 0.00036 1.2E-08 64.4 4.0 31 248-278 29-59 (200)
169 2pbr_A DTMP kinase, thymidylat 97.0 0.00041 1.4E-08 62.9 4.3 30 251-280 3-35 (195)
170 2i3b_A HCR-ntpase, human cance 97.0 0.0012 4.1E-08 60.9 7.4 23 250-272 3-25 (189)
171 3tlx_A Adenylate kinase 2; str 97.0 0.00031 1E-08 67.2 3.4 33 247-279 28-60 (243)
172 1e4v_A Adenylate kinase; trans 97.0 0.00026 9E-09 66.0 2.8 29 251-279 3-31 (214)
173 2ga8_A Hypothetical 39.9 kDa p 97.0 0.0002 6.8E-09 72.5 2.0 50 220-278 5-54 (359)
174 2bbw_A Adenylate kinase 4, AK4 97.0 0.0004 1.4E-08 66.3 3.9 31 248-278 27-57 (246)
175 1vt4_I APAF-1 related killer D 97.0 0.0044 1.5E-07 70.7 12.8 55 217-283 131-191 (1221)
176 3umf_A Adenylate kinase; rossm 97.0 0.00043 1.5E-08 65.4 3.9 31 247-277 28-58 (217)
177 2xb4_A Adenylate kinase; ATP-b 96.9 0.00037 1.3E-08 65.6 3.2 29 251-279 3-31 (223)
178 3crm_A TRNA delta(2)-isopenten 96.9 0.00043 1.5E-08 69.2 3.8 34 248-281 5-38 (323)
179 1g5t_A COB(I)alamin adenosyltr 96.9 0.0033 1.1E-07 58.2 9.2 109 249-388 29-178 (196)
180 2if2_A Dephospho-COA kinase; a 96.9 0.00036 1.2E-08 64.3 2.6 30 250-280 3-32 (204)
181 1cke_A CK, MSSA, protein (cyti 96.9 0.00055 1.9E-08 63.9 3.8 31 249-279 6-36 (227)
182 3sr0_A Adenylate kinase; phosp 96.9 0.00056 1.9E-08 64.0 3.7 28 251-278 3-30 (206)
183 4gp7_A Metallophosphoesterase; 96.9 0.0013 4.5E-08 59.2 6.1 20 248-267 9-28 (171)
184 3jvv_A Twitching mobility prot 96.9 0.0026 9E-08 64.5 9.0 61 249-309 124-206 (356)
185 2v54_A DTMP kinase, thymidylat 96.9 0.00056 1.9E-08 62.7 3.7 33 249-281 5-38 (204)
186 3nwj_A ATSK2; P loop, shikimat 96.9 0.0005 1.7E-08 66.4 3.4 33 248-280 48-80 (250)
187 2z0h_A DTMP kinase, thymidylat 96.8 0.00071 2.4E-08 61.6 4.2 30 251-280 3-35 (197)
188 2plr_A DTMP kinase, probable t 96.8 0.0011 3.9E-08 60.8 5.7 30 249-278 5-36 (213)
189 3ake_A Cytidylate kinase; CMP 96.8 0.00053 1.8E-08 63.0 3.4 31 250-280 4-34 (208)
190 1nks_A Adenylate kinase; therm 96.8 0.0003 1E-08 63.7 1.6 24 250-273 3-26 (194)
191 2jaq_A Deoxyguanosine kinase; 96.8 0.00058 2E-08 62.4 3.5 28 251-278 3-30 (205)
192 1jjv_A Dephospho-COA kinase; P 96.8 0.00047 1.6E-08 63.6 2.8 30 250-280 4-33 (206)
193 2grj_A Dephospho-COA kinase; T 96.8 0.00058 2E-08 63.2 3.1 31 250-280 14-44 (192)
194 3r20_A Cytidylate kinase; stru 96.7 0.00083 2.8E-08 64.1 3.9 31 249-279 10-40 (233)
195 3uie_A Adenylyl-sulfate kinase 96.7 0.0012 4.2E-08 60.7 4.8 26 247-272 24-49 (200)
196 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0011 3.7E-08 64.0 4.4 32 249-280 5-39 (260)
197 4a74_A DNA repair and recombin 96.7 0.0019 6.5E-08 60.1 5.7 29 244-272 21-49 (231)
198 2r8r_A Sensor protein; KDPD, P 96.6 0.0013 4.6E-08 62.3 4.5 33 249-281 7-42 (228)
199 1uf9_A TT1252 protein; P-loop, 96.6 0.0008 2.7E-08 61.5 2.8 31 249-280 9-39 (203)
200 2h92_A Cytidylate kinase; ross 96.6 0.001 3.5E-08 61.9 3.6 32 249-280 4-35 (219)
201 2b8t_A Thymidine kinase; deoxy 96.6 0.004 1.4E-07 58.9 7.5 62 250-311 14-101 (223)
202 1kao_A RAP2A; GTP-binding prot 96.6 0.0058 2E-07 53.0 8.1 22 250-271 5-26 (167)
203 2wwf_A Thymidilate kinase, put 96.6 0.00045 1.5E-08 63.8 0.8 29 249-277 11-39 (212)
204 1vht_A Dephospho-COA kinase; s 96.5 0.0011 3.8E-08 61.7 3.1 31 249-280 5-35 (218)
205 2qor_A Guanylate kinase; phosp 96.5 0.0014 4.8E-08 60.5 3.5 28 246-273 10-37 (204)
206 1q3t_A Cytidylate kinase; nucl 96.5 0.0014 4.7E-08 62.1 3.5 31 249-279 17-47 (236)
207 4e22_A Cytidylate kinase; P-lo 96.5 0.0018 6.1E-08 62.2 4.3 30 249-278 28-57 (252)
208 3cmw_A Protein RECA, recombina 96.5 0.0024 8.1E-08 76.4 6.0 70 244-313 30-126 (1706)
209 4b3f_X DNA-binding protein smu 96.4 0.0045 1.5E-07 67.7 7.8 66 212-296 184-252 (646)
210 3zvl_A Bifunctional polynucleo 96.4 0.0024 8.3E-08 66.0 5.3 59 248-308 258-317 (416)
211 1ltq_A Polynucleotide kinase; 96.4 0.001 3.5E-08 65.2 2.1 31 249-279 3-34 (301)
212 2qt1_A Nicotinamide riboside k 96.4 0.001 3.5E-08 61.5 2.0 32 249-280 22-54 (207)
213 1uj2_A Uridine-cytidine kinase 96.4 0.0016 5.3E-08 62.4 3.4 29 248-276 22-50 (252)
214 1sky_E F1-ATPase, F1-ATP synth 96.4 0.021 7.3E-07 59.7 12.1 23 250-272 153-175 (473)
215 1kgd_A CASK, peripheral plasma 96.4 0.0018 6E-08 58.7 3.4 26 248-273 5-30 (180)
216 1z0j_A RAB-22, RAS-related pro 96.4 0.0046 1.6E-07 54.0 6.1 23 250-272 8-30 (170)
217 1nn5_A Similar to deoxythymidy 96.4 0.0008 2.7E-08 62.1 1.0 26 248-273 9-34 (215)
218 1rz3_A Hypothetical protein rb 96.4 0.0047 1.6E-07 56.9 6.3 36 248-283 22-60 (201)
219 1qde_A EIF4A, translation init 96.3 0.025 8.5E-07 52.3 11.3 51 211-264 14-67 (224)
220 2bdt_A BH3686; alpha-beta prot 96.3 0.002 6.7E-08 58.5 3.5 25 250-274 4-28 (189)
221 2yvu_A Probable adenylyl-sulfa 96.3 0.0029 1E-07 57.3 4.7 26 248-273 13-38 (186)
222 2ius_A DNA translocase FTSK; n 96.3 0.028 9.7E-07 59.5 12.8 41 358-400 332-374 (512)
223 1nrj_B SR-beta, signal recogni 96.3 0.0099 3.4E-07 54.7 8.2 25 248-272 12-36 (218)
224 2iut_A DNA translocase FTSK; n 96.3 0.018 6.3E-07 61.6 11.1 41 357-399 377-419 (574)
225 3a8t_A Adenylate isopentenyltr 96.3 0.0018 6.2E-08 65.1 3.0 36 249-284 41-76 (339)
226 1ek0_A Protein (GTP-binding pr 96.3 0.0055 1.9E-07 53.4 5.9 23 250-272 5-27 (170)
227 2dr3_A UPF0273 protein PH0284; 96.2 0.0027 9.1E-08 59.7 4.0 38 244-281 19-59 (247)
228 3foz_A TRNA delta(2)-isopenten 96.2 0.0025 8.5E-08 63.3 3.9 35 248-282 10-44 (316)
229 2gxq_A Heat resistant RNA depe 96.2 0.018 6E-07 52.5 9.5 25 248-272 38-63 (207)
230 2ce2_X GTPase HRAS; signaling 96.2 0.0085 2.9E-07 51.8 7.0 23 250-272 5-27 (166)
231 2j41_A Guanylate kinase; GMP, 96.2 0.0019 6.5E-08 59.2 2.8 26 247-272 5-30 (207)
232 1m7g_A Adenylylsulfate kinase; 96.2 0.0029 1E-07 58.7 4.1 34 247-280 24-61 (211)
233 2r6a_A DNAB helicase, replicat 96.2 0.01 3.4E-07 62.0 8.5 38 244-281 199-240 (454)
234 2f6r_A COA synthase, bifunctio 96.2 0.0019 6.5E-08 63.2 2.7 31 249-280 76-106 (281)
235 1u8z_A RAS-related protein RAL 96.2 0.011 3.9E-07 51.1 7.5 23 249-271 5-27 (168)
236 3dm5_A SRP54, signal recogniti 96.2 0.0056 1.9E-07 63.7 6.3 62 220-282 73-137 (443)
237 3c8u_A Fructokinase; YP_612366 96.2 0.0036 1.2E-07 58.0 4.3 26 248-273 22-47 (208)
238 2qmh_A HPR kinase/phosphorylas 96.2 0.0021 7.1E-08 59.8 2.6 32 248-280 34-65 (205)
239 3fdi_A Uncharacterized protein 96.1 0.0024 8.2E-08 59.3 3.0 30 249-278 7-36 (201)
240 1r8s_A ADP-ribosylation factor 96.1 0.03 1E-06 48.5 10.0 21 251-271 3-23 (164)
241 3d3q_A TRNA delta(2)-isopenten 96.1 0.0025 8.6E-08 64.1 3.3 33 249-281 8-40 (340)
242 3tau_A Guanylate kinase, GMP k 96.1 0.0025 8.7E-08 59.1 3.0 27 248-274 8-34 (208)
243 3tkl_A RAS-related protein RAB 96.1 0.0088 3E-07 53.8 6.5 24 249-272 17-40 (196)
244 2a9k_A RAS-related protein RAL 96.1 0.014 5E-07 51.6 7.9 23 249-271 19-41 (187)
245 4dsu_A GTPase KRAS, isoform 2B 96.1 0.0092 3.1E-07 53.1 6.5 23 250-272 6-28 (189)
246 1c1y_A RAS-related protein RAP 96.1 0.011 3.7E-07 51.4 6.8 22 250-271 5-26 (167)
247 1z0f_A RAB14, member RAS oncog 96.1 0.012 4.3E-07 51.6 7.3 24 249-272 16-39 (179)
248 2efe_B Small GTP-binding prote 96.1 0.011 3.6E-07 52.4 6.8 23 249-271 13-35 (181)
249 1g41_A Heat shock protein HSLU 96.0 0.003 1E-07 65.9 3.4 95 291-400 242-346 (444)
250 3tr0_A Guanylate kinase, GMP k 96.0 0.0033 1.1E-07 57.5 3.4 26 248-273 7-32 (205)
251 1r2q_A RAS-related protein RAB 96.0 0.0083 2.8E-07 52.2 5.9 23 249-271 7-29 (170)
252 2oil_A CATX-8, RAS-related pro 96.0 0.0085 2.9E-07 54.0 6.2 23 249-271 26-48 (193)
253 2px0_A Flagellar biosynthesis 96.0 0.012 4.3E-07 57.9 7.8 35 248-282 105-143 (296)
254 2bov_A RAla, RAS-related prote 96.0 0.017 5.7E-07 52.3 8.1 23 249-271 15-37 (206)
255 2atv_A RERG, RAS-like estrogen 96.0 0.015 5.2E-07 52.6 7.5 24 248-271 28-51 (196)
256 3q72_A GTP-binding protein RAD 95.9 0.0051 1.7E-07 53.7 4.1 21 250-270 4-24 (166)
257 2fz4_A DNA repair protein RAD2 95.9 0.011 3.6E-07 56.2 6.6 32 250-281 110-141 (237)
258 3a00_A Guanylate kinase, GMP k 95.9 0.0039 1.3E-07 56.7 3.1 25 249-273 2-26 (186)
259 3exa_A TRNA delta(2)-isopenten 95.9 0.0037 1.3E-07 62.2 3.1 33 249-281 4-36 (322)
260 3asz_A Uridine kinase; cytidin 95.9 0.0031 1E-07 58.2 2.3 30 249-278 7-38 (211)
261 3t1o_A Gliding protein MGLA; G 95.9 0.021 7.2E-07 51.0 7.9 24 249-272 15-38 (198)
262 1t6n_A Probable ATP-dependent 95.8 0.023 8E-07 52.4 8.4 58 209-269 12-72 (220)
263 1lvg_A Guanylate kinase, GMP k 95.8 0.0043 1.5E-07 57.1 3.1 26 248-273 4-29 (198)
264 3bc1_A RAS-related protein RAB 95.8 0.014 4.8E-07 52.0 6.4 23 249-271 12-34 (195)
265 3b6e_A Interferon-induced heli 95.8 0.017 5.9E-07 52.7 7.2 24 249-272 49-72 (216)
266 1tf7_A KAIC; homohexamer, hexa 95.8 0.021 7.1E-07 60.7 8.8 29 244-272 277-305 (525)
267 2nzj_A GTP-binding protein REM 95.8 0.0091 3.1E-07 52.4 4.9 22 250-271 6-27 (175)
268 1ex7_A Guanylate kinase; subst 95.7 0.006 2E-07 56.1 3.8 26 249-274 2-27 (186)
269 1zd9_A ADP-ribosylation factor 95.7 0.02 6.7E-07 51.5 7.2 22 250-271 24-45 (188)
270 3con_A GTPase NRAS; structural 95.7 0.011 3.7E-07 53.0 5.4 23 250-272 23-45 (190)
271 3gmt_A Adenylate kinase; ssgci 95.7 0.0041 1.4E-07 59.1 2.7 29 251-279 11-39 (230)
272 2v9p_A Replication protein E1; 95.7 0.0052 1.8E-07 60.9 3.5 33 244-276 122-154 (305)
273 3dz8_A RAS-related protein RAB 95.7 0.011 3.6E-07 53.4 5.3 23 250-272 25-47 (191)
274 1vec_A ATP-dependent RNA helic 95.7 0.041 1.4E-06 50.0 9.4 19 248-266 40-58 (206)
275 3b9q_A Chloroplast SRP recepto 95.7 0.0057 2E-07 60.5 3.7 53 220-272 70-124 (302)
276 1x3s_A RAS-related protein RAB 95.7 0.014 4.8E-07 52.2 6.0 23 249-271 16-38 (195)
277 1w4r_A Thymidine kinase; type 95.7 0.011 3.7E-07 54.7 5.3 63 249-311 21-103 (195)
278 3kkq_A RAS-related protein M-R 95.7 0.014 4.7E-07 51.9 5.9 23 249-271 19-41 (183)
279 3thx_B DNA mismatch repair pro 95.7 0.021 7.1E-07 64.8 8.5 66 247-312 672-765 (918)
280 1htw_A HI0065; nucleotide-bind 95.6 0.007 2.4E-07 54.0 3.7 27 246-272 31-57 (158)
281 1hv8_A Putative ATP-dependent 95.6 0.047 1.6E-06 53.8 10.2 57 211-270 6-66 (367)
282 2v3c_C SRP54, signal recogniti 95.6 0.011 3.9E-07 61.4 5.8 64 248-311 99-192 (432)
283 2xau_A PRE-mRNA-splicing facto 95.6 0.031 1.1E-06 62.3 9.7 59 211-271 72-132 (773)
284 3kl4_A SRP54, signal recogniti 95.6 0.0074 2.5E-07 62.7 4.4 34 248-281 97-133 (433)
285 1cr0_A DNA primase/helicase; R 95.6 0.0049 1.7E-07 60.2 2.9 37 244-280 31-71 (296)
286 2erx_A GTP-binding protein DI- 95.6 0.014 4.7E-07 50.9 5.5 21 250-270 5-25 (172)
287 1z6g_A Guanylate kinase; struc 95.6 0.0061 2.1E-07 57.0 3.4 26 247-272 22-47 (218)
288 3ice_A Transcription terminati 95.6 0.057 1.9E-06 55.2 10.6 25 248-272 174-198 (422)
289 1x6v_B Bifunctional 3'-phospho 95.6 0.0078 2.7E-07 65.4 4.6 33 248-280 52-87 (630)
290 1znw_A Guanylate kinase, GMP k 95.6 0.0062 2.1E-07 56.3 3.2 27 247-273 19-45 (207)
291 3clv_A RAB5 protein, putative; 95.6 0.021 7.1E-07 51.1 6.7 23 249-271 8-30 (208)
292 3bor_A Human initiation factor 95.6 0.046 1.6E-06 51.3 9.4 53 210-265 29-84 (237)
293 3thx_A DNA mismatch repair pro 95.6 0.037 1.3E-06 62.9 10.1 65 248-312 662-754 (934)
294 2hup_A RAS-related protein RAB 95.6 0.023 7.8E-07 51.8 7.0 23 249-271 30-52 (201)
295 1zbd_A Rabphilin-3A; G protein 95.5 0.018 6.3E-07 52.2 6.3 23 249-271 9-31 (203)
296 2pl3_A Probable ATP-dependent 95.5 0.044 1.5E-06 51.2 9.1 53 210-265 24-79 (236)
297 3ney_A 55 kDa erythrocyte memb 95.5 0.0075 2.6E-07 55.9 3.5 26 248-273 19-44 (197)
298 3eph_A TRNA isopentenyltransfe 95.5 0.006 2.1E-07 62.7 3.1 33 248-280 2-34 (409)
299 4eaq_A DTMP kinase, thymidylat 95.5 0.0073 2.5E-07 57.1 3.5 30 249-278 27-58 (229)
300 1wb9_A DNA mismatch repair pro 95.5 0.031 1.1E-06 62.5 9.1 24 248-271 607-630 (800)
301 3hdt_A Putative kinase; struct 95.5 0.006 2E-07 57.7 2.7 30 249-278 15-44 (223)
302 2y8e_A RAB-protein 6, GH09086P 95.5 0.01 3.5E-07 52.2 4.1 22 250-271 16-37 (179)
303 1odf_A YGR205W, hypothetical 3 95.4 0.0094 3.2E-07 58.6 4.1 28 247-274 30-57 (290)
304 2p5s_A RAS and EF-hand domain 95.4 0.023 8E-07 51.5 6.5 23 249-271 29-51 (199)
305 3llm_A ATP-dependent RNA helic 95.4 0.047 1.6E-06 51.3 8.8 22 248-269 76-97 (235)
306 2h57_A ADP-ribosylation factor 95.4 0.013 4.4E-07 52.7 4.6 23 250-272 23-45 (190)
307 2fg5_A RAB-22B, RAS-related pr 95.4 0.014 4.8E-07 52.7 4.9 24 249-272 24-47 (192)
308 3q85_A GTP-binding protein REM 95.4 0.017 5.8E-07 50.4 5.3 20 251-270 5-24 (169)
309 2bme_A RAB4A, RAS-related prot 95.4 0.013 4.4E-07 52.2 4.5 24 249-272 11-34 (186)
310 2eyu_A Twitching motility prot 95.3 0.0096 3.3E-07 57.6 3.8 27 246-272 23-49 (261)
311 2gk6_A Regulator of nonsense t 95.3 0.012 4E-07 64.1 4.8 24 249-272 196-219 (624)
312 1gtv_A TMK, thymidylate kinase 95.3 0.0032 1.1E-07 58.0 0.3 23 251-273 3-25 (214)
313 2og2_A Putative signal recogni 95.3 0.0082 2.8E-07 60.9 3.3 52 221-272 128-181 (359)
314 1fzq_A ADP-ribosylation factor 95.3 0.052 1.8E-06 48.4 8.4 23 249-271 17-39 (181)
315 3bh0_A DNAB-like replicative h 95.3 0.024 8.2E-07 56.2 6.5 39 244-282 64-105 (315)
316 1vma_A Cell division protein F 95.3 0.0077 2.6E-07 59.7 2.9 59 222-281 79-140 (306)
317 2g6b_A RAS-related protein RAB 95.3 0.02 7E-07 50.4 5.5 24 249-272 11-34 (180)
318 2fn4_A P23, RAS-related protei 95.3 0.022 7.4E-07 50.1 5.6 23 249-271 10-32 (181)
319 1s96_A Guanylate kinase, GMP k 95.2 0.0093 3.2E-07 56.1 3.3 28 246-273 14-41 (219)
320 2yhs_A FTSY, cell division pro 95.2 0.0084 2.9E-07 63.2 3.2 25 248-272 293-317 (503)
321 4dkx_A RAS-related protein RAB 95.2 0.022 7.5E-07 53.3 5.8 20 251-270 16-35 (216)
322 1p9r_A General secretion pathw 95.2 0.02 6.7E-07 59.3 5.9 50 210-273 143-192 (418)
323 1z06_A RAS-related protein RAB 95.2 0.024 8.3E-07 50.8 5.9 23 249-271 21-43 (189)
324 2il1_A RAB12; G-protein, GDP, 95.2 0.023 7.8E-07 51.3 5.7 21 250-270 28-48 (192)
325 1upt_A ARL1, ADP-ribosylation 95.2 0.02 6.8E-07 50.0 5.1 23 249-271 8-30 (171)
326 3e70_C DPA, signal recognition 95.2 0.019 6.4E-07 57.5 5.4 27 246-272 127-153 (328)
327 1c9k_A COBU, adenosylcobinamid 95.2 0.015 5.1E-07 53.1 4.2 33 251-284 2-34 (180)
328 1zj6_A ADP-ribosylation factor 95.2 0.057 2E-06 48.2 8.2 23 248-270 16-38 (187)
329 1wms_A RAB-9, RAB9, RAS-relate 95.1 0.015 5.1E-07 51.2 4.1 23 249-271 8-30 (177)
330 2oxc_A Probable ATP-dependent 95.1 0.053 1.8E-06 50.6 8.1 54 209-265 22-78 (230)
331 1g16_A RAS-related protein SEC 95.1 0.016 5.5E-07 50.4 4.2 22 250-271 5-26 (170)
332 3lxx_A GTPase IMAP family memb 95.1 0.049 1.7E-06 51.2 7.9 24 249-272 30-53 (239)
333 1z08_A RAS-related protein RAB 95.1 0.0072 2.5E-07 52.8 1.9 23 249-271 7-29 (170)
334 2b6h_A ADP-ribosylation factor 95.1 0.03 1E-06 50.7 6.1 22 249-270 30-51 (192)
335 1zu4_A FTSY; GTPase, signal re 95.1 0.016 5.3E-07 57.8 4.5 36 247-282 104-142 (320)
336 2f7s_A C25KG, RAS-related prot 95.1 0.038 1.3E-06 50.7 6.8 23 249-271 26-48 (217)
337 2ewv_A Twitching motility prot 95.1 0.013 4.3E-07 59.7 3.9 29 245-273 133-161 (372)
338 2hxs_A RAB-26, RAS-related pro 95.1 0.021 7.1E-07 50.3 4.8 23 249-271 7-29 (178)
339 2a5j_A RAS-related protein RAB 95.0 0.018 6.3E-07 51.8 4.5 22 250-271 23-44 (191)
340 1a7j_A Phosphoribulokinase; tr 95.0 0.0047 1.6E-07 60.7 0.4 36 250-285 7-45 (290)
341 2jeo_A Uridine-cytidine kinase 95.0 0.012 4E-07 55.9 3.2 26 250-275 27-52 (245)
342 2ew1_A RAS-related protein RAB 95.0 0.018 6E-07 52.9 4.2 23 249-271 27-49 (201)
343 3pey_A ATP-dependent RNA helic 94.9 0.13 4.5E-06 51.1 11.0 53 211-266 5-62 (395)
344 4f4c_A Multidrug resistance pr 94.9 0.054 1.9E-06 63.9 9.3 29 245-273 441-469 (1321)
345 2gf9_A RAS-related protein RAB 94.9 0.016 5.4E-07 52.0 3.7 23 250-272 24-46 (189)
346 2fu5_C RAS-related protein RAB 94.9 0.011 3.8E-07 52.5 2.7 23 249-271 9-31 (183)
347 2gf0_A GTP-binding protein DI- 94.9 0.028 9.7E-07 50.5 5.3 23 249-271 9-31 (199)
348 2ged_A SR-beta, signal recogni 94.9 0.022 7.6E-07 51.1 4.6 26 247-272 47-72 (193)
349 3ber_A Probable ATP-dependent 94.9 0.13 4.6E-06 48.7 10.3 52 211-265 43-97 (249)
350 3oes_A GTPase rhebl1; small GT 94.9 0.014 4.9E-07 53.0 3.3 24 249-272 25-48 (201)
351 2axn_A 6-phosphofructo-2-kinas 94.9 0.013 4.4E-07 62.4 3.4 26 248-273 35-60 (520)
352 2bcg_Y Protein YP2, GTP-bindin 94.8 0.015 5.3E-07 52.9 3.5 23 249-271 9-31 (206)
353 3lnc_A Guanylate kinase, GMP k 94.8 0.0073 2.5E-07 56.7 1.2 26 248-273 27-53 (231)
354 2wjy_A Regulator of nonsense t 94.8 0.02 6.8E-07 64.1 4.8 24 249-272 372-395 (800)
355 3kw6_A 26S protease regulatory 94.8 0.033 1.1E-06 43.2 4.7 46 388-433 1-47 (78)
356 2va8_A SSO2462, SKI2-type heli 94.8 0.14 4.9E-06 56.2 11.7 20 247-266 45-64 (715)
357 3iuy_A Probable ATP-dependent 94.8 0.073 2.5E-06 49.4 8.0 18 248-265 57-74 (228)
358 3tqf_A HPR(Ser) kinase; transf 94.7 0.011 3.9E-07 53.6 2.2 30 247-277 15-44 (181)
359 3tqc_A Pantothenate kinase; bi 94.7 0.026 8.8E-07 56.3 5.0 24 250-273 94-117 (321)
360 1q0u_A Bstdead; DEAD protein, 94.7 0.066 2.3E-06 49.4 7.6 17 249-265 42-58 (219)
361 3ly5_A ATP-dependent RNA helic 94.7 0.37 1.3E-05 45.9 13.1 18 249-266 92-109 (262)
362 2z0m_A 337AA long hypothetical 94.7 0.15 5E-06 49.6 10.4 28 249-276 32-59 (337)
363 3cph_A RAS-related protein SEC 94.7 0.032 1.1E-06 50.7 5.3 23 249-271 21-43 (213)
364 1np6_A Molybdopterin-guanine d 94.7 0.017 5.8E-07 52.4 3.2 25 248-272 6-30 (174)
365 1rj9_A FTSY, signal recognitio 94.7 0.017 5.9E-07 57.1 3.5 25 248-272 102-126 (304)
366 3cbq_A GTP-binding protein REM 94.6 0.036 1.2E-06 50.4 5.4 21 250-270 25-45 (195)
367 1m2o_B GTP-binding protein SAR 94.6 0.035 1.2E-06 50.0 5.3 21 250-270 25-45 (190)
368 2fh5_B SR-beta, signal recogni 94.6 0.034 1.2E-06 50.8 5.2 24 249-272 8-31 (214)
369 1ewq_A DNA mismatch repair pro 94.6 0.056 1.9E-06 60.1 7.8 25 248-272 576-600 (765)
370 4i1u_A Dephospho-COA kinase; s 94.6 0.017 5.9E-07 54.0 3.1 31 250-281 11-41 (210)
371 3fe2_A Probable ATP-dependent 94.6 0.12 4.2E-06 48.4 9.1 52 211-265 29-83 (242)
372 1sq5_A Pantothenate kinase; P- 94.5 0.015 5.3E-07 57.3 2.8 25 249-273 81-105 (308)
373 1m8p_A Sulfate adenylyltransfe 94.5 0.019 6.4E-07 61.9 3.7 33 249-281 397-433 (573)
374 2q6t_A DNAB replication FORK h 94.5 0.025 8.7E-07 58.7 4.5 38 244-281 196-237 (444)
375 1xx6_A Thymidine kinase; NESG, 94.5 0.057 1.9E-06 49.6 6.3 63 249-311 9-93 (191)
376 3aez_A Pantothenate kinase; tr 94.4 0.02 6.9E-07 56.8 3.4 26 248-273 90-115 (312)
377 3kta_A Chromosome segregation 94.4 0.018 6E-07 51.7 2.7 24 250-273 28-51 (182)
378 2ocp_A DGK, deoxyguanosine kin 94.4 0.02 6.7E-07 54.1 3.0 25 249-273 3-27 (241)
379 2j37_W Signal recognition part 94.3 0.024 8.2E-07 60.0 3.9 34 248-281 101-137 (504)
380 1w36_D RECD, exodeoxyribonucle 94.3 0.026 8.8E-07 61.2 4.3 25 248-272 164-188 (608)
381 3llu_A RAS-related GTP-binding 94.3 0.058 2E-06 48.7 6.1 24 249-272 21-44 (196)
382 1p5z_B DCK, deoxycytidine kina 94.3 0.0089 3E-07 57.4 0.5 29 249-277 25-54 (263)
383 4edh_A DTMP kinase, thymidylat 94.3 0.02 6.8E-07 53.6 2.9 30 250-279 8-40 (213)
384 2h17_A ADP-ribosylation factor 94.3 0.041 1.4E-06 48.9 4.9 22 250-271 23-44 (181)
385 1fuu_A Yeast initiation factor 94.3 0.26 8.7E-06 49.1 11.3 53 210-265 20-75 (394)
386 3v9p_A DTMP kinase, thymidylat 94.3 0.026 8.7E-07 53.5 3.5 30 250-279 27-63 (227)
387 2zj8_A DNA helicase, putative 94.3 0.17 5.9E-06 55.6 10.8 18 248-265 39-56 (720)
388 2xzl_A ATP-dependent helicase 94.2 0.027 9.2E-07 63.1 4.2 33 250-282 377-413 (802)
389 2oap_1 GSPE-2, type II secreti 94.2 0.014 4.9E-07 61.9 1.9 62 248-309 260-343 (511)
390 2dyk_A GTP-binding protein; GT 94.2 0.022 7.6E-07 49.1 2.9 22 250-271 3-24 (161)
391 2o8b_B DNA mismatch repair pro 94.2 0.077 2.6E-06 60.9 8.0 22 248-269 789-810 (1022)
392 2f9l_A RAB11B, member RAS onco 94.2 0.021 7.1E-07 51.9 2.8 23 250-272 7-29 (199)
393 3fmo_B ATP-dependent RNA helic 94.1 0.22 7.4E-06 48.7 10.2 52 211-265 92-148 (300)
394 1bif_A 6-phosphofructo-2-kinas 94.1 0.013 4.3E-07 61.5 1.2 26 248-273 39-64 (469)
395 1z2a_A RAS-related protein RAB 94.1 0.022 7.7E-07 49.4 2.7 23 249-271 6-28 (168)
396 4a82_A Cystic fibrosis transme 94.1 0.073 2.5E-06 57.2 7.2 28 246-273 365-392 (578)
397 1lw7_A Transcriptional regulat 94.1 0.022 7.7E-07 57.5 3.0 28 248-275 170-197 (365)
398 1oix_A RAS-related protein RAB 94.1 0.02 6.9E-07 51.8 2.3 23 250-272 31-53 (191)
399 2xxa_A Signal recognition part 94.1 0.029 1E-06 58.3 3.8 37 247-283 99-139 (433)
400 2cbz_A Multidrug resistance-as 94.1 0.015 5.2E-07 55.3 1.5 26 247-272 30-55 (237)
401 4a1f_A DNAB helicase, replicat 94.0 0.035 1.2E-06 55.7 4.2 38 244-281 42-82 (338)
402 3tif_A Uncharacterized ABC tra 94.0 0.016 5.5E-07 55.0 1.6 28 247-274 30-57 (235)
403 1xjc_A MOBB protein homolog; s 94.0 0.027 9.2E-07 50.9 2.9 32 249-280 5-39 (169)
404 3pqc_A Probable GTP-binding pr 94.0 0.15 5.1E-06 45.2 8.0 23 249-271 24-46 (195)
405 1f6b_A SAR1; gtpases, N-termin 94.0 0.03 1E-06 50.9 3.3 21 250-270 27-47 (198)
406 3t34_A Dynamin-related protein 93.9 0.2 6.8E-06 50.3 9.6 21 250-270 36-56 (360)
407 2o52_A RAS-related protein RAB 93.9 0.019 6.6E-07 52.2 1.9 22 249-270 26-47 (200)
408 2onk_A Molybdate/tungstate ABC 93.8 0.021 7.2E-07 54.5 2.0 25 249-273 25-49 (240)
409 3b85_A Phosphate starvation-in 93.8 0.023 7.9E-07 52.9 2.3 23 249-271 23-45 (208)
410 1s2m_A Putative ATP-dependent 93.8 0.11 3.7E-06 52.2 7.4 54 210-266 20-76 (400)
411 2pcj_A ABC transporter, lipopr 93.8 0.014 4.9E-07 54.9 0.7 27 248-274 30-56 (224)
412 1g8f_A Sulfate adenylyltransfe 93.8 0.023 7.7E-07 60.3 2.3 26 249-274 396-421 (511)
413 2www_A Methylmalonic aciduria 93.7 0.097 3.3E-06 52.6 6.9 24 249-272 75-98 (349)
414 3tmk_A Thymidylate kinase; pho 93.7 0.038 1.3E-06 51.9 3.6 29 249-277 6-34 (216)
415 1b0u_A Histidine permease; ABC 93.7 0.02 6.8E-07 55.3 1.6 27 248-274 32-58 (262)
416 4f4c_A Multidrug resistance pr 93.7 0.045 1.5E-06 64.7 4.9 27 246-272 1103-1129(1321)
417 3l0o_A Transcription terminati 93.7 0.12 4.1E-06 52.8 7.3 22 251-272 178-199 (427)
418 1sgw_A Putative ABC transporte 93.7 0.021 7.3E-07 53.5 1.8 26 248-273 35-60 (214)
419 2wji_A Ferrous iron transport 93.7 0.03 1E-06 49.2 2.6 22 250-271 5-26 (165)
420 3bgw_A DNAB-like replicative h 93.7 0.044 1.5E-06 57.1 4.3 39 244-282 193-234 (444)
421 2j1l_A RHO-related GTP-binding 93.7 0.03 1E-06 51.6 2.7 22 249-270 35-56 (214)
422 1ky3_A GTP-binding protein YPT 93.6 0.033 1.1E-06 49.0 2.9 24 249-272 9-32 (182)
423 2ffh_A Protein (FFH); SRP54, s 93.6 0.068 2.3E-06 55.3 5.6 35 247-281 97-134 (425)
424 1q57_A DNA primase/helicase; d 93.6 0.038 1.3E-06 58.3 3.8 39 244-282 238-280 (503)
425 3p32_A Probable GTPase RV1496/ 93.6 0.048 1.7E-06 54.9 4.4 32 249-280 80-114 (355)
426 1j8m_F SRP54, signal recogniti 93.6 0.039 1.3E-06 54.3 3.6 36 248-283 98-136 (297)
427 1mv5_A LMRA, multidrug resista 93.6 0.02 6.9E-07 54.6 1.4 27 247-273 27-53 (243)
428 2pze_A Cystic fibrosis transme 93.6 0.019 6.5E-07 54.2 1.2 26 248-273 34-59 (229)
429 4djt_A GTP-binding nuclear pro 93.6 0.014 4.7E-07 53.7 0.2 22 249-270 12-33 (218)
430 3sop_A Neuronal-specific septi 93.6 0.027 9.2E-07 54.6 2.3 24 250-273 4-27 (270)
431 2zej_A Dardarin, leucine-rich 93.5 0.027 9.2E-07 50.4 2.1 21 250-270 4-24 (184)
432 3fht_A ATP-dependent RNA helic 93.5 0.26 8.8E-06 49.4 9.6 52 211-265 25-81 (412)
433 3cpj_B GTP-binding protein YPT 93.5 0.033 1.1E-06 51.6 2.7 23 249-271 14-36 (223)
434 1g6h_A High-affinity branched- 93.5 0.02 6.8E-07 55.1 1.2 26 248-273 33-58 (257)
435 2olj_A Amino acid ABC transpor 93.5 0.023 7.8E-07 55.0 1.6 27 248-274 50-76 (263)
436 2ghi_A Transport protein; mult 93.5 0.023 7.7E-07 54.9 1.6 27 247-273 45-71 (260)
437 2ixe_A Antigen peptide transpo 93.4 0.023 7.9E-07 55.2 1.6 27 247-273 44-70 (271)
438 3b1v_A Ferrous iron uptake tra 93.4 0.098 3.3E-06 50.7 6.0 22 250-271 5-26 (272)
439 2zu0_C Probable ATP-dependent 93.4 0.032 1.1E-06 54.0 2.4 25 248-272 46-70 (267)
440 2wjg_A FEOB, ferrous iron tran 93.3 0.032 1.1E-06 49.7 2.3 23 249-271 8-30 (188)
441 2j0s_A ATP-dependent RNA helic 93.3 0.34 1.2E-05 48.7 10.2 53 211-266 37-92 (410)
442 2ff7_A Alpha-hemolysin translo 93.3 0.022 7.5E-07 54.5 1.2 26 248-273 35-60 (247)
443 2qi9_C Vitamin B12 import ATP- 93.3 0.023 7.8E-07 54.5 1.2 27 248-274 26-52 (249)
444 2d2e_A SUFC protein; ABC-ATPas 93.2 0.03 1E-06 53.6 2.0 24 248-271 29-52 (250)
445 3eiq_A Eukaryotic initiation f 93.2 0.17 5.8E-06 50.9 7.8 53 211-266 40-95 (414)
446 3gfo_A Cobalt import ATP-bindi 93.2 0.023 8E-07 55.3 1.2 26 248-273 34-59 (275)
447 2gza_A Type IV secretion syste 93.2 0.03 1E-06 56.7 2.0 27 247-273 174-200 (361)
448 3fvq_A Fe(3+) IONS import ATP- 93.2 0.026 8.8E-07 57.2 1.6 24 249-272 31-54 (359)
449 1ji0_A ABC transporter; ATP bi 93.2 0.024 8.1E-07 54.0 1.2 27 248-274 32-58 (240)
450 1vpl_A ABC transporter, ATP-bi 93.2 0.031 1E-06 53.9 2.0 26 248-273 41-66 (256)
451 3iby_A Ferrous iron transport 93.2 0.071 2.4E-06 51.1 4.6 22 250-271 3-24 (256)
452 2it1_A 362AA long hypothetical 93.2 0.035 1.2E-06 56.2 2.5 25 249-273 30-54 (362)
453 3cr8_A Sulfate adenylyltranfer 93.1 0.03 1E-06 60.0 2.0 25 249-273 370-394 (552)
454 2yyz_A Sugar ABC transporter, 93.1 0.036 1.2E-06 56.1 2.5 25 248-272 29-53 (359)
455 1yrb_A ATP(GTP)binding protein 93.1 0.072 2.5E-06 50.4 4.5 32 250-281 16-49 (262)
456 3gj0_A GTP-binding nuclear pro 93.1 0.053 1.8E-06 49.9 3.4 23 250-272 17-40 (221)
457 3rlf_A Maltose/maltodextrin im 93.1 0.037 1.3E-06 56.4 2.5 25 249-273 30-54 (381)
458 1v43_A Sugar-binding transport 93.0 0.033 1.1E-06 56.6 2.1 25 248-272 37-61 (372)
459 2pt7_A CAG-ALFA; ATPase, prote 93.0 0.029 9.9E-07 56.1 1.7 26 248-273 171-196 (330)
460 1tf7_A KAIC; homohexamer, hexa 93.0 0.033 1.1E-06 59.1 2.2 28 245-272 36-65 (525)
461 2wsm_A Hydrogenase expression/ 93.0 0.084 2.9E-06 48.5 4.7 25 249-273 31-55 (221)
462 1f2t_A RAD50 ABC-ATPase; DNA d 93.0 0.049 1.7E-06 47.8 2.9 22 251-272 26-47 (149)
463 2yz2_A Putative ABC transporte 93.0 0.029 1E-06 54.2 1.6 26 248-273 33-58 (266)
464 1z47_A CYSA, putative ABC-tran 93.0 0.034 1.2E-06 56.2 2.1 26 248-273 41-66 (355)
465 2ihy_A ABC transporter, ATP-bi 93.0 0.026 9.1E-07 55.0 1.2 26 248-273 47-72 (279)
466 2lkc_A Translation initiation 93.0 0.047 1.6E-06 47.9 2.8 23 248-270 8-30 (178)
467 2nq2_C Hypothetical ABC transp 93.0 0.026 9.1E-07 54.2 1.2 26 248-273 31-56 (253)
468 3def_A T7I23.11 protein; chlor 93.0 0.24 8E-06 47.3 7.9 25 248-272 36-60 (262)
469 2krk_A 26S protease regulatory 93.0 0.13 4.4E-06 40.9 5.0 48 386-433 7-55 (86)
470 4g1u_C Hemin import ATP-bindin 92.9 0.026 8.9E-07 54.7 1.1 26 248-273 37-62 (266)
471 2f1r_A Molybdopterin-guanine d 92.9 0.024 8.3E-07 51.2 0.8 24 250-273 4-27 (171)
472 1m7b_A RND3/RHOE small GTP-bin 92.9 0.041 1.4E-06 49.0 2.3 23 249-271 8-30 (184)
473 1qhl_A Protein (cell division 92.9 0.023 8E-07 53.8 0.6 23 251-273 30-52 (227)
474 3lv8_A DTMP kinase, thymidylat 92.9 0.045 1.5E-06 52.1 2.6 24 249-272 28-51 (236)
475 3ld9_A DTMP kinase, thymidylat 92.9 0.05 1.7E-06 51.3 2.9 26 249-274 22-47 (223)
476 2qm8_A GTPase/ATPase; G protei 92.8 0.056 1.9E-06 54.1 3.4 24 249-272 56-79 (337)
477 3tw8_B RAS-related protein RAB 92.8 0.046 1.6E-06 47.9 2.5 22 249-270 10-31 (181)
478 3d31_A Sulfate/molybdate ABC t 92.8 0.033 1.1E-06 56.2 1.6 26 248-273 26-51 (348)
479 1mh1_A RAC1; GTP-binding, GTPa 92.8 0.052 1.8E-06 47.9 2.8 22 250-271 7-28 (186)
480 1g29_1 MALK, maltose transport 92.8 0.038 1.3E-06 56.2 2.1 26 248-273 29-54 (372)
481 4tmk_A Protein (thymidylate ki 92.7 0.046 1.6E-06 51.1 2.4 23 250-272 5-27 (213)
482 3dpu_A RAB family protein; roc 92.7 0.22 7.5E-06 52.8 8.0 22 250-271 43-64 (535)
483 3fmp_B ATP-dependent RNA helic 92.7 0.66 2.3E-05 48.0 11.6 52 211-265 92-148 (479)
484 2obl_A ESCN; ATPase, hydrolase 92.7 0.068 2.3E-06 53.8 3.8 29 249-277 72-100 (347)
485 3r7w_A Gtpase1, GTP-binding pr 92.7 0.11 3.9E-06 50.9 5.4 23 249-271 4-26 (307)
486 2gj8_A MNME, tRNA modification 92.6 0.039 1.3E-06 49.0 1.8 22 250-271 6-27 (172)
487 3bwd_D RAC-like GTP-binding pr 92.6 0.057 1.9E-06 47.6 2.8 23 249-271 9-31 (182)
488 3c5c_A RAS-like protein 12; GD 92.6 0.057 2E-06 48.4 2.9 22 250-271 23-44 (187)
489 2c61_A A-type ATP synthase non 92.6 0.76 2.6E-05 47.9 11.6 24 251-274 155-178 (469)
490 2iwr_A Centaurin gamma 1; ANK 92.6 0.043 1.5E-06 48.3 1.9 22 250-271 9-30 (178)
491 2npi_A Protein CLP1; CLP1-PCF1 92.6 0.053 1.8E-06 56.7 2.9 28 245-272 135-162 (460)
492 1svi_A GTP-binding protein YSX 92.5 0.039 1.3E-06 49.4 1.6 23 249-271 24-46 (195)
493 3ihw_A Centg3; RAS, centaurin, 92.5 0.061 2.1E-06 48.3 2.9 22 250-271 22-43 (184)
494 1vg8_A RAS-related protein RAB 92.5 0.06 2.1E-06 48.6 2.9 24 249-272 9-32 (207)
495 4hlc_A DTMP kinase, thymidylat 92.5 0.093 3.2E-06 48.6 4.2 29 251-279 5-35 (205)
496 2i4i_A ATP-dependent RNA helic 92.4 0.35 1.2E-05 48.6 8.9 51 211-264 15-68 (417)
497 2pjz_A Hypothetical protein ST 92.4 0.039 1.3E-06 53.4 1.5 25 248-272 30-54 (263)
498 2cxx_A Probable GTP-binding pr 92.4 0.038 1.3E-06 49.1 1.4 21 251-271 4-24 (190)
499 1ls1_A Signal recognition part 92.4 0.11 3.7E-06 51.0 4.7 34 248-281 98-134 (295)
500 1oxx_K GLCV, glucose, ABC tran 92.3 0.032 1.1E-06 56.4 0.9 25 248-272 31-55 (353)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-41 Score=345.77 Aligned_cols=212 Identities=27% Similarity=0.366 Sum_probs=182.2
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~---- 284 (487)
+..+|++|+|.+++|++|.+.+..++.+|+.|.++|.++|+|+|||||||||||+||+|+|++++.+++.++++.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 222 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred --cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceE
Q 011374 285 --EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERI 360 (487)
Q Consensus 285 --~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~i 360 (487)
++...++.+|..+ ..||||||||||+++..+...... ++.....++++||+.|||+... .+++
T Consensus 223 vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~-----------~~~~~~~~l~~lL~~lDg~~~~--~~V~ 289 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGG-----------GDSEVQRTMLELLNQLDGFETS--KNIK 289 (405)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSG-----------GGGHHHHHHHHHHHHHHTTTCC--CCEE
T ss_pred cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCC-----------CcHHHHHHHHHHHHhhhccCCC--CCeE
Confidence 3467889999776 569999999999997644321110 0233467899999999999764 4599
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 361 IIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 361 iI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
||+|||+|+.|||||+||||||.+|+|++|+.++|++|++.++.........++..++..+ ++|+|||..+|.
