Query 011375
Match_columns 487
No_of_seqs 288 out of 1424
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 00:39:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02869 fatty aldehyde decarb 100.0 1E-160 3E-165 1278.0 40.4 480 2-486 5-487 (620)
2 KOG0873 C-4 sterol methyl oxid 100.0 7.1E-35 1.5E-39 288.4 15.4 236 26-273 11-260 (283)
3 COG3000 ERG3 Sterol desaturase 100.0 2.6E-28 5.7E-33 244.2 21.2 151 123-283 95-247 (271)
4 KOG0872 Sterol C5 desaturase [ 99.9 6.1E-22 1.3E-26 194.5 13.0 142 123-279 128-269 (312)
5 KOG0874 Sphingolipid hydroxyla 99.8 2.2E-22 4.8E-27 192.3 3.3 148 123-280 122-273 (287)
6 PF04116 FA_hydroxylase: Fatty 99.7 7.8E-18 1.7E-22 145.0 7.5 112 129-250 3-114 (114)
7 PLN02434 fatty acid hydroxylas 99.1 2.7E-09 5.7E-14 105.5 15.8 135 123-273 83-230 (237)
8 PRK14982 acyl-ACP reductase; P 98.5 1.1E-06 2.4E-11 91.4 12.4 163 294-477 2-186 (340)
9 KOG0539 Sphingolipid fatty aci 97.7 0.00012 2.6E-09 71.0 8.8 134 124-274 84-234 (240)
10 PRK07424 bifunctional sterol d 97.5 0.00029 6.2E-09 75.2 8.9 140 128-272 13-175 (406)
11 PLN02601 beta-carotene hydroxy 97.5 0.00039 8.5E-09 69.7 9.1 131 113-261 126-272 (303)
12 COG5322 Predicted dehydrogenas 95.5 0.034 7.4E-07 56.6 6.8 100 376-477 87-196 (351)
13 PRK06196 oxidoreductase; Provi 93.5 0.13 2.8E-06 52.2 5.6 41 437-477 15-55 (315)
14 KOG1208 Dehydrogenases with di 92.8 0.1 2.2E-06 54.1 3.9 43 435-477 22-64 (314)
15 KOG1014 17 beta-hydroxysteroid 92.7 0.1 2.2E-06 54.0 3.5 29 449-477 50-78 (312)
16 PLN03209 translocon at the inn 92.3 0.2 4.3E-06 56.0 5.4 46 432-477 59-109 (576)
17 PF10520 Kua-UEV1_localn: Kua- 91.7 0.21 4.5E-06 47.9 4.1 56 212-270 100-156 (178)
18 PLN02780 ketoreductase/ oxidor 91.2 0.25 5.5E-06 50.7 4.5 29 449-477 54-82 (320)
19 PRK05866 short chain dehydroge 90.2 0.37 8E-06 48.6 4.6 29 449-477 41-69 (293)
20 PLN02695 GDP-D-mannose-3',5'-e 89.3 0.45 9.8E-06 49.7 4.6 35 443-477 16-50 (370)
21 PRK07985 oxidoreductase; Provi 88.8 0.44 9.6E-06 48.0 3.9 29 449-477 50-78 (294)
22 PRK07424 bifunctional sterol d 88.7 0.49 1.1E-05 50.8 4.3 30 448-477 178-207 (406)
23 PLN02657 3,8-divinyl protochlo 87.6 0.68 1.5E-05 49.0 4.6 37 441-477 53-89 (390)
24 PRK06128 oxidoreductase; Provi 87.0 0.66 1.4E-05 46.6 3.9 29 449-477 56-84 (300)
25 PLN02686 cinnamoyl-CoA reducta 85.9 0.92 2E-05 47.4 4.4 32 446-477 51-82 (367)
26 cd01078 NAD_bind_H4MPT_DH NADP 85.8 1.4 2.9E-05 41.8 5.2 31 447-477 27-57 (194)
27 PRK09496 trkA potassium transp 85.6 1.5 3.2E-05 46.6 5.9 98 373-483 158-268 (453)
28 PLN02166 dTDP-glucose 4,6-dehy 85.6 0.96 2.1E-05 48.8 4.5 36 442-477 110-149 (436)
29 COG1484 DnaC DNA replication p 85.5 1.2 2.5E-05 44.8 4.8 72 411-483 64-146 (254)
30 PRK05579 bifunctional phosphop 85.1 0.92 2E-05 48.6 4.0 94 361-477 118-233 (399)
31 PRK06484 short chain dehydroge 83.1 1.5 3.2E-05 47.5 4.6 31 447-477 268-298 (520)
32 PRK12548 shikimate 5-dehydroge 82.0 1.6 3.4E-05 44.5 4.1 30 447-477 125-155 (289)
33 PRK00258 aroE shikimate 5-dehy 81.8 2 4.2E-05 43.4 4.7 46 431-477 105-152 (278)
34 PLN02572 UDP-sulfoquinovose sy 81.7 1.5 3.3E-05 47.3 4.0 29 449-477 48-76 (442)
35 PRK07201 short chain dehydroge 81.6 1.7 3.7E-05 48.3 4.6 29 449-477 372-400 (657)
36 PLN02206 UDP-glucuronate decar 80.6 1.8 3.9E-05 46.8 4.1 29 449-477 120-148 (442)
37 PF01488 Shikimate_DH: Shikima 80.4 2.2 4.8E-05 38.4 4.1 30 447-477 11-41 (135)
38 PRK06701 short chain dehydroge 79.9 2 4.4E-05 43.1 4.0 29 449-477 47-75 (290)
39 PLN00016 RNA-binding protein; 78.2 2 4.4E-05 44.8 3.5 32 446-477 50-85 (378)
40 PRK13656 trans-2-enoyl-CoA red 78.1 2.7 5.8E-05 45.2 4.4 40 437-477 21-71 (398)
41 KOG1201 Hydroxysteroid 17-beta 77.9 2.6 5.6E-05 43.6 4.1 28 450-477 40-67 (300)
42 TIGR00507 aroE shikimate 5-deh 77.7 3.3 7.2E-05 41.5 4.8 46 431-477 100-145 (270)
43 TIGR02632 RhaD_aldol-ADH rhamn 77.1 2.9 6.2E-05 47.7 4.6 104 355-477 334-443 (676)
44 KOG1203 Predicted dehydrogenas 75.7 2.6 5.7E-05 45.4 3.6 52 426-477 56-108 (411)
45 cd03514 CrtR_beta-carotene-hyd 73.1 38 0.00082 32.9 10.6 17 150-166 73-89 (207)
46 PRK07340 ornithine cyclodeamin 72.4 16 0.00034 37.7 8.1 83 394-477 61-155 (304)
47 PRK08261 fabG 3-ketoacyl-(acyl 71.2 5.1 0.00011 42.7 4.5 30 448-477 210-239 (450)
48 cd01065 NAD_bind_Shikimate_DH 70.7 9.1 0.0002 34.3 5.4 45 432-477 3-48 (155)
49 PRK05855 short chain dehydroge 70.6 6.1 0.00013 42.7 5.0 30 448-477 315-344 (582)
50 PRK08324 short chain dehydroge 70.1 5.4 0.00012 45.4 4.6 29 449-477 423-451 (681)
51 TIGR02853 spore_dpaA dipicolin 70.0 14 0.00031 37.7 7.2 74 381-477 101-179 (287)
52 PRK06141 ornithine cyclodeamin 69.5 19 0.00042 37.1 8.1 84 393-477 60-155 (314)
53 PRK08727 hypothetical protein; 68.1 8 0.00017 38.0 4.8 33 449-481 42-79 (233)
54 PF00857 Isochorismatase: Isoc 67.5 27 0.00059 31.8 8.0 99 375-477 19-142 (174)
55 cd00431 cysteine_hydrolases Cy 67.4 50 0.0011 29.7 9.6 97 379-477 23-140 (161)
56 PF01695 IstB_IS21: IstB-like 66.9 6.5 0.00014 37.2 3.7 30 448-477 47-80 (178)
57 TIGR00521 coaBC_dfp phosphopan 66.4 6.3 0.00014 42.2 3.9 98 360-477 113-230 (390)
58 PRK11199 tyrA bifunctional cho 66.0 7 0.00015 41.4 4.2 37 441-477 91-127 (374)
59 PLN02260 probable rhamnose bio 65.4 6.2 0.00013 44.6 3.8 30 448-477 380-409 (668)
60 PRK05642 DNA replication initi 64.8 9.6 0.00021 37.5 4.6 35 449-483 46-85 (234)
61 cd01080 NAD_bind_m-THF_DH_Cycl 64.2 14 0.0003 35.0 5.4 43 435-477 29-73 (168)
62 PRK08125 bifunctional UDP-gluc 64.1 6.5 0.00014 44.5 3.7 31 447-477 314-345 (660)
63 cd05188 MDR Medium chain reduc 63.3 29 0.00064 32.9 7.6 59 418-477 92-163 (271)
64 PRK12377 putative replication 62.0 10 0.00023 38.0 4.3 38 440-477 93-134 (248)
65 PF03853 YjeF_N: YjeF-related 60.9 15 0.00033 34.4 5.0 41 437-477 13-57 (169)
66 cd08241 QOR1 Quinone oxidoredu 60.9 25 0.00055 34.2 6.8 76 394-477 80-169 (323)
67 PRK08181 transposase; Validate 59.5 6.5 0.00014 40.0 2.4 47 431-477 89-139 (269)
68 PRK07952 DNA replication prote 59.2 17 0.00038 36.4 5.3 37 441-477 92-132 (244)
69 PRK08939 primosomal protein Dn 58.8 15 0.00032 38.0 4.9 31 447-477 155-189 (306)
70 cd03510 Rhizobitoxine-FADS-lik 58.6 49 0.0011 31.2 8.1 16 150-165 71-86 (175)
71 cd05286 QOR2 Quinone oxidoredu 58.0 34 0.00073 33.2 7.1 76 394-477 77-166 (320)
72 cd03508 Delta4-sphingolipid-FA 57.5 1.3E+02 0.0028 31.0 11.4 20 233-252 221-240 (289)
73 PLN02520 bifunctional 3-dehydr 57.3 13 0.00028 41.3 4.5 29 448-477 379-407 (529)
74 KOG1600 Fatty acid desaturase 56.6 12 0.00026 39.1 3.7 22 85-106 34-55 (321)
75 TIGR01809 Shik-DH-AROM shikima 56.4 17 0.00038 36.8 4.9 47 430-477 105-154 (282)
76 PRK00676 hemA glutamyl-tRNA re 56.2 16 0.00034 38.6 4.6 86 379-477 108-203 (338)
77 PF01661 Macro: Macro domain; 55.6 42 0.00091 28.4 6.5 63 345-408 43-105 (118)
78 PRK12749 quinate/shikimate deh 55.5 15 0.00033 37.6 4.3 46 431-477 107-153 (288)
79 PRK12549 shikimate 5-dehydroge 55.5 17 0.00037 37.0 4.7 30 447-477 126-156 (284)
80 PRK14192 bifunctional 5,10-met 54.5 22 0.00048 36.5 5.2 35 443-477 154-188 (283)
81 cd05195 enoyl_red enoyl reduct 54.3 46 0.001 31.5 7.2 29 449-477 110-138 (293)
82 cd05288 PGDH Prostaglandin deh 54.2 44 0.00095 33.2 7.3 29 449-477 147-175 (329)
83 PRK11440 putative hydrolase; P 54.0 1E+02 0.0022 28.9 9.4 32 446-477 119-151 (188)
84 PRK06835 DNA replication prote 53.4 17 0.00036 38.2 4.2 32 446-477 181-216 (329)
85 cd05191 NAD_bind_amino_acid_DH 52.7 36 0.00078 28.0 5.4 31 446-477 21-52 (86)
86 cd03505 Delta9-FADS-like The D 52.0 63 0.0014 31.1 7.6 98 150-258 55-153 (178)
87 cd08253 zeta_crystallin Zeta-c 51.5 61 0.0013 31.5 7.7 59 418-477 102-174 (325)
88 KOG1610 Corticosteroid 11-beta 51.2 18 0.00039 37.9 4.0 33 445-477 26-58 (322)
89 cd05276 p53_inducible_oxidored 49.9 46 0.00099 32.3 6.5 30 448-477 140-169 (323)
90 PF11017 DUF2855: Protein of u 49.5 18 0.00039 37.8 3.7 32 446-477 134-167 (314)
91 PRK08291 ectoine utilization p 49.3 64 0.0014 33.4 7.8 83 393-477 66-162 (330)
92 cd01075 NAD_bind_Leu_Phe_Val_D 48.4 25 0.00053 34.0 4.3 29 448-477 28-56 (200)
93 PTZ00381 aldehyde dehydrogenas 47.9 34 0.00074 37.7 5.8 48 426-477 167-214 (493)
94 cd08289 MDR_yhfp_like Yhfp put 47.9 31 0.00066 34.3 5.0 37 447-483 146-185 (326)
95 PLN02174 aldehyde dehydrogenas 47.1 38 0.00082 37.4 6.0 48 426-477 170-217 (484)
96 PRK06526 transposase; Provisio 47.1 16 0.00036 36.7 2.9 30 448-477 98-131 (254)
97 PRK00779 ornithine carbamoyltr 46.5 71 0.0015 33.1 7.5 93 391-483 64-188 (304)
98 PRK08116 hypothetical protein; 46.4 25 0.00053 35.6 4.1 28 450-477 116-147 (268)
99 cd05284 arabinose_DH_like D-ar 45.9 31 0.00067 34.7 4.8 35 448-483 168-206 (340)
100 cd07099 ALDH_DDALDH Methylomon 45.2 38 0.00083 36.4 5.6 47 427-477 179-225 (453)
101 COG1086 Predicted nucleoside-d 45.1 22 0.00049 40.0 3.8 36 448-483 250-287 (588)
102 PLN00203 glutamyl-tRNA reducta 44.9 44 0.00096 37.3 6.1 29 448-477 266-295 (519)
103 cd03506 Delta6-FADS-like The D 43.9 1E+02 0.0022 29.5 7.8 18 146-164 46-63 (204)
104 PRK06893 DNA replication initi 43.8 31 0.00068 33.7 4.3 29 449-477 40-72 (229)
105 cd08259 Zn_ADH5 Alcohol dehydr 43.8 42 0.00091 33.2 5.3 29 449-477 164-192 (332)
106 PRK12475 thiamine/molybdopteri 43.4 25 0.00055 36.8 3.8 34 449-483 25-60 (338)
107 smart00829 PKS_ER Enoylreducta 43.3 82 0.0018 29.9 7.1 34 443-477 101-134 (288)
108 TIGR01757 Malate-DH_plant mala 43.1 37 0.0008 36.5 5.0 17 394-410 20-36 (387)
109 PRK08903 DnaA regulatory inact 42.9 32 0.00069 33.1 4.1 42 436-477 27-75 (227)
110 cd08270 MDR4 Medium chain dehy 42.3 70 0.0015 31.3 6.6 30 448-477 133-162 (305)
111 TIGR02992 ectoine_eutC ectoine 42.2 94 0.002 32.2 7.7 84 393-477 63-159 (326)
112 PLN02434 fatty acid hydroxylas 42.1 42 0.00091 33.8 4.9 42 122-163 165-208 (237)
113 TIGR01647 ATPase-IIIA_H plasma 42.1 98 0.0021 36.0 8.6 96 380-477 400-539 (755)
114 PRK08084 DNA replication initi 42.1 46 0.001 32.7 5.2 51 427-477 23-78 (235)
115 PRK14086 dnaA chromosomal repl 41.8 46 0.00099 38.0 5.7 42 441-482 307-355 (617)
116 PRK09310 aroDE bifunctional 3- 41.1 38 0.00082 37.2 4.8 46 431-477 315-360 (477)
117 PRK06921 hypothetical protein; 41.1 35 0.00076 34.5 4.3 31 447-477 116-151 (266)
118 PRK14175 bifunctional 5,10-met 41.0 38 0.00082 35.0 4.5 44 434-477 139-187 (286)
119 PRK08535 translation initiatio 40.9 35 0.00075 35.4 4.3 88 383-477 131-227 (310)
120 COG0169 AroE Shikimate 5-dehyd 40.8 41 0.00089 34.6 4.7 54 430-484 106-165 (283)
121 PLN02203 aldehyde dehydrogenas 40.7 52 0.0011 36.2 5.8 48 426-477 166-213 (484)
122 PRK08618 ornithine cyclodeamin 40.7 1.2E+02 0.0025 31.5 8.1 84 393-477 62-156 (325)
123 PTZ00354 alcohol dehydrogenase 40.2 93 0.002 30.8 7.1 29 449-477 142-170 (334)
124 PF13580 SIS_2: SIS domain; PD 40.0 24 0.00052 31.8 2.6 25 378-402 112-136 (138)
125 COG1832 Predicted CoA-binding 40.0 22 0.00048 33.0 2.4 39 441-479 9-51 (140)
126 PRK14188 bifunctional 5,10-met 39.5 49 0.0011 34.3 5.1 44 434-477 139-187 (296)
127 PRK12390 1-aminocyclopropane-1 39.3 36 0.00078 35.3 4.1 39 439-477 58-97 (337)
128 cd08268 MDR2 Medium chain dehy 38.9 77 0.0017 30.9 6.2 34 443-477 141-174 (328)
129 TIGR00658 orni_carb_tr ornithi 38.8 1.2E+02 0.0025 31.5 7.7 92 392-483 61-184 (304)
130 PRK07877 hypothetical protein; 38.7 23 0.0005 41.0 2.8 37 448-486 107-146 (722)
131 PRK09183 transposase/IS protei 38.7 36 0.00079 34.1 3.9 29 449-477 103-135 (259)
132 PRK06046 alanine dehydrogenase 38.7 1.5E+02 0.0033 30.7 8.6 84 393-477 64-158 (326)
133 KOG3011 Ubiquitin-conjugating 38.6 42 0.00091 34.2 4.2 138 117-266 105-259 (293)
134 cd05280 MDR_yhdh_yhfp Yhdh and 38.3 58 0.0012 32.2 5.3 30 448-477 147-176 (325)
135 cd05282 ETR_like 2-enoyl thioe 37.9 1E+02 0.0022 30.4 7.0 30 448-477 139-168 (323)
136 cd07108 ALDH_MGR_2402 Magnetos 37.9 75 0.0016 34.3 6.5 53 423-477 172-224 (457)
137 PF08032 SpoU_sub_bind: RNA 2' 37.8 42 0.0009 26.5 3.4 53 431-485 3-57 (76)
138 PRK08306 dipicolinate synthase 37.6 54 0.0012 33.6 5.0 29 448-477 152-180 (296)
139 PRK12422 chromosomal replicati 37.5 41 0.00089 36.7 4.4 34 449-482 142-180 (445)
140 PLN02527 aspartate carbamoyltr 37.2 1.1E+02 0.0025 31.6 7.4 92 392-483 61-190 (306)
141 PF02423 OCD_Mu_crystall: Orni 37.0 75 0.0016 32.8 6.0 84 393-477 63-157 (313)
142 cd07145 ALDH_LactADH_F420-Bios 37.0 64 0.0014 34.8 5.8 53 423-477 179-231 (456)
143 PRK07688 thiamine/molybdopteri 36.8 34 0.00074 35.9 3.5 34 449-483 25-60 (339)
144 PRK13982 bifunctional SbtC-lik 36.7 29 0.00064 38.3 3.1 22 456-477 280-301 (475)
145 TIGR00762 DegV EDD domain prot 36.6 26 0.00057 35.3 2.6 56 383-438 65-120 (275)
146 cd08267 MDR1 Medium chain dehy 36.5 1.4E+02 0.003 29.2 7.6 80 394-477 81-173 (319)
147 PHA02588 cd deoxycytidylate de 36.3 1.4E+02 0.0031 28.2 7.3 73 387-484 87-160 (168)
148 PF12990 DUF3874: Domain of un 36.3 17 0.00037 30.1 0.9 36 431-467 22-58 (73)
149 PRK03692 putative UDP-N-acetyl 35.9 69 0.0015 32.2 5.4 53 424-477 82-135 (243)
150 PRK14027 quinate/shikimate deh 35.6 75 0.0016 32.5 5.7 29 448-477 127-156 (283)
151 PRK13508 tagatose-6-phosphate 35.2 81 0.0017 31.7 5.8 85 385-483 203-298 (309)
152 TIGR00197 yjeF_nterm yjeF N-te 35.1 67 0.0015 31.1 5.0 39 439-477 37-77 (205)
153 PF00670 AdoHcyase_NAD: S-aden 35.0 25 0.00055 33.4 2.0 28 449-477 24-51 (162)
154 cd08294 leukotriene_B4_DH_like 34.9 69 0.0015 31.8 5.3 30 448-477 144-173 (329)
155 TIGR00263 trpB tryptophan synt 34.9 42 0.00092 35.7 3.9 39 439-477 89-127 (385)
156 PRK11241 gabD succinate-semial 34.8 80 0.0017 34.7 6.1 52 423-477 202-254 (482)
157 cd01076 NAD_bind_1_Glu_DH NAD( 34.7 45 0.00098 33.0 3.8 28 448-476 31-58 (227)
158 PRK13940 glutamyl-tRNA reducta 34.6 44 0.00095 36.1 4.0 29 448-477 181-210 (414)
159 cd01015 CSHase N-carbamoylsarc 34.6 3.1E+02 0.0067 25.5 9.3 32 446-477 112-144 (179)
160 cd08245 CAD Cinnamyl alcohol d 34.5 66 0.0014 32.2 5.0 28 449-477 164-191 (330)
161 cd07132 ALDH_F3AB Aldehyde deh 34.5 76 0.0016 34.3 5.8 47 427-477 159-205 (443)
162 cd08292 ETR_like_2 2-enoyl thi 34.4 1E+02 0.0022 30.6 6.3 30 448-477 140-169 (324)
163 PRK14194 bifunctional 5,10-met 34.2 64 0.0014 33.6 5.0 44 434-477 140-188 (301)
164 cd08269 Zn_ADH9 Alcohol dehydr 34.1 1.4E+02 0.003 29.3 7.2 29 448-477 130-159 (312)
165 PF02882 THF_DHG_CYH_C: Tetrah 34.1 55 0.0012 30.9 4.1 43 435-477 18-65 (160)
166 cd01012 YcaC_related YcaC rela 34.0 1.8E+02 0.0039 26.5 7.5 89 380-477 20-118 (157)
167 cd08295 double_bond_reductase_ 33.9 75 0.0016 32.2 5.4 30 448-477 152-181 (338)
168 TIGR00260 thrC threonine synth 33.7 33 0.00071 35.2 2.7 29 449-477 71-99 (328)
169 PF10727 Rossmann-like: Rossma 33.6 24 0.00053 31.9 1.6 27 450-477 12-38 (127)
170 cd07559 ALDH_ACDHII_AcoD-like 33.6 85 0.0018 34.3 6.0 53 423-477 191-243 (480)
171 PRK06823 ornithine cyclodeamin 33.5 1.9E+02 0.0042 30.0 8.4 84 393-477 62-158 (315)
172 cd01714 ETF_beta The electron 33.5 46 0.001 32.1 3.6 92 382-477 38-140 (202)
173 cd05212 NAD_bind_m-THF_DH_Cycl 32.7 98 0.0021 28.5 5.4 35 443-477 23-57 (140)
174 TIGR02823 oxido_YhdH putative 32.6 83 0.0018 31.3 5.4 34 444-477 142-175 (323)
175 cd05211 NAD_bind_Glu_Leu_Phe_V 32.6 55 0.0012 32.2 4.0 30 447-477 22-51 (217)
176 PRK00045 hemA glutamyl-tRNA re 32.4 66 0.0014 34.6 4.9 30 447-477 181-211 (423)
177 PLN02766 coniferyl-aldehyde de 32.3 1E+02 0.0022 34.0 6.4 53 423-477 214-267 (501)
178 PRK05476 S-adenosyl-L-homocyst 32.1 1.3E+02 0.0027 32.9 6.9 71 387-477 164-240 (425)
179 PF10991 DUF2815: Protein of u 32.1 81 0.0018 30.5 4.9 71 365-435 27-112 (181)
180 KOG4701 Chitinase [Cell wall/m 31.9 43 0.00093 36.1 3.2 72 383-457 90-190 (568)
181 cd05014 SIS_Kpsf KpsF-like pro 31.7 50 0.0011 28.5 3.3 42 374-416 52-93 (128)
182 cd05561 Peptidases_S8_4 Peptid 31.6 81 0.0018 31.0 5.0 59 382-440 106-198 (239)
183 cd06215 FNR_iron_sulfur_bindin 31.5 64 0.0014 30.8 4.2 53 420-474 157-222 (231)
184 cd08250 Mgc45594_like Mgc45594 31.1 1.3E+02 0.0029 29.8 6.6 30 448-477 140-169 (329)
185 PRK11891 aspartate carbamoyltr 31.1 1.8E+02 0.0039 31.9 7.9 92 392-483 148-280 (429)
186 cd07119 ALDH_BADH-GbsA Bacillu 30.9 1.1E+02 0.0023 33.4 6.3 53 423-477 190-242 (482)
187 TIGR02824 quinone_pig3 putativ 30.9 1.6E+02 0.0034 28.7 7.0 33 444-477 137-169 (325)
188 PRK03910 D-cysteine desulfhydr 30.9 39 0.00086 34.9 2.8 35 443-477 59-94 (331)
189 PRK09929 hypothetical protein; 30.7 55 0.0012 28.3 3.2 37 385-421 54-91 (91)
190 cd05289 MDR_like_2 alcohol deh 30.5 1.1E+02 0.0024 29.5 5.8 30 448-477 145-174 (309)
191 cd03522 MoeA_like MoeA_like. T 30.5 58 0.0013 34.0 4.0 66 395-477 125-197 (312)
192 PRK14191 bifunctional 5,10-met 30.5 73 0.0016 33.0 4.6 43 435-477 139-186 (285)
193 cd07142 ALDH_F2BC Arabidosis a 30.4 1.2E+02 0.0025 33.2 6.4 53 423-477 197-250 (476)
194 PF07894 DUF1669: Protein of u 30.3 43 0.00093 34.6 2.9 55 375-437 133-218 (284)
195 PRK00124 hypothetical protein; 30.3 3.2E+02 0.0068 25.8 8.4 83 385-482 13-97 (151)
196 PF01008 IF-2B: Initiation fac 30.1 28 0.0006 35.0 1.5 86 385-477 120-215 (282)
197 cd07134 ALDH_AlkH-like Pseudom 29.9 1E+02 0.0022 33.2 5.8 47 427-477 159-205 (433)
198 cd07102 ALDH_EDX86601 Uncharac 29.9 1.1E+02 0.0023 32.9 6.0 52 423-477 172-223 (452)
199 cd08273 MDR8 Medium chain dehy 29.8 1.7E+02 0.0037 29.0 7.1 30 448-477 140-169 (331)
200 PLN03050 pyridoxine (pyridoxam 29.6 85 0.0018 31.6 4.8 29 449-477 62-92 (246)
201 cd07136 ALDH_YwdH-P39616 Bacil 29.6 97 0.0021 33.7 5.6 51 423-477 155-205 (449)
202 PRK12550 shikimate 5-dehydroge 29.3 73 0.0016 32.4 4.4 46 430-477 105-151 (272)
203 cd08288 MDR_yhdh Yhdh putative 29.2 2.2E+02 0.0047 28.2 7.7 31 447-477 146-176 (324)
204 TIGR02825 B4_12hDH leukotriene 29.2 93 0.002 31.2 5.1 29 449-477 140-168 (325)
205 PRK12404 stage V sporulation p 28.9 38 0.00082 35.8 2.2 26 450-475 227-253 (334)
206 cd01715 ETF_alpha The electron 28.9 81 0.0018 29.2 4.3 96 377-477 9-112 (168)
207 TIGR02198 rfaE_dom_I rfaE bifu 28.7 99 0.0021 31.0 5.2 75 379-471 209-299 (315)
208 TIGR02278 PaaN-DH phenylacetic 28.6 1.1E+02 0.0025 35.0 6.2 50 423-477 201-252 (663)
209 cd07116 ALDH_ACDHII-AcoD Ralst 28.4 1.3E+02 0.0029 32.7 6.4 53 423-477 191-243 (479)
210 PLN03154 putative allyl alcoho 28.2 1E+02 0.0022 31.8 5.3 36 448-483 159-197 (348)
211 cd07110 ALDH_F10_BADH Arabidop 28.0 1.4E+02 0.0029 32.3 6.4 53 423-477 176-228 (456)
212 cd07087 ALDH_F3-13-14_CALDH-li 27.9 1.2E+02 0.0025 32.6 5.9 46 428-477 160-205 (426)
213 cd07104 ALDH_BenzADH-like ALDH 27.7 1.3E+02 0.0027 32.1 6.0 53 423-477 155-207 (431)
214 TIGR02068 cya_phycin_syn cyano 27.6 2.5E+02 0.0055 33.3 9.0 95 383-477 402-510 (864)
215 PRK14179 bifunctional 5,10-met 27.6 84 0.0018 32.5 4.5 44 434-477 139-187 (284)
216 cd07093 ALDH_F8_HMSADH Human a 27.6 1.3E+02 0.0027 32.4 6.1 53 423-477 173-225 (455)
217 TIGR01275 ACC_deam_rel pyridox 27.5 69 0.0015 32.6 3.9 39 439-477 47-86 (311)
218 PRK14183 bifunctional 5,10-met 27.5 97 0.0021 32.0 4.9 44 434-477 138-186 (281)
219 cd07117 ALDH_StaphAldA1 Unchar 27.5 1.3E+02 0.0028 32.9 6.2 49 426-477 194-243 (475)
220 COG0010 SpeB Arginase/agmatina 27.3 1.7E+02 0.0037 30.1 6.7 101 376-477 82-198 (305)
221 TIGR00362 DnaA chromosomal rep 27.3 67 0.0014 34.1 3.8 34 449-482 137-177 (405)
222 PRK08335 translation initiatio 27.2 91 0.002 32.0 4.6 88 383-477 120-216 (275)
223 TIGR02845 spore_V_AD stage V s 27.1 43 0.00093 35.3 2.3 26 450-475 223-249 (327)
224 PRK04284 ornithine carbamoyltr 27.0 2.2E+02 0.0048 29.9 7.6 91 392-482 67-191 (332)
225 COG1335 PncA Amidases related 26.9 5E+02 0.011 24.3 9.4 37 439-477 126-163 (205)
226 PRK03562 glutathione-regulated 26.8 64 0.0014 36.6 3.8 41 443-484 395-438 (621)
227 cd04241 AAK_FomA-like AAK_FomA 26.8 1.4E+02 0.0031 29.3 5.9 24 452-477 206-230 (252)
228 PF07451 SpoVAD: Stage V sporu 26.7 49 0.0011 34.8 2.6 27 449-475 223-250 (329)
229 TIGR01804 BADH glycine betaine 26.7 1.4E+02 0.003 32.4 6.2 53 423-477 189-241 (467)
230 TIGR02530 flg_new flagellar op 26.7 49 0.0011 28.9 2.2 23 383-406 38-60 (96)
231 PRK10669 putative cation:proto 26.6 58 0.0013 36.2 3.4 39 444-483 412-454 (558)
232 cd04795 SIS SIS domain. SIS (S 26.5 65 0.0014 25.6 2.8 22 382-403 60-81 (87)
233 COG3623 SgaU Putative L-xylulo 26.5 77 0.0017 32.3 3.8 58 367-433 80-137 (287)
234 cd07114 ALDH_DhaS Uncharacteri 26.5 1.4E+02 0.0031 32.1 6.3 53 423-477 175-227 (457)
235 PLN02503 fatty acyl-CoA reduct 26.4 46 0.001 37.8 2.6 26 447-472 118-143 (605)
236 cd06446 Trp-synth_B Tryptophan 26.4 66 0.0014 33.9 3.6 58 406-477 54-111 (365)
237 TIGR01035 hemA glutamyl-tRNA r 26.2 80 0.0017 34.0 4.2 30 447-477 179-209 (417)
238 cd06184 flavohem_like_fad_nad_ 26.1 1E+02 0.0022 29.9 4.7 48 435-483 196-244 (247)
239 PLN02467 betaine aldehyde dehy 26.0 1.5E+02 0.0032 32.8 6.3 53 423-477 207-259 (503)
240 cd00763 Bacterial_PFK Phosphof 26.0 2.3E+02 0.005 29.6 7.4 92 378-477 12-120 (317)
241 PRK08304 stage V sporulation p 25.9 46 0.001 35.2 2.3 26 450-475 229-255 (337)
242 TIGR03420 DnaA_homol_Hda DnaA 25.9 1.2E+02 0.0026 28.7 5.0 47 431-477 20-71 (226)
243 cd07100 ALDH_SSADH1_GabD1 Myco 25.8 1.3E+02 0.0028 32.2 5.8 31 446-477 173-203 (429)
244 cd07124 ALDH_PutA-P5CDH-RocA D 25.8 1.4E+02 0.003 32.9 6.1 53 423-477 222-280 (512)
245 TIGR00524 eIF-2B_rel eIF-2B al 25.7 89 0.0019 32.4 4.3 87 385-477 139-236 (303)
246 PRK10294 6-phosphofructokinase 25.5 93 0.002 31.3 4.4 81 384-475 204-294 (309)
247 TIGR03216 OH_muco_semi_DH 2-hy 25.3 1.6E+02 0.0034 32.2 6.4 30 447-477 219-248 (481)
248 PRK14088 dnaA chromosomal repl 25.3 97 0.0021 33.7 4.7 38 445-482 127-171 (440)
249 COG0373 HemA Glutamyl-tRNA red 25.2 82 0.0018 34.3 4.1 30 447-477 177-206 (414)
250 PF03808 Glyco_tran_WecB: Glyc 25.1 68 0.0015 30.1 3.1 53 424-477 24-79 (172)
251 cd08231 MDR_TM0436_like Hypoth 25.0 3.2E+02 0.007 27.8 8.3 30 447-477 177-207 (361)
252 PLN02419 methylmalonate-semial 25.0 1.5E+02 0.0032 33.9 6.1 52 423-477 305-356 (604)
253 PRK15062 hydrogenase isoenzyme 25.0 26 0.00057 37.3 0.3 103 361-468 37-151 (364)
254 PRK00856 pyrB aspartate carbam 24.8 2.7E+02 0.0059 28.9 7.7 96 385-483 63-194 (305)
255 cd07101 ALDH_SSADH2_GabD2 Myco 24.8 1.4E+02 0.0031 32.2 5.8 50 423-477 174-224 (454)
256 cd07131 ALDH_AldH-CAJ73105 Unc 24.8 1.6E+02 0.0035 32.0 6.3 50 426-477 194-243 (478)
257 TIGR00511 ribulose_e2b2 ribose 24.8 1E+02 0.0022 31.9 4.5 88 383-477 126-222 (301)
258 PF08285 DPM3: Dolichol-phosph 24.7 55 0.0012 28.2 2.2 25 375-399 67-91 (91)
259 PLN02884 6-phosphofructokinase 24.6 2E+02 0.0044 31.3 6.9 89 378-477 65-177 (411)
260 TIGR01238 D1pyr5carbox3 delta- 24.6 1.6E+02 0.0034 32.6 6.2 53 423-477 216-271 (500)
261 cd05213 NAD_bind_Glutamyl_tRNA 24.5 46 0.001 34.2 2.0 30 447-477 177-207 (311)
262 KOG1210 Predicted 3-ketosphing 24.5 66 0.0014 33.9 3.0 41 437-477 22-62 (331)
263 cd08243 quinone_oxidoreductase 24.4 1.5E+02 0.0032 29.0 5.5 29 449-477 144-172 (320)
264 PRK08192 aspartate carbamoyltr 24.4 2.6E+02 0.0057 29.5 7.5 92 392-483 66-198 (338)
265 PRK09850 pseudouridine kinase; 24.3 1.2E+02 0.0025 30.7 4.8 79 383-471 203-289 (313)
266 PF07492 Trehalase_Ca-bi: Neut 24.2 36 0.00078 23.6 0.7 11 393-403 19-29 (30)
267 PF13241 NAD_binding_7: Putati 24.2 87 0.0019 26.7 3.3 33 447-480 6-39 (103)
268 cd07112 ALDH_GABALDH-PuuC Esch 24.0 1.6E+02 0.0035 31.9 6.1 53 423-477 180-233 (462)
269 TIGR01497 kdpB K+-transporting 24.0 2.9E+02 0.0064 32.0 8.4 86 382-477 411-513 (675)
270 PF14488 DUF4434: Domain of un 24.0 68 0.0015 30.2 2.8 25 379-403 61-86 (166)
271 TIGR01524 ATPase-IIIB_Mg magne 24.0 4.5E+02 0.0097 31.2 10.1 93 383-477 465-607 (867)
272 KOG2774 NAD dependent epimeras 24.0 65 0.0014 32.9 2.8 38 440-477 34-74 (366)
273 cd08235 iditol_2_DH_like L-idi 23.8 1.8E+02 0.004 29.1 6.1 28 449-477 167-195 (343)
274 PRK10565 putative carbohydrate 23.7 1.1E+02 0.0024 33.9 4.9 39 439-477 52-92 (508)
275 PRK00149 dnaA chromosomal repl 23.6 1.4E+02 0.0029 32.4 5.4 34 449-482 149-189 (450)
276 PF00208 ELFV_dehydrog: Glutam 23.6 83 0.0018 31.5 3.5 29 448-477 32-60 (244)
277 PF07338 DUF1471: Protein of u 23.6 91 0.002 24.3 3.0 16 385-400 20-36 (56)
278 cd07151 ALDH_HBenzADH NADP+-de 23.6 1.5E+02 0.0034 32.0 5.9 49 426-477 190-239 (465)
279 PLN02621 nicotinamidase 23.6 6.3E+02 0.014 23.9 9.5 32 446-477 125-157 (197)
280 cd08274 MDR9 Medium chain dehy 23.5 2.3E+02 0.0051 28.4 6.9 30 448-477 178-207 (350)
281 cd01983 Fer4_NifH The Fer4_Nif 23.5 1.2E+02 0.0026 23.7 3.9 27 451-477 2-32 (99)
282 cd07086 ALDH_F7_AASADH-like NA 23.4 1.7E+02 0.0036 32.0 6.1 48 427-477 197-244 (478)
283 TIGR02152 D_ribokin_bact ribok 23.2 1E+02 0.0022 30.4 4.1 83 385-477 196-286 (293)
284 PRK13252 betaine aldehyde dehy 23.2 1.7E+02 0.0037 31.9 6.1 49 426-477 201-249 (488)
285 cd07097 ALDH_KGSADH-YcbD Bacil 23.1 1.8E+02 0.0039 31.6 6.2 49 426-477 194-243 (473)
286 cd06449 ACCD Aminocyclopropane 23.0 85 0.0019 32.0 3.6 33 445-477 49-82 (307)
287 PRK10754 quinone oxidoreductas 23.0 1.5E+02 0.0032 29.5 5.3 33 444-477 138-170 (327)
288 cd07137 ALDH_F3FHI Plant aldeh 22.9 1.7E+02 0.0037 31.5 6.0 48 426-477 159-206 (432)
289 PF03807 F420_oxidored: NADP o 22.9 87 0.0019 25.6 3.0 22 456-477 6-30 (96)
290 PRK06696 uridine kinase; Valid 22.9 1.4E+02 0.003 28.9 4.8 40 444-483 18-62 (223)
291 PLN03049 pyridoxine (pyridoxam 22.8 1.2E+02 0.0025 33.5 4.7 41 437-477 47-91 (462)
292 TIGR01230 agmatinase agmatinas 22.8 2.1E+02 0.0046 28.8 6.3 96 378-477 75-181 (275)
293 PRK11563 bifunctional aldehyde 22.8 1.5E+02 0.0034 33.9 5.9 46 427-477 209-256 (675)
294 TIGR01517 ATPase-IIB_Ca plasma 22.8 3.9E+02 0.0085 32.0 9.4 93 383-477 529-673 (941)
295 cd06209 BenDO_FAD_NAD Benzoate 22.8 1.3E+02 0.0029 28.7 4.7 30 444-474 189-218 (228)
296 PRK14171 bifunctional 5,10-met 22.7 98 0.0021 32.1 3.9 44 434-477 140-188 (288)
297 cd03400 Band_7_1 A subgroup of 22.7 65 0.0014 28.1 2.3 41 364-404 66-107 (124)
298 cd05311 NAD_bind_2_malic_enz N 22.6 1.4E+02 0.0029 29.5 4.8 30 447-477 24-56 (226)
299 cd08293 PTGR2 Prostaglandin re 22.6 1.6E+02 0.0035 29.6 5.5 34 444-477 150-185 (345)
300 PRK14189 bifunctional 5,10-met 22.5 1.4E+02 0.0029 31.0 4.9 44 434-477 139-187 (285)
301 PRK13912 nuclease NucT; Provis 22.5 92 0.002 29.3 3.4 50 383-434 59-110 (177)
302 cd07105 ALDH_SaliADH Salicylal 22.3 1.6E+02 0.0036 31.4 5.7 54 423-477 154-209 (432)
303 cd07135 ALDH_F14-YMR110C Sacch 22.2 1.8E+02 0.0038 31.5 5.9 47 426-477 166-213 (436)
304 cd08249 enoyl_reductase_like e 22.2 2.8E+02 0.0061 28.0 7.2 31 447-477 154-184 (339)
305 PF12242 Eno-Rase_NADH_b: NAD( 22.2 1.5E+02 0.0032 25.1 4.1 31 446-477 37-69 (78)
306 cd07138 ALDH_CddD_SSP0762 Rhod 22.2 2.1E+02 0.0044 31.1 6.5 30 447-477 209-238 (466)
307 PRK03659 glutathione-regulated 22.2 89 0.0019 35.3 3.8 36 447-483 399-437 (601)
308 cd07128 ALDH_MaoC-N N-terminal 22.1 1.8E+02 0.0039 32.4 6.1 47 426-477 204-252 (513)
309 cd07130 ALDH_F7_AASADH NAD+-de 22.0 1.8E+02 0.0039 31.7 6.0 28 447-475 214-241 (474)
310 PF14542 Acetyltransf_CG: GCN5 22.0 92 0.002 25.5 2.9 21 382-402 41-61 (78)
311 COG2130 Putative NADP-dependen 21.9 1.1E+02 0.0024 32.2 4.1 97 348-477 81-180 (340)
312 PRK06110 hypothetical protein; 21.8 79 0.0017 32.6 3.1 28 450-477 71-98 (322)
313 PLN02466 aldehyde dehydrogenas 21.8 1.8E+02 0.0039 32.5 6.1 53 423-477 251-304 (538)
314 cd07115 ALDH_HMSADH_HapE Pseud 21.8 1.9E+02 0.0041 31.2 6.1 50 426-477 176-225 (453)
315 PRK01713 ornithine carbamoyltr 21.8 3.6E+02 0.0077 28.4 7.9 92 392-483 68-193 (334)
316 PRK11916 electron transfer fla 21.5 1.1E+02 0.0025 31.9 4.1 85 385-475 17-106 (312)
317 PRK08644 thiamine biosynthesis 21.4 80 0.0017 30.8 2.8 35 448-483 28-64 (212)
