BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011375
         (487 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
 pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
 pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
 pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
          Length = 349

 Score = 33.5 bits (75), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 18/111 (16%)

Query: 384 QIEDAILRADRLGVKVL-SLAALNKNESLNGGGTLFVDKHPNLKVRVVH----------G 432
           +I D ++R+  L + V+ S+AAL     + G      D H  L+ R++            
Sbjct: 129 EIADMLVRSGALDIIVIDSVAALVPRAEIEG---EMGDSHVGLQARLMSQALRKMTGALN 185

Query: 433 NTCTAAVILNELPKDVKEVFLTGATSKLGRAIALY----LCRKRVRVLKDS 479
           N+ T A+ +NEL + +  +F +  T+  G+A+  Y    L  +R+  LKD 
Sbjct: 186 NSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236


>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
 pdb|1G19|A Chain A, Structure Of Reca Protein
 pdb|1MO3|A Chain A, Reca-Adp Complex
 pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
 pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
 pdb|1MO6|A Chain A, Reca-datp-mg Complex
          Length = 350

 Score = 32.0 bits (71), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 18/111 (16%)

Query: 384 QIEDAILRADRLGVKVL-SLAALNKNESLNGGGTLFVDKHPNLKVRVVH----------G 432
           +I D ++R+  L + V+ S+AAL     L G      D H  L+ R++            
Sbjct: 128 EIADMLIRSGALDIVVIDSVAALVPRAELEG---EMGDSHVGLQARLMSQALRKMTGALN 184

Query: 433 NTCTAAVILNELPKDVKEVFLTGATSKLGRAIALY----LCRKRVRVLKDS 479
           N+ T A+ +N+L   +  +F +  T+  G+A+  Y    +  +RV  LKD 
Sbjct: 185 NSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDG 235


>pdb|1UBC|A Chain A, Structure Of Reca Protein
 pdb|1UBE|A Chain A, Msreca-Adp Complex
 pdb|1UBF|A Chain A, Msreca-Atpgs Complex
 pdb|1UBG|A Chain A, Msreca-Datp Complex
 pdb|2G88|A Chain A, Msreca-datp Complex
 pdb|2ODN|A Chain A, Msreca-Datp Complex
 pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex
 pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95%
 pdb|2OEP|A Chain A, Msreca-adp-complex
 pdb|2OES|A Chain A, Msreca-Native-Ssb
 pdb|2OFO|A Chain A, Msreca-native
 pdb|2ZR7|A Chain A, Msreca Native Form Ii'
 pdb|2ZRM|A Chain A, Msreca Datp Form Iv
 pdb|2ZRN|A Chain A, Msreca Form Iv
 pdb|2ZRO|A Chain A, Msreca Adp Form Iv
 pdb|2ZRP|A Chain A, Msreca Datp Form Ii'
          Length = 349

 Score = 32.0 bits (71), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 18/111 (16%)

Query: 384 QIEDAILRADRLGVKVL-SLAALNKNESLNGGGTLFVDKHPNLKVRVVH----------G 432
           +I D ++R+  L + V+ S+AAL     + G      D H  L+ R++            
Sbjct: 129 EIADMLVRSGALDIIVIDSVAALVPRAEIEG---EMGDSHVGLQARLMSQALRKMTGALN 185

Query: 433 NTCTAAVILNELPKDVKEVFLTGATSKLGRAIALY----LCRKRVRVLKDS 479
           N+ T A+ +N+L + +  +F +  T+  G+A+  Y    L  +R+  LKD 
Sbjct: 186 NSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236


>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
           Peptide Synthetase From Mycobacterium Tuberculosis
          Length = 478

 Score = 30.4 bits (67), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 24/44 (54%)

Query: 428 RVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRK 471
           R +  +T   AV L     +++ V LTGAT  LGR + L L R+
Sbjct: 53  RFIDADTLATAVNLPGPSPELRTVLLTGATGFLGRYLVLELLRR 96


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.465 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,482,123
Number of Sequences: 62578
Number of extensions: 577276
Number of successful extensions: 1829
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1828
Number of HSP's gapped (non-prelim): 4
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)