T Consensus 290 vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~ 363 (405)
T 4b4t_J 290 IIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCT 363 (405)
T ss_dssp EEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred EEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999765433334577777764 599999998884
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-40 Score=343.47 Aligned_cols=214 Identities=25% Similarity=0.328 Sum_probs=182.0
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc--
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV-- 284 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~-- 284 (487)
-.+..+|++|+|.+++|++|.+.+..|+.++++|.+.|.+|++|||||||||||||+||+|+|++++.+++.++.+++
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 345579999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred ----cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCc
Q 011374 285 ----EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDE 358 (487)
Q Consensus 285 ----~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~ 358 (487)
++...++.+|..+ ..||||||||||+++..+...... ++.....++++||+.|||+... ++
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~-----------~~~~~~~~l~~LL~~lDg~~~~--~~ 321 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSG-----------GEREIQRTMLELLNQLDGFDDR--GD 321 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCS-----------SCCHHHHHHHHHHHHHHHCCCS--SS
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCC-----------ccHHHHHHHHHHHHHhhCcCCC--CC
Confidence 2457788888766 569999999999997644221110 0233467899999999998654 56
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 359 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 359 ~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
++||+|||+|+.|||||+||||||.+|+|++|+.++|++|++.++.........+++.++... +||+|||.++|.
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~ 397 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCT 397 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999754433333567777654 599999998884
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-40 Score=342.09 Aligned_cols=214 Identities=25% Similarity=0.315 Sum_probs=181.2
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc--
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV-- 284 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~-- 284 (487)
-.++.+|++|+|.+++|++|.+.+..|+.+++.|.++|.++|+|||||||||||||+||+|+|++++.+++.++++.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 455679999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ----cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCc
Q 011374 285 ----EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDE 358 (487)
Q Consensus 285 ----~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~ 358 (487)
++...++.+|..+ ..||||||||||+++..+....... ......+++.||+.|||+.+. ++
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~-----------~~~~~~~~~~lL~~ldg~~~~--~~ 320 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSG-----------DREVQRTMLELLNQLDGFSSD--DR 320 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGT-----------THHHHHHHHHHHHHHTTSCSS--CS
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCC-----------chHHHHHHHHHHHHhhccCCC--CC
Confidence 2457788888765 5799999999999976443221110 223457889999999999764 45
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 359 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 359 ~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
++||+|||+|+.|||||+||||||.+|+|++|+.++|.+|++.++.........++..++..+ ++|+|||..+|.
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~ 396 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTV 396 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHH
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988654322223466666654 599999999884
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-40 Score=343.28 Aligned_cols=213 Identities=25% Similarity=0.347 Sum_probs=181.0
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc--
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-- 285 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~-- 285 (487)
.+..+|++|+|.+++|++|.+.+..++.+++.|.++|++|++|+|||||||||||+||+|+|++++.+++.++++.+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 345699999999999999999999999999999999999999999999999999999999999999999999998872
Q ss_pred ----ChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCce
Q 011374 286 ----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDER 359 (487)
Q Consensus 286 ----~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ 359 (487)
+...++.+|..+ ..||||||||||+++..+...+.. .+.....+++.||+.|||+.+. +++
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~-----------~~~~~~~~l~~lL~~lDg~~~~--~~v 321 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS-----------ADREIQRTLMELLTQMDGFDNL--GQT 321 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCS-----------STTHHHHHHHHHHHHHHSSSCT--TSS
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCC-----------cchHHHHHHHHHHHHhhcccCC--CCe
Confidence 456788888766 579999999999997643221110 0223467899999999999764 459
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 360 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 360 iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
+||+|||+|+.|||||+||||||.+|+||+|+.++|++|++.++.........++..++..+ +||+|||.++|.
T Consensus 322 ivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~ 396 (437)
T 4b4t_L 322 KIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCAT 396 (437)
T ss_dssp EEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHH
T ss_pred EEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998754333334567777654 599999999884
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-39 Score=339.00 Aligned_cols=213 Identities=26% Similarity=0.374 Sum_probs=180.6
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc---
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV--- 284 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~--- 284 (487)
.+..+|++|+|.+++|+.|.+.+..|+.++++|.++|++|++|+|||||||||||++|+|+|++++.+++.++++++
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 34469999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ---cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCce
Q 011374 285 ---EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDER 359 (487)
Q Consensus 285 ---~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ 359 (487)
++...++.+|..+ ..||||||||||+++..+...... ++.....++++||+.|||+.+.+ ++
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~-----------~~~~~~r~l~~lL~~ldg~~~~~--~v 312 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG-----------SDREVQRILIELLTQMDGFDQST--NV 312 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSC-----------CCCHHHHHHHHHHHHHHHSCSSC--SE
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCC-----------CChHHHHHHHHHHHHhhCCCCCC--CE
Confidence 2457889999766 569999999999997643221110 02334678999999999997754 59
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeC-CCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 360 IIIFTTNHKDRLDPALLRPGRMDVHIHMS-YCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 360 iiI~TTN~~~~LD~ALlRpGRfd~~I~~~-~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
+||+|||+|+.|||||+||||||.+|+|| +|+.++|+.|++.++.........++..++... ++|+|||..+|.
T Consensus 313 ~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~ 388 (428)
T 4b4t_K 313 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQ 388 (428)
T ss_dssp EEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHH
Confidence 99999999999999999999999999996 899999999999998654332233566776654 599999999884
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-39 Score=333.49 Aligned_cols=213 Identities=23% Similarity=0.273 Sum_probs=180.7
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc--
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-- 285 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~-- 285 (487)
.+..+|++|+|.+++|++|.+.+..++.+++.|.++|+.+++|+|||||||||||+||+|+|++++.+++.++++.+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk 282 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 282 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc
Confidence 344699999999999999999999999999999999999999999999999999999999999999999999998872
Q ss_pred ----ChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCce
Q 011374 286 ----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDER 359 (487)
Q Consensus 286 ----~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ 359 (487)
+...++.+|..+ ..||||||||||.++..|....... ......+++.||+.|||.... +++
T Consensus 283 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~-----------~~~~~~~l~~lL~~lDg~~~~--~~V 349 (467)
T 4b4t_H 283 YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGG-----------DNEVQRTMLELITQLDGFDPR--GNI 349 (467)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGG-----------GGHHHHHHHHHHHHHHSSCCT--TTE
T ss_pred cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCc-----------cHHHHHHHHHHHHHhhccCCC--CcE
Confidence 467888999766 5799999999999976442211100 223457889999999998654 569
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 360 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 360 iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
+||+|||+|+.|||||+||||||.+|+|++|+.++|++|++.++.........+++.++..+ ++|+|||..+|.
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~ 424 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCT 424 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999755433333566666654 599999998884
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4.6e-35 Score=325.73 Aligned_cols=224 Identities=21% Similarity=0.309 Sum_probs=166.1
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~---- 284 (487)
+..+|++++|.+++|+.|.+.+..++++++.|.+.|..+++|+|||||||||||++|+|+|++++.+++.++.+++
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccc
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999987775
Q ss_pred --cChHHHHHHHHHcc--CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceE
Q 011374 285 --EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERI 360 (487)
Q Consensus 285 --~~~~~l~~l~~~~~--~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~i 360 (487)
+++..++++|..+. .||||||||||+++..|....... +.....++++||+.|||+.+. .+++
T Consensus 552 vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~-----------~~~~~rv~~~lL~~mdg~~~~--~~V~ 618 (806)
T 3cf2_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG-----------GGAADRVINQILTEMDGMSTK--KNVF 618 (806)
T ss_dssp CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC-------------------------CHHHHHHHHHHHSSCSS--SSEE
T ss_pred cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCC-----------chHHHHHHHHHHHHHhCCCCC--CCEE
Confidence 56789999998874 699999999999987553221111 344578899999999999664 4599
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHhccCCHH
Q 011374 361 IIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLMRDEVPK 439 (487)
Q Consensus 361 iI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~~~~~~~ 439 (487)
||+|||+|+.||||++||||||.+|++++|+.++|++|++.++.........++..++... ++|+|||.++|. +
T Consensus 619 vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~-----~ 693 (806)
T 3cf2_A 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ-----R 693 (806)
T ss_dssp EECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHH-----H
T ss_pred EEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH-----H
Confidence 9999999999999999999999999999999999999999999755433344566676654 499999999884 4
Q ss_pred HHHHHHHHHHH
Q 011374 440 IALSGLIQFLQ 450 (487)
Q Consensus 440 ~al~~l~~~l~ 450 (487)
+++..+.+.++
T Consensus 694 A~~~a~r~~~~ 704 (806)
T 3cf2_A 694 ACKLAIRESIE 704 (806)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 45554444443
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4.5e-33 Score=309.74 Aligned_cols=220 Identities=23% Similarity=0.335 Sum_probs=185.8
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~----- 284 (487)
..+|++|+|.+++|++|.+.+..++.+++.|.++|..+++|+|||||||||||+||+++|++++.+++.+++.++
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 358999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred -cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEE
Q 011374 285 -EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERII 361 (487)
Q Consensus 285 -~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ii 361 (487)
++...++.+|..+ ..||||||||||.++..+.... +.....++++||..|||+.+. ..++|
T Consensus 280 gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~--------------~~~~~riv~~LL~~mdg~~~~--~~V~V 343 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--------------GEVERRIVSQLLTLMDGLKQR--AHVIV 343 (806)
T ss_dssp THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC--------------CTTHHHHHHHHHTHHHHCCGG--GCEEE
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC--------------ChHHHHHHHHHHHHHhccccc--CCEEE
Confidence 3467889999877 4699999999999986432111 344578899999999999765 35999
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHHHHHHhccCCHHH
Q 011374 362 IFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLMRDEVPKI 440 (487)
Q Consensus 362 I~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~~~~~~~~ 440 (487)
|+|||+++.|||||+||||||.+|+++.|+.++|++|++.++.........++..++.. .+++++|+..++. ++
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~-----eA 418 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS-----EA 418 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHH-----HH
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHH-----HH
Confidence 99999999999999999999999999999999999999999875544334456777765 4599999998874 44
Q ss_pred HHHHHHHHHH
Q 011374 441 ALSGLIQFLQ 450 (487)
Q Consensus 441 al~~l~~~l~ 450 (487)
++..+.+.+.
T Consensus 419 ~~~A~~r~~~ 428 (806)
T 3cf2_A 419 ALQAIRKKMD 428 (806)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhccc
Confidence 4444444443
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=4.4e-29 Score=250.12 Aligned_cols=212 Identities=22% Similarity=0.317 Sum_probs=174.7
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~---- 284 (487)
++.+|++|+|.+++|+.|.+.+..++..++.|...|..+++++|||||||||||++|+++|++++.+++.+++..+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred --cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceE
Q 011374 285 --EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERI 360 (487)
Q Consensus 285 --~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~i 360 (487)
.....++.+|..+ ..++||||||||.+...+...... ........++.||..||++... .+++
T Consensus 90 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~-----------~~~~~~~~~~~lL~~l~~~~~~--~~v~ 156 (301)
T 3cf0_A 90 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD-----------GGGAADRVINQILTEMDGMSTK--KNVF 156 (301)
T ss_dssp HTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCC-----------SSCSCCHHHHHHHHHHHSSCTT--SSEE
T ss_pred cCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCC-----------cchHHHHHHHHHHHHhhcccCC--CCEE
Confidence 2456678888766 458999999999987543211100 0233456789999999998543 4699
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHHHHHHh
Q 011374 361 IIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 433 (487)
Q Consensus 361 iI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 433 (487)
||+|||+++.||++++|||||+..|+++.|+.+++.+|++.++.........++..+... ..++++||.+.|.
T Consensus 157 vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~ 230 (301)
T 3cf0_A 157 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 230 (301)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHH
T ss_pred EEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999975433222344555543 4599999998874
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=3.2e-29 Score=248.18 Aligned_cols=209 Identities=22% Similarity=0.335 Sum_probs=164.7
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccC--
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG-- 286 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~-- 286 (487)
+..+|++|+|.+++|+.|.+.+..++.+++.|+.+|...++|++|+||||||||+|++++|+.++.+++.++...+..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 346899999999999999999999999999999999999999999999999999999999999999999998877632
Q ss_pred ----hHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceE
Q 011374 287 ----NKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERI 360 (487)
Q Consensus 287 ----~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~i 360 (487)
...+..+|..+ ..|+|+|+||||.+...+.... .......++.++..|||.... ..++
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~--------------~~~~~~~~~~~l~~Lsgg~~~--~~~i 148 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE--------------TGASVRVVNQLLTEMDGLEAR--QQVF 148 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------------------CTTHHHHHHHHHHTCCST--TCEE
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc--------------chHHHHHHHHHHHhhhccccc--CCEE
Confidence 34577778764 4689999999998764322110 112345678999999998543 4588
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC-CCCc--hHHHHHHHhh---cCCCHHHHHHHHh
Q 011374 361 IIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT-EHPL--FLEVEELIEK---VEVTPADVAEQLM 433 (487)
Q Consensus 361 iI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~-~~~l--~~~i~~l~~~---~~~spa~i~~~l~ 433 (487)
++++||+|+.||||++||||||.+|++++|+.++|++|++.++... ..++ ..++..+... .++|+|||..+|.
T Consensus 149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~ 227 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR 227 (274)
T ss_dssp EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH
T ss_pred EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988542 1222 2345666654 3799999999884
No 11
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=1.2e-27 Score=236.38 Aligned_cols=214 Identities=26% Similarity=0.304 Sum_probs=172.4
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc-
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE- 285 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~- 285 (487)
..++.+|++++|.+++++.|.+.+..++..++.|..+|...++++|||||||||||++|+++|+.++.+++.+++..+.
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 3456689999999999999999999999999999999999999999999999999999999999999999999887762
Q ss_pred -----ChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCc
Q 011374 286 -----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDE 358 (487)
Q Consensus 286 -----~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~ 358 (487)
....+..+|..+ ..++||||||||.+...+..... .+.......+..+++.++++... .+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~-----------~~~~~~~~~l~~ll~~~~~~~~~--~~ 156 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALT-----------GGDREVQRTLMQLLAEMDGFDAR--GD 156 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCC-----------GGGGHHHHHHHHHHHHHHTTCSS--SS
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccC-----------CccHHHHHHHHHHHHHhhCCCCC--CC
Confidence 234566666554 45799999999998642211000 00122356778888888887543 46
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 359 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 359 ~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
++||+|||.++.+|++++|+|||+..++++.|+.+++.+|++.++.........++..+.... ++++++|..++.
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~ 232 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICT 232 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHH
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999998755433334566666644 589999988764
No 12
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=241.14 Aligned_cols=207 Identities=23% Similarity=0.293 Sum_probs=170.4
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-CCcEEEeecCcc---
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELSSV--- 284 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-~~~v~~l~~~~~--- 284 (487)
++.+|++|+|.+++|+.|.+.+..+++.++.|.. +..+++|+|||||||||||+||+++|+++ +.+++.++++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 4568999999999999999999999999988874 35677999999999999999999999999 899999998776
Q ss_pred ---cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCce
Q 011374 285 ---EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDER 359 (487)
Q Consensus 285 ---~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ 359 (487)
.....++.+|..+ ..++||||||||.+...+.... .......++.||..+||+... ...+
T Consensus 86 ~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~--------------~~~~~~~~~~ll~~ld~~~~~-~~~v 150 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE--------------SEAARRIKTEFLVQMQGVGVD-NDGI 150 (322)
T ss_dssp SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC--------------TTHHHHHHHHHHHHHHCSSSC-CTTE
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc--------------chHHHHHHHHHHHHHhccccc-CCCE
Confidence 2456778888665 5689999999999865321100 122356788999999998532 3568
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc-hHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 360 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL-FLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 360 iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
+||+|||+++.||++++| ||+.+++++.|+.+++..|++.++......+ ..++..+.... ++|++||..+|.
T Consensus 151 ~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999997655443 44666777654 599999998874
No 13
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=1.6e-27 Score=252.41 Aligned_cols=211 Identities=27% Similarity=0.357 Sum_probs=168.5
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc---
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE--- 285 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~--- 285 (487)
.+.+|++|+|.++.|+++.+.+. ++..+..|..+|...++|+||+||||||||+||+++|++++.+++.++++++.
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 34589999999999999987664 67888999999999999999999999999999999999999999999988762
Q ss_pred ---ChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceE
Q 011374 286 ---GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERI 360 (487)
Q Consensus 286 ---~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~i 360 (487)
+...++.+|..+ ..|+||||||||.+...++..... ++.....+++.||..||++... .+++
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g-----------~~~~~~~~l~~LL~~ld~~~~~--~~vi 156 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG-----------GHDEREQTLNQLLVEMDGFDSK--EGII 156 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC--------------------CHHHHHHHHHHHHHHHSCGG--GTEE
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCc-----------CcHHHHHHHHHHHHHHhccCCC--CCEE
Confidence 345677888766 468999999999986533211000 0233457899999999988543 4599
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHHHHHHh
Q 011374 361 IIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 433 (487)
Q Consensus 361 iI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 433 (487)
||+|||+++.|||+++||||||..|.++.|+.++|++|++.++.........++..+... .+++++||.+.+.
T Consensus 157 VIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~ 230 (476)
T 2ce7_A 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVN 230 (476)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999998875432212234555554 3589999988774
No 14
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=3.4e-27 Score=229.81 Aligned_cols=211 Identities=25% Similarity=0.341 Sum_probs=155.4
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc----
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE---- 285 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~---- 285 (487)
+.+|++++|.+++|+.|.+.+. ++..++.|...|...++++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 4689999999999999987665 57888899999999999999999999999999999999999999999988763
Q ss_pred --ChHHHHHHHHHcc--CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEE
Q 011374 286 --GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERII 361 (487)
Q Consensus 286 --~~~~l~~l~~~~~--~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ii 361 (487)
....++.+|..+. .++||||||||.+...+....... ........+..|++.+++... ...++|
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~----------~~~~~~~~l~~ll~~~~~~~~--~~~~~v 148 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF----------SNTEEEQTLNQLLVEMDGMGT--TDHVIV 148 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-----------------------------CHHHHHHHHHHHTCCT--TCCEEE
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCc----------cchhHHHHHHHHHHHhhCcCC--CCCEEE
Confidence 2355667776653 589999999999865332211000 012345678899999998743 346899
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHH--HHHHhh-cCCCHHHHHHHHh
Q 011374 362 IFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEV--EELIEK-VEVTPADVAEQLM 433 (487)
Q Consensus 362 I~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i--~~l~~~-~~~spa~i~~~l~ 433 (487)
|+|||.++.||++++|||||+..++++.|+.+++.+|++.++.........++ ..+... ..+++++|...+.
T Consensus 149 i~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 149 LASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp EEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876554444332 444444 3589999987774
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.95 E-value=2.4e-27 Score=239.58 Aligned_cols=209 Identities=22% Similarity=0.261 Sum_probs=171.0
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc--
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV-- 284 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~-- 284 (487)
..++.+|++++|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++.+
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 456679999999999999999999999998888876 55667899999999999999999999999999999998765
Q ss_pred ----cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCc
Q 011374 285 ----EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDE 358 (487)
Q Consensus 285 ----~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~ 358 (487)
.....++.+|..+ ..++||||||||.+...+.... ..........|+..+|++... ...
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~--------------~~~~~~~~~~ll~~l~~~~~~-~~~ 154 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE--------------SEASRRIKTELLVQMNGVGND-SQG 154 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------------------CCTHHHHHHHHHHHGGGGTS-CCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCc--------------chHHHHHHHHHHHHhcccccc-CCc
Confidence 2345677777655 4679999999999875332111 234567889999999998543 346
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc-hHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 359 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL-FLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 359 ~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
++||+|||+++.||++++| ||+..|+++.|+.+++..|++.++......+ ...+..+.... ++++++|..++.
T Consensus 155 v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 8999999999999999999 9999999999999999999999998665554 44666666654 499999998874
No 16
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=8.2e-27 Score=227.57 Aligned_cols=213 Identities=23% Similarity=0.340 Sum_probs=162.1
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc-
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE- 285 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~- 285 (487)
...+.+|++++|.+++|+.+.+.+ .++..+..|+.+|...++|+||+||||||||++++++|+.++.+++.++++.+.
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 345679999999999999998765 467788888899999999999999999999999999999999999999987762
Q ss_pred -----ChHHHHHHHHHcc--CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCc
Q 011374 286 -----GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDE 358 (487)
Q Consensus 286 -----~~~~l~~l~~~~~--~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~ 358 (487)
....++.+|..+. .++|+||||||.+...+.... . .+.......+..+|..+|++... ..
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~--~---------~~~~~~~~~~~~ll~~l~~~~~~--~~ 150 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL--G---------GGHDEREQTLNQMLVEMDGFEGN--EG 150 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTS--C---------CTTCHHHHHHHHHHHHHHTCCSS--SC
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCc--C---------CCchHHHHHHHHHHHHhhCcccC--CC
Confidence 3466778887663 478999999998864221100 0 00122246788999999998543 45
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 359 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 359 ~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
++||+|||+++.+|++++|||||+..++++.|+.+++.+|++.++..........+..+.... +++++|+...+.
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 226 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988643222122233344443 479999987763
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.94 E-value=1.2e-26 Score=237.98 Aligned_cols=208 Identities=22% Similarity=0.269 Sum_probs=167.4
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc---
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV--- 284 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~--- 284 (487)
.++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.+++..+
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 34678999999999999999999999999888876 56778899999999999999999999999999999988765
Q ss_pred ---cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCce
Q 011374 285 ---EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDER 359 (487)
Q Consensus 285 ---~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ 359 (487)
.....++.+|..+ ..++||||||||.+...+.... ........+.||..||++... ...+
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~--------------~~~~~~~~~~ll~~l~~~~~~-~~~v 188 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE--------------SEASRRIKTELLVQMNGVGND-SQGV 188 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------------------CTHHHHHHHHHHHHHHHCC----CCE
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCc--------------chHHHHHHHHHHHHhhccccc-CCCe
Confidence 2456677777665 4689999999999865322111 223456788999999988542 3468
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc-hHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 360 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL-FLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 360 iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
+||+|||+++.||++++| ||+..++++.|+.+++..|++.++......+ ..++..+.... ++++++|..+|.
T Consensus 189 ~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999998655443 44566676654 489999998873
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.94 E-value=3.4e-26 Score=243.67 Aligned_cols=209 Identities=23% Similarity=0.330 Sum_probs=173.6
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc---
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE--- 285 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~--- 285 (487)
.+.+|++++|...+++.|.+.+..++..++.|..+|..+++++|||||||||||++|+++|++++.+++.+++..+.
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999987752
Q ss_pred ---ChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceE
Q 011374 286 ---GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERI 360 (487)
Q Consensus 286 ---~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~i 360 (487)
....++.+|..+ ..++||||||||.+...+.... ......+++.||..||++... ..++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~--------------~~~~~~~~~~LL~~ld~~~~~--~~v~ 342 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--------------GEVERRIVSQLLTLMDGLKQR--AHVI 342 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC--------------CHHHHHHHHHHHHHHHHSCTT--SCEE
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc--------------chHHHHHHHHHHHHhhccccC--CceE
Confidence 245677778765 4579999999999875321100 122357888999999988543 4589
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHHHHHHh
Q 011374 361 IIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 433 (487)
Q Consensus 361 iI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 433 (487)
||+|||+++.||+++.|+|||+..|+++.|+.+++.++++.++.........++..+... .+++++++..++.
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999998875433333345666654 4599999988773
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.93 E-value=6.7e-26 Score=239.05 Aligned_cols=208 Identities=22% Similarity=0.271 Sum_probs=167.1
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-CCcEEEeecCccc-
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELSSVE- 285 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-~~~v~~l~~~~~~- 285 (487)
.++.+|++|+|.+++|+.|.+.+..++..+..|.. +..+++|+|||||||||||+||+++|+++ +.+++.++++.+.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 45679999999999999999999999998887764 35667999999999999999999999999 8999999988762
Q ss_pred -----ChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCc
Q 011374 286 -----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDE 358 (487)
Q Consensus 286 -----~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~ 358 (487)
....++.+|..+ ..++||||||||.+...+.... .......++.||..||++... ...
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~--------------~~~~~~~~~~lL~~l~~~~~~-~~~ 271 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE--------------SEAARRIKTEFLVQMQGVGVD-NDG 271 (444)
T ss_dssp -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC--------------CGGGHHHHHHHHTTTTCSSCC-CSS
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc--------------ccHHHHHHHHHHHHHhCcccC-CCC
Confidence 345567777654 4689999999999864221100 223457788999999997532 356
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc-hHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 359 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL-FLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 359 ~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
++||+|||+++.||++|+| ||+..++++.|+.+++..|++.++......+ ...+..++... ++|+++|..++.
T Consensus 272 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 8999999999999999999 9999999999999999999999997654433 34566666654 589999998874
No 20
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=8.6e-27 Score=228.48 Aligned_cols=212 Identities=26% Similarity=0.375 Sum_probs=160.1
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc---
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE--- 285 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~--- 285 (487)
++.+|++++|.+++++.+.+.+. ++..++.|..+|...++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 45689999999999999988665 68889999999999999999999999999999999999999999998877652
Q ss_pred ---ChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceE
Q 011374 286 ---GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERI 360 (487)
Q Consensus 286 ---~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~i 360 (487)
....++.+|..+ ..++||||||+|.+...+...+... ........++.|++.+|+.... ...++
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~----------~~~~~~~~~~~ll~~l~~~~~~-~~~v~ 153 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVS----------GNDEREQTLNQLLAEMDGFGSE-NAPVI 153 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC--------------------CCCSCSSTTTTTTTTTCSSCS-CSCCE
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCC----------CchhHHHHHHHHHHHhhCcccC-CCCEE
Confidence 223344555544 3579999999999865322111000 0233455678899999987532 34589
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHHHHHH
Q 011374 361 IIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQL 432 (487)
Q Consensus 361 iI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l 432 (487)
||+|||.++.||++++|+|||+..++++.|+.+++.++++.++..........+..+... .++++++|.+.+
T Consensus 154 vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~ 226 (268)
T 2r62_A 154 VLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANII 226 (268)
T ss_dssp EEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHH
T ss_pred EEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999998864322211223333333 247888887765
No 21
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=6.5e-25 Score=213.72 Aligned_cols=218 Identities=26% Similarity=0.330 Sum_probs=161.1
Q ss_pred ceecccCC-CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 202 WQSVNLDH-PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 202 w~~~~~~~-p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
|.++.... +.+|++++|.++.++++.+... ++..+..+..++...++|++|+||||||||+|++++|+.++.+++.++
T Consensus 3 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 3 LGSVLTEAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp -----CCCCSCCGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred ccccccCCCCCCHHHhCCcHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 34433333 4699999999999999876554 567788899999999999999999999999999999999999999888
Q ss_pred cCccc------ChHHHHHHHHHcc--CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc
Q 011374 281 LSSVE------GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW 352 (487)
Q Consensus 281 ~~~~~------~~~~l~~l~~~~~--~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~ 352 (487)
...+. ....+..+|.... .+++++|||||.+...+....... .......++.+++.++|..
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~-----------~~~~~~~~~~ll~~l~g~~ 150 (254)
T 1ixz_A 82 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG-----------NDEREQTLNQLLVEMDGFE 150 (254)
T ss_dssp HHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC--------------------CHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccccc-----------chHHHHHHHHHHHHHhCCC
Confidence 65541 2345667777653 579999999998864322100000 1122456788999999875
Q ss_pred cCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHH
Q 011374 353 SSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQ 431 (487)
Q Consensus 353 s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~ 431 (487)
. ....+++++||+|+.||++++|+|||+.+|+++.|+.++|.+|++.++.........++..+.... +++++|+.+.
T Consensus 151 ~--~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~ 228 (254)
T 1ixz_A 151 K--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENL 228 (254)
T ss_dssp T--TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHH
T ss_pred C--CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHH
Confidence 3 234788999999999999999999999999999999999999999887533222122344555543 5888999887
Q ss_pred Hh
Q 011374 432 LM 433 (487)
Q Consensus 432 l~ 433 (487)
+.
T Consensus 229 ~~ 230 (254)
T 1ixz_A 229 LN 230 (254)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.93 E-value=4.4e-25 Score=228.74 Aligned_cols=210 Identities=24% Similarity=0.304 Sum_probs=167.1
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc-
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE- 285 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~- 285 (487)
..+|.+|++++|.+.+++.|.+.+..++..++.|...+. +++++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 457789999999999999999999999988888887774 478999999999999999999999999999999998863
Q ss_pred -----ChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCc
Q 011374 286 -----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDE 358 (487)
Q Consensus 286 -----~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~ 358 (487)
....++.+|..+ ..++||||||||.++..+.... .......+..|+..++|+....+..
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~--------------~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGE--------------HDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------------------CTHHHHHHHHHHHHHHHC-----C
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCcc--------------chHHHHHHHHHHHHhhcccccCCCC
Confidence 345566677654 4579999999999975332111 2334677889999999987655567
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchH-HHHHHHhh-cCCCHHHHHHHHh
Q 011374 359 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFL-EVEELIEK-VEVTPADVAEQLM 433 (487)
Q Consensus 359 ~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~-~i~~l~~~-~~~spa~i~~~l~ 433 (487)
++||+|||+++.||++++| ||+.+|+++.|+.+++..+++.++......+.+ .+..+... ..+++++|..++.
T Consensus 253 v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp EEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 8999999999999999999 999999999999999999999999876666544 55555554 3589999987764
No 23
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.93 E-value=2.2e-25 Score=237.29 Aligned_cols=211 Identities=25% Similarity=0.320 Sum_probs=165.3
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccC--
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG-- 286 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~-- 286 (487)
++.+|++|+|.+++|+++.+.+ .++..+..|..+|...++|+||+||||||||+|+++||++++.+++.++++.+..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv-~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHH-HHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHH-HHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 5679999999999999997755 4677888899999999999999999999999999999999999999999877632
Q ss_pred ----hHHHHHHHHHcc--CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceE
Q 011374 287 ----NKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERI 360 (487)
Q Consensus 287 ----~~~l~~l~~~~~--~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~i 360 (487)
...++.+|..+. .++|+||||||.+...+.... . .+......+++.||..|||.... ..++
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~--~---------~~~~e~~~~l~~LL~~Ldg~~~~--~~vi 171 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV--G---------GGNDEREQTLNQLLVEMDGFEKD--TAIV 171 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSST--T---------TSSHHHHHHHHHHHHHGGGCCSS--CCCE
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCc--C---------CCcHHHHHHHHHHHHHhcccccC--ccEE
Confidence 345677777664 479999999998854221100 0 00112246789999999997543 4589
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 361 IIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 361 iI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
++++||+|+.|||+++||||||.+|+++.|+.++|++|++.++.........++..+.... +++++|+.+.+.
T Consensus 172 viAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~ 245 (499)
T 2dhr_A 172 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 245 (499)
T ss_dssp EEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHH
T ss_pred EEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887643222122344444443 588999988874
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.92 E-value=5.5e-25 Score=225.63 Aligned_cols=208 Identities=20% Similarity=0.314 Sum_probs=165.3
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccC--
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG-- 286 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~-- 286 (487)
+|.+|++++|.+++++.|.+.+..++..++.|...+ ..++++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 567899999999999999999999888888877665 56789999999999999999999999999999999887632
Q ss_pred ----hHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceE
Q 011374 287 ----NKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERI 360 (487)
Q Consensus 287 ----~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~i 360 (487)
...++.+|..+ ..++||||||||.+...+.... .......++.||..++|.....+..++
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~--------------~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE--------------HESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------------------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc--------------chHHHHHHHHHHHHHhcccccCCCCEE
Confidence 34556666554 4589999999999865322110 223456788999999998655456789
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc-hHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 361 IIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL-FLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 361 iI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
||+|||.++.||++++| ||+..++++.|+.+++..+++.++......+ ...+..+.... +++++++..++.
T Consensus 224 vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999887555444 34566666654 589999988774
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.92 E-value=1.9e-24 Score=215.00 Aligned_cols=209 Identities=22% Similarity=0.307 Sum_probs=163.4
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc--
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-- 285 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~-- 285 (487)
.++.+|++++|.+++++.+.+.+.....+++.|..++ .+++++||+||||||||++|+++|+.++.+++.++++.+.
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 3567999999999999999999998888888877665 4578999999999999999999999999999999988763
Q ss_pred ----ChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccC-CCCc
Q 011374 286 ----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSS-CGDE 358 (487)
Q Consensus 286 ----~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~-~~~~ 358 (487)
....++.+|..+ ..++||||||||.+...+.... ........+.||..+|+.... .+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--------------~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE--------------HEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------------------CCSHHHHHHHHHHHHHCC------C
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc--------------chHHHHHHHHHHHHHhcccccCCCCc
Confidence 234455666544 4689999999999875332111 223456778899999987542 2345
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchH-HHHHHHhh-cCCCHHHHHHHHh
Q 011374 359 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFL-EVEELIEK-VEVTPADVAEQLM 433 (487)
Q Consensus 359 ~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~-~i~~l~~~-~~~spa~i~~~l~ 433 (487)
++||+|||.++.||++++| ||+..++++.|+.+++..+++.++......+.+ .+..+... .+++++++..++.
T Consensus 160 v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp EEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 8899999999999999999 999999999999999999999988765554433 45555554 4589999987764
No 26
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=8.4e-25 Score=218.34 Aligned_cols=164 Identities=18% Similarity=0.158 Sum_probs=118.3
Q ss_pred HhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc------ChHHHHHHHHHc------cCCeEEEEeccc
Q 011374 242 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE------GNKDLRQILIAT------ENKSILVVEDID 309 (487)
Q Consensus 242 ~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~------~~~~l~~l~~~~------~~~sIl~IDeiD 309 (487)
..+..+|+|+|||||||||||+||+++|++++.+++.++++.+. ....++.+|..+ ..++||||||||
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 34677889999999999999999999999999999999987762 345567777665 268999999999
Q ss_pred hhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcccc---------CCCCceEEEEecCCCCCCCccccCCCc
Q 011374 310 CCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWS---------SCGDERIIIFTTNHKDRLDPALLRPGR 380 (487)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s---------~~~~~~iiI~TTN~~~~LD~ALlRpGR 380 (487)
.+......... . ........+.|++.||+... ....+++||+|||+++.||++|+||||
T Consensus 110 ~~~~~~~~~~~-~-----------~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R 177 (293)
T 3t15_A 110 AGAGRMGGTTQ-Y-----------TVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGR 177 (293)
T ss_dssp --------------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHH
T ss_pred hhcCCCCCCcc-c-----------cchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCC
Confidence 98752211100 0 12345677999999986531 123458999999999999999999999
Q ss_pred eeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh
Q 011374 381 MDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK 420 (487)
Q Consensus 381 fd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~ 420 (487)
||.+|++ |+.+++.+|++.++...... ...+..+...