318 cd05006 SIS_GmhA Phosphoheptos 21.4 83 0.0018 29.2 2.9 21 382-402 114-134 (177)
319 COG4693 PchG Oxidoreductase (N 21.3 49 0.0011 34.5 1.4 37 441-477 57-96 (361)
320 cd08242 MDR_like Medium chain 21.2 1.7E+02 0.0037 29.0 5.3 28 449-477 157-184 (319)
321 KOG1196 Predicted NAD-dependen 21.2 1.8E+02 0.0039 30.8 5.4 56 427-482 131-191 (343)
322 cd03512 Alkane-hydroxylase Alk 21.2 9.3E+02 0.02 25.0 15.5 48 210-257 219-278 (314)
323 cd05008 SIS_GlmS_GlmD_1 SIS (S 21.2 90 0.002 26.8 2.9 30 377-406 54-83 (126)
324 cd07103 ALDH_F5_SSADH_GabD Mit 21.0 2.1E+02 0.0044 30.7 6.1 53 423-477 173-225 (451)
325 cd07113 ALDH_PADH_NahF Escheri 20.9 1.9E+02 0.0042 31.4 6.0 52 423-477 198-249 (477)
326 KOG2865 NADH:ubiquinone oxidor 20.9 64 0.0014 33.9 2.1 30 454-483 67-98 (391)
327 cd07133 ALDH_CALDH_CalB Conife 20.9 2.1E+02 0.0046 30.8 6.2 48 426-477 159-206 (434)
328 COG0529 CysC Adenylylsulfate k 20.8 1.8E+02 0.0039 28.6 4.9 33 445-477 20-56 (197)
329 COG1398 OLE1 Fatty-acid desatu 20.8 1.8E+02 0.0039 30.2 5.2 20 233-252 227-246 (289)
330 TIGR02371 ala_DH_arch alanine 20.7 4.5E+02 0.0097 27.3 8.4 84 393-477 63-158 (325)
331 PRK12391 tryptophan synthase s 20.6 88 0.0019 34.0 3.2 57 407-477 99-155 (427)
332 PRK01122 potassium-transportin 20.6 4.5E+02 0.0097 30.5 9.0 87 381-477 409-512 (679)
333 TIGR00511 ribulose_e2b2 ribose 20.5 1.9E+02 0.0042 29.9 5.5 51 427-477 118-171 (301)
334 PRK06815 hypothetical protein; 20.5 2.3E+02 0.0049 29.1 6.1 29 449-477 68-96 (317)
335 cd07129 ALDH_KGSADH Alpha-Keto 20.4 1.8E+02 0.0038 31.6 5.5 52 423-477 167-221 (454)
336 KOG2949 Ketopantoate hydroxyme 20.4 1.4E+02 0.003 30.4 4.2 39 436-477 121-159 (306)
337 PRK05506 bifunctional sulfate 20.4 1.2E+02 0.0025 34.5 4.3 65 420-484 406-501 (632)
338 PRK08328 hypothetical protein; 20.3 88 0.0019 30.8 2.9 34 449-483 28-63 (231)
339 cd07091 ALDH_F1-2_Ald2-like AL 20.3 2.3E+02 0.0049 30.8 6.3 50 426-477 200-250 (476)
340 cd07088 ALDH_LactADH-AldA Esch 20.3 2.1E+02 0.0047 30.8 6.1 30 447-477 212-241 (468)
341 PLN02516 methylenetetrahydrofo 20.3 1.3E+02 0.0028 31.4 4.2 44 434-477 148-196 (299)
342 cd07144 ALDH_ALD2-YMR170C Sacc 20.2 2.3E+02 0.005 30.9 6.4 53 423-477 200-252 (484)
343 PF13380 CoA_binding_2: CoA bi 20.2 1.3E+02 0.0028 26.4 3.7 29 449-477 1-32 (116)
344 PHA03003 palmytilated EEV memb 20.2 1.7E+02 0.0036 31.0 5.2 23 378-400 58-80 (369)
345 PLN02477 glutamate dehydrogena 20.1 1.1E+02 0.0024 33.2 3.8 27 449-476 207-233 (410)
346 PRK10792 bifunctional 5,10-met 20.1 1.3E+02 0.0028 31.1 4.2 44 434-477 140-188 (285)
No 1
>PLN02869 fatty aldehyde decarbonylase
Probab=100.00 E-value=1.2e-160 Score=1278.03 Aligned_cols=480 Identities=38% Similarity=0.694 Sum_probs=460.1
Q ss_pred CCCCCCCCCccCCCceEEehhHHHHHHHHHhhhcccc-CcchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCCC
Q 011375 2 DAPLAAWPWDNLGMFKYVLYGPLVGKALYSWVYEDKR-IEYWCLHILIISVLRGLIHILWNSFSNMLFLNRARQINQRGV 80 (487)
Q Consensus 2 ~~~l~~wpw~~lg~~ky~l~~P~~~~~~~~~~~~~~~-~~~w~l~il~~~l~r~l~~~~wi~~~r~~~~~~k~KIq~~~~ 80 (487)
||+||+|||++||+|||++++|+|++++|++..++.. .|.||+++++++++|++++|+|++++|++.+++++||++|++
T Consensus 5 pg~lt~wpW~~lG~~Ky~~~~p~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~l~~q~W~s~sr~~~~~~~~ri~~~~i 84 (620)
T PLN02869 5 PGILTDWPWKPLGSFKYVVLAPWVIHSIYSFVVKDEKERDLSYFLIFPFLLWRMLHNQLWISLSRYRTAKGNNRIVDKGI 84 (620)
T ss_pred CcccccCcccccCCeeeeeehHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeeeccCC
Confidence 8999999999999999999999999999998877554 445999999999999999999999999999999999999999
Q ss_pred ChhhhhHHHhchhhHHHHHHHHHHHhhhccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcCCcchHhHHhhccCC
Q 011375 81 DFKQIDNEWNWDNFILLQAAIASMGYYIFPCSESLPRWNTKGFIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHH 160 (487)
Q Consensus 81 ~~~qi~rE~~~~n~ills~li~~~~~~~~p~~~~lP~W~~~gli~~~ll~~l~~Df~~Yw~HRllH~~~~ly~r~Hk~HH 160 (487)
+|||+|||++||||+|++++++++++..+|..+.+|.|+++|++..+++|+++.|++|||+||++|++ ++||++|++||
T Consensus 85 ~f~QvDre~~wDd~iil~~l~~~~~~~~~p~~~~~P~W~~~g~l~~~Llhv~~~Df~fYW~HRllH~~-~LYwr~HkvHH 163 (620)
T PLN02869 85 EFEQVDRERNWDDQILFNGILFYVGYMILPGASHMPLWRTDGVLITILLHMGPVEFLYYWLHRALHHH-YLYSRYHSHHH 163 (620)
T ss_pred CceeeccccccchHHHHHHHHHHHHHHhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHhhcc
Confidence 99999999999999999999999999889999999999999999999999999999999999999999 99999999999
Q ss_pred CCCCCCcccccccCh-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcccceeecCCCcccccccccccc
Q 011375 161 SSPVPQIPTAGHATL-LEHIVLSAIVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLL 239 (487)
Q Consensus 161 ss~~p~~~ta~~~hp-lE~ll~~~~~~iPll~~~llG~~s~~~i~~y~~~~~~~~~~~Hsn~e~~P~~~~~~~p~l~~li 239 (487)
++++|+|+|+.. || .|.+.+.+++.+|+++..++|..++.++++|+++.++.++++|||+|++|+++++.+|+++|++
T Consensus 164 ss~~~~P~Ts~~-HP~~E~L~y~ll~~IPLllli~~g~~hi~t~~~yli~~~f~~~~gHSN~El~P~~~~~~~ppLkyll 242 (620)
T PLN02869 164 SSIVTEPITSVI-HPFAEHIAYFLLFAIPLLTTIFTGTASIAAFFGYISYIDFMNNMGHCNFELIPKWLFSIFPPLKYLM 242 (620)
T ss_pred CCCCCCchhhhc-CcHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcccccCccccccchhccCCcchhee
Confidence 999999999974 65 5778777777889987767777788899999999999999999999999999988889999999
Q ss_pred CCchhhhhhhcCCCCCcccCchhHHhhcCCCCCCCcchhhhhhccCCCCcCCCCEEEeeeccccccccCcccchhhcccC
Q 011375 240 YTPTYHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENVRVPDFVFLAHVVDVTASMHPPFVFRSLASL 319 (487)
Q Consensus 240 ~tp~~H~lHH~~~~~NYG~~~~lWDrLfGT~~~~~~~~~~~~~~~~~~~~~~pd~VfLah~~~~~s~~h~~~~~~~~~~~ 319 (487)
+||++|++||+++++|||.+|++||++|||+++++++.+++... +.|+ +||+|||||+||++|+||+||||||+||+
T Consensus 243 ~TPsfHdlHHs~fd~NYGlfF~~WDrLFGT~d~~s~~l~e~~~~--~~~~-~pd~V~l~H~t~~~s~~h~~~~~~s~as~ 319 (620)
T PLN02869 243 YTPSYHSLHHTQFRTNYSLFMPIYDYIYGTMDKSSDTLYEKSLK--RPEE-IPDVVHLTHLTTPDSIYHLRLGFASLASK 319 (620)
T ss_pred cCchHHhHHhccCCcCcccchHHHHhccCCCCCCchhHHHHhhc--Cccc-CCCEEEEeccCCHHHhhccchHHHHhccC
Confidence 99999999999999999999999999999999999999999887 5444 99999999999999999999999999999
Q ss_pred CCCCccccccchhHHHHHHHHHHHhccceEEeeeecCCcceeeEEeeccCccccccchhhhhHHHHHHHHHHHhhcCCeE
Q 011375 320 PYSPKLFMLPFWPLAFSAMFALWAWSKTFLISFYWLRGRLHQTWAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKV 399 (487)
Q Consensus 320 p~~~~~~~~~~~p~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~w~~pr~~~~y~~~~~~~~in~~ie~ai~~a~~~g~kv 399 (487)
||+++||||||||+|+++|+++|+|||||++|+|+|||+++|||+||||||||++|+++|+||++|||||+||||+||||
T Consensus 320 p~~~~~~l~~~wp~~~~~m~~~w~~~~~f~~~~~~~~~~~~~tw~vpr~~~qy~~~~~~~~in~~Ie~ail~ad~~Gvkv 399 (620)
T PLN02869 320 PYISKWYLRLMWPVTSWSMMLTWIYGRTFVLERNRFNKLNLQTWVIPKYKIQYLLKWQNESINSLIEEAILEADKRGVKV 399 (620)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHhCCceEeeeeeccceeeeEEEeccccccccCchhhhhHHHHHHHHHHHHHhcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccccccCceeeeecCCCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe-c
Q 011375 400 LSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK-D 478 (487)
Q Consensus 400 ~sl~~ln~~~~ln~~g~l~~~~~p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~-~ 478 (487)
+|||+|||||+|||||||||+|||+|||||||||||||||||||||+|||||||||+|||||||||+|||||||||++ |
T Consensus 400 ~sLg~LNk~~~LN~~G~l~v~k~p~L~vrvv~G~tLtaAvvln~ip~~~~~vfl~G~~sK~~raia~~lc~r~i~~~t~~ 479 (620)
T PLN02869 400 LSLGLLNQGEELNRYGELYIHRNPKLKIKVVDGSSLAVAVVLNSIPKGTTQVLFRGNLSKVAYFIASALCQRGIQVATFR 479 (620)
T ss_pred EechhcchhhhhcCCceEeeecCCCcceEEEeCCchHHHHHHHhcCCCCceEEEecCccHHHHHHHHHHHhcCCeEeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999766 9
Q ss_pred hhhhhhcc
Q 011375 479 SRKFRKKH 486 (487)
Q Consensus 479 ~~~~~~~~ 486 (487)
+|||+|.+
T Consensus 480 ~~~~~~~~ 487 (620)
T PLN02869 480 EDEYEKLN 487 (620)
T ss_pred HHHHHHHH
Confidence 99999764
No 2
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=7.1e-35 Score=288.43 Aligned_cols=236 Identities=19% Similarity=0.292 Sum_probs=191.9
Q ss_pred HHHHHHhhhccccCcchhHHHHHHHHHHHHHH----HHHHHH--HhhhhhhhCCCCCCCC-CChhhhhHHHh--chhhHH
Q 011375 26 GKALYSWVYEDKRIEYWCLHILIISVLRGLIH----ILWNSF--SNMLFLNRARQINQRG-VDFKQIDNEWN--WDNFIL 96 (487)
Q Consensus 26 ~~~~~~~~~~~~~~~~w~l~il~~~l~r~l~~----~~wi~~--~r~~~~~~k~KIq~~~-~~~~qi~rE~~--~~n~il 96 (487)
.+.+|....+....|.|...+++..+...+++ ..|+++ .+..++.+|||||+++ ++++++..+++ ..||++
T Consensus 11 lq~~W~~l~~~f~~d~~l~~~~~~~~~~~~~y~l~~lpf~~iD~t~~~~~~~rYKIQp~k~~s~~~~~kc~k~vl~n~~~ 90 (283)
T KOG0873|consen 11 LQPLWDYLYNTFSGDFLLLCVGGPFIVHELVYWLFCLPFIFIDVTNRPPFLRRYKIQPKKNPSLSKQLKCLKVVLLNHFL 90 (283)
T ss_pred HHHHHHHHHhhCCCceEEEeechhHHHHHHHHHHhcchheEeecccCcchhhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34444444332223456555555455555444 334443 3468899999999875 47888888887 579999
Q ss_pred HHHHHHHHHhhhc-----cCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcCCcchHhHHhhccCCCCCCCCccccc
Q 011375 97 LQAAIASMGYYIF-----PCSESLPRWNTKGFIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAG 171 (487)
Q Consensus 97 ls~li~~~~~~~~-----p~~~~lP~W~~~gli~~~ll~~l~~Df~~Yw~HRllH~~~~ly~r~Hk~HHss~~p~~~ta~ 171 (487)
++.++..+.+... |....+|.|.+ ++.++++++++.|+.+||.||++|++ ++|+.+||+||++.+|.+.++.
T Consensus 91 v~~p~~~~~y~~~~~~~~~~~~plPt~~~--~l~~l~i~~liEd~~fY~~HRL~H~~-~~Yk~iHKvHHe~taPf~~sa~ 167 (283)
T KOG0873|consen 91 VVLPLTLVSYPFVEWFGLPSGAPLPSWKE--MLAQLVVFFLIEDIGFYWSHRLFHHK-WLYKYIHKVHHEYTAPFGLSAE 167 (283)
T ss_pred HHhhHHHHhHHHHHHhCCCcCCCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHhcch-HHHHHHHhhhhcccCchhHhhh
Confidence 9999998887653 33456899988 89999999999999999999999988 9999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcccceeecCCCccccccccccccCCchhhhhhhcC
Q 011375 172 HATLLEHIVLSAIVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTE 251 (487)
Q Consensus 172 ~~hplE~ll~~~~~~iPll~~~llG~~s~~~i~~y~~~~~~~~~~~Hsn~e~~P~~~~~~~p~l~~li~tp~~H~lHH~~ 251 (487)
|+||+|+++.++. |+.++.+++. |+.+.++|+++..+.+...||||++ |+++.+.+|+ -++.++||+||..
T Consensus 168 YaHp~E~~~lg~~---~~~~p~~~~~-H~~t~wiw~~l~i~~t~~~HsGY~f-Pwsl~~~~pf----y~ga~~HD~HH~~ 238 (283)
T KOG0873|consen 168 YAHPLEHLFLGLG---TVMGPALLCG-HVITLWIWIALRILETVESHSGYDF-PWSLSKLIPF----YGGAEHHDYHHLV 238 (283)
T ss_pred hcCHHHHHHcCCh---hhhhhHHhhh-HHHHHHHHHHHHHHHHhhccCCCCC-CccccccCcc----cCCCcccchhhhh
Confidence 9999999988764 4555555555 8999999999999999999999998 9999888776 3579999999999
Q ss_pred CCCCcccCchhHHhhcCCCCCC
Q 011375 252 KDSNFCLFMPLFDALGNTLNSK 273 (487)
Q Consensus 252 ~~~NYG~~~~lWDrLfGT~~~~ 273 (487)
+.+||+..|+.||+++||+...
T Consensus 239 f~~n~~~~f~~~D~i~GTd~~~ 260 (283)
T KOG0873|consen 239 FIGNFASVFGYLDRIHGTDSTY 260 (283)
T ss_pred ccccccchhHHHHHHhccCccH
Confidence 9999999999999999999754
No 3
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=99.96 E-value=2.6e-28 Score=244.21 Aligned_cols=151 Identities=30% Similarity=0.466 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchHhHHhhccCCCCCCCCcccccccChHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 011375 123 FIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPILGSSIIGYGSISL 202 (487)
Q Consensus 123 li~~~ll~~l~~Df~~Yw~HRllH~~~~ly~r~Hk~HHss~~p~~~ta~~~hplE~ll~~~~~~iPll~~~llG~~s~~~ 202 (487)
+++++++..++.|+.+||.||+.|+. ++||++|++||++++|+++|+.+.||+|.++......+|+. ++|. +..+
T Consensus 95 ~~l~~~~~~~~~D~~~Y~~HR~~H~~-~~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~~~~~~~---l~~~-~~~~ 169 (271)
T COG3000 95 FALQLLLAFLFLDLGYYWAHRLLHRV-PLLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFLGLLPLL---LLGL-SPVA 169 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHhhcCcccCCchhhhhcChHHHHHHHHHHHHHHH---HhcC-CHHH
Confidence 46667777888999999999999999 99999999999999999999999999999998877666654 3443 6777
Q ss_pred HHHHHHHHHHHHhhcccceeecCCCccccccccccccCCchhhhhhhcCC--CCCcccCchhHHhhcCCCCCCCcchhhh
Q 011375 203 IYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTEK--DSNFCLFMPLFDALGNTLNSKSWEDHKK 280 (487)
Q Consensus 203 i~~y~~~~~~~~~~~Hsn~e~~P~~~~~~~p~l~~li~tp~~H~lHH~~~--~~NYG~~~~lWDrLfGT~~~~~~~~~~~ 280 (487)
+.++.++..+.+.++|||++. | .. .++++.++.||++|++||+++ ++|||.++++|||+|||+.++.++.+++
T Consensus 170 ~~~~~~~~~~~~~~~H~~~~~-~-~~---~~~~~~v~~~p~~H~lHH~~~~~~~Nyg~~~~~WDrlFGT~~~~~~~~~~~ 244 (271)
T COG3000 170 VALLFIFLLFWAVLIHSNLDL-P-LP---LGWLRYVFNTPRHHRLHHSKDPYDKNYGVTLTFWDRLFGTYHPPDEREPDK 244 (271)
T ss_pred HHHHHHHHHHHHHHHhcCccc-c-CC---cccceeeecCchHHHHhccCCCCCCcchhhhHHHHHHcccCCCCcccCccc
Confidence 888889999999999999997 5 32 256667789999999999987 4999999999999999999999888888
Q ss_pred hhc
Q 011375 281 ITS 283 (487)
Q Consensus 281 ~~~ 283 (487)
++.
T Consensus 245 ~~~ 247 (271)
T COG3000 245 IGV 247 (271)
T ss_pred ccc
Confidence 765
No 4
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=99.87 E-value=6.1e-22 Score=194.53 Aligned_cols=142 Identities=15% Similarity=0.100 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchHhHHhhccCCCCCCCCcccccccChHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 011375 123 FIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPILGSSIIGYGSISL 202 (487)
Q Consensus 123 li~~~ll~~l~~Df~~Yw~HRllH~~~~ly~r~Hk~HHss~~p~~~ta~~~hplE~ll~~~~~~iPll~~~llG~~s~~~ 202 (487)
..+.+.+.++..|+.+||.||.+|++ .+||+.|+.||+++.++|+++.++||++.+++++. -....+.-+.|..+
T Consensus 128 ~~~~i~~flfF~Df~iYw~HR~lH~~-~vy~~LH~~HH~~~~~tpfAslafhpidg~lqaip----~~I~~Fi~Plh~~t 202 (312)
T KOG0872|consen 128 LFVSIFLFLFFTDFGIYWAHRELHHR-GVYKRLHKPHHIWNICTPFASLAFHPIDGFLQAIP----YHIYPFIFPLHKVT 202 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-HHHhhhcchhhhhhccCchhhhhcCcchhHhhhch----hHheeeeecchHHH
Confidence 45556666778899999999999999 99999999999999999999999999999987753 32222222335667
Q ss_pred HHHHHHHHHHHHhhcccceeecCCCccccccccccccCCchhhhhhhcCCCCCcccCchhHHhhcCCCCCCCcchhh
Q 011375 203 IYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHK 279 (487)
Q Consensus 203 i~~y~~~~~~~~~~~Hsn~e~~P~~~~~~~p~l~~li~tp~~H~lHH~~~~~NYG~~~~lWDrLfGT~~~~~~~~~~ 279 (487)
.++...+..+++++.|.|.-. -+.+.++||.+|..||..++.|||.++++|||+|||++.+.++.++
T Consensus 203 ~L~l~~f~~iwt~~IHd~~~~----------~l~~~ingaahHtvHH~~f~~NYG~~tilwDrmfgSfr~p~~~~~d 269 (312)
T KOG0872|consen 203 YLSLFTFVNIWTISIHDGIYG----------SLNPPINGAAHHTVHHTYFDYNYGQYTILWDRMFGSFRAPDHEDFD 269 (312)
T ss_pred HHHHHHHHHhHheeeeccccc----------cccCccccccccceeeeeEecCCCcEEEeHHhccCcccCccccccc
Confidence 777777888999999998653 1345578999999999999999999999999999999998877655
No 5
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=99.85 E-value=2.2e-22 Score=192.30 Aligned_cols=148 Identities=26% Similarity=0.361 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchHhHHhhccCCCCCCCCcccccccChHHHHHHHHHHH-HHHHHHHhhcchhHH
Q 011375 123 FIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVA-IPILGSSIIGYGSIS 201 (487)
Q Consensus 123 li~~~ll~~l~~Df~~Yw~HRllH~~~~ly~r~Hk~HHss~~p~~~ta~~~hplE~ll~~~~~~-iPll~~~llG~~s~~ 201 (487)
.+.+++..+++.|.+.|++||.||..+.+|+.+|++||+-.+|.+..|.+.||+|.++...+.+ +.. .+.|- ++-
T Consensus 122 ~A~q~f~aflviDtWQYF~HRymH~NK~LYk~iHs~HHrL~VPYayGALyNhP~EGllLDT~G~gla~---l~sgl-spr 197 (287)
T KOG0874|consen 122 LARQFFAAFLVIDTWQYFLHRYMHMNKFLYKHIHSQHHRLIVPYAYGALYNHPVEGLLLDTIGGGLAF---LLSGL-SPR 197 (287)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhceeEecchhhhhhhcCcchhhhhhhhchHHHH---HHcCC-Ccc
Confidence 4567888889999999999999999989999999999999999999999999999998776532 211 12344 344
Q ss_pred HHHHHHHHHHHHHhhcccceeecCCCccccccccccccCCchhhhhhhcC--CCCCccc-CchhHHhhcCCCCCCCcchh
Q 011375 202 LIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTE--KDSNFCL-FMPLFDALGNTLNSKSWEDH 278 (487)
Q Consensus 202 ~i~~y~~~~~~~~~~~Hsn~e~~P~~~~~~~p~l~~li~tp~~H~lHH~~--~~~NYG~-~~~lWDrLfGT~~~~~~~~~ 278 (487)
+.+++..+.++.++.+|||+-+ |-.+++.+ +-+.+.+||+||+. .++||+. ||++||+++||+.+.+.|..
T Consensus 198 ~aiifFtfaTiKTVDDHCGy~l-P~dpfqm~-----F~NNa~YHDiHHQ~yG~k~NFsQPFFtfWD~ilgTYmp~~~E~~ 271 (287)
T KOG0874|consen 198 TAIIFFTFATIKTVDDHCGYWL-PGDPFQMF-----FPNNAAYHDIHHQLYGTKYNFSQPFFTFWDRILGTYMPYSLEKR 271 (287)
T ss_pred ceEEEEEeeeeeeecccccccc-CCCceeEe-----ccCCchhhhhhhhhhccccccCCcHHHHHHHHHhhcCCchhccc
Confidence 4445667888899999999998 88766542 23579999999997 6899995 89999999999998765554
Q ss_pred hh
Q 011375 279 KK 280 (487)
Q Consensus 279 ~~ 280 (487)
.+
T Consensus 272 ~e 273 (287)
T KOG0874|consen 272 LE 273 (287)
T ss_pred cc
Confidence 44
No 6
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.72 E-value=7.8e-18 Score=144.98 Aligned_cols=112 Identities=28% Similarity=0.348 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHhhcCCcchHhHHhhccCCCCCCCCcccccccChHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 011375 129 LHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPILGSSIIGYGSISLIYGYIL 208 (487)
Q Consensus 129 l~~l~~Df~~Yw~HRllH~~~~ly~r~Hk~HHss~~p~~~ta~~~hplE~ll~~~~~~iPll~~~llG~~s~~~i~~y~~ 208 (487)
+.+++.|+.+||+||++|+.+++| ++|+.||++++|+++++.+.+|+|.++..++ +++++.+++..+..++.++.+
T Consensus 3 ~~~l~~d~~~Y~~HRl~H~~~~l~-~~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 78 (114)
T PF04116_consen 3 LGFLLWDFWEYWMHRLLHKIPFLW-RIHKVHHSPKNPTPLSAFRFHPLEALLLALL---PLLLPLLLLPFHALAFLLGIA 78 (114)
T ss_pred eeHHHHHHHHHHHHHHHhcCchHH-HHHHHHhCCcccCchHHHHcChHHHHHHHHH---HHHHHHHHHhHhHHHHHHHHH
Confidence 345678999999999999663666 9999999999999999999999999987664 332222333446777888888
Q ss_pred HHHHHHhhcccceeecCCCccccccccccccCCchhhhhhhc
Q 011375 209 MFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHT 250 (487)
Q Consensus 209 ~~~~~~~~~Hsn~e~~P~~~~~~~p~l~~li~tp~~H~lHH~ 250 (487)
+..+.+.++|||+.. + ..+..+++..+|++|+.||+
T Consensus 79 ~~~~~~~~~H~~~~~-~-----~~~~~~~~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 79 LFYLWYIFIHSGYHH-R-----FPPRLRYLFVTPRHHDLHHS 114 (114)
T ss_pred HHHHHHHHhhcCccC-C-----CCCcchhHhcCHHHHHhhCc
Confidence 999999999999932 1 12456778889999999996
No 7
>PLN02434 fatty acid hydroxylase
Probab=99.09 E-value=2.7e-09 Score=105.48 Aligned_cols=135 Identities=22% Similarity=0.247 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-cCCcc------hHhHHhhccCCCCCCCCcccccccChHHHHHHHHHHHHHHHHHHhh
Q 011375 123 FIALQILHVAVSEPLYYVLHRH-FHRNK------YLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPILGSSII 195 (487)
Q Consensus 123 li~~~ll~~l~~Df~~Yw~HRl-lH~~~------~ly~r~Hk~HHss~~p~~~ta~~~hplE~ll~~~~~~iPll~~~ll 195 (487)
.+..+++.+++..+.+|.+||. +|..+ .+....|..||..+.- ..-..++|.-.++....+..++. .++
T Consensus 83 ~~~~~~~G~~~wtl~EY~lHRflfH~~p~~~~~~~~hfllHg~HH~~P~D--~~rLv~PP~~~~~l~~~~~~l~~--~~~ 158 (237)
T PLN02434 83 VVLMVAFGVFIWTLLEYILHRFLFHIKTKSYWGNTAHYLLHGCHHKHPMD--GLRLVFPPAATAILCVPFWNLIA--LFA 158 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHhhcCCCC--CCCeecCcHHHHHHHHHHHHHHH--HHc
Confidence 4556777888999999999997 78531 2334678899975432 23334667665544433221111 111
Q ss_pred cch-----hHHHHHHHHHHHHHHHhhcccceeecCCCccccccccccccCCchhhhhhhcC-CCCCcccCchhHHhhcCC
Q 011375 196 GYG-----SISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTE-KDSNFCLFMPLFDALGNT 269 (487)
Q Consensus 196 G~~-----s~~~i~~y~~~~~~~~~~~Hsn~e~~P~~~~~~~p~l~~li~tp~~H~lHH~~-~~~NYG~~~~lWDrLfGT 269 (487)
+.. -...+.+|+.|-.. ....|.+ + |++ ++.+. --++|..||-+ .+.|||...++||++|||
T Consensus 159 ~~~~a~~~~~G~l~gYl~Yd~~-Hy~lH~~-~--p~~-----~~~r~---lkr~H~~HHfk~~~~~fGVTs~~wD~vFGT 226 (237)
T PLN02434 159 TPATAPALFGGGLLGYVMYDCT-HYFLHHG-Q--PST-----DVLRN---LKKYHLNHHFRDQDKGFGITSSLWDRVFGT 226 (237)
T ss_pred chhHHHHHHHHHHHHHHHHHHH-HHHHHhc-C--cch-----HHHHH---HHHHHHHHcCCCCCCCCCcCchHHHHhcCC
Confidence 110 12235566655444 4445543 2 432 23332 35799999976 699999999999999999
Q ss_pred CCCC
Q 011375 270 LNSK 273 (487)
Q Consensus 270 ~~~~ 273 (487)
..++
T Consensus 227 ~~~~ 230 (237)
T PLN02434 227 LPPS 230 (237)
T ss_pred CCCc
Confidence 9654
No 8
>PRK14982 acyl-ACP reductase; Provisional
Probab=98.49 E-value=1.1e-06 Score=91.42 Aligned_cols=163 Identities=18% Similarity=0.226 Sum_probs=109.8
Q ss_pred EEEeeeccccccccC--cccchhhcccCCCCCccccccchhHHHHHHHHHHHhccceEEeeeecCCc---ceeeEEe--e
Q 011375 294 FVFLAHVVDVTASMH--PPFVFRSLASLPYSPKLFMLPFWPLAFSAMFALWAWSKTFLISFYWLRGR---LHQTWAV--P 366 (487)
Q Consensus 294 ~VfLah~~~~~s~~h--~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~f~~~~~~~~~~---~~~~w~~--p 366 (487)
|.|+.|.++.++.=+ ..++|+- | .|-.+. .|..-.+|++++-+.+.- ..+-|.| |
T Consensus 2 f~fi~H~~~~~~~~~~~~~~~~~~-----~---------~~~~l~----~~~~~~p~~~~~~~v~S~~g~~~eg~~i~~~ 63 (340)
T PRK14982 2 FGLIGHLTSLEHAQRVARELGYDE-----Y---------ADQDLD----FWCSAPPQLVDHIEVTSATGQTIEGKYIESC 63 (340)
T ss_pred EEEEeccCCHHHhHHHHhcCCccc-----c---------ChHhHH----HHhhCCCeEeeeEEEEeCCCCEEEEEEEeCC
Confidence 679999999886432 2223211 1 122222 155567999999887644 4467776 3
Q ss_pred ccCccccccchhhhhHHHHHHHHHHHhhcCCeEEEecccccccccccCceeee-ecCCCCce---EEecCCchhhHHhhh
Q 011375 367 RYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFV-DKHPNLKV---RVVHGNTCTAAVILN 442 (487)
Q Consensus 367 r~~~~y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~-~~~p~l~~---rvv~g~~l~~a~v~~ 442 (487)
-.+=|- .....+..=+.|.+|+..|++.|++|..||...+--. +++.+-+ ++-.++++ ++-+|||+||++...
T Consensus 64 ~~pe~l-~~~~~~~~~~~~~~a~~~a~~~G~~i~~Lg~~tsiv~--~~~~~~~~~~~r~i~ie~~~~TtGNs~T~~ll~~ 140 (340)
T PRK14982 64 FLPEML-SNRRFKTARRKVLNAMALAQKKGINITALGGFSSIIF--ENFNLLQHKQVRNTTLEWERFTTGNTHTAYVICR 140 (340)
T ss_pred CCHHHH-hccChHHHHHHHHHHHHHHHHCCCeEEEcCChHHHhc--CCcccccccccccceeccccccCCchhHHHHHHH
Confidence 333233 3223344446788899999999999999999877543 2223332 34466777 899999999998886
Q ss_pred cCCC---------ccceEEEeCCcchHHHHHHHHhhcc-Cc-EEEe
Q 011375 443 ELPK---------DVKEVFLTGATSKLGRAIALYLCRK-RV-RVLK 477 (487)
Q Consensus 443 ~ip~---------~~~~v~l~g~~~k~~~a~a~~lc~~-~~-~v~~ 477 (487)
.+.. .-+.|++||++|.+|+.+|..|+++ |+ ++.+
T Consensus 141 ~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lil 186 (340)
T PRK14982 141 QVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLL 186 (340)
T ss_pred HHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEE
Confidence 6532 3478999999999999999999864 65 5655
No 9
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=97.75 E-value=0.00012 Score=70.98 Aligned_cols=134 Identities=25% Similarity=0.287 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-cCCc--ch------HhHHhhccCCCCCCCCcccccccChHHHHHHHHHHHHHHHH---
Q 011375 124 IALQILHVAVSEPLYYVLHRH-FHRN--KY------LFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPILG--- 191 (487)
Q Consensus 124 i~~~ll~~l~~Df~~Yw~HRl-lH~~--~~------ly~r~Hk~HHss~~p~~~ta~~~hplE~ll~~~~~~iPll~--- 191 (487)
...+++.++...+.+|-+||+ +|.. +. +---+|.-||.-+.-- .-..++|.-..+....+..++-.
T Consensus 84 ~~~f~~Gvf~WTl~EY~lHRflFH~k~~~~s~~~~t~Hfl~HGcHHk~P~D~--~RLVfPP~~~~il~~pfy~~~~~vl~ 161 (240)
T KOG0539|consen 84 SGLFVIGVFTWTLIEYTLHRFLFHIKPNPDSYWLITLHFLIHGCHHKLPMDG--YRLVFPPTPFAILAAPFYLILSLVLP 161 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHheEEEecCCCCchHHHHHHHHHhcccccCCCCC--ceEecCCchHHHHHHHHHHHHHHhcC
Confidence 445667778899999999998 5644 11 1124789999754322 33467777776655544322211
Q ss_pred ----HHhhcchhHHHHHHHHHHHHHHHhhcccceeecCCCccccccccccccCCchhhhhhhcC-CCCCcccCchhHHhh
Q 011375 192 ----SSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTE-KDSNFCLFMPLFDAL 266 (487)
Q Consensus 192 ----~~llG~~s~~~i~~y~~~~~~~~~~~Hsn~e~~P~~~~~~~p~l~~li~tp~~H~lHH~~-~~~NYG~~~~lWDrL 266 (487)
++.+ ...+++|+.+-...-.+.|.+- |+. |.++. --.+|.-||-+ .+.-||...++||++
T Consensus 162 ~~~~~a~f----aG~l~GYV~YDmtHYyLHhg~p---~~~-----~~~~~---lK~yHl~HHfk~q~~GfGItS~lWD~V 226 (240)
T KOG0539|consen 162 HPVAPAGF----AGGLLGYVCYDMTHYYLHHGSP---PKR-----PYLKH---LKKYHLNHHFKHQDLGFGITSSLWDYV 226 (240)
T ss_pred cchhhhhh----ccchhhhhhhhhhhhhhhcCCC---CCc-----hHHHH---HHHHHhhhhhhccccCccccHHHHHHH
Confidence 1111 1236778888766666777642 221 22222 35789999976 799999999999999
Q ss_pred cCCCCCCC
Q 011375 267 GNTLNSKS 274 (487)
Q Consensus 267 fGT~~~~~ 274 (487)
|||.-...
T Consensus 227 FgTl~~~~ 234 (240)
T KOG0539|consen 227 FGTLGPLK 234 (240)
T ss_pred hccCCCCc
Confidence 99997654
No 10
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.54 E-value=0.00029 Score=75.21 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchHhHHhhccCCCCCCCCcc---------cccccChHHHHHHHHHHHHHHHHHH-hhcc
Q 011375 128 ILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIP---------TAGHATLLEHIVLSAIVAIPILGSS-IIGY 197 (487)
Q Consensus 128 ll~~l~~Df~~Yw~HRllH~~~~ly~r~Hk~HHss~~p~~~---------ta~~~hplE~ll~~~~~~iPll~~~-llG~ 197 (487)
+...++.|..+=.+|-+.|.. ..+.|.|..||+.-.++-- +..++.|.|+++..++..+|-.... ....
T Consensus 13 ~~~~~~~~~~~d~~h~~~h~~-~~l~~~h~~hh~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 91 (406)
T PRK07424 13 LGSILWVEIVRDSYHALAHQW-NPLYRLHNWHHRVFRPDLSVVSEEIYRKAHWYNDVPEALVMLLFGTLPVLLLQQWNVP 91 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-hHHHHHHHhHHhhcCCcCCcccHHHHhhhhhhcCCHHHHHHHHHhhHHHHHHhhhccc
Confidence 334455677777778888877 4555899999998877533 3679999997765554333322111 1000
Q ss_pred hhH------HHHHHHH---HHHHHHHhhcc-ccee--ecCCCccccccccccccCCchhhhhhhcCC-CCCcccCchhHH
Q 011375 198 GSI------SLIYGYI---LMFDFLRCLGH-CNVE--IIPHRWFETFPFLRYLLYTPTYHSLHHTEK-DSNFCLFMPLFD 264 (487)
Q Consensus 198 ~s~------~~i~~y~---~~~~~~~~~~H-sn~e--~~P~~~~~~~p~l~~li~tp~~H~lHH~~~-~~NYG~~~~lWD 264 (487)
..+ ...+.++ +.+.. ..... ++-| -.|..+. . ++..| +..+.||-.||-.. +.-||..+++.|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~d~~h~~~~~~-~-~~~~~-~v~~~~h~rh~~~~~~~~~~~~~~~~d 167 (406)
T PRK07424 92 YGWLAWLGVLYTLTFLFGAIARGL-GLPNADELTDLTHLPGPFE-T-LPSQW-FVNRPYHWRHHFDNQNAYYCGTFTLVD 167 (406)
T ss_pred ccchhhhhhHHHHHHHHHHHHHhc-ccccccccccccCCCCccc-C-CCccC-eecCceeEEEEeccccceeeeeEEEee
Confidence 001 1111121 11111 11112 1111 1232222 2 33445 56789999999875 488999999999
Q ss_pred hhcCCCCC
Q 011375 265 ALGNTLNS 272 (487)
Q Consensus 265 rLfGT~~~ 272 (487)
+..||...
T Consensus 168 ~~~~ta~s 175 (406)
T PRK07424 168 KLMGTALS 175 (406)
T ss_pred hhcCcccC
Confidence 99999753
No 11
>PLN02601 beta-carotene hydroxylase
Probab=97.53 E-value=0.00039 Score=69.72 Aligned_cols=131 Identities=22% Similarity=0.319 Sum_probs=70.8
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHHhh-cCCcchHhHHhhccCCCCCCCCcccccccChHHHHHHHHHHHHHHHH
Q 011375 113 ESLPRWNTKGFIALQILHVAVSEPLYYVLHRH-FHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPILG 191 (487)
Q Consensus 113 ~~lP~W~~~gli~~~ll~~l~~Df~~Yw~HRl-lH~~~~ly~r~Hk~HHss~~p~~~ta~~~hplE~ll~~~~~~iPll~ 191 (487)
.+.|.-.-.+.++.++..++..|++-.|.||. +|-. .|..|+-||+...-. + ..++. .++++++|.+.
T Consensus 126 g~~p~~em~~~~al~lgtfvgMEf~Aw~aHKYvMHG~---LW~lH~sHH~Pr~g~-F--E~NDl-----FaVifAvpAIa 194 (303)
T PLN02601 126 GEVSMLEMFGTFALSVGAAVGMEFWARWAHRALWHDS---LWNMHESHHKPREGA-F--ELNDV-----FAIVNAVPAIG 194 (303)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---chhhhhhcCCCCCCC-c--ccccc-----hhhhhHHHHHH
Confidence 45665221123334455666779999999997 6654 578999999876421 1 12221 11222333333
Q ss_pred HHhhcchh-------------HHHHHHHHHHHHHHHhhcccceeecCCCccccccccccccCCchhhhhhhcC--CCCCc
Q 011375 192 SSIIGYGS-------------ISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTE--KDSNF 256 (487)
Q Consensus 192 ~~llG~~s-------------~~~i~~y~~~~~~~~~~~Hsn~e~~P~~~~~~~p~l~~li~tp~~H~lHH~~--~~~NY 256 (487)
++..|..+ =.++++ +.|+.+...+.|--+.+.| ...-|+++.+ ..-|.+||+. ...+|
T Consensus 195 L~~~G~~~~g~~p~~~fgiGlGITlYG-iaYffVHDgLVHqRfp~~~---~a~~~Y~rrl---~~AHklHHa~Ke~Gv~F 267 (303)
T PLN02601 195 LLYYGFFNKGLVPGLCFGAGLGITVFG-MAYMFVHDGLVHKRFPVGP---IANVPYLRKV---AAAHQLHHTDKFKGVPY 267 (303)
T ss_pred HHHHhhccccccHHHHHHHHHhHHHHH-HHHHHHhhhhhccccccCC---CCCCHHHHHH---HHHHHhhccCCcCCccc
Confidence 22233210 011222 2355566677777543322 2222555553 5799999983 56799
Q ss_pred ccCch
Q 011375 257 CLFMP 261 (487)
Q Consensus 257 G~~~~ 261 (487)
|.++.
