BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011375
(487 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H1Z0|CER3_ARATH Protein ECERIFERUM 3 OS=Arabidopsis thaliana GN=CER3 PE=1 SV=1
Length = 632
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/481 (66%), Positives = 376/481 (78%), Gaps = 5/481 (1%)
Query: 1 MDAPLAAWPWDNLGMFKYVLYGPLVGKALYSWVYE-DKRIEYWCLHILIISVLRGLIHIL 59
M A L+AWPW+N G KY+LY PL + +YSWVYE D WC+HILII L+ L+H L
Sbjct: 1 MVAFLSAWPWENFGNLKYLLYAPLAAQVVYSWVYEEDISKVLWCIHILIICGLKALVHEL 60
Query: 60 WNSFSNMLFLNRARQINQRGVDFKQIDNEWNWDNFILLQAAIASMGYYIFP----CSESL 115
W+ F+NMLF+ R +IN +G+DFKQID+EW+WDN+I+LQA I S+ Y+ P SL
Sbjct: 61 WSVFNNMLFVTRTLRINPKGIDFKQIDHEWHWDNYIILQAIIVSLICYMSPPLMMMINSL 120
Query: 116 PRWNTKGFIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATL 175
P WNTKG IAL +LHV SEPLYY LHR FHRN Y F HYHS HHSSPVP TAG+ATL
Sbjct: 121 PLWNTKGLIALIVLHVTFSEPLYYFLHRSFHRNNYFFTHYHSFHHSSPVPHPMTAGNATL 180
Query: 176 LEHIVLSAIVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFL 235
LE+I+L + +P++G + G GS+S IYGY +MFDF+RCLGHCNVEI H+ FE P L
Sbjct: 181 LENIILCVVAGVPLIGCCLFGVGSLSAIYGYAVMFDFMRCLGHCNVEIFSHKLFEILPVL 240
Query: 236 RYLLYTPTYHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENVRVPDFV 295
RYL+YTPTYHSLHH E +NFCLFMPLFD LG+T N SWE KKI ++GE RVP+FV
Sbjct: 241 RYLIYTPTYHSLHHQEMGTNFCLFMPLFDVLGDTQNPNSWELQKKIRLSAGERKRVPEFV 300
Query: 296 FLAHVVDVTASMHPPFVFRSLASLPYSPKLFMLPFWPLAFSAMFALWAWSKTFLISFYWL 355
FLAH VDV ++MH PFVFRS AS+PY+ ++F+LP WP F M +WAWSKTFL SFY L
Sbjct: 301 FLAHGVDVMSAMHAPFVFRSFASMPYTTRIFLLPMWPFTFCVMLGMWAWSKTFLFSFYTL 360
Query: 356 RGRLHQTWAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGG 415
R L QTW VPR+GFQYFLPFA GIN QIE AILRAD++GVKV+SLAALNKNE+LNGGG
Sbjct: 361 RNNLCQTWGVPRFGFQYFLPFATKGINDQIEAAILRADKIGVKVISLAALNKNEALNGGG 420
Query: 416 TLFVDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRV 475
TLFV+KHP+L+VRVVHGNT TAAVIL E+PKDV EVFLTGATSKLGRAIALYLCR+ VRV
Sbjct: 421 TLFVNKHPDLRVRVVHGNTLTAAVILYEIPKDVNEVFLTGATSKLGRAIALYLCRRGVRV 480
Query: 476 L 476
L
Sbjct: 481 L 481
>sp|F4HVY0|CER1_ARATH Protein ECERIFERUM 1 OS=Arabidopsis thaliana GN=CER1 PE=1 SV=1
Length = 625
Score = 284 bits (727), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 171/472 (36%), Positives = 260/472 (55%), Gaps = 5/472 (1%)
Query: 5 LAAWPWDNLGMFKYVLYGPLVGKALYSWVYED-KRIEYWCLHILIISVLRGLIHILWNSF 63
L WPW LG FKY++ P + Y +V +D ++ + + + R L + +W S
Sbjct: 8 LTDWPWTPLGSFKYIVIAPWAVHSTYRFVTDDPEKRDLGYFLVFPFLLFRILHNQVWISL 67
Query: 64 SNMLFLNRARQINQRGVDFKQIDNEWNWDNFILLQAAIASMGYYIFPCSESLPRWNTKGF 123