T Consensus 178 ~d~~i~~--P~~~~r~~Il~~~~~~~~~~-~~~l~~~~~~ 214 (293)
T 3t15_A 178 MEKFYWA--PTREDRIGVCTGIFRTDNVP-AEDVVKIVDN 214 (293)
T ss_dssp EEEEEEC--CCHHHHHHHHHHHHGGGCCC-HHHHHHHHHH
T ss_pred CceeEeC--cCHHHHHHHHHHhccCCCCC-HHHHHHHhCC
Confidence 9999974 69999999999988754332 4455555543
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=1.5e-23 Score=207.25 Aligned_cols=212 Identities=25% Similarity=0.330 Sum_probs=159.7
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc--
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-- 285 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~-- 285 (487)
.++.+|++++|.+++++++.+.. .++..+..+..++...++|++|+||||||||+|++++|+.++..++.++...+.
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~-~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHH-HHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCChHHHHHHHHHHH-HHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 35679999999999999987655 456777889999999999999999999999999999999999999988865541
Q ss_pred ----ChHHHHHHHHHcc--CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCce
Q 011374 286 ----GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDER 359 (487)
Q Consensus 286 ----~~~~l~~l~~~~~--~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ 359 (487)
....+..+|.... .++++|+||||.+...+....... .......+..+++.++|... ....
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~-----------~~~~~~~~~~ll~~lsgg~~--~~~~ 179 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG-----------NDEREQTLNQLLVEMDGFEK--DTAI 179 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC-------------------CHHHHHHHHHHHHHHTTCCT--TCCE
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCc-----------chHHHHHHHHHHHHHhCCCC--CCCE
Confidence 2345667777653 579999999998754221100000 11124567888999998643 2347
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 360 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 360 iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
+++++||+|+.||++++|+|||+.+|+++.|+.+++.+|++.++.........++..+.... .++++||...+.
T Consensus 180 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~ 254 (278)
T 1iy2_A 180 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 254 (278)
T ss_dssp EEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 88999999999999999999999999999999999999999887543222122344444443 478888877763
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.91 E-value=8.5e-27 Score=262.24 Aligned_cols=212 Identities=22% Similarity=0.319 Sum_probs=166.7
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~---- 284 (487)
+..+|++++|.+++|+.|.+.+..++..+..|..+|..+++++|||||||||||+||+++|+.++.+++.++++.+
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~ 551 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCC
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhh
Confidence 3458999999999999999988888888888888899999999999999999999999999999999999988876
Q ss_pred --cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceE
Q 011374 285 --EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERI 360 (487)
Q Consensus 285 --~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~i 360 (487)
.....++.+|..+ ..|+||||||||.+...+....... ......+++.||+.||++... ..++
T Consensus 552 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~-----------~~~~~~v~~~LL~~ld~~~~~--~~v~ 618 (806)
T 1ypw_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG-----------GGAADRVINQILTEMDGMSTK--KNVF 618 (806)
T ss_dssp TTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHH-----------HHHHHHHHHHHHTTCC--------CCB
T ss_pred cCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCc-----------chhHHHHHHHHHHHHhccccc--CCeE
Confidence 3457788888775 4589999999999875432110000 122467889999999998654 4689
Q ss_pred EEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHHHHHHh
Q 011374 361 IIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 433 (487)
Q Consensus 361 iI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 433 (487)
||+|||+++.||||++|||||+.+|++++|+.+++..|++.++.........++..+... ..+|+++|..++.
T Consensus 619 vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~ 692 (806)
T 1ypw_A 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp CCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHH
T ss_pred EEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999865322212233334443 3599999998874
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=2.6e-22 Score=225.79 Aligned_cols=207 Identities=23% Similarity=0.332 Sum_probs=169.6
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc----
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE---- 285 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~---- 285 (487)
+.+|++|+|.+++++.|.+.+..++.+++.|..++..+++++||+||||||||+|++++|+.++.+++.+++..+.
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~ 279 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSST
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhh
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999876652
Q ss_pred --ChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEE
Q 011374 286 --GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERII 361 (487)
Q Consensus 286 --~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~ii 361 (487)
....++.+|... ..++|+||||||.++..+.... .......+..|+..++|+... ..+++
T Consensus 280 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~--------------~~~~~~~~~~Ll~ll~g~~~~--~~v~v 343 (806)
T 1ypw_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--------------GEVERRIVSQLLTLMDGLKQR--AHVIV 343 (806)
T ss_dssp THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC--------------SHHHHHHHHHHHHHHHSSCTT--SCCEE
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc--------------chHHHHHHHHHHHHhhhhccc--ccEEE
Confidence 235667777665 4589999999999875321100 112356778899999998654 45899
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh-cCCCHHHHHHHH
Q 011374 362 IFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQL 432 (487)
Q Consensus 362 I~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l 432 (487)
|+|||+++.+|+++.|+|||+..+.++.|+.+++.++++.++.........++..+... ..++++++...+
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~ 415 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHH
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHH
Confidence 99999999999999999999999999999999999999988764432222345555554 458999987765
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.82 E-value=5.3e-19 Score=178.76 Aligned_cols=196 Identities=17% Similarity=0.180 Sum_probs=147.7
Q ss_pred CCceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
..|.. ...|.+|++++|.+..++.+...+...... .....++||+||||||||++|+++|+.++.+++.+
T Consensus 17 ~~~~~--~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 17 ETYET--SLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred hhhhh--ccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 35654 457889999999999999988877654321 23456899999999999999999999999999999
Q ss_pred ecCcccChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcccc------
Q 011374 280 ELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWS------ 353 (487)
Q Consensus 280 ~~~~~~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s------ 353 (487)
++..+.....+...+.....+++|||||||.+. ......|+..++....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~-------------------------~~~~~~Ll~~l~~~~~~~~~~~ 141 (338)
T 3pfi_A 87 AAPMIEKSGDLAAILTNLSEGDILFIDEIHRLS-------------------------PAIEEVLYPAMEDYRLDIIIGS 141 (338)
T ss_dssp EGGGCCSHHHHHHHHHTCCTTCEEEEETGGGCC-------------------------HHHHHHHHHHHHTSCC------
T ss_pred cchhccchhHHHHHHHhccCCCEEEEechhhcC-------------------------HHHHHHHHHHHHhccchhhccc
Confidence 999888888899999888899999999999773 2334556666654310
Q ss_pred --------CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHH-HHHHHhhcCCC
Q 011374 354 --------SCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE-VEELIEKVEVT 424 (487)
Q Consensus 354 --------~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~-i~~l~~~~~~s 424 (487)
.....+++|++||....++++|++ ||+.+++|+.|+.+++..+++.++......+.++ +..+......+
T Consensus 142 ~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~ 219 (338)
T 3pfi_A 142 GPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRST 219 (338)
T ss_dssp ---CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTC
T ss_pred CccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcC
Confidence 000137899999999999999999 9999999999999999999998886555444443 33344444456
Q ss_pred HHHHHHHH
Q 011374 425 PADVAEQL 432 (487)
Q Consensus 425 pa~i~~~l 432 (487)
+.++.+.+
T Consensus 220 ~r~l~~~l 227 (338)
T 3pfi_A 220 PRIALRLL 227 (338)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.80 E-value=2e-20 Score=197.77 Aligned_cols=174 Identities=15% Similarity=0.071 Sum_probs=118.1
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC--CcEEEeecCccc--
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN--FDVYDLELSSVE-- 285 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~--~~v~~l~~~~~~-- 285 (487)
...|++++|.+++|+.+...+..+ +.|..+++|+|||||||||||++|+++|++++ .+++.++++.+.
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 347899999999999887766432 23667789999999999999999999999999 999999988762
Q ss_pred ---ChHHHHHHHHHc-----cCCeEEEEeccchhhhhhhHHHhhhcccchhhhh------cccCCchhhHhhHHHHhhcc
Q 011374 286 ---GNKDLRQILIAT-----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRS------ACNQGNRVTLSGLLNFIDGL 351 (487)
Q Consensus 286 ---~~~~l~~l~~~~-----~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ls~LL~~lDgl 351 (487)
....++++|..+ ..|+||||||||.++..+.......... ..... ............++..++..
T Consensus 105 ~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 105 EIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGK-TISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC---------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcch-HHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 223488888776 4689999999999986443221100000 00000 00001112233455555532
Q ss_pred ccCCCCceEEEEecCCCCCCCccccCCCceee--EEEeCCCCH
Q 011374 352 WSSCGDERIIIFTTNHKDRLDPALLRPGRMDV--HIHMSYCTP 392 (487)
Q Consensus 352 ~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~--~I~~~~p~~ 392 (487)
....++.++|++|||+++.+|+++.||||||. .+++|.|+.
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 22334445666899999999999999999999 667777754
No 32
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.79 E-value=3.2e-18 Score=171.49 Aligned_cols=191 Identities=21% Similarity=0.206 Sum_probs=147.6
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccCh
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGN 287 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~ 287 (487)
..|.+|++++|.+..++.+...+...... ...+.++||+||||||||++|+++|+.++.+++.+++..+...
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 77 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKAR--------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHH--------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHcc--------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh
Confidence 46789999999999999888777644321 1345789999999999999999999999999999999988878
Q ss_pred HHHHHHHHH-ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcccc-----C-------
Q 011374 288 KDLRQILIA-TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWS-----S------- 354 (487)
Q Consensus 288 ~~l~~l~~~-~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s-----~------- 354 (487)
..+...+.. ...+++|||||||.+.. .....|+..++.... .
T Consensus 78 ~~l~~~l~~~~~~~~~l~lDEi~~l~~-------------------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~ 132 (324)
T 1hqc_A 78 GDLAAILANSLEEGDILFIDEIHRLSR-------------------------QAEEHLYPAMEDFVMDIVIGQGPAARTI 132 (324)
T ss_dssp HHHHHHHTTTCCTTCEEEETTTTSCCH-------------------------HHHHHHHHHHHHSEEEECCSSSSSCCCE
T ss_pred HHHHHHHHHhccCCCEEEEECCccccc-------------------------chHHHHHHHHHhhhhHHhcccccccccc
Confidence 888888776 57789999999997732 223445555553210 0
Q ss_pred --CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHH-HHHHHhhcCCCHHHHHHH
Q 011374 355 --CGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE-VEELIEKVEVTPADVAEQ 431 (487)
Q Consensus 355 --~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~-i~~l~~~~~~spa~i~~~ 431 (487)
....+++|++||.++.++++|.+ ||+.++.++.|+.+++..++..++......+.++ ++.+.....-.|.++.+.
T Consensus 133 ~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~ 210 (324)
T 1hqc_A 133 RLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRL 210 (324)
T ss_dssp EEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHH
T ss_pred ccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHH
Confidence 01246899999999999999998 9988999999999999999999886655555443 445555556788887776
Q ss_pred Hh
Q 011374 432 LM 433 (487)
Q Consensus 432 l~ 433 (487)
+.
T Consensus 211 l~ 212 (324)
T 1hqc_A 211 FR 212 (324)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.79 E-value=6.5e-19 Score=175.55 Aligned_cols=180 Identities=17% Similarity=0.226 Sum_probs=137.2
Q ss_pred cc-ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCc---ccceeeCCCCCcHHHHHHHHHHHcC-------CcEEEeec
Q 011374 213 FD-TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWK---RGYLLYGPPGTGKSSLIAAMANYLN-------FDVYDLEL 281 (487)
Q Consensus 213 fd-~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~---rg~LL~GPPGtGKTsLa~alA~~l~-------~~v~~l~~ 281 (487)
++ +++|.+++|+.|.+.+..+. .+..+.+.|...+ .++||+||||||||++|+++|+.++ .+++.+++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 44 69999999999998887655 3666777776544 4599999999999999999999983 38888888
Q ss_pred Cccc------ChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCC
Q 011374 282 SSVE------GNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSC 355 (487)
Q Consensus 282 ~~~~------~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~ 355 (487)
+.+. ....+..+|... .++||||||+|.+...++. .......+..|++.++..
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~----------------~~~~~~~~~~Ll~~l~~~---- 166 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYRPDNE----------------RDYGQEAIEILLQVMENN---- 166 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCCCC-------------------CCTHHHHHHHHHHHHHC----
T ss_pred HHhhhhcccccHHHHHHHHHhc-CCCEEEEEChhhhccCCCc----------------ccccHHHHHHHHHHHhcC----
Confidence 7762 234556666655 5789999999988642110 133467788899999863
Q ss_pred CCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHH
Q 011374 356 GDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEE 416 (487)
Q Consensus 356 ~~~~iiI~TTN~~~-----~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ 416 (487)
...+++|+|||.++ .++|+|++ ||+.+|+|+.|+.+++..+++.++......+.++...
T Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~ 230 (309)
T 3syl_A 167 RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAET 230 (309)
T ss_dssp TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHH
T ss_pred CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 24578889998653 36899999 9999999999999999999999987655555444433
No 34
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.77 E-value=9.1e-20 Score=190.75 Aligned_cols=162 Identities=14% Similarity=0.169 Sum_probs=73.2
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhcC-CCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc--------
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-------- 285 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~-~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~-------- 285 (487)
.|+|+++.|+.|...+...+++...+..++. .+++++||+||||||||++|+++|+.++.+++.++++.+.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 6899999999999888776666554444433 3678999999999999999999999999999999986542
Q ss_pred ChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEe-
Q 011374 286 GNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFT- 364 (487)
Q Consensus 286 ~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~T- 364 (487)
....++.+|..+.. ++++||+|.+.+... ......+++.||+.|||+.+.. .+ +++
T Consensus 96 ~e~~lr~lf~~a~~--~~~~De~d~~~~~~~-----------------~~~e~rvl~~LL~~~dg~~~~~---~v-~a~~ 152 (444)
T 1g41_A 96 VDSIIRDLTDSAMK--LVRQQEIAKNRARAE-----------------DVAEERILDALLPPAKNQWGEV---EN-HDSH 152 (444)
T ss_dssp THHHHHHHHHHHHH--HHHHHHHHSCC-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHh--cchhhhhhhhhccch-----------------hhHHHHHHHHHHHHhhcccccc---cc-cccc
Confidence 34566777665432 345788776532110 2345788999999999996532 23 454
Q ss_pred cCCCCCCCccccCCCceeeEEEeCCCCHH-HHHHHH
Q 011374 365 TNHKDRLDPALLRPGRMDVHIHMSYCTPC-GFKMLA 399 (487)
Q Consensus 365 TN~~~~LD~ALlRpGRfd~~I~~~~p~~~-~~~~l~ 399 (487)
||+++.||+||+||||||.+|+++.|+.. .+.+++
T Consensus 153 TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 153 SSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ------------------------------------
T ss_pred ccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 99999999999999999999999999987 444443
No 35
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.75 E-value=6.6e-17 Score=151.21 Aligned_cols=158 Identities=17% Similarity=0.173 Sum_probs=119.5
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-----CCcEEEeec
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLEL 281 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-----~~~v~~l~~ 281 (487)
...|.+|++++|.++.++.+.+.+. . ....++||+||||||||++++++|+.+ ...++.+++
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~----~---------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVE----R---------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHH----T---------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHh----C---------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 4578899999999988887766553 1 122359999999999999999999986 456788888
Q ss_pred CcccChHHHHHHHHHc--------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcccc
Q 011374 282 SSVEGNKDLRQILIAT--------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWS 353 (487)
Q Consensus 282 ~~~~~~~~l~~l~~~~--------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s 353 (487)
+.......+...+... ..+.||+|||+|.+.. .....|+..++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-------------------------~~~~~l~~~l~~~-- 129 (226)
T 2chg_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-------------------------DAQAALRRTMEMY-- 129 (226)
T ss_dssp TCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-------------------------HHHHHHHHHHHHT--
T ss_pred ccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-------------------------HHHHHHHHHHHhc--
Confidence 7765555555544332 4578999999997732 2244566666653
Q ss_pred CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCC
Q 011374 354 SCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHP 409 (487)
Q Consensus 354 ~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~ 409 (487)
.....+|+|||.++.+++++.+ |+. .++++.++.++...++..++...+..
T Consensus 130 --~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (226)
T 2chg_A 130 --SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVK 180 (226)
T ss_dssp --TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred --CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 2457889999999999999999 887 89999999999999998877543333
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.75 E-value=2.3e-17 Score=163.75 Aligned_cols=218 Identities=15% Similarity=0.232 Sum_probs=141.6
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHh-cCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccC-------
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG------- 286 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~-g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~------- 286 (487)
.++|.+++++.+...+...+......... +...+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 48999999999988887644332111111 1234678999999999999999999999999999999877632
Q ss_pred -hHHHHHHHHHc-------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccC----
Q 011374 287 -NKDLRQILIAT-------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSS---- 354 (487)
Q Consensus 287 -~~~l~~l~~~~-------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~---- 354 (487)
...++.++... ..++||||||||.+......... ........+.|+..+++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~-------------~~~~~~~~~~Ll~~le~~~~~~~~~ 162 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGA-------------DVSREGVQRDLLPLVEGSTVSTKHG 162 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSS-------------HHHHHHHHHHHHHHHHCCEEEETTE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccccc-------------chhHHHHHHHHHHHhcCCeEecccc
Confidence 24466665533 34789999999988532100000 011123467788888864210
Q ss_pred --CCCceEEEEe----cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhh----cCCC
Q 011374 355 --CGDERIIIFT----TNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK----VEVT 424 (487)
Q Consensus 355 --~~~~~iiI~T----TN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~----~~~s 424 (487)
....+++|+| ++.+..++|+|++ ||+.+|+|+.|+.+++..+++..+. .+.......+.. ..++
T Consensus 163 ~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~----~~~~~~~~~~~~~~~~~~~~ 236 (310)
T 1ofh_A 163 MVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHA----SLTEQYKALMATEGVNIAFT 236 (310)
T ss_dssp EEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTT----CHHHHHHHHHHHTTCEEEEC
T ss_pred cccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHH----HHHHHHHHHHHhcCCeeccC
Confidence 1134678887 5678899999998 9999999999999999999985432 122222222221 2366
Q ss_pred HHHHHHHHhc---------cCCHHHHHHHHHHHHHH
Q 011374 425 PADVAEQLMR---------DEVPKIALSGLIQFLQI 451 (487)
Q Consensus 425 pa~i~~~l~~---------~~~~~~al~~l~~~l~~ 451 (487)
+..+..+... .+++..+...+...+..
T Consensus 237 ~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~ 272 (310)
T 1ofh_A 237 TDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDK 272 (310)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHh
Confidence 6555444322 35666555555555443
No 37
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.74 E-value=3e-17 Score=165.01 Aligned_cols=196 Identities=17% Similarity=0.158 Sum_probs=139.7
Q ss_pred CCceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
..|.. ...|.+|++++|.++.++.+...+. ....+..+|++||||||||++++++|+.++.+++.+
T Consensus 14 ~~~~~--k~rP~~~~~ivg~~~~~~~l~~~l~------------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 14 HILEQ--KYRPSTIDECILPAFDKETFKSITS------------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp SSHHH--HSCCCSTTTSCCCHHHHHHHHHHHH------------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred chHHH--hhCCCCHHHHhCcHHHHHHHHHHHH------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 35754 4678999999999998887776554 123456789999999999999999999999999999
Q ss_pred ecCcccChHHHHHHHHHc----c---CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc
Q 011374 280 ELSSVEGNKDLRQILIAT----E---NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW 352 (487)
Q Consensus 280 ~~~~~~~~~~l~~l~~~~----~---~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~ 352 (487)
+++... ...++..+... + .+.||||||+|.+.. ......|+..++...
T Consensus 80 ~~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~------------------------~~~~~~L~~~le~~~ 134 (324)
T 3u61_B 80 NGSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL------------------------AESQRHLRSFMEAYS 134 (324)
T ss_dssp ETTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG------------------------HHHHHHHHHHHHHHG
T ss_pred cccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc------------------------HHHHHHHHHHHHhCC
Confidence 987754 55666655432 1 578999999998741 123455777777542
Q ss_pred cCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHh--hcCCCHHHHHH
Q 011374 353 SSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE--KVEVTPADVAE 430 (487)
Q Consensus 353 s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~--~~~~spa~i~~ 430 (487)
....+|+|||++..++++|.+ |+. .++|+.|+.+++..+++.++.. +...+. ...+++.++.+
T Consensus 135 ----~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~--------l~~~~~~~~~~~~~~~~~~ 199 (324)
T 3u61_B 135 ----SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRR--------LTEICKHEGIAIADMKVVA 199 (324)
T ss_dssp ----GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHH--------HHHHHHHHTCCBSCHHHHH
T ss_pred ----CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH--------HHHHHHHcCCCCCcHHHHH
Confidence 347889999999999999999 885 6999999999988877665431 122222 23444423333
Q ss_pred HHhc--cCCHHHHHHHHHHHH
Q 011374 431 QLMR--DEVPKIALSGLIQFL 449 (487)
Q Consensus 431 ~l~~--~~~~~~al~~l~~~l 449 (487)
.+.. .+|...++..+..+.
T Consensus 200 ~l~~~~~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 200 ALVKKNFPDFRKTIGELDSYS 220 (324)
T ss_dssp HHHHHTCSCTTHHHHHHHHHG
T ss_pred HHHHhCCCCHHHHHHHHHHHh
Confidence 3332 356667776666655
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.72 E-value=8e-17 Score=158.10 Aligned_cols=167 Identities=23% Similarity=0.230 Sum_probs=116.1
Q ss_pred cccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc-------C
Q 011374 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-------G 286 (487)
Q Consensus 214 d~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~-------~ 286 (487)
+.+++..+..+.++.....+. ......+...++++||+||||||||++|+++|+.++.+++.+++.+.. .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 346666666666665432221 223334567788999999999999999999999999999999876421 1
Q ss_pred hHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEe
Q 011374 287 NKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFT 364 (487)
Q Consensus 287 ~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~T 364 (487)
...++.+|... ..++||||||||.+++.+... .......+..|+..+++... .+..++||+|
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~---------------~~~~~~~l~~L~~~~~~~~~-~~~~~~ii~t 173 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG---------------PRFSNLVLQALLVLLKKAPP-QGRKLLIIGT 173 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT---------------TBCCHHHHHHHHHHTTCCCS-TTCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC---------------hhHHHHHHHHHHHHhcCccC-CCCCEEEEEe
Confidence 24566677654 458999999999986421100 12345566777777776532 2446789999
Q ss_pred cCCCCCCCc-cccCCCceeeEEEeCCCCH-HHHHHHHHH
Q 011374 365 TNHKDRLDP-ALLRPGRMDVHIHMSYCTP-CGFKMLASN 401 (487)
Q Consensus 365 TN~~~~LD~-ALlRpGRfd~~I~~~~p~~-~~~~~l~~~ 401 (487)
||.++.+|+ .+.+ ||+..|++|.++. +++..++..
T Consensus 174 tn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 174 TSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp ESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH
T ss_pred cCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh
Confidence 999999988 5555 9999999987776 565555544
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.72 E-value=2.7e-16 Score=160.36 Aligned_cols=165 Identities=18% Similarity=0.198 Sum_probs=114.6
Q ss_pred CCCC-ccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC--cEEEeecCccc
Q 011374 209 HPAT-FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELSSVE 285 (487)
Q Consensus 209 ~p~~-fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~--~v~~l~~~~~~ 285 (487)
.|.. |++++|.+..++.+...+. .+. .|..+++++|||||||||||++|+++|+.++. +++.+++..+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~-~~~-------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLE-MIR-------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHH-HHH-------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHH-HHH-------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 4554 9999999999887654333 221 24555689999999999999999999999975 66666643310
Q ss_pred --------------------------------------------------C-----hHHHHHHHHHcc-----------C
Q 011374 286 --------------------------------------------------G-----NKDLRQILIATE-----------N 299 (487)
Q Consensus 286 --------------------------------------------------~-----~~~l~~l~~~~~-----------~ 299 (487)
. ...++..+.... .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 1 234444443321 1
Q ss_pred CeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEec-----------CCC
Q 011374 300 KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTT-----------NHK 368 (487)
Q Consensus 300 ~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TT-----------N~~ 368 (487)
|+||||||||.+. ...++.|+..++.. ...+++++|. |.+
T Consensus 190 ~~vl~IDEi~~l~-------------------------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~ 240 (368)
T 3uk6_A 190 PGVLFIDEVHMLD-------------------------IESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSP 240 (368)
T ss_dssp BCEEEEESGGGSB-------------------------HHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEE
T ss_pred CceEEEhhccccC-------------------------hHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCc
Confidence 5799999999773 23455677777643 2234444443 357
Q ss_pred CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHH
Q 011374 369 DRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE 413 (487)
Q Consensus 369 ~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~ 413 (487)
..++++|++ ||.. ++|++|+.+++..+++.++......+.++
T Consensus 241 ~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~ 282 (368)
T 3uk6_A 241 HGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSED 282 (368)
T ss_dssp TTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHH
T ss_pred ccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 889999999 9976 89999999999999998876554444443
No 40
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.71 E-value=4.4e-16 Score=147.17 Aligned_cols=160 Identities=18% Similarity=0.293 Sum_probs=119.1
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
...|.+|++++|.+..++.+...+.. | ..++.++|+||||||||++++++|+.++.
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 83 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 45688999999999988887766541 1 22357999999999999999999998854
Q ss_pred ------------cEEEeecCcccChHHHHHHHHHcc------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCC
Q 011374 275 ------------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (487)
Q Consensus 275 ------------~v~~l~~~~~~~~~~l~~l~~~~~------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (487)
+++.++.........+..++.... .+.||+|||+|.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------------------------ 139 (250)
T 1njg_A 84 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------------------ 139 (250)
T ss_dssp HHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------------------
T ss_pred HHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc------------------------
Confidence 344444443333455667766542 46899999999762
Q ss_pred chhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 337 NRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 337 ~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
...+..|+..++.. +...++|++||.++.+++++.+ |+ ..++++.++.++...++..++...+..+
T Consensus 140 -~~~~~~l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~ 205 (250)
T 1njg_A 140 -RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAH 205 (250)
T ss_dssp -HHHHHHHHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCB
T ss_pred -HHHHHHHHHHHhcC----CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 23455677777653 3458899999999999999988 75 6899999999999999998876444333
No 41
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=1.6e-16 Score=170.37 Aligned_cols=200 Identities=18% Similarity=0.268 Sum_probs=131.3
Q ss_pred CCCceecccCCCCCccccccCHHHHHHHHHHHHHHHhcH-HHHHHhcC---CCcccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 199 TEIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRK-EFYKRVGK---AWKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 199 ~~~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~-~~y~~~g~---~~~rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
...|.. ...|.+|++++|.++.++.+.+.+..+.... ..|...|. +.++++||+||||||||++|+++|+++++
T Consensus 26 ~~lW~e--kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 26 DKLWTV--KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp CCCHHH--HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCccc--ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 346765 5689999999999999999988887654332 22333333 35689999999999999999999999999
Q ss_pred cEEEeecCcccChHHHHHHHHH--------------------ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhccc
Q 011374 275 DVYDLELSSVEGNKDLRQILIA--------------------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334 (487)
Q Consensus 275 ~v~~l~~~~~~~~~~l~~l~~~--------------------~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (487)
+++.++++.......+...+.. ...++||||||+|.+..
T Consensus 104 ~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~--------------------- 162 (516)
T 1sxj_A 104 DILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG--------------------- 162 (516)
T ss_dssp EEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT---------------------
T ss_pred CEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch---------------------
Confidence 9999999887655444333321 14578999999998842
Q ss_pred CCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchH-H
Q 011374 335 QGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFL-E 413 (487)
Q Consensus 335 ~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~-~ 413 (487)
.....+..|++.++.. +..+|+|+++.....++ .+. |+...+.|+.|+.+++..++...+...+..+.+ .
T Consensus 163 -~~~~~l~~L~~~l~~~----~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~ 233 (516)
T 1sxj_A 163 -GDRGGVGQLAQFCRKT----STPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV 233 (516)
T ss_dssp -TSTTHHHHHHHHHHHC----SSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTH
T ss_pred -hhHHHHHHHHHHHHhc----CCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 1123356667766642 12233333333334444 344 445689999999999999888776544433333 2
Q ss_pred HHHHHhhcCCCHHHHHH
Q 011374 414 VEELIEKVEVTPADVAE 430 (487)
Q Consensus 414 i~~l~~~~~~spa~i~~ 430 (487)
+..++....-...++.+
T Consensus 234 l~~la~~s~GdiR~~i~ 250 (516)
T 1sxj_A 234 IDRLIQTTRGDIRQVIN 250 (516)
T ss_dssp HHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHcCCcHHHHHH
Confidence 33343333333333333
No 42
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.70 E-value=9.4e-18 Score=171.86 Aligned_cols=175 Identities=17% Similarity=0.227 Sum_probs=118.9
Q ss_pred cccCHHHHHHHHHHHHHHHhcHHHHHH-hcC-CCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccC-------
Q 011374 216 LAMDFDMKKMIMDDLERFLKRKEFYKR-VGK-AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG------- 286 (487)
Q Consensus 216 l~g~~~~K~~i~~~l~~fl~~~~~y~~-~g~-~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~------- 286 (487)
|+|++.+++.|...+.....+...... .+. ..++++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 689999999998888655433211000 111 25678999999999999999999999999999999887642
Q ss_pred -hHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccC-----
Q 011374 287 -NKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSS----- 354 (487)
Q Consensus 287 -~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~----- 354 (487)
...+..++... ..++||||||||.+...+....... ......+++.||..|||....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~-----------~~~~~~~~~~Ll~~leg~~~~~~~~~ 165 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITR-----------DVSGEGVQQALLKLIEGTVAAVPPQG 165 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---C-----------HHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccccccccc-----------ccchHHHHHHHHHHhcCceeeccCcc
Confidence 23455565544 3578999999998854221100000 011134789999999964210
Q ss_pred ------------CCCceEEEEecCCC----------CC-----------------------------------CCccccC
Q 011374 355 ------------CGDERIIIFTTNHK----------DR-----------------------------------LDPALLR 377 (487)
Q Consensus 355 ------------~~~~~iiI~TTN~~----------~~-----------------------------------LD~ALlR 377 (487)
...++++|+|+|.. .. +.|+|+.
T Consensus 166 ~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~ 245 (363)
T 3hws_A 166 GRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG 245 (363)
T ss_dssp --------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT
T ss_pred ccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc
Confidence 11234555555532 11 6788887
Q ss_pred CCceeeEEEeCCCCHHHHHHHHHHhh
Q 011374 378 PGRMDVHIHMSYCTPCGFKMLASNYL 403 (487)
Q Consensus 378 pGRfd~~I~~~~p~~~~~~~l~~~~l 403 (487)
||+..+.|++|+.+.+..|+...+
T Consensus 246 --R~~~~~~~~pl~~~~~~~I~~~~~ 269 (363)
T 3hws_A 246 --RLPVVATLNELSEEALIQILKEPK 269 (363)
T ss_dssp --TCCEEEECCCCCHHHHHHHHHSST
T ss_pred --ccCeeeecCCCCHHHHHHHHHHHH
Confidence 999999999999999999998644
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.68 E-value=5.8e-17 Score=148.04 Aligned_cols=152 Identities=17% Similarity=0.231 Sum_probs=107.3
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----------CCcEEE
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 278 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----------~~~v~~ 278 (487)
.|.+|++++|.++..+.+.+.+. ...++++||+||||||||++++++|+.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 46789999999888877766543 1335789999999999999999999997 678888
Q ss_pred eecCccc--------ChHHHHHHHHH---ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHH
Q 011374 279 LELSSVE--------GNKDLRQILIA---TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNF 347 (487)
Q Consensus 279 l~~~~~~--------~~~~l~~l~~~---~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 347 (487)
+++.... ....+..++.. ...++||+|||+|.+...... .........|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~-----------------~~~~~~~~~l~~~ 146 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA-----------------DGAMDAGNMLKPA 146 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-----------------------CCCCHHHHHHH
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc-----------------cchHHHHHHHHHh
Confidence 8776542 12234455543 345789999999998642211 0011223333333
Q ss_pred hhccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHH
Q 011374 348 IDGLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLA 399 (487)
Q Consensus 348 lDgl~s~~~~~~iiI~TTN~~~-----~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~ 399 (487)
++. ..+.+|++||.++ .+|+++.+ ||+ .|+++.|+.+++.+++
T Consensus 147 ~~~------~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 147 LAR------GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHT------TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred hcc------CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 332 3467888888776 78999999 998 6999999999988764
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.67 E-value=6e-16 Score=163.00 Aligned_cols=151 Identities=23% Similarity=0.335 Sum_probs=113.3
Q ss_pred cCCCCCccccccCHHHH---HHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCc
Q 011374 207 LDHPATFDTLAMDFDMK---KMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K---~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~ 283 (487)
.-.|.+|++++|.+.+. +.+...+. . |. ..++|||||||||||++|++||+.++.+++.++...
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~----~-------~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIE----A-------GH--LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHH----H-------TC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHH----c-------CC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 35689999999998887 45544443 1 22 257999999999999999999999999999998765
Q ss_pred ccChHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCC
Q 011374 284 VEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGD 357 (487)
Q Consensus 284 ~~~~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~ 357 (487)
. +...++.++..+ ..++||||||||.+.. .....||..++. .
T Consensus 86 ~-~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~-------------------------~~q~~LL~~le~------~ 133 (447)
T 3pvs_A 86 S-GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK-------------------------SQQDAFLPHIED------G 133 (447)
T ss_dssp C-CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------------------CCHHHHHT------T
T ss_pred C-CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH-------------------------HHHHHHHHHHhc------C
Confidence 4 355677666554 3579999999997732 234457888875 2
Q ss_pred ceEEEEec--CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011374 358 ERIIIFTT--NHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 405 (487)
Q Consensus 358 ~~iiI~TT--N~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 405 (487)
.+++|++| |....++++|++ |+. .+.|+.|+.+++..+++.++..
T Consensus 134 ~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 134 TITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp SCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred ceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 35556555 445689999999 886 6889999999999999998864
No 45
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.67 E-value=3.9e-16 Score=155.29 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=117.4
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-----CCcEEEeec
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLEL 281 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-----~~~v~~l~~ 281 (487)
...|.+|++++|.++.++.+...+. . |. ..++|||||||||||++|+++|+.+ +.+++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVE----R-------KN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTT----T-------TC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHh----C-------CC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 4678899999999988887766543 1 21 2249999999999999999999997 456788887
Q ss_pred CcccChHHHHHHHHHc--------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcccc
Q 011374 282 SSVEGNKDLRQILIAT--------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWS 353 (487)
Q Consensus 282 ~~~~~~~~l~~l~~~~--------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s 353 (487)
+...+...++..+... ..+.||+|||+|.+.. .....|+..++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-------------------------~~~~~L~~~le~~-- 129 (319)
T 2chq_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-------------------------DAQAALRRTMEMY-- 129 (319)
T ss_dssp TSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-------------------------HHHHTTGGGTSSS--
T ss_pred ccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-------------------------HHHHHHHHHHHhc--
Confidence 7654333333332221 3478999999997732 2334566666643
Q ss_pred CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 354 SCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 354 ~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
+...++|++||.+..+++++.+ |+. .++|+.|+.+++..++..++...+..+
T Consensus 130 --~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i 181 (319)
T 2chq_A 130 --SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKI 181 (319)
T ss_dssp --SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCB
T ss_pred --CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 3457889999999999999998 775 799999999999999988876554444
No 46
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.66 E-value=1.5e-15 Score=153.16 Aligned_cols=154 Identities=14% Similarity=0.167 Sum_probs=110.8
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHH
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKD 289 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~ 289 (487)
|..++.++|.+++++.+...+.. ++++||+||||||||++|+++|+.++.+++.++++......+
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~ 87 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSD 87 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHH
T ss_pred HHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhh
Confidence 44577899999888877665531 358999999999999999999999999999888753322222
Q ss_pred HHHHH--H-------HccC---CeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc------
Q 011374 290 LRQIL--I-------ATEN---KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL------ 351 (487)
Q Consensus 290 l~~l~--~-------~~~~---~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl------ 351 (487)
+.... . .... .+||||||||.+. ....+.|+..|+..
T Consensus 88 l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~-------------------------~~~~~~Ll~~l~~~~~~~~g 142 (331)
T 2r44_A 88 LIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSP-------------------------AKVQSALLECMQEKQVTIGD 142 (331)
T ss_dssp HHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSC-------------------------HHHHHHHHHHHHHSEEEETT
T ss_pred cCCceeecCCCCceEeccCcccccEEEEEccccCC-------------------------HHHHHHHHHHHhcCceeeCC
Confidence 21100 0 0011 2799999999762 23455566666532
Q ss_pred -ccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011374 352 -WSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 405 (487)
Q Consensus 352 -~s~~~~~~iiI~TTN~~~-----~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 405 (487)
....+...+||+|+|..+ .++++|++ ||+.++++++|+.+++.++++..+..
T Consensus 143 ~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 143 TTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred EEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 111233567888888543 38999999 99999999999999999999998764
No 47
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.65 E-value=2.6e-16 Score=169.74 Aligned_cols=160 Identities=20% Similarity=0.169 Sum_probs=112.9
Q ss_pred ccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChH----
Q 011374 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNK---- 288 (487)
Q Consensus 213 fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~---- 288 (487)
.++++|.+++++.+.+.+...... ....+..+||+||||||||+|+++||+.++.++..+++..+....
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~-------~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLT-------KSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHS-------SSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhc-------ccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 456899999999886655422111 111455799999999999999999999999999999887753322
Q ss_pred -----------HHHHHHHHcc-CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCC-
Q 011374 289 -----------DLRQILIATE-NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSC- 355 (487)
Q Consensus 289 -----------~l~~l~~~~~-~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~- 355 (487)
.+...|..+. ...||||||||.+.... .....+.||..||......
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~---------------------~~~~~~~LL~~ld~~~~~~~ 211 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDF---------------------RGDPSSAMLEVLDPEQNSSF 211 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC------------------------------CCGGGTCTTTTTBC
T ss_pred HHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhh---------------------ccCHHHHHHHHHhhhhccee
Confidence 2233444442 45699999999885411 1224566788887532110
Q ss_pred ----------CCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011374 356 ----------GDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYL 403 (487)
Q Consensus 356 ----------~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l 403 (487)
-..++||+|||.++.+||+|++ ||+ .|+|+.|+.+++..|++.++
T Consensus 212 ~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 212 SDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred ecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 0357999999999999999999 996 69999999999999999987
No 48
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.65 E-value=1.1e-15 Score=156.99 Aligned_cols=175 Identities=18% Similarity=0.239 Sum_probs=115.6
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHH-----------------HhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEE
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYK-----------------RVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~-----------------~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~ 277 (487)
.|+|++++|+.|...+...+.+..... .-....+.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 479999999999888754444322110 011234678999999999999999999999999999
Q ss_pred EeecCcccC--------hHHHHHHHHHc------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhh
Q 011374 278 DLELSSVEG--------NKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSG 343 (487)
Q Consensus 278 ~l~~~~~~~--------~~~l~~l~~~~------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 343 (487)
.++++.+.. ...+..++... ..++||||||||.+...+....... +......++.
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~-----------~~~~~~~~~~ 170 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITR-----------DVSGEGVQQA 170 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-------------------------CHHHHHH
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceec-----------ccchHHHHHH
Confidence 999887631 23345555433 3579999999999864321110000 1222347888
Q ss_pred HHHHhhcccc----C-------------CCCceEEEEecCCC--------------------------------------
Q 011374 344 LLNFIDGLWS----S-------------CGDERIIIFTTNHK-------------------------------------- 368 (487)
Q Consensus 344 LL~~lDgl~s----~-------------~~~~~iiI~TTN~~-------------------------------------- 368 (487)
||..||+... . ...++++|+|||..
T Consensus 171 Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (376)
T 1um8_A 171 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHD 250 (376)
T ss_dssp HHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHH
T ss_pred HHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHH
Confidence 9999986420 0 01335777887721
Q ss_pred ---CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011374 369 ---DRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNY 402 (487)
Q Consensus 369 ---~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~ 402 (487)
..+.|+|+. |++..+.|+.++.++...++...