T Consensus 268 Gfll~ 272 (303)
T PLN02601 268 GLFLG 272 (303)
T ss_pred eEEec
Confidence 98654
No 12
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.50 E-value=0.034 Score=56.58 Aligned_cols=100 Identities=24% Similarity=0.243 Sum_probs=70.1
Q ss_pred chhhhhHHHHHHHHHHHhhcCCeEEEecccccccccccCceeeeecCCCC-ceEEecCCchhhHHhhhcCCC--------
Q 011375 376 FAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNL-KVRVVHGNTCTAAVILNELPK-------- 446 (487)
Q Consensus 376 ~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p~l-~~rvv~g~~l~~a~v~~~ip~-------- 446 (487)
++-+.+-+-+-+|+.-|+|.|+.|.+||.------ |. |+----+.|.+ -.|+-.|||+||-++..++=+
T Consensus 87 s~pkaatrrvl~a~~~a~~~Ga~V~gLGgFssIVg-n~-~~n~q~~~~e~t~~~~ttgns~Tayaa~r~Vl~~~~~lGid 164 (351)
T COG5322 87 SRPKAATRRVLNAMALAQKLGADVTGLGGFSSIVG-NL-GQNVQVRNVELTFTRFTTGNSHTAYAACRQVLKHFAQLGID 164 (351)
T ss_pred hCHHHHHHHHHHHHHHHHHcCCeEEeecchhhhhc-cc-cccccccceEEEEEecccCCccchHHHHHHHHHHHHHhCcC
Confidence 34566667777788889999999999986421100 00 00001244555 568889999999998887733
Q ss_pred -ccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 447 -DVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 447 -~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.-.+|=.+|+||-+|.|||..|.-++-+..|
T Consensus 165 lsqatvaivGa~G~Ia~~Iar~la~~~~~~~l 196 (351)
T COG5322 165 LSQATVAIVGATGDIASAIARWLAPKVGVKEL 196 (351)
T ss_pred HHHCeEEEecCCchHHHHHHHHhccccCEEEE
Confidence 1237899999999999999999977555444
No 13
>PRK06196 oxidoreductase; Provisional
Probab=93.45 E-value=0.13 Score=52.16 Aligned_cols=41 Identities=24% Similarity=0.226 Sum_probs=34.6
Q ss_pred hHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 437 AAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 437 ~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.-+.|.++-.-|.|++||++|-+|+++|..|.++|.+|++
T Consensus 15 ~~~~~~~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~ 55 (315)
T PRK06196 15 AEEVLAGHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIV 55 (315)
T ss_pred HHHHhcCCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 44455666544578999999999999999999999999998
No 14
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.84 E-value=0.1 Score=54.11 Aligned_cols=43 Identities=28% Similarity=0.249 Sum_probs=36.9
Q ss_pred hhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 435 CTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 435 l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.+|-.+.++++-.-+-+..||+||-+|+++|..|++||.+|.|
T Consensus 22 ~~~~~~~~~~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~ 64 (314)
T KOG1208|consen 22 TTALEVTHGIDLSGKVALVTGATSGIGFETARELALRGAHVVL 64 (314)
T ss_pred eecceeeccccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEE
Confidence 3444566777766688999999999999999999999999999
No 15
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=92.70 E-value=0.1 Score=53.98 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=27.0
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+=...||+|+++|+|.|.-|||||.+|..
T Consensus 50 ~WAVVTGaTDGIGKayA~eLAkrG~nvvL 78 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYARELAKRGFNVVL 78 (312)
T ss_pred CEEEEECCCCcchHHHHHHHHHcCCEEEE
Confidence 45688999999999999999999999988
No 16
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.26 E-value=0.2 Score=56.01 Aligned_cols=46 Identities=30% Similarity=0.419 Sum_probs=37.4
Q ss_pred CCchhhHHhhhcCCC-----ccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 432 GNTCTAAVILNELPK-----DVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 432 g~~l~~a~v~~~ip~-----~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|.+...+....-+|+ +-|-|++||++|.+|++++..|+++|.+|..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vva 109 (576)
T PLN03209 59 GATKFSSAAIEAIPKELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRA 109 (576)
T ss_pred cchhhhhhhhhccccccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEE
Confidence 455555666677775 3357999999999999999999999999987
No 17
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=91.66 E-value=0.21 Score=47.94 Aligned_cols=56 Identities=16% Similarity=0.273 Sum_probs=39.0
Q ss_pred HHHhhcccceeecCCCccccccccccccCCchhhhhhhcC-CCCCcccCchhHHhhcCCC
Q 011375 212 FLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTE-KDSNFCLFMPLFDALGNTL 270 (487)
Q Consensus 212 ~~~~~~Hsn~e~~P~~~~~~~p~l~~li~tp~~H~lHH~~-~~~NYG~~~~lWDrLfGT~ 270 (487)
-..-+.|.... .|.+.. .+-- .-++.+|..|..||.. +++|||...++||.+....
T Consensus 100 q~HkWsH~~~~-~P~~V~-~LQ~-~gillsr~~H~~HH~aPh~~~YCI~tGw~N~~Ld~~ 156 (178)
T PF10520_consen 100 QFHKWSHTYKS-LPPWVR-FLQD-AGILLSRKHHRIHHVAPHDTNYCITTGWLNPPLDKI 156 (178)
T ss_pred HHHHHHcCCCC-CCHHHH-HHHH-CCcccCchhhhccccCcccCCeEeecccchHHHHHh
Confidence 33566788655 354321 1111 2356799999999998 8999999999999887644
No 18
>PLN02780 ketoreductase/ oxidoreductase
Probab=91.16 E-value=0.25 Score=50.69 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=27.7
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+-|++||+||-+|+++|..|+++|.+|.+
T Consensus 54 ~~~lITGAs~GIG~alA~~La~~G~~Vil 82 (320)
T PLN02780 54 SWALVTGPTDGIGKGFAFQLARKGLNLVL 82 (320)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCCEEE
Confidence 57899999999999999999999999998
No 19
>PRK05866 short chain dehydrogenase; Provisional
Probab=90.18 E-value=0.37 Score=48.56 Aligned_cols=29 Identities=38% Similarity=0.572 Sum_probs=27.8
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.|++||++|-+|+++|..|+++|.+|.+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~ 69 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVA 69 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence 67999999999999999999999999988
No 20
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=89.33 E-value=0.45 Score=49.74 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=31.0
Q ss_pred cCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 443 ELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 443 ~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.+..-+.|++||+||.||+++|.+|.++|.+|..
T Consensus 16 ~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~ 50 (370)
T PLN02695 16 YWPSEKLRICITGAGGFIASHIARRLKAEGHYIIA 50 (370)
T ss_pred CCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEE
Confidence 34455678999999999999999999999999987
No 21
>PRK07985 oxidoreductase; Provisional
Probab=88.82 E-value=0.44 Score=47.97 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=27.9
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|.|++||+++=+|+++|..|+++|.+|.+
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~ 78 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAI 78 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEE
Confidence 67999999999999999999999999988
No 22
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=88.70 E-value=0.49 Score=50.82 Aligned_cols=30 Identities=33% Similarity=0.443 Sum_probs=28.1
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-|.|++||++|-+|+|+|..|+++|.+|..
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~G~~Vi~ 207 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQGAKVVA 207 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence 368999999999999999999999999987
No 23
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=87.57 E-value=0.68 Score=48.98 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=31.7
Q ss_pred hhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 441 LNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 441 ~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
..+.+..-+.|++||+||.+|++++..|.++|.+|..
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~ 89 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVA 89 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence 3445555567999999999999999999999999987
No 24
>PRK06128 oxidoreductase; Provisional
Probab=87.04 E-value=0.66 Score=46.65 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=27.8
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|.|++||++|=+|+++|..|+++|.+|.+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i 84 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIAL 84 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEE
Confidence 67999999999999999999999999987
No 25
>PLN02686 cinnamoyl-CoA reductase
Probab=85.86 E-value=0.92 Score=47.39 Aligned_cols=32 Identities=34% Similarity=0.302 Sum_probs=28.9
Q ss_pred CccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 446 KDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 446 ~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
..-|.|++||++|-+|++++..|.++|.+|..
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~ 82 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRI 82 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEE
Confidence 34578999999999999999999999999975
No 26
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=85.78 E-value=1.4 Score=41.78 Aligned_cols=31 Identities=29% Similarity=0.436 Sum_probs=28.5
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.-+.|++.|+||.+|+++|..|+++|.+|.+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l 57 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVL 57 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence 3468999999999999999999999999988
No 27
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.60 E-value=1.5 Score=46.61 Aligned_cols=98 Identities=20% Similarity=0.247 Sum_probs=63.9
Q ss_pred cccchhhhhHHHHHHHHHHHhhcCCeEEEecccccccccccCceeeeecCCCCceEEecCCchhhHH----------hhh
Q 011375 373 FLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAV----------ILN 442 (487)
Q Consensus 373 ~~~~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p~l~~rvv~g~~l~~a~----------v~~ 442 (487)
..+....-+++.|.+.-++=.+.|+.|+++- ++|+.+ .|+-..++--|+.|..+. .+.
T Consensus 158 ~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~---------r~~~~~---~p~~~~~l~~gD~l~v~g~~~~l~~~~~~~~ 225 (453)
T PRK09496 158 KVYEGSPLVGKPLSDLREHFPDIDVRVVAIF---------RGGRLI---IPRGDTVIEAGDEVYFIGAREHIRAVMSEFG 225 (453)
T ss_pred EeCCCCccCCcCHHHhhhhcCCCceEEEEEE---------ECCEEE---cCCCCcEecCCCEEEEEeCHHHHHHHHHHhC
Confidence 3444444455555444322135799998773 234432 367777777787775432 233
Q ss_pred cCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe---chhhhh
Q 011375 443 ELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK---DSRKFR 483 (487)
Q Consensus 443 ~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~---~~~~~~ 483 (487)
+.+...+.|.+.|. |++|+++|..|-++|.+|.+ ++|+.+
T Consensus 226 ~~~~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~ 268 (453)
T PRK09496 226 RLEKPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAE 268 (453)
T ss_pred ccCCCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence 33445688999999 99999999999999999988 555544
No 28
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=85.57 E-value=0.96 Score=48.80 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=30.7
Q ss_pred hcCCCcc----ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 442 NELPKDV----KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 442 ~~ip~~~----~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-.||-|. ..|++||+||-||+.++.+|.++|.+|..
T Consensus 110 ~~~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ 149 (436)
T PLN02166 110 GRVPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIV 149 (436)
T ss_pred CCCCcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEE
Confidence 3455544 36999999999999999999999999987
No 29
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=85.51 E-value=1.2 Score=44.79 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=48.4
Q ss_pred cccCceeeeecC-CCCceEEecCCchh----hHHhhhcCCCccceEEEeCCc--ch--HHHHHHHHhhccCcEEEe--ch
Q 011375 411 LNGGGTLFVDKH-PNLKVRVVHGNTCT----AAVILNELPKDVKEVFLTGAT--SK--LGRAIALYLCRKRVRVLK--DS 479 (487)
Q Consensus 411 ln~~g~l~~~~~-p~l~~rvv~g~~l~----~a~v~~~ip~~~~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~--~~ 479 (487)
+|..+.+-.+|. -.-++...++.... ++.....++ .-+.++|.|.. || |+-|||..||++|++|+. -.
T Consensus 64 ~~~~a~~p~~k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 64 RLRSASFPAKKTFEEFDFEFQPGIDKKALEDLASLVEFFE-RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred HHHHhcCCccCCcccccccCCcchhHHHHHHHHHHHHHhc-cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 333333333333 33366666665544 334445778 77888999988 68 999999999999999998 44
Q ss_pred hhhh
Q 011375 480 RKFR 483 (487)
Q Consensus 480 ~~~~ 483 (487)
|-.+
T Consensus 143 el~~ 146 (254)
T COG1484 143 DLLS 146 (254)
T ss_pred HHHH
Confidence 4444
No 30
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=85.11 E-value=0.92 Score=48.65 Aligned_cols=94 Identities=21% Similarity=0.295 Sum_probs=57.5
Q ss_pred eeEEeeccCc-cccccchhhhhHHHHHHHHHHHhhcCCeEEEe--cccccccccccCceeeeecCCCCceEEecCCchhh
Q 011375 361 QTWAVPRYGF-QYFLPFAQTGINKQIEDAILRADRLGVKVLSL--AALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTA 437 (487)
Q Consensus 361 ~~w~~pr~~~-~y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl--~~ln~~~~ln~~g~l~~~~~p~l~~rvv~g~~l~~ 437 (487)
..-++|.-+- -|.-| .-.+-+..-.+.|+.|+.= |.|-.+|. |-| |-|+. +.+ .
T Consensus 118 pvvi~Pamn~~m~~~p--------~~~~Nl~~L~~~G~~ii~P~~g~la~~~~--g~g-----r~~~~-------~~I-~ 174 (399)
T PRK05579 118 PVLVAPAMNTQMWENP--------ATQRNLATLRSRGVEIIGPASGRLACGDV--GPG-----RMAEP-------EEI-V 174 (399)
T ss_pred CEEEEeCCChhHcCCH--------HHHHHHHHHHHCCCEEECCCCccccCCCc--CCC-----CCCCH-------HHH-H
Confidence 5666665554 23333 3444444445579999854 44444433 222 23433 222 2
Q ss_pred HHhhhcC-CC--ccceEEEeCC----------------cchHHHHHHHHhhccCcEEEe
Q 011375 438 AVILNEL-PK--DVKEVFLTGA----------------TSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 438 a~v~~~i-p~--~~~~v~l~g~----------------~~k~~~a~a~~lc~~~~~v~~ 477 (487)
..|.+.+ |+ .-|.|+.||. +||+|+|+|.+|.++|.+|..
T Consensus 175 ~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~ 233 (399)
T PRK05579 175 AAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTL 233 (399)
T ss_pred HHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEE
Confidence 2333333 23 3468999999 799999999999999999987
No 31
>PRK06484 short chain dehydrogenase; Validated
Probab=83.05 E-value=1.5 Score=47.49 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=28.8
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.-|.++.||+++-+|+++|..|+++|.+|.+
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~ 298 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLI 298 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence 3478999999999999999999999999998
No 32
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=81.96 E-value=1.6 Score=44.49 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=26.5
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCcE-EEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRVR-VLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~~-v~~ 477 (487)
.-|.|+++|+ |-.|||||.+|.+.|++ |.+
T Consensus 125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~I 155 (289)
T PRK12548 125 KGKKLTVIGA-GGAATAIQVQCALDGAKEITI 155 (289)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEE
Confidence 3478999999 69999999999999997 877
No 33
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=81.80 E-value=2 Score=43.44 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=33.5
Q ss_pred cCCchhhHHhh-hcCCCccceEEEeCCcchHHHHHHHHhhccC-cEEEe
Q 011375 431 HGNTCTAAVIL-NELPKDVKEVFLTGATSKLGRAIALYLCRKR-VRVLK 477 (487)
Q Consensus 431 ~g~~l~~a~v~-~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~-~~v~~ 477 (487)
||....+|.-- ..+...-+.|++.|+ |.+|||+|.+|+++| -+|.+
T Consensus 105 D~~G~~~~l~~~~~~~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v 152 (278)
T PRK00258 105 DGIGFVRALEERLGVDLKGKRILILGA-GGAARAVILPLLDLGVAEITI 152 (278)
T ss_pred cHHHHHHHHHhccCCCCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEE
Confidence 55555555532 123344578999997 899999999999999 57887
No 34
>PLN02572 UDP-sulfoquinovose synthase
Probab=81.70 E-value=1.5 Score=47.27 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=27.6
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.|++||++|=||+++|.+|.++|.+|..
T Consensus 48 k~VLVTGatGfIGs~Lv~~L~~~G~~V~~ 76 (442)
T PLN02572 48 KKVMVIGGDGYCGWATALHLSKRGYEVAI 76 (442)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEE
Confidence 57999999999999999999999999987
No 35
>PRK07201 short chain dehydrogenase; Provisional
Probab=81.59 E-value=1.7 Score=48.33 Aligned_cols=29 Identities=38% Similarity=0.542 Sum_probs=27.8
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|.+++||++|-+|+++|..|+++|.+|..
T Consensus 372 k~vlItGas~giG~~la~~l~~~G~~V~~ 400 (657)
T PRK07201 372 KVVLITGASSGIGRATAIKVAEAGATVFL 400 (657)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence 57999999999999999999999999998
No 36
>PLN02206 UDP-glucuronate decarboxylase
Probab=80.57 E-value=1.8 Score=46.79 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=27.7
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.|++||+||=||+.++.+|.++|.+|..
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ 148 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMARGDSVIV 148 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHCcCEEEE
Confidence 67999999999999999999999999987
No 37
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=80.43 E-value=2.2 Score=38.39 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=26.6
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCcE-EEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRVR-VLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~~-v~~ 477 (487)
.-+.|++.|+ |..||++|.+|+++|++ |.+
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i 41 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAKEITI 41 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEE
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEE
Confidence 4678999998 78999999999999999 666
No 38
>PRK06701 short chain dehydrogenase; Provisional
Probab=79.87 E-value=2 Score=43.08 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=27.5
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|.|++||++|=||+++|..|+++|.+|.+
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l 75 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAI 75 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence 57999999999999999999999999987
No 39
>PLN00016 RNA-binding protein; Provisional
Probab=78.22 E-value=2 Score=44.78 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=29.2
Q ss_pred CccceEEEe----CCcchHHHHHHHHhhccCcEEEe
Q 011375 446 KDVKEVFLT----GATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 446 ~~~~~v~l~----g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.+.+.|++| |+||.+|+.++..|.++|.+|..
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~ 85 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTL 85 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEE
Confidence 345779999 99999999999999999999987
No 40
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=78.10 E-value=2.7 Score=45.18 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=33.4
Q ss_pred hHHhhhcC---------CCccceEEEeCCcchHHHH--HHHHhhccCcEEEe
Q 011375 437 AAVILNEL---------PKDVKEVFLTGATSKLGRA--IALYLCRKRVRVLK 477 (487)
Q Consensus 437 ~a~v~~~i---------p~~~~~v~l~g~~~k~~~a--~a~~lc~~~~~v~~ 477 (487)
++.|.|+| .++-|.|+.||++|.+|.| ||.+| +.|..|+.
T Consensus 21 ~~~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~ 71 (398)
T PRK13656 21 EANVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLG 71 (398)
T ss_pred HHHHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEE
Confidence 45566666 3566899999999999999 99999 99998776
No 41
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.94 E-value=2.6 Score=43.64 Aligned_cols=28 Identities=36% Similarity=0.573 Sum_probs=26.0
Q ss_pred eEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 450 EVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 450 ~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-|+.||+.|=+||+||+-+.|||-++..
T Consensus 40 ~vLITGgg~GlGr~ialefa~rg~~~vl 67 (300)
T KOG1201|consen 40 IVLITGGGSGLGRLIALEFAKRGAKLVL 67 (300)
T ss_pred EEEEeCCCchHHHHHHHHHHHhCCeEEE
Confidence 5788999999999999999999998876
No 42
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=77.74 E-value=3.3 Score=41.53 Aligned_cols=46 Identities=22% Similarity=0.207 Sum_probs=33.7
Q ss_pred cCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 431 HGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 431 ~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
||....++.--+..+..-+.|+++|+ |-+|+|+|.+|++.|.+|.+
T Consensus 100 D~~G~~~~l~~~~~~~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v 145 (270)
T TIGR00507 100 DGIGLVSDLERLIPLRPNQRVLIIGA-GGAARAVALPLLKADCNVII 145 (270)
T ss_pred CHHHHHHHHHhcCCCccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEE
Confidence 55555555321112334578999998 68999999999999999888
No 43
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=77.14 E-value=2.9 Score=47.70 Aligned_cols=104 Identities=16% Similarity=0.250 Sum_probs=62.1
Q ss_pred cCCcceeeEEeeccCc-cccccchhhhhHHHHHH----HHHHHhhcCCeEEEecccccccccccCceeeeecCCCCceE-
Q 011375 355 LRGRLHQTWAVPRYGF-QYFLPFAQTGINKQIED----AILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVR- 428 (487)
Q Consensus 355 ~~~~~~~~w~~pr~~~-~y~~~~~~~~in~~ie~----ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p~l~~r- 428 (487)
+++-+-..-.||--|. -+.-..+...|+..|-+ +|++|+..| +.-.|.+.|...- | |.+. ..-|.+
T Consensus 334 ~~~~~p~~~~~~~~g~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~f~~--e-yw~~-e~~kl~~ 405 (676)
T TIGR02632 334 MRDPNPRVLLIPGVGMISFGKDKETARVAREFYVNAINVMRGAEAVS----EYVSLPEQEAFDI--E-YWPL-EEAKLRR 405 (676)
T ss_pred ccCCCCeEEEEcCcceEEecCCHHHhhhhHHHHHHHHHHHhhhhccc----ceecCchhhccch--h-hhhh-hHHhhcc
Confidence 4444557788898887 55555566667765543 355555444 3334555544333 1 2200 111111
Q ss_pred EecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 429 VVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 429 vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.. +..+-.-|-|++||++|-+|+++|..|+++|.+|..
T Consensus 406 ~~-----------~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi 443 (676)
T TIGR02632 406 MP-----------KEKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVL 443 (676)
T ss_pred CC-----------CCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEE
Confidence 10 011112467999999999999999999999999988
No 44
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=75.75 E-value=2.6 Score=45.44 Aligned_cols=52 Identities=31% Similarity=0.372 Sum_probs=40.1
Q ss_pred ceEEecCCchhhHHhhhc-CCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 426 KVRVVHGNTCTAAVILNE-LPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 426 ~~rvv~g~~l~~a~v~~~-ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.+.++|.+--++|=.-. =+...+.||.+|+|||+||=|+.-|-+||..|.-
T Consensus 56 ~~~~~~~~~~e~~v~~~~~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra 108 (411)
T KOG1203|consen 56 PISPVTGTTSEAEVSPPNNNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRA 108 (411)
T ss_pred CCCccccccceeeeccCCCCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeee
Confidence 456667766666543222 2346779999999999999999999999999887
No 45
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=73.09 E-value=38 Score=32.88 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=13.5
Q ss_pred hHhHHhhccCCCCCCCC
Q 011375 150 YLFIHYHSLHHSSPVPQ 166 (487)
Q Consensus 150 ~ly~r~Hk~HHss~~p~ 166 (487)
..|++.|..||+.++..
T Consensus 73 ~~w~~~H~~HH~~~~~~ 89 (207)
T cd03514 73 PVFRRVHMQHHAHTNDP 89 (207)
T ss_pred HHHHHHHHHHhcCcCcC
Confidence 46889999999988643
No 46
>PRK07340 ornithine cyclodeaminase; Validated
Probab=72.36 E-value=16 Score=37.66 Aligned_cols=83 Identities=20% Similarity=0.229 Sum_probs=58.2
Q ss_pred hcCCeEEEeccccccccccc-Cceeeeec-CCCCceEEecCCchhh-------HHhhhcC-CCccceEEEeCCcchHHHH
Q 011375 394 RLGVKVLSLAALNKNESLNG-GGTLFVDK-HPNLKVRVVHGNTCTA-------AVILNEL-PKDVKEVFLTGATSKLGRA 463 (487)
Q Consensus 394 ~~g~kv~sl~~ln~~~~ln~-~g~l~~~~-~p~l~~rvv~g~~l~~-------a~v~~~i-p~~~~~v~l~g~~~k~~~a 463 (487)
..|+|+++.--=|..+.|.. .|.+.+.- .-..-.=++||+.||+ |+-.+-+ +++.+.|.+.|+ |..|++
T Consensus 61 ~~g~K~~~~~p~N~~~glp~~~g~i~l~d~~tG~p~a~~d~~~lT~~RTaA~sala~~~La~~~~~~v~IiGa-G~qa~~ 139 (304)
T PRK07340 61 LAITKLVTVCPGNAARGLPTIQGEVVVADAATGERLFLLDGPTVTGRRTAAVSLLAARTLAPAPPGDLLLIGT-GVQARA 139 (304)
T ss_pred ccEEEEEEeCCCCccCCCCcceEEEEEEECCCCcEEEEEcChhHHHHHHHHHHHHHHHHhCCCCCCEEEEECC-cHHHHH
Confidence 46999998766565544433 34544432 2345567899999985 3445555 678999999998 899999
Q ss_pred HHHHhhc-cCcE-EEe
Q 011375 464 IALYLCR-KRVR-VLK 477 (487)
Q Consensus 464 ~a~~lc~-~~~~-v~~ 477 (487)
.+.++|+ ++++ |.+
T Consensus 140 ~~~al~~~~~~~~v~v 155 (304)
T PRK07340 140 HLEAFAAGLPVRRVWV 155 (304)
T ss_pred HHHHHHHhCCCCEEEE
Confidence 9999995 6654 555
No 47
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.20 E-value=5.1 Score=42.72 Aligned_cols=30 Identities=37% Similarity=0.426 Sum_probs=28.2
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.|++||++|=+|+++|..|+++|.+|+.
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~ 239 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVC 239 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEE
Confidence 467999999999999999999999999988
No 48
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=70.69 E-value=9.1 Score=34.27 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=31.7
Q ss_pred CCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccC-cEEEe
Q 011375 432 GNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKR-VRVLK 477 (487)
Q Consensus 432 g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~-~~v~~ 477 (487)
|-.+..|.--..+...-+.|.++|. |.+|+++|.+|++.| .+|.+
T Consensus 3 ~~g~~~a~~~~~~~~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v 48 (155)
T cd01065 3 GLGFVRALEEAGIELKGKKVLILGA-GGAARAVAYALAELGAAKIVI 48 (155)
T ss_pred HHHHHHHHHhhCCCCCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEE
Confidence 3334444333333345578999998 899999999999986 67777
No 49
>PRK05855 short chain dehydrogenase; Validated
Probab=70.65 E-value=6.1 Score=42.69 Aligned_cols=30 Identities=40% Similarity=0.493 Sum_probs=27.9
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.+++||++|=+|+++|..|.++|.+|.+
T Consensus 315 ~~~~lv~G~s~giG~~~a~~l~~~G~~v~~ 344 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETALAFAREGAEVVA 344 (582)
T ss_pred CCEEEEECCcCHHHHHHHHHHHHCCCEEEE
Confidence 356899999999999999999999999988
No 50
>PRK08324 short chain dehydrogenase; Validated
Probab=70.06 E-value=5.4 Score=45.40 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=27.8
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|-|++||++|-+|+++|..|.++|.+|.+
T Consensus 423 k~vLVTGasggIG~~la~~L~~~Ga~Vvl 451 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAEGACVVL 451 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcCEEEE
Confidence 68999999999999999999999999988
No 51
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=70.00 E-value=14 Score=37.74 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHhhcCCeEEEecccccccccccCceeeeecCCCCceEEecCCchhhH---HhhhcCCC--ccceEEEeC
Q 011375 381 INKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAA---VILNELPK--DVKEVFLTG 455 (487)
Q Consensus 381 in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p~l~~rvv~g~~l~~a---~v~~~ip~--~~~~v~l~g 455 (487)
.|..+++ .|+++|++|..+.-.+ .|-+-+..+.+-. ..++..+. .-+.|.+.|
T Consensus 101 ~~~~l~~---~a~~~gi~v~~~~~~~-------------------~va~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG 158 (287)
T TIGR02853 101 SNPYLEQ---LAADAGVKLIELFERD-------------------DVAIYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLG 158 (287)
T ss_pred CCHHHHH---HHHHCCCeEEEEEecc-------------------ceEEEccHhHHHHHHHHHHHhcCCCCCCCEEEEEc
Confidence 4566665 6888999999776533 1112111122211 22333332 236899999
Q ss_pred CcchHHHHHHHHhhccCcEEEe
Q 011375 456 ATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 456 ~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
. |.+|+++|..|...|.+|.+
T Consensus 159 ~-G~iG~avA~~L~~~G~~V~v 179 (287)
T TIGR02853 159 F-GRTGMTIARTFSALGARVFV 179 (287)
T ss_pred C-hHHHHHHHHHHHHCCCEEEE
Confidence 8 66999999999999999998
No 52
>PRK06141 ornithine cyclodeaminase; Validated
Probab=69.54 E-value=19 Score=37.08 Aligned_cols=84 Identities=26% Similarity=0.356 Sum_probs=57.8
Q ss_pred hhcCCeEEEeccccccccccc-Cceeee-ecCCCCceEEecCCchhh-------HHhhhcC-CCccceEEEeCCcchHHH
Q 011375 393 DRLGVKVLSLAALNKNESLNG-GGTLFV-DKHPNLKVRVVHGNTCTA-------AVILNEL-PKDVKEVFLTGATSKLGR 462 (487)
Q Consensus 393 ~~~g~kv~sl~~ln~~~~ln~-~g~l~~-~~~p~l~~rvv~g~~l~~-------a~v~~~i-p~~~~~v~l~g~~~k~~~ 462 (487)
+-.|+|+++.--=|....|-. .|.+.+ +..-..-.=++||+.||+ |+..+-+ +++.+.|.+.| +|..|+
T Consensus 60 ~~~g~K~~~~~p~N~~~glp~~~g~v~l~d~~tG~p~ai~d~~~lT~~RTaa~sala~~~La~~~~~~v~iiG-~G~~a~ 138 (314)
T PRK06141 60 RYIGVKAVTVFPGNPARGLPGLHSTYLLFDGRTGEPLALVDGTELTARRTAAASALAASYLARKDASRLLVVG-TGRLAS 138 (314)
T ss_pred CeeEEEEEeecCCCCcCCCCceEEEEEEEECCCCCEEEEEcCcchhcchhHHHHHHHHHHhCCCCCceEEEEC-CcHHHH
Confidence 346999999766665444422 355555 333455666889999975 2333334 67899999999 599999
Q ss_pred HHHHHhhc-cC-cEEEe
Q 011375 463 AIALYLCR-KR-VRVLK 477 (487)
Q Consensus 463 a~a~~lc~-~~-~~v~~ 477 (487)
+++.++|. ++ -+|.+
T Consensus 139 ~~~~al~~~~~~~~V~V 155 (314)
T PRK06141 139 LLALAHASVRPIKQVRV 155 (314)
T ss_pred HHHHHHHhcCCCCEEEE
Confidence 99998885 55 55777
No 53
>PRK08727 hypothetical protein; Validated
Probab=68.12 E-value=8 Score=38.02 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=27.7
Q ss_pred ceEEEeCCc--ch--HHHHHHHHhhccCcEEEe-chhh
Q 011375 449 KEVFLTGAT--SK--LGRAIALYLCRKRVRVLK-DSRK 481 (487)
Q Consensus 449 ~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~-~~~~ 481 (487)
+-+++.|.+ || +.+|+|.++|++|.+|.. +-++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 459999999 88 899999999999999877 4433
No 54
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=67.54 E-value=27 Score=31.83 Aligned_cols=99 Identities=21% Similarity=0.232 Sum_probs=61.1
Q ss_pred cchhhhhHHHHHHHHHHHhhcCCeEEEeccccc---------------ccccccCceeeeec-CCCCceEEec-------
Q 011375 375 PFAQTGINKQIEDAILRADRLGVKVLSLAALNK---------------NESLNGGGTLFVDK-HPNLKVRVVH------- 431 (487)
Q Consensus 375 ~~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~---------------~~~ln~~g~l~~~~-~p~l~~rvv~------- 431 (487)
+.+.+.+-+-|.+.+..|.+.|+.|+----.++ .-.....|.-++.. .|...-.|++
T Consensus 19 ~~~~~~~i~~i~~l~~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~~~~vi~K~~~saf 98 (174)
T PF00857_consen 19 PPNAEAIIPNINRLLDAARAAGVPVIHTRDIHDSPHWSGPFEPKPWPPHCIPGSPGAELVPELAPQPGDPVIEKNRYSAF 98 (174)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTEEEEEEEESBSTTTTTTSGGHSCHTSCSBTTSGGGSBHGGGHCHTTSEEEEESSSSTT
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCCeEEEEeeecccccccccccccccccccCCCCccceeeEeecccccceEEeeccccc
Confidence 445556666777788888999999988777666 11111222222221 1222333332
Q ss_pred -CCchhhHHhhhcCCCccceEEEeCCc-chHHHHHHHHhhccCcEEEe
Q 011375 432 -GNTCTAAVILNELPKDVKEVFLTGAT-SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 432 -g~~l~~a~v~~~ip~~~~~v~l~g~~-~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+.| ...|++ +++++|.++|-. +=-=.+.|..+.++|++|.+
T Consensus 99 ~~t~L--~~~L~~--~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v 142 (174)
T PF00857_consen 99 FGTDL--DEILRK--RGIDTVILCGVATDVCVLATARDAFDRGYRVIV 142 (174)
T ss_dssp TTSSH--HHHHHH--TTESEEEEEEESTTTHHHHHHHHHHHTT-EEEE
T ss_pred ccccc--cccccc--cccceEEEcccccCcEEehhHHHHHHCCCEEEE
Confidence 2222 233555 688999999988 44448999999999999998
No 55
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=67.35 E-value=50 Score=29.72 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHHhhcCCeEEEeccccccccc-------------ccCceeeeecC-CCCceEEecCCchh------hH
Q 011375 379 TGINKQIEDAILRADRLGVKVLSLAALNKNESL-------------NGGGTLFVDKH-PNLKVRVVHGNTCT------AA 438 (487)
Q Consensus 379 ~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~l-------------n~~g~l~~~~~-p~l~~rvv~g~~l~------~a 438 (487)
+.+=+-|.+.+..|.+.|..|+=.=-..+++.. +..|.-++..- |.-.-.+++-++-- -+
T Consensus 23 ~~~~~~i~~l~~~ar~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~l~~~~~~~~i~K~~~saf~~t~l~ 102 (161)
T cd00431 23 DELVPNINRLLAAARAAGIPVIFTRDWHPPDDPEFAELLWPPHCVKGTEGAELVPELAPLPDDLVIEKTRYSAFYGTDLD 102 (161)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeecCCCcccccccCcccccCCCchhhcchhhCCCCCCEEEecCCcCCccCCCHH
Confidence 444444555666788899998865444443321 12233233221 22122334322211 12
Q ss_pred HhhhcCCCccceEEEeCCc-chHHHHHHHHhhccCcEEEe
Q 011375 439 VILNELPKDVKEVFLTGAT-SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 439 ~v~~~ip~~~~~v~l~g~~-~k~~~a~a~~lc~~~~~v~~ 477 (487)
.+|.+. +.++|+|+|-. +=--.+.|+.+.++|.+|.+
T Consensus 103 ~~L~~~--~i~~vil~G~~t~~CV~~T~~~a~~~G~~v~v 140 (161)
T cd00431 103 ELLRER--GIDTLVVCGIATDICVLATARDALDLGYRVIV 140 (161)
T ss_pred HHHHHC--CCCEEEEEecCcChhHHHHHHHHHHCCCEEEE
Confidence 334333 88999999988 66668899999999999999
No 56
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=66.90 E-value=6.5 Score=37.25 Aligned_cols=30 Identities=37% Similarity=0.305 Sum_probs=23.4
Q ss_pred cceEEEeCCc--ch--HHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGAT--SK--LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~ 477 (487)
-+-+++.|.+ || ++.|||..+|++|.+|..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f 80 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLF 80 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeE
Confidence 3568999988 66 899999999999999998
No 57
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=66.39 E-value=6.3 Score=42.22 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=54.8
Q ss_pred eeeEEeeccCccccccchhhhhHHHHHHHHHHHhhcCCeEEEecccccccccccCceeeeecCCCCceEEecCCchhhHH
Q 011375 360 HQTWAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAV 439 (487)
Q Consensus 360 ~~~w~~pr~~~~y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p~l~~rvv~g~~l~~a~ 439 (487)
...-++||-+-. ++ -|..-.+-+..-.+.|+.|+.=. ...-+-...| ..|-|+.. .+..++
T Consensus 113 ~plviaPamn~~---m~----~~p~~~~Nl~~L~~~G~~vv~P~--~g~~ac~~~g---~g~~~~~~-------~i~~~v 173 (390)
T TIGR00521 113 APIILAPAMNEN---MY----NNPAVQENIKRLKDDGYIFIEPD--SGLLACGDEG---KGRLAEPE-------TIVKAA 173 (390)
T ss_pred CCEEEEeCCChh---hc----CCHHHHHHHHHHHHCCcEEECCC--Cccccccccc---CCCCCCHH-------HHHHHH
Confidence 366777876542 11 14444555555566799887532 1111112222 12334331 222222
Q ss_pred hhhcCC----CccceEEEeCC---------------c-chHHHHHHHHhhccCcEEEe
Q 011375 440 ILNELP----KDVKEVFLTGA---------------T-SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 440 v~~~ip----~~~~~v~l~g~---------------~-~k~~~a~a~~lc~~~~~v~~ 477 (487)
.+.+. -.-+.|+.||. + ||+|+|||.+|.++|.+|..
T Consensus 174 -~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~ 230 (390)
T TIGR00521 174 -EREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTL 230 (390)
T ss_pred -HHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEE
Confidence 22221 23467888887 3 79999999999999999987
No 58
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=65.97 E-value=7 Score=41.37 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=34.0
Q ss_pred hhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 441 LNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 441 ~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
++.++++.+.|...|.+|.+|+.+|.+|.++|..|..
T Consensus 91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~ 127 (374)
T PRK11199 91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRI 127 (374)
T ss_pred ccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEE
Confidence 4677778889999999999999999999999999988
No 59
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=65.36 E-value=6.2 Score=44.56 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=26.8
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
...|++||++|-||++++.+|+++|.+|..
T Consensus 380 ~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~ 409 (668)
T PLN02260 380 SLKFLIYGRTGWIGGLLGKLCEKQGIAYEY 409 (668)
T ss_pred CceEEEECCCchHHHHHHHHHHhCCCeEEe
Confidence 346999999999999999999999999843
No 60
>PRK05642 DNA replication initiation factor; Validated
Probab=64.76 E-value=9.6 Score=37.51 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=29.2
Q ss_pred ceEEEeCCc--ch--HHHHHHHHhhccCcEEEe-chhhhh
Q 011375 449 KEVFLTGAT--SK--LGRAIALYLCRKRVRVLK-DSRKFR 483 (487)
Q Consensus 449 ~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~-~~~~~~ 483 (487)
..++|.|.+ || +.+|+|.+++++|.+|+. +.+++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL 85 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence 468999988 78 899999999999999988 666553
No 61
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=64.22 E-value=14 Score=34.97 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=33.6
Q ss_pred hhhHHhhhcCCC--ccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 435 CTAAVILNELPK--DVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 435 l~~a~v~~~ip~--~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.++.-.+.+++. +-+.|++.|++.=+|..+|.+|+++|.+|.+
T Consensus 29 ~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v 73 (168)
T cd01080 29 AGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTV 73 (168)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEE
Confidence 344445666764 5589999999544799999999999999888
No 62
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=64.14 E-value=6.5 Score=44.52 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=28.0
Q ss_pred ccceEEEeCCcchHHHHHHHHhhcc-CcEEEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRK-RVRVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~-~~~v~~ 477 (487)
..+.|++||+||=+|+.++.+|.++ |.+|..
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~ 345 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYG 345 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCcEEEE
Confidence 4678999999999999999999985 799987
No 63
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=63.33 E-value=29 Score=32.91 Aligned_cols=59 Identities=22% Similarity=0.205 Sum_probs=39.4
Q ss_pred eeecCCCCceEEecCCchhhHHh-----------hhcCC--CccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 418 FVDKHPNLKVRVVHGNTCTAAVI-----------LNELP--KDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 418 ~~~~~p~l~~rvv~g~~l~~a~v-----------~~~ip--~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+.-.++.-+++=++-++..|+. +.++. +.-+.|+.+|+++ +|++++..+...|.+|..
T Consensus 92 ~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~ 163 (271)
T cd05188 92 YVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIV 163 (271)
T ss_pred EEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEE
Confidence 55555555566655544433322 22332 2345799999999 999999888889999887
No 64
>PRK12377 putative replication protein; Provisional
Probab=62.00 E-value=10 Score=38.03 Aligned_cols=38 Identities=29% Similarity=0.329 Sum_probs=30.4
Q ss_pred hhhcCCCccceEEEeCCc--ch--HHHHHHHHhhccCcEEEe
Q 011375 440 ILNELPKDVKEVFLTGAT--SK--LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 440 v~~~ip~~~~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~ 477 (487)
+.++...+..-++|+|.+ || ++.|||..||++|.+|..
T Consensus 93 ~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~ 134 (248)
T PRK12377 93 IADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIV 134 (248)
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 344444445678999987 88 999999999999999986
No 65
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=60.91 E-value=15 Score=34.43 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=32.5
Q ss_pred hHHhhhcC--CCccceEEEeCCc--chHHHHHHHHhhccCcEEEe
Q 011375 437 AAVILNEL--PKDVKEVFLTGAT--SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 437 ~a~v~~~i--p~~~~~v~l~g~~--~k~~~a~a~~lc~~~~~v~~ 477 (487)
|-.+.+.+ +++-+=++|+|.. +=-|.++|.+|+++|++|.+
T Consensus 13 a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 13 AELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 33566777 7777888999988 66889999999999999988
No 66
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=60.85 E-value=25 Score=34.16 Aligned_cols=76 Identities=21% Similarity=0.213 Sum_probs=48.1
Q ss_pred hcCCeEEEecccccccccccCceeeeecCCCCceEEecCCchhhHHh--------------hhcCCCccceEEEeCCcch
Q 011375 394 RLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAVI--------------LNELPKDVKEVFLTGATSK 459 (487)
Q Consensus 394 ~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p~l~~rvv~g~~l~~a~v--------------~~~ip~~~~~v~l~g~~~k 459 (487)
+.|-+|++++- .++-.-|+.-.++..+++=++.+...|+. ...+.+ -+.|+++|+++=
T Consensus 80 ~~G~~V~~~~~-------~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~vli~g~~~~ 151 (323)
T cd08241 80 KVGDRVVALTG-------QGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQP-GETVLVLGAAGG 151 (323)
T ss_pred CCCCEEEEecC-------CceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCC-CCEEEEEcCCch
Confidence 45778887650 11112244444555566655544332221 223333 368999999999
Q ss_pred HHHHHHHHhhccCcEEEe
Q 011375 460 LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 460 ~~~a~a~~lc~~~~~v~~ 477 (487)
+|.+++..+.++|++|..