S + R+I +G+DF Q+D E NWD+ IL + +G + P ++ LP W T G
Sbjct: 68 SRYYTSSGKRRIVDKGIDFNQVDRETNWDDQILFNGVLFYIGINLLPEAKQLPWWRTDGV 127
Query: 124 IALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSA 183
+ ++H E LYY LH+ H + +L+ YHS HHSS V + T+ EHI
Sbjct: 128 LMAALIHTGPVEFLYYWLHKALHHH-FLYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFI 186
Query: 184 IVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPT 243
+ AIP+L + + SI GYI+ DF+ +GHCN E+IP R F FP L++L YTP+
Sbjct: 187 LFAIPLLTTLLTKTASIISFAGYIIYIDFMNNMGHCNFELIPKRLFHLFPPLKFLCYTPS 246
Query: 244 YHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENVRVPDFVFLAHVVDV 303
YHSLHHT+ +N+ LFMPL+D + T++ + ++K T G+++ D V L H+
Sbjct: 247 YHSLHHTQFRTNYSLFMPLYDYIYGTMDESTDTLYEK-TLERGDDIV--DVVHLTHLTTP 303
Query: 304 TASMHPPFVFRSLASLPYSPKLFMLPFWPLAFSAMFALWAWSKTFLISFYWLRGRLHQTW 363
+ H S AS P++ + FM WP +M +++ F+ Q+W
Sbjct: 304 ESIYHLRIGLASFASYPFAYRWFMRLLWPFTSLSMIFTLFYARLFVAERNSFNKLNLQSW 363
Query: 364 AVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHP 423
+PRY QY L + + IN IE AIL AD+ GVKVLSL +N+ E LN G +++ HP
Sbjct: 364 VIPRYNLQYLLKWRKEAINNMIEKAILEADKKGVKVLSLGLMNQGEELNRNGEVYIHNHP 423
Query: 424 NLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRV 475
++KVR+V G+ AAV++N +PK V +TG +K+ IA LC++ V+V
Sbjct: 424 DMKVRLVDGSRLAAAVVINSVPKATTSVVMTGNLTKVAYTIASALCQRGVQV 475
>sp|F4HVX7|CERL1_ARATH Protein CER1-like 1 OS=Arabidopsis thaliana GN=At1g02190 PE=2 SV=1
Length = 627
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 165/478 (34%), Positives = 257/478 (53%), Gaps = 10/478 (2%)
Query: 5 LAAWPWDNLGMFKYVLYGPLVGKALYSWVYE-DKRIEYWCLHILIISVLRGLIHILWNSF 63
L WPW LG FKY+L PLV +++S+V D+ + L I+++ + R + +W S
Sbjct: 8 LTEWPWSPLGSFKYLLVAPLVMASMHSYVTAVDEEKDLSRLMIVVLMLWRIVHSQIWISV 67
Query: 64 SNMLFLNRARQINQRGVDFKQIDNEWNWDNFILLQAAIASMGYYIFPCSESLPRWNTKGF 123
S +I + ++F+Q+D E WD+ ++ + + P + LP W G
Sbjct: 68 SRQRTAKGTNKIVDKPIEFEQVDRERTWDDQVIFNTLLMYLANIKLPGASHLPPWRLDGA 127
Query: 124 IALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSA 183
I + +LH E LYY HR H + +L+ YHS HHSS V + T+ EHI +
Sbjct: 128 ILMALLHAGPVEFLYYWFHRALHHH-FLYSRYHSHHHSSIVTEPITSVVHPFAEHIAYTL 186
Query: 184 IVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPT 243
+ AIP++ +S+ G SI I GYI DF+ +GHCN E+ P R F FP L++L YTP+
Sbjct: 187 LFAIPMVTASLCGILSIVSIMGYITYIDFMNNMGHCNFELFPKRLFHLFPPLKFLCYTPS 246
Query: 244 YHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENVRVPDFVFLAHVVDV 303
+HSLHHT+ +N+ LFMP++D + T ++ + +++ E+ PD + L H+
Sbjct: 247 FHSLHHTQFRTNYSLFMPIYDFIYGTTDNLTDSLYERSLEIEEES---PDVIHLTHLTTH 303