T Consensus 251 l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~ 285 (376)
T 1um8_A 251 LVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQKP 285 (376)
T ss_dssp HHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred HhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhhh
Confidence 124566777 99999999999999999988753
No 49
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=1.5e-15 Score=153.61 Aligned_cols=164 Identities=17% Similarity=0.202 Sum_probs=119.3
Q ss_pred CCceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC------
Q 011374 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN------ 273 (487)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~------ 273 (487)
..|.. ...|.+|++++|.+++++.+...+. . |. ..++||+||||||||++++++|+.++
T Consensus 25 ~~~~~--k~~p~~~~~i~g~~~~~~~l~~~l~----~-------~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~ 89 (353)
T 1sxj_D 25 QPWVE--KYRPKNLDEVTAQDHAVTVLKKTLK----S-------AN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMK 89 (353)
T ss_dssp -CHHH--HTCCSSTTTCCSCCTTHHHHHHHTT----C-------TT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHH--hcCCCCHHHhhCCHHHHHHHHHHHh----c-------CC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccc
Confidence 35654 4578999999999998887765543 1 11 23499999999999999999999864
Q ss_pred CcEEEeecCcccChHHHHHHHHH------------------ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccC
Q 011374 274 FDVYDLELSSVEGNKDLRQILIA------------------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335 (487)
Q Consensus 274 ~~v~~l~~~~~~~~~~l~~l~~~------------------~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (487)
..++.+++++......+++.+.. ...+.||+|||+|.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~---------------------- 147 (353)
T 1sxj_D 90 SRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA---------------------- 147 (353)
T ss_dssp TSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH----------------------
T ss_pred cceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH----------------------
Confidence 46888888775444444433321 12456999999997732
Q ss_pred CchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 336 GNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 336 ~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
...+.|+..++... ....+|++||++..+++++.+ |+. .++|+.++.++...++...+...+..+
T Consensus 148 ---~~~~~Ll~~le~~~----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i 212 (353)
T 1sxj_D 148 ---DAQSALRRTMETYS----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKC 212 (353)
T ss_dssp ---HHHHHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCC
T ss_pred ---HHHHHHHHHHHhcC----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCC
Confidence 23456777777542 346677889999999999998 886 799999999999999888775444333
No 50
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=2.8e-15 Score=149.41 Aligned_cols=162 Identities=14% Similarity=0.200 Sum_probs=121.0
Q ss_pred CceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-----CCc
Q 011374 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFD 275 (487)
Q Consensus 201 ~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-----~~~ 275 (487)
.|.. ...|.+|++++|.++.++.+...+. . |. .+ .+|||||||||||++|+++|+.+ +.+
T Consensus 10 ~~~~--~~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~-~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~ 74 (323)
T 1sxj_B 10 PWVE--KYRPQVLSDIVGNKETIDRLQQIAK----D-------GN-MP-HMIISGMPGIGKTTSVHCLAHELLGRSYADG 74 (323)
T ss_dssp CHHH--HTCCSSGGGCCSCTHHHHHHHHHHH----S-------CC-CC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred cHHH--hcCCCCHHHHHCCHHHHHHHHHHHH----c-------CC-CC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCC
Confidence 4654 4678899999999998887766553 1 22 22 39999999999999999999986 456
Q ss_pred EEEeecCcccChHHHHHHHHHc--------c-CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHH
Q 011374 276 VYDLELSSVEGNKDLRQILIAT--------E-NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLN 346 (487)
Q Consensus 276 v~~l~~~~~~~~~~l~~l~~~~--------~-~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 346 (487)
++.++.+...+...+++++... . .+.||+|||+|.+.. .....|+.
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-------------------------~~~~~L~~ 129 (323)
T 1sxj_B 75 VLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-------------------------GAQQALRR 129 (323)
T ss_dssp EEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-------------------------HHHHTTHH
T ss_pred EEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-------------------------HHHHHHHH
Confidence 7888877655556666655432 2 378999999997732 22445667
Q ss_pred HhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCC
Q 011374 347 FIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHP 409 (487)
Q Consensus 347 ~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~ 409 (487)
.++.. +...++|++||.+..+++++.+ |+. .++|+.|+.++...++...+...+..
T Consensus 130 ~le~~----~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~ 185 (323)
T 1sxj_B 130 TMELY----SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVK 185 (323)
T ss_dssp HHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHhcc----CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCC
Confidence 66643 2457888899999999999998 765 79999999999999998876543333
No 51
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=2.1e-15 Score=150.60 Aligned_cols=163 Identities=16% Similarity=0.208 Sum_probs=118.9
Q ss_pred CceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC-----Cc
Q 011374 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FD 275 (487)
Q Consensus 201 ~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~-----~~ 275 (487)
.|.. ...|.+|++++|.++.++.+...+.. |. ..++|||||||||||++|+++|+.+. .+
T Consensus 14 ~~~~--k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~ 78 (327)
T 1iqp_A 14 PWVE--KYRPQRLDDIVGQEHIVKRLKHYVKT-----------GS--MPHLLFAGPPGVGKTTAALALARELFGENWRHN 78 (327)
T ss_dssp CHHH--HTCCCSTTTCCSCHHHHHHHHHHHHH-----------TC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred chhh--ccCCCCHHHhhCCHHHHHHHHHHHHc-----------CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCc
Confidence 5654 46789999999999988887765541 21 22499999999999999999999873 34
Q ss_pred EEEeecCcccChHHHHHHHHH----c----cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHH
Q 011374 276 VYDLELSSVEGNKDLRQILIA----T----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNF 347 (487)
Q Consensus 276 v~~l~~~~~~~~~~l~~l~~~----~----~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 347 (487)
++.+++++..+...++..+.. . ..+.||+|||+|.+. ....+.|+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-------------------------~~~~~~L~~~ 133 (327)
T 1iqp_A 79 FLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT-------------------------QDAQQALRRT 133 (327)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-------------------------HHHHHHHHHH
T ss_pred eEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-------------------------HHHHHHHHHH
Confidence 777777654322233332221 1 357899999999773 2234567777
Q ss_pred hhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 348 IDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 348 lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
++.. +....+|++||.++.+++++.+ |+. .++|++++.++...++...+...+..+
T Consensus 134 le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~ 189 (327)
T 1iqp_A 134 MEMF----SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLEL 189 (327)
T ss_dssp HHHT----TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEE
T ss_pred HHhc----CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence 7753 2457888899999999999998 876 799999999999999988776544434
No 52
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.64 E-value=4.9e-15 Score=150.89 Aligned_cols=180 Identities=18% Similarity=0.262 Sum_probs=127.0
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
...|.+|++++|.++.++.+...+.. | ..+..+||+||||||||++++++|+.++.
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 76 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 45788999999999888877766531 1 23457999999999999999999999864
Q ss_pred ------------cEEEeecCcccChHHHHHHHHHcc------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCC
Q 011374 275 ------------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (487)
Q Consensus 275 ------------~v~~l~~~~~~~~~~l~~l~~~~~------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (487)
+++.++.........++.++.... .+.||+|||+|.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------------------------ 132 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------------------ 132 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC------------------------
T ss_pred HHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc------------------------
Confidence 345555443223345666665542 46899999999762
Q ss_pred chhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHH-HH
Q 011374 337 NRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE-VE 415 (487)
Q Consensus 337 ~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~-i~ 415 (487)
....+.|+..++.. +...++|++||.+..+++++.+ |+ ..++|+.++.++...++..++...+....++ +.
T Consensus 133 -~~~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~ 204 (373)
T 1jr3_A 133 -RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 204 (373)
T ss_dssp -HHHHHHHHHHHHSC----CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHH
T ss_pred -HHHHHHHHHHHhcC----CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 23456677777753 3468889999999999999998 76 6799999999999999988875444443332 33
Q ss_pred HHHhhcCCCHHHHHH
Q 011374 416 ELIEKVEVTPADVAE 430 (487)
Q Consensus 416 ~l~~~~~~spa~i~~ 430 (487)
.++....-++.++.+
T Consensus 205 ~l~~~~~G~~r~~~~ 219 (373)
T 1jr3_A 205 LLARAAEGSLRDALS 219 (373)
T ss_dssp HHHHHSSSCHHHHHH
T ss_pred HHHHHCCCCHHHHHH
Confidence 333333344444433
No 53
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.64 E-value=1.1e-15 Score=145.35 Aligned_cols=165 Identities=14% Similarity=0.161 Sum_probs=107.6
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC---CcEEEeecCc
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSS 283 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~---~~v~~l~~~~ 283 (487)
+.++.+|+++++.+ ..+.+++.+..+... +.++++||+||||||||++++++|+.+. .+++.+++..
T Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 21 LPDDETFTSYYPAA-GNDELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CCTTCSTTTSCC---CCHHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCCCChhhccCCC-CCHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 44457999999832 223344445444332 2457899999999999999999999884 7788888776
Q ss_pred ccChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEE
Q 011374 284 VEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIF 363 (487)
Q Consensus 284 ~~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~ 363 (487)
+.. .+.+.+.....+.||+|||+|.+... ......|+..++..... ....+|+
T Consensus 91 ~~~--~~~~~~~~~~~~~vliiDe~~~~~~~-----------------------~~~~~~l~~~l~~~~~~--~~~~ii~ 143 (242)
T 3bos_A 91 HAS--ISTALLEGLEQFDLICIDDVDAVAGH-----------------------PLWEEAIFDLYNRVAEQ--KRGSLIV 143 (242)
T ss_dssp GGG--SCGGGGTTGGGSSEEEEETGGGGTTC-----------------------HHHHHHHHHHHHHHHHH--CSCEEEE
T ss_pred HHH--HHHHHHHhccCCCEEEEeccccccCC-----------------------HHHHHHHHHHHHHHHHc--CCCeEEE
Confidence 532 12223334466899999999987321 11133455555544322 1232455
Q ss_pred ecC-CCC---CCCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCcCCCCc
Q 011374 364 TTN-HKD---RLDPALLRPGRMD--VHIHMSYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 364 TTN-~~~---~LD~ALlRpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
||| .+. .+++++.+ |+. ..++++.|+.+++..++..++...+..+
T Consensus 144 ~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~ 194 (242)
T 3bos_A 144 SASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL 194 (242)
T ss_dssp EESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC
T ss_pred EcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 554 444 45688888 775 8899999999999999998876444333
No 54
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.63 E-value=2.1e-15 Score=150.06 Aligned_cols=160 Identities=16% Similarity=0.252 Sum_probs=115.4
Q ss_pred cccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChHHH
Q 011374 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDL 290 (487)
Q Consensus 214 d~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~~l 290 (487)
+.++|....++.+...+......-. ....+...+||+||||||||++|+++|+.+ +.+++.++++.+......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~----~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK----DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS----CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 3577888888888887765432100 001123469999999999999999999998 566899998877543333
Q ss_pred HHHH---------------H---HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc
Q 011374 291 RQIL---------------I---ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW 352 (487)
Q Consensus 291 ~~l~---------------~---~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~ 352 (487)
..++ . .....+||||||||.+. ....+.|+..|+.-.
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~-------------------------~~~~~~Ll~~le~~~ 147 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH-------------------------PDVFNILLQMLDDGR 147 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC-------------------------HHHHHHHHHHHHHSE
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC-------------------------HHHHHHHHHHHhcCE
Confidence 3322 1 11245899999999762 345667788877532
Q ss_pred cCCC-------CceEEEEecCC--------------------------CCCCCccccCCCceeeEEEeCCCCHHHHHHHH
Q 011374 353 SSCG-------DERIIIFTTNH--------------------------KDRLDPALLRPGRMDVHIHMSYCTPCGFKMLA 399 (487)
Q Consensus 353 s~~~-------~~~iiI~TTN~--------------------------~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~ 399 (487)
...+ .+.++|+|||. ...++|+|++ ||+..+.+++|+.+++..|+
T Consensus 148 ~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~ 225 (311)
T 4fcw_A 148 LTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIV 225 (311)
T ss_dssp EECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHH
T ss_pred EEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHH
Confidence 1111 25789999998 5578899998 99999999999999999999
Q ss_pred HHhhC
Q 011374 400 SNYLG 404 (487)
Q Consensus 400 ~~~l~ 404 (487)
+.++.
T Consensus 226 ~~~l~ 230 (311)
T 4fcw_A 226 EIQMS 230 (311)
T ss_dssp HHHTH
T ss_pred HHHHH
Confidence 98875
No 55
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.63 E-value=3.9e-15 Score=151.77 Aligned_cols=160 Identities=16% Similarity=0.149 Sum_probs=113.5
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---------CCcEEEeecC
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELS 282 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---------~~~v~~l~~~ 282 (487)
.++.++|.++..+.+...+...+. ...+++++|+||||||||++++++++.+ +.+++.+++.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 458899999888888776543221 2345789999999999999999999998 7888889877
Q ss_pred cccCh----------------------HH-HHHHHHH---ccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCC
Q 011374 283 SVEGN----------------------KD-LRQILIA---TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (487)
Q Consensus 283 ~~~~~----------------------~~-l~~l~~~---~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (487)
...+. .. +..++.. ...++||||||+|.+... ..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~--------------------~~ 147 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKR--------------------PG 147 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHS--------------------TT
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhccc--------------------CC
Confidence 64321 12 2222222 234679999999988531 00
Q ss_pred chhhHhhHHHHhhccccCCCCceEEEEecCCC---CCCCccccCCCceee-EEEeCCCCHHHHHHHHHHhhC
Q 011374 337 NRVTLSGLLNFIDGLWSSCGDERIIIFTTNHK---DRLDPALLRPGRMDV-HIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 337 ~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~---~~LD~ALlRpGRfd~-~I~~~~p~~~~~~~l~~~~l~ 404 (487)
....+..+++.++.... +..+++|++||.+ +.+++++.+ ||.. .++|++++.+++..+++..+.
T Consensus 148 ~~~~l~~l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 148 GQDLLYRITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp HHHHHHHHHHGGGCC-------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred CChHHHhHhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 23445556665554310 2457899999987 788999998 8875 899999999999999998775
No 56
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.62 E-value=3e-15 Score=150.52 Aligned_cols=187 Identities=15% Similarity=0.230 Sum_probs=117.4
Q ss_pred cCCCCCccccc-cCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011374 207 LDHPATFDTLA-MDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (487)
Q Consensus 207 ~~~p~~fd~l~-g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~ 282 (487)
+.+..+|++++ |... ... ...+..+...+ .....+++||||||||||+|++++|+.+ +.+++.+++.
T Consensus 4 l~~~~~f~~fv~g~~~-~~a-~~~~~~~~~~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGN-RLA-YEVVKEALENL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CCTTCCSSSCCCCTTT-HHH-HHHHHHHHHTT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCCcccCCCCCcH-HHH-HHHHHHHHhCc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 34456899997 4322 221 22233333221 1235689999999999999999999999 8999999877
Q ss_pred cccCh--H-----HHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCC
Q 011374 283 SVEGN--K-----DLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSC 355 (487)
Q Consensus 283 ~~~~~--~-----~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~ 355 (487)
.+... . .+..+......+.||||||||.+... ..+...|+..++.....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~-----------------------~~~~~~l~~~l~~~~~~- 130 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGK-----------------------ERTQIEFFHIFNTLYLL- 130 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTC-----------------------HHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCC-----------------------hHHHHHHHHHHHHHHHC-
Confidence 65210 0 01111222345899999999987421 12233455555544322
Q ss_pred CCceEEEEecCCCC---CCCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHH-HHhhcCCCHHHHH
Q 011374 356 GDERIIIFTTNHKD---RLDPALLRPGRMD--VHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEE-LIEKVEVTPADVA 429 (487)
Q Consensus 356 ~~~~iiI~TTN~~~---~LD~ALlRpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~-l~~~~~~spa~i~ 429 (487)
+.++|++++|.+. .++++|.+ ||+ ..+++++ +.+++..+++.++...+..+.+++.. +.... -...++.
T Consensus 131 -~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~ 205 (324)
T 1l8q_A 131 -EKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIE 205 (324)
T ss_dssp -TCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHH
T ss_pred -CCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHH
Confidence 2356666766665 68999998 886 7899999 99999999999886555555444333 33333 4444443
Q ss_pred HH
Q 011374 430 EQ 431 (487)
Q Consensus 430 ~~ 431 (487)
+.
T Consensus 206 ~~ 207 (324)
T 1l8q_A 206 GK 207 (324)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 57
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.62 E-value=5e-14 Score=142.69 Aligned_cols=191 Identities=18% Similarity=0.196 Sum_probs=130.0
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccC
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG 286 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~ 286 (487)
.-.|.+|+.++|.+.+++.+...+..-. ..| ..+..++|+||||||||||++++|+.++.++...+......
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAK-------MRG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHH-------HHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHH-------hcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 3568899999998777666544433211 112 23467999999999999999999999999887776666556
Q ss_pred hHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc------cC------
Q 011374 287 NKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW------SS------ 354 (487)
Q Consensus 287 ~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~------s~------ 354 (487)
..++..++.....+.|++|||++.+... ....|+..+.... ..
T Consensus 90 ~~~l~~~~~~~~~~~v~~iDE~~~l~~~-------------------------~~e~L~~~~~~~~~~i~~~~~~~~~~i 144 (334)
T 1in4_A 90 QGDMAAILTSLERGDVLFIDEIHRLNKA-------------------------VEELLYSAIEDFQIDIMIGKGPSAKSI 144 (334)
T ss_dssp HHHHHHHHHHCCTTCEEEEETGGGCCHH-------------------------HHHHHHHHHHTSCCCC-----------
T ss_pred HHHHHHHHHHccCCCEEEEcchhhcCHH-------------------------HHHHHHHHHHhcccceeeccCcccccc
Confidence 6677777766667889999999987431 0111222221110 00
Q ss_pred --CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHH-HHHHHhhcCCCHHHHHHH
Q 011374 355 --CGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE-VEELIEKVEVTPADVAEQ 431 (487)
Q Consensus 355 --~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~-i~~l~~~~~~spa~i~~~ 431 (487)
.-....++.+||++..|++++.+ ||...+.+++++.+++..+++......+..+.++ +..++....-+|..+.+.
T Consensus 145 ~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 145 RIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp ----CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred cccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHH
Confidence 00135667799999999999999 9998999999999999999988765444444333 334444445566555444
Q ss_pred H
Q 011374 432 L 432 (487)
Q Consensus 432 l 432 (487)
|
T Consensus 223 l 223 (334)
T 1in4_A 223 T 223 (334)
T ss_dssp H
T ss_pred H
Confidence 4
No 58
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.62 E-value=6.2e-15 Score=156.24 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=107.1
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----------CCcEE
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVY 277 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----------~~~v~ 277 (487)
..|..|+.++|.++..+.+++.+. ...+.++||+||||||||++|+++|+.+ +.+++
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~-------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhcCCCCCccCcHHHHHHHHHHHh-------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 457789999999998888877654 2345689999999999999999999997 78899
Q ss_pred EeecCcc---cChHHHHHHHHHcc--CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc
Q 011374 278 DLELSSV---EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW 352 (487)
Q Consensus 278 ~l~~~~~---~~~~~l~~l~~~~~--~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~ 352 (487)
.++++.. .....++.+|.... .++||||| .. ....+.|+..|+.
T Consensus 241 ~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~------------------------~~a~~~L~~~L~~-- 289 (468)
T 3pxg_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA------------------------IDASNILKPSLAR-- 289 (468)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC-----C--------------------------------CCCTTS--
T ss_pred EeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc------------------------hhHHHHHHHhhcC--
Confidence 8887621 12345667776553 57899999 10 0112234444431
Q ss_pred cCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011374 353 SSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 405 (487)
Q Consensus 353 s~~~~~~iiI~TTN~~~-----~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 405 (487)
+.+.+|++||.++ .+|++|.| ||.. |.|++|+.+++..|++.++..
T Consensus 290 ----g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 290 ----GELQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp ----SSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTT
T ss_pred ----CCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHH
Confidence 3588999999887 69999999 9985 999999999999999987765
No 59
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.61 E-value=6.7e-15 Score=147.96 Aligned_cols=180 Identities=12% Similarity=0.142 Sum_probs=120.6
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHc----------CCcEEEeecCcccC----------------------hHHHHHH
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLELSSVEG----------------------NKDLRQI 293 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l----------~~~v~~l~~~~~~~----------------------~~~l~~l 293 (487)
..+.+++||||||||||++++++++++ ++.++.+++..+.+ ...+..+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 456789999999999999999999999 45678888766422 2345666
Q ss_pred HHHc----cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCC
Q 011374 294 LIAT----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKD 369 (487)
Q Consensus 294 ~~~~----~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~ 369 (487)
|... ..++|++|||||.+. .+..+..|++... ......+||+++|..+
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~------------------------~q~~L~~l~~~~~----~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL------------------------SEKILQYFEKWIS----SKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC------------------------CTHHHHHHHHHHH----CSSCCEEEEEECCSSC
T ss_pred HHHhhhccCCceEEEEecHHHhh------------------------cchHHHHHHhccc----ccCCcEEEEEEecCcc
Confidence 6653 346899999999884 1334555555432 1224578999999886
Q ss_pred C----CCccccCCCcee-eEEEeCCCCHHHHHHHHHHhhCcCCCCch----------------HHHHHHHh------hcC
Q 011374 370 R----LDPALLRPGRMD-VHIHMSYCTPCGFKMLASNYLGITEHPLF----------------LEVEELIE------KVE 422 (487)
Q Consensus 370 ~----LD~ALlRpGRfd-~~I~~~~p~~~~~~~l~~~~l~~~~~~l~----------------~~i~~l~~------~~~ 422 (487)
. |++++.+ ||. ..|+|++++.++...|+++.+.......+ +.-.+-.+ ...
T Consensus 175 ~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (318)
T 3te6_A 175 TIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHK 252 (318)
T ss_dssp CCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEE
T ss_pred cchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc
Confidence 5 4556666 886 57999999999999999887754221100 00000000 012
Q ss_pred CCHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHhh
Q 011374 423 VTPADVAEQLM----RDEVPKIALSGLIQFLQIKKRE 455 (487)
Q Consensus 423 ~spa~i~~~l~----~~~~~~~al~~l~~~l~~~~~~ 455 (487)
+++..|.-... .++|++.||+-+..+++....+
T Consensus 253 i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e 289 (318)
T 3te6_A 253 INNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKD 289 (318)
T ss_dssp CCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Confidence 45555543333 2689999999999888877654
No 60
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.61 E-value=2.5e-14 Score=144.49 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=101.4
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-------------
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 274 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------- 274 (487)
.+|.+|++++|.+..++.+...+. . +...++|||||||||||++|+++|+.++.
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~----~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAV----D---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHH----C---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHhh----C---------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 456789999999887765422211 1 12357999999999999999999999863
Q ss_pred --------------------cEEEeecCcccChHHH------HHHHHHc-----------cCCeEEEEeccchhhhhhhH
Q 011374 275 --------------------DVYDLELSSVEGNKDL------RQILIAT-----------ENKSILVVEDIDCCLEMQDR 317 (487)
Q Consensus 275 --------------------~v~~l~~~~~~~~~~l------~~l~~~~-----------~~~sIl~IDeiD~~~~~~~~ 317 (487)
+++.+..+. +...+ ...+... ..++||||||||.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~----- 157 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGV--SEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE----- 157 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTC--CHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-----
T ss_pred cccccchhhhhccccccCCCcccccCCCc--chhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCC-----
Confidence 122221111 11111 2222211 237899999999773
Q ss_pred HHhhhcccchhhhhcccCCchhhHhhHHHHhhcc---ccCCC------CceEEEEecCCCC-CCCccccCCCceeeEEEe
Q 011374 318 LAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL---WSSCG------DERIIIFTTNHKD-RLDPALLRPGRMDVHIHM 387 (487)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl---~s~~~------~~~iiI~TTN~~~-~LD~ALlRpGRfd~~I~~ 387 (487)
...+..|+..++.- ....+ ...++|+|||..+ .++++|++ ||+.++++
T Consensus 158 --------------------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l 215 (350)
T 1g8p_A 158 --------------------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEV 215 (350)
T ss_dssp --------------------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEEC
T ss_pred --------------------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEc
Confidence 23345666666531 11111 2478889999754 89999999 99999999
Q ss_pred CCC-CHHHHHHHHHHhh
Q 011374 388 SYC-TPCGFKMLASNYL 403 (487)
Q Consensus 388 ~~p-~~~~~~~l~~~~l 403 (487)
++| +.+.+..|++..+
T Consensus 216 ~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 216 LSPRDVETRVEVIRRRD 232 (350)
T ss_dssp CCCCSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 999 5777778887754
No 61
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.61 E-value=1.1e-14 Score=164.93 Aligned_cols=157 Identities=17% Similarity=0.226 Sum_probs=106.9
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----------CCcEEE
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 278 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----------~~~v~~ 278 (487)
.|..|+.++|.++..+.+++.+. ...++++||+||||||||++|+++|+.+ +.+++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~-------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 47789999999988887776553 2345789999999999999999999998 889999
Q ss_pred eecCcccC--------hHHHHHHHHHc---cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHH
Q 011374 279 LELSSVEG--------NKDLRQILIAT---ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNF 347 (487)
Q Consensus 279 l~~~~~~~--------~~~l~~l~~~~---~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 347 (487)
++++.+.. ...+..++... ..++||||||+|.+.+..... ......+.|...
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-----------------g~~~~~~~L~~~ 294 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE-----------------GAVDAGNMLKPA 294 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------------------HHH
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc-----------------chHHHHHHHHHH
Confidence 99877632 23466777655 357899999999986532111 012223334444
Q ss_pred hhccccCCCCceEEEEecCCCC----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 348 IDGLWSSCGDERIIIFTTNHKD----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 348 lDgl~s~~~~~~iiI~TTN~~~----~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
++. .++.+|++||.++ .+|++|.| ||+. |.++.|+.+++..+++.++.
T Consensus 295 l~~------~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 295 LAR------GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp HHT------TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred HhC------CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 432 3467888888764 48999999 9986 99999999999999987654
No 62
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.60 E-value=1.1e-15 Score=139.50 Aligned_cols=145 Identities=21% Similarity=0.255 Sum_probs=101.5
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----------CCcEEE
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 278 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----------~~~v~~ 278 (487)
.|.+|++++|.++..+.+.+.+. ...++++||+||||||||++++++|+.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~-------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQILS-------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred hccccchhhcchHHHHHHHHHHh-------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 47789999999887777766542 1335689999999999999999999997 778888
Q ss_pred eecCccc----C----hHHHHHHHHHc---cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHH
Q 011374 279 LELSSVE----G----NKDLRQILIAT---ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNF 347 (487)
Q Consensus 279 l~~~~~~----~----~~~l~~l~~~~---~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 347 (487)
+++..+. . ...+..++... ..+.||+|||+|.+...+.. ..........|+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~----------------~~~~~~~~~~l~~~ 147 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV----------------AEGALDAGNILKPM 147 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS----------------CTTSCCTHHHHHHH
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc----------------cccchHHHHHHHHH
Confidence 8765542 1 12344444433 35789999999988531100 01112334445555
Q ss_pred hhccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCC
Q 011374 348 IDGLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCT 391 (487)
Q Consensus 348 lDgl~s~~~~~~iiI~TTN~~~-----~LD~ALlRpGRfd~~I~~~~p~ 391 (487)
++. ..+++|++||.++ .+|+++.+ ||+. |+++.|+
T Consensus 148 ~~~------~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 148 LAR------GELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp HHT------TCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred Hhc------CCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 543 3478889998765 68999999 9985 9999885
No 63
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=4.4e-14 Score=144.39 Aligned_cols=151 Identities=18% Similarity=0.245 Sum_probs=111.3
Q ss_pred cccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-----------CCcEEEeecC
Q 011374 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----------NFDVYDLELS 282 (487)
Q Consensus 214 d~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-----------~~~v~~l~~~ 282 (487)
++++|.++..+.+.+.+..+... ..+++++|+||||||||++++++++.+ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 78999999999998877655442 235689999999999999999999998 8899999876
Q ss_pred ccc-Ch-----------------------HH-HHHHHHHcc-CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCC
Q 011374 283 SVE-GN-----------------------KD-LRQILIATE-NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (487)
Q Consensus 283 ~~~-~~-----------------------~~-l~~l~~~~~-~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (487)
... +. .. +..++.... .+.||+|||+|.+.. ..
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~---------------------~~ 149 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVK---------------------RR 149 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHH---------------------ST
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhcc---------------------CC
Confidence 543 11 11 222222222 234999999998853 11
Q ss_pred chhh-HhhHHHHhhccccCCCCceEEEEecCCC---CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 337 NRVT-LSGLLNFIDGLWSSCGDERIIIFTTNHK---DRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 337 ~~~~-ls~LL~~lDgl~s~~~~~~iiI~TTN~~---~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
.... +..|+... ....+|+|||.+ +.+++++.+ ||+.+++|++++.++...+++.++.
T Consensus 150 ~~~~~l~~l~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 150 GGDIVLYQLLRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp TSHHHHHHHHTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred CCceeHHHHhcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 1222 44444332 347889999987 788999988 8877999999999999999998774
No 64
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=4.1e-14 Score=143.90 Aligned_cols=159 Identities=18% Similarity=0.221 Sum_probs=113.3
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc------CCcEEEeecCcc
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL------NFDVYDLELSSV 284 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l------~~~v~~l~~~~~ 284 (487)
..++.++|.++..+.+.+.+...+. ...++.++|+||||||||+|++++++.+ +..++.+++...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 3458899998888887765543222 1345689999999999999999999998 888888886532
Q ss_pred cC----------------------hHH-HHH---HHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCch
Q 011374 285 EG----------------------NKD-LRQ---ILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR 338 (487)
Q Consensus 285 ~~----------------------~~~-l~~---l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (487)
.+ ... +.. .+.....+.||+|||+|.+.. ....
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~---------------------~~~~ 146 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVK---------------------KYND 146 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHH---------------------SSCS
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhc---------------------cCcC
Confidence 11 122 222 222223489999999998853 1123
Q ss_pred hhHhhHHHHhhccccCCCCceEEEEecCCC---CCCCccccCCCcee-eEEEeCCCCHHHHHHHHHHhhC
Q 011374 339 VTLSGLLNFIDGLWSSCGDERIIIFTTNHK---DRLDPALLRPGRMD-VHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 339 ~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~---~~LD~ALlRpGRfd-~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
..+..|+..++.+ .+..+.+|++||.+ +.+++++.+ ||. ..|+|++++.++...++...+.
T Consensus 147 ~~l~~l~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 147 DILYKLSRINSEV---NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp THHHHHHHHHHSC---CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhchhhc---CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 5577788777754 23457888999877 578888887 664 4899999999999999988764
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.58 E-value=1.1e-14 Score=163.06 Aligned_cols=155 Identities=16% Similarity=0.228 Sum_probs=113.7
Q ss_pred cccccCHHHHHHHHHHHHHHHhcHHHHHHhcCC---Cc-ccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccC
Q 011374 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA---WK-RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG 286 (487)
Q Consensus 214 d~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~---~~-rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~ 286 (487)
+.++|.++.++.|...+..... |.. .+ .++||+||||||||++|+++|+.+ +.+++.++++.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~--------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARA--------GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTT--------TCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHHHc--------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 4678898888888877764322 222 12 259999999999999999999998 78899999988743
Q ss_pred h-----HHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccC-------
Q 011374 287 N-----KDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSS------- 354 (487)
Q Consensus 287 ~-----~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~------- 354 (487)
. ..+...+.. ...+||||||||.+ ....++.||+.||.-.-.
T Consensus 563 ~~~~~~~~l~~~~~~-~~~~vl~lDEi~~~-------------------------~~~~~~~Ll~~le~g~~~~~~g~~~ 616 (758)
T 3pxi_A 563 KHSTSGGQLTEKVRR-KPYSVVLLDAIEKA-------------------------HPDVFNILLQVLEDGRLTDSKGRTV 616 (758)
T ss_dssp SCCCC---CHHHHHH-CSSSEEEEECGGGS-------------------------CHHHHHHHHHHHHHSBCC-----CC
T ss_pred ccccccchhhHHHHh-CCCeEEEEeCcccc-------------------------CHHHHHHHHHHhccCeEEcCCCCEe
Confidence 2 233333332 45689999999866 245677888888852211
Q ss_pred CCCceEEEEecCCCCC------------CCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 355 CGDERIIIFTTNHKDR------------LDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 355 ~~~~~iiI~TTN~~~~------------LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
...+.+||+|||.+.. +.|+|+. |||..|.|++++.+++..|++.++.
T Consensus 617 ~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 617 DFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp BCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHH
Confidence 1134699999997654 7888888 9999999999999999999998775
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.57 E-value=1.5e-14 Score=161.93 Aligned_cols=154 Identities=16% Similarity=0.264 Sum_probs=114.3
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCC----CcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccCh---
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGN--- 287 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~----~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~--- 287 (487)
.++|.++.++.|...+... +.|.. +..++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 4678877777776655422 23332 22369999999999999999999999999999998876321
Q ss_pred ----------------HHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc
Q 011374 288 ----------------KDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL 351 (487)
Q Consensus 288 ----------------~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl 351 (487)
..+...+.. ..++||||||||.+- ...++.|++.||.-
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~-------------------------~~~~~~Ll~~le~~ 584 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAH-------------------------PDVFNILLQVMDNG 584 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSC-------------------------HHHHHHHHHHHHHS
T ss_pred hhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccC-------------------------HHHHHHHHHHhcCc
Confidence 123333333 457999999999652 45678888888842
Q ss_pred cc--CCC-----CceEEEEecCCCC-------------------------CCCccccCCCceeeEEEeCCCCHHHHHHHH
Q 011374 352 WS--SCG-----DERIIIFTTNHKD-------------------------RLDPALLRPGRMDVHIHMSYCTPCGFKMLA 399 (487)
Q Consensus 352 ~s--~~~-----~~~iiI~TTN~~~-------------------------~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~ 399 (487)
.- ..| .+.+||+|||... .++|+|+. |||..|.|++++.+++..|+
T Consensus 585 ~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~ 662 (758)
T 1r6b_X 585 TLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVV 662 (758)
T ss_dssp EEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHH
T ss_pred EEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHH
Confidence 11 111 3478999999754 67888988 99999999999999999999
Q ss_pred HHhhC
Q 011374 400 SNYLG 404 (487)
Q Consensus 400 ~~~l~ 404 (487)
+.++.
T Consensus 663 ~~~l~ 667 (758)
T 1r6b_X 663 DKFIV 667 (758)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 67
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=2.4e-14 Score=145.21 Aligned_cols=182 Identities=12% Similarity=0.147 Sum_probs=120.0
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC------------
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------ 274 (487)
..+|.+|++++|.+++++.+...+. . .|. .+. +||+||||||||++++++|+.+..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~---~-------~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSD---Q-------PRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTT---C-------TTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHh---h-------CCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 4679999999999888776654431 1 122 233 999999999999999999996521
Q ss_pred -----------------cEEEeecCcccChH--HHHHHHHHc----------------cCCeEEEEeccchhhhhhhHHH
Q 011374 275 -----------------DVYDLELSSVEGNK--DLRQILIAT----------------ENKSILVVEDIDCCLEMQDRLA 319 (487)
Q Consensus 275 -----------------~v~~l~~~~~~~~~--~l~~l~~~~----------------~~~sIl~IDeiD~~~~~~~~~~ 319 (487)
+++.++.+...... .+++.+... .++.||+|||++.+-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~------- 147 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT------- 147 (354)
T ss_dssp -----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-------
T ss_pred ecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-------
Confidence 23334333221111 345544332 256799999999742
Q ss_pred hhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHH
Q 011374 320 KAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLA 399 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~ 399 (487)
....+.|+..++... .+..+|++||.++.+.+++.+ |+ ..++|+.|+.+++..++
T Consensus 148 ------------------~~~~~~L~~~le~~~----~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l 202 (354)
T 1sxj_E 148 ------------------KDAQAALRRTMEKYS----KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTIL 202 (354)
T ss_dssp ------------------HHHHHHHHHHHHHST----TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHhhc----CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHH
Confidence 233456777777542 347889999999999999998 87 78999999999999999
Q ss_pred HHhhCcCCCCch-H-HHHHHHhhcCCCHHHHHHHH
Q 011374 400 SNYLGITEHPLF-L-EVEELIEKVEVTPADVAEQL 432 (487)
Q Consensus 400 ~~~l~~~~~~l~-~-~i~~l~~~~~~spa~i~~~l 432 (487)
+..+..++..+. + .++.++....-++.++.+.+
T Consensus 203 ~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 203 SDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp HHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 887755444333 3 33444444445555554444
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.56 E-value=4.9e-14 Score=157.71 Aligned_cols=158 Identities=23% Similarity=0.285 Sum_probs=112.9
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----------CCcEEE
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 278 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----------~~~v~~ 278 (487)
.|..|+.++|.++..+.+++.+. ...+.++||+||||||||++|+++|+.+ +..++.
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hcCCCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 46789999999988888766553 2356789999999999999999999987 667888
Q ss_pred eecCccc--------ChHHHHHHHHHcc--CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHh
Q 011374 279 LELSSVE--------GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFI 348 (487)
Q Consensus 279 l~~~~~~--------~~~~l~~l~~~~~--~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 348 (487)
++++.+. ....++.++.... .++||||||+|.+.+... ....... ..+.+
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~-----------------~~~~~~~---~~~~L 307 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGA-----------------ASGGQVD---AANLI 307 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCC-----------------SSSCHHH---HHHHH
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCC-----------------CCcchHH---HHHHH
Confidence 8776542 1356777777664 379999999999864211 0001111 22233
Q ss_pred hccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 349 DGLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 349 Dgl~s~~~~~~iiI~TTN~~~-----~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
..+... .+..+|++||.++ .+|++|.| ||+ .+.|+.|+.+++..+++.++.
T Consensus 308 ~~~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 308 KPLLSS--GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp SSCSSS--CCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHhC--CCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHH
Confidence 222222 3577888888653 57899999 998 699999999999999887653
No 69
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.55 E-value=3.2e-14 Score=149.61 Aligned_cols=187 Identities=19% Similarity=0.256 Sum_probs=117.5
Q ss_pred cCCCCCccccc-cCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-----CCcEEEee
Q 011374 207 LDHPATFDTLA-MDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLE 280 (487)
Q Consensus 207 ~~~p~~fd~l~-g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-----~~~v~~l~ 280 (487)
+.+..+|++++ |..... ....+..+...+ |. ..+++||||||||||+|++++|+++ +.+++.++
T Consensus 98 l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 33445899987 543322 223333333321 21 5689999999999999999999998 88888888
Q ss_pred cCcccChHHHH---------HHHHHcc-CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhc
Q 011374 281 LSSVEGNKDLR---------QILIATE-NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDG 350 (487)
Q Consensus 281 ~~~~~~~~~l~---------~l~~~~~-~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDg 350 (487)
+..+. ..+. .+..... .+.||||||+|.+.+. ..+...|+..++.
T Consensus 168 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~-----------------------~~~q~~l~~~l~~ 222 (440)
T 2z4s_A 168 SEKFL--NDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK-----------------------TGVQTELFHTFNE 222 (440)
T ss_dssp HHHHH--HHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC-----------------------HHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC-----------------------hHHHHHHHHHHHH
Confidence 76651 1121 1222234 6899999999987431 1233445565555
Q ss_pred cccCCCCceEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHH-HHHhhcCCC
Q 011374 351 LWSSCGDERIIIFTTNHKDR---LDPALLRPGRMD--VHIHMSYCTPCGFKMLASNYLGITEHPLFLEVE-ELIEKVEVT 424 (487)
Q Consensus 351 l~s~~~~~~iiI~TTN~~~~---LD~ALlRpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~-~l~~~~~~s 424 (487)
+... +..+||.|.+.+.. ++++|++ ||+ ..+.++.|+.+++..+++..+...+..+.+++. .++....-+
T Consensus 223 l~~~--~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn 298 (440)
T 2z4s_A 223 LHDS--GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDN 298 (440)
T ss_dssp HHTT--TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSC
T ss_pred HHHC--CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 4322 23455544444554 8899998 886 789999999999999999887644444444333 333334455
Q ss_pred HHHHHHHH
Q 011374 425 PADVAEQL 432 (487)
Q Consensus 425 pa~i~~~l 432 (487)
+.++.+.|
T Consensus 299 ~R~l~~~L 306 (440)
T 2z4s_A 299 LRRLRGAI 306 (440)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 70
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=1.2e-13 Score=139.94 Aligned_cols=161 Identities=22% Similarity=0.305 Sum_probs=116.5
Q ss_pred CCceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC-----
Q 011374 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF----- 274 (487)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~----- 274 (487)
..|.. ...|.+|++++|.+.+++.|...+. . |. .+ ++|||||||||||++++++|+.+..