T Consensus 152 ~g~~~~~~a~~~g~~v~~ 169 (323)
T cd08241 152 VGLAAVQLAKALGARVIA 169 (323)
T ss_pred HHHHHHHHHHHhCCEEEE
Confidence 999999999999999887
No 67
>PRK08181 transposase; Validated
Probab=59.46 E-value=6.5 Score=40.00 Aligned_cols=47 Identities=26% Similarity=0.208 Sum_probs=33.6
Q ss_pred cCCchhhHHhhhcCCCccceEEEeCCc--ch--HHHHHHHHhhccCcEEEe
Q 011375 431 HGNTCTAAVILNELPKDVKEVFLTGAT--SK--LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 431 ~g~~l~~a~v~~~ip~~~~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~ 477 (487)
+-....+-.-.++-.+.-+.|+|+|.+ || ++.|||..+|++|.+|..
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f 139 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLF 139 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceee
Confidence 333333333343333455679999998 88 899999999999999986
No 68
>PRK07952 DNA replication protein DnaC; Validated
Probab=59.16 E-value=17 Score=36.38 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=30.3
Q ss_pred hhcCCCccceEEEeCCc--ch--HHHHHHHHhhccCcEEEe
Q 011375 441 LNELPKDVKEVFLTGAT--SK--LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 441 ~~~ip~~~~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~ 477 (487)
.++..++..-++|.|.+ || ++.|||.+|+++|.+|+.
T Consensus 92 ~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~ 132 (244)
T PRK07952 92 VEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLI 132 (244)
T ss_pred HHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 34445555678999987 88 899999999999999987
No 69
>PRK08939 primosomal protein DnaI; Reviewed
Probab=58.81 E-value=15 Score=38.04 Aligned_cols=31 Identities=39% Similarity=0.359 Sum_probs=27.6
Q ss_pred ccceEEEeCCc--ch--HHHHHHHHhhccCcEEEe
Q 011375 447 DVKEVFLTGAT--SK--LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~ 477 (487)
..+-++|.|.+ || ++.|||..||++|++|..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~ 189 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTL 189 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 35678999998 88 999999999999999986
No 70
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=58.62 E-value=49 Score=31.25 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=12.8
Q ss_pred hHhHHhhccCCCCCCC
Q 011375 150 YLFIHYHSLHHSSPVP 165 (487)
Q Consensus 150 ~ly~r~Hk~HHss~~p 165 (487)
..|++.|-.||...+.
T Consensus 71 ~~~r~~H~~HH~~~~~ 86 (175)
T cd03510 71 AAYRRSHLKHHRHLGT 86 (175)
T ss_pred HHHHHHHHHHhCccCC
Confidence 5688999999997643
No 71
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=58.02 E-value=34 Score=33.16 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=47.7
Q ss_pred hcCCeEEEecccccccccccCceeeeecCCCCceEEecCCchhhHH-----------h---hhcCCCccceEEEeCCcch
Q 011375 394 RLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAV-----------I---LNELPKDVKEVFLTGATSK 459 (487)
Q Consensus 394 ~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p~l~~rvv~g~~l~~a~-----------v---~~~ip~~~~~v~l~g~~~k 459 (487)
+.|-+|+.++ .+++=.=|+.-.++.-+|+-++.+...|+ - ...++++ +.|++.|+++=
T Consensus 77 ~~G~~V~~~~-------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g-~~vlI~g~~g~ 148 (320)
T cd05286 77 KVGDRVAYAG-------PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPG-DTVLVHAAAGG 148 (320)
T ss_pred CCCCEEEEec-------CCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCC-CEEEEEcCCch
Confidence 4456666553 12222335555555666665554543222 1 2334444 67999999988
Q ss_pred HHHHHHHHhhccCcEEEe
Q 011375 460 LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 460 ~~~a~a~~lc~~~~~v~~ 477 (487)
+|.+++..+..+|.+|.+
T Consensus 149 ~g~~~~~~a~~~g~~v~~ 166 (320)
T cd05286 149 VGLLLTQWAKALGATVIG 166 (320)
T ss_pred HHHHHHHHHHHcCCEEEE
Confidence 999999988899999988
No 72
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=57.46 E-value=1.3e+02 Score=31.00 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=15.5
Q ss_pred cccccccCCchhhhhhhcCC
Q 011375 233 PFLRYLLYTPTYHSLHHTEK 252 (487)
Q Consensus 233 p~l~~li~tp~~H~lHH~~~ 252 (487)
++++.+...-.+|..||-..
T Consensus 221 ~~~~~~~~n~~yH~~HH~~p 240 (289)
T cd03508 221 GPLNLLTFNVGYHNEHHDFP 240 (289)
T ss_pred HHHHHHhhccChHHHhcCCC
Confidence 45667777888999999864
No 73
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=57.31 E-value=13 Score=41.34 Aligned_cols=29 Identities=31% Similarity=0.289 Sum_probs=26.7
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-|.|+++|+ |-.|||||.+|.++|.+|.+
T Consensus 379 ~k~vlIlGa-GGagrAia~~L~~~G~~V~i 407 (529)
T PLN02520 379 GKLFVVIGA-GGAGKALAYGAKEKGARVVI 407 (529)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCEEEE
Confidence 478999999 69999999999999999888
No 74
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=56.64 E-value=12 Score=39.13 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=17.6
Q ss_pred hhHHHhchhhHHHHHHHHHHHh
Q 011375 85 IDNEWNWDNFILLQAAIASMGY 106 (487)
Q Consensus 85 i~rE~~~~n~ills~li~~~~~ 106 (487)
.++|+.|.|.++.+.+.+...+
T Consensus 34 ~~~~~~w~nv~~~~~l~~~a~y 55 (321)
T KOG1600|consen 34 WKRELVWRNVVLFSALHIVALY 55 (321)
T ss_pred hhcchhhhhhHHHHHHHHHHHH
Confidence 6899999999998877666544
No 75
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=56.42 E-value=17 Score=36.85 Aligned_cols=47 Identities=17% Similarity=0.053 Sum_probs=32.1
Q ss_pred ecCCchhhHHhhhcC--CCccceEEEeCCcchHHHHHHHHhhccCc-EEEe
Q 011375 430 VHGNTCTAAVILNEL--PKDVKEVFLTGATSKLGRAIALYLCRKRV-RVLK 477 (487)
Q Consensus 430 v~g~~l~~a~v~~~i--p~~~~~v~l~g~~~k~~~a~a~~lc~~~~-~v~~ 477 (487)
-||..+..+.--+.+ +..-+.|++.|+ |-.|||||.+|.+.|+ +|.+
T Consensus 105 TD~~G~~~~l~~~~~~~~~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I 154 (282)
T TIGR01809 105 TDWDGIAGALANIGKFEPLAGFRGLVIGA-GGTSRAAVYALASLGVTDITV 154 (282)
T ss_pred CCHHHHHHHHHhhCCccccCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEE
Confidence 355555555432332 123468999998 6789999999999998 4666
No 76
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=56.25 E-value=16 Score=38.62 Aligned_cols=86 Identities=27% Similarity=0.247 Sum_probs=50.9
Q ss_pred hhhHHHHHHHHHHHhhcCCeEEEecccccccccccCceeee-----ecCCCCceEEecCC-chhhHHh--hhcCCC-ccc
Q 011375 379 TGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFV-----DKHPNLKVRVVHGN-TCTAAVI--LNELPK-DVK 449 (487)
Q Consensus 379 ~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~-----~~~p~l~~rvv~g~-~l~~a~v--~~~ip~-~~~ 449 (487)
.-|=.|+.+|...|.+.|.- +..||. ||- .|.=.-.+++=.|. |+..|++ ...++. +-+
T Consensus 108 ~QIlGQVK~Ay~~A~~~g~~---------g~~L~~---lf~~A~~~aKrVRteT~I~~~~vSv~s~av~~~~~~~~l~~k 175 (338)
T PRK00676 108 TEIQGQVKRAYLKAARERKL---------PFALHF---LFQKALKEGKVFRSKGGAPYAEVTIESVVQQELRRRQKSKKA 175 (338)
T ss_pred HHHHHHHHHHHHHHHHcCCc---------hHHHHH---HHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHhCCccCC
Confidence 44667788888888887752 111221 221 22211123332232 3333222 334432 568
Q ss_pred eEEEeCCcchHHHHHHHHhhccCcE-EEe
Q 011375 450 EVFLTGATSKLGRAIALYLCRKRVR-VLK 477 (487)
Q Consensus 450 ~v~l~g~~~k~~~a~a~~lc~~~~~-v~~ 477 (487)
.|++.|+ |++|+.+|.+|.++|++ |.+
T Consensus 176 ~vLvIGa-Gem~~l~a~~L~~~g~~~i~v 203 (338)
T PRK00676 176 SLLFIGY-SEINRKVAYYLQRQGYSRITF 203 (338)
T ss_pred EEEEEcc-cHHHHHHHHHHHHcCCCEEEE
Confidence 9999999 99999999999999975 555
No 77
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=55.64 E-value=42 Score=28.44 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=44.7
Q ss_pred ccceEEeeeecCCcceeeEEeeccCccccccchhhhhHHHHHHHHHHHhhcCCeEEEecccccc
Q 011375 345 SKTFLISFYWLRGRLHQTWAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKN 408 (487)
Q Consensus 345 ~~~f~~~~~~~~~~~~~~w~~pr~~~~y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~ 408 (487)
|+..+.+.+.+.-...=--+.|+|.-+ .-+.+.+.+.+-+++++..|+++++|.|.+=++.-+
T Consensus 43 G~~~~t~~~~l~~~~Iih~v~P~~~~~-~~~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G 105 (118)
T PF01661_consen 43 GEVIVTPGGNLPCKYIIHAVGPTYNSP-GEKNSYEALESAYRNALQKAEENGIKSIAFPAIGTG 105 (118)
T ss_dssp TSEEEEEETTSSSSEEEEEEEEETTTS-TSTTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSS
T ss_pred CCeeeecCCCccccceEEEecceeccc-cccccHHHHHHHHHHHHHHHHHcCCcccccCcccCC
Confidence 445566665554222233355887654 566788899999999999999999999998776543
No 78
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=55.51 E-value=15 Score=37.62 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=31.3
Q ss_pred cCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCc-EEEe
Q 011375 431 HGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRV-RVLK 477 (487)
Q Consensus 431 ~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~-~v~~ 477 (487)
||.....+.--..++..-|.|++.|+.|- |||||.+|+++|+ +|.+
T Consensus 107 D~~Gf~~~l~~~~~~~~~k~vlvlGaGGa-arAi~~~l~~~g~~~i~i 153 (288)
T PRK12749 107 DGTGHIRAIKESGFDIKGKTMVLLGAGGA-STAIGAQGAIEGLKEIKL 153 (288)
T ss_pred CHHHHHHHHHhcCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEE
Confidence 44444444432333333478999999876 8999999999998 5656
No 79
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=55.50 E-value=17 Score=37.00 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=25.5
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCc-EEEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRV-RVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~-~v~~ 477 (487)
.-+.|.+.|+.+ .|||+|.+|++.|+ +|.+
T Consensus 126 ~~k~vlIlGaGG-aaraia~aL~~~G~~~I~I 156 (284)
T PRK12549 126 SLERVVQLGAGG-AGAAVAHALLTLGVERLTI 156 (284)
T ss_pred cCCEEEEECCcH-HHHHHHHHHHHcCCCEEEE
Confidence 347899999865 99999999999998 6776
No 80
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.47 E-value=22 Score=36.48 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=31.2
Q ss_pred cCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 443 ELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 443 ~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.++-.-|.|.+.|+++=+||+||..|.++|.+|.+
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv 188 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTI 188 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEE
Confidence 34556679999999999999999999999999988
No 81
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=54.26 E-value=46 Score=31.54 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=26.6
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.|++.|+++-+|.+++..+..+|++|.+
T Consensus 110 ~~vlv~g~~g~~g~~~~~~a~~~g~~v~~ 138 (293)
T cd05195 110 ESVLIHAAAGGVGQAAIQLAQHLGAEVFA 138 (293)
T ss_pred CEEEEecCCCHHHHHHHHHHHHcCCEEEE
Confidence 57888999999999999999999999988
No 82
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=54.20 E-value=44 Score=33.25 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=27.1
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.|++.|+++-+|.+++..+.++|++|.+
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~G~~vi~ 175 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLLGARVVG 175 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHcCCEEEE
Confidence 68999999999999999999999999987
No 83
>PRK11440 putative hydrolase; Provisional
Probab=53.95 E-value=1e+02 Score=28.95 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=27.9
Q ss_pred CccceEEEeCCc-chHHHHHHHHhhccCcEEEe
Q 011375 446 KDVKEVFLTGAT-SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 446 ~~~~~v~l~g~~-~k~~~a~a~~lc~~~~~v~~ 477 (487)
.++++++++|-. +=-=.+.|..+.++|.+|.+
T Consensus 119 ~gi~~lii~Gv~T~~CV~~Ta~~A~~~gy~v~v 151 (188)
T PRK11440 119 RGIDTIVLCGISTNIGVESTARNAWELGFNLVI 151 (188)
T ss_pred CCCCEEEEeeechhHHHHHHHHHHHHCCCEEEE
Confidence 488999999998 55558888999999999999
No 84
>PRK06835 DNA replication protein DnaC; Validated
Probab=53.42 E-value=17 Score=38.15 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=28.0
Q ss_pred CccceEEEeCCc--ch--HHHHHHHHhhccCcEEEe
Q 011375 446 KDVKEVFLTGAT--SK--LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 446 ~~~~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~ 477 (487)
++-+-++|.|.+ || ++.|||..|+++|.+|+.
T Consensus 181 ~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y 216 (329)
T PRK06835 181 KNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIY 216 (329)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 344779999988 88 899999999999999987
No 85
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=52.74 E-value=36 Score=27.97 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=26.0
Q ss_pred CccceEEEeCCcchHHHHHHHHhhcc-CcEEEe
Q 011375 446 KDVKEVFLTGATSKLGRAIALYLCRK-RVRVLK 477 (487)
Q Consensus 446 ~~~~~v~l~g~~~k~~~a~a~~lc~~-~~~v~~ 477 (487)
.+-+.+.+.|. +.+|+++|.+|++. +-+|.+
T Consensus 21 ~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v 52 (86)
T cd05191 21 LKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVL 52 (86)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEE
Confidence 44578999999 99999999999998 566665
No 86
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=52.05 E-value=63 Score=31.08 Aligned_cols=98 Identities=14% Similarity=0.112 Sum_probs=44.8
Q ss_pred hHhHHhhccCCCCCCCCcccccccChHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcccceeecCCCcc
Q 011375 150 YLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWF 229 (487)
Q Consensus 150 ~ly~r~Hk~HHss~~p~~~ta~~~hplE~ll~~~~~~iPll~~~llG~~s~~~i~~y~~~~~~~~~~~Hsn~e~~P~~~~ 229 (487)
..+-+.|+.||+..+.+ ..-.+|.+.+..+-+..+..+.-. ....-+-..+..+....+--+++. ....
T Consensus 55 ~~W~~~HR~HH~~sDt~---~DPhs~~~gf~~~h~gW~~~~~r~------~~~~h~t~~VNs~~H~~G~r~~~~-~~~s- 123 (178)
T cd03505 55 LWWVADHRLHHRYSDTD---GDPHSPKRGFWFSHVGWLGGLLRI------VLVLHATWLVNSLAHMWGYRPYDT-RDTS- 123 (178)
T ss_pred HHHHHHHHHhhcccCCC---CCCCCcccCcHHHHHhhHHHHHHH------HHHHHHHHHHHHHHHhcCCCCCCC-CCCc-
Confidence 45568999999988753 233333343333222211100000 000001111233333344444543 2221
Q ss_pred ccccccccccCCchhhhhhhcC-CCCCccc
Q 011375 230 ETFPFLRYLLYTPTYHSLHHTE-KDSNFCL 258 (487)
Q Consensus 230 ~~~p~l~~li~tp~~H~lHH~~-~~~NYG~ 258 (487)
+..+++..+..+-.+|+.||.. .+.+.|.
T Consensus 124 ~n~~~~~llt~GEg~HNnHHafP~~ar~g~ 153 (178)
T cd03505 124 RNNWWVALLTFGEGWHNNHHAFPGDARNGL 153 (178)
T ss_pred hhhHHHHHHHccccccccccCCcchhhhCC
Confidence 1224455445577899999997 3555553
No 87
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=51.45 E-value=61 Score=31.50 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=41.2
Q ss_pred eeecCCCCceEEecCCchhhHHh-----------h---hcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 418 FVDKHPNLKVRVVHGNTCTAAVI-----------L---NELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 418 ~~~~~p~l~~rvv~g~~l~~a~v-----------~---~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+.-.++.-+++-++.+...|+. + ..++++ +.|+++|+++=+|.+++..+.++|.+|.+
T Consensus 102 ~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g-~~vlI~g~~~~~g~~~~~~a~~~g~~v~~ 174 (325)
T cd08253 102 YVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAG-ETVLVHGGSGAVGHAAVQLARWAGARVIA 174 (325)
T ss_pred EEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCC-CEEEEEcCCchHHHHHHHHHHHcCCEEEE
Confidence 55555566666665555433221 1 334443 68999999989999999999999999988
No 88
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=51.24 E-value=18 Score=37.89 Aligned_cols=33 Identities=36% Similarity=0.472 Sum_probs=30.0
Q ss_pred CCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 445 PKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 445 p~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|-+.|-||.||.-|=.|+..|.+|-++|.+|.-
T Consensus 26 ~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~A 58 (322)
T KOG1610|consen 26 SLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFA 58 (322)
T ss_pred ccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEE
Confidence 345677999999999999999999999999987
No 89
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=49.92 E-value=46 Score=32.27 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=27.5
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.+.|+++|+++=+|++++..+..+|.+|.+
T Consensus 140 ~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~ 169 (323)
T cd05276 140 GETVLIHGGASGVGTAAIQLAKALGARVIA 169 (323)
T ss_pred CCEEEEEcCcChHHHHHHHHHHHcCCEEEE
Confidence 368999999999999999999999999887
No 90
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=49.47 E-value=18 Score=37.82 Aligned_cols=32 Identities=28% Similarity=0.291 Sum_probs=27.4
Q ss_pred CccceEEEeCCcchHHHHHHHHhh--ccCcEEEe
Q 011375 446 KDVKEVFLTGATSKLGRAIALYLC--RKRVRVLK 477 (487)
Q Consensus 446 ~~~~~v~l~g~~~k~~~a~a~~lc--~~~~~v~~ 477 (487)
-+.++|++++|+||-+++.|-.|. +++++|+=
T Consensus 134 ~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vg 167 (314)
T PF11017_consen 134 FGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVG 167 (314)
T ss_pred CCccEEEEeccchHHHHHHHHHhhccCCCceEEE
Confidence 467899999999999999999998 66777764
No 91
>PRK08291 ectoine utilization protein EutC; Validated
Probab=49.35 E-value=64 Score=33.45 Aligned_cols=83 Identities=18% Similarity=0.089 Sum_probs=50.4
Q ss_pred hhcCCeEEEecccccccccccC-ceeeeecCCCC-ceEE--ecCCchhhH-----Hh---hhcCCCccceEEEeCCcchH
Q 011375 393 DRLGVKVLSLAALNKNESLNGG-GTLFVDKHPNL-KVRV--VHGNTCTAA-----VI---LNELPKDVKEVFLTGATSKL 460 (487)
Q Consensus 393 ~~~g~kv~sl~~ln~~~~ln~~-g~l~~~~~p~l-~~rv--v~g~~l~~a-----~v---~~~ip~~~~~v~l~g~~~k~ 460 (487)
+..|+|+++----|....|-.- |.+.+ -.|+. .+.. .||+.||+- .. ..--+++.+.|.+.|+ |..
T Consensus 66 ~~~g~K~~~~~~~N~~~glp~~~g~i~l-~d~~tG~~~ai~~d~~~lt~~rT~a~~~~a~~~la~~~~~~v~IiGa-G~~ 143 (330)
T PRK08291 66 DSFAIKVSPGFFDNPKLGLPSLNGLMVV-LSARTGLVEALLLDNGYLTDVRTAAAGAVAARHLAREDASRAAVIGA-GEQ 143 (330)
T ss_pred CeeEEEeccCCCCccccCCCcceEEEEE-EeCCCCceEEEEcCCchHHHHHHHHHHHHHHHHhCCCCCCEEEEECC-CHH
Confidence 3478888875544554443332 44444 33443 3442 389888742 11 1112678889999998 577
Q ss_pred HHHHHHHhhc-cCc-EEEe
Q 011375 461 GRAIALYLCR-KRV-RVLK 477 (487)
Q Consensus 461 ~~a~a~~lc~-~~~-~v~~ 477 (487)
|++++.+|++ +++ +|.+
T Consensus 144 a~~~~~al~~~~~~~~V~v 162 (330)
T PRK08291 144 ARLQLEALTLVRPIREVRV 162 (330)
T ss_pred HHHHHHHHHhcCCCCEEEE
Confidence 9999999994 665 4555
No 92
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=48.44 E-value=25 Score=33.96 Aligned_cols=29 Identities=24% Similarity=0.293 Sum_probs=26.5
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-|.|.+.|.. ++|+++|..|.+.|.+|+.
T Consensus 28 gk~v~I~G~G-~vG~~~A~~L~~~G~~Vvv 56 (200)
T cd01075 28 GKTVAVQGLG-KVGYKLAEHLLEEGAKLIV 56 (200)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHCCCEEEE
Confidence 3679999985 9999999999999999998
No 93
>PTZ00381 aldehyde dehydrogenase family protein; Provisional
Probab=47.89 E-value=34 Score=37.67 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=34.8
Q ss_pred ceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 426 KVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 426 ~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.||+|+.-++...++ -| ++-|++||++ ++|+.|+.+..++..+|.+
T Consensus 167 ~v~vv~g~~~~~~~l~~-~~--~d~i~FTGS~-~vG~~V~~~aa~~l~pv~l 214 (493)
T PTZ00381 167 YVRVIEGGVEVTTELLK-EP--FDHIFFTGSP-RVGKLVMQAAAENLTPCTL 214 (493)
T ss_pred EEEEecCCHHHHHHHHh-CC--CCEEEEECCH-HHHHHHHHHHHhcCCcEEE
Confidence 35677775444444554 34 7889999976 5999999888888888865
No 94
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=47.86 E-value=31 Score=34.34 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=30.1
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCcEEEe---chhhhh
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRVRVLK---DSRKFR 483 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~---~~~~~~ 483 (487)
+-+.|++.|+++=+|.+++..+.++|++|.. ++++.+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~ 185 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAAD 185 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHH
Confidence 3468999999988999999999999999887 444443
No 95
>PLN02174 aldehyde dehydrogenase family 3 member H1
Probab=47.09 E-value=38 Score=37.35 Aligned_cols=48 Identities=29% Similarity=0.504 Sum_probs=35.5
Q ss_pred ceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 426 KVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 426 ~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.||+|..-+.+..+. ++++.|++||++ ++|+.|+....++..+|.+
T Consensus 170 vv~vv~G~~~~~~~l~~---~~vd~V~FTGS~-~~G~~I~~~aa~~l~~v~L 217 (484)
T PLN02174 170 AVRVVEGAVTETTALLE---QKWDKIFYTGSS-KIGRVIMAAAAKHLTPVVL 217 (484)
T ss_pred EEEEEECChHHHHHHhc---ccCCEEEEECCh-HHHHHHHHHHHhcCCcEEE
Confidence 46788875444444443 578999999987 6888898887777788877
No 96
>PRK06526 transposase; Provisional
Probab=47.08 E-value=16 Score=36.65 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=26.3
Q ss_pred cceEEEeCCc--ch--HHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGAT--SK--LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~ 477 (487)
-..|+++|.+ || ++.||+..+|++|.+|..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 3468999988 77 899999999999999987
No 97
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=46.54 E-value=71 Score=33.09 Aligned_cols=93 Identities=14% Similarity=0.142 Sum_probs=66.9
Q ss_pred HHhhcCCeEEEec----cccccccc-------ccCceeeeecCCC----------CceEEecCCc--------hh-hHHh
Q 011375 391 RADRLGVKVLSLA----ALNKNESL-------NGGGTLFVDKHPN----------LKVRVVHGNT--------CT-AAVI 440 (487)
Q Consensus 391 ~a~~~g~kv~sl~----~ln~~~~l-------n~~g~l~~~~~p~----------l~~rvv~g~~--------l~-~a~v 440 (487)
.|.+.|.+|+.++ .++|+|++ ++++-+.|-|||+ .++=|+++-+ |+ ...+
T Consensus 64 A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti 143 (304)
T PRK00779 64 GMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHETLEELAEYSTVPVINGLTDLSHPCQILADLLTI 143 (304)
T ss_pred HHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCChhHHHHHHHhCCCCEEeCCCCCCChHHHHHHHHHH
Confidence 4678999999985 35677764 5667788999987 3778888754 11 1233
Q ss_pred hhcCCC-ccceEEEeCCcchHHHHHHHHhhccCcEEEe-chhhhh
Q 011375 441 LNELPK-DVKEVFLTGATSKLGRAIALYLCRKRVRVLK-DSRKFR 483 (487)
Q Consensus 441 ~~~ip~-~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~-~~~~~~ 483 (487)
..+... +=..|-..|..+.+.|..+..|.+-|++|.+ +.+.++
T Consensus 144 ~e~~g~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~ 188 (304)
T PRK00779 144 YEHRGSLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYE 188 (304)
T ss_pred HHHhCCcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccC
Confidence 344432 2236888999989999999999999999999 655543
No 98
>PRK08116 hypothetical protein; Validated
Probab=46.41 E-value=25 Score=35.58 Aligned_cols=28 Identities=36% Similarity=0.368 Sum_probs=25.3
Q ss_pred eEEEeCCc--ch--HHHHHHHHhhccCcEEEe
Q 011375 450 EVFLTGAT--SK--LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 450 ~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~ 477 (487)
-++|.|.+ || ++.|||.+|+++|.+|+.
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~ 147 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIF 147 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 38999988 78 899999999999999987
No 99
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=45.89 E-value=31 Score=34.65 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=27.7
Q ss_pred cceEEEeCCcchHHHHHHHHhhccC-cEEEe---chhhhh
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKR-VRVLK---DSRKFR 483 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~-~~v~~---~~~~~~ 483 (487)
-+.|++.|+++ +|.+++..+.++| .+|.. ++++.+
T Consensus 168 ~~~vlI~g~~~-vg~~~~~~a~~~g~~~v~~~~~~~~~~~ 206 (340)
T cd05284 168 GSTVVVIGVGG-LGHIAVQILRALTPATVIAVDRSEEALK 206 (340)
T ss_pred CCEEEEEcCcH-HHHHHHHHHHHhCCCcEEEEeCCHHHHH
Confidence 46799999777 9999999888888 89876 444443
No 100
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=45.22 E-value=38 Score=36.38 Aligned_cols=47 Identities=26% Similarity=0.451 Sum_probs=33.7
Q ss_pred eEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 427 VRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 427 ~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.+|.|+.-++..+++. +++-|.+||++ ++|++|+....++..+|.+
T Consensus 179 ~~vv~g~~~~~~~l~~~---~vd~V~ftGs~-~~g~~i~~~aa~~~~~~~l 225 (453)
T cd07099 179 LQVVTGDGATGAALIDA---GVDKVAFTGSV-ATGRKVMAAAAERLIPVVL 225 (453)
T ss_pred EEEEeCCchHHHHHhcC---CCCEEEEECCH-HHHHHHHHHHHhcCCeEEE
Confidence 56676655444445543 48889999966 5888898888888888876
No 101
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=45.15 E-value=22 Score=39.99 Aligned_cols=36 Identities=14% Similarity=0.319 Sum_probs=31.1
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe--chhhhh
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK--DSRKFR 483 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~--~~~~~~ 483 (487)
-|.|+.||++|-+|+.+|..+++.|.+.++ +.++|.
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~ 287 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYK 287 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHH
Confidence 467999999999999999999999888777 777664
No 102
>PLN00203 glutamyl-tRNA reductase
Probab=44.95 E-value=44 Score=37.26 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=26.1
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCc-EEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRV-RVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~-~v~~ 477 (487)
-+.|.+.|+ |++|+++|.+|+.+|+ +|.+
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V 295 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMVV 295 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCCCeEEE
Confidence 678999999 9999999999999997 5666
No 103
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=43.91 E-value=1e+02 Score=29.48 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=13.4
Q ss_pred CCcchHhHHhhccCCCCCC
Q 011375 146 HRNKYLFIHYHSLHHSSPV 164 (487)
Q Consensus 146 H~~~~ly~r~Hk~HHss~~ 164 (487)
... ..++.-|..||+.++
T Consensus 46 ~s~-~~w~~~H~~HH~~tn 63 (204)
T cd03506 46 ASA-GWWKNKHNVHHAYTN 63 (204)
T ss_pred CCH-HHHHHHHhhhcCcCC
Confidence 344 677888999998865
No 104
>PRK06893 DNA replication initiation factor; Validated
Probab=43.84 E-value=31 Score=33.68 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=25.1
Q ss_pred ceEEEeCCc--ch--HHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGAT--SK--LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~ 477 (487)
..++|.|.+ || +.+|||..+|++|.+|..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y 72 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIY 72 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 357899998 77 899999999999888866
No 105
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=43.84 E-value=42 Score=33.21 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=26.8
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.|+++|++|-+|++++..+.++|.+|.+
T Consensus 164 ~~vlI~ga~g~vG~~~~~~a~~~g~~v~~ 192 (332)
T cd08259 164 DTVLVTGAGGGVGIHAIQLAKALGARVIA 192 (332)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCeEEE
Confidence 46899999999999999999999999987
No 106
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=43.42 E-value=25 Score=36.82 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=26.8
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCc-EEEe-chhhhh
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRV-RVLK-DSRKFR 483 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~-~v~~-~~~~~~ 483 (487)
+.|++.|.. -+|..+|.+|++.|+ ++.+ +.|..|
T Consensus 25 ~~VlIiG~G-glGs~va~~La~aGvg~i~lvD~D~ve 60 (338)
T PRK12475 25 KHVLIVGAG-ALGAANAEALVRAGIGKLTIADRDYVE 60 (338)
T ss_pred CcEEEECCC-HHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 568999975 599999999999999 5555 555433
No 107
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=43.31 E-value=82 Score=29.89 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=28.6
Q ss_pred cCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 443 ELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 443 ~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+++++ +.|++.|+++-+|.+++..+.++|++|..
T Consensus 101 ~~~~g-~~vlv~g~~~~~g~~~~~~a~~~g~~v~~ 134 (288)
T smart00829 101 RLRPG-ESVLIHAAAGGVGQAAIQLAQHLGAEVFA 134 (288)
T ss_pred CCCCC-CEEEEecCCcHHHHHHHHHHHHcCCEEEE
Confidence 34444 57899999999999999999999999877
No 108
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=43.08 E-value=37 Score=36.50 Aligned_cols=17 Identities=35% Similarity=0.348 Sum_probs=14.1
Q ss_pred hcCCeEEEecccccccc
Q 011375 394 RLGVKVLSLAALNKNES 410 (487)
Q Consensus 394 ~~g~kv~sl~~ln~~~~ 410 (487)
-+||-++|.-+-|..|+
T Consensus 20 ~~~~~~~~~~~~~~~~~ 36 (387)
T TIGR01757 20 CYGVFCLSYDLKNEDKS 36 (387)
T ss_pred ceEEEEEEeecCcchhH
Confidence 46888889899888887
No 109
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=42.88 E-value=32 Score=33.13 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=33.0
Q ss_pred hhHHhhhcCCCc---cceEEEeCCc--ch--HHHHHHHHhhccCcEEEe
Q 011375 436 TAAVILNELPKD---VKEVFLTGAT--SK--LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 436 ~~a~v~~~ip~~---~~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~ 477 (487)
.+...+++.+.+ ..-|+++|.. || +++||+..++++|.++..
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~ 75 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARY 75 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 345566666552 3469999998 88 999999999999988877
No 110
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=42.30 E-value=70 Score=31.35 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=27.6
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.|+++|+++-+|.+++..+..+|.+|..
T Consensus 133 ~~~vli~g~~~~~g~~~~~~a~~~g~~v~~ 162 (305)
T cd08270 133 GRRVLVTGASGGVGRFAVQLAALAGAHVVA 162 (305)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCEEEE
Confidence 578999999999999999999999999877
No 111
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=42.24 E-value=94 Score=32.22 Aligned_cols=84 Identities=19% Similarity=0.104 Sum_probs=53.4
Q ss_pred hhcCCeEEEecccccccccccCceeeeecCCCCc-e-EE-ecCCchhhH-------HhhhcC-CCccceEEEeCCcchHH
Q 011375 393 DRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLK-V-RV-VHGNTCTAA-------VILNEL-PKDVKEVFLTGATSKLG 461 (487)
Q Consensus 393 ~~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p~l~-~-rv-v~g~~l~~a-------~v~~~i-p~~~~~v~l~g~~~k~~ 461 (487)
+..|+|+++-=--|....|-..-.+.+--.|+-. + -+ .||+.||+- +-...+ +++.+.|.+.|+ |..|
T Consensus 63 ~~~g~K~~~~~p~N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~lT~~RTaa~~~laa~~la~~~~~~v~iiGa-G~qA 141 (326)
T TIGR02992 63 DGFAIKVSPGFFDNPKLGLPSLNGMMVLLSSRTGLLQALLLDNGYLTDVRTAAAGAVAARHLAREDSSVVAIFGA-GMQA 141 (326)
T ss_pred CceEEEEecccCCccccCCCceeEEEEEEECCCCCceEEEcCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECC-CHHH
Confidence 4478999885444554444443344444444432 2 33 499888742 222223 678889999997 7899
Q ss_pred HHHHHHhh-ccCcE-EEe
Q 011375 462 RAIALYLC-RKRVR-VLK 477 (487)
Q Consensus 462 ~a~a~~lc-~~~~~-v~~ 477 (487)
|+.+.+|| .++++ |.+
T Consensus 142 ~~~~~al~~~~~i~~v~V 159 (326)
T TIGR02992 142 RLQLEALTLVRDIRSARI 159 (326)
T ss_pred HHHHHHHHHhCCccEEEE
Confidence 99999998 57865 555
No 112
>PLN02434 fatty acid hydroxylase
Probab=42.12 E-value=42 Score=33.81 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcc--hHhHHhhccCCCCC
Q 011375 122 GFIALQILHVAVSEPLYYVLHRHFHRNK--YLFIHYHSLHHSSP 163 (487)
Q Consensus 122 gli~~~ll~~l~~Df~~Yw~HRllH~~~--~ly~r~Hk~HHss~ 163 (487)
++....++..++.|...|..|..--..+ .-.|+.|..||--.
T Consensus 165 ~~~~G~l~gYl~Yd~~Hy~lH~~~p~~~~~r~lkr~H~~HHfk~ 208 (237)
T PLN02434 165 ALFGGGLLGYVMYDCTHYFLHHGQPSTDVLRNLKKYHLNHHFRD 208 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCC
Confidence 3566677777888999999997432221 13689999999644
No 113
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=42.11 E-value=98 Score=36.02 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHhhcCCeEEEecccccccccccCceeeeecCC--------------CCceEEecCCch-hhHHhhhcC
Q 011375 380 GINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHP--------------NLKVRVVHGNTC-TAAVILNEL 444 (487)
Q Consensus 380 ~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p--------------~l~~rvv~g~~l-~~a~v~~~i 444 (487)
.+.+.|++.+.+-.+.|-+|+.+|--|.++.|-==|-+-..--| +.||+++.|+.. ||..|-+++
T Consensus 400 ~~~~~~~~~~~~~~~~G~rvl~vA~~~~e~~l~~~Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l 479 (755)
T TIGR01647 400 EIEEKVEEKVDELASRGYRALGVARTDEEGRWHFLGLLPLFDPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRL 479 (755)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEEEcCCCCcEEEEEeeccCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc
Confidence 34567778888778899999999975432222222332222222 468899999875 666777776
Q ss_pred CCcc-----ceE----------------------EEeCCc--chHHHHHHHHhhccCcEEEe
Q 011375 445 PKDV-----KEV----------------------FLTGAT--SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 445 p~~~-----~~v----------------------~l~g~~--~k~~~a~a~~lc~~~~~v~~ 477 (487)
-=+. +++ .+.+.+ .|+ .|...|-++|..|.|
T Consensus 480 GI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr~~Pe~K~--~iV~~lq~~G~~Vam 539 (755)
T TIGR01647 480 GLGTNIYTADVLLKGDNRDDLPSGELGEMVEDADGFAEVFPEHKY--EIVEILQKRGHLVGM 539 (755)
T ss_pred CCCCCCcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEecCHHHHH--HHHHHHHhcCCEEEE
Confidence 3211 111 233333 665 567778889999988
No 114
>PRK08084 DNA replication initiation factor; Provisional
Probab=42.07 E-value=46 Score=32.70 Aligned_cols=51 Identities=18% Similarity=0.082 Sum_probs=35.8
Q ss_pred eEEecCCchhhHHhhhcCCC-ccceEEEeCCc--ch--HHHHHHHHhhccCcEEEe
Q 011375 427 VRVVHGNTCTAAVILNELPK-DVKEVFLTGAT--SK--LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 427 ~rvv~g~~l~~a~v~~~ip~-~~~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~ 477 (487)
-=++.+|..+.+.+-+-... +...++++|.. || +.+|+|.++|++|.+|..