Query: 304 TASMHPPFVFRSLASLPY--SPKLFMLPF-WPLAFSAMFALWAWS--KTFLISFYWLRGR 358
+ F SL+S P P ++ F WP FAL + +TF+ LR
Sbjct: 304 NSIYQMRLGFPSLSSCPLWSRPPWYLTCFMWPFTLLCSFALTSAIPLRTFVFERNRLRDL 363
Query: 359 LHQTWAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLF 418
+ +P++ F Y IN IE+AIL AD GVKV+SL +N E LNG G ++
Sbjct: 364 TVHSHLLPKFSFHYKSQRHHESINTIIEEAILEADEKGVKVMSLGLMNNREELNGSGEMY 423
Query: 419 VDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVL 476
V K+P LK+R+V G++ A V++N +PK+ E+ G +K+ A+ LC+K V+V+
Sbjct: 424 VQKYPKLKIRLVDGSSMAATVVINNIPKEATEIVFRGNLTKVASAVVFALCQKGVKVV 481
>sp|F4IR05|CERL2_ARATH Protein CER1-like 2 OS=Arabidopsis thaliana GN=At2g37700 PE=2 SV=1
Length = 613
Score = 265 bits (677), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 166/473 (35%), Positives = 256/473 (54%), Gaps = 8/473 (1%)
Query: 5 LAAWPWDNLGMFKYVLYGPLVGKALYSWVYEDKRIEYWCLHILIISVLRGLIHILWNSFS 64
L WPW LG FKY+L PLV ++YS Y R ++ L I+ ++V R + +W S S
Sbjct: 8 LTDWPWTPLGSFKYLLLAPLVFDSIYS--YATIR-DHEKLLIVAVTVWRIVHSQIWISLS 64
Query: 65 NMLFLNRARQINQRGVDFKQIDNEWNWDNFILLQAAIASMGYYIFPCSESLPRWNTKGFI 124
++I + ++F Q+D E WD+ I+ I + + ++P W T G I
Sbjct: 65 RYQTAKGTKRILNKSIEFDQVDRERTWDDQIIFNTLIVYLTKVYVSGTSTIPFWRTDGVI 124
Query: 125 ALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAI 184
+ +LH E +YY HR H + +L+ YHS HHSS V + T+ EHI + I
Sbjct: 125 LVALLHAGPVEFIYYWFHRALHHH-FLYSRYHSHHHSSIVTEPITSVVHPFAEHIGYTLI 183
Query: 185 VAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTY 244
+ +P++ + + G S+ I Y+ DF+ +GHCN E+IP F P L++L YTP++
Sbjct: 184 LGLPLITTFMCGTVSVVSIALYLTYIDFMNNMGHCNFELIPKFLFSLLPPLKFLCYTPSF 243
Query: 245 HSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENVRVPDFVFLAHVVDVT 304
HSLHHT+ +N+ LFMP++D + T + S D TS E + PD + L H+ +
Sbjct: 244 HSLHHTQFRTNYSLFMPMYDYIYGTTDECS--DSLYETSLEKEEEK-PDAIHLTHLTSLD 300
Query: 305 ASMHPPFVFRSLASLPYSPKLFMLPFWPLAFSAMFALWAWS-KTFLISFYWLRGRLHQTW 363
+ H F SL+S P S + ++ P A F L ++S +TF++ R +
Sbjct: 301 SIYHLRLGFASLSSHPLSSRCYLFLMKPFALILSFILRSFSFQTFVVERNRFRDLTLHSH 360
Query: 364 AVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHP 423
+P++ Y + INK IE AIL AD+ GVKV+SL LN+ E LNG G ++V +HP
Sbjct: 361 LLPKFSSHYMSHQQKECINKMIEAAILEADKKGVKVMSLGLLNQGEELNGYGEMYVRRHP 420
Query: 424 NLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVL 476
LK+R+V G + A V+L+ +P KEV G +K+ RAI LC+ ++V+
Sbjct: 421 KLKIRIVDGGSLAAEVVLHSIPVGTKEVLFRGQITKVARAIVFSLCQNAIKVM 473
>sp|Q9AST3|SBH2_ARATH Sphinganine C(4)-monooxygenase 2 OS=Arabidopsis thaliana GN=SBH2
PE=1 SV=1
Length = 259