T Consensus 13 ~~~~~--k~rp~~~~~~~g~~~~~~~L~~~i~----~-------g~-~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~ 77 (340)
T 1sxj_C 13 LPWVE--KYRPETLDEVYGQNEVITTVRKFVD----E-------GK-LP-HLLFYGPPGTGKTSTIVALAREIYGKNYSN 77 (340)
T ss_dssp CCHHH--HTCCSSGGGCCSCHHHHHHHHHHHH----T-------TC-CC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHH
T ss_pred CchHH--HhCCCcHHHhcCcHHHHHHHHHHHh----c-------CC-Cc-eEEEECCCCCCHHHHHHHHHHHHcCCCccc
Confidence 35655 4689999999999887776655443 1 22 22 3999999999999999999999743
Q ss_pred cEEEeecCcccChHHHHHHHHHc--------cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHH
Q 011374 275 DVYDLELSSVEGNKDLRQILIAT--------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLN 346 (487)
Q Consensus 275 ~v~~l~~~~~~~~~~l~~l~~~~--------~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 346 (487)
.+..++.++..+...+++.+... ..+.|++|||+|.+.. ...+.|+.
T Consensus 78 ~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~-------------------------~~~~~L~~ 132 (340)
T 1sxj_C 78 MVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN-------------------------AAQNALRR 132 (340)
T ss_dssp HEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-------------------------HHHHHHHH
T ss_pred eEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH-------------------------HHHHHHHH
Confidence 46777776654455555544321 2368999999997732 23455777
Q ss_pred HhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC
Q 011374 347 FIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITE 407 (487)
Q Consensus 347 ~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~ 407 (487)
.++.. .....+|++||.+..+.|++.+ |+. .+.|+.++.++....+...+..+.
T Consensus 133 ~le~~----~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 133 VIERY----TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp HHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred HHhcC----CCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcC
Confidence 77754 2346778889999999999999 875 689999999998888887764333
No 71
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=2.5e-13 Score=138.74 Aligned_cols=159 Identities=15% Similarity=0.048 Sum_probs=114.2
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----CCcEEEeecCcccCh
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELSSVEGN 287 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----~~~v~~l~~~~~~~~ 287 (487)
.++.++|.++..+.+...+....... .+..+.++|+||||||||++++++++.+ +..++.+++....+.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~-------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNP-------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHST-------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCC-------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 34789999999999888877554431 1112379999999999999999999999 677888887654321
Q ss_pred HH--------------------------HHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhH
Q 011374 288 KD--------------------------LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTL 341 (487)
Q Consensus 288 ~~--------------------------l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 341 (487)
.. +...+.....+.||+|||+|.+- ...+
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-------------------------~~~~ 142 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-------------------------PDIL 142 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-------------------------HHHH
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-------------------------hHHH
Confidence 11 11122223457899999999761 3445
Q ss_pred hhHHHHhhccccCCCCceEEEEecCCC---CCCCccccCCCceee-EEEeCCCCHHHHHHHHHHhhC
Q 011374 342 SGLLNFIDGLWSSCGDERIIIFTTNHK---DRLDPALLRPGRMDV-HIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 342 s~LL~~lDgl~s~~~~~~iiI~TTN~~---~~LD~ALlRpGRfd~-~I~~~~p~~~~~~~l~~~~l~ 404 (487)
..|+..++...........+|++||.+ +.+++.+.+ ||.. .++|++++.++...++...+.
T Consensus 143 ~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 143 STFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp HHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 666776665422101257888999988 778888888 8875 799999999999999988765
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.55 E-value=1e-13 Score=155.18 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=107.9
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----------CCcEE
Q 011374 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVY 277 (487)
Q Consensus 208 ~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----------~~~v~ 277 (487)
..|..|+.++|.++..+.+++.+. ...+.++||+||||||||++|+++|+.+ +.+++
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~-------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHHh-------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 456789999999999988877654 2445689999999999999999999997 88888
Q ss_pred EeecCcc---cChHHHHHHHHHc--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc
Q 011374 278 DLELSSV---EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW 352 (487)
Q Consensus 278 ~l~~~~~---~~~~~l~~l~~~~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~ 352 (487)
.+++..- .....++.+|..+ ..++||||| .. ....+.|+..++
T Consensus 241 ~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~------------------------~~~~~~L~~~l~--- 288 (758)
T 3pxi_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA------------------------IDASNILKPSLA--- 288 (758)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC-----C--------------------------------CCCTT---
T ss_pred EecccccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc------------------------hhHHHHHHHHHh---
Confidence 8887221 1234677777655 358999999 10 011223444443
Q ss_pred cCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011374 353 SSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 405 (487)
Q Consensus 353 s~~~~~~iiI~TTN~~~-----~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 405 (487)
.+++.+|+|||..+ .+||+|.| ||. .|.|+.|+.+++..|++.++..
T Consensus 289 ---~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 289 ---RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp ---SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred ---cCCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 24588999999988 79999999 995 5999999999999999987654
No 73
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.51 E-value=6.9e-14 Score=136.46 Aligned_cols=155 Identities=12% Similarity=0.146 Sum_probs=102.1
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC---CcEEEeecCcccCh
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSSVEGN 287 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~---~~v~~l~~~~~~~~ 287 (487)
.+|++++|.....+.+++.+..... .+.++||+||||||||++|+++++.+. .+++.++++.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~- 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE- 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-
T ss_pred cccccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-
Confidence 3799999999998888887765432 346899999999999999999999985 6899999988732
Q ss_pred HHHHH-HHH-----------------HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhh
Q 011374 288 KDLRQ-ILI-----------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFID 349 (487)
Q Consensus 288 ~~l~~-l~~-----------------~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD 349 (487)
..+.. +|. ....+++|||||||.+.. .....|+..++
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~-------------------------~~q~~Ll~~l~ 125 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM-------------------------MVQEKLLRVIE 125 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH-------------------------HHHHHHHHHHH
T ss_pred hHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH-------------------------HHHHHHHHHHH
Confidence 22222 221 112468999999997732 23455666666
Q ss_pred ccc-cC------CCCceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCCH--HHHHHHHHHhhC
Q 011374 350 GLW-SS------CGDERIIIFTTNHK-------DRLDPALLRPGRMD-VHIHMSYCTP--CGFKMLASNYLG 404 (487)
Q Consensus 350 gl~-s~------~~~~~iiI~TTN~~-------~~LD~ALlRpGRfd-~~I~~~~p~~--~~~~~l~~~~l~ 404 (487)
.-. .. ....+.||+|||.+ ..++++|.. ||+ ..|.+|.... +++..+++.++.
T Consensus 126 ~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~ 195 (265)
T 2bjv_A 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAI 195 (265)
T ss_dssp HCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred hCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHH
Confidence 321 00 01246788999974 357889988 885 5677777664 567777776653
No 74
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.48 E-value=1.4e-12 Score=131.93 Aligned_cols=126 Identities=20% Similarity=0.209 Sum_probs=97.6
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcCC------------------------cEEEeecC---cccChHHHHHHHHHcc
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNF------------------------DVYDLELS---SVEGNKDLRQILIATE 298 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~~------------------------~v~~l~~~---~~~~~~~l~~l~~~~~ 298 (487)
..+.+||||||||||||++|+++|+.+.. +++.++.. .-.+.+.+++++....
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~ 101 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLN 101 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTT
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHh
Confidence 34567999999999999999999998853 45666653 2234456777776542
Q ss_pred ------CCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCC
Q 011374 299 ------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLD 372 (487)
Q Consensus 299 ------~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD 372 (487)
.+.|++|||+|.+. ....+.||..++.- +...++|++||.++++.
T Consensus 102 ~~~~~~~~kvviIdead~l~-------------------------~~a~naLLk~lEep----~~~~~~Il~t~~~~~l~ 152 (334)
T 1a5t_A 102 EHARLGGAKVVWVTDAALLT-------------------------DAAANALLKTLEEP----PAETWFFLATREPERLL 152 (334)
T ss_dssp SCCTTSSCEEEEESCGGGBC-------------------------HHHHHHHHHHHTSC----CTTEEEEEEESCGGGSC
T ss_pred hccccCCcEEEEECchhhcC-------------------------HHHHHHHHHHhcCC----CCCeEEEEEeCChHhCc
Confidence 46899999999873 23456788888752 35688899999999999
Q ss_pred ccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011374 373 PALLRPGRMDVHIHMSYCTPCGFKMLASNYL 403 (487)
Q Consensus 373 ~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l 403 (487)
|++.+ |+ ..++|+.|+.++...++...+
T Consensus 153 ~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 153 ATLRS--RC-RLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp HHHHT--TS-EEEECCCCCHHHHHHHHHHHC
T ss_pred HHHhh--cc-eeeeCCCCCHHHHHHHHHHhc
Confidence 99998 76 469999999999998887765
No 75
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.44 E-value=1.9e-13 Score=121.63 Aligned_cols=131 Identities=13% Similarity=0.101 Sum_probs=89.5
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChHHHH
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDLR 291 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~~l~ 291 (487)
.++|.....+.+++.+.... ..+..+||+||||||||++|+++++.. +.+++ ++++.+.....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 46777777777777776442 234679999999999999999999987 77888 9999886555556
Q ss_pred HHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCC---
Q 011374 292 QILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHK--- 368 (487)
Q Consensus 292 ~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~--- 368 (487)
..+..+ .+++|||||||.+. ......|+..|... .....+|+|||.+
T Consensus 70 ~~~~~a-~~g~l~ldei~~l~-------------------------~~~q~~Ll~~l~~~----~~~~~~I~~t~~~~~~ 119 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHLT-------------------------REQQYHLVQLQSQE----HRPFRLIGIGDTSLVE 119 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGSC-------------------------HHHHHHHHHHHHSS----SCSSCEEEEESSCHHH
T ss_pred cHHHHc-CCcEEEEcChHHCC-------------------------HHHHHHHHHHHhhc----CCCEEEEEECCcCHHH
Confidence 666554 56799999999773 23345577777443 2335678888863
Q ss_pred ----CCCCccccCCCcee-eEEEeCC
Q 011374 369 ----DRLDPALLRPGRMD-VHIHMSY 389 (487)
Q Consensus 369 ----~~LD~ALlRpGRfd-~~I~~~~ 389 (487)
..+++.|.. |+. ..|++|+
T Consensus 120 ~~~~~~~~~~L~~--rl~~~~i~lPp 143 (145)
T 3n70_A 120 LAASNHIIAELYY--CFAMTQIACLP 143 (145)
T ss_dssp HHHHSCCCHHHHH--HHHHHEEECCC
T ss_pred HHHcCCCCHHHHH--HhcCCEEeCCC
Confidence 244555554 432 2466654
No 76
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.40 E-value=2.3e-12 Score=137.12 Aligned_cols=146 Identities=15% Similarity=0.145 Sum_probs=94.5
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC--cEEEeecCcccChHHH--
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELSSVEGNKDL-- 290 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~--~v~~l~~~~~~~~~~l-- 290 (487)
.++|.+++++.+...+. .+.++||+||||||||+||+++|+.++. ++..+.+.. .+.+++
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcC
Confidence 46677777766654432 1358999999999999999999999854 333333321 111211
Q ss_pred ---------HHHHHHc-----cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc-----
Q 011374 291 ---------RQILIAT-----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL----- 351 (487)
Q Consensus 291 ---------~~l~~~~-----~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl----- 351 (487)
...+... +.++|||||||+.+ ...+.+.|+..|+.-
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~-------------------------~~~~q~~LL~~lee~~v~i~ 141 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKA-------------------------GPAILNTLLTAINERQFRNG 141 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGC-------------------------CHHHHHHHHHHHHSSEEECS
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhh-------------------------cHHHHHHHHHHHHHHhccCC
Confidence 1112111 13569999999854 245667788888532
Q ss_pred --ccCCCCceEEEEecCCCCC---CCccccCCCceeeEEEeCCCCH-HHHHHHHHHhhC
Q 011374 352 --WSSCGDERIIIFTTNHKDR---LDPALLRPGRMDVHIHMSYCTP-CGFKMLASNYLG 404 (487)
Q Consensus 352 --~s~~~~~~iiI~TTN~~~~---LD~ALlRpGRfd~~I~~~~p~~-~~~~~l~~~~l~ 404 (487)
.... ..+++|+|||.+.. ..+++++ ||..+|++++|+. +++..|++....
T Consensus 142 G~~~~~-~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 142 AHVEKI-PMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp SSEEEC-CCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred CCcCCc-chhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 1111 23467888885322 3459999 9999999999997 678888877653
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.38 E-value=1.4e-12 Score=147.90 Aligned_cols=156 Identities=19% Similarity=0.308 Sum_probs=113.4
Q ss_pred ccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCC----CcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCccc
Q 011374 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE 285 (487)
Q Consensus 213 fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~----~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~ 285 (487)
++.|+|..+.++.+...+.... .|.. +..++||+||||||||++|+++|+.+ +.+++.++++.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~--------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRAR--------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHG--------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred hcccCCcHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 3567888888888877765432 1211 22478999999999999999999999 7899999998764
Q ss_pred ChH-------------------HHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHH
Q 011374 286 GNK-------------------DLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLN 346 (487)
Q Consensus 286 ~~~-------------------~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 346 (487)
... .+...+.. ...+||||||||.+ ...+++.|+.
T Consensus 629 ~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l-------------------------~~~~~~~Ll~ 682 (854)
T 1qvr_A 629 EKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKA-------------------------HPDVFNILLQ 682 (854)
T ss_dssp SSGGGGGC--------------CHHHHHHH-CSSEEEEESSGGGS-------------------------CHHHHHHHHH
T ss_pred chhHHHHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEeccccc-------------------------CHHHHHHHHH
Confidence 321 12222222 34689999999865 2456788888
Q ss_pred HhhccccC--CC-----CceEEEEecCC--------------------------CCCCCccccCCCceeeEEEeCCCCHH
Q 011374 347 FIDGLWSS--CG-----DERIIIFTTNH--------------------------KDRLDPALLRPGRMDVHIHMSYCTPC 393 (487)
Q Consensus 347 ~lDgl~s~--~~-----~~~iiI~TTN~--------------------------~~~LD~ALlRpGRfd~~I~~~~p~~~ 393 (487)
.||.-.-. .+ .+.+||+|||. ...+.|+|+. |+|..+.|.+++.+
T Consensus 683 ~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~e 760 (854)
T 1qvr_A 683 ILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKE 760 (854)
T ss_dssp HHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHH
T ss_pred HhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHH
Confidence 88843211 11 25789999997 2346777777 99999999999999
Q ss_pred HHHHHHHHhhC
Q 011374 394 GFKMLASNYLG 404 (487)
Q Consensus 394 ~~~~l~~~~l~ 404 (487)
++..|++.++.
T Consensus 761 di~~i~~~~l~ 771 (854)
T 1qvr_A 761 QIRQIVEIQLS 771 (854)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988875
No 78
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.36 E-value=4.2e-12 Score=127.09 Aligned_cols=123 Identities=17% Similarity=0.257 Sum_probs=97.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc------CCcEEEeecCc-ccChHHHHHHHHHcc------CCeEEEEeccchhhhh
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL------NFDVYDLELSS-VEGNKDLRQILIATE------NKSILVVEDIDCCLEM 314 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l------~~~v~~l~~~~-~~~~~~l~~l~~~~~------~~sIl~IDeiD~~~~~ 314 (487)
...||||||||||||++|+++|+.+ ..+++.++.+. -.+-+.+++++..+. ...|++|||+|.+.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt-- 95 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT-- 95 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC--
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhC--
Confidence 3589999999999999999999864 45788888764 334566777776552 35799999999873
Q ss_pred hhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHH
Q 011374 315 QDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCG 394 (487)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~ 394 (487)
....+.||..|+.- +...++|++||++.+|.|++.+ | .++|+.++.++
T Consensus 96 -----------------------~~a~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~ 143 (305)
T 2gno_A 96 -----------------------QQAANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKE 143 (305)
T ss_dssp -----------------------HHHHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHH
T ss_pred -----------------------HHHHHHHHHHHhCC----CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHH
Confidence 23456788888853 3567888888999999999999 7 79999999999
Q ss_pred HHHHHHHhhC
Q 011374 395 FKMLASNYLG 404 (487)
Q Consensus 395 ~~~l~~~~l~ 404 (487)
....+...++
T Consensus 144 i~~~L~~~~~ 153 (305)
T 2gno_A 144 FRDLVKEKIG 153 (305)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9888877763
No 79
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.35 E-value=3.4e-12 Score=127.67 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=102.2
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChHHHH
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDLR 291 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~~l~ 291 (487)
+++|.....+.+.+.+.... ..+.++||+||||||||++|+++++.. +.+++.++++.+...---.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 57788778888877776442 235689999999999999999999976 5789999998873221111
Q ss_pred HHHH-----------------HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcccc-
Q 011374 292 QILI-----------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWS- 353 (487)
Q Consensus 292 ~l~~-----------------~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s- 353 (487)
.+|. ....+++|||||||.+.. .....|+..++...-
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~-------------------------~~q~~Ll~~l~~~~~~ 126 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP-------------------------LMQVRLLRAIQEREVQ 126 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH-------------------------HHHHHHHHHHHSSBCC
T ss_pred HhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH-------------------------HHHHHHHHHHhcCEee
Confidence 2221 112357999999997732 234557777764320
Q ss_pred ------CCCCceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCC--HHHHHHHHHHhhC
Q 011374 354 ------SCGDERIIIFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCT--PCGFKMLASNYLG 404 (487)
Q Consensus 354 ------~~~~~~iiI~TTN~~-------~~LD~ALlRpGRf-d~~I~~~~p~--~~~~~~l~~~~l~ 404 (487)
.....+.||+|||.. ..+++.|.. || ...|++|+.. .++...|+..++.
T Consensus 127 ~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 127 RVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp BTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred ecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 011246788999975 346777777 77 4557777776 4667777777654
No 80
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.34 E-value=7.5e-13 Score=117.47 Aligned_cols=131 Identities=11% Similarity=-0.010 Sum_probs=86.6
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHH
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQIL 294 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~ 294 (487)
+++|..+..+++.+.+..+.. .+.++||+||||||||++|+++++..+ +++.++++.+.. .....++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~-~~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI-DMPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH-HCHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh-HhhhhHH
Confidence 367777788888887775542 246799999999999999999999988 899898887632 1134444
Q ss_pred HHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCC-CCC--
Q 011374 295 IATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHK-DRL-- 371 (487)
Q Consensus 295 ~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~-~~L-- 371 (487)
.. ..+++|||||||.+.. .....|+..++... ..++.+|+|||.+ +.+
T Consensus 72 ~~-a~~~~l~lDei~~l~~-------------------------~~q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~ 122 (143)
T 3co5_A 72 QK-AEGGVLYVGDIAQYSR-------------------------NIQTGITFIIGKAE---RCRVRVIASCSYAAGSDGI 122 (143)
T ss_dssp HH-TTTSEEEEEECTTCCH-------------------------HHHHHHHHHHHHHT---TTTCEEEEEEEECTTTC--
T ss_pred Hh-CCCCeEEEeChHHCCH-------------------------HHHHHHHHHHHhCC---CCCEEEEEecCCCHHHHHh
Confidence 44 3468999999997732 23344666666432 2346778888854 433
Q ss_pred --CccccCCCce-eeEEEeCC
Q 011374 372 --DPALLRPGRM-DVHIHMSY 389 (487)
Q Consensus 372 --D~ALlRpGRf-d~~I~~~~ 389 (487)
++.|.. |+ ...|++|+
T Consensus 123 ~~~~~L~~--rl~~~~i~lPp 141 (143)
T 3co5_A 123 SCEEKLAG--LFSESVVRIPP 141 (143)
T ss_dssp CHHHHHHH--HSSSEEEEECC
T ss_pred CccHHHHH--HhcCcEEeCCC
Confidence 333443 43 44667765
No 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.33 E-value=2.2e-13 Score=148.37 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=88.3
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeec----Cccc---ChHHH------HHHHHHccCCeEEEEeccchhhhhhh
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL----SSVE---GNKDL------RQILIATENKSILVVEDIDCCLEMQD 316 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~----~~~~---~~~~l------~~l~~~~~~~sIl~IDeiD~~~~~~~ 316 (487)
++||+||||||||+||+++|+.++..++.... ..+. ..... ..-......++|+||||||.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~---- 404 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMR---- 404 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCC----
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCC----
Confidence 79999999999999999999999876664321 1110 00000 0000111246899999999762
Q ss_pred HHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc---------cCCCCceEEEEecCCCC-------------CCCcc
Q 011374 317 RLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW---------SSCGDERIIIFTTNHKD-------------RLDPA 374 (487)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~---------s~~~~~~iiI~TTN~~~-------------~LD~A 374 (487)
....+.|+..|+.-. ...+....||+|||.++ .|++|
T Consensus 405 ---------------------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~a 463 (595)
T 3f9v_A 405 ---------------------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPT 463 (595)
T ss_dssp ---------------------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSS
T ss_pred ---------------------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHH
Confidence 344566788876321 11123468999999886 89999
Q ss_pred ccCCCceee-EEEeCCCCHHHHHHHHHHhhCcC
Q 011374 375 LLRPGRMDV-HIHMSYCTPCGFKMLASNYLGIT 406 (487)
Q Consensus 375 LlRpGRfd~-~I~~~~p~~~~~~~l~~~~l~~~ 406 (487)
|++ |||. .+..++|+.+ ...|+++.+...
T Consensus 464 Ll~--RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 464 ILS--RFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp SGG--GCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred HHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 999 9985 5566888888 888888887653
No 82
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.31 E-value=1.9e-12 Score=118.77 Aligned_cols=95 Identities=20% Similarity=0.297 Sum_probs=66.5
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc----CCcEEEeecCcc
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELSSV 284 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l----~~~v~~l~~~~~ 284 (487)
.+.+|++++......+.+++.+..|..+ +....+.+++|+||||||||+|++++|+.+ +..++.++...+
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHN------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHS------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHh------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 4568999988655566666767666543 334456789999999999999999999988 556666655443
Q ss_pred cChHHHH---------HHHHHccCCeEEEEeccchh
Q 011374 285 EGNKDLR---------QILIATENKSILVVEDIDCC 311 (487)
Q Consensus 285 ~~~~~l~---------~l~~~~~~~sIl~IDeiD~~ 311 (487)
. ..+. .++....++.+|+|||++..
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 79 I--FRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp H--HHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred H--HHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 1 1111 23344457899999999853
No 83
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.28 E-value=1.9e-11 Score=150.49 Aligned_cols=135 Identities=21% Similarity=0.361 Sum_probs=99.0
Q ss_pred cccceeeCCCCCcHHHHH-HHHHHHcCCcEEEeecCcccChHHHHHHHHHc-----------------cCCeEEEEeccc
Q 011374 248 KRGYLLYGPPGTGKSSLI-AAMANYLNFDVYDLELSSVEGNKDLRQILIAT-----------------ENKSILVVEDID 309 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa-~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~~-----------------~~~sIl~IDeiD 309 (487)
++++||+||||||||++| +++++..++.++.++++...+...+...+... ..++||||||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 579999999999999999 56666668889999999888777787777642 124799999998
Q ss_pred hhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhh--ccccCCC------CceEEEEecCCCC-----CCCcccc
Q 011374 310 CCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFID--GLWSSCG------DERIIIFTTNHKD-----RLDPALL 376 (487)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD--gl~s~~~------~~~iiI~TTN~~~-----~LD~ALl 376 (487)
.... + ....+..+.-|.+.+| |++.... .++.+|+|||+++ .|+|+|+
T Consensus 1347 mp~~--d-----------------~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1347 LPKL--D-----------------KYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp CSCC--C-----------------SSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred cccc--c-----------------ccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh
Confidence 5321 0 0011223333334444 4443221 2368999999995 7999999
Q ss_pred CCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 377 RPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 377 RpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
| || ..|+++.|+.++++.|+..++.
T Consensus 1408 R--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1408 R--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp T--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred h--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 9 99 6799999999999999988774
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.26 E-value=5.4e-11 Score=122.42 Aligned_cols=192 Identities=10% Similarity=0.091 Sum_probs=117.6
Q ss_pred CccccccCHHHHHHHHHHH-HHHHhcHHHHHHhcCCCccccee--eCCCCCcHHHHHHHHHHHc---------CCcEEEe
Q 011374 212 TFDTLAMDFDMKKMIMDDL-ERFLKRKEFYKRVGKAWKRGYLL--YGPPGTGKSSLIAAMANYL---------NFDVYDL 279 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l-~~fl~~~~~y~~~g~~~~rg~LL--~GPPGtGKTsLa~alA~~l---------~~~v~~l 279 (487)
..+.++|.++..+.|.+.+ ....... ...++.++| +||||||||+|++++++.+ +..++.+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 3467899888888887776 5333210 023457899 9999999999999999887 4566777
Q ss_pred ecCcccCh----------------------HH----HHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcc
Q 011374 280 ELSSVEGN----------------------KD----LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSAC 333 (487)
Q Consensus 280 ~~~~~~~~----------------------~~----l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~ 333 (487)
++....+. .. +...+.....+.||+|||+|.+...
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~------------------- 153 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSS------------------- 153 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSC-------------------
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhc-------------------
Confidence 76432111 11 1222222345789999999987421
Q ss_pred cCCchhhHhhHHHHhhccccCCC--CceEEEEecCCCC---CCC---ccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011374 334 NQGNRVTLSGLLNFIDGLWSSCG--DERIIIFTTNHKD---RLD---PALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 405 (487)
Q Consensus 334 ~~~~~~~ls~LL~~lDgl~s~~~--~~~iiI~TTN~~~---~LD---~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 405 (487)
.......+..|+..++.... .+ ..+.+|+|||.++ .++ +.+.+ |+...+++++++.++..+++...+..
T Consensus 154 ~~~~~~~l~~l~~~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~ 230 (412)
T 1w5s_A 154 PRIAAEDLYTLLRVHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAEL 230 (412)
T ss_dssp TTSCHHHHHHHHTHHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHh
Confidence 00123455556666654321 02 4577888888664 344 66666 56556999999999999999776542
Q ss_pred C--CCCc-hHHHHHHHhhcC------CCHHHHHHHH
Q 011374 406 T--EHPL-FLEVEELIEKVE------VTPADVAEQL 432 (487)
Q Consensus 406 ~--~~~l-~~~i~~l~~~~~------~spa~i~~~l 432 (487)
. .... .+.+..+..... -.|..+...+
T Consensus 231 ~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~ 266 (412)
T 1w5s_A 231 GLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVAL 266 (412)
T ss_dssp HBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 1 1122 223444444444 5665555443
No 85
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.16 E-value=6.9e-11 Score=110.12 Aligned_cols=97 Identities=22% Similarity=0.289 Sum_probs=64.6
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCC-CcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA-WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV 284 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~-~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~ 284 (487)
.+.+|+++++.....+.+++.+..++... +.. .+++++|+||||||||+|++++|+.+ +.+++.+++..+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY------EPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC------CSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh------hhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 35689999887655555666666665431 111 12789999999999999999999988 667777766543
Q ss_pred cC-------hHHHHHHHHHccCCeEEEEeccchh
Q 011374 285 EG-------NKDLRQILIATENKSILVVEDIDCC 311 (487)
Q Consensus 285 ~~-------~~~l~~l~~~~~~~sIl~IDeiD~~ 311 (487)
.. ...+..++.......+|+|||++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 10 0112223333345679999999764
No 86
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.14 E-value=2.9e-11 Score=124.31 Aligned_cols=121 Identities=20% Similarity=0.255 Sum_probs=87.4
Q ss_pred hcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhh
Q 011374 243 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAK 322 (487)
Q Consensus 243 ~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~ 322 (487)
.+++.++.++|+||||+|||||++++|+.++..++.++... ......+....+..++++||++.......+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~--- 236 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGESRDLP--- 236 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTTTTTCC---
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHHHhhcc---
Confidence 47888889999999999999999999999988766533222 12222344456778899999998753110000
Q ss_pred cccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 011374 323 AAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSY 389 (487)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~ 389 (487)
......+.+.+.+.+||. +.|+++|||++.+ +++++|||++..++..+
T Consensus 237 -----------~~~~~~~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 237 -----------SGQGINNLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp -----------CCSHHHHHHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred -----------ccCcchHHHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 001112457788889874 4578899999999 89999999999888766
No 87
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.07 E-value=2.7e-10 Score=106.89 Aligned_cols=115 Identities=20% Similarity=0.192 Sum_probs=69.5
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHHHHccCCeEEEEeccchhhhhhhHHHhhhc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKA 323 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~ 323 (487)
|.|.++++|||||||||||++|.++|+.++-.++...-+. .. ..+.......|++|||+|... +
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~----f~l~~l~~~kIiiLDEad~~~----~------ 117 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SH----FWLEPLTDTKVAMLDDATTTC----W------ 117 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SC----GGGGGGTTCSSEEEEEECHHH----H------
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--ch----hhhcccCCCCEEEEECCCchh----H------
Confidence 4666778999999999999999999999976554321111 11 012223345699999998432 1
Q ss_pred ccchhhhhcccCCchhhHhhHHHHhhccc----cCCC-----CceEEEEecCCC---CCCCccccCCCceeeEEEeCCCC
Q 011374 324 AIPDLYRSACNQGNRVTLSGLLNFIDGLW----SSCG-----DERIIIFTTNHK---DRLDPALLRPGRMDVHIHMSYCT 391 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~~~ls~LL~~lDgl~----s~~~-----~~~iiI~TTN~~---~~LD~ALlRpGRfd~~I~~~~p~ 391 (487)
......+-+.+||-. .... ...-+|.|||.. +.--+.|.+ |+- .+.|+.|-
T Consensus 118 --------------~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~~~ 180 (212)
T 1tue_A 118 --------------TYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFPNAF 180 (212)
T ss_dssp --------------HHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECCSCC
T ss_pred --------------HHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcCCCC
Confidence 112234667778741 0000 124688899974 222345666 774 57777443
No 88
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.03 E-value=2.4e-10 Score=114.49 Aligned_cols=96 Identities=25% Similarity=0.382 Sum_probs=61.8
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC----CcEEEeecCccc
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLELSSVE 285 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~----~~v~~l~~~~~~ 285 (487)
+.+|+++.+....+..+++.+..|+.. .+..++.+++||||||||||+|+.++|+.+. .+++.+.+..+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQ------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHH------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHh------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 468999987654445566666555543 1222367999999999999999999999765 677666654320
Q ss_pred -------ChHHHHHHHHHccCCeEEEEeccchh
Q 011374 286 -------GNKDLRQILIATENKSILVVEDIDCC 311 (487)
Q Consensus 286 -------~~~~l~~l~~~~~~~sIl~IDeiD~~ 311 (487)
....+..++.......+|+||||+..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 11112222333345679999999754
No 89
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.02 E-value=1.6e-09 Score=118.25 Aligned_cols=53 Identities=34% Similarity=0.301 Sum_probs=42.4
Q ss_pred cCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 207 ~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
..+|.+|++++|...+++.+...+. .+..++|+||||||||+|+++||+.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 3457899999999887766544432 2358999999999999999999998853
No 90
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.96 E-value=1.4e-08 Score=101.58 Aligned_cols=177 Identities=16% Similarity=0.087 Sum_probs=105.9
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~----- 284 (487)
+...+.++|.++..+.|.+ +. . +.++++||+|+|||+|++.+++.++.+++.+++...
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~----~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LR----A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TC----S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCCHHHhcChHHHHHHHHH-hc----C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 3355677888776666654 42 1 478999999999999999999998777777776532
Q ss_pred cC-----------------------------------------------hHHHHHHH---HHcc-CCeEEEEeccchhhh
Q 011374 285 EG-----------------------------------------------NKDLRQIL---IATE-NKSILVVEDIDCCLE 313 (487)
Q Consensus 285 ~~-----------------------------------------------~~~l~~l~---~~~~-~~sIl~IDeiD~~~~ 313 (487)
.+ ...+..++ .... .+.+|+|||++.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 00 01122222 2222 388999999998742
Q ss_pred hhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCC---------CCccccCCCceeeE
Q 011374 314 MQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDR---------LDPALLRPGRMDVH 384 (487)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~---------LD~ALlRpGRfd~~ 384 (487)
......+..|-..++.. .+..+|+|++.... ....+ .||+...
T Consensus 152 ---------------------~~~~~~~~~l~~~~~~~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~ 203 (357)
T 2fna_A 152 ---------------------LRGVNLLPALAYAYDNL-----KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFST 203 (357)
T ss_dssp ---------------------CTTCCCHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEE
T ss_pred ---------------------cCchhHHHHHHHHHHcC-----CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccce
Confidence 00112222232333321 23556666654321 11122 3477678
Q ss_pred EEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhcCCCHHHHHHHH
Q 011374 385 IHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKVEVTPADVAEQL 432 (487)
Q Consensus 385 I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~~~l 432 (487)
+.+++.+.++..+++...+...+....+ ...+....+-.|.-+...+
T Consensus 204 i~l~~l~~~e~~~~l~~~~~~~~~~~~~-~~~i~~~t~G~P~~l~~~~ 250 (357)
T 2fna_A 204 VELKPFSREEAIEFLRRGFQEADIDFKD-YEVVYEKIGGIPGWLTYFG 250 (357)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHTCCCCC-HHHHHHHHCSCHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHhCCCHHHHHHHH
Confidence 9999999999999998766422222211 2555666667777665544
No 91
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.92 E-value=1.4e-09 Score=129.05 Aligned_cols=147 Identities=12% Similarity=0.131 Sum_probs=90.7
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhc----------HHHHHH------hcCC----------Cccc--ceeeCCCCCcHH
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKR----------KEFYKR------VGKA----------WKRG--YLLYGPPGTGKS 262 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~----------~~~y~~------~g~~----------~~rg--~LL~GPPGtGKT 262 (487)
.+|+++.+..+.|+.+++.+.+++.. ++.|+. .|.. +|+| +|||||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 58999999999999999999999854 344554 2222 4455 999999999999
Q ss_pred HHHHHHHHHcCCc---EEEeecCc----------------c--c----ChHHHHHHHHH--ccCCeEEEEeccchhhhhh
Q 011374 263 SLIAAMANYLNFD---VYDLELSS----------------V--E----GNKDLRQILIA--TENKSILVVEDIDCCLEMQ 315 (487)
Q Consensus 263 sLa~alA~~l~~~---v~~l~~~~----------------~--~----~~~~l~~l~~~--~~~~sIl~IDeiD~~~~~~ 315 (487)
+||+++|.+...+ ..-++... + + ++..++.++.. ...+++|++|++|++.+.+
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccc
Confidence 9999999876433 33333322 1 1 34566555543 3468999999999998754
Q ss_pred hHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCC
Q 011374 316 DRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHK 368 (487)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~ 368 (487)
...+..... ......+.++++|..||++.... +++|.+||+.
T Consensus 1177 ~~~g~~~~~--------~~~~~~r~~~q~l~~~~~~~~~~---~v~v~~~n~~ 1218 (1706)
T 3cmw_A 1177 EIEGEIGDS--------HMGLAARMMSQAMRKLAGNLKQS---NTLLIFINQI 1218 (1706)
T ss_dssp HHHSCTTCC--------CTTHHHHHHHHHHHHHHHHHHHT---TCEEEEEECE
T ss_pred ccccccccc--------cccHHHHHHHHHHHHHHhhhccC---CeEEEEeccc
Confidence 321110000 00112346899999999976542 3444488864
No 92
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.89 E-value=9.6e-08 Score=95.40 Aligned_cols=182 Identities=17% Similarity=0.111 Sum_probs=108.3
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCccc---
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE--- 285 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~--- 285 (487)
+|..-+.++|.++..+.|.+.+.. | +.++++||+|+|||+|++.+++..+ ++.+++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 344556788888877777665431 2 5799999999999999999999886 4445443211
Q ss_pred ---Ch------------------------------------HHHHHH---HHHc---cCCeEEEEeccchhhhhhhHHHh
Q 011374 286 ---GN------------------------------------KDLRQI---LIAT---ENKSILVVEDIDCCLEMQDRLAK 320 (487)
Q Consensus 286 ---~~------------------------------------~~l~~l---~~~~---~~~sIl~IDeiD~~~~~~~~~~~ 320 (487)
+. ..+..+ +... ..+.+|+|||++.+....
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----- 144 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----- 144 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT-----
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC-----
Confidence 00 112222 2211 248999999999874200
Q ss_pred hhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCC---------CCCccccCCCceeeEEEeCCCC
Q 011374 321 AKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKD---------RLDPALLRPGRMDVHIHMSYCT 391 (487)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~---------~LD~ALlRpGRfd~~I~~~~p~ 391 (487)
.......+..|...++.. .+..+|+|+.... .....+. ||....+++++.+
T Consensus 145 -------------~~~~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~ 204 (350)
T 2qen_A 145 -------------SRGGKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFD 204 (350)
T ss_dssp -------------TTTTHHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCC
T ss_pred -------------ccchhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCC
Confidence 001123333333444432 2355566654321 1122232 4766789999999
Q ss_pred HHHHHHHHHHhhCcCCCCc-hHHHHHHHhhcCCCHHHHHHHH
Q 011374 392 PCGFKMLASNYLGITEHPL-FLEVEELIEKVEVTPADVAEQL 432 (487)
Q Consensus 392 ~~~~~~l~~~~l~~~~~~l-~~~i~~l~~~~~~spa~i~~~l 432 (487)
.++..+++...+...+... .+.+..+....+-.|.-+...+
T Consensus 205 ~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~~~~ 246 (350)
T 2qen_A 205 KDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFG 246 (350)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999988765433333 3455566666777777665544
No 93
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.85 E-value=1.8e-09 Score=107.98 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=67.7
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHcCCc--EEEeecCc----cc--ChHHHHHHHHHccCCeEEEEeccchhhhhh
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD--VYDLELSS----VE--GNKDLRQILIATENKSILVVEDIDCCLEMQ 315 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~--v~~l~~~~----~~--~~~~l~~l~~~~~~~sIl~IDeiD~~~~~~ 315 (487)
|.+.++.++|+||||||||+|+.++|...+.. ++.+...+ .. ....+..+........+||||+|+.+....
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAA 198 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC---
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccccccccc
Confidence 45556678999999999999999999876554 44441111 11 122233333333222299999999885422
Q ss_pred hHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccc
Q 011374 316 DRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPAL 375 (487)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~AL 375 (487)
..... .......+..++..|+++... .+..+|++|| +...|+++
T Consensus 199 ~~~s~-------------~G~v~~~lrqlL~~L~~~~k~--~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 199 GGNTT-------------SGGISRGAFDLLSDIGAMAAS--RGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHHH--HTCEEEEECC-CSSCSSSH
T ss_pred ccccc-------------cchHHHHHHHHHHHHHHHHhh--CCCEEEEEeC-CcccchhH
Confidence 11000 111245567777777766443 2367888888 66677765
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.81 E-value=5.3e-09 Score=93.42 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=46.6
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChHHHHHHHHHccCCeEEEEeccchh
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCC 311 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~~l~~l~~~~~~~sIl~IDeiD~~ 311 (487)
.+..++|+||+|+|||+|++++++.+ +..++.++...+... ....++.||+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------DAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------GGGGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------HHHhCCCEEEEeCcccc
Confidence 35679999999999999999999988 777888887766443 11346789999999875
No 95
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.79 E-value=2.2e-08 Score=97.66 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=41.0
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHHHHccCCeEEEEeccchh
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCC 311 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~~~~~sIl~IDeiD~~ 311 (487)
+++.+++||||||||||+++.|+|+.+.. .-.++.+.. ...|.....+.|++.||....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~~------~f~l~~~~~k~i~l~Ee~~~~ 160 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTNE------NFPFNDCVDKMVIWWEEGKMT 160 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTCS------SCTTGGGSSCSEEEECSCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeecccc------ccccccccccEEEEeccccch
Confidence 45678999999999999999999998765 223333221 113444556778888887654
No 96
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.79 E-value=8.7e-09 Score=96.65 Aligned_cols=120 Identities=15% Similarity=0.164 Sum_probs=75.8
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc--------C-CcEEEeecCccc---------------------ChHHHHHHHH-Hc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL--------N-FDVYDLELSSVE---------------------GNKDLRQILI-AT 297 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l--------~-~~v~~l~~~~~~---------------------~~~~l~~l~~-~~ 297 (487)
-.+|++|+||||||++|.+++... | .++|..++..+. ....+.+.+. ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 357999999999999998875443 3 667655544331 0122332221 12
Q ss_pred cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccC
Q 011374 298 ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLR 377 (487)
Q Consensus 298 ~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlR 377 (487)
..++||||||++.+++.+.. .... ..++..+.. ......-||++|+.++.||.++..