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y 78 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGY 78 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 34455666655544432211 23578999987 78 899999999999999877
No 115
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=41.85 E-value=46 Score=38.01 Aligned_cols=42 Identities=31% Similarity=0.390 Sum_probs=31.3
Q ss_pred hhcCCCccceEEEeCCc--ch--HHHHHHHHhhc--cCcEEEe-chhhh
Q 011375 441 LNELPKDVKEVFLTGAT--SK--LGRAIALYLCR--KRVRVLK-DSRKF 482 (487)
Q Consensus 441 ~~~ip~~~~~v~l~g~~--~k--~~~a~a~~lc~--~~~~v~~-~~~~~ 482 (487)
.+...+.-+-+||.|.+ || |..|||.++|+ +|.+|+. +.++|
T Consensus 307 ae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef 355 (617)
T PRK14086 307 AEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF 355 (617)
T ss_pred HhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 33434444569999988 88 89999999997 5899987 55554
No 116
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=41.11 E-value=38 Score=37.19 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=32.9
Q ss_pred cCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 431 HGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 431 ~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
||.....|.=-+..+..-+.|.++|+ |-+|+|+|.+|.+.|.+|.+
T Consensus 315 D~~G~~~~l~~~~~~~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i 360 (477)
T PRK09310 315 DGEGLFSLLKQKNIPLNNQHVAIVGA-GGAAKAIATTLARAGAELLI 360 (477)
T ss_pred CHHHHHHHHHhcCCCcCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEE
Confidence 44444444322223334568999996 79999999999999999888
No 117
>PRK06921 hypothetical protein; Provisional
Probab=41.08 E-value=35 Score=34.46 Aligned_cols=31 Identities=39% Similarity=0.304 Sum_probs=27.1
Q ss_pred ccceEEEeCCc--ch--HHHHHHHHhhcc-CcEEEe
Q 011375 447 DVKEVFLTGAT--SK--LGRAIALYLCRK-RVRVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~--~k--~~~a~a~~lc~~-~~~v~~ 477 (487)
..+-++|+|.+ || +..|||..|+++ |+.|+-
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y 151 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLY 151 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEE
Confidence 35679999998 88 899999999998 999876
No 118
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.00 E-value=38 Score=34.97 Aligned_cols=44 Identities=23% Similarity=0.349 Sum_probs=36.6
Q ss_pred chhhHHhhhcC-----CCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 434 TCTAAVILNEL-----PKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 434 ~l~~a~v~~~i-----p~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
..|+++|+.-+ +-.-|+|.+.|++.=+|+.+|..|+++|.+|.+
T Consensus 139 PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv 187 (286)
T PRK14175 139 PCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTI 187 (286)
T ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEE
Confidence 45777666533 456689999999988999999999999999998
No 119
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=40.91 E-value=35 Score=35.42 Aligned_cols=88 Identities=16% Similarity=0.272 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhcC--CeEEEecccccccccccCceeeeecC--CCCceEEecCCchhhHHhhhcCCC---ccceEEEeC
Q 011375 383 KQIEDAILRADRLG--VKVLSLAALNKNESLNGGGTLFVDKH--PNLKVRVVHGNTCTAAVILNELPK---DVKEVFLTG 455 (487)
Q Consensus 383 ~~ie~ai~~a~~~g--~kv~sl~~ln~~~~ln~~g~l~~~~~--p~l~~rvv~g~~l~~a~v~~~ip~---~~~~v~l~g 455 (487)
+.+++.|++|-++| .+|+.. ...-.|.| .+..++. -+..+.++.-|.+.+ +..++-+ |++-|+-.|
T Consensus 131 ~tv~~~l~~A~~~~k~~~V~v~----EsrP~~~G-~~~a~~L~~~GI~vtlI~Dsav~~--~m~~vd~VivGAd~v~~nG 203 (310)
T PRK08535 131 SAALSVIKTAHEQGKDIEVIAT----ETRPRNQG-HITAKELAEYGIPVTLIVDSAVRY--FMKDVDKVVVGADAITANG 203 (310)
T ss_pred HHHHHHHHHHHHCCCeEEEEEe----cCCchhhH-HHHHHHHHHCCCCEEEEehhHHHH--HHHhCCEEEECccEEecCC
Confidence 67777888776665 445543 22233333 5544333 466788887776644 4566655 777777889
Q ss_pred Cc-chHHHHHHHHhh-ccCcEEEe
Q 011375 456 AT-SKLGRAIALYLC-RKRVRVLK 477 (487)
Q Consensus 456 ~~-~k~~~a~a~~lc-~~~~~v~~ 477 (487)
.. +|+|....-.+| +.|+.|.+
T Consensus 204 ~v~nkiGT~~~A~~Ak~~~vPv~V 227 (310)
T PRK08535 204 AVINKIGTSQIALAAHEARVPFMV 227 (310)
T ss_pred CEEeHHhHHHHHHHHHHhCCCEEE
Confidence 88 999988765565 55888887
No 120
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=40.77 E-value=41 Score=34.62 Aligned_cols=54 Identities=28% Similarity=0.340 Sum_probs=39.4
Q ss_pred ecCCchhhHHhhhcCCCcc--ceEEEeCCcchHHHHHHHHhhccCc-EEEe---chhhhhh
Q 011375 430 VHGNTCTAAVILNELPKDV--KEVFLTGATSKLGRAIALYLCRKRV-RVLK---DSRKFRK 484 (487)
Q Consensus 430 v~g~~l~~a~v~~~ip~~~--~~v~l~g~~~k~~~a~a~~lc~~~~-~v~~---~~~~~~~ 484 (487)
-||-.+..+..=+.+|.++ ++|.+.||.| -+|||+.+|.+.|+ +|.+ +.||.++
T Consensus 106 TD~~G~~~~L~~~~~~~~~~~~~vlilGAGG-AarAv~~aL~~~g~~~i~V~NRt~~ra~~ 165 (283)
T COG0169 106 TDGIGFLRALKEFGLPVDVTGKRVLILGAGG-AARAVAFALAEAGAKRITVVNRTRERAEE 165 (283)
T ss_pred CCHHHHHHHHHhcCCCcccCCCEEEEECCcH-HHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3566666665555666665 8899999986 47999999999996 5777 4555543
No 121
>PLN02203 aldehyde dehydrogenase
Probab=40.74 E-value=52 Score=36.24 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=36.4
Q ss_pred ceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 426 KVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 426 ~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.+|+|..-++..++.. | ++.|.+||++ .+|++|+....++..+|.+
T Consensus 166 vv~vv~g~~~~~~~l~~~-~--vd~v~fTGS~-~~G~~v~~~aa~~l~~v~l 213 (484)
T PLN02203 166 AVKVIEGGPAVGEQLLQH-K--WDKIFFTGSP-RVGRIIMTAAAKHLTPVAL 213 (484)
T ss_pred EEEEEeCCHHHHHHHHhC-C--CCEEEEECCH-HHHHHHHHHHHhcCCCEEE
Confidence 467888865566666655 4 8889999987 6788888887777888877
No 122
>PRK08618 ornithine cyclodeaminase; Validated
Probab=40.73 E-value=1.2e+02 Score=31.51 Aligned_cols=84 Identities=19% Similarity=0.281 Sum_probs=55.3
Q ss_pred hhcCCeEEEecccccccccc-cCceeeeec-CCCCceEEecCCchhhH-------HhhhcC-CCccceEEEeCCcchHHH
Q 011375 393 DRLGVKVLSLAALNKNESLN-GGGTLFVDK-HPNLKVRVVHGNTCTAA-------VILNEL-PKDVKEVFLTGATSKLGR 462 (487)
Q Consensus 393 ~~~g~kv~sl~~ln~~~~ln-~~g~l~~~~-~p~l~~rvv~g~~l~~a-------~v~~~i-p~~~~~v~l~g~~~k~~~ 462 (487)
+-.|+|+++.---|..+.|- -.|.+.+.- .-..-+=++||+.+|+. +...-+ +++.+.|.+.|+ |..|+
T Consensus 62 ~~~g~K~~~~~p~n~~~glp~~~g~i~l~d~~tG~p~a~~d~~~lT~~RTaa~sala~~~la~~~~~~v~iiGa-G~~a~ 140 (325)
T PRK08618 62 EALGLKIVSVVPENKKKGKPTIPGTVILSDFETGEVLAILDGTYLTQIRTGALSGVATKYLAREDAKTLCLIGT-GGQAK 140 (325)
T ss_pred CeEEEEEEeecCCCcccCCCcceEEEEEEeCCCCceEEEEccchhhhhhHHHHHHHHHHHhcCCCCcEEEEECC-cHHHH
Confidence 34699999875555443332 235554433 23556678899999852 344556 678999999996 57888
Q ss_pred HHHHHhh-ccCcEEEe
Q 011375 463 AIALYLC-RKRVRVLK 477 (487)
Q Consensus 463 a~a~~lc-~~~~~v~~ 477 (487)
+++.++| .++++-+.
T Consensus 141 ~~~~al~~~~~~~~v~ 156 (325)
T PRK08618 141 GQLEAVLAVRDIERVR 156 (325)
T ss_pred HHHHHHHhcCCccEEE
Confidence 8888887 45654444
No 123
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=40.20 E-value=93 Score=30.79 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=26.6
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.|++.|+++=+|++++..+..+|++|.+
T Consensus 142 ~~vlI~ga~g~~g~~~~~~a~~~g~~v~~ 170 (334)
T PTZ00354 142 QSVLIHAGASGVGTAAAQLAEKYGAATII 170 (334)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcCCEEEE
Confidence 67999999999999999999999999776
No 124
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=39.99 E-value=24 Score=31.77 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHHHhhcCCeEEEe
Q 011375 378 QTGINKQIEDAILRADRLGVKVLSL 402 (487)
Q Consensus 378 ~~~in~~ie~ai~~a~~~g~kv~sl 402 (487)
..|-|..+-+|+.+|.++|+||+++
T Consensus 112 ~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 112 NSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp SSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3466788999999999999999986
No 125
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=39.95 E-value=22 Score=32.98 Aligned_cols=39 Identities=28% Similarity=0.461 Sum_probs=34.2
Q ss_pred hhcCCCccceEEEeCCc---chHHHHHHHHhhccCcEEEe-ch
Q 011375 441 LNELPKDVKEVFLTGAT---SKLGRAIALYLCRKRVRVLK-DS 479 (487)
Q Consensus 441 ~~~ip~~~~~v~l~g~~---~k~~~a~a~~lc~~~~~v~~-~~ 479 (487)
+.+|.+..|.|-+.|++ .|=+.-++.||-++|.+|.= +.
T Consensus 9 i~~iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP 51 (140)
T COG1832 9 IAEILKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNP 51 (140)
T ss_pred HHHHHHhCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCc
Confidence 45677889999999999 78899999999999999987 44
No 126
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.52 E-value=49 Score=34.29 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=37.8
Q ss_pred chhhHHhhh-----cCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 434 TCTAAVILN-----ELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 434 ~l~~a~v~~-----~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
..|+++|+. .|+-.-|.|.+.|.++-+|+.+|..|.++|..|.+
T Consensus 139 PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv 187 (296)
T PRK14188 139 PCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTI 187 (296)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEE
Confidence 356777763 45667889999999999999999999999999998
No 127
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=39.28 E-value=36 Score=35.29 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=30.9
Q ss_pred HhhhcCCCccceEEEeCCc-chHHHHHHHHhhccCcEEEe
Q 011375 439 VILNELPKDVKEVFLTGAT-SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 439 ~v~~~ip~~~~~v~l~g~~-~k~~~a~a~~lc~~~~~v~~ 477 (487)
.+-+-.-++.+.|.=+|++ |=-|+|+|.+-.++|+++.+
T Consensus 58 ~l~~a~~~G~~~vvs~G~s~GN~g~alA~aa~~~G~~~~i 97 (337)
T PRK12390 58 LVPDALAQGADTLVSIGGVQSNHTRQVAAVAAHLGMKCVL 97 (337)
T ss_pred HHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHHcCCeEEE
Confidence 3333446678887877766 89999999998899999988
No 128
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=38.95 E-value=77 Score=30.91 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=29.0
Q ss_pred cCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 443 ELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 443 ~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+++++ +.|+++|+++-+|++++..+..+|.+|..
T Consensus 141 ~~~~~-~~vli~g~~~~~g~~~~~~~~~~g~~v~~ 174 (328)
T cd08268 141 GLRPG-DSVLITAASSSVGLAAIQIANAAGATVIA 174 (328)
T ss_pred CCCCC-CEEEEecCccHHHHHHHHHHHHcCCEEEE
Confidence 34443 57999999999999999999999999888
No 129
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=38.85 E-value=1.2e+02 Score=31.50 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=65.2
Q ss_pred HhhcCCeEEEec----cccccccc-------ccCceeeeecCCCC----------ceEEecCCc--------hh-hHHhh
Q 011375 392 ADRLGVKVLSLA----ALNKNESL-------NGGGTLFVDKHPNL----------KVRVVHGNT--------CT-AAVIL 441 (487)
Q Consensus 392 a~~~g~kv~sl~----~ln~~~~l-------n~~g~l~~~~~p~l----------~~rvv~g~~--------l~-~a~v~ 441 (487)
|.+.|.+|+.+. -++|+|++ ++++-..|-|||+- +|=|+++.+ |+ ...|.
T Consensus 61 ~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~ 140 (304)
T TIGR00658 61 AYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRYVDGIMARVYKHEDVEELAKYASVPVINGLTDLFHPCQALADLLTII 140 (304)
T ss_pred HHHcCCCEEEeCCccccCCCCCCHHHHHHHHHHhCCEEEEECCChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHH
Confidence 456999999985 35677764 66777888888764 667888654 11 12344
Q ss_pred hcCCC-ccceEEEeCCcchHHHHHHHHhhccCcEEEe-chhhhh
Q 011375 442 NELPK-DVKEVFLTGATSKLGRAIALYLCRKRVRVLK-DSRKFR 483 (487)
Q Consensus 442 ~~ip~-~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~-~~~~~~ 483 (487)
++.+. +-..|-..|..+.+.+..+..|.+-|++|.+ +.+.|+
T Consensus 141 e~~g~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~ 184 (304)
T TIGR00658 141 EHFGKLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYE 184 (304)
T ss_pred HHhCCCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhc
Confidence 44442 2235778899999999999999999999999 655554
No 130
>PRK07877 hypothetical protein; Provisional
Probab=38.74 E-value=23 Score=41.04 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=30.3
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCc--EEEe-chhhhhhcc
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRV--RVLK-DSRKFRKKH 486 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~--~v~~-~~~~~~~~~ 486 (487)
-+.|++.|. | ||.++|.+|++.|| ++.+ +.|..|.+.
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sN 146 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSN 146 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccc
Confidence 457999999 7 99999999999997 6666 777776554
No 131
>PRK09183 transposase/IS protein; Provisional
Probab=38.72 E-value=36 Score=34.15 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=25.6
Q ss_pred ceEEEeCCc--ch--HHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGAT--SK--LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~ 477 (487)
+-|+++|.+ || ++.||+..+|++|.+|..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~ 135 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRF 135 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 468899988 78 899999999999999977
No 132
>PRK06046 alanine dehydrogenase; Validated
Probab=38.71 E-value=1.5e+02 Score=30.69 Aligned_cols=84 Identities=23% Similarity=0.276 Sum_probs=56.4
Q ss_pred hhcCCeEEEeccccccccccc-Cceeee-ecCCCCceEEecCCchhhH-------HhhhcC-CCccceEEEeCCcchHHH
Q 011375 393 DRLGVKVLSLAALNKNESLNG-GGTLFV-DKHPNLKVRVVHGNTCTAA-------VILNEL-PKDVKEVFLTGATSKLGR 462 (487)
Q Consensus 393 ~~~g~kv~sl~~ln~~~~ln~-~g~l~~-~~~p~l~~rvv~g~~l~~a-------~v~~~i-p~~~~~v~l~g~~~k~~~ 462 (487)
+..|+|+++.--=|-++.|.. .|...+ +..-..-.=++||+.||+. +-..-+ |++.+.|-+.|+ |..|+
T Consensus 64 ~~~g~K~~~~~p~N~~~glp~~~g~i~L~d~~tG~p~aild~~~lT~~RTaA~sala~~~La~~~~~~vgiiG~-G~qa~ 142 (326)
T PRK06046 64 DIAGVKIVNVHPGNPDRGLPTVMAVIILNSPETGFPLAIMDGTYLTDMRTGAAGGVAAKYLARKDSKVVGIIGA-GNQAR 142 (326)
T ss_pred CeEEEEEEeeCCCCcccCCCceeEEEEEEeCCCCceEEEEcCccHHHHHHHHHHHHHHHHhCCCCCCEEEEECC-cHHHH
Confidence 457999998765565444432 244444 3333455668899999852 223445 788999999985 67889
Q ss_pred HHHHHhh-ccCcEEEe
Q 011375 463 AIALYLC-RKRVRVLK 477 (487)
Q Consensus 463 a~a~~lc-~~~~~v~~ 477 (487)
+.+.+|+ .++++.+.
T Consensus 143 ~h~~al~~~~~i~~v~ 158 (326)
T PRK06046 143 TQLLALSEVFDLEEVR 158 (326)
T ss_pred HHHHHHHhhCCceEEE
Confidence 9999888 45776665
No 133
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=38.60 E-value=42 Score=34.17 Aligned_cols=138 Identities=14% Similarity=0.124 Sum_probs=80.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhcCCcc--------hHhHHhhccCCCCCCCCcccccccChHHHHHHHHH----
Q 011375 117 RWNTKGFIALQILHVAVSEPLYYVLHRHFHRNK--------YLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAI---- 184 (487)
Q Consensus 117 ~W~~~gli~~~ll~~l~~Df~~Yw~HRllH~~~--------~ly~r~Hk~HHss~~p~~~ta~~~hplE~ll~~~~---- 184 (487)
.|.+ .+++.+...+..|+..=.+|++.-+.. .-+-+ =+-||. .|++-.+..++|.+-....
T Consensus 105 ~~~~--~~La~~aG~i~AD~~SGl~HWaaD~~Gsv~tP~vG~~f~r-freHH~----dP~tITr~~f~~~~~ll~~a~~f 177 (293)
T KOG3011|consen 105 LWLE--PALAAYAGYITADLGSGVYHWAADNYGSVSTPWVGRQFER-FQEHHK----DPWTITRRQFANNLHLLARAYTF 177 (293)
T ss_pred hhHH--HHHHHHHHHHHHhhhcceeEeeccccCccccchhHHHHHH-HHhccC----CcceeeHHHHhhhhHHHHHhhee
Confidence 4555 566667778888999999999865431 12334 567775 4566677787776422111
Q ss_pred HHHHHHHHHhhcchh--HHHHHHHHHHHHHHHhhcccceeecCCCcc--ccccccccccCCchhhhhhhcC-CCCCcccC
Q 011375 185 VAIPILGSSIIGYGS--ISLIYGYILMFDFLRCLGHCNVEIIPHRWF--ETFPFLRYLLYTPTYHSLHHTE-KDSNFCLF 259 (487)
Q Consensus 185 ~~iPll~~~llG~~s--~~~i~~y~~~~~~~~~~~Hsn~e~~P~~~~--~~~p~l~~li~tp~~H~lHH~~-~~~NYG~~ 259 (487)
...|.-.+.--...+ +.++.+++++..-..-+.|.=..+ |.+.. +. -.++..-.+|..||.. .++|||..
T Consensus 178 ~v~~~d~~~q~~~~h~fV~~~~i~v~~tnQiHkWsHTy~gL-P~wVv~LQd----~hlilpRkhH~iHH~aPh~~yyCI~ 252 (293)
T KOG3011|consen 178 IVLPLDLAFQDPVFHGFVFLFAICVLFTNQIHKWSHTYSGL-PPWVVLLQD----MHLILPRKHHRIHHVAPHNTYYCIV 252 (293)
T ss_pred EecCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhhhccC-chHHHHHhh----cceecccccccccccCccccceEEe
Confidence 011221100000001 223334445555556678865555 55421 11 1245567899999987 79999999
Q ss_pred chhHHhh
Q 011375 260 MPLFDAL 266 (487)
Q Consensus 260 ~~lWDrL 266 (487)
.++|.+.
T Consensus 253 tGw~N~~ 259 (293)
T KOG3011|consen 253 SGWWNWV 259 (293)
T ss_pred echhhch
Confidence 9998775
No 134
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=38.25 E-value=58 Score=32.21 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=26.6
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.+.|++.|+++=+|.+++..+..+|.+|.+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~ 176 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVA 176 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEE
Confidence 357999999999999999888889999887
No 135
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=37.91 E-value=1e+02 Score=30.36 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=27.0
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-..|++.|+++=+|.+++..+.++|++|..
T Consensus 139 ~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~ 168 (323)
T cd05282 139 GDWVIQNAANSAVGRMLIQLAKLLGFKTIN 168 (323)
T ss_pred CCEEEEcccccHHHHHHHHHHHHCCCeEEE
Confidence 357889999999999999999999999877
No 136
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.
Probab=37.89 E-value=75 Score=34.26 Aligned_cols=53 Identities=26% Similarity=0.357 Sum_probs=35.8
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+=-+.+|.|+.-..+-.|-+-| +++-|++||++ ++|+.|+....++..+|.+
T Consensus 172 P~~~~~~v~g~~~~~~~~L~~~~-~vd~v~ftGs~-~~g~~v~~~aa~~l~~~~l 224 (457)
T cd07108 172 PAGVLNVITGYGEECGAALVDHP-DVDKVTFTGST-EVGKIIYRAAADRLIPVSL 224 (457)
T ss_pred CcCcEEEEeCCchHHHHHHhcCC-CcCEEEEECcH-HHHHHHHHHHhccCCeEEE
Confidence 44446778875443333333333 78889999965 6888888887777777766
No 137
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=37.83 E-value=42 Score=26.52 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=35.5
Q ss_pred cCCchhhHHhhhcCCCccceEEEeCCc-chHHHHHHHHhhccCcEEEe-chhhhhhc
Q 011375 431 HGNTCTAAVILNELPKDVKEVFLTGAT-SKLGRAIALYLCRKRVRVLK-DSRKFRKK 485 (487)
Q Consensus 431 ~g~~l~~a~v~~~ip~~~~~v~l~g~~-~k~~~a~a~~lc~~~~~v~~-~~~~~~~~ 485 (487)
-|-.+.-+++-+. ++ .++||++-.. ++-...+...+.++|++|.. +++.++|.
T Consensus 3 eG~~~V~eaL~~~-~~-i~~l~~~~~~~~~~~~~i~~~~~~~~i~v~~v~~~~l~~l 57 (76)
T PF08032_consen 3 EGRHAVEEALKSG-PR-IKKLFVTEEKADKRIKEILKLAKKKGIPVYEVSKKVLDKL 57 (76)
T ss_dssp ESHHHHHHHHHCT-GG-EEEEEEETT---CCTHHHHHHHHHCT-EEEEE-HHHHHHC
T ss_pred EEHHHHHHHHcCC-CC-ccEEEEEcCccchhHHHHHHHHHHcCCeEEEeCHHHHHHH
Confidence 3444555555554 44 9999999883 44446788888889999999 88888764
No 138
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=37.65 E-value=54 Score=33.63 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=26.6
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.|++.|. |.+|+++|..|.+.|.+|.+
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v 180 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALGANVTV 180 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCEEEE
Confidence 479999997 67999999999999999998
No 139
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=37.52 E-value=41 Score=36.66 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=28.9
Q ss_pred ceEEEeCCc--ch--HHHHHHHHhhccCcEEEe-chhhh
Q 011375 449 KEVFLTGAT--SK--LGRAIALYLCRKRVRVLK-DSRKF 482 (487)
Q Consensus 449 ~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~-~~~~~ 482 (487)
+-+|+.|.. || +.+|||.+++++|.+|+. +.++|
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f 180 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF 180 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH
Confidence 568999998 88 899999999999999987 65544
No 140
>PLN02527 aspartate carbamoyltransferase
Probab=37.19 E-value=1.1e+02 Score=31.64 Aligned_cols=92 Identities=24% Similarity=0.324 Sum_probs=66.6
Q ss_pred HhhcCCeEEEecc------ccccccc-------ccCceeeeecCCCC----------ceEEecC-Cc--------hh-hH
Q 011375 392 ADRLGVKVLSLAA------LNKNESL-------NGGGTLFVDKHPNL----------KVRVVHG-NT--------CT-AA 438 (487)
Q Consensus 392 a~~~g~kv~sl~~------ln~~~~l-------n~~g~l~~~~~p~l----------~~rvv~g-~~--------l~-~a 438 (487)
+.+.|.+++.|.. +.|+|++ +++.-..|-|||+- +|=|+++ ++ |+ ..
T Consensus 61 ~~~LGg~~i~l~~~~~~s~~~kgEs~~Dta~vls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~ 140 (306)
T PLN02527 61 MKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGYSDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVY 140 (306)
T ss_pred HHHcCCCEEEeCCCCCccccCCCcCHHHHHHHHHHhCcEEEEECCChhHHHHHHHhCCCCEEECCCCCCCChHHHHHHHH
Confidence 5689999999965 4577876 78888999999863 7778887 32 22 22
Q ss_pred HhhhcCCC-ccceEEEeCCc--chHHHHHHHHhhcc-CcEEEe-chhhhh
Q 011375 439 VILNELPK-DVKEVFLTGAT--SKLGRAIALYLCRK-RVRVLK-DSRKFR 483 (487)
Q Consensus 439 ~v~~~ip~-~~~~v~l~g~~--~k~~~a~a~~lc~~-~~~v~~-~~~~~~ 483 (487)
.|..+... +-..|-+.|.. |++.+..+..|++. |+.|.. +.+.|+
T Consensus 141 Ti~e~~g~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~ 190 (306)
T PLN02527 141 TIQREIGRLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVK 190 (306)
T ss_pred HHHHHhCCcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccC
Confidence 33333432 23578899985 69999999999986 999988 666663
No 141
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=37.05 E-value=75 Score=32.82 Aligned_cols=84 Identities=21% Similarity=0.238 Sum_probs=51.6
Q ss_pred hhcCCeEEEecccccccccccC-ceeee-ecCCCCceEEecCCchhh-------HHhhhcC-CCccceEEEeCCcchHHH
Q 011375 393 DRLGVKVLSLAALNKNESLNGG-GTLFV-DKHPNLKVRVVHGNTCTA-------AVILNEL-PKDVKEVFLTGATSKLGR 462 (487)
Q Consensus 393 ~~~g~kv~sl~~ln~~~~ln~~-g~l~~-~~~p~l~~rvv~g~~l~~-------a~v~~~i-p~~~~~v~l~g~~~k~~~ 462 (487)
+-.|+|++|.--=|....|... |.+.+ +..-..=+=++||+.||+ |+-.+-+ |++.+.+.+-|+ |..||
T Consensus 63 ~~~gvK~v~~~p~N~~~glP~~~g~i~L~D~~TG~p~ai~dg~~lT~~RTaA~sala~~~La~~~~~~l~viGa-G~QA~ 141 (313)
T PF02423_consen 63 PVAGVKWVSVFPGNPKRGLPSIQGVILLFDPETGEPLAIMDGTWLTALRTAAVSALAARYLARPDARTLGVIGA-GVQAR 141 (313)
T ss_dssp TEEEEEEEEEETTCGGGTSSSEEEEEEEEETTT--EEEEEESHHHHHHHHHHHHHHHHHHHS-TT--EEEEE---SHHHH
T ss_pred cEEEEEEEEecCCccccCCCceeEEEEEEECCCCCEEEEecccchhhhHHHHHHHHHHHHhCcCCCceEEEECC-CHHHH
Confidence 4789999998877877766543 44444 333344456999999975 2333333 788999988885 68899
Q ss_pred HHHHHhhc-cCcEEEe
Q 011375 463 AIALYLCR-KRVRVLK 477 (487)
Q Consensus 463 a~a~~lc~-~~~~v~~ 477 (487)
.-+.++|+ ++++-+.
T Consensus 142 ~~~~a~~~~~~i~~v~ 157 (313)
T PF02423_consen 142 WHLRALAAVRPIKEVR 157 (313)
T ss_dssp HHHHHHHHHS--SEEE
T ss_pred HHHHHHHHhCCceEEE
Confidence 88888884 4454333
No 142
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=37.01 E-value=64 Score=34.78 Aligned_cols=53 Identities=23% Similarity=0.181 Sum_probs=33.7
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|.=-+.+|+|+.-.+.--|-+- ++++-|.+||+++ +|+.|+....+++.+|.+
T Consensus 179 p~g~~~~v~g~~~~~~~~l~~~-~~v~~V~fTGs~~-~g~~i~~~aa~~~~~v~l 231 (456)
T cd07145 179 PPGVINVVTGYGSEVGDEIVTN-PKVNMISFTGSTA-VGLLIASKAGGTGKKVAL 231 (456)
T ss_pred CcccEEEEeCCCchHHHHHhcC-CCCCEEEEECCHH-HHHHHHHHHhhcCCceEE
Confidence 3334677877532221112122 3788889999775 888888888888888765
No 143
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=36.82 E-value=34 Score=35.89 Aligned_cols=34 Identities=38% Similarity=0.448 Sum_probs=27.5
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCc-EEEe-chhhhh
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRV-RVLK-DSRKFR 483 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~-~v~~-~~~~~~ 483 (487)
+.|++.|+ |-+|..+|.+|++.|+ ++.+ +.+.-+
T Consensus 25 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve 60 (339)
T PRK07688 25 KHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVE 60 (339)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccC
Confidence 56899998 6799999999999999 6666 555433
No 144
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=36.71 E-value=29 Score=38.28 Aligned_cols=22 Identities=27% Similarity=0.172 Sum_probs=20.4
Q ss_pred CcchHHHHHHHHhhccCcEEEe
Q 011375 456 ATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 456 ~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+|||.|+|||.++.+||-+|..
T Consensus 280 SSGkmG~alA~aa~~~GA~Vtl 301 (475)
T PRK13982 280 SSGKQGFAIAAAAAAAGAEVTL 301 (475)
T ss_pred CchHHHHHHHHHHHHCCCcEEE
Confidence 3599999999999999999988
No 145
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=36.62 E-value=26 Score=35.31 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhcCCeEEEecccccccccccCceeeeecCCCCceEEecCCchhhH
Q 011375 383 KQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAA 438 (487)
Q Consensus 383 ~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p~l~~rvv~g~~l~~a 438 (487)
..+++++.+..+.|-+||++.+..+--.--.+-....+..++.+|+|+|-.+..++
T Consensus 65 ~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~ 120 (275)
T TIGR00762 65 GEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVDEAKVTVIDSKSASMG 120 (275)
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCCCCCEEEECChHHHHH
Confidence 45677777777788899999887664433223334445667779999998887665
No 146
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=36.48 E-value=1.4e+02 Score=29.20 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=51.6
Q ss_pred hcCCeEEEecccccccccccCceeeeecCCCCceEEecCCchhhHHh-----------hhcC--CCccceEEEeCCcchH
Q 011375 394 RLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAVI-----------LNEL--PKDVKEVFLTGATSKL 460 (487)
Q Consensus 394 ~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p~l~~rvv~g~~l~~a~v-----------~~~i--p~~~~~v~l~g~~~k~ 460 (487)
+.|-+|+.++.++ .+++-.=|+....+.-+++-++-+..+|+. ++++ .+.-..|++.|++|=+
T Consensus 81 ~~Gd~V~~~~~~~----~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~ 156 (319)
T cd08267 81 KVGDEVFGRLPPK----GGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGV 156 (319)
T ss_pred CCCCEEEEeccCC----CCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHH
Confidence 4577777775542 122223355555566667766655533222 1222 2234689999999999
Q ss_pred HHHHHHHhhccCcEEEe
Q 011375 461 GRAIALYLCRKRVRVLK 477 (487)
Q Consensus 461 ~~a~a~~lc~~~~~v~~ 477 (487)
|.+++..+..+|++|..
T Consensus 157 g~~~~~la~~~g~~v~~ 173 (319)
T cd08267 157 GTFAVQIAKALGAHVTG 173 (319)
T ss_pred HHHHHHHHHHcCCEEEE
Confidence 99999988899999987
No 147
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=36.31 E-value=1.4e+02 Score=28.22 Aligned_cols=73 Identities=25% Similarity=0.376 Sum_probs=47.0
Q ss_pred HHHHHHhhcCCeEEEecccccccccccCceeeeecCCCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHH
Q 011375 387 DAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIAL 466 (487)
Q Consensus 387 ~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~ 466 (487)
.||+.|.+.|. .+ .|.+|||.--|= .+-|..|++ .++++|+.-....|-.---..
T Consensus 87 nAi~~a~~~~~------------~~-~g~tLYvTlePC---------~~Ca~aI~~---~gI~rVvy~~~~~~~~~~~~~ 141 (168)
T PHA02588 87 NAILFAARNGI------------SI-EGATMYVTASPC---------PDCAKAIAQ---SGIKKLVYCEKYDRNGPGWDD 141 (168)
T ss_pred HHHHHHhhcCC------------CC-CCcEEEEeCCCc---------HHHHHHHHH---hCCCEEEEeeccCCCcHHHHH
Confidence 46777766543 23 368999999887 344455555 388888885543333222355
Q ss_pred HhhccCcEEEe-chhhhhh
Q 011375 467 YLCRKRVRVLK-DSRKFRK 484 (487)
Q Consensus 467 ~lc~~~~~v~~-~~~~~~~ 484 (487)
.|-+.||+|.. .+|+..|
T Consensus 142 ~L~~~Gi~v~~~~~~~~~~ 160 (168)
T PHA02588 142 ILRKSGIEVIQIPKEELNK 160 (168)
T ss_pred HHHHCCCEEEEeCHHHHHh
Confidence 78899999987 6665544
No 148
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=36.30 E-value=17 Score=30.10 Aligned_cols=36 Identities=28% Similarity=0.437 Sum_probs=30.2
Q ss_pred cCCchhhHHhhhcCCCccceEEEeCCc-chHHHHHHHH
Q 011375 431 HGNTCTAAVILNELPKDVKEVFLTGAT-SKLGRAIALY 467 (487)
Q Consensus 431 ~g~~l~~a~v~~~ip~~~~~v~l~g~~-~k~~~a~a~~ 467 (487)
.|..|+||-|++.|-+..... |+|.+ +..||.+...
T Consensus 22 e~e~lsa~~If~~L~k~~~~~-l~~~~~~~FGriL~~~ 58 (73)
T PF12990_consen 22 EGEWLSAAEIFERLQKKSPAA-LRGSNPNHFGRILQKL 58 (73)
T ss_pred cceeecHHHHHHHHHHhCccc-cccCCHHHHHHHHHHc
Confidence 578899999999998776665 89988 9999987754
No 149
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=35.85 E-value=69 Score=32.17 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=39.4
Q ss_pred CCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhcc-CcEEEe
Q 011375 424 NLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRK-RVRVLK 477 (487)
Q Consensus 424 ~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~-~~~v~~ 477 (487)
..+..-|.|..|+-.+.=....++ ..|||-|++-.+....+..|.++ |++|.-
T Consensus 82 ~~~~~Rv~G~dl~~~ll~~~~~~~-~~v~llG~~~~v~~~a~~~l~~~y~l~i~g 135 (243)
T PRK03692 82 QAQVSRVAGADLWEALMARAGKEG-TPVFLVGGKPEVLAQTEAKLRTQWNVNIVG 135 (243)
T ss_pred CCCCCeeChHHHHHHHHHHHHhcC-CeEEEECCCHHHHHHHHHHHHHHhCCEEEE
Confidence 344556778888877554334445 78999999988889999999876 888764
No 150
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=35.58 E-value=75 Score=32.50 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=23.4
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcE-EEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVR-VLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~-v~~ 477 (487)
-|.|++.|+.| .|||||.+|.+.|++ |.+
T Consensus 127 ~k~vlilGaGG-aarAi~~aL~~~g~~~i~i 156 (283)
T PRK14027 127 LDSVVQVGAGG-VGNAVAYALVTHGVQKLQV 156 (283)
T ss_pred CCeEEEECCcH-HHHHHHHHHHHCCCCEEEE
Confidence 46899999965 579999999999984 555
No 151
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=35.23 E-value=81 Score=31.72 Aligned_cols=85 Identities=15% Similarity=0.258 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcCCe--EEEeccccccc-ccccCceeeeecCCCCceEEec----CCchhhHHhhhcCCCccceEEEeCCc
Q 011375 385 IEDAILRADRLGVK--VLSLAALNKNE-SLNGGGTLFVDKHPNLKVRVVH----GNTCTAAVILNELPKDVKEVFLTGAT 457 (487)
Q Consensus 385 ie~ai~~a~~~g~k--v~sl~~ln~~~-~ln~~g~l~~~~~p~l~~rvv~----g~~l~~a~v~~~ip~~~~~v~l~g~~ 457 (487)
+++++.+..+.|++ |+++|. ++- -.+++ +.+ ..|-.++++|| |++.+|+.+.--+ .|..
T Consensus 203 ~~~~~~~~~~~g~~~vvvT~G~--~G~~~~~~~-~~~--~~~~~~v~vvDttGAGDaF~Agfi~~l~---------~g~~ 268 (309)
T PRK13508 203 LKEVLQQPLFEGIEWIIVSLGA--DGAFAKHND-TFY--KVDIPKIEVVNPVGSGDSTVAGIASGLL---------HQED 268 (309)
T ss_pred HHHHHHHHHHcCCCEEEEecCC--CceEEEeCC-ceE--EEeCCCccccCCcChhHHHHHHHHHHHH---------cCCC
Confidence 34444443355765 466765 221 12322 222 23556788999 9999998776432 2322
Q ss_pred ----chHHHHHHHHhhccCcEEEechhhhh
Q 011375 458 ----SKLGRAIALYLCRKRVRVLKDSRKFR 483 (487)
Q Consensus 458 ----~k~~~a~a~~lc~~~~~v~~~~~~~~ 483 (487)
=|.|.|.|..-|++-..+..++++++
T Consensus 269 ~~~al~~a~a~aa~~~~~~~~~~~~~~~~~ 298 (309)
T PRK13508 269 DADLLKKANVLGMLNAQEKQTGHVNMANYD 298 (309)
T ss_pred HHHHHHHHHHHHHHHhcCcCcCCCCHHHHH
Confidence 58999999888876555555444443
No 152
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=35.05 E-value=67 Score=31.14 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=28.9
Q ss_pred HhhhcCCCccceEEEeCCc--chHHHHHHHHhhccCcEEEe
Q 011375 439 VILNELPKDVKEVFLTGAT--SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 439 ~v~~~ip~~~~~v~l~g~~--~k~~~a~a~~lc~~~~~v~~ 477 (487)
.+.+..|++.+=++|+|.. |==|.++|.+|.+.|++|.+
T Consensus 37 ~i~~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~V~~ 77 (205)
T TIGR00197 37 AVLQAFPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVEVFL 77 (205)
T ss_pred HHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHhCCCEEEE
Confidence 4455566655555676655 77889999999889999988
No 153
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=34.98 E-value=25 Score=33.37 Aligned_cols=28 Identities=36% Similarity=0.392 Sum_probs=21.5
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+|...|- ||+|+.+|.+|-..|.+|.+
T Consensus 24 k~vvV~GY-G~vG~g~A~~lr~~Ga~V~V 51 (162)
T PF00670_consen 24 KRVVVIGY-GKVGKGIARALRGLGARVTV 51 (162)
T ss_dssp SEEEEE---SHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEEeCC-CcccHHHHHHHhhCCCEEEE
Confidence 44555543 89999999999999999998
No 154
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=34.92 E-value=69 Score=31.84 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=26.5
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.|+.+|++|=+|.+.+..+..+|++|..
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~ 173 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIKGCKVIG 173 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEE
Confidence 368999999999999988888889999876
No 155
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=34.90 E-value=42 Score=35.70 Aligned_cols=39 Identities=13% Similarity=-0.037 Sum_probs=27.5
Q ss_pred HhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 439 VILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 439 ~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.++...-.+.+.|..+..++--|+|+|.+-.+.|+++.+
T Consensus 89 ~~~~a~~~g~~~vi~e~ssGN~G~alA~~a~~~Gl~~~I 127 (385)
T TIGR00263 89 QALLAKRMGKKRIIAETGAGQHGVATATAAALLGLDCEV 127 (385)
T ss_pred HHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCEEE
Confidence 333333445567777455555999999988899999887
No 156
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=34.80 E-value=80 Score=34.67 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=36.3
Q ss_pred CCCceEEecCCchhh-HHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTA-AVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~-a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+=-+.+|+|+.-.+ ..++. -++++-|.+||++ ++|+.|+....++..+|.+
T Consensus 202 P~gvv~vv~g~~~~~~~~l~~--~~~v~~v~FTGS~-~~G~~i~~~aa~~l~~~~l 254 (482)
T PRK11241 202 PAGVFNVVTGSAGAVGGELTS--NPLVRKLSFTGST-EIGRQLMEQCAKDIKKVSL 254 (482)
T ss_pred CcccEEEEecCCchhHHHHhc--CCCCCEEEEECcH-HHHHHHHHHHHhcCCcEEE
Confidence 555578898864433 22332 3478899999965 7888888887777777766
No 157
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=34.71 E-value=45 Score=32.97 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=25.4
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEE
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVL 476 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~ 476 (487)
-+.|.+.| .|+||+.+|..|.++|.+|+
T Consensus 31 ~~~v~I~G-~G~VG~~~a~~L~~~g~~vv 58 (227)
T cd01076 31 GARVAIQG-FGNVGSHAARFLHEAGAKVV 58 (227)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 36788888 69999999999999999999
No 158
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=34.65 E-value=44 Score=36.14 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=25.0
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcE-EEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVR-VLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~-v~~ 477 (487)
-+.|++.|+ |+.|+++|.+|+++|+. +.+
T Consensus 181 ~kkvlviGa-G~~a~~va~~L~~~g~~~I~V 210 (414)
T PRK13940 181 SKNVLIIGA-GQTGELLFRHVTALAPKQIML 210 (414)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCCEEEE
Confidence 367999998 89999999999999974 555
No 159
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=34.59 E-value=3.1e+02 Score=25.46 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=27.4
Q ss_pred CccceEEEeCCc-chHHHHHHHHhhccCcEEEe
Q 011375 446 KDVKEVFLTGAT-SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 446 ~~~~~v~l~g~~-~k~~~a~a~~lc~~~~~v~~ 477 (487)
.++++|.++|-. +--=.+.|..++++|++|.+
T Consensus 112 ~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~v~v 144 (179)
T cd01015 112 RGVDTLIVAGCSTSGCIRATAVDAMQHGFRPIV 144 (179)
T ss_pred cCCCEEEEeeecccHhHHHHHHHHHHCCCeEEE
Confidence 478999999987 55557788999999999999
No 160
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=34.52 E-value=66 Score=32.15 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=24.7
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.|+++|+++ +|++++..+.++|++|..
T Consensus 164 ~~vlI~g~g~-iG~~~~~~a~~~G~~v~~ 191 (330)
T cd08245 164 ERVAVLGIGG-LGHLAVQYARAMGFETVA 191 (330)
T ss_pred CEEEEECCCH-HHHHHHHHHHHCCCEEEE
Confidence 5788899888 999998888899999887
No 161
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=34.46 E-value=76 Score=34.33 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=33.2
Q ss_pred eEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 427 VRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 427 ~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.||+|+.-+.+.++. | +++.|.+||++ ++|++|+....++..+|.+
T Consensus 159 ~~vv~g~~~~~~~l~~--~-~vd~V~fTGs~-~~g~~i~~~a~~~~~~~~l 205 (443)
T cd07132 159 YPVVLGGVEETTELLK--Q-RFDYIFYTGST-SVGKIVMQAAAKHLTPVTL 205 (443)
T ss_pred EEEEeCCHHHHHHHHh--C-CCCEEEEECCh-HHHHHHHHHHHhhCCceEE
Confidence 4478776444444554 4 79999999976 6788888776666777765
No 162
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=34.40 E-value=1e+02 Score=30.55 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=26.7
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.|+..|+++=+|.+++..+..+|++|..
T Consensus 140 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~ 169 (324)
T cd08292 140 GQWLIQNAAGGAVGKLVAMLAAARGINVIN 169 (324)
T ss_pred CCEEEEcccccHHHHHHHHHHHHCCCeEEE
Confidence 357888999999999999998999999887
No 163
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.17 E-value=64 Score=33.58 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=37.8
Q ss_pred chhhHHhhh-----cCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 434 TCTAAVILN-----ELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 434 ~l~~a~v~~-----~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
..|+++|+. .|+-.-|+|-+.|.++=+|+.+|..|.++|..|.+
T Consensus 140 PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv 188 (301)
T PRK14194 140 PCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTV 188 (301)
T ss_pred CCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence 457777765 34667789999999999999999999999999998
No 164
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=34.12 E-value=1.4e+02 Score=29.27 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=24.2
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcE-EEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVR-VLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~-v~~ 477 (487)
.+.|++.|+ +=+|.+++..+.+.|++ |.+
T Consensus 130 ~~~vlI~g~-g~vg~~~~~la~~~g~~~v~~ 159 (312)
T cd08269 130 GKTVAVIGA-GFIGLLFLQLAAAAGARRVIA 159 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCcEEEE
Confidence 467888885 56999999999999999 777
No 165
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=34.10 E-value=55 Score=30.90 Aligned_cols=43 Identities=26% Similarity=0.465 Sum_probs=32.9
Q ss_pred hhhHHhhh-----cCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 435 CTAAVILN-----ELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 435 l~~a~v~~-----~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.||.+|+. .++-+-|.|.+.|.+.=||+.+|..|-++|..|.+
T Consensus 18 cTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~ 65 (160)
T PF02882_consen 18 CTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTI 65 (160)
T ss_dssp HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEE
T ss_pred CCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEe
Confidence 45555543 24667799999999999999999999999999998
No 166
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=34.02 E-value=1.8e+02 Score=26.49 Aligned_cols=89 Identities=18% Similarity=0.144 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHhhcCCeEEEecccccccccccCceeee--ec-CCCCc------eEEecCCchhhHHhhhcCCCccce
Q 011375 380 GINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFV--DK-HPNLK------VRVVHGNTCTAAVILNELPKDVKE 450 (487)
Q Consensus 380 ~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~--~~-~p~l~------~rvv~g~~l~~a~v~~~ip~~~~~ 450 (487)
.+=.-|.+.+..|.+.|+.|+-.. +.+ .++|++.= +. .|+-. .--..|+.|.. .|++ .++++
T Consensus 20 ~~~~~i~~l~~~ar~~g~pVi~~~---~~~--~~~g~~~~~l~~~~~~~~vi~K~~~saf~~t~L~~--~L~~--~gi~~ 90 (157)
T cd01012 20 ELINNTVKLAKAAKLLDVPVILTE---QYP--KGLGPTVPELREVFPDAPVIEKTSFSCWEDEAFRK--ALKA--TGRKQ 90 (157)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEe---eCC--CCCCCchHHHHhhCCCCCceecccccCcCCHHHHH--HHHh--cCCCE
Confidence 333445666677889999999752 111 12333221 11 12110 00122222322 3332 48899
Q ss_pred EEEeCCc-chHHHHHHHHhhccCcEEEe
Q 011375 451 VFLTGAT-SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 451 v~l~g~~-~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.++|-. +=-=.+.|..+.++|++|.+
T Consensus 91 lii~G~~T~~CV~~Ta~~a~~~g~~v~v 118 (157)
T cd01012 91 VVLAGLETHVCVLQTALDLLEEGYEVFV 118 (157)
T ss_pred EEEEEeeccHHHHHHHHHHHHCCCEEEE
Confidence 9999998 55558888899999999998
No 167
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=33.86 E-value=75 Score=32.19 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=26.8
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.|+.+|++|=+|.+++..+..+|++|..