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 13/138 (9%)
Query: 128 ILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAI-VA 186
I+ + V + Y +HR+ H NK+L+ H HS HH VP A + LE ++L I A
Sbjct: 99 IIAMLVIDTWQYFIHRYMHLNKFLYKHIHSQHHRLIVPYSYGALYNHPLEGLLLDTIGGA 158
Query: 187 IPILGSSIIGYGSISLIYGYILMFDFLRCL-GHCNVEIIPHRWFETFPFLRYLLYTPTYH 245
+ L S + +I + F ++ + HC + W PF + YH
Sbjct: 159 LSFLFSGMSPRTAI-----FFFSFATIKTVDDHCGL------WLPGNPFHIFFSNNSAYH 207
Query: 246 SLHHTEKDSNFCLFMPLF 263
+HH + + P F
Sbjct: 208 DVHHQLYGTKYNFSQPFF 225
>sp|P68435|ERG3_MYCTU C-5 sterol desaturase OS=Mycobacterium tuberculosis GN=erg3 PE=3
SV=1
Length = 300
Score = 38.9 bits (89), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 31/200 (15%)
Query: 90 NWDNFILLQAAIASMGYYIFPCSESLPRWNTKGFIALQILHVAVSEPLYYVLHRHFHRNK 149
W + LL A++ Y+ P S RW T ++ + + LYY HR HR +
Sbjct: 65 GWKSLALL--GYAAIYAYLAPWQLSAHRWYT------WVIAIVGVDLLYYSYHRIAHRVR 116
Query: 150 YLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPILGSS---IIGYGSISLIYGY 206
++ H HHSS TA + V +P++G + S++LIY +
Sbjct: 117 LIWAT-HQAHHSSEYFNFATALRQKWNNSGEILMWVPLPLMGLPPWMVFCSWSLNLIYQF 175
Query: 207 ILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTEK----DSNFCLFMPL 262
+ + ++ +P RWFE ++ TP++H +HH D N+ + +
Sbjct: 176 WVHTE--------RIDRLP-RWFE------FVFNTPSHHRVHHGMDPVYLDKNYGGILII 220
Query: 263 FDALGNTLNSKSWEDHKKIT 282
+D L + + + H +T
Sbjct: 221 WDRLFGSFQPELFRPHYGLT 240
>sp|P68434|ERG3_MYCBO C-5 sterol desaturase OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=erg3 PE=3 SV=1
Length = 300
Score = 38.9 bits (89), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 31/200 (15%)
Query: 90 NWDNFILLQAAIASMGYYIFPCSESLPRWNTKGFIALQILHVAVSEPLYYVLHRHFHRNK 149
W + LL A++ Y+ P S RW T ++ + + LYY HR HR +
Sbjct: 65 GWKSLALL--GYAAIYAYLAPWQLSAHRWYT------WVIAIVGVDLLYYSYHRIAHRVR 116
Query: 150 YLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPILGSS---IIGYGSISLIYGY 206
++ H HHSS TA + V +P++G + S++LIY +
Sbjct: 117 LIWAT-HQAHHSSEYFNFATALRQKWNNSGEILMWVPLPLMGLPPWMVFCSWSLNLIYQF 175
Query: 207 ILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTEK----DSNFCLFMPL 262
+ + ++ +P RWFE ++ TP++H +HH D N+ + +
Sbjct: 176 WVHTE--------RIDRLP-RWFE------FVFNTPSHHRVHHGMDPVYLDKNYGGILII 220
Query: 263 FDALGNTLNSKSWEDHKKIT 282
+D L + + + H +T
Sbjct: 221 WDRLFGSFQPELFRPHYGLT 240
>sp|Q8VYI1|SBH1_ARATH Sphinganine C(4)-monooxygenase 1 OS=Arabidopsis thaliana GN=SBH1
PE=1 SV=1
Length = 260
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 13/127 (10%)
Query: 139 YVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAI-VAIPILGSSIIGY 197