T Consensus 86 ~~~~vliIDEAq~l~~~~~~----------------~~e~----~rll~~l~~---~r~~~~~iil~tq~~~~l~~~lr~ 142 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSA----------------GSKI----PENVQWLNT---HRHQGIDIFVLTQGPKLLDQNLRT 142 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCT----------------TCCC----CHHHHGGGG---TTTTTCEEEEEESCGGGBCHHHHT
T ss_pred cCceEEEEEChhhhccCccc----------------cchh----HHHHHHHHh---cCcCCeEEEEECCCHHHHhHHHHH
Confidence 34899999999988642110 0001 124444442 122346778888889999999988
Q ss_pred CCceeeEEEeCCCCHH
Q 011374 378 PGRMDVHIHMSYCTPC 393 (487)
Q Consensus 378 pGRfd~~I~~~~p~~~ 393 (487)
|++.+++++.+...
T Consensus 143 --ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 143 --LVRKHYHIASNKMG 156 (199)
T ss_dssp --TEEEEEEEEECSSC
T ss_pred --HhheEEEEcCcccC
Confidence 99999999876443
No 97
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.77 E-value=4.2e-08 Score=121.97 Aligned_cols=135 Identities=18% Similarity=0.386 Sum_probs=96.2
Q ss_pred cccceeeCCCCCcHHHHHHH-HHHHcCCcEEEeecCcccChHHHHHHHHHc------------------cCCeEEEEecc
Q 011374 248 KRGYLLYGPPGTGKSSLIAA-MANYLNFDVYDLELSSVEGNKDLRQILIAT------------------ENKSILVVEDI 308 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~a-lA~~l~~~v~~l~~~~~~~~~~l~~l~~~~------------------~~~sIl~IDei 308 (487)
++.+||+||||||||++++. +++..+.+++.++++.-.+...+...+... .++.|+|||||
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 56899999999999988765 554457788899999988888888777531 11369999999
Q ss_pred chhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhh--ccccCCC------CceEEEEecCCCC-----CCCccc
Q 011374 309 DCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFID--GLWSSCG------DERIIIFTTNHKD-----RLDPAL 375 (487)
Q Consensus 309 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lD--gl~s~~~------~~~iiI~TTN~~~-----~LD~AL 375 (487)
+.-.. + .-..+..+.-|...+| |.+.... .+..+|+|+|+|. .|+++|
T Consensus 1384 Nmp~~--D-----------------~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf 1444 (3245)
T 3vkg_A 1384 NLPST--D-----------------KYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRF 1444 (3245)
T ss_dssp TCCCC--C-----------------TTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHH
T ss_pred CCCCc--c-----------------ccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHH
Confidence 85311 0 0112345555556665 3332211 2467899999883 589999
Q ss_pred cCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011374 376 LRPGRMDVHIHMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 376 lRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 404 (487)
+| ||.. +++++|+.++...|+..++.
T Consensus 1445 ~r--~F~v-i~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1445 LR--HAPI-LLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp HT--TCCE-EECCCCCHHHHHHHHHHHHH
T ss_pred Hh--hceE-EEeCCCCHHHHHHHHHHHHH
Confidence 99 9965 99999999999999876553
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.72 E-value=4.5e-08 Score=120.96 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=95.1
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHHHHcc-CCeEEEEeccchhhhhhhHHHhhhcccc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATE-NKSILVVEDIDCCLEMQDRLAKAKAAIP 326 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~~~-~~sIl~IDeiD~~~~~~~~~~~~~~~~~ 326 (487)
..|.+++||||||||++++++|+.+|.+++.++|+.-.+...+.++|..+. .++++++|||+.+-.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~------------- 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDE------------- 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-------------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcCh-------------
Confidence 467899999999999999999999999999999999888899999997764 579999999997632
Q ss_pred hhhhhcccCCchhhHhhH-------HHHh---------hccccCCCCceEEEEecC----CCCCCCccccCCCceeeEEE
Q 011374 327 DLYRSACNQGNRVTLSGL-------LNFI---------DGLWSSCGDERIIIFTTN----HKDRLDPALLRPGRMDVHIH 386 (487)
Q Consensus 327 ~~~~~~~~~~~~~~ls~L-------L~~l---------Dgl~s~~~~~~iiI~TTN----~~~~LD~ALlRpGRfd~~I~ 386 (487)
.+++.+ ++.+ +|-.-.......|++|.| ....|+++|.+ || +.|.
T Consensus 712 ------------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~ 776 (2695)
T 4akg_A 712 ------------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFS 776 (2695)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEE
T ss_pred ------------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEE
Confidence 223332 2222 111001112345778888 34679999998 88 6899
Q ss_pred eCCCCHHHHHHHHHH
Q 011374 387 MSYCTPCGFKMLASN 401 (487)
Q Consensus 387 ~~~p~~~~~~~l~~~ 401 (487)
|.+|+.+...++.-.
T Consensus 777 m~~Pd~~~i~ei~l~ 791 (2695)
T 4akg_A 777 MKSPQSGTIAEMILQ 791 (2695)
T ss_dssp CCCCCHHHHHHHHHH
T ss_pred eeCCCHHHHHHHHHH
Confidence 999999988777533
No 99
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.56 E-value=7.8e-07 Score=91.61 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=97.2
Q ss_pred ccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC---CcEEEeecCcccChHH
Q 011374 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSSVEGNKD 289 (487)
Q Consensus 213 fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~---~~v~~l~~~~~~~~~~ 289 (487)
++.++|.....+.+.+.+.... .....+|++|++||||+++|+++..... .+++.++|+.+..+--
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 3456666666666666555321 2245689999999999999999998874 6899999998743222
Q ss_pred HHHHHH-----------------HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc
Q 011374 290 LRQILI-----------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW 352 (487)
Q Consensus 290 l~~l~~-----------------~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~ 352 (487)
-.++|. .....++||||||+.+- ......||..++.-.
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~-------------------------~~~q~~Ll~~l~~~~ 259 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELS-------------------------LEAQAKLLRVIESGK 259 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCC-------------------------HHHHHHHHHHHHHSE
T ss_pred HHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCC-------------------------HHHHHHHHHHHhcCc
Confidence 223332 11245799999999773 344556777765311
Q ss_pred -cCCC------CceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHhhC
Q 011374 353 -SSCG------DERIIIFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCTP--CGFKMLASNYLG 404 (487)
Q Consensus 353 -s~~~------~~~iiI~TTN~~-------~~LD~ALlRpGRf-d~~I~~~~p~~--~~~~~l~~~~l~ 404 (487)
...| -++-||+|||.. ..+.+.|.- |+ ...|++|+... ++...|+..++.
T Consensus 260 ~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 326 (387)
T 1ny5_A 260 FYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLK 326 (387)
T ss_dssp ECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred EEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHH
Confidence 1111 135688888863 334455543 44 35577776653 677777777764
No 100
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.55 E-value=1.4e-06 Score=89.04 Aligned_cols=152 Identities=16% Similarity=0.207 Sum_probs=97.3
Q ss_pred ccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCc--EEEeecCcccChHHHHH
Q 011374 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD--VYDLELSSVEGNKDLRQ 292 (487)
Q Consensus 215 ~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~--v~~l~~~~~~~~~~l~~ 292 (487)
.++|......++.+.+.... .....+|++|++||||+.+|+++....+.. ++.++|+.+..+..-..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 45666666666655554322 223569999999999999999999887544 99999998854433344
Q ss_pred HHH-----------------HccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhcc-ccC
Q 011374 293 ILI-----------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGL-WSS 354 (487)
Q Consensus 293 l~~-----------------~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl-~s~ 354 (487)
+|. ......+||||||+.+- ......||..++.- ...
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~-------------------------~~~Q~~Ll~~l~~~~~~~ 253 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELD-------------------------QRVQAKLLRVLETGSFTR 253 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSC-------------------------HHHHHHHHHHHHHSEECC
T ss_pred hcCccccccCCcccccCChHhhcCCCeEEecChhhCC-------------------------HHHHHHHHHHHHhCCccc
Confidence 431 12345789999999773 34456677777532 111
Q ss_pred CCC------ceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCCH--HHHHHHHHHhhC
Q 011374 355 CGD------ERIIIFTTNHK-------DRLDPALLRPGRMD-VHIHMSYCTP--CGFKMLASNYLG 404 (487)
Q Consensus 355 ~~~------~~iiI~TTN~~-------~~LD~ALlRpGRfd-~~I~~~~p~~--~~~~~l~~~~l~ 404 (487)
.|. .+-+|+|||.. ..+.+.|.. |+. ..|++|+... ++...|+..++.
T Consensus 254 ~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 317 (368)
T 3dzd_A 254 LGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLK 317 (368)
T ss_dssp BTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHH
T ss_pred CCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHH
Confidence 111 24577888742 233444544 443 3688888776 677888877774
No 101
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.47 E-value=9.2e-08 Score=99.98 Aligned_cols=141 Identities=17% Similarity=0.100 Sum_probs=82.5
Q ss_pred cccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHH-HHHcCCcEEEeecCcccChHHHH---
Q 011374 216 LAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAM-ANYLNFDVYDLELSSVEGNKDLR--- 291 (487)
Q Consensus 216 l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~al-A~~l~~~v~~l~~~~~~~~~~l~--- 291 (487)
|.|.+.+|+.|+-.+. .+-.. ....-++||.|+||| ||+|++++ ++.+...+|...... +...|.
T Consensus 215 I~G~e~vK~aLll~L~---GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~s--s~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF---SCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRT--ELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHHT---TCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGC--CHHHHSEEE
T ss_pred cCCCHHHHHHHHHHHc---CCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCC--CccCceEEE
Confidence 6777777777654442 10000 011126999999999 99999999 877765555422211 111111
Q ss_pred ----H-----HHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccc-c----CCCC
Q 011374 292 ----Q-----ILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLW-S----SCGD 357 (487)
Q Consensus 292 ----~-----l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~-s----~~~~ 357 (487)
. -........|+|||||+.+ ...+++.|+..|+.-. + .-+.
T Consensus 284 r~~tG~~~~~G~l~LAdgGvl~lDEIn~~-------------------------~~~~qsaLlEaMEe~~VtI~G~~lpa 338 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLADGGILAVDHLEGA-------------------------PEPHRWALMEAMDKGTVTVDGIALNA 338 (506)
T ss_dssp EESSSEEEEECHHHHTTTSEEEEECCTTC-------------------------CHHHHHHHHHHHHHSEEEETTEEEEC
T ss_pred EcCCCcccCCCeeEEcCCCeeehHhhhhC-------------------------CHHHHHHHHHHHhCCcEEECCEEcCC
Confidence 0 0011234689999999865 3456667777775211 0 1123
Q ss_pred ceEEEEecCCCC-----------CCCccccCCCceeeEEE-eCCCCHHH
Q 011374 358 ERIIIFTTNHKD-----------RLDPALLRPGRMDVHIH-MSYCTPCG 394 (487)
Q Consensus 358 ~~iiI~TTN~~~-----------~LD~ALlRpGRfd~~I~-~~~p~~~~ 394 (487)
...||+|+|..+ .|+++++. |||+.+. +++|+.+.
T Consensus 339 rf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 339 RCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp CCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred CeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 468999999875 78899999 9988654 47776654
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.37 E-value=1.5e-06 Score=108.41 Aligned_cols=129 Identities=18% Similarity=0.124 Sum_probs=95.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHHHHcc-CCeEEEEeccchhhhhhhHHHhhhcccc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATE-NKSILVVEDIDCCLEMQDRLAKAKAAIP 326 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~~~-~~sIl~IDeiD~~~~~~~~~~~~~~~~~ 326 (487)
..|..+.||+|||||.+++.+|..+|.+++.++|+.-.+...+.++|..+. ..+..++|||+.+-
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~-------------- 669 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLE-------------- 669 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSC--------------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCC--------------
Confidence 356689999999999999999999999999999999888888888887764 58899999998762
Q ss_pred hhhhhcccCCchhhHhhHHHHhh-----------------ccccCCCCceEEEEecCC----CCCCCccccCCCceeeEE
Q 011374 327 DLYRSACNQGNRVTLSGLLNFID-----------------GLWSSCGDERIIIFTTNH----KDRLDPALLRPGRMDVHI 385 (487)
Q Consensus 327 ~~~~~~~~~~~~~~ls~LL~~lD-----------------gl~s~~~~~~iiI~TTN~----~~~LD~ALlRpGRfd~~I 385 (487)
..++|.+...+. |-.-.-..+.-|++|.|. ...|+++|.. || +.|
T Consensus 670 -----------~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v 735 (3245)
T 3vkg_A 670 -----------ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSM 735 (3245)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEE
T ss_pred -----------HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEE
Confidence 222333222221 211011123567888883 4689999998 88 669
Q ss_pred EeCCCCHHHHHHHHHHhhC
Q 011374 386 HMSYCTPCGFKMLASNYLG 404 (487)
Q Consensus 386 ~~~~p~~~~~~~l~~~~l~ 404 (487)
.|.+|+.+...++.-.-.+
T Consensus 736 ~m~~Pd~~~i~ei~L~s~G 754 (3245)
T 3vkg_A 736 AMIKPDREMIAQVMLYSQG 754 (3245)
T ss_dssp ECCSCCHHHHHHHHHHTTT
T ss_pred EEeCCCHHHHHHHHHHHcc
Confidence 9999999988877644433
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.24 E-value=1.6e-06 Score=104.35 Aligned_cols=111 Identities=13% Similarity=0.150 Sum_probs=70.1
Q ss_pred CCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc---------------------cChHHHHHHHHH---c
Q 011374 245 KAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV---------------------EGNKDLRQILIA---T 297 (487)
Q Consensus 245 ~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~---------------------~~~~~l~~l~~~---~ 297 (487)
++.+++++||||||||||+||.++|.+. |..+..+++... .....+.+.+.. .
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 7778899999999999999999998775 444554544422 111223333332 3
Q ss_pred cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCC--chhhHhhHHHHhhccccCCCCceEEEEecCCC
Q 011374 298 ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG--NRVTLSGLLNFIDGLWSSCGDERIIIFTTNHK 368 (487)
Q Consensus 298 ~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~ 368 (487)
..+++||||+++.+.+.....+.... +.. ....++++|..|++..... .++|++||..
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~----------~~~~~~~R~lsqlL~~L~~~~~~~---~v~VI~tNq~ 1563 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGD----------SHMGLAARMMSQAMRKLAGNLKQS---NTLLIFINQI 1563 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTC----------CCTTHHHHHHHHHHHHHHHHHHTT---TCEEEEEECE
T ss_pred CCCCEEEEcChhHhcccccccccccc----------cccchHHHHHHHHHHHHHHHHHhC---CcEEEEEccc
Confidence 67899999999988753321110000 011 2456788999999886543 3666677753
No 104
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.18 E-value=4.3e-06 Score=76.64 Aligned_cols=27 Identities=26% Similarity=0.547 Sum_probs=23.5
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEE
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVY 277 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~ 277 (487)
+.|.||+|+|||||++.|++.++..+.
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 678999999999999999999865443
No 105
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.12 E-value=1.6e-05 Score=79.84 Aligned_cols=124 Identities=16% Similarity=0.154 Sum_probs=82.9
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc---CC-c--EEEeecCcccChHHHHHHHHHc------cCCeEEEEeccch-hhh
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL---NF-D--VYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDC-CLE 313 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l---~~-~--v~~l~~~~~~~~~~l~~l~~~~------~~~sIl~IDeiD~-~~~ 313 (487)
....||||||+|+||++.++++++.+ ++ + ++.++ . ..++++++..+ ..+-|++|||+|. +.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~- 90 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID--P---NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN- 90 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC--T---TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC-
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec--C---CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC-
Confidence 45689999999999999999998876 33 2 23333 2 23445554333 3578999999986 41
Q ss_pred hhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCC------CCCccccCCCceeeEEEe
Q 011374 314 MQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKD------RLDPALLRPGRMDVHIHM 387 (487)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~------~LD~ALlRpGRfd~~I~~ 387 (487)
....+.|+..++.. +...++|++|+.++ ++-+++.. |. ..+.+
T Consensus 91 ------------------------~~~~~aLl~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~ 139 (343)
T 1jr3_D 91 ------------------------AAINEQLLTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTC 139 (343)
T ss_dssp ------------------------TTHHHHHHHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEE
T ss_pred ------------------------hHHHHHHHHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEe
Confidence 23456677777753 23456666555533 45667776 54 57999
Q ss_pred CCCCHHHHHHHHHHhhCcCC
Q 011374 388 SYCTPCGFKMLASNYLGITE 407 (487)
Q Consensus 388 ~~p~~~~~~~l~~~~l~~~~ 407 (487)
..++..+....++..+...+
T Consensus 140 ~~l~~~~l~~~l~~~~~~~g 159 (343)
T 1jr3_D 140 QTPEQAQLPRWVAARAKQLN 159 (343)
T ss_dssp CCCCTTHHHHHHHHHHHHTT
T ss_pred eCCCHHHHHHHHHHHHHHcC
Confidence 99999988887777765433
No 106
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.98 E-value=0.00015 Score=78.07 Aligned_cols=168 Identities=18% Similarity=0.188 Sum_probs=92.2
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHH-------cCCcEEEeecC
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANY-------LNFDVYDLELS 282 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~-------l~~~v~~l~~~ 282 (487)
|.....++|.+...+.|.+.+.. +....+-++|+||+|+|||+||..+++. +...++.++++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~ 188 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSK-----------LKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 188 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTT-----------STTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEE
T ss_pred CCCCCeecccHHHHHHHHHHHhc-----------ccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECC
Confidence 44456688888887777665531 0122456899999999999999988642 22235555544
Q ss_pred cccCh---------------------------HH----HHHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhh
Q 011374 283 SVEGN---------------------------KD----LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRS 331 (487)
Q Consensus 283 ~~~~~---------------------------~~----l~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~ 331 (487)
..... .. ++..+.....+.+|||||++...
T Consensus 189 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~------------------- 249 (591)
T 1z6t_A 189 KQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW------------------- 249 (591)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-------------------
T ss_pred CCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-------------------
Confidence 32100 11 11222222257899999997421
Q ss_pred cccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEe-CCCCHHHHHHHHHHhhCcCCCCc
Q 011374 332 ACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHM-SYCTPCGFKMLASNYLGITEHPL 410 (487)
Q Consensus 332 ~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~-~~p~~~~~~~l~~~~l~~~~~~l 410 (487)
.+.. + +.+..||+||..+..... .. |.. ..+.. +..+.++..+++..++.......
T Consensus 250 ------------~l~~---l----~~~~~ilvTsR~~~~~~~--~~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~ 306 (591)
T 1z6t_A 250 ------------VLKA---F----DSQCQILLTTRDKSVTDS--VM-GPK-YVVPVESSLGKEKGLEILSLFVNMKKADL 306 (591)
T ss_dssp ------------HHHT---T----CSSCEEEEEESCGGGGTT--CC-SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGS
T ss_pred ------------HHHH---h----cCCCeEEEECCCcHHHHh--cC-CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccc
Confidence 1111 1 122456667765432111 11 222 23332 46788888899988876422222
Q ss_pred hHHHHHHHhhcCCCHHHHHH
Q 011374 411 FLEVEELIEKVEVTPADVAE 430 (487)
Q Consensus 411 ~~~i~~l~~~~~~spa~i~~ 430 (487)
.+.+..++...+.-|.-|..
T Consensus 307 ~~~~~~i~~~~~G~PLal~~ 326 (591)
T 1z6t_A 307 PEQAHSIIKECKGSPLVVSL 326 (591)
T ss_dssp CTHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHhCCCcHHHHH
Confidence 34555666666666655543
No 107
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.80 E-value=8.2e-05 Score=69.09 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=31.6
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~ 283 (487)
|.+.+.-++|+||||+|||+|+..+|...+..++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4566666899999999999999999985566676666544
No 108
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.78 E-value=0.00058 Score=79.27 Aligned_cols=167 Identities=16% Similarity=0.154 Sum_probs=95.8
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc-------CCcEEEeec
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-------NFDVYDLEL 281 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l-------~~~v~~l~~ 281 (487)
.|.....++|.++..++|.+.|... ....+-+.|+|++|+|||+||+.+++.. ...++.+++
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 4556677899988888887765311 1223568899999999999999988752 223455665
Q ss_pred CcccC---------------------------hHHHHHHHHHc----cCCeEEEEeccchhhhhhhHHHhhhcccchhhh
Q 011374 282 SSVEG---------------------------NKDLRQILIAT----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYR 330 (487)
Q Consensus 282 ~~~~~---------------------------~~~l~~l~~~~----~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~ 330 (487)
+.... ...+...+... .++.+|||||++....
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~----------------- 250 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWV----------------- 250 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHH-----------------
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHH-----------------
Confidence 54211 11222222211 3378999999984311
Q ss_pred hcccCCchhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCC-CCHHHHHHHHHHhhCcCCCC
Q 011374 331 SACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSY-CTPCGFKMLASNYLGITEHP 409 (487)
Q Consensus 331 ~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~-p~~~~~~~l~~~~l~~~~~~ 409 (487)
++.+ +.+.-||+||..+.-.... . .....+.++. .+.++..+++..+.......
T Consensus 251 -----------------~~~~----~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~ 305 (1249)
T 3sfz_A 251 -----------------LKAF----DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKED 305 (1249)
T ss_dssp -----------------HTTT----CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTT
T ss_pred -----------------HHhh----cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhh
Confidence 1111 1123566677654332211 1 1234577775 88888888888877544333
Q ss_pred chHHHHHHHhhcCCCHHHH
Q 011374 410 LFLEVEELIEKVEVTPADV 428 (487)
Q Consensus 410 l~~~i~~l~~~~~~spa~i 428 (487)
+.+...++++..+.-|-.|
T Consensus 306 ~~~~~~~i~~~~~glPLal 324 (1249)
T 3sfz_A 306 LPAEAHSIIKECKGSPLVV 324 (1249)
T ss_dssp CCTHHHHHHHHTTTCHHHH
T ss_pred CcHHHHHHHHHhCCCHHHH
Confidence 3444555555555444433
No 109
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.68 E-value=1.9e-05 Score=71.72 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=29.6
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
++.++|.|||||||||+++.+|..+++++++.|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457899999999999999999999999998653
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.66 E-value=0.00021 Score=66.59 Aligned_cols=29 Identities=28% Similarity=0.201 Sum_probs=24.0
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
|.+.+..++|+||||+|||+|++.+|..+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34555668999999999999999999654
No 111
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.62 E-value=0.0002 Score=67.58 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=30.3
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHH--c-------CCcEEEeecCc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANY--L-------NFDVYDLELSS 283 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~--l-------~~~v~~l~~~~ 283 (487)
|++.+.-++|+||||+|||+|+..+|.. + +..++.++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4556667899999999999999999985 3 34566665544
No 112
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.61 E-value=2.9e-05 Score=71.82 Aligned_cols=34 Identities=35% Similarity=0.376 Sum_probs=29.9
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
..+.++|.|||||||||+++++|..+++++++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3457899999999999999999999999988654
No 113
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.60 E-value=4.2e-05 Score=68.89 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=29.8
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~ 282 (487)
+-++|.||||+||||+++++|..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4588999999999999999999999888876543
No 114
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.59 E-value=5.1e-05 Score=67.60 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=28.6
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~ 281 (487)
-++|.||||+||||+++.+|..+++++++.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 47899999999999999999999999887653
No 115
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.59 E-value=0.00017 Score=75.59 Aligned_cols=68 Identities=21% Similarity=0.183 Sum_probs=39.2
Q ss_pred CCceecccCCCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CC-c
Q 011374 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NF-D 275 (487)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~-~ 275 (487)
..|.+ ...|.+|+.| .+++++.+. .+..++.. ..+.++|.||||||||+++.+++..+ +. .
T Consensus 12 ~~~~~--~~~p~~~~~L--n~~Q~~av~-~~~~~i~~----------~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~ 76 (459)
T 3upu_A 12 SGLVP--RGSHMTFDDL--TEGQKNAFN-IVMKAIKE----------KKHHVTINGPAGTGATTLTKFIIEALISTGETG 76 (459)
T ss_dssp -----------CCSSCC--CHHHHHHHH-HHHHHHHS----------SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCC
T ss_pred CCCcc--ccCCCccccC--CHHHHHHHH-HHHHHHhc----------CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCce
Confidence 45654 4567788876 455555443 33334432 12378999999999999999999887 33 4
Q ss_pred EEEeecC
Q 011374 276 VYDLELS 282 (487)
Q Consensus 276 v~~l~~~ 282 (487)
++.+..+
T Consensus 77 il~~a~T 83 (459)
T 3upu_A 77 IILAAPT 83 (459)
T ss_dssp EEEEESS
T ss_pred EEEecCc
Confidence 5555443
No 116
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.55 E-value=3.5e-05 Score=70.22 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=29.3
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
..+.-++|.||||+||||+++.+|..+++++++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 3455689999999999999999999999888763
No 117
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.50 E-value=0.00014 Score=73.86 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=46.2
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCccc---------------------ChHHHHHHHH---H
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE---------------------GNKDLRQILI---A 296 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~---------------------~~~~l~~l~~---~ 296 (487)
|++.+.-++|+||||+|||+|+..+|..+ +..++.++..... +...+..++. .
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45555668999999999999999998775 5556556554321 1122222222 2
Q ss_pred ccCCeEEEEeccchhhh
Q 011374 297 TENKSILVVEDIDCCLE 313 (487)
Q Consensus 297 ~~~~sIl~IDeiD~~~~ 313 (487)
...+.+++||.+..+..
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 24578999999988764
No 118
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.50 E-value=0.00016 Score=72.36 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=31.2
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---------CCcEEEeecCc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELSS 283 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---------~~~v~~l~~~~ 283 (487)
|.+.+.-++|+||||+|||+|+..+|... +..++.++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45666678999999999999999999875 45566666554
No 119
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.47 E-value=5.6e-05 Score=68.59 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=28.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
..++|.|+||+||||+++.+|..+++++++.|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 34899999999999999999999999988654
No 120
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.47 E-value=5.3e-05 Score=68.58 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=28.6
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
++.++|.||||+||||+++++|..+++.+++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45689999999999999999999999888755
No 121
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.47 E-value=5.1e-05 Score=68.47 Aligned_cols=30 Identities=33% Similarity=0.456 Sum_probs=27.4
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
.++|.||||+||||++++||..+++++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 588999999999999999999999988764
No 122
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.45 E-value=6.3e-05 Score=67.39 Aligned_cols=30 Identities=43% Similarity=0.758 Sum_probs=26.9
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
..+.|.||||+||||+++.+|..++..+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 468999999999999999999999987664
No 123
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.44 E-value=6.1e-05 Score=67.35 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=29.0
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
..++|.|+|||||||+++.+|..+++++++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46899999999999999999999999998653
No 124
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.44 E-value=0.00018 Score=72.93 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=45.6
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCccc---------------------ChHHHHHHHHH---
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE---------------------GNKDLRQILIA--- 296 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~---------------------~~~~l~~l~~~--- 296 (487)
|.+.++-++|+||||+|||+|+..+|... +..+..++...-. +...+..++..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45556669999999999999999888654 4555555543311 11222222221
Q ss_pred ccCCeEEEEeccchhh
Q 011374 297 TENKSILVVEDIDCCL 312 (487)
Q Consensus 297 ~~~~sIl~IDeiD~~~ 312 (487)
...+.+||||++..+.
T Consensus 137 ~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 137 SGALDIIVIDSVAALV 152 (349)
T ss_dssp TTCCSEEEEECGGGCC
T ss_pred cCCCCEEEEcChHhhc
Confidence 2358899999999886
No 125
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.43 E-value=0.00067 Score=64.05 Aligned_cols=26 Identities=35% Similarity=0.426 Sum_probs=22.6
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHH
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMA 269 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA 269 (487)
|++.+.-+.|.||+|+|||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45556678999999999999999998
No 126
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.43 E-value=0.00038 Score=70.20 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=30.5
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---------CCcEEEeecCc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELSS 283 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---------~~~v~~l~~~~ 283 (487)
|.+.+.-++|+||||+|||+|+..+|... +..++.++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45666668999999999999999999863 44566665544
No 127
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.41 E-value=6.8e-05 Score=68.46 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=28.6
Q ss_pred cccceeeCCCCCcHHHHHHHHHHH-cCCcEEEee
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANY-LNFDVYDLE 280 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~-l~~~v~~l~ 280 (487)
+..++|.|+|||||||+++.+|.. +++++++++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 345899999999999999999999 788887654
No 128
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.41 E-value=0.00032 Score=68.27 Aligned_cols=29 Identities=28% Similarity=0.239 Sum_probs=23.8
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
|.+.+.-++|+||||+|||+|+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34455668999999999999999998754
No 129
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.39 E-value=0.00018 Score=73.07 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=48.3
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCccc---------------------ChHHHHHHHHH---
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE---------------------GNKDLRQILIA--- 296 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~---------------------~~~~l~~l~~~--- 296 (487)
|.+.++.++|+||||+|||+|+..+|..+ +..+..+++.... +...+..++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46666779999999999999999988764 5566666653211 12233333332
Q ss_pred ccCCeEEEEeccchhhh
Q 011374 297 TENKSILVVEDIDCCLE 313 (487)
Q Consensus 297 ~~~~sIl~IDeiD~~~~ 313 (487)
.....+||||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 24578999999998863
No 130
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.38 E-value=0.00032 Score=71.06 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=25.4
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
|++.+.-+.|+||||+|||+|+..+|...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45666668999999999999999999887
No 131
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.37 E-value=0.0052 Score=65.74 Aligned_cols=163 Identities=13% Similarity=0.068 Sum_probs=90.2
Q ss_pred ccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHH----HcC--Cc-EEEeecCccc----
Q 011374 217 AMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN----YLN--FD-VYDLELSSVE---- 285 (487)
Q Consensus 217 ~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~----~l~--~~-v~~l~~~~~~---- 285 (487)
+|.++.+++|.+.|..- +....+.+.++|++|+|||+||+.+++ ... ++ .+.++.+...
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 38888888888777421 112246688999999999999999997 232 22 2233433310
Q ss_pred --------------------------ChHHHHHHHHHc--cC-CeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCC
Q 011374 286 --------------------------GNKDLRQILIAT--EN-KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (487)
Q Consensus 286 --------------------------~~~~l~~l~~~~--~~-~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (487)
+...+...+... .+ +.+|||||++..-.
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~----------------------- 257 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET----------------------- 257 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH-----------------------
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh-----------------------
Confidence 001122233221 33 78999999985311
Q ss_pred chhhHhhHHHHhhccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCC-CchH-HH
Q 011374 337 NRVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEH-PLFL-EV 414 (487)
Q Consensus 337 ~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~-~l~~-~i 414 (487)
. .+ .+. ++ .-||+||....... ..|-.+..+.++..+.++-.+|+..+...... +... ..
T Consensus 258 --~---~~----~~~----~g-s~ilvTTR~~~v~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 319 (549)
T 2a5y_B 258 --I---RW----AQE----LR-LRCLVTTRDVEISN----AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVL 319 (549)
T ss_dssp --H---HH----HHH----TT-CEEEEEESBGGGGG----GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHH
T ss_pred --h---cc----ccc----CC-CEEEEEcCCHHHHH----HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHH
Confidence 0 11 111 11 34566665432111 11113456899999999999999987543221 2222 34
Q ss_pred HHHHhhcCCCHHHHHH
Q 011374 415 EELIEKVEVTPADVAE 430 (487)
Q Consensus 415 ~~l~~~~~~spa~i~~ 430 (487)
.+++...+..|-.|.-
T Consensus 320 ~~I~~~c~GlPLAl~~ 335 (549)
T 2a5y_B 320 NKTIELSSGNPATLMM 335 (549)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCChHHHHH
Confidence 4555555666655543
No 132
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.36 E-value=8.3e-05 Score=68.34 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=22.0
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc---CCcEEE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYD 278 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~ 278 (487)
.-++++||||+|||+++..++..+ +..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~ 36 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAV 36 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 357899999999999997666543 454443
No 133
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.36 E-value=0.00055 Score=69.77 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=46.8
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCccc---------------------ChHHHHHHHHHc--
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE---------------------GNKDLRQILIAT-- 297 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~---------------------~~~~l~~l~~~~-- 297 (487)
|.+.++.++|+||||+|||+|+..+|... +..+..+++..-. +...+...+...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45566678999999999999999888764 5566666554321 112333333322
Q ss_pred -cCCeEEEEeccchhh
Q 011374 298 -ENKSILVVEDIDCCL 312 (487)
Q Consensus 298 -~~~sIl~IDeiD~~~ 312 (487)
....+||||.+..+.
T Consensus 150 ~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALT 165 (366)
T ss_dssp TTCCSEEEEECTTTCC
T ss_pred cCCCCEEEEeChHHhc
Confidence 457899999999886
No 134
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.35 E-value=8.4e-05 Score=66.45 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=28.2
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
+.++|.|+||+||||+++.+|..+++++++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 35889999999999999999999999887643
No 135
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.35 E-value=0.00011 Score=67.72 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=28.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
.-++|.||||+||||+++.+|..+++++++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 45889999999999999999999999887653
No 136
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.32 E-value=0.00011 Score=70.79 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=28.9
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~ 281 (487)
-++|.||||+||||++++||..+++.++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999999887764
No 137
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.31 E-value=9.7e-05 Score=67.09 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=27.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
.-++|.|+||+||||+++.+|..+++++++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 4588999999999999999999999887654
No 138
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.30 E-value=0.00011 Score=65.30 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=26.0
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
-++|.||||+||||+++.+ ..++++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 9999988764
No 139
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.29 E-value=9.7e-05 Score=66.99 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=28.9
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
.++-++|.|+||+||||+++.+|..+++.+++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 345689999999999999999999999887765
No 140
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.28 E-value=0.00015 Score=66.97 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=28.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
++-++|.||||+||||+++.||..+++.+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 346899999999999999999999998777543
No 141
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.27 E-value=0.00013 Score=65.01 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=27.3
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
++|.|+||+||||+++.+|..+++++++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 789999999999999999999999888643
No 142
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.26 E-value=0.00033 Score=84.62 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=51.2
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccC------------------------hHHHHHHHHH
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG------------------------NKDLRQILIA 296 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~------------------------~~~l~~l~~~ 296 (487)
|.+.++.+||+||||||||+|+.+++.+. |...+.+++..... ...+...+..
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 46777889999999999999999987654 66777776665311 1223334455
Q ss_pred ccCCeEEEEeccchhhh
Q 011374 297 TENKSILVVEDIDCCLE 313 (487)
Q Consensus 297 ~~~~sIl~IDeiD~~~~ 313 (487)
...+.+|+||++..+..
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 56799999999998854
No 143
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.26 E-value=0.00011 Score=69.02 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=27.8
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
..++|.||||+||||+++.||..+++++++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4588999999999999999999999888765
No 144
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.25 E-value=0.00012 Score=66.78 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=28.8
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
+.-++|.||||+||||+++.+|..+++++++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 346889999999999999999999999887654
No 145
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.24 E-value=0.00011 Score=66.64 Aligned_cols=31 Identities=29% Similarity=0.614 Sum_probs=27.1
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
..++|.||||+||||+++.+|..+++++++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 3588999999999999999999999877644
No 146
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.22 E-value=0.00012 Score=66.31 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=26.0
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcC-----CcEEE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLN-----FDVYD 278 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~-----~~v~~ 278 (487)
.-++|.||||+||||+++.+|..++ +++++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 4588999999999999999999998 66653
No 147
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.22 E-value=0.00013 Score=66.76 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=28.6
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
+.-++|.||||+||||+++.+|..+++.+++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 356889999999999999999999998777553
No 148
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.22 E-value=0.00047 Score=74.46 Aligned_cols=34 Identities=35% Similarity=0.409 Sum_probs=26.8
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~ 282 (487)
+.+++.||||||||+++.+++..+ +..+..+..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT 241 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPT 241 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCc
Confidence 568899999999999999998865 5666655433
No 149
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.22 E-value=0.00016 Score=67.45 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=26.8
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
++|.||||+||||+++.+|..+++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 68899999999999999999999888765
No 150
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.21 E-value=8.9e-05 Score=66.53 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=24.2
Q ss_pred ccceeeCCCCCcHHHHHHHHHH-HcCCcEE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMAN-YLNFDVY 277 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~-~l~~~v~ 277 (487)
.-++|.||||+||||+++.++. .+++.++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4588999999999999999999 5665444
No 151
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.20 E-value=0.00016 Score=67.69 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=27.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
.-++|.||||+||||+++.+|..+++++++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4588999999999999999999999887754
No 152
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.20 E-value=0.0018 Score=67.77 Aligned_cols=122 Identities=17% Similarity=0.153 Sum_probs=79.1
Q ss_pred CeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCC------------
Q 011374 300 KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNH------------ 367 (487)
Q Consensus 300 ~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~------------ 367 (487)
+.|++|||+|.+- ....+.|+..|+.- ... ++|++||.
T Consensus 296 ~~VliIDEa~~l~-------------------------~~a~~aLlk~lEe~----~~~-~~il~tn~~~~~i~~~~~~~ 345 (456)
T 2c9o_A 296 PGVLFVDEVHMLD-------------------------IECFTYLHRALESS----IAP-IVIFASNRGNCVIRGTEDIT 345 (456)
T ss_dssp ECEEEEESGGGCB-------------------------HHHHHHHHHHTTST----TCC-EEEEEECCSEEECBTTSSCE
T ss_pred ceEEEEechhhcC-------------------------HHHHHHHHHHhhcc----CCC-EEEEecCCcccccccccccc
Confidence 4699999999772 35677788888753 233 55555533
Q ss_pred -CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhcCCCHHHHHHHHhc-cCCHHHHHHHH
Q 011374 368 -KDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKVEVTPADVAEQLMR-DEVPKIALSGL 445 (487)
Q Consensus 368 -~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~~~l~~-~~~~~~al~~l 445 (487)
++.|+|.+++ ||.. +.|++++.++...+++..+...+..+.++...++. . .. .+++..|+..+
T Consensus 346 ~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~----------~--~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 346 SPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLG----------E--IGTKTTLRYSVQLL 410 (456)
T ss_dssp EETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH----------H--HHHHSCHHHHHHTH
T ss_pred ccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH----------H--HccCCCHHHHHHHH
Confidence 7889999999 9976 69999999999999988764333333333222221 1 11 36788888877
Q ss_pred HHHHHHHHhhccccccchHHH
Q 011374 446 IQFLQIKKRETGESKATEAEE 466 (487)
Q Consensus 446 ~~~l~~~~~~~~~~~~~~~~~ 466 (487)
..+...............+..
T Consensus 411 ~~a~~~A~~~~~~~v~~~~v~ 431 (456)
T 2c9o_A 411 TPANLLAKINGKDSIEKEHVE 431 (456)
T ss_dssp HHHHHHHHHTTCSSBCHHHHH
T ss_pred HHHHHHHhhcCCCccCHHHHH
Confidence 776555554444444433333
No 153
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.20 E-value=0.00038 Score=68.46 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=27.9
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~ 281 (487)
.+.-++|.||||+||||++++++..++..++.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 34568899999999999999999998544555554
No 154
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.19 E-value=0.00014 Score=68.51 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=28.3
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
+.-++|.||||+||||+++.||..+++.+++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 45689999999999999999999999887754
No 155
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.18 E-value=0.00017 Score=67.11 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=26.6
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
++|.||||+||||+++.+|..+++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 68899999999999999999999888765
No 156
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.16 E-value=0.0016 Score=61.25 Aligned_cols=38 Identities=26% Similarity=0.197 Sum_probs=27.7
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHH----cCCcEEEeec
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANY----LNFDVYDLEL 281 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~----l~~~v~~l~~ 281 (487)
|.+.+.-++++|+||+|||+++..+|.. .+.+++.+++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4566666899999999999999876543 2556655544
No 157
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.15 E-value=0.00015 Score=65.90 Aligned_cols=37 Identities=30% Similarity=0.358 Sum_probs=28.9
Q ss_pred CCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011374 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (487)
Q Consensus 245 ~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~ 281 (487)
...+.-+.|.||||+||||++++||..++...+.++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 3445568899999999999999999987666555543
No 158
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.14 E-value=0.00023 Score=63.93 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=26.8
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
..+.|.||||+||||+++.++..+|..+++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 4588999999999999999999998776653
No 159
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.12 E-value=0.00022 Score=65.69 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=28.1
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
.-|+|.||||+||||+++.+|..+++.+++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 35889999999999999999999998877654
No 160
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.12 E-value=0.00086 Score=69.14 Aligned_cols=28 Identities=32% Similarity=0.238 Sum_probs=22.5
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHH
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
|++...-++|+||||||||+|+..+|-.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4555566899999999999999977643
No 161
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.12 E-value=0.00023 Score=67.43 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=27.7
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
..++|.|+||+||||+++.||..+++.+++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4589999999999999999999999887754
No 162
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.11 E-value=0.00033 Score=63.24 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=29.1
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~ 280 (487)
+.-+.|.|++|+||||+++.++..+ |++++.++
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 3457899999999999999999998 88888776
No 163
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.11 E-value=0.0011 Score=66.11 Aligned_cols=68 Identities=12% Similarity=0.075 Sum_probs=42.0
Q ss_pred CCCcccceeeCCCCCcHHHHHHHHHHHc-----CCcEEEeecCcc---------------------cChHHH-HHHHHH-
Q 011374 245 KAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELSSV---------------------EGNKDL-RQILIA- 296 (487)
Q Consensus 245 ~~~~rg~LL~GPPGtGKTsLa~alA~~l-----~~~v~~l~~~~~---------------------~~~~~l-~~l~~~- 296 (487)
.+.+ -++++||||+|||+|+..++... +..+..++...- .+...+ ..+...