T Consensus 152 g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~ 181 (338)
T cd08295 152 GETVFVSAASGAVGQLVGQLAKLKGCYVVG 181 (338)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEE
Confidence 468999999999999999888899999876
No 168
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=33.66 E-value=33 Score=35.21 Aligned_cols=29 Identities=28% Similarity=0.404 Sum_probs=23.8
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+..+++..+|--|+|+|.+-.++|+++.+
T Consensus 71 ~~~vv~aSsGN~g~a~A~~a~~~g~~~~v 99 (328)
T TIGR00260 71 NDTVLCASTGNTGAAAAAYAGKAGVKVVI 99 (328)
T ss_pred CCEEEEeCCcHHHHHHHHHhccCCCcEEE
Confidence 45678877899999999665577999988
No 169
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=33.61 E-value=24 Score=31.92 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.8
Q ss_pred eEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 450 EVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 450 ~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.|=+.|+ ||||++++.+|-++|..|.-
T Consensus 12 ~I~iIGa-GrVG~~La~aL~~ag~~v~~ 38 (127)
T PF10727_consen 12 KIGIIGA-GRVGTALARALARAGHEVVG 38 (127)
T ss_dssp EEEEECT-SCCCCHHHHHHHHTTSEEEE
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCeEEE
Confidence 5667787 89999999999999999876
No 170
>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.
Probab=33.59 E-value=85 Score=34.31 Aligned_cols=53 Identities=28% Similarity=0.350 Sum_probs=36.8
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+=-+.+|+|+.-.++..|-+ .++++-|.+||++ ++|+.|+.+..++..+|.+
T Consensus 191 P~gvv~~v~g~~~~~~~~L~~-~~~v~~V~fTGs~-~~g~~i~~~aa~~~~p~~l 243 (480)
T cd07559 191 PKGVVNVVTGFGSEAGKPLAS-HPRIAKLAFTGST-TVGRLIMQYAAENLIPVTL 243 (480)
T ss_pred CcCeEEEEecCchHHHHHHhc-CCCCCEEEEECcH-HHHHHHHHHHhccCCcEEe
Confidence 444578888864332222222 2478899999976 6889998888888888865
No 171
>PRK06823 ornithine cyclodeaminase; Validated
Probab=33.54 E-value=1.9e+02 Score=29.96 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=53.9
Q ss_pred hhcCCeEEEeccccccccccc-CceeeeecCCCCceE-Ee-cCCchhh-------HHhhhcC-CCccceEEEeCCcchHH
Q 011375 393 DRLGVKVLSLAALNKNESLNG-GGTLFVDKHPNLKVR-VV-HGNTCTA-------AVILNEL-PKDVKEVFLTGATSKLG 461 (487)
Q Consensus 393 ~~~g~kv~sl~~ln~~~~ln~-~g~l~~~~~p~l~~r-vv-~g~~l~~-------a~v~~~i-p~~~~~v~l~g~~~k~~ 461 (487)
+-.|+|++|.--=|....|-. .|.+.+.---.-+.. +. ||+.||+ |+-.+-+ +++.+.+-+.|+ |..|
T Consensus 62 ~~~g~K~v~~~p~N~~~glP~~~g~v~l~d~~TG~p~Ail~d~~~lT~~RTaA~sala~~~La~~d~~~l~iiG~-G~qA 140 (315)
T PRK06823 62 DQFVVKVSTGFYDNPAQGLPSNQGLMLAFSAKTGEPQALLLDEGWLTALRTALAGRIVARLLAPQHVSAIGIVGT-GIQA 140 (315)
T ss_pred CeEEEEEEeecCCCccCCCCCeeEEEEEEECCCCceEEEEcCCChHHHHHHHHHHHHHHHHhcCCCCCEEEEECC-cHHH
Confidence 347899998766666544422 344444422223555 44 9999975 2333445 789999999985 6888
Q ss_pred HHHHHHhh--ccCcEEEe
Q 011375 462 RAIALYLC--RKRVRVLK 477 (487)
Q Consensus 462 ~a~a~~lc--~~~~~v~~ 477 (487)
|.-+.++| +.--+|.+
T Consensus 141 ~~~~~a~~~v~~i~~v~v 158 (315)
T PRK06823 141 RMQLMYLKNVTDCRQLWV 158 (315)
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 88888888 33445555
No 172
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=33.51 E-value=46 Score=32.14 Aligned_cols=92 Identities=14% Similarity=0.110 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhcCCeEEEeccccc-----ccccc--cCceeeeecCCCCceEEecCCchhhHHhhhc-CCCccceEEE
Q 011375 382 NKQIEDAILRADRLGVKVLSLAALNK-----NESLN--GGGTLFVDKHPNLKVRVVHGNTCTAAVILNE-LPKDVKEVFL 453 (487)
Q Consensus 382 n~~ie~ai~~a~~~g~kv~sl~~ln~-----~~~ln--~~g~l~~~~~p~l~~rvv~g~~l~~a~v~~~-ip~~~~~v~l 453 (487)
+..+++|+..|++.|.+|..+-.-++ .+++. |..++|+-.+|.+.- -+.-..|-++.+ |-+.--+++|
T Consensus 38 ~~~l~ea~~la~~~g~~v~av~~G~~~~~~~~~~l~~~G~d~V~~~~~~~~~~----~~~e~~a~al~~~i~~~~p~lVL 113 (202)
T cd01714 38 EYAVEEALRLKEKYGGEVTVVSMGPPQAEEALREALAMGADRAILVSDRAFAG----ADTLATAKALAAAIKKIGVDLIL 113 (202)
T ss_pred HHHHHHHHHhhhhcCCEEEEEEECCHHHHHHHHHHHHcCCCEEEEEecccccC----CChHHHHHHHHHHHHHhCCCEEE
Confidence 45566777778777755443332222 23443 344688877776543 233232222222 2221135788
Q ss_pred eCCc--chHHHHHHHHhhcc-CcEEEe
Q 011375 454 TGAT--SKLGRAIALYLCRK-RVRVLK 477 (487)
Q Consensus 454 ~g~~--~k~~~a~a~~lc~~-~~~v~~ 477 (487)
.|+| +|-||.+|-.|+.| |.-++.
T Consensus 114 ~~~t~~~~~grdlaprlAarLga~lvs 140 (202)
T cd01714 114 TGKQSIDGDTGQVGPLLAELLGWPQIT 140 (202)
T ss_pred EcCCcccCCcCcHHHHHHHHhCCCccc
Confidence 8888 56788888888744 555443
No 173
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=32.66 E-value=98 Score=28.47 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=32.5
Q ss_pred cCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 443 ELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 443 ~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.|+-.-|+|..-|.+.-+|+.+|..|-++|..|..
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~ 57 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYS 57 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 56777889999999999999999999999999988
No 174
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=32.59 E-value=83 Score=31.25 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=28.9
Q ss_pred CCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 444 LPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 444 ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
++++-+.|++.|+++=+|.+++..+..+|++|.+
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~ 175 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVA 175 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEE
Confidence 4455448999999999999999988899999887
No 175
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=32.59 E-value=55 Score=32.17 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=26.2
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.-+.|.+.| .|+||+.+|..|+++|.+|+.
T Consensus 22 ~g~~vaIqG-fGnVG~~~a~~L~~~G~~vV~ 51 (217)
T cd05211 22 EGLTVAVQG-LGNVGWGLAKKLAEEGGKVLA 51 (217)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEE
Confidence 457888888 589999999999999998776
No 176
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=32.36 E-value=66 Score=34.60 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=26.1
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCc-EEEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRV-RVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~-~v~~ 477 (487)
.-+.|.+.|+ |++|+++|.+|.++|+ +|.+
T Consensus 181 ~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v 211 (423)
T PRK00045 181 SGKKVLVIGA-GEMGELVAKHLAEKGVRKITV 211 (423)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHCCCCeEEE
Confidence 4478999997 9999999999999998 6766
No 177
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=32.27 E-value=1e+02 Score=34.02 Aligned_cols=53 Identities=30% Similarity=0.330 Sum_probs=34.2
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhc-cCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCR-KRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~-~~~~v~~ 477 (487)
|+=-+.+|+|+.-.+...|-+- ++++-|.+||++ ++|++|+.+.++ +..+|.+
T Consensus 214 P~gvv~~v~g~~~~~~~~L~~~-p~v~~V~FTGS~-~~G~~i~~~aa~~~l~~~~l 267 (501)
T PLN02766 214 PDGVINVVTGFGPTAGAAIASH-MDVDKVSFTGST-EVGRKIMQAAATSNLKQVSL 267 (501)
T ss_pred CcCcEEEEecCchHHHHHHhcC-CCCCEEEEECcH-HHHHHHHHHhhhcCCCeEEE
Confidence 4444678888654433333333 348888999976 678888887773 5667765
No 178
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=32.07 E-value=1.3e+02 Score=32.93 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=45.8
Q ss_pred HHHHHHhhcCCeEEEecccccccccccCceeeeecCCCCceEEecCCchhhHHhhh------cCCCccceEEEeCCcchH
Q 011375 387 DAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAVILN------ELPKDVKEVFLTGATSKL 460 (487)
Q Consensus 387 ~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p~l~~rvv~g~~l~~a~v~~------~ip~~~~~v~l~g~~~k~ 460 (487)
+++.++.+.++-|++..-.|-.. ..|-.--|+-.+++ ++.-.-+.|.+.|. |++
T Consensus 164 ~~~~~~~~l~~Pv~~vn~s~~K~-------------------~~dn~~gt~~s~~~ai~rat~~~l~Gk~VlViG~-G~I 223 (425)
T PRK05476 164 YAMAKDGALKFPAINVNDSVTKS-------------------KFDNRYGTGESLLDGIKRATNVLIAGKVVVVAGY-GDV 223 (425)
T ss_pred HHHHHcCCCCCCEEecCCcccCc-------------------cccccHHHHhhhHHHHHHhccCCCCCCEEEEECC-CHH
Confidence 34555667788888765554332 11222222333332 33334567899996 799
Q ss_pred HHHHHHHhhccCcEEEe
Q 011375 461 GRAIALYLCRKRVRVLK 477 (487)
Q Consensus 461 ~~a~a~~lc~~~~~v~~ 477 (487)
|+.+|..|-..|.+|++
T Consensus 224 G~~vA~~lr~~Ga~ViV 240 (425)
T PRK05476 224 GKGCAQRLRGLGARVIV 240 (425)
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 99999999999999999
No 179
>PF10991 DUF2815: Protein of unknown function (DUF2815); InterPro: IPR022595 This entry is represented by Bacteriophage APSE-1, protein 50. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=32.05 E-value=81 Score=30.49 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=43.8
Q ss_pred eeccCccccccchhhhhHHHHHHHHHHHhhcCC-eEEEecccc--------cccccc---c---CceeeeecCCCCceEE
Q 011375 365 VPRYGFQYFLPFAQTGINKQIEDAILRADRLGV-KVLSLAALN--------KNESLN---G---GGTLFVDKHPNLKVRV 429 (487)
Q Consensus 365 ~pr~~~~y~~~~~~~~in~~ie~ai~~a~~~g~-kv~sl~~ln--------~~~~ln---~---~g~l~~~~~p~l~~rv 429 (487)
=|+|+-...+|.....-.+.||+||.+|-+.|. +..-.+.+. .++.-. + .|..|++..-+-|-.|
T Consensus 27 ~~KYs~t~lipK~d~~t~~~I~~Ai~~a~~~~~~~k~~~~~~~~~~k~plrDGD~~~~~d~~~y~g~~~i~A~sk~~P~v 106 (181)
T PF10991_consen 27 EPKYSATLLIPKSDKETIAAIKAAIEAAIEEGWGNKWKGKKIPANLKLPLRDGDEKRPSDGEEYEGHYFINASSKKRPGV 106 (181)
T ss_pred CcceeEEEEEcCCCHHHHHHHHHHHHHHHHhcccccccccccCccccccccCCCcccCCCCcccCccEEEecCCCCCCeE
Confidence 588888888987666555677778887766665 221122211 111111 2 4667787776678889
Q ss_pred ecCCch
Q 011375 430 VHGNTC 435 (487)
Q Consensus 430 v~g~~l 435 (487)
||.+.=
T Consensus 107 vD~~~~ 112 (181)
T PF10991_consen 107 VDRQKQ 112 (181)
T ss_pred EcCCCC
Confidence 987753
No 180
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=31.87 E-value=43 Score=36.13 Aligned_cols=72 Identities=36% Similarity=0.438 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhcCCeE-EEecccccccccc----------------cCceeeeecCCCCceEEecCC--------chh-
Q 011375 383 KQIEDAILRADRLGVKV-LSLAALNKNESLN----------------GGGTLFVDKHPNLKVRVVHGN--------TCT- 436 (487)
Q Consensus 383 ~~ie~ai~~a~~~g~kv-~sl~~ln~~~~ln----------------~~g~l~~~~~p~l~~rvv~g~--------~l~- 436 (487)
.+||+-|.+.+-.|.|| ||||--|-|..+| |+|+ .-+-.+.--||||= --.
T Consensus 90 Tqi~~di~~CQS~GiKVlLSLGG~~GnYs~~~d~dA~~fA~~LWn~Fg~G~---~S~RPfg~AVvDGfDF~IE~g~~~~y 166 (568)
T KOG4701|consen 90 TQIETDIQVCQSNGIKVLLSLGGYNGNYSLNNDDDATNFAFQLWNIFGSGE---DSYRPFGKAVVDGFDFEIEKGTNTAY 166 (568)
T ss_pred chhhhHHHHHHhcCeEEEEeccCcccceeeccchhHHHHHHHHHHHhcCCc---cccCcccchhccceeeeeecCCcchH
Confidence 37999999999999999 5999888888777 4555 44445666677772 221
Q ss_pred --hHHhh-hcCCCccceEEEeCCc
Q 011375 437 --AAVIL-NELPKDVKEVFLTGAT 457 (487)
Q Consensus 437 --~a~v~-~~ip~~~~~v~l~g~~ 457 (487)
-|--| ...-.+.++..|+||.
T Consensus 167 saLA~~L~~~Fa~~~r~yYLsaAP 190 (568)
T KOG4701|consen 167 SALAKRLLEIFASDPRRYYLSAAP 190 (568)
T ss_pred HHHHHHHHHHHccCCceEEeccCC
Confidence 22333 3336789999999986
No 181
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=31.70 E-value=50 Score=28.49 Aligned_cols=42 Identities=10% Similarity=0.256 Sum_probs=30.0
Q ss_pred ccchhhhhHHHHHHHHHHHhhcCCeEEEecccccccccccCce
Q 011375 374 LPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGT 416 (487)
Q Consensus 374 ~~~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~ 416 (487)
+-....|=|+.+.+++..|.++|+||+++-.-.. ..|-+...
T Consensus 52 i~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~-s~la~~ad 93 (128)
T cd05014 52 IAISNSGETDELLNLLPHLKRRGAPIIAITGNPN-STLAKLSD 93 (128)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC-CchhhhCC
Confidence 3334556689999999999999999999976443 33443333
No 182
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=31.56 E-value=81 Score=30.96 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCC----------------------eEEEeccccccccc----ccC--------ceeeeecCCCCce
Q 011375 382 NKQIEDAILRADRLGV----------------------KVLSLAALNKNESL----NGG--------GTLFVDKHPNLKV 427 (487)
Q Consensus 382 n~~ie~ai~~a~~~g~----------------------kv~sl~~ln~~~~l----n~~--------g~l~~~~~p~l~~ 427 (487)
|+.+++||.+|.++|+ .||+.|+.|++.++ |.| |+-.....|+=..
T Consensus 106 ~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~~~~~~~s~~g~~~di~ApG~~i~~~~~~~~~ 185 (239)
T cd05561 106 NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDARGRLYREANRGAHVDFAAPGVDVWVAAPGGGY 185 (239)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCCCCccccCCCCCcceEEccccceecccCCCCE
Q ss_pred EEecCCchhhHHh
Q 011375 428 RVVHGNTCTAAVI 440 (487)
Q Consensus 428 rvv~g~~l~~a~v 440 (487)
+.+.|+|++|+.|
T Consensus 186 ~~~sGTS~AaP~v 198 (239)
T cd05561 186 RYVSGTSFAAPFV 198 (239)
T ss_pred EEeCCHHHHHHHH
No 183
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=31.53 E-value=64 Score=30.79 Aligned_cols=53 Identities=23% Similarity=0.465 Sum_probs=33.5
Q ss_pred ecCCCCceEEecCC-----------chhhHHhhhcC-CC-ccceEEEeCCcchHHHHHHHHhhccCcE
Q 011375 420 DKHPNLKVRVVHGN-----------TCTAAVILNEL-PK-DVKEVFLTGATSKLGRAIALYLCRKRVR 474 (487)
Q Consensus 420 ~~~p~l~~rvv~g~-----------~l~~a~v~~~i-p~-~~~~v~l~g~~~k~~~a~a~~lc~~~~~ 474 (487)
+++|++++.++..+ .+++. ++++. ++ ...+|+++|..+=+ +++...|.+.|+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~l~~~~~~~~~~~v~icGp~~m~-~~~~~~l~~~gv~ 222 (231)
T cd06215 157 RRHPNFRLHLILEQPAPGAWGGYRGRLNAE-LLALLVPDLKERTVFVCGPAGFM-KAVKSLLAELGFP 222 (231)
T ss_pred HHCCCeEEEEEEccCCCCcccccCCcCCHH-HHHHhcCCccCCeEEEECCHHHH-HHHHHHHHHcCCC
Confidence 45677777765322 23343 44444 43 23589999997544 7888888888873
No 184
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=31.06 E-value=1.3e+02 Score=29.84 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=26.7
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.|++.|++|-+|.+++..+.++|++|..
T Consensus 140 ~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~ 169 (329)
T cd08250 140 GETVLVTAAAGGTGQFAVQLAKLAGCHVIG 169 (329)
T ss_pred CCEEEEEeCccHHHHHHHHHHHHcCCeEEE
Confidence 357999999999999999888899999877
No 185
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=31.05 E-value=1.8e+02 Score=31.87 Aligned_cols=92 Identities=21% Similarity=0.283 Sum_probs=67.3
Q ss_pred HhhcCCeEEEecc-----cccccc-------cccCceeeeecCCC----------CceEEecCCc---------hhh-HH
Q 011375 392 ADRLGVKVLSLAA-----LNKNES-------LNGGGTLFVDKHPN----------LKVRVVHGNT---------CTA-AV 439 (487)
Q Consensus 392 a~~~g~kv~sl~~-----ln~~~~-------ln~~g~l~~~~~p~----------l~~rvv~g~~---------l~~-a~ 439 (487)
+.+.|..++.++. +.|+|+ |++++-..|-|||. .+|=|++|-+ |+= ..
T Consensus 148 ~~~LGg~~i~l~~~~~ss~~kGESi~DTarvLs~y~D~IviR~~~~~~~~e~A~~s~vPVINAgdg~~~HPtQaLaDl~T 227 (429)
T PRK11891 148 FCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGYVDALVIRHPEQGSVAEFARATNLPVINGGDGPGEHPSQALLDLYT 227 (429)
T ss_pred HHHcCCeEEEeCCccccCCCCCCCHHHHHHHHHHhCCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHH
Confidence 4579999999953 667886 47788889989887 4888999753 222 23
Q ss_pred hhhcCCC-----ccceEEEeCCc--chHHHHHHHHhhcc-CcEEEe-chhhhh
Q 011375 440 ILNELPK-----DVKEVFLTGAT--SKLGRAIALYLCRK-RVRVLK-DSRKFR 483 (487)
Q Consensus 440 v~~~ip~-----~~~~v~l~g~~--~k~~~a~a~~lc~~-~~~v~~-~~~~~~ 483 (487)
|..+.+. +=+.|-+.|.. +++++..+..||+. |+.|.. +.+.|+
T Consensus 228 i~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~ 280 (429)
T PRK11891 228 IQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLE 280 (429)
T ss_pred HHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccc
Confidence 3343321 12478889998 89999999999986 999988 666664
No 186
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=30.89 E-value=1.1e+02 Score=33.37 Aligned_cols=53 Identities=34% Similarity=0.368 Sum_probs=32.8
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+=-+.+|.|+.-.++-.|-+-| +++-|++||++ ++|+.|+....++..+|.+
T Consensus 190 P~gv~~~v~g~~~~~~~~l~~~~-~v~~V~fTGs~-~~g~~i~~~aa~~~~~~~l 242 (482)
T cd07119 190 PAGVVNLVTGSGATVGAELAESP-DVDLVSFTGGT-ATGRSIMRAAAGNVKKVAL 242 (482)
T ss_pred CcCcEEEEecCcHHHHHHHhcCC-CCCEEEEECcH-HHHHHHHHHHHhcCCcEEE
Confidence 44446677775432222222222 67788888876 6788888776666666665
No 187
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=30.88 E-value=1.6e+02 Score=28.67 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=28.2
Q ss_pred CCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 444 LPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 444 ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
++++ +.|+++|+++=+|.+++..+..+|++|.+
T Consensus 137 ~~~~-~~vlv~g~~~~~g~~~~~~a~~~g~~v~~ 169 (325)
T TIGR02824 137 LKAG-ETVLIHGGASGIGTTAIQLAKAFGARVFT 169 (325)
T ss_pred CCCC-CEEEEEcCcchHHHHHHHHHHHcCCEEEE
Confidence 3443 68999999999999999999999999877
No 188
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=30.86 E-value=39 Score=34.90 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=27.8
Q ss_pred cCCCccceEEEeCCc-chHHHHHHHHhhccCcEEEe
Q 011375 443 ELPKDVKEVFLTGAT-SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 443 ~ip~~~~~v~l~g~~-~k~~~a~a~~lc~~~~~v~~ 477 (487)
..-++.+.|.-.|++ |--|.|+|.+..+.|+++.+
T Consensus 59 a~~~g~~~vvt~g~s~gN~g~alA~~a~~~G~~~~i 94 (331)
T PRK03910 59 ALAQGADTLITAGAIQSNHARQTAAAAAKLGLKCVL 94 (331)
T ss_pred HHHcCCCEEEEcCcchhHHHHHHHHHHHHhCCcEEE
Confidence 334567788866754 79999999988899999887
No 189
>PRK09929 hypothetical protein; Provisional
Probab=30.71 E-value=55 Score=28.30 Aligned_cols=37 Identities=22% Similarity=0.499 Sum_probs=24.8
Q ss_pred HHHHHH-HHhhcCCeEEEecccccccccccCceeeeec
Q 011375 385 IEDAIL-RADRLGVKVLSLAALNKNESLNGGGTLFVDK 421 (487)
Q Consensus 385 ie~ai~-~a~~~g~kv~sl~~ln~~~~ln~~g~l~~~~ 421 (487)
+|++|. .||+.|++-.-.=.-|.+..+.+.-++|-+|
T Consensus 54 ~~~~La~KAd~~GA~yY~Ii~a~~~n~~h~tA~IYkk~ 91 (91)
T PRK09929 54 AKEDLIKKADEKGADVLVLTSGQTDNKIHGTADIYKKK 91 (91)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCCCCcEEEEEEeeecC
Confidence 566666 7999999844333335555677888888654
No 190
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=30.54 E-value=1.1e+02 Score=29.49 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=27.4
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.+.|++.|+++=+|.+++..+..+|++|.+
T Consensus 145 ~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~ 174 (309)
T cd05289 145 GQTVLIHGAAGGVGSFAVQLAKARGARVIA 174 (309)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCEEEE
Confidence 468999999999999999999999999987
No 191
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=30.52 E-value=58 Score=33.96 Aligned_cols=66 Identities=26% Similarity=0.397 Sum_probs=40.4
Q ss_pred cCCeEEEecc----ccccccc-ccCceeeeecCCCCceEEec-CCchhhHHhhhcCCCccceEEEeCCc-chHHHHHHHH
Q 011375 395 LGVKVLSLAA----LNKNESL-NGGGTLFVDKHPNLKVRVVH-GNTCTAAVILNELPKDVKEVFLTGAT-SKLGRAIALY 467 (487)
Q Consensus 395 ~g~kv~sl~~----ln~~~~l-n~~g~l~~~~~p~l~~rvv~-g~~l~~a~v~~~ip~~~~~v~l~g~~-~k~~~a~a~~ 467 (487)
-|+|++.|+. +.+.+++ .+.|-.-|+-+..+||.|+. ||.+. .|.. .|-|.+|+..
T Consensus 125 A~~riiPl~v~~~~~~~a~~~~~~~gi~~V~v~r~~rv~II~TG~Ev~-----------------~G~i~D~~~~~l~~~ 187 (312)
T cd03522 125 ATVKIIPLAVPEALVERAEALARDGPLLRVAPFRPLRVGLIVTGSEVY-----------------GGRIEDKFGPVLRAR 187 (312)
T ss_pred EEEEEeeeecCHHHHHHHHHHHHhCCCcEEEecCCCEEEEEEcCCcCC-----------------CCcEEEhHHHHHHHH
Confidence 3677777774 4555544 44577778888888888874 66532 2222 5556666666
Q ss_pred hhccCcEEEe
Q 011375 468 LCRKRVRVLK 477 (487)
Q Consensus 468 lc~~~~~v~~ 477 (487)
|-+.|.+|.-
T Consensus 188 L~~~G~~v~~ 197 (312)
T cd03522 188 LAALGVELVE 197 (312)
T ss_pred HHHCCCEEEE
Confidence 6666665543
No 192
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.48 E-value=73 Score=32.95 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=37.4
Q ss_pred hhhHHhhh-----cCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 435 CTAAVILN-----ELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 435 l~~a~v~~-----~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.|+++|+. .|+-.=|+|...|.+.-||+-+|..|-++|..|.+
T Consensus 139 cTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv 186 (285)
T PRK14191 139 ATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSV 186 (285)
T ss_pred CcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEE
Confidence 67777765 34666789999999999999999999999999998
No 193
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=30.35 E-value=1.2e+02 Score=33.16 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=33.0
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhc-cCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCR-KRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~-~~~~v~~ 477 (487)
|.=-+.+|.|+.-.++..|.+-| +++-|.+||++ .+|+.|+.+.++ +..+|.+
T Consensus 197 P~gvv~~v~g~~~~~~~~L~~~~-~v~~v~fTGs~-~~G~~v~~~aa~~~~~~v~l 250 (476)
T cd07142 197 PDGVLNIVTGFGPTAGAAIASHM-DVDKVAFTGST-EVGKIIMQLAAKSNLKPVTL 250 (476)
T ss_pred CcccEEEEeCCchhHHHHHhcCC-CCCEEEEECcH-HHHHHHHHHHHHcCCCeEEE
Confidence 33346677776544444443333 47778888865 577778777665 5667765
No 194
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=30.29 E-value=43 Score=34.64 Aligned_cols=55 Identities=31% Similarity=0.456 Sum_probs=37.0
Q ss_pred cchhhhhHHHHHHH-------------------HHHHh-hcCCeEEEecccccc-----------cccccCceeeeecCC
Q 011375 375 PFAQTGINKQIEDA-------------------ILRAD-RLGVKVLSLAALNKN-----------ESLNGGGTLFVDKHP 423 (487)
Q Consensus 375 ~~~~~~in~~ie~a-------------------i~~a~-~~g~kv~sl~~ln~~-----------~~ln~~g~l~~~~~p 423 (487)
|.-||-|-++|.+| ++||- |+||-|-=| |++. -.+|. ...+
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiL--LD~~~~~~Fl~Mc~~~~v~~------~~~~ 204 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYIL--LDEQNLPHFLEMCEKLGVNL------QHLK 204 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEE--echhcChHHHHHHHHCCCCh------hhcC
Confidence 44577777777776 45665 999988543 3332 22332 3468
Q ss_pred CCceEEecCCchhh
Q 011375 424 NLKVRVVHGNTCTA 437 (487)
Q Consensus 424 ~l~~rvv~g~~l~~ 437 (487)
|+|||.|.|.|--+
T Consensus 205 nmrVRsv~G~~y~~ 218 (284)
T PF07894_consen 205 NMRVRSVTGCTYYS 218 (284)
T ss_pred CeEEEEecCCeeec
Confidence 99999999998643
No 195
>PRK00124 hypothetical protein; Validated
Probab=30.28 E-value=3.2e+02 Score=25.78 Aligned_cols=83 Identities=20% Similarity=0.222 Sum_probs=57.3
Q ss_pred HHHHHHHHhhcCCeEEEecccccccccccCceeeeecCCCCceEEec-CCchhhHHhhhcCCCccceEEEeCCcchHHHH
Q 011375 385 IEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVH-GNTCTAAVILNELPKDVKEVFLTGATSKLGRA 463 (487)
Q Consensus 385 ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p~l~~rvv~-g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a 463 (487)
.|+.+.-|++.|++|+-.+-.|+.-.. ...|..+..+|+ |.--+=-.|+|.+-++ ++..|..-+
T Consensus 13 k~~i~r~a~r~~i~v~~Vas~n~~~~~--------~~~~~v~~v~V~~g~D~AD~~Iv~~~~~g--DiVIT~Di~----- 77 (151)
T PRK00124 13 KDIIIRVAERHGIPVTLVASFNHFLRV--------PYSPFIRTVYVDAGFDAADNEIVQLAEKG--DIVITQDYG----- 77 (151)
T ss_pred HHHHHHHHHHHCCeEEEEEeCCcccCC--------CCCCceEEEEeCCCCChHHHHHHHhCCCC--CEEEeCCHH-----
Confidence 456666789999999999988876432 233556777787 5555556888888666 568887643
Q ss_pred HHHHhhccCcEEEe-chhhh
Q 011375 464 IALYLCRKRVRVLK-DSRKF 482 (487)
Q Consensus 464 ~a~~lc~~~~~v~~-~~~~~ 482 (487)
+|.-+-.||..|+= +-+.|
T Consensus 78 LAa~~l~Kga~vl~prG~~y 97 (151)
T PRK00124 78 LAALALEKGAIVLNPRGYIY 97 (151)
T ss_pred HHHHHHHCCCEEECCCCcCC
Confidence 45555588988876 44444
No 196
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=30.09 E-value=28 Score=35.00 Aligned_cols=86 Identities=20% Similarity=0.351 Sum_probs=50.7
Q ss_pred HHHHHHHHhhcC--CeEEEecccccccccccCceeeeecC--CCCceEEecCCchhhHHhhhc-CCC---ccceEEEeCC
Q 011375 385 IEDAILRADRLG--VKVLSLAALNKNESLNGGGTLFVDKH--PNLKVRVVHGNTCTAAVILNE-LPK---DVKEVFLTGA 456 (487)
Q Consensus 385 ie~ai~~a~~~g--~kv~sl~~ln~~~~ln~~g~l~~~~~--p~l~~rvv~g~~l~~a~v~~~-ip~---~~~~v~l~g~ 456 (487)
+++++.+|.+.| .+|+-+- ..-.+. |...+++. -+..|.++.-+. ++.++.+ +-+ |++-|+-.|+
T Consensus 120 v~~~l~~a~~~~~~~~V~v~e----s~P~~e-G~~~a~~L~~~gi~v~~i~d~~--~~~~m~~~vd~VliGad~v~~nG~ 192 (282)
T PF01008_consen 120 VERFLLSAKKKGKKFRVIVLE----SRPYNE-GRLMAKELAEAGIPVTLIPDSA--VGYVMPRDVDKVLIGADAVLANGG 192 (282)
T ss_dssp HHHHHHHHHHTTEEEEEEEE------TTTTH-HHTHHHHHHHTT-EEEEE-GGG--HHHHHHCTESEEEEE-SEEETTS-
T ss_pred HHHHHHHHHHcCCeEEEEEcc----CCcchh-hhhHHHHhhhcceeEEEEechH--HHHHHHHhCCeeEEeeeEEecCCC
Confidence 777777777754 6666553 222222 35555444 345666666554 4555666 544 7778888887
Q ss_pred c-chHHHHHHHHhh-ccCcEEEe
Q 011375 457 T-SKLGRAIALYLC-RKRVRVLK 477 (487)
Q Consensus 457 ~-~k~~~a~a~~lc-~~~~~v~~ 477 (487)
- +|+|.+..--+| +.++.|.+
T Consensus 193 v~nk~Gt~~~a~~Ak~~~vPv~v 215 (282)
T PF01008_consen 193 VVNKVGTLQLALAAKEFNVPVYV 215 (282)
T ss_dssp EEEETTHHHHHHHHHHTT-EEEE
T ss_pred EeehhhHHHHHHHHHhhCCCEEE
Confidence 7 999987665555 55999988
No 197
>cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like. Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.
Probab=29.90 E-value=1e+02 Score=33.22 Aligned_cols=47 Identities=23% Similarity=0.430 Sum_probs=32.7
Q ss_pred eEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 427 VRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 427 ~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.+|+|+.-+++.+++. | ++.|.+||.+ ++|+.|+....++..++.+
T Consensus 159 v~~v~g~~~~~~~l~~~-~--v~~v~ftGs~-~~g~~i~~~aa~~~~~~~l 205 (433)
T cd07134 159 VAVFEGDAEVAQALLEL-P--FDHIFFTGSP-AVGKIVMAAAAKHLASVTL 205 (433)
T ss_pred EEEEeCChhHHHHHHhC-C--CCEEEEECCh-HHHHHHHHHHHhcCCcEEE
Confidence 56777766555555553 3 7888999966 4788888776666667665
No 198
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=29.88 E-value=1.1e+02 Score=32.92 Aligned_cols=52 Identities=25% Similarity=0.304 Sum_probs=32.1
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+=-+.+|+|++-++..++.. ++++-|.+||++ ..|+.|+.+..++-.+|.+
T Consensus 172 P~g~~~~v~g~~~~~~~L~~~--~~v~~V~fTGs~-~~g~~v~~~a~~~~~~v~l 223 (452)
T cd07102 172 PEGVFQVLHLSHETSAALIAD--PRIDHVSFTGSV-AGGRAIQRAAAGRFIKVGL 223 (452)
T ss_pred CcCcEEEEeCCchhHHHHhcC--CCCCEEEEECcH-HHHHHHHHHHHhcCCcEEE
Confidence 333466777765333333332 567788888865 5677777776666666665
No 199
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=29.78 E-value=1.7e+02 Score=28.98 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=26.7
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.+.|+..|+++=+|.+++..+..+|++|..
T Consensus 140 g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~ 169 (331)
T cd08273 140 GQRVLIHGASGGVGQALLELALLAGAEVYG 169 (331)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCEEEE
Confidence 468899999999999999888899999887
No 200
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=29.62 E-value=85 Score=31.57 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=23.3
Q ss_pred ceEEEeCCc--chHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGAT--SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~--~k~~~a~a~~lc~~~~~v~~ 477 (487)
+=++|+|.. |==|.++|.+|.++|++|.+
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v 92 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTV 92 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEE
Confidence 345666655 77899999999999999887
No 201
>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.
Probab=29.62 E-value=97 Score=33.74 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=32.6
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|.=-+.+|+|+.=+.+..++. | ++-|.+||++ ++|+.|+....++..+|.+
T Consensus 155 P~gv~~~v~g~~~~~~~L~~~-~--v~~V~fTGS~-~~g~~i~~~aa~~~~~v~l 205 (449)
T cd07136 155 DEEYVAVVEGGVEENQELLDQ-K--FDYIFFTGSV-RVGKIVMEAAAKHLTPVTL 205 (449)
T ss_pred CCCEEEEEeCChHHHHHHhcC-C--CCEEEEECCH-HHHHHHHHHHHhcCCCEEE
Confidence 333456777654333444442 3 8888888876 4788888777777777765
No 202
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=29.27 E-value=73 Score=32.43 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=31.2
Q ss_pred ecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcE-EEe
Q 011375 430 VHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVR-VLK 477 (487)
Q Consensus 430 v~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~-v~~ 477 (487)
-||.....+.--+.++. -+.|++.|+.| .||||+.+|.+.|++ |.+
T Consensus 105 TD~~Gf~~~L~~~~~~~-~~~vlilGaGG-aarAi~~aL~~~g~~~i~i 151 (272)
T PRK12550 105 TDYIAIAKLLASYQVPP-DLVVALRGSGG-MAKAVAAALRDAGFTDGTI 151 (272)
T ss_pred cCHHHHHHHHHhcCCCC-CCeEEEECCcH-HHHHHHHHHHHCCCCEEEE
Confidence 35555554443233433 25799999854 689999999999985 777
No 203
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=29.23 E-value=2.2e+02 Score=28.18 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=27.7
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.+.|++.|++|=+|.+++.....+|++|.+
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~ 176 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVA 176 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEE
Confidence 3457999999999999999999999999887
No 204
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=29.16 E-value=93 Score=31.24 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=26.2
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.|+++|++|=+|.+.+..+..+|.+|..
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~ 168 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKGCKVVG 168 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcCCEEEE
Confidence 57999999999999999888889999876
No 205
>PRK12404 stage V sporulation protein AD; Provisional
Probab=28.87 E-value=38 Score=35.78 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=23.0
Q ss_pred eEEEeCCcchHHHHHHHHhh-ccCcEE
Q 011375 450 EVFLTGATSKLGRAIALYLC-RKRVRV 475 (487)
Q Consensus 450 ~v~l~g~~~k~~~a~a~~lc-~~~~~v 475 (487)
+..+||..||||+.|+.-|+ ++|+.+
T Consensus 227 DlI~TGDLg~vG~~i~~~ll~~~g~~~ 253 (334)
T PRK12404 227 DLIVTGDLGHVGREIAKDLLHKHGVKV 253 (334)
T ss_pred cEEEEcchHHHHHHHHHHHHHHcCCCC
Confidence 67899999999999999999 558765
No 206
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=28.85 E-value=81 Score=29.19 Aligned_cols=96 Identities=23% Similarity=0.306 Sum_probs=55.6
Q ss_pred hhhhhHHHHHHHHHHHhhcCCeEEEecccccc----cccc--cCceeeeecCCCCceEEecCCch-hhHHhhhcCCCccc
Q 011375 377 AQTGINKQIEDAILRADRLGVKVLSLAALNKN----ESLN--GGGTLFVDKHPNLKVRVVHGNTC-TAAVILNELPKDVK 449 (487)
Q Consensus 377 ~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~----~~ln--~~g~l~~~~~p~l~~rvv~g~~l-~~a~v~~~ip~~~~ 449 (487)
....+++.-.+++-.|++.|.+|..+..=++. +++- |-.+.|+-.+|.+.-. +.- .+.++..-|-+.--
T Consensus 9 ~~g~l~~~s~el~~~A~~l~~~v~~v~~G~~~~~~~~~~~~~Gad~v~~~~~~~~~~~----~~~~~a~al~~~i~~~~p 84 (168)
T cd01715 9 RNGELRELTLEAVTAARKLGGEVTALVIGSGAEAVAAALKAYGADKVLVAEDPALAHY----LAEPYAPALVALAKKEKP 84 (168)
T ss_pred cCCChHHHHHHHHHHHHHhCCCEEEEEECCChHHHHHHHHhcCCCEEEEecChhhccc----ChHHHHHHHHHHHHhcCC
Confidence 44568888888888899987454433322221 2232 3335666666665432 222 23333333433334
Q ss_pred eEEEeCCcchHHHHHHHHhhcc-CcEEEe
Q 011375 450 EVFLTGATSKLGRAIALYLCRK-RVRVLK 477 (487)
Q Consensus 450 ~v~l~g~~~k~~~a~a~~lc~~-~~~v~~ 477 (487)
++.|.|+|+ .||.+|-.|+.| |..++.
T Consensus 85 ~~Vl~~~t~-~g~~la~rlAa~L~~~~vt 112 (168)
T cd01715 85 SHILAGATS-FGKDLAPRVAAKLDVGLIS 112 (168)
T ss_pred CEEEECCCc-cccchHHHHHHHhCCCcee
Confidence 789999994 588888888744 665554
No 207
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=28.66 E-value=99 Score=30.95 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhhcCCe--EEEecccccccccccCceeeeec------CCCCceEEec----CCchhhHHhhhcCCC
Q 011375 379 TGINKQIEDAILRADRLGVK--VLSLAALNKNESLNGGGTLFVDK------HPNLKVRVVH----GNTCTAAVILNELPK 446 (487)
Q Consensus 379 ~~in~~ie~ai~~a~~~g~k--v~sl~~ln~~~~ln~~g~l~~~~------~p~l~~rvv~----g~~l~~a~v~~~ip~ 446 (487)
+..++..|.+-.-.++.|+| |+++| +.|..+..+ .|..++++|| |++.+|+.+..