Y +HR+ H+NK+L+ H HS HH VP A + +E ++L I A+ L S +
Sbjct: 111 YFMHRYMHQNKFLYKHIHSQHHRLIVPYAYGALYNHPVEGLLLDTIGGALSFLVSGMSPR 170
Query: 198 GSISLIYGYILMFDFLRCL-GHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTEKDSNF 256
SI + F ++ + HC + W F YH +HH + +
Sbjct: 171 TSI-----FFFSFATIKTVDDHCGL------WLPGNLFHMVFKNNSAYHDIHHQLYGTKY 219
Query: 257 CLFMPLF 263
P F
Sbjct: 220 NFSQPFF 226
>sp|Q9GKT2|CE004_MACFA Uncharacterized protein C5orf4 homolog OS=Macaca fascicularis
GN=QccE-20373 PE=2 SV=1
Length = 333
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 30/191 (15%)
Query: 110 PCSESLPRWNTKGFIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPT 169
PC LP ++ F+ + + E L+Y HR H + + H HH P
Sbjct: 160 PCRRELPTFH--WFLLELAIFTLIEEVLFYYSHRLLHHPTF-YKKIHKKHHEWTAPIGVI 216
Query: 170 AGHATLLEHIVLS---AIVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPH 226
+ +A +EH+V + AIV ++GS + SI++ + L+ + + HC +
Sbjct: 217 SLYAHPIEHVVSNMLPAIVGPLVMGSHL---SSITMWFSLALI---ITTISHCGYHL--- 267
Query: 227 RWFETFPFLRYLLYTPTYHSLHHTEKDSNFCLFMPLFDALGNT----LNSKSWEDHKKIT 282
PFL +P +H HH + + + + + + D L T +K++E H +
Sbjct: 268 ------PFLP----SPEFHDYHHLKFNQCYGV-LGVLDHLHGTDTMFKQTKAYEKHVLLL 316
Query: 283 SASGENVRVPD 293
+ + +PD
Sbjct: 317 GFTPLSESIPD 327
>sp|P25970|Y5909_MYXXD Uncharacterized oxidoreductase MXAN_5909 OS=Myxococcus xanthus
(strain DK 1622) GN=MXAN_5909 PE=3 SV=2
Length = 253
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 449 KEVFLTGATSKLGRAIALYLCRKRVRVLKDSRKF 482
+ +TGA+S LGR +AL+L R+ VRV R+
Sbjct: 7 RTALVTGASSGLGRGLALWLARRGVRVFAAGRRL 40
>sp|P38992|SUR2_YEAST Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SUR2 PE=1 SV=1
Length = 349
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 23/150 (15%)
Query: 139 YVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPILGSSIIGYG 198
Y LHR H NK L+ +HS+HH VP A +E +L LG+ I
Sbjct: 173 YFLHRLMHMNKTLYKWFHSVHHELYVPYAYGALFNNPVEGFLLDT------LGTGIAMTL 226
Query: 199 SISLIYGYILMFDFLRCL---GHCN--VEIIPHRWFETFPFLRYLLYTPTYHSLHHTE-- 251
+ I++F F HC + + P +W FP YH +HH +
Sbjct: 227 THLTHREQIILFTFATMKTVDDHCGYALPLDPFQWL--FP------NNAVYHDIHHQQFG 278
Query: 252 KDSNFCL-FMPLFDALGNTLNSKSWEDHKK 280
+NF F +D L T N K +E+++K
Sbjct: 279 IKTNFAQPFFTFWDNLFQT-NFKGFEEYQK 307
>sp|A8M7V5|RECA_SALAI Protein RecA OS=Salinispora arenicola (strain CNS-205) GN=recA PE=3
SV=1
Length = 348
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 18/111 (16%)
Query: 384 QIEDAILRADRLGVKVL-SLAALNKNESLNGGGTLFVDKHPNLKVRV----------VHG 432
+I D ++R+ L + ++ S+AAL + G D H L+ R+ V