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 4544 47899999999999977655443 445555554331 111222 222222
Q ss_pred ----ccCCeEEEEeccchhhh
Q 011374 297 ----TENKSILVVEDIDCCLE 313 (487)
Q Consensus 297 ----~~~~sIl~IDeiD~~~~ 313 (487)
...+.+||||-|..+..
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 24589999999998863
No 164
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.10 E-value=0.0002 Score=64.60 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=22.7
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~ 277 (487)
.-++|.|+||+||||+++.+|..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45889999999999999999999999877
No 165
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.09 E-value=0.00037 Score=66.97 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=30.3
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV 284 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~ 284 (487)
.+..++|.||||+||||+++.++..++..++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34568999999999999999999999865555555443
No 166
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.09 E-value=0.0008 Score=66.90 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=23.9
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHH
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
|.+.+.-++|+||||+|||+|+..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4566666899999999999999999875
No 167
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.07 E-value=0.00016 Score=67.85 Aligned_cols=31 Identities=13% Similarity=0.256 Sum_probs=27.1
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
+.-++|.||||+||||+++.+|..++..+++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4568999999999999999999999976654
No 168
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.04 E-value=0.00036 Score=64.37 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=26.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
+.-+.|.||||+||||++++||..+|..+++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 4568899999999999999999999765554
No 169
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.03 E-value=0.00041 Score=62.88 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=27.6
Q ss_pred ceeeCCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011374 251 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~ 280 (487)
+.|.|+||+||||+++.+|..+ |+++++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6799999999999999999998 89988775
No 170
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.02 E-value=0.0012 Score=60.86 Aligned_cols=23 Identities=43% Similarity=0.780 Sum_probs=21.2
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l 272 (487)
-+.|.||+|+|||||++.||..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999987
No 171
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.01 E-value=0.00031 Score=67.25 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=28.9
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
.+.-++|.||||+||||+++.++..+++.+++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 345689999999999999999999999887755
No 172
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.01 E-value=0.00026 Score=65.98 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=26.6
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
++|.||||+||||+++.+|..+++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999999888765
No 173
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.00 E-value=0.0002 Score=72.50 Aligned_cols=50 Identities=18% Similarity=0.400 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 220 FDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 220 ~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
+.+.+.+++.+..++.. | ....++|.||||+|||+++++||+.++++++.
T Consensus 5 ~~L~~~il~~l~~~i~~-------g--~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIED-------N--YRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHHHTTTT-------C--SCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-------C--CeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 45666666666544321 1 12358999999999999999999999888743
No 174
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.99 E-value=0.0004 Score=66.26 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=26.8
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
+.-+.|.||||+||||+++.||..++...++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4568999999999999999999999876553
No 175
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.98 E-value=0.0044 Score=70.73 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=38.3
Q ss_pred ccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHH------cCCcEEEeecCc
Q 011374 217 AMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANY------LNFDVYDLELSS 283 (487)
Q Consensus 217 ~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~------l~~~v~~l~~~~ 283 (487)
+|.++..++|.+.+.. ....+-+.++||+|.|||+||+.+++. +...++.++++.
T Consensus 131 VGRe~eLeeL~elL~~------------~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE------------LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp CCCHHHHHHHHHHHHH------------CCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CCcHHHHHHHHHHHhc------------cCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 6777777777766541 012456889999999999999999863 344455555544
No 176
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.97 E-value=0.00043 Score=65.36 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=27.1
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCcEE
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~ 277 (487)
.++.++|.||||+||+|.++.||..++++.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 3466889999999999999999999987665
No 177
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.94 E-value=0.00037 Score=65.62 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=26.1
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
++|.||||+||||+++.+|..++++++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 68999999999999999999999877654
No 178
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.93 E-value=0.00043 Score=69.23 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=30.4
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~ 281 (487)
++.++|.||+|+|||+++.++|..++..++++|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 3568999999999999999999999988888764
No 179
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.90 E-value=0.0033 Score=58.24 Aligned_cols=109 Identities=11% Similarity=0.150 Sum_probs=67.9
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc--c-C-----------------------------hHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV--E-G-----------------------------NKDLRQI 293 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~--~-~-----------------------------~~~l~~l 293 (487)
..+++|+++|.||||+|-++|-.. |..+..+.+..- . + .......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 347899999999999999998665 777777644321 0 0 0111222
Q ss_pred HHH----c--cCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccCCCCceEEEEecCC
Q 011374 294 LIA----T--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSSCGDERIIIFTTNH 367 (487)
Q Consensus 294 ~~~----~--~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~~~~~~iiI~TTN~ 367 (487)
+.. . ....+|++||+-..+.. .-.....++..+.. .++..-||+|+|.
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~----------------------g~l~~~ev~~~l~~----Rp~~~~vIlTGr~ 162 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAY----------------------DYLPLEEVISALNA----RPGHQTVIITGRG 162 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHT----------------------TSSCHHHHHHHHHT----SCTTCEEEEECSS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccC----------------------CCCCHHHHHHHHHh----CcCCCEEEEECCC
Confidence 221 2 34579999999765431 12334456666654 3456788999997
Q ss_pred CCCCCccccCCCceeeEEEeC
Q 011374 368 KDRLDPALLRPGRMDVHIHMS 388 (487)
Q Consensus 368 ~~~LD~ALlRpGRfd~~I~~~ 388 (487)
+ +++|+- .-|.+-+|.
T Consensus 163 a---p~~l~e--~AD~VTem~ 178 (196)
T 1g5t_A 163 C---HRDILD--LADTVSELR 178 (196)
T ss_dssp C---CHHHHH--HCSEEEECC
T ss_pred C---cHHHHH--hCcceeeec
Confidence 4 566665 667666664
No 180
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.89 E-value=0.00036 Score=64.28 Aligned_cols=30 Identities=30% Similarity=0.330 Sum_probs=26.7
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
-+.|.||+|+||||+++.+|+ +|+++++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 378999999999999999999 898887765
No 181
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.87 E-value=0.00055 Score=63.94 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=27.2
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
.-+.|.||||+||||+++.+|..+++++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 3578999999999999999999999877653
No 182
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.87 E-value=0.00056 Score=64.01 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=25.1
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
++|.||||+||+|.++.||..++++.+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 6789999999999999999999887653
No 183
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.86 E-value=0.0013 Score=59.16 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.3
Q ss_pred cccceeeCCCCCcHHHHHHH
Q 011374 248 KRGYLLYGPPGTGKSSLIAA 267 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~a 267 (487)
+.-+.|.||+|+|||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 44578999999999999993
No 184
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.86 E-value=0.0026 Score=64.46 Aligned_cols=61 Identities=30% Similarity=0.501 Sum_probs=38.7
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcC----CcEEEeec-Ccc---------------cChHHHHHHHHHc--cCCeEEEEe
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLEL-SSV---------------EGNKDLRQILIAT--ENKSILVVE 306 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~----~~v~~l~~-~~~---------------~~~~~l~~l~~~~--~~~sIl~ID 306 (487)
..+++.||+|+||||+.+++++.+. ..++.+.- ..+ .....+...+..+ .+|.||++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 3588999999999999999998873 33333211 000 0111233334332 578999999
Q ss_pred ccc
Q 011374 307 DID 309 (487)
Q Consensus 307 eiD 309 (487)
|+-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 995
No 185
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.86 E-value=0.00056 Score=62.71 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=28.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc-CCcEEEeec
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLEL 281 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l-~~~v~~l~~ 281 (487)
.-+.|.||||+||||+++.+|..+ ++++++++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 457899999999999999999999 688887654
No 186
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.86 E-value=0.0005 Score=66.37 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=29.6
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
+..+.|.||||+||||+++.+|..+++++++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 456899999999999999999999999988753
No 187
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.85 E-value=0.00071 Score=61.57 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=26.1
Q ss_pred ceeeCCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011374 251 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~ 280 (487)
+.|.||||+||||+++.++..+ |++++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6789999999999999999999 99887654
No 188
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.85 E-value=0.0011 Score=60.78 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=25.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCc--EEE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFD--VYD 278 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~--v~~ 278 (487)
.-++|.||||+||||+++.+|..++.. ++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 36 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 357899999999999999999998763 544
No 189
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.84 E-value=0.00053 Score=62.97 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=28.3
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
-+.|.||+|+||||+++.+|..+++++++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5789999999999999999999999998754
No 190
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.84 E-value=0.0003 Score=63.67 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=22.1
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcC
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
-++|.||||+||||+++.+|..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999886
No 191
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.84 E-value=0.00058 Score=62.40 Aligned_cols=28 Identities=25% Similarity=0.693 Sum_probs=25.2
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
+.|.|+||+||||+++.+|..++..++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 6899999999999999999999986653
No 192
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.82 E-value=0.00047 Score=63.63 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=26.3
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
.+.|.||||+||||+++.+|. +|+++++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 467899999999999999998 898887654
No 193
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.79 E-value=0.00058 Score=63.17 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=27.8
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
-+.|.|++||||||+++.+|..+|+++++.|
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4678999999999999999999999988754
No 194
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.75 E-value=0.00083 Score=64.13 Aligned_cols=31 Identities=35% Similarity=0.392 Sum_probs=27.7
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
..+.|.||||+||||+++.||..+++++++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 4588999999999999999999999888754
No 195
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.72 E-value=0.0012 Score=60.75 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=23.2
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.+.-+.|.||+|+||||+++++|..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999988
No 196
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.70 E-value=0.0011 Score=64.03 Aligned_cols=32 Identities=38% Similarity=0.463 Sum_probs=27.3
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH---cCCcEEEee
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY---LNFDVYDLE 280 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~---l~~~v~~l~ 280 (487)
.-++|.|+||+||||+++.+|.. .|++++.++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 35889999999999999999998 688877444
No 197
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.66 E-value=0.0019 Score=60.07 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.7
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
|++.+.-+.|.||+|+|||||++.+|..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45556668999999999999999999855
No 198
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.64 E-value=0.0013 Score=62.31 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=27.0
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~ 281 (487)
-.+++.|+||+|||+++-++|..+ |+.+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 358899999999999999999876 777765554
No 199
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.63 E-value=0.0008 Score=61.51 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=27.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
.-+.|.|++|+||||+++.+|.. |+++++.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 45889999999999999999998 98888655
No 200
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.62 E-value=0.001 Score=61.88 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=28.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
..+.|.|+||+|||++++.+|..+|+++++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 45889999999999999999999999888654
No 201
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.60 E-value=0.004 Score=58.92 Aligned_cols=62 Identities=10% Similarity=0.264 Sum_probs=39.2
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecC-------cc-------------cChHHHHHHHHHc---cCCeEE
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS-------SV-------------EGNKDLRQILIAT---ENKSIL 303 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~-------~~-------------~~~~~l~~l~~~~---~~~sIl 303 (487)
-++++||||+|||+++..+|..+ +..++.+... .+ ....++.+.+... ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 46788999999999998887766 5555555211 11 1112333333332 236799
Q ss_pred EEeccchh
Q 011374 304 VVEDIDCC 311 (487)
Q Consensus 304 ~IDeiD~~ 311 (487)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999854
No 202
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.60 E-value=0.0058 Score=52.98 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.8
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
.+++.|+||+|||||+.++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 203
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.59 E-value=0.00045 Score=63.79 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=24.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~ 277 (487)
.-+.|.|+||+||||+++.+|..++...+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999998865433
No 204
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.53 E-value=0.0011 Score=61.73 Aligned_cols=31 Identities=35% Similarity=0.467 Sum_probs=27.1
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
.-+.|.|++|+||||+++.+|. +|+++++.|
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 4578999999999999999998 898887654
No 205
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.49 E-value=0.0014 Score=60.52 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=24.7
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.++-++|.||||+||||+++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4556789999999999999999999885
No 206
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.48 E-value=0.0014 Score=62.10 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=27.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
..+.|.|++|+||||+++.+|..+|+++++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 3477899999999999999999999888764
No 207
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.47 E-value=0.0018 Score=62.20 Aligned_cols=30 Identities=37% Similarity=0.589 Sum_probs=26.9
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
.-+.|.||+|+||||+++.+|..+|+.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 357899999999999999999999988775
No 208
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.45 E-value=0.0024 Score=76.38 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=51.2
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHH---cCCcEEEeecCccc---------------------ChHHHHHHHHHc--
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANY---LNFDVYDLELSSVE---------------------GNKDLRQILIAT-- 297 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~---l~~~v~~l~~~~~~---------------------~~~~l~~l~~~~-- 297 (487)
|++.++.++|+||||||||+|+.++|.. -+..++.++..... ....+.+++...
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~ 109 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 109 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHh
Confidence 5777888999999999999999998765 36677777665531 123344444333
Q ss_pred -cCCeEEEEeccchhhh
Q 011374 298 -ENKSILVVEDIDCCLE 313 (487)
Q Consensus 298 -~~~sIl~IDeiD~~~~ 313 (487)
..+.+||||++..+..
T Consensus 110 ~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 110 SGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 5688999999998865
No 209
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.45 E-value=0.0045 Score=67.65 Aligned_cols=66 Identities=24% Similarity=0.346 Sum_probs=39.9
Q ss_pred CccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcccChH
Q 011374 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNK 288 (487)
Q Consensus 212 ~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~~~~~ 288 (487)
.|-+=-+++.+++.|...+. . +.-.|++||||||||+++..+..++ +..+..+..+ +.
T Consensus 184 ~~~~~~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T----N~ 244 (646)
T 4b3f_X 184 TFFNTCLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS----NI 244 (646)
T ss_dssp CCSSTTCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS----HH
T ss_pred cccCCCCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc----hH
Confidence 33333568889888876553 1 1236899999999997665544433 5555554443 44
Q ss_pred HHHHHHHH
Q 011374 289 DLRQILIA 296 (487)
Q Consensus 289 ~l~~l~~~ 296 (487)
.+.+++..
T Consensus 245 AvD~i~er 252 (646)
T 4b3f_X 245 AVDNLVER 252 (646)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 210
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.44 E-value=0.0024 Score=66.03 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=37.4
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcccChHHHHHHHHHc-cCCeEEEEecc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIAT-ENKSILVVEDI 308 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~~~~~~l~~l~~~~-~~~sIl~IDei 308 (487)
+.-++|.||||+||||+++.++..+++.+++ ...+..-..+....... .....++||..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~--~D~~~~~~~~~~~~~~~l~~g~~vIiD~~ 317 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN--RDTLGSWQRCVSSCQAALRQGKRVVIDNT 317 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC--GGGSCSHHHHHHHHHHHHHTTCCEEEESC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc--cchHHHHHHHHHHHHHHHhcCCcEEEeCC
Confidence 4558899999999999999999999876654 34444333333333222 23333446644
No 211
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.41 E-value=0.001 Score=65.15 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=25.8
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc-CCcEEEe
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL-NFDVYDL 279 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l-~~~v~~l 279 (487)
.-++|.||||+||||+++.++..+ ++.+++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 458899999999999999999974 6666544
No 212
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.41 E-value=0.001 Score=61.46 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=26.3
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc-CCcEEEee
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLE 280 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l-~~~v~~l~ 280 (487)
.-+.|.||||+||||+++.++..+ ++.++..|
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 347799999999999999999988 66665544
No 213
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.41 E-value=0.0016 Score=62.43 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=25.6
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcE
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDV 276 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v 276 (487)
+.-+.|.||||+||||+++.||..+++++
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 34588999999999999999999999873
No 214
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.39 E-value=0.021 Score=59.73 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.5
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l 272 (487)
.++|+||||+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48899999999999999988765
No 215
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.38 E-value=0.0018 Score=58.72 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=22.8
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
++-+.|.||+|+|||||++.|+..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34578999999999999999999764
No 216
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.37 E-value=0.0046 Score=53.98 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.6
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l 272 (487)
.+++.|++|+|||||+.++.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 217
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.37 E-value=0.0008 Score=62.12 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=22.8
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-|.|.|+||+||||+++.+|..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34588999999999999999999874
No 218
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.36 E-value=0.0047 Score=56.90 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=28.0
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~ 283 (487)
+.-+.|.||+|+||||+++.++..+ +.+++.++...
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3447789999999999999999976 66666654443
No 219
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.35 E-value=0.025 Score=52.33 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=30.5
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcC---CCcccceeeCCCCCcHHHH
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGK---AWKRGYLLYGPPGTGKSSL 264 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~---~~~rg~LL~GPPGtGKTsL 264 (487)
.+|+++...+.+.+.+.+. -+..+..|+.... .-.+.+++.+|+|+|||..
T Consensus 14 ~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGY---GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CChhhcCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 4788888777766655431 0111222222111 1235799999999999976
No 220
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.35 E-value=0.002 Score=58.53 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=22.0
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
-+.|.||||+||||+++.||..++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999987654
No 221
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.34 E-value=0.0029 Score=57.26 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=22.9
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-++|.|+||+||||+++.+|..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999884
No 222
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.32 E-value=0.028 Score=59.54 Aligned_cols=41 Identities=5% Similarity=0.118 Sum_probs=33.0
Q ss_pred ceEEEEecCCCC--CCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 011374 358 ERIIIFTTNHKD--RLDPALLRPGRMDVHIHMSYCTPCGFKMLAS 400 (487)
Q Consensus 358 ~~iiI~TTN~~~--~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~ 400 (487)
++.+|++|.+|. .++..+.. -+...|.|...+..+.+.++.
T Consensus 332 GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 332 GIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred CcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 477888888876 57777766 778889999999999888764
No 223
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.30 E-value=0.0099 Score=54.71 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=21.9
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
...++|.|++|+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999864
No 224
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.29 E-value=0.018 Score=61.63 Aligned_cols=41 Identities=7% Similarity=0.108 Sum_probs=33.4
Q ss_pred CceEEEEecCCCC--CCCccccCCCceeeEEEeCCCCHHHHHHHH
Q 011374 357 DERIIIFTTNHKD--RLDPALLRPGRMDVHIHMSYCTPCGFKMLA 399 (487)
Q Consensus 357 ~~~iiI~TTN~~~--~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~ 399 (487)
-++.+|++|.+|. .|+..+.. -|...|.|...+..+.+.++
T Consensus 377 ~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 377 AGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp TTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHH
T ss_pred CCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhc
Confidence 3588899999887 78887776 67788999999998887776
No 225
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.26 E-value=0.0018 Score=65.05 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=31.2
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV 284 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~ 284 (487)
+-++|.||+|+|||+|+..||..++..+++.|--.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 458899999999999999999999988887775543
No 226
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.25 E-value=0.0055 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.2
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l 272 (487)
.+++.|++|+|||||+.++.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
No 227
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.25 E-value=0.0027 Score=59.70 Aligned_cols=38 Identities=26% Similarity=0.195 Sum_probs=27.8
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~ 281 (487)
|.+.+.-++|+||||+|||+|+..+|... +..++.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45566678999999999999988776543 445555543
No 228
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.24 E-value=0.0025 Score=63.31 Aligned_cols=35 Identities=20% Similarity=0.497 Sum_probs=29.7
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEeecC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~ 282 (487)
++-++|.||+|+|||+|+..+|..++..++..|.-
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 45688999999999999999999998877766543
No 229
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.24 E-value=0.018 Score=52.53 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=18.2
Q ss_pred cccceeeCCCCCcHHHHH-HHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLI-AAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa-~alA~~l 272 (487)
.+.+++.+|+|+|||..+ ..+...+
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHH
Confidence 367999999999999763 3444443
No 230
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.24 E-value=0.0085 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.3
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l 272 (487)
.+++.|++|+|||||+.++++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998653
No 231
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.24 E-value=0.0019 Score=59.16 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.9
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.+.-+.|.||+|+||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34557899999999999999999987
No 232
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.23 E-value=0.0029 Score=58.67 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=27.2
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcC----CcEEEee
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLE 280 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~----~~v~~l~ 280 (487)
.+.-++|.|+||+||||+++.++..++ .+++.++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 345688999999999999999999875 4455554
No 233
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.21 E-value=0.01 Score=62.01 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=29.1
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc----CCcEEEeec
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLEL 281 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l----~~~v~~l~~ 281 (487)
|.+.+.-++|.||||+|||+|+..+|..+ +.++..+++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 55666668999999999999999988754 456665543
No 234
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.18 E-value=0.0019 Score=63.16 Aligned_cols=31 Identities=29% Similarity=0.297 Sum_probs=26.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
.-+.|.|+||+||||+++.++ .+|+++++.+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 357899999999999999999 6888877654
No 235
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.18 E-value=0.011 Score=51.14 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
..+++.|++|+|||||+.++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 236
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.17 E-value=0.0056 Score=63.74 Aligned_cols=62 Identities=23% Similarity=0.361 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011374 220 FDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (487)
Q Consensus 220 ~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~ 282 (487)
..+++.+.+.|...+..+...... ...+.-+++.||||+||||++..+|.++ |..+..+++.
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 345556666666555431100000 1235668999999999999999999877 5556555443
No 237
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.16 E-value=0.0036 Score=58.00 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=22.8
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-+.|.||+|+|||||++.|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34577899999999999999999885
No 238
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.16 E-value=0.0021 Score=59.82 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=26.9
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
+++++|.||+|+|||+|+.++|...+ .++..|
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 56899999999999999999999876 555443
No 239
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.15 E-value=0.0024 Score=59.30 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=27.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
.-|.|.||+|||||++++.+|..+|+++++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 357899999999999999999999999985
No 240
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.14 E-value=0.03 Score=48.54 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=19.1
Q ss_pred ceeeCCCCCcHHHHHHHHHHH
Q 011374 251 YLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~ 271 (487)
+++.|++|+|||+|+.++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999764
No 241
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.13 E-value=0.0025 Score=64.12 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=28.2
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~ 281 (487)
+-++|.||+|+|||+|+..||..++..++..|-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 457899999999999999999999877666543
No 242
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.10 E-value=0.0025 Score=59.13 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.4
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
++-+.|.||+|+||||+++.|+..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 445789999999999999999998753
No 243
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.09 E-value=0.0088 Score=53.76 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=20.9
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.-+++.|++|+|||+|+.++.+.-
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998743
No 244
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.08 E-value=0.014 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
..+++.|++|+|||+|+.++++.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45899999999999999999864
No 245
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.08 E-value=0.0092 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.4
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l 272 (487)
-+++.|++|+|||||+.++.+.-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998643
No 246
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.07 E-value=0.011 Score=51.42 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
.+++.|++|+|||||+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 247
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.07 E-value=0.012 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.1
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
..+++.|++|+|||||+.++.+.-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999998654
No 248
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.06 E-value=0.011 Score=52.39 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-+++.|++|+|||+|+.++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 249
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.04 E-value=0.003 Score=65.88 Aligned_cols=95 Identities=17% Similarity=0.276 Sum_probs=63.1
Q ss_pred HHHHHHccCCeEEEEeccchhhhhhhHHHhhhcccchhhhhcccCCchhhHhhHHHHhhccccC------CCCceEEEEe
Q 011374 291 RQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRVTLSGLLNFIDGLWSS------CGDERIIIFT 364 (487)
Q Consensus 291 ~~l~~~~~~~sIl~IDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~lDgl~s~------~~~~~iiI~T 364 (487)
+..+..+....|+++||||.+....... . ++.........||..|||-... ...++++|+|
T Consensus 242 ~~ai~~ae~~~il~~DEidki~~~~~~~---~----------~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~ 308 (444)
T 1g41_A 242 QKAIDAVEQNGIVFIDEIDKICKKGEYS---G----------ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 308 (444)
T ss_dssp HHHHHHHHHHCEEEEETGGGGSCCSSCS---S----------SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred HHHHHHhccCCeeeHHHHHHHhhccCCC---C----------CCchHHHHHHHHHHHhcccccccccceecCCcEEEEec
Confidence 3444455577899999999986321100 0 0011123567899999984211 1245788888
Q ss_pred c----CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 011374 365 T----NHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLAS 400 (487)
Q Consensus 365 T----N~~~~LD~ALlRpGRfd~~I~~~~p~~~~~~~l~~ 400 (487)
. +.+..+-|.|+. ||+.+|.|+.++.+++..|+.
T Consensus 309 gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 309 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp ECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred cccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 6 234445588887 999999999999999999984
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.04 E-value=0.0033 Score=57.52 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=22.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-+.|.||+|+|||||++.|+..+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34578999999999999999999864
No 251
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.04 E-value=0.0083 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.3
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
-.+++.|++|+|||||+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 252
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.04 E-value=0.0085 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
--++|.|++|+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 253
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.03 E-value=0.012 Score=57.85 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=27.2
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc----CCcEEEeecC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELS 282 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l----~~~v~~l~~~ 282 (487)
++.++|.||+|+||||++..+|..+ |..+..++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4568899999999999999999876 4455555443
No 254
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.02 E-value=0.017 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-++|.|++|+|||||+.++.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 255
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.015 Score=52.56 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.2
Q ss_pred cccceeeCCCCCcHHHHHHHHHHH
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-.+++.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999999865
No 256
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.95 E-value=0.0051 Score=53.67 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.7
Q ss_pred cceeeCCCCCcHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~ 270 (487)
-+++.|+||+|||+|+.++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 378999999999999999864
No 257
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.94 E-value=0.011 Score=56.19 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=26.5
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~ 281 (487)
.++++||+|+|||.++.+++..++..++.+-.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 48999999999999999999888766665543
No 258
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.89 E-value=0.0039 Score=56.68 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.2
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+-+.|.||+|+|||||++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998874
No 259
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.87 E-value=0.0037 Score=62.19 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=27.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~ 281 (487)
+-+++.||+|+|||+|+..+|..++..++..|.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 347889999999999999999999876665543
No 260
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.86 E-value=0.0031 Score=58.22 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=25.1
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcC--CcEEE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLN--FDVYD 278 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~--~~v~~ 278 (487)
.-+.|.||+|+|||||++.|+..++ ..++.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 4477999999999999999999987 44443
No 261
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.85 E-value=0.021 Score=51.01 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.9
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
--++|.|+||+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 358999999999999999888754
No 262
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.84 E-value=0.023 Score=52.42 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=33.2
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCC---CcccceeeCCCCCcHHHHHHHHH
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA---WKRGYLLYGPPGTGKSSLIAAMA 269 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~---~~rg~LL~GPPGtGKTsLa~alA 269 (487)
+..+|+++...+.+.+.+.+. -+..+..|+....+ -.+.+++.+|+|+|||..+-..+
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~ 72 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDC---GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 72 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHT---TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHH
Confidence 445788888777777666431 01112222222111 13569999999999997655433
No 263
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.80 E-value=0.0043 Score=57.14 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=22.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
++-+.|.||+|+|||||++.|+..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45688999999999999999998764
No 264
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.80 E-value=0.014 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
..++|.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999863
No 265
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.78 E-value=0.017 Score=52.72 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.1
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+.+++.+|+|+|||.++...+..+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999888776543
No 266
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.78 E-value=0.021 Score=60.74 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=24.8
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
|++.+..++|.||||+|||+|++.+|...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45556668999999999999999999765
No 267
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.75 E-value=0.0091 Score=52.43 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=19.6
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
-+++.|+||+|||+|+.++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999753
No 268
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.74 E-value=0.006 Score=56.06 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
|-++|.||+|+|||||++.+.....-
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 45899999999999999999887643
No 269
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.74 E-value=0.02 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.9
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
-+++.|++|+|||+|+.++.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 270
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.73 E-value=0.011 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.5
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l 272 (487)
.+++.|++|+|||||+.++++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998653
No 271
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.73 E-value=0.0041 Score=59.12 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=25.6
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEe
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l 279 (487)
+-|.||||+||||+++.||..++++.+..
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 45789999999999999999999887743
No 272
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.73 E-value=0.0052 Score=60.93 Aligned_cols=33 Identities=36% Similarity=0.539 Sum_probs=27.5
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHcCCcE
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV 276 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l~~~v 276 (487)
.++.+..+.|.||+|+|||||++.|++.+.-.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 456667789999999999999999999884334
No 273
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.71 E-value=0.011 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.7
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l 272 (487)
-++|.|++|+|||+|+.++.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 274
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.71 E-value=0.041 Score=50.03 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=15.5
Q ss_pred cccceeeCCCCCcHHHHHH
Q 011374 248 KRGYLLYGPPGTGKSSLIA 266 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~ 266 (487)
.+.+++.+|+|+|||..+.
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3679999999999996443
No 275
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.70 E-value=0.0057 Score=60.50 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHhc--CCCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 220 FDMKKMIMDDLERFLKRKEFYKRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 220 ~~~K~~i~~~l~~fl~~~~~y~~~g--~~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+.+++.+.+.+...+........+. ...+.-+.|.||.|+||||+++.||..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3455666666665554321001122 2334457899999999999999999987
No 276
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.69 E-value=0.014 Score=52.23 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-++|.|++|+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999875
No 277
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.69 E-value=0.011 Score=54.67 Aligned_cols=63 Identities=13% Similarity=0.236 Sum_probs=39.5
Q ss_pred ccceeeCCCCCcHH-HHHHHHHHHc--CCcEEEeecC---ccc--ChHH------------HHHHHHHccCCeEEEEecc
Q 011374 249 RGYLLYGPPGTGKS-SLIAAMANYL--NFDVYDLELS---SVE--GNKD------------LRQILIATENKSILVVEDI 308 (487)
Q Consensus 249 rg~LL~GPPGtGKT-sLa~alA~~l--~~~v~~l~~~---~~~--~~~~------------l~~l~~~~~~~sIl~IDei 308 (487)
+-+++|||+|+||| .|++++.++. +..++.+... ... -.+. +.+++.....-.+|+|||+
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlIDEa 100 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEG 100 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEESSG
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEEch
Confidence 45788999999999 9999998876 5566655422 000 0011 1122222334569999999
Q ss_pred chh
Q 011374 309 DCC 311 (487)
Q Consensus 309 D~~ 311 (487)
.-+
T Consensus 101 QFf 103 (195)
T 1w4r_A 101 QFF 103 (195)
T ss_dssp GGC
T ss_pred hhh
Confidence 865
No 278
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.68 E-value=0.014 Score=51.91 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-++|.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35799999999999999999865
No 279
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.68 E-value=0.021 Score=64.76 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=40.0
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc-----CCcE----EE----------eecCcc---------cChHHHHHHHHHcc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL-----NFDV----YD----------LELSSV---------EGNKDLRQILIATE 298 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l-----~~~v----~~----------l~~~~~---------~~~~~l~~l~~~~~ 298 (487)
.+..+.|.||.|+||||+.+.+|... +..+ .. +...+. .....+..++..+.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~ 751 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKAT 751 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhcc
Confidence 34568899999999999999987432 2111 11 111110 01123334455567
Q ss_pred CCeEEEEeccchhh
Q 011374 299 NKSILVVEDIDCCL 312 (487)
Q Consensus 299 ~~sIl~IDeiD~~~ 312 (487)
.|++|++||.-.-+
T Consensus 752 ~p~LlLLDEP~~Gl 765 (918)
T 3thx_B 752 SQSLVILDELGRGT 765 (918)
T ss_dssp TTCEEEEESTTTTS
T ss_pred CCCEEEEeCCCCCC
Confidence 89999999997544
No 280
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.64 E-value=0.007 Score=54.01 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.6
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+.+.-+.|.||.|+|||||+++|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 444458899999999999999999988
No 281
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.64 E-value=0.047 Score=53.85 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=31.5
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCC----CcccceeeCCCCCcHHHHHHHHHH
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA----WKRGYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~----~~rg~LL~GPPGtGKTsLa~alA~ 270 (487)
.+|+++...+.+.+.+.+. -+..+..++....+ -++.+++.+|+|+|||..+...+-
T Consensus 6 ~~f~~~~l~~~~~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK---GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 3577776666665555331 11111122221111 135789999999999987654443
No 282
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.63 E-value=0.011 Score=61.37 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=42.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCcc------------------------c--Ch-HHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV------------------------E--GN-KDLRQILIAT 297 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~~------------------------~--~~-~~l~~l~~~~ 297 (487)
++.+++.||||+||||++..+|..+ |..+..+++... . +. .-+.+.+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999987 355555544311 0 10 1223455555
Q ss_pred cCCeEEEEeccchh
Q 011374 298 ENKSILVVEDIDCC 311 (487)
Q Consensus 298 ~~~sIl~IDeiD~~ 311 (487)
....+++||..-.+
T Consensus 179 ~~~D~vIIDT~G~~ 192 (432)
T 2v3c_C 179 KKADVLIIDTAGRH 192 (432)
T ss_dssp SSCSEEEEECCCSC
T ss_pred hCCCEEEEcCCCCc
Confidence 55678999987654
No 283
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.63 E-value=0.031 Score=62.34 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=32.4
Q ss_pred CCccccccCHHHHHHHHHHHHHHHh--cHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHH
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLK--RKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~--~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.+|+.+...+...+.+...-..+.. ....... ......+++.||+|+|||+++..++..
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3688877776655544322111111 1111111 111345899999999999977766543
No 284
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.63 E-value=0.0074 Score=62.71 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=27.1
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~ 281 (487)
++-+++.||+|+||||++..+|..+ +..+..+++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 5568899999999999999999877 555554443
No 285
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.63 E-value=0.0049 Score=60.24 Aligned_cols=37 Identities=19% Similarity=0.078 Sum_probs=28.7
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc----CCcEEEee
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLE 280 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l----~~~v~~l~ 280 (487)
|++.+.-++|.||||+|||+|+..+|..+ |..+..++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 56666678999999999999999999876 33554443
No 286
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.61 E-value=0.014 Score=50.89 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.4
Q ss_pred cceeeCCCCCcHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~ 270 (487)
-+++.|++|+|||||+.++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999986
No 287
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.61 E-value=0.0061 Score=57.05 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=23.0
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.+.-+.|.||+|+|||||++.|++.+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34558899999999999999999987
No 288
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.61 E-value=0.057 Score=55.22 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.0
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+.-++|.||||||||+|++.||+.+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 3458999999999999999999875
No 289
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.60 E-value=0.0078 Score=65.38 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=29.6
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~ 280 (487)
+.-|+|.|+||+||||+++++|..+ +.+++.++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 3458899999999999999999999 99998886
No 290
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.58 E-value=0.0062 Score=56.30 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=23.4
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
.+.-+.|.||+|+|||||+++|++.+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 344578999999999999999999885
No 291
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.58 E-value=0.021 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.7
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
--+++.|++|+|||||+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999876
No 292
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.57 E-value=0.046 Score=51.34 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=31.3
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcC---CCcccceeeCCCCCcHHHHH
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGK---AWKRGYLLYGPPGTGKSSLI 265 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~---~~~rg~LL~GPPGtGKTsLa 265 (487)
..+|+++...+.+.+.+.+. -+..+..++...+ .-++.+++.+|+|+|||..+
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAY---GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATF 84 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 35799988777776655321 1111222222211 12357999999999999764
No 293
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.57 E-value=0.037 Score=62.85 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=39.2
Q ss_pred cccceeeCCCCCcHHHHHHHHHHH-----cCCcE----EE----------eecCcc--c-------ChHHHHHHHHHccC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANY-----LNFDV----YD----------LELSSV--E-------GNKDLRQILIATEN 299 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~-----l~~~v----~~----------l~~~~~--~-------~~~~l~~l~~~~~~ 299 (487)
++-++|.||.|+||||+.+.+|.. .|..+ .. +...+. . .-..+..++..+..
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~ 741 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATK 741 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccC
Confidence 456889999999999999998532 23211 01 111110 0 01233445555678
Q ss_pred CeEEEEeccchhh
Q 011374 300 KSILVVEDIDCCL 312 (487)
Q Consensus 300 ~sIl~IDeiD~~~ 312 (487)
|++|++||+-.-+
T Consensus 742 ~sLlLLDEp~~Gl 754 (934)
T 3thx_A 742 DSLIIIDELGRGT 754 (934)
T ss_dssp TCEEEEESCSCSS
T ss_pred CcEEEEeCCCCCC
Confidence 9999999997543
No 294
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.56 E-value=0.023 Score=51.84 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.1
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-++|.|++|+|||+|+.++.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 35899999999999999999753
No 295
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.54 E-value=0.018 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.3
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-++|.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999764
No 296
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.53 E-value=0.044 Score=51.19 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=30.4
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcC---CCcccceeeCCCCCcHHHHH
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGK---AWKRGYLLYGPPGTGKSSLI 265 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~---~~~rg~LL~GPPGtGKTsLa 265 (487)
..+|+++...+.+.+.+.+. -+..+..++.... ...+.+++.+|+|+|||..+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA---QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT---TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 34688887777666655321 0111122222111 12467999999999999853
No 297
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.52 E-value=0.0075 Score=55.93 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.7
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
++-+.|.||+|+|||||+++|+..+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44578899999999999999998865
No 298
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.50 E-value=0.006 Score=62.68 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=27.9
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCcEEEee
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~v~~l~ 280 (487)
++-++|.||+|+|||+|+..+|..++..++..|
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 345789999999999999999999987776554
No 299
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.50 E-value=0.0073 Score=57.13 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=24.9
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcC--CcEEE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLN--FDVYD 278 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~--~~v~~ 278 (487)
.-+.|.||||+||||+++.+++.++ .+++.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 3467889999999999999999996 45543
No 300
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.50 E-value=0.031 Score=62.47 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.2
Q ss_pred cccceeeCCCCCcHHHHHHHHHHH
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
++.+.|.||.|+||||+.+.+|..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 456889999999999999999875
No 301
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.46 E-value=0.006 Score=57.68 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=27.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEEE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~~ 278 (487)
..|.+.|++|||||++++.+|..+|+++++
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 357889999999999999999999999985
No 302
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.45 E-value=0.01 Score=52.16 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.8
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
-+++.|++|+|||+|+.++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999854
No 303
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.44 E-value=0.0094 Score=58.59 Aligned_cols=28 Identities=29% Similarity=0.233 Sum_probs=23.6
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
.+.-+.|.||+|+|||||++.|+..++.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3445778999999999999999998853
No 304
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.41 E-value=0.023 Score=51.48 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-+++.|++|+|||+|+.++.+.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999754
No 305
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.38 E-value=0.047 Score=51.27 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=17.4
Q ss_pred cccceeeCCCCCcHHHHHHHHH
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMA 269 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA 269 (487)
++.+++.||.|||||+++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4568999999999998666443
No 306
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.38 E-value=0.013 Score=52.70 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.4
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l 272 (487)
-+++.|++|+|||+|+.++.+.-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999997654
No 307
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.014 Score=52.66 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.8
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
--+++.|++|+|||+|+.++.+.-
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998643
No 308
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.37 E-value=0.017 Score=50.38 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=18.3
Q ss_pred ceeeCCCCCcHHHHHHHHHH
Q 011374 251 YLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~ 270 (487)
+++.|+||+|||+|+.++.+
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999963
No 309
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.35 E-value=0.013 Score=52.15 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=20.7
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
--+++.|++|+|||+|+.++.+.-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998643
No 310
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.33 E-value=0.0096 Score=57.56 Aligned_cols=27 Identities=41% Similarity=0.626 Sum_probs=23.3
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
..+.-++|.||+|+||||++++++..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 344558899999999999999999876
No 311
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.33 E-value=0.012 Score=64.13 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=19.9
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
..+++.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999888777654
No 312
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.32 E-value=0.0032 Score=57.97 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=21.4
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcC
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.|.||+|+||||+++.|+..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999985
No 313
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.32 E-value=0.0082 Score=60.89 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHhc--CCCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 221 DMKKMIMDDLERFLKRKEFYKRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 221 ~~K~~i~~~l~~fl~~~~~y~~~g--~~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.+++.+.+.|...+........+. ...+.-+.|.||.|+||||+++.||..+
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 455555555555554321001122 2334558899999999999999999987
No 314
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.30 E-value=0.052 Score=48.42 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-+++.|+||+|||+|+.++++.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 315
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.27 E-value=0.024 Score=56.17 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=29.9
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~ 282 (487)
|.+++.-++|.|+||+|||+|+..+|... +.++..+++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 56666679999999999999999998654 3456555544
No 316
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.26 E-value=0.0077 Score=59.71 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011374 222 MKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (487)
Q Consensus 222 ~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~ 281 (487)
+++.+.+.+...+.....+ .+....+.-+++.||+|+||||++..+|..+ +..+..++.