T Consensus 209 ~~~~~~~~~~~~l~~~~g~~~vivT~G---------~~G~~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~ag~~~~---- 275 (315)
T TIGR02198 209 DTEAELVQAAEKLLEELDLEALLVTRS---------EKGMTLFTREGEPIHIPAQAREVYDVTGAGDTVIATLALA---- 275 (315)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEcC---------CCCeEEEecCCCeEEecCCCCCCCCCcCccHHHHHHHHHH----
Q ss_pred ccceEEEeCCc----chHHHHHHHHhhcc
Q 011375 447 DVKEVFLTGAT----SKLGRAIALYLCRK 471 (487)
Q Consensus 447 ~~~~v~l~g~~----~k~~~a~a~~lc~~ 471 (487)
++.|.+ -|.|.+.|.+-|++
T Consensus 276 -----l~~g~~~~~al~~A~~~aa~~~~~ 299 (315)
T TIGR02198 276 -----LAAGASLEEACRLANAAAGVVVGK 299 (315)
T ss_pred -----HHcCCCHHHHHHHHHHHhhhhhcc
No 208
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=28.56 E-value=1.1e+02 Score=35.05 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=33.9
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHh-h-ccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYL-C-RKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~l-c-~~~~~v~~ 477 (487)
|+=-+.+|+|+ .+.++..+| +.+-|.+||++ ++|++|+... | +++.+|.+
T Consensus 201 P~gv~~~v~g~---~~~~~~~~~-~~~~V~FTGS~-~~G~~i~~~aaaa~~~~~~~l 252 (663)
T TIGR02278 201 PEGSLQLICGS---AGDLLDHLD-HRDVVAFTGSA-ATADRLRAHPNVLERGIRFNA 252 (663)
T ss_pred CCCcEEEEeCC---hHHHHhcCC-CCCEEEEECCH-HHHHHHHHhHhHHhcCceEEE
Confidence 44446677775 222445454 46789999976 7899999863 3 67788766
No 209
>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.
Probab=28.39 E-value=1.3e+02 Score=32.74 Aligned_cols=53 Identities=30% Similarity=0.313 Sum_probs=34.8
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|.=-+.+|.|+.-.++.-|-+=| +++-|.+||++ ++|+.|+.+..++..+|.+
T Consensus 191 P~gvv~~v~g~~~~~~~~L~~~~-~v~~V~fTGS~-~~G~~i~~~aa~~~~p~~l 243 (479)
T cd07116 191 PPGVVNVVNGFGLEAGKPLASSK-RIAKVAFTGET-TTGRLIMQYASENIIPVTL 243 (479)
T ss_pred CcCcEEEEecCchhHHHHHhcCC-CcCEEEEECCH-HHHHHHHHHHHcCCCeEEE
Confidence 44446778875432222222223 48999999987 7888888887777777765
No 210
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=28.21 E-value=1e+02 Score=31.81 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=29.5
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe---chhhhh
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK---DSRKFR 483 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~---~~~~~~ 483 (487)
-+.|+.+|++|=+|.+.+..+..+|.+|.. ++++.+
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~ 197 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVD 197 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 467999999999999999888889999876 444444
No 211
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=27.99 E-value=1.4e+02 Score=32.30 Aligned_cols=53 Identities=21% Similarity=0.203 Sum_probs=32.0
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+=-+.+|+|+.-.+.-.|-+- ++++-|++||++ ++|+.|+....++..+|.+
T Consensus 176 P~gvv~~v~g~~~~~~~~L~~~-~~v~~V~fTGs~-~~g~~v~~~aa~~~~~~~l 228 (456)
T cd07110 176 PPGVLNVVTGTGDEAGAPLAAH-PGIDKISFTGST-ATGSQVMQAAAQDIKPVSL 228 (456)
T ss_pred CCCcEEEEecCchHHHHHHhcC-CCCCEEEEECCH-HHHHHHHHHHhhcCCeEEE
Confidence 4445677777543222222222 367788888874 6777777766666667665
No 212
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=27.90 E-value=1.2e+02 Score=32.60 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=23.8
Q ss_pred EEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 428 RVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 428 rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+|+|+.-+.+.++.. | ++-|.+||++ +.|++|+....+++.++.+
T Consensus 160 ~vv~g~~~~~~~l~~~-~--v~~V~ftGs~-~~g~~i~~~a~~~~~~~~l 205 (426)
T cd07087 160 AVVEGGVEVATALLAE-P--FDHIFFTGSP-AVGKIVMEAAAKHLTPVTL 205 (426)
T ss_pred EEEeCCchHHHHHHhC-C--CCEEEEeCCh-HHHHHHHHHHHhhCCceEE
Confidence 4555544333333333 3 6666777654 4556665555445555444
No 213
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=27.66 E-value=1.3e+02 Score=32.12 Aligned_cols=53 Identities=30% Similarity=0.357 Sum_probs=27.4
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|.=-+.+|.|+.-.++--|-+-| +++-|.+||++ ++|+.|+...+++..+|.+
T Consensus 155 P~gvv~~v~g~~~~~~~~L~~~~-~i~~V~ftGs~-~~g~~v~~~aa~~~~~~~l 207 (431)
T cd07104 155 PKGVLNVVPGGGSEIGDALVEHP-RVRMISFTGST-AVGRHIGELAGRHLKKVAL 207 (431)
T ss_pred CcccEEEeeCCchhHHHHHhcCC-CCCEEEEECCH-HHHHHHHHHHhhcCCcEEE
Confidence 33345566654432222222222 56667777755 3666666666665555554
No 214
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=27.64 E-value=2.5e+02 Score=33.27 Aligned_cols=95 Identities=22% Similarity=0.342 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhcCCeEEEeccccccc--cc--ccCceeeeecCCCCceEEe--cC-CchhhHHhhhcC-CCc----cce
Q 011375 383 KQIEDAILRADRLGVKVLSLAALNKNE--SL--NGGGTLFVDKHPNLKVRVV--HG-NTCTAAVILNEL-PKD----VKE 450 (487)
Q Consensus 383 ~~ie~ai~~a~~~g~kv~sl~~ln~~~--~l--n~~g~l~~~~~p~l~~rvv--~g-~~l~~a~v~~~i-p~~----~~~ 450 (487)
..++.|+.-|+..|..+-+.=+.=.+- .+ ++|+-+=||--|.++.=.- .| ..-+++.|++.+ |++ .+=
T Consensus 402 ~~~~~a~~aa~~~gl~i~gvD~i~~di~~~~~~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~~Il~~lfp~~~~~~ipi 481 (864)
T TIGR02068 402 ENAATAVRAAKIIGLDIAGVDIVTEDISRPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVARAIVDMLFPAEDDGRIPI 481 (864)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEEecCCCCCccccCcEEEEEcCCcchhhcccccCCCCeeHHHHHHHHhcccCCCCceEE
Confidence 356677778899998888877654321 12 3445566688898876544 33 344667778777 332 356
Q ss_pred EEEeCCcch--HHHHHHHHhhccCcEEEe
Q 011375 451 VFLTGATSK--LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 451 v~l~g~~~k--~~~a~a~~lc~~~~~v~~ 477 (487)
|=.||..|| ..+-|+.-|.+.|.+|-+
T Consensus 482 I~VTGTNGKTTTt~mia~IL~~~G~~vG~ 510 (864)
T TIGR02068 482 VSVTGTNGKTTTTRLVAHILKQTGKVVGM 510 (864)
T ss_pred EEEeCCCCHhHHHHHHHHHHHHCCCcEEE
Confidence 889999999 778888888889999966
No 215
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.61 E-value=84 Score=32.47 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=38.2
Q ss_pred chhhHHhhh-----cCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 434 TCTAAVILN-----ELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 434 ~l~~a~v~~-----~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
..|+++|+. .|+-.=|+|.+.|.++=+|+.+|..|.++|..|.+
T Consensus 139 PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv 187 (284)
T PRK14179 139 PCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTL 187 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEE
Confidence 467777765 44666789999999999999999999999999999
No 216
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=27.57 E-value=1.3e+02 Score=32.44 Aligned_cols=53 Identities=32% Similarity=0.300 Sum_probs=31.1
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|.=-+.+|+|+.-.+.--|.+-| +++-|++||+ ..+|++|+....+.+.+|.+
T Consensus 173 P~g~v~~v~g~~~~~~~~L~~~~-~i~~V~ftGs-~~~g~~v~~~aa~~~~~~~l 225 (455)
T cd07093 173 PPGVVNVVHGFGPEAGAALVAHP-DVDLISFTGE-TATGRTIMRAAAPNLKPVSL 225 (455)
T ss_pred CccceEEEecCchHHHHHHhcCC-CccEEEEECC-HHHHHHHHHHHhhcccceEe
Confidence 33346667764332222222223 5777788886 56777777776666777665
No 217
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=27.47 E-value=69 Score=32.61 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=30.7
Q ss_pred HhhhcCCCccceEEEeCCc-chHHHHHHHHhhccCcEEEe
Q 011375 439 VILNELPKDVKEVFLTGAT-SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 439 ~v~~~ip~~~~~v~l~g~~-~k~~~a~a~~lc~~~~~v~~ 477 (487)
.+-....++.+.|.-.|++ |=-|.|+|.+..++|+++.+
T Consensus 47 ~l~~a~~~g~~~vv~~g~ssGN~g~alA~~a~~~G~~~~i 86 (311)
T TIGR01275 47 LLADALSKGADTVITVGAIQSNHARATALAAKKLGLDAVL 86 (311)
T ss_pred HHHHHHHcCCCEEEEcCCchhHHHHHHHHHHHHhCCceEE
Confidence 3444556677888888754 89999999888899999888
No 218
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.47 E-value=97 Score=31.98 Aligned_cols=44 Identities=25% Similarity=0.399 Sum_probs=38.1
Q ss_pred chhhHHhhh-----cCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 434 TCTAAVILN-----ELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 434 ~l~~a~v~~-----~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
..|+++|+. .|+-.=|+|...|.+.-||+-+|..|-++|..|.+
T Consensus 138 PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti 186 (281)
T PRK14183 138 PCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDI 186 (281)
T ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEE
Confidence 357777764 45777889999999999999999999999999988
No 219
>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.
Probab=27.47 E-value=1.3e+02 Score=32.85 Aligned_cols=49 Identities=22% Similarity=0.418 Sum_probs=29.6
Q ss_pred ceEEecCCch-hhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 426 KVRVVHGNTC-TAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 426 ~~rvv~g~~l-~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.+|+|+.- +.+.++ + -++++-|.+||++ .+|+.|+....++..++.+
T Consensus 194 ~~~~v~g~~~~~~~~l~-~-~~~v~~v~fTGs~-~~g~~i~~~aa~~~~~~~l 243 (475)
T cd07117 194 VVNIVTGKGSKSGEYLL-N-HPGLDKLAFTGST-EVGRDVAIAAAKKLIPATL 243 (475)
T ss_pred cEEEEecCcHHHHHHHh-c-CCCCCEEEEECcH-HHHHHHHHHHhccCCcEEE
Confidence 3566666432 222222 2 2367778888866 4577777777777777665
No 220
>COG0010 SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]
Probab=27.30 E-value=1.7e+02 Score=30.12 Aligned_cols=101 Identities=20% Similarity=0.215 Sum_probs=67.4
Q ss_pred chhhhhHHHHHHHHHHHhhcCCeEEEec-----cccccccccc-----CceeeeecCCCCce-----EEecCCchhhHHh
Q 011375 376 FAQTGINKQIEDAILRADRLGVKVLSLA-----ALNKNESLNG-----GGTLFVDKHPNLKV-----RVVHGNTCTAAVI 440 (487)
Q Consensus 376 ~~~~~in~~ie~ai~~a~~~g~kv~sl~-----~ln~~~~ln~-----~g~l~~~~~p~l~~-----rvv~g~~l~~a~v 440 (487)
-..+.--..||+++.+.-..|..++.|| .+.--..++. =|-+.++.|.+|+. |--||..+.-|.=
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~pi~lGGDHsit~~~~~a~~~~~~~~~gvI~iDAH~Dl~~~~~g~~~~Hg~p~r~~~e 161 (305)
T COG0010 82 GDLEDAVDAIEEAVAELLSAGAFPIVLGGDHSITLGTVRALARKYGGPLGVIWIDAHADLRTPYSGSGNSHGTPLRRALE 161 (305)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCeeEEECCcchhhHHHHHHHHHhhCCceEEEEEecCccCCCCCCCCCCcccCHHHHHHh
Confidence 3555566788999999999998899999 5554444333 37888899999985 8888888887772
Q ss_pred hhcCCCccceEEEeCCc-chHHHHHHHHhhccCcEEEe
Q 011375 441 LNELPKDVKEVFLTGAT-SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 441 ~~~ip~~~~~v~l~g~~-~k~~~a~a~~lc~~~~~v~~ 477 (487)
.-.++..-+.++..|.- ..-+. -..+.-++|+++..
T Consensus 162 ~~~~~~~p~~~v~iGiR~~~~~e-~~~~~~~~gi~~~~ 198 (305)
T COG0010 162 EGLIDGGPENVVQIGIRSVDPEE-RAAVARERGIRVLT 198 (305)
T ss_pred ccccCCCcceEEEEEeccCChHH-HHHHHHhcCCEEEE
Confidence 22222222566777755 11122 22344458999887
No 221
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=27.27 E-value=67 Score=34.08 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=27.7
Q ss_pred ceEEEeCCc--ch--HHHHHHHHhhcc--CcEEEe-chhhh
Q 011375 449 KEVFLTGAT--SK--LGRAIALYLCRK--RVRVLK-DSRKF 482 (487)
Q Consensus 449 ~~v~l~g~~--~k--~~~a~a~~lc~~--~~~v~~-~~~~~ 482 (487)
.-+++.|.+ || +.+|||..++++ |.+|+. +.++|
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~ 177 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF 177 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH
Confidence 458999998 88 899999999987 788877 55554
No 222
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=27.21 E-value=91 Score=32.03 Aligned_cols=88 Identities=17% Similarity=0.214 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhcCC--eEEEecccccccccccCceeeeecC--CCCceEEecCCchhhHHhhhcCCC---ccceEEEeC
Q 011375 383 KQIEDAILRADRLGV--KVLSLAALNKNESLNGGGTLFVDKH--PNLKVRVVHGNTCTAAVILNELPK---DVKEVFLTG 455 (487)
Q Consensus 383 ~~ie~ai~~a~~~g~--kv~sl~~ln~~~~ln~~g~l~~~~~--p~l~~rvv~g~~l~~a~v~~~ip~---~~~~v~l~g 455 (487)
..+++.|..|.+.|. +|+..- ..-.+.|-.| .++. -+..|.++.-|.+ +.+..++-+ |++-|.-.|
T Consensus 120 ~tv~~~l~~A~~~gk~~~V~v~E----srP~~qG~~l-a~eL~~~GI~vtlI~Dsa~--~~~m~~vd~VivGAD~I~~nG 192 (275)
T PRK08335 120 SAVLEILKTAKRKGKRFKVILTE----SAPDYEGLAL-ANELEFLGIEFEVITDAQL--GLFAKEATLALVGADNVTRDG 192 (275)
T ss_pred HHHHHHHHHHHHcCCceEEEEec----CCCchhHHHH-HHHHHHCCCCEEEEeccHH--HHHHHhCCEEEECccEEecCC
Confidence 567788888887774 566442 2223333333 3222 3567888777664 345666555 677777789
Q ss_pred Cc-chHHHHHHHHhh-ccCcEEEe
Q 011375 456 AT-SKLGRAIALYLC-RKRVRVLK 477 (487)
Q Consensus 456 ~~-~k~~~a~a~~lc-~~~~~v~~ 477 (487)
.. +|+|....-.+| +.|+.|.+
T Consensus 193 ~v~NKiGT~~lA~~Ak~~~vPfyV 216 (275)
T PRK08335 193 YVVNKAGTYLLALACHDNGVPFYV 216 (275)
T ss_pred CEeehhhHHHHHHHHHHcCCCEEE
Confidence 88 999987654444 67999988
No 223
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=27.09 E-value=43 Score=35.32 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.9
Q ss_pred eEEEeCCcchHHHHHHHHhh-ccCcEE
Q 011375 450 EVFLTGATSKLGRAIALYLC-RKRVRV 475 (487)
Q Consensus 450 ~v~l~g~~~k~~~a~a~~lc-~~~~~v 475 (487)
+..+||..||||+.|+.-|+ ++|+.+
T Consensus 223 d~i~tgdlg~vg~~i~~~ll~~~g~~~ 249 (327)
T TIGR02845 223 DLIVTGDLARVGSEILRKLLKERGYDV 249 (327)
T ss_pred cEEEecchHHHHHHHHHHHHHHcCCCh
Confidence 67999999999999999999 558765
No 224
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=27.02 E-value=2.2e+02 Score=29.92 Aligned_cols=91 Identities=18% Similarity=0.072 Sum_probs=65.7
Q ss_pred HhhcCCeEEEecc----cccccc-------cccCceeeeecCCC----------CceEEecCCc--------hh-hHHhh
Q 011375 392 ADRLGVKVLSLAA----LNKNES-------LNGGGTLFVDKHPN----------LKVRVVHGNT--------CT-AAVIL 441 (487)
Q Consensus 392 a~~~g~kv~sl~~----ln~~~~-------ln~~g~l~~~~~p~----------l~~rvv~g~~--------l~-~a~v~ 441 (487)
+.+.|.+|+.++. ++|+|+ |+++.-..|-|||+ .+|=|++|.+ |+ ...|.
T Consensus 67 ~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iviR~~~~~~~~~~a~~s~vPVINa~~~~~HPtQaL~Dl~Ti~ 146 (332)
T PRK04284 67 AYDQGAHVTYLGPTGSQMGKKESTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAK 146 (332)
T ss_pred HHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEecCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHH
Confidence 4569999999854 567776 47778888888887 4788998764 22 12344
Q ss_pred hcC-CC-ccceEEEeCCc-chHHHHHHHHhhccCcEEEe-chhhh
Q 011375 442 NEL-PK-DVKEVFLTGAT-SKLGRAIALYLCRKRVRVLK-DSRKF 482 (487)
Q Consensus 442 ~~i-p~-~~~~v~l~g~~-~k~~~a~a~~lc~~~~~v~~-~~~~~ 482 (487)
.++ .+ +-..|-+.|.. +.+++..+..|.+-|+.|.. +.+.|
T Consensus 147 e~~~g~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~ 191 (332)
T PRK04284 147 EHLKKPYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKEL 191 (332)
T ss_pred HHhcCCcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccc
Confidence 442 22 23478889986 77999999999999999998 55543
No 225
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.91 E-value=5e+02 Score=24.35 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=29.6
Q ss_pred HhhhcCCCccceEEEeCCcchHH-HHHHHHhhccCcEEEe
Q 011375 439 VILNELPKDVKEVFLTGATSKLG-RAIALYLCRKRVRVLK 477 (487)
Q Consensus 439 ~v~~~ip~~~~~v~l~g~~~k~~-~a~a~~lc~~~~~v~~ 477 (487)
.+|.+ +++++|+++|-..... .+.|.-+..+|.+|.+
T Consensus 126 ~~Lr~--~~i~~l~v~G~~td~CV~~T~~~A~~~gy~v~v 163 (205)
T COG1335 126 DILRN--LGIDTVVVCGIATDICVLATARDAFDLGYQVTL 163 (205)
T ss_pred HHHHH--CCCCEEEEeeeehhHHHHHHHHHHHHCCCeEEE
Confidence 45555 8999999999996653 5667777799999987
No 226
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=26.79 E-value=64 Score=36.63 Aligned_cols=41 Identities=17% Similarity=0.367 Sum_probs=33.1
Q ss_pred cCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe---chhhhhh
Q 011375 443 ELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK---DSRKFRK 484 (487)
Q Consensus 443 ~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~---~~~~~~~ 484 (487)
++++..+.|.+.|. |++|+.+|..|.++|++|.. ++|+-++
T Consensus 395 ~~~~~~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~ 438 (621)
T PRK03562 395 EIDEQQPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPDHIET 438 (621)
T ss_pred ccccccCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHHHHHH
Confidence 45555688999996 68999999999999999988 6666553
No 227
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=26.76 E-value=1.4e+02 Score=29.32 Aligned_cols=24 Identities=29% Similarity=0.402 Sum_probs=16.8
Q ss_pred EEeCCc-chHHHHHHHHhhccCcEEEe
Q 011375 452 FLTGAT-SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 452 ~l~g~~-~k~~~a~a~~lc~~~~~v~~ 477 (487)
..||.. .|+ .| |..+++.|++|.+
T Consensus 206 ~~tGGm~~Kl-~a-a~~a~~~Gv~v~I 230 (252)
T cd04241 206 DVTGGMAGKI-EE-LLELARRGIEVYI 230 (252)
T ss_pred cccCCHHHHH-HH-HHHHHhcCCeEEE
Confidence 355555 777 34 6677788999887
No 228
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=26.75 E-value=49 Score=34.75 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=19.8
Q ss_pred ceEEEeCCcchHHHHHHHHhh-ccCcEE
Q 011375 449 KEVFLTGATSKLGRAIALYLC-RKRVRV 475 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc-~~~~~v 475 (487)
=+..+||..||+|+.|+.-|+ ++|+.+
T Consensus 223 YDlIvTGDLg~vG~~il~~Ll~~~G~~i 250 (329)
T PF07451_consen 223 YDLIVTGDLGKVGRKILRDLLKEKGYDI 250 (329)
T ss_dssp -SEEEESS-HHHHHHHHHHHHHHTT---
T ss_pred cCeEEecchHHHHHHHHHHHHHHcCCCC
Confidence 367899999999999999999 557764
No 229
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=26.69 E-value=1.4e+02 Score=32.42 Aligned_cols=53 Identities=25% Similarity=0.234 Sum_probs=33.6
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+=-+.+|+|+.-.++-.|-+-| +++-|++||++ ++|+.|+....++..++.+
T Consensus 189 P~gv~~~v~g~~~~~~~~L~~~~-~v~~V~fTGs~-~~g~~v~~~a~~~l~~~~l 241 (467)
T TIGR01804 189 PDGVFNVVLGKGAEVGEPLVNHK-DVAKVSFTGGV-PTGKKIMAAAADHLKHVTM 241 (467)
T ss_pred CcCcEEEEeCCcHHHHHHHhcCC-CCCEEEEECcH-HHHHHHHHHHHhcCCcEEE
Confidence 44446777775333332233333 78889999976 5888888877666666665
No 230
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=26.68 E-value=49 Score=28.93 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhcCCeEEEecccc
Q 011375 383 KQIEDAILRADRLGVKVLSLAALN 406 (487)
Q Consensus 383 ~~ie~ai~~a~~~g~kv~sl~~ln 406 (487)
+.||+|+.+|+++|+| =||=+++
T Consensus 38 ~~i~~av~~A~~KG~k-esLvl~~ 60 (96)
T TIGR02530 38 KKLLEAVEEAESKGVK-DSLILMN 60 (96)
T ss_pred HHHHHHHHHHHhcCCC-ceEEEeC
Confidence 4689999999999999 5665543
No 231
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=26.65 E-value=58 Score=36.18 Aligned_cols=39 Identities=15% Similarity=0.350 Sum_probs=30.6
Q ss_pred CCCc-cceEEEeCCcchHHHHHHHHhhccCcEEEe---chhhhh
Q 011375 444 LPKD-VKEVFLTGATSKLGRAIALYLCRKRVRVLK---DSRKFR 483 (487)
Q Consensus 444 ip~~-~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~---~~~~~~ 483 (487)
+|.+ -+.|..+|. |++|+.+|..|.++|++|++ ++|+-+
T Consensus 412 ~~~~~~~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~~~~ 454 (558)
T PRK10669 412 IPVDICNHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRTRVD 454 (558)
T ss_pred cccccCCCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHH
Confidence 3444 367888886 69999999999999999988 555554
No 232
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.54 E-value=65 Score=25.56 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhcCCeEEEec
Q 011375 382 NKQIEDAILRADRLGVKVLSLA 403 (487)
Q Consensus 382 n~~ie~ai~~a~~~g~kv~sl~ 403 (487)
++.+++++..|.++|+|++++-
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 5778888999999999999986
No 233
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=26.54 E-value=77 Score=32.27 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=43.4
Q ss_pred ccCccccccchhhhhHHHHHHHHHHHhhcCCeEEEecccccccccccCceeeeecCCCCceEEecCC
Q 011375 367 RYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGN 433 (487)
Q Consensus 367 r~~~~y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p~l~~rvv~g~ 433 (487)
||+|-=--|.-.+.=++++||||.-|.+.|++.|-|+ |+-.-|=.+++.-+-|-..|-
T Consensus 80 RfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLA---------GYDVYYE~~d~eT~~rFi~g~ 137 (287)
T COG3623 80 RFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLA---------GYDVYYEEADEETRQRFIEGL 137 (287)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeec---------cceeeeccCCHHHHHHHHHHH
Confidence 5554322344455568899999999999999999776 676777778888888877774
No 234
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=26.53 E-value=1.4e+02 Score=32.09 Aligned_cols=53 Identities=32% Similarity=0.281 Sum_probs=32.3
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+=-+.+|.|+.-.+.-.|-+-| +++-|.+||.+ ++|++|+....+++.+|.+
T Consensus 175 P~~vv~~v~g~~~~~~~~l~~~~-~i~~V~ftGs~-~~g~~v~~~aa~~~~~~~l 227 (457)
T cd07114 175 PPGVVNVVTGFGPETGEALVEHP-LVAKIAFTGGT-ETGRHIARAAAENLAPVTL 227 (457)
T ss_pred CCCcEEEEeCCCchHHHHHhcCC-CCCEEEEECCH-HHHHHHHHHHHhcCCeEEE
Confidence 44456677765433322233333 66778888844 6777777777777777765
No 235
>PLN02503 fatty acyl-CoA reductase 2
Probab=26.43 E-value=46 Score=37.85 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.0
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccC
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKR 472 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~ 472 (487)
.-+.||+||+||=||.+++..|.|.+
T Consensus 118 ~~k~VlVTGaTGFLGk~LlekLLr~~ 143 (605)
T PLN02503 118 RGKNFLITGATGFLAKVLIEKILRTN 143 (605)
T ss_pred cCCEEEEcCCchHHHHHHHHHHHHhC
Confidence 46789999999999999999998753
No 236
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=26.38 E-value=66 Score=33.88 Aligned_cols=58 Identities=21% Similarity=0.085 Sum_probs=36.6
Q ss_pred ccccccccCceeeeecCCCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 406 NKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 406 n~~~~ln~~g~l~~~~~p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
=|.|.+|.+|. -|.| -+.+.+..-..++.+.|+..+.+|=-|+|+|.+-.+.|+++.+
T Consensus 54 ~K~E~~nptgS--------~K~R------~a~~~~~~a~~~g~~~vv~~~ssGN~g~alA~~a~~~G~~~~i 111 (365)
T cd06446 54 LKREDLNHTGA--------HKIN------NALGQALLAKRMGKKRVIAETGAGQHGVATATACALFGLECEI 111 (365)
T ss_pred EEeccCCCccc--------hhHH------HHHHHHHHHHHcCCCeEEEecCchHHHHHHHHHHHHhCCCeEE
Confidence 36677776664 2444 1222233233566677776334445999999988899999887
No 237
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=26.22 E-value=80 Score=33.96 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=25.6
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccC-cEEEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKR-VRVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~-~~v~~ 477 (487)
.-+.|.+.|+ |++|+.+|.+|+++| -+|.+
T Consensus 179 ~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v 209 (417)
T TIGR01035 179 KGKKALLIGA-GEMGELVAKHLLRKGVGKILI 209 (417)
T ss_pred cCCEEEEECC-hHHHHHHHHHHHHCCCCEEEE
Confidence 3468999997 999999999999999 56766
No 238
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=26.13 E-value=1e+02 Score=29.87 Aligned_cols=48 Identities=17% Similarity=0.091 Sum_probs=32.6
Q ss_pred hhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe-chhhhh
Q 011375 435 CTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK-DSRKFR 483 (487)
Q Consensus 435 l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~-~~~~~~ 483 (487)
++.+.+.+.+|.+-.+|+++|..+= -+++..+|-++|++--- ..|.|+
T Consensus 196 ~~~~~l~~~~~~~~~~v~icGp~~m-~~~v~~~l~~~G~~~~~i~~e~f~ 244 (247)
T cd06184 196 IDLALLRELLLPADADFYLCGPVPF-MQAVREGLKALGVPAERIHYEVFG 244 (247)
T ss_pred cCHHHHhhccCCCCCEEEEECCHHH-HHHHHHHHHHcCCCHHHeeeeccC
Confidence 3445555546666689999999974 48888899888985221 445554
No 239
>PLN02467 betaine aldehyde dehydrogenase
Probab=25.99 E-value=1.5e+02 Score=32.80 Aligned_cols=53 Identities=26% Similarity=0.237 Sum_probs=35.4
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+=-+.+|.|+.-.++.-|-+ .++++-|.+||++ .+|++|+....++..+|.+
T Consensus 207 P~gvv~~v~g~~~~~~~~L~~-~~~v~~v~fTGs~-~~g~~v~~~aa~~~~~~~l 259 (503)
T PLN02467 207 PPGVLNVVTGLGTEAGAPLAS-HPGVDKIAFTGST-ATGRKIMTAAAQMVKPVSL 259 (503)
T ss_pred CcCeEEEEeCCchhHHHHHhc-CCCCCEEEEECCH-HHHHHHHHHHhccCCcEEE
Confidence 444577888764333322322 3478889999965 6788888887777777776
No 240
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=25.96 E-value=2.3e+02 Score=29.60 Aligned_cols=92 Identities=18% Similarity=0.320 Sum_probs=56.2
Q ss_pred hhhhHHHHHHHHHHHhhcCCeEEEe-----ccccc----------ccccccCceeee-ecCCCCceEEecCCchhhHHhh
Q 011375 378 QTGINKQIEDAILRADRLGVKVLSL-----AALNK----------NESLNGGGTLFV-DKHPNLKVRVVHGNTCTAAVIL 441 (487)
Q Consensus 378 ~~~in~~ie~ai~~a~~~g~kv~sl-----~~ln~----------~~~ln~~g~l~~-~~~p~l~~rvv~g~~l~~a~v~ 441 (487)
.-++|..|-.++..|.+.|.+|++. |++|. ..-+|.||+..- .|.|+.+ + .---..++
T Consensus 12 apGmNa~i~~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~----~--~~~~~~~~ 85 (317)
T cd00763 12 APGMNAAIRGVVRSAIAEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLGSARFPEFK----D--EEGQAKAI 85 (317)
T ss_pred cHHHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeeccCCCCccC----C--HHHHHHHH
Confidence 4589999999999999999999975 66663 122355665433 5544433 1 00111222
Q ss_pred hcC-CCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 442 NEL-PKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 442 ~~i-p~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.+ -.+.+.++..|..+.+. .|..|.+.|++|+-
T Consensus 86 ~~l~~~~Id~Li~IGGdgs~~--~a~~L~e~~i~vig 120 (317)
T cd00763 86 EQLKKHGIDALVVIGGDGSYM--GAMRLTEHGFPCVG 120 (317)
T ss_pred HHHHHcCCCEEEEECCchHHH--HHHHHHHcCCCEEE
Confidence 222 23777888888886653 33456666888764
No 241
>PRK08304 stage V sporulation protein AD; Validated
Probab=25.94 E-value=46 Score=35.19 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.7
Q ss_pred eEEEeCCcchHHHHHHHHhh-ccCcEE
Q 011375 450 EVFLTGATSKLGRAIALYLC-RKRVRV 475 (487)
Q Consensus 450 ~v~l~g~~~k~~~a~a~~lc-~~~~~v 475 (487)
+..+||..||||+.|+.-|+ ++|+.+
T Consensus 229 Dli~tGDlg~vG~~i~~~ll~~~g~~~ 255 (337)
T PRK08304 229 DLIVTGDLGRVGREILKELLKEEGYDI 255 (337)
T ss_pred cEEEEcchHHHHHHHHHHHHHHhCCCh
Confidence 67899999999999999999 557754
No 242
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=25.90 E-value=1.2e+02 Score=28.70 Aligned_cols=47 Identities=19% Similarity=0.124 Sum_probs=33.4
Q ss_pred cCCchhhHHhhhcC-CCccceEEEeCCc--ch--HHHHHHHHhhccCcEEEe
Q 011375 431 HGNTCTAAVILNEL-PKDVKEVFLTGAT--SK--LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 431 ~g~~l~~a~v~~~i-p~~~~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~ 477 (487)
+++.-+-..+-+.+ .+...-|+|+|.+ || ++++++.+++++|..+..
T Consensus 20 ~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~ 71 (226)
T TIGR03420 20 GGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIY 71 (226)
T ss_pred CCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEE
Confidence 34544444333333 3445679999998 89 999999999998888776
No 243
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=25.84 E-value=1.3e+02 Score=32.21 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=18.3
Q ss_pred CccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 446 KDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 446 ~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
++++-|.+||+++ +|+.|+....++..+|.+
T Consensus 173 ~~i~~v~fTGs~~-~g~~i~~~aa~~~~~~~l 203 (429)
T cd07100 173 PRVRGVTLTGSER-AGRAVAAEAGKNLKKSVL 203 (429)
T ss_pred CCCCEEEEECcHH-HHHHHHHHHhhcCcceEE
Confidence 3566666777654 666666665555555544
No 244
>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.
Probab=25.82 E-value=1.4e+02 Score=32.94 Aligned_cols=53 Identities=26% Similarity=0.275 Sum_probs=36.4
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhc------cCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCR------KRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~------~~~~v~~ 477 (487)
|+=-+.+|.|..-.++-.|-+-| +++-|.+||++ ++|++|+....+ +..+|.+
T Consensus 222 P~gvv~vv~g~~~~~~~~L~~~~-~v~~V~fTGs~-~~g~~i~~~aa~~~~~~~~l~~~~l 280 (512)
T cd07124 222 PPGVVNFLPGPGEEVGDYLVEHP-DVRFIAFTGSR-EVGLRIYERAAKVQPGQKWLKRVIA 280 (512)
T ss_pred CCCceEEeccCchHHHHHHhcCC-CCCEEEEeCch-HHHHHHHHHHhcccccccCCCcEEE
Confidence 44457788886433333343333 78889999988 479999988776 4677766
No 245
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=25.67 E-value=89 Score=32.42 Aligned_cols=87 Identities=18% Similarity=0.238 Sum_probs=50.0
Q ss_pred HHHHHHHHhhcC--CeEEEecccccccccccCceeeeecC--CCCceEEecCCchhhHHhhh--cCCC---ccceEEEeC
Q 011375 385 IEDAILRADRLG--VKVLSLAALNKNESLNGGGTLFVDKH--PNLKVRVVHGNTCTAAVILN--ELPK---DVKEVFLTG 455 (487)
Q Consensus 385 ie~ai~~a~~~g--~kv~sl~~ln~~~~ln~~g~l~~~~~--p~l~~rvv~g~~l~~a~v~~--~ip~---~~~~v~l~g 455 (487)
.++.++.|.+.| .+|+.. .....|.|+.+.+++. -+..+.++.-|. ++.+.. ++-+ |++-|+-.|
T Consensus 139 v~~~l~~A~~~g~~~~V~v~----EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa--~~~~m~~~~vd~VlvGAd~v~~nG 212 (303)
T TIGR00524 139 ALGVIRSAWEDGKRIRVIAC----ETRPRNQGSRLTAWELMQDGIDVTLITDSM--AAYFMQKGEIDAVIVGADRIARNG 212 (303)
T ss_pred HHHHHHHHHHcCCceEEEEC----CCCCccchHHHHHHHHHHCCCCEEEEChhH--HHHHccccCCCEEEEcccEEecCC
Confidence 344444454443 344433 2223344435544433 345666665443 344455 5554 677777788
Q ss_pred Cc-chHHHHHHHHhh-ccCcEEEe
Q 011375 456 AT-SKLGRAIALYLC-RKRVRVLK 477 (487)
Q Consensus 456 ~~-~k~~~a~a~~lc-~~~~~v~~ 477 (487)
.. +|+|....-.+| ..|+.|.+
T Consensus 213 ~v~nk~GT~~lA~~Ak~~~vPv~V 236 (303)
T TIGR00524 213 DVANKIGTYQLAVLAKEFRIPFFV 236 (303)
T ss_pred CEeEhhhHHHHHHHHHHhCCCEEE
Confidence 88 999998776665 56999988
No 246
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=25.52 E-value=93 Score=31.26 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcC-Ce--EEEecccccccc-cccCceeeeecCCCCceEEec----CCchhhHHhhhcCCC-ccceEEEe
Q 011375 384 QIEDAILRADRLG-VK--VLSLAALNKNES-LNGGGTLFVDKHPNLKVRVVH----GNTCTAAVILNELPK-DVKEVFLT 454 (487)
Q Consensus 384 ~ie~ai~~a~~~g-~k--v~sl~~ln~~~~-ln~~g~l~~~~~p~l~~rvv~----g~~l~~a~v~~~ip~-~~~~v~l~ 454 (487)
.+++|...-.+.| ++ |+++|.- +-- .++++.. +.|..++++|| |++.+||.+.--+-. +.+
T Consensus 204 ~~~~a~~~l~~~~~~~~vvvT~G~~--G~~~~~~~~~~---~~~~~~v~vvDttGAGDaf~ag~l~~l~~g~~~~----- 273 (309)
T PRK10294 204 DVRKAAQELVNSGKAKRVVVSLGPQ--GALGVDSENCI---QVVPPPVKSQSTVGAGDSMVGAMTLKLAENASLE----- 273 (309)
T ss_pred HHHHHHHHHHHcCCCCEEEEecCCC--ceEEEcCCccE---EEeCCCcccCCCcchHHHHHHHHHHHHHcCCCHH-----
Confidence 3555544333334 54 6777762 211 2333322 23444788999 999998866543211 111
Q ss_pred CCcchHHHHHHHHhh-ccCcEE
Q 011375 455 GATSKLGRAIALYLC-RKRVRV 475 (487)
Q Consensus 455 g~~~k~~~a~a~~lc-~~~~~v 475 (487)
..-|.|.|.|..-| ++|.++
T Consensus 274 -~al~~a~a~aa~~v~~~G~~~ 294 (309)
T PRK10294 274 -EMVRFGVAAGSAATLNQGTRL 294 (309)
T ss_pred -HHHHHHHHHHHHHhcCCCCCC
Confidence 13688888887777 557774
No 247
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=25.35 E-value=1.6e+02 Score=32.16 Aligned_cols=30 Identities=27% Similarity=0.213 Sum_probs=21.3
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+++.|++||++ +.|++|+....++..+|.+
T Consensus 219 ~vd~v~fTGS~-~~G~~i~~~aa~~~~~~~l 248 (481)
T TIGR03216 219 GVDAITFTGET-RTGSAIMKAAADGVKPVSF 248 (481)
T ss_pred CCCEEEEECCH-HHHHHHHHHHhcCCCeEEE
Confidence 67777888866 6777777766666666655
No 248
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=25.31 E-value=97 Score=33.67 Aligned_cols=38 Identities=32% Similarity=0.566 Sum_probs=29.4
Q ss_pred CCccceEEEeCCc--ch--HHHHHHHHhhcc--CcEEEe-chhhh
Q 011375 445 PKDVKEVFLTGAT--SK--LGRAIALYLCRK--RVRVLK-DSRKF 482 (487)
Q Consensus 445 p~~~~~v~l~g~~--~k--~~~a~a~~lc~~--~~~v~~-~~~~~ 482 (487)
|...+-+|+.|.+ || +..|||.++.++ +.+|+. +.++|
T Consensus 127 ~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f 171 (440)
T PRK14088 127 PGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_pred cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 5445679999998 88 899999999875 678876 55554
No 249
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=25.19 E-value=82 Score=34.28 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=26.3
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.-+.|++.|+ |++|.-+|.+|+++|++.++
T Consensus 177 ~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~ 206 (414)
T COG0373 177 KDKKVLVIGA-GEMGELVAKHLAEKGVKKIT 206 (414)
T ss_pred ccCeEEEEcc-cHHHHHHHHHHHhCCCCEEE
Confidence 5678999997 69999999999999987766
No 250
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=25.13 E-value=68 Score=30.09 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=42.3
Q ss_pred CCce-EEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhcc--CcEEEe
Q 011375 424 NLKV-RVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRK--RVRVLK 477 (487)
Q Consensus 424 ~l~~-rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~--~~~v~~ 477 (487)
+.++ .-|+|+.|+-++.- ...+.-+.|||-|++-.+....+..|.++ |++|.-
T Consensus 24 g~~~~~rv~g~dl~~~l~~-~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg 79 (172)
T PF03808_consen 24 GRPLPERVTGSDLFPDLLR-RAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVG 79 (172)
T ss_pred CCCCCcccCHHHHHHHHHH-HHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3444 67899999887654 55555569999999999999999999988 899886
No 251
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=25.00 E-value=3.2e+02 Score=27.76 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=25.1
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCc-EEEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRV-RVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~-~v~~ 477 (487)
.-+.|+++| .|-+|.+++..+..+|+ +|..