Sbjct: 128 EIADMLVRSGALDIIIIDSVAALVPRAEIEG---EMGDSHVGLQARLMSQALRKMTGVLS 184
Query: 433 NTCTAAVILNELPKDVKEVFLTGATSKLGRAIALY----LCRKRVRVLKDS 479
NT T A+ +N+L + + +F + T+ GRA+ Y L +R+ LKD
Sbjct: 185 NTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDVRRIESLKDG 235
>sp|P0A5U4|RECA_MYCTU Protein RecA OS=Mycobacterium tuberculosis GN=recA PE=1 SV=1
Length = 790
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 384 QIEDAILRADRLGVKVL-SLAALNKNESLNGGGTLFVDKHPNLKVRVVH----------G 432
+I D ++R+ L + V+ S+AAL L G D H L+ R++
Sbjct: 128 EIADMLIRSGALDIVVIDSVAALVPRAELEG---EMGDSHVGLQARLMSQALRKMTGALN 184
Query: 433 NTCTAAVILNELPKDVKEVFLTGATSKLGRAIALY----LCRKRVRVLKDS 479
N+ T A+ +N+L + +F + T+ G+A+ Y + +RV LKD
Sbjct: 185 NSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDG 235
>sp|P0A5U5|RECA_MYCBO Protein RecA OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=recA PE=3 SV=1
Length = 790
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 384 QIEDAILRADRLGVKVL-SLAALNKNESLNGGGTLFVDKHPNLKVRVVH----------G 432
+I D ++R+ L + V+ S+AAL L G D H L+ R++
Sbjct: 128 EIADMLIRSGALDIVVIDSVAALVPRAELEG---EMGDSHVGLQARLMSQALRKMTGALN 184
Query: 433 NTCTAAVILNELPKDVKEVFLTGATSKLGRAIALY----LCRKRVRVLKDS 479
N+ T A+ +N+L + +F + T+ G+A+ Y + +RV LKD
Sbjct: 185 NSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDG 235
>sp|O17554|ALKMO_CAEEL Alkylglycerol monooxygenase homolog OS=Caenorhabditis elegans
GN=BE10.2 PE=3 SV=2
Length = 505
Score = 33.1 bits (74), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 24/160 (15%)
Query: 137 LYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLS---AIVAIPILGSS 193
+YY+ HR H + F H++HHSS TA ++ L+ I A I S
Sbjct: 140 MYYLGHRAVHEAGF-FWGLHTIHHSSEYYNFSTALRQAAIQDAGLAIYDCIQAFFIPPSI 198
Query: 194 IIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTEK- 252
+ + S I+ +I+ + +G L + TP++H +HH
Sbjct: 199 FLVHRYFSEIFQFIMHTSLVDTMGP----------------LGLVFNTPSHHRVHHGRNP 242
Query: 253 ---DSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENV 289
D N+ ++D + NT ++ +D + EN
Sbjct: 243 YCIDKNYGGVFIIWDKMFNTFEAERHDDPPIYGLVTNENT 282
>sp|P62219|RECA_MYCPA Protein RecA OS=Mycobacterium paratuberculosis (strain ATCC BAA-968
/ K-10) GN=recA PE=3 SV=1
Length = 350
Score = 32.3 bits (72), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 18/111 (16%)
Query: 384 QIEDAILRADRLGVKVL-SLAALNKNESLNGGGTLFVDKHPNLKVRVVH----------G 432
+I D ++R+ L + V+ S+AAL L G D H L+ R++
Sbjct: 128 EIADMLIRSGALDILVIDSVAALVPRAELEG---EMGDSHVGLQARLMSQALRKMTGALN 184
Query: 433 NTCTAAVILNELPKDVKEVFLTGATSKLGRAIALY----LCRKRVRVLKDS 479