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 4455555555555432100 0112334568899999999999999999877 445554443
No 317
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.26 E-value=0.02 Score=50.43 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.7
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
-.+++.|++|+|||+|+.++.+.-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999998643
No 318
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.25 E-value=0.022 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
..+++.|++|+|||||+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 319
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.25 E-value=0.0093 Score=56.11 Aligned_cols=28 Identities=39% Similarity=0.508 Sum_probs=23.7
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.+.-+.|.||+|+|||||+++|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3445678999999999999999999875
No 320
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.24 E-value=0.0084 Score=63.21 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.1
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+.-++|.||+|+|||||++.||+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 3447899999999999999999987
No 321
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.24 E-value=0.022 Score=53.29 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=18.5
Q ss_pred ceeeCCCCCcHHHHHHHHHH
Q 011374 251 YLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~ 270 (487)
++|.|.+|+|||+|+..+.+
T Consensus 16 ivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHh
Confidence 79999999999999998875
No 322
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.22 E-value=0.02 Score=59.27 Aligned_cols=50 Identities=28% Similarity=0.316 Sum_probs=33.7
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCCCcccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.+++++....+.+..+ ..+ + .....-+++.||+|+||||+.++|++.++
T Consensus 143 ~~~l~~Lg~~~~~~~~L-~~l---~----------~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNF-RRL---I----------KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHH-HHH---H----------TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHH-HHH---H----------HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 34677777666544322 222 1 11223478999999999999999999885
No 323
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.21 E-value=0.024 Score=50.76 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.2
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-++|.|++|+|||||+.++.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999753
No 324
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.20 E-value=0.023 Score=51.31 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.1
Q ss_pred cceeeCCCCCcHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~ 270 (487)
.+++.|++|+|||+|+.++.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999864
No 325
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.19 E-value=0.02 Score=49.98 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.2
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
..+++.|++|+|||+|+.++.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999763
No 326
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.16 E-value=0.019 Score=57.46 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.5
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
..+.-+.|.||+|+||||+++.||..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345568899999999999999999987
No 327
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.15 E-value=0.015 Score=53.10 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=28.4
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCCcEEEeecCcc
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV 284 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~~~~ 284 (487)
+|++|++|+|||++|..+|.. +.+++.+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999999999988 888877776553
No 328
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.15 E-value=0.057 Score=48.16 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=20.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHH
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~ 270 (487)
..-+++.|++|+|||+|+.++.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999984
No 329
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.13 E-value=0.015 Score=51.22 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.3
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
..+++.|+||+|||||+.++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 330
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.11 E-value=0.053 Score=50.58 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcC---CCcccceeeCCCCCcHHHHH
Q 011374 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGK---AWKRGYLLYGPPGTGKSSLI 265 (487)
Q Consensus 209 ~p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~---~~~rg~LL~GPPGtGKTsLa 265 (487)
.+.+|+++...+.+.+.+.+. -+..+..++.... ..++.+++.+|+|+|||...
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAA---GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 345788887777766655331 0111222222111 12467999999999999763
No 331
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.10 E-value=0.016 Score=50.41 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.8
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
.+++.|++|+|||||+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 332
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.10 E-value=0.049 Score=51.16 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.0
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.-++|.|++|+|||||+.++.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 458999999999999999998643
No 333
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.09 E-value=0.0072 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
--+++.|++|+|||||+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999865
No 334
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.08 E-value=0.03 Score=50.66 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~ 270 (487)
--+++.|+||+|||+|+.++.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999864
No 335
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.07 E-value=0.016 Score=57.84 Aligned_cols=36 Identities=33% Similarity=0.495 Sum_probs=28.3
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~ 282 (487)
.++.+++.||+|+||||++..||..+ +..+..+++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 44568899999999999999999877 5566655544
No 336
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.07 E-value=0.038 Score=50.67 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.2
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
--++|.|++|+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999853
No 337
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.07 E-value=0.013 Score=59.73 Aligned_cols=29 Identities=41% Similarity=0.634 Sum_probs=24.4
Q ss_pred CCCcccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 245 ~~~~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
...+..++|.||+|+||||++++|++.+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34455689999999999999999998773
No 338
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.05 E-value=0.021 Score=50.29 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=19.9
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
--+++.|+||+|||+|+.++.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 34899999999999999999753
No 339
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.04 E-value=0.018 Score=51.77 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=19.8
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
-+++.|++|+|||+|+.++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 340
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.00 E-value=0.0047 Score=60.71 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=25.1
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcC---CcEEEeecCccc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSSVE 285 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~---~~v~~l~~~~~~ 285 (487)
-+.|.||+|+||||+++.++..++ ..+..+++..+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 477899999999999999999876 445555555554
No 341
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.99 E-value=0.012 Score=55.93 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.1
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFD 275 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~ 275 (487)
-+-|.||.|+|||||++.|+..+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 46789999999999999999988754
No 342
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.98 E-value=0.018 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-++|.|++|+|||+|+.++.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 343
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.94 E-value=0.13 Score=51.09 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=31.1
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHH-----hcCCCcccceeeCCCCCcHHHHHH
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKR-----VGKAWKRGYLLYGPPGTGKSSLIA 266 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~-----~g~~~~rg~LL~GPPGtGKTsLa~ 266 (487)
.+|+++...+.+.+.+.+. -+..+..++. +-...++.+++.+|+|+|||..+-
T Consensus 5 ~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~ 62 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAM---KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS 62 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHH
Confidence 4677777777666665431 0111111221 111234789999999999997654
No 344
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.94 E-value=0.054 Score=63.94 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=24.7
Q ss_pred CCCcccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 245 ~~~~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
++++.-+.|.||.|+|||||++.|.+++.
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 34555688999999999999999998874
No 345
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.94 E-value=0.016 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.5
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l 272 (487)
-++|.|++|+|||+|+.++.+.-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 346
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.93 E-value=0.011 Score=52.51 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=9.7
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998753
No 347
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.89 E-value=0.028 Score=50.46 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
-.+++.|++|+|||||+.++.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 35899999999999999999873
No 348
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.022 Score=51.06 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=22.2
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
...-+++.|++|+|||||+.++++.-
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999998753
No 349
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.87 E-value=0.13 Score=48.66 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=29.5
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcC---CCcccceeeCCCCCcHHHHH
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGK---AWKRGYLLYGPPGTGKSSLI 265 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~---~~~rg~LL~GPPGtGKTsLa 265 (487)
.+|+++...+.+.+.+.+. -+..+..++...+ ..++.+++.+|+|+|||..+
T Consensus 43 ~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQL---GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAF 97 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHh
Confidence 4688887776666554321 0111112222111 12367999999999999754
No 350
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.87 E-value=0.014 Score=53.03 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.1
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.-++|.|++|+|||+|+.++.+.-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 458999999999999999998753
No 351
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.86 E-value=0.013 Score=62.38 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=23.1
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-|+|.|+||+||||+++.+|.+++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999884
No 352
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.84 E-value=0.015 Score=52.88 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-++|.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 353
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.81 E-value=0.0073 Score=56.71 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=15.7
Q ss_pred cccceeeCCCCCcHHHHHHHHH-HHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMA-NYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA-~~l~ 273 (487)
+.-+.|.||+|+||||+++.|+ ..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3457899999999999999999 8763
No 354
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.80 E-value=0.02 Score=64.14 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=19.9
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+-+++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 347899999999999888777665
No 355
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=94.79 E-value=0.033 Score=43.23 Aligned_cols=46 Identities=7% Similarity=-0.134 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 388 SYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 388 ~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
|.|+.++|++|++.++......-..++..++..+ +||+|||..+|.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~ 47 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 47 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 6899999999999999865433334677777765 499999999884
No 356
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.78 E-value=0.14 Score=56.15 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=17.3
Q ss_pred CcccceeeCCCCCcHHHHHH
Q 011374 247 WKRGYLLYGPPGTGKSSLIA 266 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~ 266 (487)
-.+.+++.||+|+|||+.+.
T Consensus 45 ~~~~~lv~apTGsGKT~~~~ 64 (715)
T 2va8_A 45 EGNRLLLTSPTGSGKTLIAE 64 (715)
T ss_dssp TTCCEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEcCCCCcHHHHHH
Confidence 35779999999999999874
No 357
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.78 E-value=0.073 Score=49.37 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.2
Q ss_pred cccceeeCCCCCcHHHHH
Q 011374 248 KRGYLLYGPPGTGKSSLI 265 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa 265 (487)
++.+++.+|.|+|||...
T Consensus 57 ~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 467899999999999753
No 358
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.74 E-value=0.011 Score=53.59 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=24.5
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCCcEE
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~~v~ 277 (487)
..+|+||.||+|+|||+++.++... |..++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 3579999999999999999999874 54443
No 359
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.73 E-value=0.026 Score=56.32 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.7
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcC
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
-+.|.||+|+||||+++.|+..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999886
No 360
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.72 E-value=0.066 Score=49.38 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.9
Q ss_pred ccceeeCCCCCcHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLI 265 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa 265 (487)
+.+++.+|+|+|||..+
T Consensus 42 ~~~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAY 58 (219)
T ss_dssp CCEEEECCSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 67899999999999863
No 361
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.71 E-value=0.37 Score=45.87 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.3
Q ss_pred ccceeeCCCCCcHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIA 266 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~ 266 (487)
+.+++.+|.|+|||..+.
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 679999999999997543
No 362
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.69 E-value=0.15 Score=49.65 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=20.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDV 276 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v 276 (487)
+.+++.+|+|+|||..+...+-..+..+
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~ 59 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKS 59 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCE
Confidence 5799999999999987665554444333
No 363
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.69 E-value=0.032 Score=50.74 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-+++.|+||+|||+|+.++.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999854
No 364
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.67 E-value=0.017 Score=52.37 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.0
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
..-+.|.||+|+|||||+..++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4567899999999999999999875
No 365
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.67 E-value=0.017 Score=57.11 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=22.4
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+.-+.|.||+|+||||+++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4457899999999999999999987
No 366
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.64 E-value=0.036 Score=50.35 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.9
Q ss_pred cceeeCCCCCcHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~ 270 (487)
-++|.|+||+|||+|+.++++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999863
No 367
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.62 E-value=0.035 Score=50.05 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.7
Q ss_pred cceeeCCCCCcHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~ 270 (487)
-+++.|+||+|||+|+.++++
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999997
No 368
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.61 E-value=0.034 Score=50.85 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.0
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.-+++.|++|+|||+|+.++.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998643
No 369
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.60 E-value=0.056 Score=60.13 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+..+.|.||.|+||||+.+.+|...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4568899999999999999998753
No 370
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.59 E-value=0.017 Score=54.02 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=27.8
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~~~v~~l~~ 281 (487)
.+-|.|.+||||||+++.++. +|+++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 467899999999999999998 9999998775
No 371
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.55 E-value=0.12 Score=48.45 Aligned_cols=52 Identities=12% Similarity=0.069 Sum_probs=28.8
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcC---CCcccceeeCCCCCcHHHHH
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGK---AWKRGYLLYGPPGTGKSSLI 265 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~---~~~rg~LL~GPPGtGKTsLa 265 (487)
.+|+++...+.+.+.+.+. -+..+..++...+ ..++.+++.+|+|+|||...
T Consensus 29 ~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 29 LNFYEANFPANVMDVIARQ---NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp SSTTTTTCCHHHHHHHHTT---TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHH
Confidence 4677777766665554321 0111111221111 12367999999999999764
No 372
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.53 E-value=0.015 Score=57.35 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.3
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
.-+-|.||+|+|||||++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467899999999999999999876
No 373
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.53 E-value=0.019 Score=61.86 Aligned_cols=33 Identities=27% Similarity=0.155 Sum_probs=28.1
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcC----CcEEEeec
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLEL 281 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~----~~v~~l~~ 281 (487)
.-++|.|+||+||||++++++..++ .+++.++.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 3478899999999999999999986 67777763
No 374
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.49 E-value=0.025 Score=58.73 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=29.2
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc----CCcEEEeec
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLEL 281 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l----~~~v~~l~~ 281 (487)
|.+++.-++|.|+||+|||+|+..+|... +.++..+++
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 55666668999999999999999888654 456666554
No 375
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.46 E-value=0.057 Score=49.61 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=38.8
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecC--c------c----c------ChHHHHHHHHHccC-CeEEEEe
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS--S------V----E------GNKDLRQILIATEN-KSILVVE 306 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~--~------~----~------~~~~l~~l~~~~~~-~sIl~ID 306 (487)
+-++++||+|+|||+.+-.+|..+ +..++.+... . + . .-....+++..... ..+|+||
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dvViID 88 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVIAID 88 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCEEEEE
Confidence 357889999999999988888776 5555544211 0 0 0 00111244444433 5799999
Q ss_pred ccchh
Q 011374 307 DIDCC 311 (487)
Q Consensus 307 eiD~~ 311 (487)
|+.-+
T Consensus 89 Eaqfl 93 (191)
T 1xx6_A 89 EVQFF 93 (191)
T ss_dssp SGGGS
T ss_pred CCCCC
Confidence 98764
No 376
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.42 E-value=0.02 Score=56.80 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=22.4
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-+.|.||+|+|||||++.|+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 33467899999999999999999875
No 377
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.40 E-value=0.018 Score=51.67 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.6
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcC
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
-.+|+||.|+|||+|+.||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 357999999999999999999875
No 378
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.36 E-value=0.02 Score=54.11 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+-+.|.|++|+||||+++.+|..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3478999999999999999999994
No 379
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.34 E-value=0.024 Score=60.01 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=27.3
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~ 281 (487)
++.+++.|+||+||||++..+|..+ |..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4568899999999999999999877 566665554
No 380
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.34 E-value=0.026 Score=61.21 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=20.9
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.+-+++.||||||||+++.++...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3568999999999999998877655
No 381
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.33 E-value=0.058 Score=48.74 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
--++|.|++|+|||+|++.+.+.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999887743
No 382
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.33 E-value=0.0089 Score=57.39 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=24.0
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc-CCcEE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL-NFDVY 277 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l-~~~v~ 277 (487)
.-|.|.|++|+||||+++.||..+ +..++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 347889999999999999999998 44433
No 383
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.33 E-value=0.02 Score=53.57 Aligned_cols=30 Identities=33% Similarity=0.322 Sum_probs=24.6
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcC---CcEEEe
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLN---FDVYDL 279 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~---~~v~~l 279 (487)
-+.|.||+|+||||+++.++..++ ++++..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 467889999999999999999884 555544
No 384
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.30 E-value=0.041 Score=48.91 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=19.8
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
-+++.|++|+|||+|+.++.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999853
No 385
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=94.29 E-value=0.26 Score=49.10 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=31.0
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCC---CcccceeeCCCCCcHHHHH
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA---WKRGYLLYGPPGTGKSSLI 265 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~---~~rg~LL~GPPGtGKTsLa 265 (487)
..+|+++...+.+.+.+... . +..+..++....+ ..+.+++.+|+|+|||..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~-g--~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGY-G--FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHH-T--CCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHc-C--CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 35788888777776665431 0 1111122221111 1356999999999999763
No 386
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.26 E-value=0.026 Score=53.46 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=21.7
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc-------CCcEEEe
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL-------NFDVYDL 279 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l-------~~~v~~l 279 (487)
-|.|.||+|+||||+++.+++.+ +++++..
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 36778999999999999999988 5666543
No 387
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.26 E-value=0.17 Score=55.58 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=16.2
Q ss_pred cccceeeCCCCCcHHHHH
Q 011374 248 KRGYLLYGPPGTGKSSLI 265 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa 265 (487)
.+.+++.||.|+|||..+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 567999999999999877
No 388
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.027 Score=63.09 Aligned_cols=33 Identities=33% Similarity=0.380 Sum_probs=23.4
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc----CCcEEEeecC
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELS 282 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l----~~~v~~l~~~ 282 (487)
-+|+.||||||||+++..++..+ +..+..+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 47899999999999887766544 4455544433
No 389
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.24 E-value=0.014 Score=61.91 Aligned_cols=62 Identities=19% Similarity=0.404 Sum_probs=40.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCC--cEEEeecCc-cc-----------------ChHHHHHHHHHc--cCCeEEEE
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELSS-VE-----------------GNKDLRQILIAT--ENKSILVV 305 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~--~v~~l~~~~-~~-----------------~~~~l~~l~~~~--~~~sIl~I 305 (487)
+.++++.||+|+||||+++++++.+.. .++.++-.. +. ..-.+..++..+ .+|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 457999999999999999999998843 344443211 10 011334444333 46889999
Q ss_pred eccc
Q 011374 306 EDID 309 (487)
Q Consensus 306 DeiD 309 (487)
.|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9985
No 390
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.23 E-value=0.022 Score=49.12 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.9
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
-+++.|++|+|||||+.++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 391
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.22 E-value=0.077 Score=60.91 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.6
Q ss_pred cccceeeCCCCCcHHHHHHHHH
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMA 269 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA 269 (487)
++.++|.||.|+||||+.+.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4668899999999999999984
No 392
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.22 E-value=0.021 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.6
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l 272 (487)
-+.|.||+|+|||||++++++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999863
No 393
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.15 E-value=0.22 Score=48.72 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=31.1
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHH-----HhcCCCcccceeeCCCCCcHHHHH
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYK-----RVGKAWKRGYLLYGPPGTGKSSLI 265 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~-----~~g~~~~rg~LL~GPPGtGKTsLa 265 (487)
.+|+++...+.+.+.+... -+..+..++ .+-...++.+++.+|+|+|||...
T Consensus 92 ~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 92 KSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCSGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 5788888877766655431 111111112 111123478999999999999653
No 394
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.12 E-value=0.013 Score=61.51 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.1
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-++|.|.||+||||+++.+|..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34689999999999999999999875
No 395
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.11 E-value=0.022 Score=49.37 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
-.+++.|++|+|||||+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 396
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.09 E-value=0.073 Score=57.23 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=23.6
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.+.-+.|.||.|+|||||++.+++.+.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 3445588999999999999999998773
No 397
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.09 E-value=0.022 Score=57.46 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.3
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCCc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNFD 275 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~~ 275 (487)
..-+.|.||+|+|||||++.||+.+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4458899999999999999999998654
No 398
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.08 E-value=0.02 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.7
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l 272 (487)
-+.|.||+|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 399
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.07 E-value=0.029 Score=58.27 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=29.6
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc----CCcEEEeecCc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELSS 283 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l----~~~v~~l~~~~ 283 (487)
.++.+++.|++|+||||++..+|..+ |..+..+++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 35678899999999999999999776 66676666553
No 400
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.05 E-value=0.015 Score=55.28 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=22.8
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.+.-+.|.||.|+|||||+++|++.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34558899999999999999999876
No 401
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.02 E-value=0.035 Score=55.72 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=29.3
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~ 281 (487)
|..++.-++|.|+||+|||+|+..+|... +.++..+++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 55555668999999999999999998764 566655544
No 402
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.00 E-value=0.016 Score=55.02 Aligned_cols=28 Identities=21% Similarity=0.289 Sum_probs=23.5
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
.+.-+.|.||.|+|||||+++|+..+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3445789999999999999999987743
No 403
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.99 E-value=0.027 Score=50.87 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=25.3
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~ 280 (487)
+.+.+.|++|+|||+++..++..+ ++.+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 357899999999999999999876 45554444
No 404
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.98 E-value=0.15 Score=45.25 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-+++.|++|+|||||+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999765
No 405
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.96 E-value=0.03 Score=50.93 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=19.1
Q ss_pred cceeeCCCCCcHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~ 270 (487)
-+++.|+||+|||+|+.++.+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999974
No 406
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.92 E-value=0.2 Score=50.25 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.7
Q ss_pred cceeeCCCCCcHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~ 270 (487)
-+.+.|++|+|||||+.++.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 588999999999999999998
No 407
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.90 E-value=0.019 Score=52.21 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=19.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~ 270 (487)
-.+++.|++|+|||+|+.++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4589999999999999999874
No 408
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.83 E-value=0.021 Score=54.45 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=22.3
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
.-+.|.||.|+|||||+++||+.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999999874
No 409
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.83 E-value=0.023 Score=52.93 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.7
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-+.|.||.|+|||||+++|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999986
No 410
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.78 E-value=0.11 Score=52.23 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=30.6
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCC---CcccceeeCCCCCcHHHHHH
Q 011374 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA---WKRGYLLYGPPGTGKSSLIA 266 (487)
Q Consensus 210 p~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~---~~rg~LL~GPPGtGKTsLa~ 266 (487)
..+|+++...+.+.+.+.+. -+..+..++....+ -.+.+++.+|+|+|||..+-
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~ 76 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEA---GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFV 76 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHH
Confidence 45688887777766665431 01111112221111 13569999999999997544
No 411
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.76 E-value=0.014 Score=54.91 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=22.8
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
+.-+.|.||.|+|||||+++|++.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 344789999999999999999987743
No 412
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.76 E-value=0.023 Score=60.29 Aligned_cols=26 Identities=12% Similarity=0.002 Sum_probs=23.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
..+.|.|++||||||+++++|..|+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 35788999999999999999999985
No 413
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.75 E-value=0.097 Score=52.60 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.1
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.-+.|.||||+|||||+.++++.+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 347799999999999999999865
No 414
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.75 E-value=0.038 Score=51.87 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=24.7
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~ 277 (487)
.-+.|.||+|+||||+++.++..++.++.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 34678899999999999999999987543
No 415
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.70 E-value=0.02 Score=55.32 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.1
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
+.-+.|.||.|+|||||+++|++.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 344789999999999999999998753
No 416
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.69 E-value=0.045 Score=64.66 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=23.4
Q ss_pred CCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 246 ~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+++.-+-|.||.|+|||||++++...+
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 445568899999999999999999877
No 417
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.68 E-value=0.12 Score=52.81 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=20.4
Q ss_pred ceeeCCCCCcHHHHHHHHHHHc
Q 011374 251 YLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l 272 (487)
.++.||||||||+|+..||+..
T Consensus 178 ~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 178 GMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp EEEEECTTCCHHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHHH
Confidence 8999999999999999999864
No 418
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.68 E-value=0.021 Score=53.45 Aligned_cols=26 Identities=31% Similarity=0.608 Sum_probs=22.7
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-+.|.||.|+|||||+++|++.+.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999998774
No 419
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.68 E-value=0.03 Score=49.18 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.7
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
-+.|.|+||+|||||+.++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999863
No 420
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.67 E-value=0.044 Score=57.07 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=29.7
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~ 282 (487)
|..++.-++|.|+||+|||+++..+|... +.++..+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 45555568999999999999999888765 5666666543
No 421
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.66 E-value=0.03 Score=51.58 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.7
Q ss_pred ccceeeCCCCCcHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~ 270 (487)
--+++.|++|+|||+|+.++.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3589999999999999999975
No 422
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.64 E-value=0.033 Score=48.98 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.9
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
..+++.|++|+|||||+.++.+.-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458999999999999999998643
No 423
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.62 E-value=0.068 Score=55.33 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=27.4
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~ 281 (487)
.++.+++.||+|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 34567888999999999999999887 445555554
No 424
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.61 E-value=0.038 Score=58.28 Aligned_cols=39 Identities=15% Similarity=-0.014 Sum_probs=29.4
Q ss_pred cCCCcccceeeCCCCCcHHHHHHHHHHHc----CCcEEEeecC
Q 011374 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELS 282 (487)
Q Consensus 244 g~~~~rg~LL~GPPGtGKTsLa~alA~~l----~~~v~~l~~~ 282 (487)
|.+.+.-++|.|+||+|||+|+..+|... +.++..+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 45555568999999999999999888765 4466666543
No 425
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.61 E-value=0.048 Score=54.85 Aligned_cols=32 Identities=34% Similarity=0.396 Sum_probs=25.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~ 280 (487)
.-+.|.|+||+|||||+.+++..+ +..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 357899999999999999999886 55554443
No 426
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.59 E-value=0.039 Score=54.30 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=28.3
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeecCc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~~~ 283 (487)
+.-+++.||+|+||||++..+|..+ +..+..+++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4457788999999999999999877 56666555543
No 427
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.59 E-value=0.02 Score=54.55 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=23.0
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
.+.-+.|.||.|+|||||+++|+..+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344588999999999999999998763
No 428
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.58 E-value=0.019 Score=54.23 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.8
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-+.|.||.|+|||||+++|++.+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 44578999999999999999999874
No 429
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.57 E-value=0.014 Score=53.75 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~ 270 (487)
--++|.|++|+|||||+.++.+
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999874
No 430
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.56 E-value=0.027 Score=54.65 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.6
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcC
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
.+.|.||+|+|||||+++|++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999774
No 431
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.54 E-value=0.027 Score=50.45 Aligned_cols=21 Identities=24% Similarity=0.626 Sum_probs=19.2
Q ss_pred cceeeCCCCCcHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~ 270 (487)
-++|.|+||+|||||+..+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999986
No 432
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.48 E-value=0.26 Score=49.39 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=30.9
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHH-----hcCCCcccceeeCCCCCcHHHHH
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKR-----VGKAWKRGYLLYGPPGTGKSSLI 265 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~-----~g~~~~rg~LL~GPPGtGKTsLa 265 (487)
.+|+++...+...+.+.+. -+..+..++. +-...++.+++.+|+|+|||..+
T Consensus 25 ~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp SCTGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred CCHhhCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 4688888777766665431 0111111221 11123478999999999999764
No 433
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.47 E-value=0.033 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
--++|.|++|+|||+|+.++.+.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 434
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.47 E-value=0.02 Score=55.09 Aligned_cols=26 Identities=38% Similarity=0.713 Sum_probs=22.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-+.|.||.|+|||||+++|++.+.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34478999999999999999998774
No 435
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.46 E-value=0.023 Score=54.99 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=23.1
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
+.-+.|.||.|+|||||+++|+..+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 345789999999999999999998743
No 436
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.46 E-value=0.023 Score=54.86 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=23.2
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
.+.-+.|.||.|+|||||+++|+..+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 345588999999999999999998763
No 437
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.42 E-value=0.023 Score=55.17 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=23.2
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
.+.-+.|.||.|+|||||+++|++.+.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344578999999999999999999874
No 438
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.41 E-value=0.098 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.8
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
-+.|.|+||+|||||..++.+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999863
No 439
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.35 E-value=0.032 Score=54.02 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=21.9
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+.-+.|.||.|+|||||++.|++.+
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4457899999999999999999974
No 440
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.33 E-value=0.032 Score=49.65 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-+.|.|++|+|||||+.++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999873
No 441
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.32 E-value=0.34 Score=48.74 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=31.4
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcCC---CcccceeeCCCCCcHHHHHH
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA---WKRGYLLYGPPGTGKSSLIA 266 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~~---~~rg~LL~GPPGtGKTsLa~ 266 (487)
.+|+++...+.+.+.+.+. -+..+..++....+ .++.+++.+|+|+|||..+-
T Consensus 37 ~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~ 92 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAY---GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 92 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHH
Confidence 4799988777776665431 01112222222111 23679999999999996554
No 442
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.31 E-value=0.022 Score=54.51 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=22.7
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44578999999999999999999874
No 443
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.27 E-value=0.023 Score=54.52 Aligned_cols=27 Identities=41% Similarity=0.491 Sum_probs=23.0
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
+.-+.|.||.|+|||||.++|++.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 344789999999999999999998753
No 444
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.24 E-value=0.03 Score=53.62 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.3
Q ss_pred cccceeeCCCCCcHHHHHHHHHHH
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
+.-+.|.||.|+|||||+++|++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345789999999999999999996
No 445
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.24 E-value=0.17 Score=50.85 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=30.3
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcC---CCcccceeeCCCCCcHHHHHH
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGK---AWKRGYLLYGPPGTGKSSLIA 266 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~---~~~rg~LL~GPPGtGKTsLa~ 266 (487)
.+|+++...+.+.+.+.+. -+..+..++...+ ..++.+++.+|+|+|||..+.
T Consensus 40 ~~f~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAY---GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHc---CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHH
Confidence 4688887777766655331 0111111222111 124569999999999998643
No 446
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.23 E-value=0.023 Score=55.33 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-+.|.||.|+|||||+++|++.+.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34478999999999999999998773
No 447
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.22 E-value=0.03 Score=56.69 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=23.9
Q ss_pred CcccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 247 ~~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
.+..++|.||.|+|||||+++|+..+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456789999999999999999999874
No 448
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.20 E-value=0.026 Score=57.17 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=21.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.-+.|.||.|||||||.++||..+
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 347799999999999999999977
No 449
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.19 E-value=0.024 Score=53.99 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=22.9
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
+.-+.|.||.|+|||||.++|+..+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344789999999999999999997743
No 450
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.18 E-value=0.031 Score=53.85 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=22.6
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-+.|.||.|+|||||+++|++.+.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999998774
No 451
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.17 E-value=0.071 Score=51.09 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.8
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
.+.|.|+||+|||||+.++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999865
No 452
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.17 E-value=0.035 Score=56.25 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=22.0
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
.-+.|.||.|||||||.++||..+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3477999999999999999998873
No 453
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.15 E-value=0.03 Score=60.00 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=22.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
..+.|.||+|+|||||+++||..++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 4478999999999999999999985
No 454
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.11 E-value=0.036 Score=56.13 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.0
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+.-+.|.||.|||||||.++||..+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3447799999999999999999877
No 455
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.09 E-value=0.072 Score=50.43 Aligned_cols=32 Identities=31% Similarity=0.600 Sum_probs=25.4
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc--CCcEEEeec
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL--NFDVYDLEL 281 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l--~~~v~~l~~ 281 (487)
.+++.|++|+||||++..+|..+ +..+..+++
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 46788999999999999999876 555555543
No 456
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.07 E-value=0.053 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=19.3
Q ss_pred cceeeCCCCCcHHHHHHH-HHHHc
Q 011374 250 GYLLYGPPGTGKSSLIAA-MANYL 272 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~a-lA~~l 272 (487)
-+++.|++|+|||||+.+ +.+..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 489999999999999998 54443
No 457
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.05 E-value=0.037 Score=56.42 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.0
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
.-+.|.||.|||||||.++||..+.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3477999999999999999999873
No 458
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.04 E-value=0.033 Score=56.63 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.0
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+.-+.|.||.|||||||.++||..+
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3447799999999999999999877
No 459
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.04 E-value=0.029 Score=56.07 Aligned_cols=26 Identities=19% Similarity=0.583 Sum_probs=23.4
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+..+++.||+|+|||||+++|++.+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45789999999999999999999874
No 460
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.03 E-value=0.033 Score=59.14 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=22.9
Q ss_pred CCCcccceeeCCCCCcHHHHHHH--HHHHc
Q 011374 245 KAWKRGYLLYGPPGTGKSSLIAA--MANYL 272 (487)
Q Consensus 245 ~~~~rg~LL~GPPGtGKTsLa~a--lA~~l 272 (487)
++.+..++|.||+|+|||||++. ++..+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45566799999999999999999 55554
No 461
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.03 E-value=0.084 Score=48.48 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.3
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.+++.|++|+|||||+.+++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999998863
No 462
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.03 E-value=0.049 Score=47.75 Aligned_cols=22 Identities=45% Similarity=0.614 Sum_probs=19.9
Q ss_pred ceeeCCCCCcHHHHHHHHHHHc
Q 011374 251 YLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l 272 (487)
.+|+||.|+|||+++.||.-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999998765
No 463
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.00 E-value=0.029 Score=54.22 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=22.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-+.|.||.|+|||||+++|++.+.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 44578999999999999999998763
No 464
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.00 E-value=0.034 Score=56.21 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.4
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-+.|.||.|||||||.++||..+.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34477999999999999999998773
No 465
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.99 E-value=0.026 Score=55.01 Aligned_cols=26 Identities=31% Similarity=0.662 Sum_probs=22.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-+.|.||.|+|||||+++|++.+.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34478999999999999999998874
No 466
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.97 E-value=0.047 Score=47.90 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.3
Q ss_pred cccceeeCCCCCcHHHHHHHHHH
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~ 270 (487)
..-+++.|++|+|||||+.++.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34589999999999999999976
No 467
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.97 E-value=0.026 Score=54.16 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-+.|.||.|+|||||+++|++.+.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34578999999999999999998863
No 468
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.96 E-value=0.24 Score=47.30 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
...++|.|++|+|||||+.++.+.-
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998653
No 469
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=92.95 E-value=0.13 Score=40.89 Aligned_cols=48 Identities=10% Similarity=-0.077 Sum_probs=36.3
Q ss_pred EeCCCCHHHHHHHHHHhhCcCCCCchHHHHHHHhhc-CCCHHHHHHHHh
Q 011374 386 HMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 433 (487)
Q Consensus 386 ~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 433 (487)
+-++|+.++|++|++.++.........+++.++..+ +||+|||.++|.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~ 55 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 55 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 457899999999999999754332233456666654 699999999884
No 470
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.93 E-value=0.026 Score=54.67 Aligned_cols=26 Identities=35% Similarity=0.655 Sum_probs=22.5
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-+.|.||.|+|||||+++|++.+.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34578999999999999999998773
No 471
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.92 E-value=0.024 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.8
Q ss_pred cceeeCCCCCcHHHHHHHHHHHcC
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
.+.|.||+|+|||||++.|+..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 477999999999999999999874
No 472
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.88 E-value=0.041 Score=49.04 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
--+++.|+||+|||+|+.++++.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999875
No 473
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.87 E-value=0.023 Score=53.75 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=20.7
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcC
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.|.||.|+|||||+++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 46889999999999999999874
No 474
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.86 E-value=0.045 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.5
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.-+.|.||+|+||||+++.++..+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999988
No 475
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.86 E-value=0.05 Score=51.32 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.4
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
.-|.|.|++|+||||+++.+++.++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34678899999999999999998754
No 476
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.83 E-value=0.056 Score=54.09 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.3
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.-+.|.||||+|||||+++++..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 347799999999999999999876
No 477
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.83 E-value=0.046 Score=47.95 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.6
Q ss_pred ccceeeCCCCCcHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMAN 270 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~ 270 (487)
--+++.|+||+|||||+.++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999864
No 478
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.80 E-value=0.033 Score=56.20 Aligned_cols=26 Identities=23% Similarity=0.585 Sum_probs=22.4
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-+.|.||.|||||||.++||+.+.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCC
Confidence 34477999999999999999998773
No 479
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.79 E-value=0.052 Score=47.93 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.7
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
.+++.|++|+|||||+.++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 480
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.78 E-value=0.038 Score=56.23 Aligned_cols=26 Identities=27% Similarity=0.485 Sum_probs=22.4
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHcC
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l~ 273 (487)
+.-+.|.||.|||||||.++||+.+.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 34478999999999999999998873
No 481
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.72 E-value=0.046 Score=51.12 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=21.0
Q ss_pred cceeeCCCCCcHHHHHHHHHHHc
Q 011374 250 GYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~l 272 (487)
-|.|.|++|+||||+++.++..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999999988
No 482
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=92.69 E-value=0.22 Score=52.85 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.2
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
-++|.|.||+|||||+.++.+.
T Consensus 43 kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 43 KVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp EEEEESSSCSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999754
No 483
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=92.69 E-value=0.66 Score=47.95 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=30.5
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHH-----HhcCCCcccceeeCCCCCcHHHHH
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYK-----RVGKAWKRGYLLYGPPGTGKSSLI 265 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~-----~~g~~~~rg~LL~GPPGtGKTsLa 265 (487)
.+|+.+...+.+.+.+.+. -+..+..++ .+-...++.+|+.||.|+|||...
T Consensus 92 ~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 4788888887766655330 011111111 111123478999999999999763
No 484
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.68 E-value=0.068 Score=53.80 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=25.0
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHcCCcEE
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l~~~v~ 277 (487)
.-+.|.||+|+|||||++.|++.+..+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 34789999999999999999999976653
No 485
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.67 E-value=0.11 Score=50.94 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=19.9
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-++|.|+||+|||+|+.++.+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999997654
No 486
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.65 E-value=0.039 Score=48.96 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.0
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
-+.|.|+||+|||||+.++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 487
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.62 E-value=0.057 Score=47.57 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.3
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
-.+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 488
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.60 E-value=0.057 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.8
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
-++|.|++|+|||+|+.++.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999998864
No 489
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.57 E-value=0.76 Score=47.92 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=22.1
Q ss_pred ceeeCCCCCcHHHHHHHHHHHcCC
Q 011374 251 YLLYGPPGTGKSSLIAAMANYLNF 274 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l~~ 274 (487)
++|.|++|+|||+|+..||+....
T Consensus 155 ~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 155 LPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 788899999999999999998865
No 490
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.55 E-value=0.043 Score=48.31 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.0
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
-+++.|+||+|||+|+..+++.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 491
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.55 E-value=0.053 Score=56.75 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.1
Q ss_pred CCCcccceeeCCCCCcHHHHHHHHHHHc
Q 011374 245 KAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 245 ~~~~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
...+.-+.|.||.|+|||||++.||+.+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4445568999999999999999999976
No 492
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.49 E-value=0.039 Score=49.42 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.3
Q ss_pred ccceeeCCCCCcHHHHHHHHHHH
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~ 271 (487)
.-+++.|++|+|||||+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999754
No 493
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.48 E-value=0.061 Score=48.25 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.6
Q ss_pred cceeeCCCCCcHHHHHHHHHHH
Q 011374 250 GYLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 250 g~LL~GPPGtGKTsLa~alA~~ 271 (487)
-++|.|++|+|||+|+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999888764
No 494
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.47 E-value=0.06 Score=48.63 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.0
Q ss_pred ccceeeCCCCCcHHHHHHHHHHHc
Q 011374 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 249 rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
.-+++.|++|+|||||+.++.+.-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458999999999999999998753
No 495
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.46 E-value=0.093 Score=48.61 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=23.9
Q ss_pred ceeeCCCCCcHHHHHHHHHHHc--CCcEEEe
Q 011374 251 YLLYGPPGTGKSSLIAAMANYL--NFDVYDL 279 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~l--~~~v~~l 279 (487)
|.|-|+.|+||||+++.++..| +.+++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 5678999999999999999998 4555543
No 496
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=92.44 E-value=0.35 Score=48.60 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=29.4
Q ss_pred CCccccccCHHHHHHHHHHHHHHHhcHHHHHHhcC---CCcccceeeCCCCCcHHHH
Q 011374 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGK---AWKRGYLLYGPPGTGKSSL 264 (487)
Q Consensus 211 ~~fd~l~g~~~~K~~i~~~l~~fl~~~~~y~~~g~---~~~rg~LL~GPPGtGKTsL 264 (487)
.+|+++...+.+.+.+... -+..+..++...+ ..++.+++.+|+|+|||..
T Consensus 15 ~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~ 68 (417)
T 2i4i_A 15 ESFSDVEMGEIIMGNIELT---RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 68 (417)
T ss_dssp SSGGGSCCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred CCHhhCCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHH
Confidence 4688887777666655321 0111111222111 1246799999999999973
No 497
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.44 E-value=0.039 Score=53.38 Aligned_cols=25 Identities=32% Similarity=0.713 Sum_probs=22.1
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+.-+.|.||.|+|||||.++|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4457899999999999999999876
No 498
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.41 E-value=0.038 Score=49.09 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.2
Q ss_pred ceeeCCCCCcHHHHHHHHHHH
Q 011374 251 YLLYGPPGTGKSSLIAAMANY 271 (487)
Q Consensus 251 ~LL~GPPGtGKTsLa~alA~~ 271 (487)
+++.|++|+|||||+.++.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999864
No 499
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.35 E-value=0.11 Score=50.99 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=26.4
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l---~~~v~~l~~ 281 (487)
++.+.+.||+|+||||++..+|..+ +..+..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4457788999999999999999876 455555444
No 500
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.34 E-value=0.032 Score=56.35 Aligned_cols=25 Identities=24% Similarity=0.545 Sum_probs=21.9
Q ss_pred cccceeeCCCCCcHHHHHHHHHHHc
Q 011374 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (487)
Q Consensus 248 ~rg~LL~GPPGtGKTsLa~alA~~l 272 (487)
+.-+.|.||.|||||||.++||+.+
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3447799999999999999999876
Done!