N+ T A+ +N+L + + +F + T+ G+A+ Y + +R+ LKD
Sbjct: 185 NSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDG 235
>sp|A0QIR6|RECA_MYCA1 Protein RecA OS=Mycobacterium avium (strain 104) GN=recA PE=3 SV=1
Length = 350
Score = 32.3 bits (72), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 18/111 (16%)
Query: 384 QIEDAILRADRLGVKVL-SLAALNKNESLNGGGTLFVDKHPNLKVRVVH----------G 432
+I D ++R+ L + V+ S+AAL L G D H L+ R++
Sbjct: 128 EIADMLIRSGALDILVIDSVAALVPRAELEG---EMGDSHVGLQARLMSQALRKMTGALN 184
Query: 433 NTCTAAVILNELPKDVKEVFLTGATSKLGRAIALY----LCRKRVRVLKDS 479
N+ T A+ +N+L + + +F + T+ G+A+ Y + +R+ LKD
Sbjct: 185 NSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDG 235
>sp|P62213|RECA_CORDI Protein RecA OS=Corynebacterium diphtheriae (strain ATCC 700971 /
NCTC 13129 / Biotype gravis) GN=recA PE=3 SV=1
Length = 372
Score = 32.3 bits (72), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 18/112 (16%)
Query: 384 QIEDAILRADRLGVKVL-SLAALNKNESLNGGGTLFVDKHPNLKVRVVHG---------- 432
+I D ++R+ + + V+ S+AAL + G D H L+ R++
Sbjct: 138 EIADMLVRSGAIDIIVIDSVAALTPKAEIEG---EMGDSHVGLQARLMSQALRKMTGALY 194
Query: 433 NTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYL---CR-KRVRVLKDSR 480
N+ T A+ +N+L + + +F + T+ G+A+ Y C +R++ LKD +
Sbjct: 195 NSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQ 246
>sp|C3PGY9|RECA_CORA7 Protein RecA OS=Corynebacterium aurimucosum (strain ATCC 700975 /
DSM 44827 / CN-1) GN=recA PE=3 SV=1
Length = 377
Score = 32.3 bits (72), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 18/112 (16%)
Query: 384 QIEDAILRADRLGVKVL-SLAALNKNESLNGGGTLFVDKHPNLKVRVVHG---------- 432
+I D ++R+ + + V+ S+AAL + G D H L+ R++
Sbjct: 137 EIADMLVRSGAIDIIVIDSVAALTPKAEIEG---EMGDSHVGLQARLMSQALRKMTGALY 193
Query: 433 NTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYL---CR-KRVRVLKDSR 480
N+ T A+ +N+L + + +F + T+ G+A+ Y C +R++ LKD +
Sbjct: 194 NSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGQ 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.141 0.464
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,044,320
Number of Sequences: 539616
Number of extensions: 7796480
Number of successful extensions: 22064
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 22020
Number of HSP's gapped (non-prelim): 64
length of query: 487
length of database: 191,569,459
effective HSP length: 121
effective length of query: 366
effective length of database: 126,275,923
effective search space: 46216987818
effective search space used: 46216987818
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)