T Consensus 177 ~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~ 207 (361)
T cd08231 177 AGDTVVVQG-AGPLGLYAVAAAKLAGARRVIV 207 (361)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEE
Confidence 445788888 58999999988889999 8876
No 252
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=24.97 E-value=1.5e+02 Score=33.93 Aligned_cols=52 Identities=25% Similarity=0.379 Sum_probs=36.2
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+=-+.+|.|+.=++..++. .++++-|++||++ .+|+.|+....++..+|.+
T Consensus 305 P~GvvnvV~G~~~~~~~L~~--~~~Vd~V~FTGSt-~vG~~I~~~Aa~~lk~v~L 356 (604)
T PLN02419 305 PDGVLNIVHGTNDTVNAICD--DEDIRAVSFVGSN-TAGMHIYARAAAKGKRIQS 356 (604)
T ss_pred CcceEEEEeCChHHHHHHHh--CCCCCEEEEeCCh-HHHHHHHHHHhccCCcEEE
Confidence 44456788886423332221 4588899999987 7888898877777888876
No 253
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=24.96 E-value=26 Score=37.35 Aligned_cols=103 Identities=30% Similarity=0.329 Sum_probs=72.9
Q ss_pred eeEEeeccCccccccchhhhh-----------HHHHHHHHHHHhhcCCeEEEecccccccccccCceeeeecCCCCceEE
Q 011375 361 QTWAVPRYGFQYFLPFAQTGI-----------NKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRV 429 (487)
Q Consensus 361 ~~w~~pr~~~~y~~~~~~~~i-----------n~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p~l~~rv 429 (487)
+||+|=|||+.-.||..-+=| ...|++||.-|.+.||-+.++|-+-+---- .|.|.-.|--.-+|||
T Consensus 37 Ht~aI~r~Gir~lLP~~ielisGPGCPVCVtp~~~ID~ai~La~~~~vi~~TfGDmlRVPGs--~~SL~~ara~GadVri 114 (364)
T PRK15062 37 HTHAIFRYGLRSLLPENIELIHGPGCPVCVTPMGRIDAAIELASRPGVILCTFGDMLRVPGS--KGSLLEAKAEGADVRI 114 (364)
T ss_pred chHHHHHhChHhhCCCCcEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEeccccccCCCC--cCCHHHHHhCCCCEEE
Confidence 899999999988888766654 588999999999999999999988775443 4577778888889999
Q ss_pred ecCCchhhHHhhhcCCCccceEEEeCCc-chHHHHHHHHh
Q 011375 430 VHGNTCTAAVILNELPKDVKEVFLTGAT-SKLGRAIALYL 468 (487)
Q Consensus 430 v~g~~l~~a~v~~~ip~~~~~v~l~g~~-~k~~~a~a~~l 468 (487)
|-. .|=|--+-.+-|. |||.+-|-. -=-+=++|..+
T Consensus 115 VYS-pldAl~iA~~nP~--k~vVF~avGFETTaP~~A~~i 151 (364)
T PRK15062 115 VYS-PLDALKIARENPD--KEVVFFAIGFETTAPATAATL 151 (364)
T ss_pred EeC-HHHHHHHHHHCCC--CeEEEEecCchhccHHHHHHH
Confidence 963 4444444444443 455555543 22334444444
No 254
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=24.84 E-value=2.7e+02 Score=28.86 Aligned_cols=96 Identities=25% Similarity=0.323 Sum_probs=69.1
Q ss_pred HHHHHHHHhhcCCeEEEecc----cccccc-------cccC-ceeeeecCCCC----------ceEEecCCc--------
Q 011375 385 IEDAILRADRLGVKVLSLAA----LNKNES-------LNGG-GTLFVDKHPNL----------KVRVVHGNT-------- 434 (487)
Q Consensus 385 ie~ai~~a~~~g~kv~sl~~----ln~~~~-------ln~~-g~l~~~~~p~l----------~~rvv~g~~-------- 434 (487)
.|.|+ .+.|.+++.|+. ++|+|+ |+++ .-..|-|+|+- +|-|++|-+
T Consensus 63 Fe~A~---~~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ 139 (305)
T PRK00856 63 FELAA---KRLGADVINFSASTSSVSKGETLADTIRTLSAMGADAIVIRHPQSGAARLLAESSDVPVINAGDGSHQHPTQ 139 (305)
T ss_pred HHHHH---HHcCCcEEEeCCCcccCCCCcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHHHHCCCCEEECCCCCCCCcHH
Confidence 45554 478999999864 677776 4666 77788888764 888998833
Q ss_pred -hh-hHHhhhcCCC-ccceEEEeCCc--chHHHHHHHHhhccCcEEEe-chhhhh
Q 011375 435 -CT-AAVILNELPK-DVKEVFLTGAT--SKLGRAIALYLCRKRVRVLK-DSRKFR 483 (487)
Q Consensus 435 -l~-~a~v~~~ip~-~~~~v~l~g~~--~k~~~a~a~~lc~~~~~v~~-~~~~~~ 483 (487)
|+ ...+..+... +-..|-+.|.. |-+++..+..+.+-|+.|.. +.+.|+
T Consensus 140 ~LaDl~Ti~e~~G~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~ 194 (305)
T PRK00856 140 ALLDLLTIREEFGRLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLL 194 (305)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccC
Confidence 11 2234444332 23489999988 89999999999999999999 777775
No 255
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=24.82 E-value=1.4e+02 Score=32.18 Aligned_cols=50 Identities=26% Similarity=0.334 Sum_probs=33.9
Q ss_pred CCCceEEecCCchh-hHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCT-AAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~-~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+=-+.+|.|..-. ...++.. .+-|.+||++ ++|++|+....++.++|.+
T Consensus 174 P~gv~~~v~g~~~~~~~~l~~~----~~~V~fTGs~-~~g~~i~~~aa~~~~~~~l 224 (454)
T cd07101 174 PRDLWQVVTGPGSEVGGAIVDN----ADYVMFTGST-ATGRVVAERAGRRLIGCSL 224 (454)
T ss_pred CCCcEEEEeCCcHHHHHHHHhC----CCEEEEECCH-HHHHHHHHHHHhcCCcEEE
Confidence 44457788885433 2333332 3569999976 6899999888888788766
No 256
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=24.80 E-value=1.6e+02 Score=31.96 Aligned_cols=50 Identities=36% Similarity=0.380 Sum_probs=29.0
Q ss_pred ceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 426 KVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 426 ~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.+|+|+.-.++-.|-+ .++++-|.+||++ +.|++|+....+++.++.+
T Consensus 194 vv~~v~g~~~~~~~~L~~-~~~vd~V~ftGs~-~~g~~i~~~aa~~~~~~~l 243 (478)
T cd07131 194 VVNVVHGRGEEVGEALVE-HPDVDVVSFTGST-EVGERIGETCARPNKRVAL 243 (478)
T ss_pred cEEEEecCchHHHHHHhc-CCCCCEEEEECcH-HHHHHHHHHHhhcCCcEEE
Confidence 366777654322222222 2367778888865 5677777666666666655
No 257
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=24.77 E-value=1e+02 Score=31.93 Aligned_cols=88 Identities=15% Similarity=0.232 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhcC--CeEEEecccccccccccCceeeeecC--CCCceEEecCCchhhHHhhhcCCC---ccceEEEeC
Q 011375 383 KQIEDAILRADRLG--VKVLSLAALNKNESLNGGGTLFVDKH--PNLKVRVVHGNTCTAAVILNELPK---DVKEVFLTG 455 (487)
Q Consensus 383 ~~ie~ai~~a~~~g--~kv~sl~~ln~~~~ln~~g~l~~~~~--p~l~~rvv~g~~l~~a~v~~~ip~---~~~~v~l~g 455 (487)
+.+++.+++|-+.| .+|+..- ..-.|. |.+..++. -+..+.++.-| +++.++.++-+ |++-|+-.|
T Consensus 126 ~tv~~~l~~a~~~~~~f~V~v~E----srP~~~-G~~~a~~L~~~gI~vtlI~Ds--a~~~~m~~vd~VivGad~v~~nG 198 (301)
T TIGR00511 126 EAALSVIKTAFEQGKDIEVIATE----TRPRKQ-GHITAKELRDYGIPVTLIVDS--AVRYFMKEVDHVVVGADAITANG 198 (301)
T ss_pred HHHHHHHHHHHHcCCcEEEEEec----CCCcch-HHHHHHHHHHCCCCEEEEehh--HHHHHHHhCCEEEECccEEecCC
Confidence 45555555554433 3444331 222222 24444333 34567777655 34445666665 677777789
Q ss_pred Cc-chHHHHHHHHhh-ccCcEEEe
Q 011375 456 AT-SKLGRAIALYLC-RKRVRVLK 477 (487)
Q Consensus 456 ~~-~k~~~a~a~~lc-~~~~~v~~ 477 (487)
.. +|+|....-.+| +.|+.|.+
T Consensus 199 ~v~nkiGT~~lA~~Ak~~~vPv~V 222 (301)
T TIGR00511 199 ALINKIGTSQLALAAREARVPFMV 222 (301)
T ss_pred CEEEHHhHHHHHHHHHHhCCCEEE
Confidence 88 999987665555 55999887
No 258
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=24.67 E-value=55 Score=28.16 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.6
Q ss_pred cchhhhhHHHHHHHHHHHhhcCCeE
Q 011375 375 PFAQTGINKQIEDAILRADRLGVKV 399 (487)
Q Consensus 375 ~~~~~~in~~ie~ai~~a~~~g~kv 399 (487)
|.+.+.+-++|+||=.|=.++|+||
T Consensus 67 peA~~eL~~eI~eAK~dLr~kGv~~ 91 (91)
T PF08285_consen 67 PEAAKELQKEIKEAKADLRKKGVDV 91 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 6678888899999999999999885
No 259
>PLN02884 6-phosphofructokinase
Probab=24.61 E-value=2e+02 Score=31.26 Aligned_cols=89 Identities=21% Similarity=0.422 Sum_probs=57.2
Q ss_pred hhhhHHHHHHHHHHHhhcCC-eEEEe-----cccccc--c------cc----ccCceee-eecCCCCceEEecCCchhhH
Q 011375 378 QTGINKQIEDAILRADRLGV-KVLSL-----AALNKN--E------SL----NGGGTLF-VDKHPNLKVRVVHGNTCTAA 438 (487)
Q Consensus 378 ~~~in~~ie~ai~~a~~~g~-kv~sl-----~~ln~~--~------~l----n~~g~l~-~~~~p~l~~rvv~g~~l~~a 438 (487)
.-|+|..|..++..|..+|+ +|++. |++|.+ + .+ +.||++. ..|.+. .. .
T Consensus 65 aPGmNa~Iravv~~a~~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~--------~~---~ 133 (411)
T PLN02884 65 CPGLNDVIRQIVFTLEIYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLGVSRGGA--------KT---S 133 (411)
T ss_pred CccHhHHHHHHHHHHHHcCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCceeccCCCCc--------cH---H
Confidence 35899999999999999999 79964 777765 1 11 3455543 344432 11 2
Q ss_pred HhhhcCC-CccceEEEeCCcchH--HHHHHHHhhccC--cEEEe
Q 011375 439 VILNELP-KDVKEVFLTGATSKL--GRAIALYLCRKR--VRVLK 477 (487)
Q Consensus 439 ~v~~~ip-~~~~~v~l~g~~~k~--~~a~a~~lc~~~--~~v~~ 477 (487)
-+++.+- .+.+.++..|..+-+ +..++.+..++| ++|+-
T Consensus 134 ~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIG 177 (411)
T PLN02884 134 DIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVG 177 (411)
T ss_pred HHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEe
Confidence 2333332 478889999988655 444555655678 77764
No 260
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain). This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.
Probab=24.61 E-value=1.6e+02 Score=32.62 Aligned_cols=53 Identities=19% Similarity=0.339 Sum_probs=32.7
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccC---cEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKR---VRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~---~~v~~ 477 (487)
|+=-+.+|.|..-.+.-.|-+- ++++-|.+||++ ++|+.|+..+.++. .+|.+
T Consensus 216 P~gvv~~v~g~~~~~~~~l~~~-~~v~~V~ftGs~-~~g~~v~~~aa~~~~~~~~v~l 271 (500)
T TIGR01238 216 PAGTIQLLPGRGADVGAALTSD-PRIAGVAFTGST-EVAQLINQTLAQREDAPVPLIA 271 (500)
T ss_pred CCCceEEEecCcchHHHHHhcC-CCcCeEEEECCH-HHHHHHHHHHhhcccCCceEEE
Confidence 5445777877542222222222 367888888876 67788887777664 56654
No 261
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=24.54 E-value=46 Score=34.21 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=24.9
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCc-EEEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRV-RVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~-~v~~ 477 (487)
.-+.|.+.|+ |++|+.+|.+|+++|. +|.+
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v 207 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITI 207 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEE
Confidence 4567999998 9999999999999775 5555
No 262
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.49 E-value=66 Score=33.92 Aligned_cols=41 Identities=29% Similarity=0.321 Sum_probs=34.4
Q ss_pred hHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 437 AAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 437 ~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.....-..|+....|+.||.+|=+|.|+|.-+.++|-.|.+
T Consensus 22 ~~~~~~~~~k~~~hi~itggS~glgl~la~e~~~~ga~Vti 62 (331)
T KOG1210|consen 22 DHRSFIVKPKPRRHILITGGSSGLGLALALECKREGADVTI 62 (331)
T ss_pred HHHhhhcccCccceEEEecCcchhhHHHHHHHHHccCceEE
Confidence 33334455777799999999999999999999999999988
No 263
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=24.42 E-value=1.5e+02 Score=28.95 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=26.8
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.|++.|+++=+|.+++..+..+|.+|..
T Consensus 144 ~~vlV~ga~g~~g~~~~~~a~~~g~~v~~ 172 (320)
T cd08243 144 DTLLIRGGTSSVGLAALKLAKALGATVTA 172 (320)
T ss_pred CEEEEEcCCChHHHHHHHHHHHcCCEEEE
Confidence 68999999999999999999999999887
No 264
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=24.39 E-value=2.6e+02 Score=29.47 Aligned_cols=92 Identities=23% Similarity=0.330 Sum_probs=65.4
Q ss_pred HhhcCCeEEE-ec----ccccccc-------cccCceeeeecCCCC----------ceEEecCCc---------hh-hHH
Q 011375 392 ADRLGVKVLS-LA----ALNKNES-------LNGGGTLFVDKHPNL----------KVRVVHGNT---------CT-AAV 439 (487)
Q Consensus 392 a~~~g~kv~s-l~----~ln~~~~-------ln~~g~l~~~~~p~l----------~~rvv~g~~---------l~-~a~ 439 (487)
+.+.|.+++. ++ .+.|+|+ |+++.-..|-|||.- +|=|++|-+ |+ ...
T Consensus 66 ~~~LGg~~i~~~~~~~s~~~kgEsl~Dtarvls~y~D~IviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQaLaDl~T 145 (338)
T PRK08192 66 FNLLGGHVRETTGMASSSLSKGESLYDTARVLSTYSDVIAMRHPDAGSVKEFAEGSRVPVINGGDGSNEHPTQALLDLFT 145 (338)
T ss_pred HHHcCCcEEeecCcccccCCCCCCHHHHHHHHHHcCCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHH
Confidence 5678999997 34 3677776 467788888888865 577888643 22 234
Q ss_pred hhhcCC-----CccceEEEeCCc--chHHHHHHHHhhcc-CcEEEe-chhhhh
Q 011375 440 ILNELP-----KDVKEVFLTGAT--SKLGRAIALYLCRK-RVRVLK-DSRKFR 483 (487)
Q Consensus 440 v~~~ip-----~~~~~v~l~g~~--~k~~~a~a~~lc~~-~~~v~~-~~~~~~ 483 (487)
|..+.+ -+-..|-+.|.. +++++..+..||+. |+.|.. +.+.|+
T Consensus 146 i~e~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~ 198 (338)
T PRK08192 146 IQKELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELA 198 (338)
T ss_pred HHHHhhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCcccc
Confidence 444431 123588999998 89999999999955 999988 777664
No 265
>PRK09850 pseudouridine kinase; Provisional
Probab=24.28 E-value=1.2e+02 Score=30.67 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhcCCe--EEEecccccc-cccccCceeeeecCCCCceEEec----CCchhhHHhhhcCCC-ccceEEEe
Q 011375 383 KQIEDAILRADRLGVK--VLSLAALNKN-ESLNGGGTLFVDKHPNLKVRVVH----GNTCTAAVILNELPK-DVKEVFLT 454 (487)
Q Consensus 383 ~~ie~ai~~a~~~g~k--v~sl~~ln~~-~~ln~~g~l~~~~~p~l~~rvv~----g~~l~~a~v~~~ip~-~~~~v~l~ 454 (487)
..+|++...-.+.|+| |+++|. ++ --.+++|+.. ..|..++++|| |++.+|+.+.--+-. +.+|
T Consensus 203 ~~~~~~~~~l~~~g~~~vvvT~G~--~G~~~~~~~~~~~--~~~~~~~~vvDttGAGDaF~agfi~~l~~g~~~~e---- 274 (313)
T PRK09850 203 EDVAKVAAWFHQHGLNRLVLSMGG--DGVYYSDISGESG--WSAPIKTNVINVTGAGDAMMAGLASCWVDGMPFAE---- 274 (313)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCC--ceEEEEcCCCCeE--ecCCCCcccccCCCcHHHHHHHHHHHHHcCCCHHH----
Confidence 3466776666678876 677774 21 1122233211 24666889999 999988876543311 1111
Q ss_pred CCcchHHHHHHHHhhcc
Q 011375 455 GATSKLGRAIALYLCRK 471 (487)
Q Consensus 455 g~~~k~~~a~a~~lc~~ 471 (487)
.-|.|.|.|.+-|+.
T Consensus 275 --al~~a~a~aa~~~~~ 289 (313)
T PRK09850 275 --SVRFAQGCSSMALSC 289 (313)
T ss_pred --HHHHHHHHHHHHhcC
Confidence 257788887776653
No 266
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=24.24 E-value=36 Score=23.62 Aligned_cols=11 Identities=55% Similarity=0.703 Sum_probs=9.4
Q ss_pred hhcCCeEEEec
Q 011375 393 DRLGVKVLSLA 403 (487)
Q Consensus 393 ~~~g~kv~sl~ 403 (487)
+..|-||+|||
T Consensus 19 eD~GPKv~~lg 29 (30)
T PF07492_consen 19 EDTGPKVLSLG 29 (30)
T ss_pred ecCCCeEEecc
Confidence 56899999998
No 267
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=24.20 E-value=87 Score=26.69 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=27.9
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCcEEEe-chh
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRVRVLK-DSR 480 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~-~~~ 480 (487)
.-+.|++.|. |++|..=+..|-+.|-+|.+ +++
T Consensus 6 ~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCc
Confidence 3467889987 89999999999999999999 555
No 268
>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.
Probab=24.00 E-value=1.6e+02 Score=31.92 Aligned_cols=53 Identities=32% Similarity=0.329 Sum_probs=30.0
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhc-cCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCR-KRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~-~~~~v~~ 477 (487)
|.=-+.+|.|+.-.+.-.|.+- ++++-|.+||++ ++|+.|+.+..+ ...+|.+
T Consensus 180 P~g~v~~v~g~~~~~~~~l~~~-~~v~~V~fTGs~-~~g~~i~~~aa~~~~~~~~l 233 (462)
T cd07112 180 PAGVLNVVPGFGHTAGEALGLH-MDVDALAFTGST-EVGRRFLEYSGQSNLKRVWL 233 (462)
T ss_pred CCCcEEEEeCCCchHHHHHhcC-CCcCEEEEECCH-HHHHHHHHHHHHhcCCEEEe
Confidence 4444666776443222222222 367778888875 477777776663 4555544
No 269
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=23.99 E-value=2.9e+02 Score=31.99 Aligned_cols=86 Identities=23% Similarity=0.285 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhhcCCeEEEecccccccccccCceeeeec--------------CCCCceEEecC-CchhhHHhhhcCCC
Q 011375 382 NKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDK--------------HPNLKVRVVHG-NTCTAAVILNELPK 446 (487)
Q Consensus 382 n~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~~~--------------~p~l~~rvv~g-~~l~~a~v~~~ip~ 446 (487)
...+++++.+-.+.|-+++.++- | ++ -=|.+..+- .-+.++.++.| |..||+.|-+++.
T Consensus 411 ~~~~~~~~~~~a~~G~r~l~va~-~-~~---~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lG- 484 (675)
T TIGR01497 411 PTDLDQAVDQVARQGGTPLVVCE-D-NR---IYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAG- 484 (675)
T ss_pred cHHHHHHHHHHHhCCCeEEEEEE-C-CE---EEEEEEecccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcC-
Confidence 35677778777889999988873 1 11 112332221 22468999999 7889999999985
Q ss_pred ccceEEEeCCc--chHHHHHHHHhhccCcEEEe
Q 011375 447 DVKEVFLTGAT--SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~--~k~~~a~a~~lc~~~~~v~~ 477 (487)
.++| +.+.+ +|+ .+...||++|-.|.|
T Consensus 485 -I~~v-~a~~~PedK~--~~v~~lq~~g~~Vam 513 (675)
T TIGR01497 485 -VDDF-IAEATPEDKI--ALIRQEQAEGKLVAM 513 (675)
T ss_pred -CCEE-EcCCCHHHHH--HHHHHHHHcCCeEEE
Confidence 4454 46775 897 344667999988988
No 270
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=23.98 E-value=68 Score=30.25 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHhhcCCeEE-Eec
Q 011375 379 TGINKQIEDAILRADRLGVKVL-SLA 403 (487)
Q Consensus 379 ~~in~~ie~ai~~a~~~g~kv~-sl~ 403 (487)
..-++.+|....+|||.|.||. +|+
T Consensus 61 ~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 61 MPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred CCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 3456899999999999999985 443
No 271
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=23.97 E-value=4.5e+02 Score=31.25 Aligned_cols=93 Identities=23% Similarity=0.244 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhcCCeEEEecccc--cc---------cccccCceeeeecC--------------CCCceEEecCCch-h
Q 011375 383 KQIEDAILRADRLGVKVLSLAALN--KN---------ESLNGGGTLFVDKH--------------PNLKVRVVHGNTC-T 436 (487)
Q Consensus 383 ~~ie~ai~~a~~~g~kv~sl~~ln--~~---------~~ln~~g~l~~~~~--------------p~l~~rvv~g~~l-~ 436 (487)
+.|++.+.+-.+.|-+|+.+|--+ .. +.|.==|-+-..-- -+.||+++.|+.. |
T Consensus 465 ~~i~~~~~~~a~~G~rvlavA~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~t 544 (867)
T TIGR01524 465 SELQDMTAEMNRQGIRVIAVATKTLKVGEADFTKTDEEQLIIEGFLGFLDPPKESTKEAIAALFKNGINVKVLTGDNEIV 544 (867)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEeccCcccccccccccCCcEEEEEEEeeCCCchhHHHHHHHHHHCCCEEEEEcCCCHHH
Confidence 457777777788999999999621 11 11111122222221 2568889999764 6
Q ss_pred hHHhhhcCCCccceE----------------------EEeCCc--chHHHHHHHHhhccCcEEEe
Q 011375 437 AAVILNELPKDVKEV----------------------FLTGAT--SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 437 ~a~v~~~ip~~~~~v----------------------~l~g~~--~k~~~a~a~~lc~~~~~v~~ 477 (487)
|..|-+++.=+.++| .+.+.+ .|. .|..+|-++|-.|.|
T Consensus 545 A~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~--~iV~~lq~~G~vVam 607 (867)
T TIGR01524 545 TARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFARLTPMQKS--RIIGLLKKAGHTVGF 607 (867)
T ss_pred HHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHH--HHHHHHHhCCCEEEE
Confidence 667777775432221 122223 554 566677788888888
No 272
>KOG2774 consensus NAD dependent epimerase [General function prediction only]
Probab=23.97 E-value=65 Score=32.94 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=30.3
Q ss_pred hhhcCCCccc--eEEEeCCcchHHHHHHHHhhcc-CcEEEe
Q 011375 440 ILNELPKDVK--EVFLTGATSKLGRAIALYLCRK-RVRVLK 477 (487)
Q Consensus 440 v~~~ip~~~~--~v~l~g~~~k~~~a~a~~lc~~-~~~v~~ 477 (487)
=.+++|.+++ .|+.||+.|.+|+..|..|-.+ |-+-++
T Consensus 34 ~FH~~s~~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VI 74 (366)
T KOG2774|consen 34 RFHTISQTQKAPRVLITGSLGQLGRGLASLLRYMYGSECVI 74 (366)
T ss_pred ccccccccCCCCeEEEecchHHHhHHHHHHHHHHhCCccEe
Confidence 3678888665 8999999999999999988744 655544
No 273
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=23.79 E-value=1.8e+02 Score=29.11 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.3
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcE-EEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVR-VLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~-v~~ 477 (487)
+.|+++|+ |-+|.+++..+.++|++ |..
T Consensus 167 ~~VlV~g~-g~vg~~~~~la~~~g~~~v~~ 195 (343)
T cd08235 167 DTVLVIGA-GPIGLLHAMLAKASGARKVIV 195 (343)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCcEEEE
Confidence 57888884 77999999988899999 655
No 274
>PRK10565 putative carbohydrate kinase; Provisional
Probab=23.71 E-value=1.1e+02 Score=33.92 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=28.6
Q ss_pred HhhhcCCCccceEEEeCCc--chHHHHHHHHhhccCcEEEe
Q 011375 439 VILNELPKDVKEVFLTGAT--SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 439 ~v~~~ip~~~~~v~l~g~~--~k~~~a~a~~lc~~~~~v~~ 477 (487)
.|.+..|+..+=++++|.. |==|.++|.+|.++|++|.+
T Consensus 52 ~i~~~~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~V~v 92 (508)
T PRK10565 52 VARSAYPDARHWLVLCGHGNNGGDGYVVARLAQAAGIDVTL 92 (508)
T ss_pred HHHHhcCCCCeEEEEEcCCCchHHHHHHHHHHHHCCCceEE
Confidence 4455566544445666654 77899999999999999887
No 275
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=23.61 E-value=1.4e+02 Score=32.37 Aligned_cols=34 Identities=35% Similarity=0.554 Sum_probs=28.0
Q ss_pred ceEEEeCCc--ch--HHHHHHHHhhcc--CcEEEe-chhhh
Q 011375 449 KEVFLTGAT--SK--LGRAIALYLCRK--RVRVLK-DSRKF 482 (487)
Q Consensus 449 ~~v~l~g~~--~k--~~~a~a~~lc~~--~~~v~~-~~~~~ 482 (487)
+-+++.|.+ || +.+|||..++++ |.+|.. +.++|
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~ 189 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF 189 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 568999998 88 899999999988 888876 54443
No 276
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=23.60 E-value=83 Score=31.55 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=25.7
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.|.+-|- ||||++.|.+|-++|.+|+-
T Consensus 32 g~~v~IqGf-G~VG~~~a~~l~~~Ga~vv~ 60 (244)
T PF00208_consen 32 GKRVAIQGF-GNVGSHAARFLAELGAKVVA 60 (244)
T ss_dssp TCEEEEEES-SHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEE
Confidence 467888887 99999999999999999876
No 277
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=23.60 E-value=91 Score=24.26 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=10.5
Q ss_pred HHHHHH-HHhhcCCeEE
Q 011375 385 IEDAIL-RADRLGVKVL 400 (487)
Q Consensus 385 ie~ai~-~a~~~g~kv~ 400 (487)
+|++|. .||++|++-.
T Consensus 20 ~~~~la~kAd~~GA~~y 36 (56)
T PF07338_consen 20 AEEALAKKADEKGAKYY 36 (56)
T ss_dssp HHHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 455555 8999998743
No 278
>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like. NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.
Probab=23.57 E-value=1.5e+02 Score=32.03 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=29.1
Q ss_pred ceEEecCCchh-hHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 426 KVRVVHGNTCT-AAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 426 ~~rvv~g~~l~-~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.+|.|..-. ...+++. ++++-|.+||++ ++|+.|+.+..++..+|.+
T Consensus 190 vv~~v~g~~~~~~~~l~~~--~~v~~v~fTGs~-~~g~~i~~~aa~~~~~~~l 239 (465)
T cd07151 190 VLNVVVGAGSEIGDAFVEH--PVPRLISFTGST-PVGRHIGELAGRHLKKVAL 239 (465)
T ss_pred ceEEEecCchhhHHHHhcC--CCCCEEEEECCH-HHHHHHHHHHHhcCCcEEE
Confidence 35667664322 2222221 457888999966 4677777776666666655
No 279
>PLN02621 nicotinamidase
Probab=23.56 E-value=6.3e+02 Score=23.92 Aligned_cols=32 Identities=28% Similarity=0.218 Sum_probs=27.2
Q ss_pred CccceEEEeCCc-chHHHHHHHHhhccCcEEEe
Q 011375 446 KDVKEVFLTGAT-SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 446 ~~~~~v~l~g~~-~k~~~a~a~~lc~~~~~v~~ 477 (487)
.+.++++++|-. +--=...|..+.++|++|.+
T Consensus 125 ~gi~~lvi~Gv~T~~CV~~Ta~~a~~~gy~v~v 157 (197)
T PLN02621 125 IGVKEVIVTGVMTNLCCETTAREAFVRGFRVFF 157 (197)
T ss_pred CCCCEEEEEecccchhHHHHHHHHHHCCCEEEE
Confidence 478999999988 55457778999999999998
No 280
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=23.52 E-value=2.3e+02 Score=28.37 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.9
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.|++.|++|=+|.+++..+..+|.+|..
T Consensus 178 g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~ 207 (350)
T cd08274 178 GETVLVTGASGGVGSALVQLAKRRGAIVIA 207 (350)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhcCCEEEE
Confidence 368999999999999999988899999877
No 281
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=23.46 E-value=1.2e+02 Score=23.72 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=20.7
Q ss_pred EEEeCCc--ch--HHHHHHHHhhccCcEEEe
Q 011375 451 VFLTGAT--SK--LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 451 v~l~g~~--~k--~~~a~a~~lc~~~~~v~~ 477 (487)
++++|+. || +.+.+|..|.++|.+|+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~ 32 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLL 32 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 3555553 55 889999999999999976
No 282
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=23.44 E-value=1.7e+02 Score=31.95 Aligned_cols=48 Identities=29% Similarity=0.397 Sum_probs=26.8
Q ss_pred eEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 427 VRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 427 ~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.+|+|+.-+.+.+. + .++++-|.+||++ .+|++|+.+..++..+|.+
T Consensus 197 v~~v~g~~~~~~~L~-~-~~~vd~v~fTGs~-~~g~~i~~~aa~~~~~~~l 244 (478)
T cd07086 197 VNLVTGGGDGGELLV-H-DPRVPLVSFTGST-EVGRRVGETVARRFGRVLL 244 (478)
T ss_pred eEEEecCchhHHHHh-c-CCCCCEEEEECcH-HHHHHHHHHHhccCCcEEe
Confidence 556666443222222 1 3456677777765 4566666666666666554
No 283
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=23.25 E-value=1e+02 Score=30.40 Aligned_cols=83 Identities=19% Similarity=0.204 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcCCe--EEEecccccccccccCceeeeecCCCCceEEec----CCchhhHHhhhcCCC-ccceEEEeCCc
Q 011375 385 IEDAILRADRLGVK--VLSLAALNKNESLNGGGTLFVDKHPNLKVRVVH----GNTCTAAVILNELPK-DVKEVFLTGAT 457 (487)
Q Consensus 385 ie~ai~~a~~~g~k--v~sl~~ln~~~~ln~~g~l~~~~~p~l~~rvv~----g~~l~~a~v~~~ip~-~~~~v~l~g~~ 457 (487)
++++.....++|+| |++.|. +-..-.++++ .+ +.|-.++.+|| |++++|+.+..-+-. +..+ .
T Consensus 196 ~~~~~~~l~~~g~~~vvvt~G~-~g~~~~~~~~-~~--~~~~~~~~~vdt~GAGDaf~Ag~l~~l~~g~~~~~------a 265 (293)
T TIGR02152 196 AEKAAEKLLEKGVKNVIITLGS-KGALLVSKDE-SK--LIPAFKVKAVDTTAAGDTFNGAFAVALAEGKSLED------A 265 (293)
T ss_pred HHHHHHHHHHcCCCeEEEEeCC-CceEEEeCCc-ee--EccCCCCceeCCCCcHHHHHHHHHHHHHCCCCHHH------H
Confidence 45555556667887 445544 1111123332 22 34666778999 999999988754311 1111 1
Q ss_pred chHHHHHHHHhhc-cCcEEEe
Q 011375 458 SKLGRAIALYLCR-KRVRVLK 477 (487)
Q Consensus 458 ~k~~~a~a~~lc~-~~~~v~~ 477 (487)
=+.|.+.|..-|+ .|-+.-+
T Consensus 266 l~~a~~~Aa~~~~~~G~~~~~ 286 (293)
T TIGR02152 266 IRFANAAAAISVTRKGAQSSI 286 (293)
T ss_pred HHHHHHHHHHHHcccCcccCC
Confidence 3788888877774 4665533
No 284
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=23.18 E-value=1.7e+02 Score=31.94 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=28.7
Q ss_pred ceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 426 KVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 426 ~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.+|+|+.-++. .|-+ -++++-|++||++ ++|+.|+....++..+|.+
T Consensus 201 ~v~~v~g~~~~~~-~L~~-~~~vd~V~fTGS~-~~g~~i~~~aa~~l~~~~l 249 (488)
T PRK13252 201 VFNVVQGDGRVGA-WLTE-HPDIAKVSFTGGV-PTGKKVMAAAAASLKEVTM 249 (488)
T ss_pred cEEEEecCcHHHH-HHhc-CCCCCEEEEECcH-HHHHHHHHHHhhcCCcEEE
Confidence 4566766543222 2222 2367777888865 5677777766666566654
No 285
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=23.09 E-value=1.8e+02 Score=31.62 Aligned_cols=49 Identities=29% Similarity=0.400 Sum_probs=31.1
Q ss_pred ceEEecCCch-hhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 426 KVRVVHGNTC-TAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 426 ~~rvv~g~~l-~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.+|.|+.- +...++.. ++++-|.+||++ .+|++|+....++..+|.+
T Consensus 194 vv~vv~g~~~~~~~~l~~~--~~v~~v~fTGs~-~~g~~i~~~aa~~~~~~~l 243 (473)
T cd07097 194 VFNLVMGSGSEVGQALVEH--PDVDAVSFTGST-AVGRRIAAAAAARGARVQL 243 (473)
T ss_pred ceEEeccCchHHHHHHhcC--CCCCEEEEECcH-HHHHHHHHHHhccCCcEEE
Confidence 4667777532 22222221 477888888866 5778888877777777765
No 286
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=23.02 E-value=85 Score=31.97 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=26.2
Q ss_pred CCccceEEEeC-CcchHHHHHHHHhhccCcEEEe
Q 011375 445 PKDVKEVFLTG-ATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 445 p~~~~~v~l~g-~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-++.+.|.-.| ++|=-|.|+|.+..++|+++.+
T Consensus 49 ~~g~~~vv~~ggs~GN~g~alA~~a~~~G~~~~i 82 (307)
T cd06449 49 AKGADTLVTVGGIQSNHTRQVAAVAAKLGLKCVL 82 (307)
T ss_pred HcCCCEEEECCCchhHHHHHHHHHHHHcCCeEEE
Confidence 35566666665 4589999999988899999888
No 287
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=22.96 E-value=1.5e+02 Score=29.51 Aligned_cols=33 Identities=9% Similarity=0.224 Sum_probs=27.8
Q ss_pred CCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 444 LPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 444 ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
++++ +.|++.|+++-+|.+++..+.++|++|..
T Consensus 138 ~~~g-~~vlI~g~~g~ig~~~~~lak~~G~~v~~ 170 (327)
T PRK10754 138 IKPD-EQFLFHAAAGGVGLIACQWAKALGAKLIG 170 (327)
T ss_pred CCCC-CEEEEEeCCcHHHHHHHHHHHHcCCEEEE
Confidence 4443 68889999999999999888899999877
No 288
>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins. Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress.
Probab=22.91 E-value=1.7e+02 Score=31.54 Aligned_cols=48 Identities=21% Similarity=0.427 Sum_probs=33.8
Q ss_pred ceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 426 KVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 426 ~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+-+|+|+.-+...++. + +++.|.+||++ .+|+.|+....++..+|.+
T Consensus 159 vv~~v~g~~~~~~~L~~--~-~i~~v~fTGs~-~~g~~v~~~aa~~~~~~~l 206 (432)
T cd07137 159 AIKVIEGGVPETTALLE--Q-KWDKIFFTGSP-RVGRIIMAAAAKHLTPVTL 206 (432)
T ss_pred eEEEEeCCHHHHHHHHh--C-CCCEEEEECCh-HHHHHHHHHHHhcCCcEEE
Confidence 46788886444444444 3 48889999976 5688888777677777766
No 289
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=22.91 E-value=87 Score=25.62 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.7
Q ss_pred CcchHHHHHHHHhhccC---cEEEe
Q 011375 456 ATSKLGRAIALYLCRKR---VRVLK 477 (487)
Q Consensus 456 ~~~k~~~a~a~~lc~~~---~~v~~ 477 (487)
.+|++|.|++..|.+.| -+|.+
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~ 30 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVII 30 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEe
Confidence 35899999999999999 89985
No 290
>PRK06696 uridine kinase; Validated
Probab=22.90 E-value=1.4e+02 Score=28.91 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=30.3
Q ss_pred CCCccceEEEeCCc--ch--HHHHHHHHhhccCcEEEe-chhhhh
Q 011375 444 LPKDVKEVFLTGAT--SK--LGRAIALYLCRKRVRVLK-DSRKFR 483 (487)
Q Consensus 444 ip~~~~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~-~~~~~~ 483 (487)
-+++..=|.++|.+ || +++.+|..|-+.|..|.. +.|.|.
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 35556677788877 77 899999999888988886 655554
No 291
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=22.85 E-value=1.2e+02 Score=33.53 Aligned_cols=41 Identities=17% Similarity=0.042 Sum_probs=30.0
Q ss_pred hHHhhhcCCCc--cceEEEeCCc--chHHHHHHHHhhccCcEEEe
Q 011375 437 AAVILNELPKD--VKEVFLTGAT--SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 437 ~a~v~~~ip~~--~~~v~l~g~~--~k~~~a~a~~lc~~~~~v~~ 477 (487)
|..|.+..|+. .+=++|+|.. |==|.++|.+|.++|++|.+
T Consensus 47 a~~i~~~~~~~~~~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v 91 (462)
T PLN03049 47 ASAIAEVYSPSEYRRVLALCGPGNNGGDGLVAARHLHHFGYKPSI 91 (462)
T ss_pred HHHHHHhcccccCCEEEEEECCCCCHHHHHHHHHHHHHCCCceEE
Confidence 34456666763 3445777765 77899999999999999877
No 292
>TIGR01230 agmatinase agmatinase. Note: a history of early misannotation of members of this family is detailed in PUBMED:10931887.
Probab=22.82 E-value=2.1e+02 Score=28.84 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=61.5
Q ss_pred hhhhHHHHHHHHHHHhhcCCeEEEec-----------ccccccccccCceeeeecCCCCceEEecCCchhhHHhhhcCCC
Q 011375 378 QTGINKQIEDAILRADRLGVKVLSLA-----------ALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAVILNELPK 446 (487)
Q Consensus 378 ~~~in~~ie~ai~~a~~~g~kv~sl~-----------~ln~~~~ln~~g~l~~~~~p~l~~rvv~g~~l~~a~v~~~ip~ 446 (487)
-+...+.|++++.+.-+.|...+.|| ++.+.. .+=|-+.++.|++++-- .+|+.+..+..+..+-.
T Consensus 75 ~~~~~~~i~~~v~~~~~~~~~pi~lGGdHsis~~~i~al~~~~--~~~~vI~~DAH~D~~~~-~~g~~~~~~~~~~~~~~ 151 (275)
T TIGR01230 75 AREMFEKIQEHAEEFLEEGKFPVAIGGEHSITLPVIRAMAKKF--GKFAVVHFDAHTDLRDE-FDGGTLNHACPMRRVIE 151 (275)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEecCcchhhHHHHHHHHHhc--CCeEEEEEecccccccc-cCCCccccHhHHHHHhh
Confidence 45677889999999999999999886 233321 24588999999999842 46776655655544432
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
.-+.|+..|.-+- ...=..+..+.|+++..
T Consensus 152 ~~~~iv~iGiR~~-~~~e~~~~~~~~~~~~~ 181 (275)
T TIGR01230 152 LGLNVVQFGIRSG-FKEENDFARENNIQVLK 181 (275)
T ss_pred CCCCEEEEEeCCC-ChHHHHHHHHcCCEEEe
Confidence 2246677776531 12222344566777764
No 293
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=22.77 E-value=1.5e+02 Score=33.94 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=30.6
Q ss_pred eEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHh-h-ccCcEEEe
Q 011375 427 VRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYL-C-RKRVRVLK 477 (487)
Q Consensus 427 ~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~l-c-~~~~~v~~ 477 (487)
+.+|.|+ +..++..+| +++-|.+||++ ++|+.|+.+. | ++..+|.+
T Consensus 209 ~~vv~g~---~~~~~~~~~-~i~~v~FTGS~-~~G~~i~~~~~a~~~~~~~~l 256 (675)
T PRK11563 209 LQLICGS---AGDLLDHLD-GQDVVTFTGSA-ATAQKLRAHPNVVANSVPFTA 256 (675)
T ss_pred EEEeeCC---HHHHhhcCC-CCCEEEEECcH-HHHHHHHhhhhhhhCCceEEE
Confidence 5566665 122444444 57899999965 7899998853 2 66777765
No 294
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=22.76 E-value=3.9e+02 Score=31.99 Aligned_cols=93 Identities=20% Similarity=0.182 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhcCCeEEEeccccc-------cccccc----Cceeeee--------------cCCCCceEEecCCc-hh
Q 011375 383 KQIEDAILRADRLGVKVLSLAALNK-------NESLNG----GGTLFVD--------------KHPNLKVRVVHGNT-CT 436 (487)
Q Consensus 383 ~~ie~ai~~a~~~g~kv~sl~~ln~-------~~~ln~----~g~l~~~--------------~~p~l~~rvv~g~~-l~ 436 (487)
+.|++++.+-.+.|-+|++++--+- .+..++ =|-+-+. |.=+.||+++.|+. .|
T Consensus 529 ~~i~~~~~~~a~~G~Rvl~~A~~~~~~~~~~~~~~~e~~l~~lGli~~~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~t 608 (941)
T TIGR01517 529 DRCADVIEPLASDALRTICLAYRDFAPEEFPRKDYPNGGLTLIGVVGIKDPLRPGVREAVQECQRAGITVRMVTGDNIDT 608 (941)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCccccccccccccCcEEEEEeeccCCCchhHHHHHHHHHHCCCEEEEECCCChHH
Confidence 4577777777789999999996431 111111 1222222 12246889999985 56
Q ss_pred hHHhhhcCCCcc-ce-----------------------EEEeCCc--chHHHHHHHHhhccCcEEEe
Q 011375 437 AAVILNELPKDV-KE-----------------------VFLTGAT--SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 437 ~a~v~~~ip~~~-~~-----------------------v~l~g~~--~k~~~a~a~~lc~~~~~v~~ 477 (487)
|..|-+++.=.. ++ ..+.+.+ .|. .|...|-++|-.|.|
T Consensus 609 A~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K~--~iV~~lq~~g~vVam 673 (941)
T TIGR01517 609 AKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDKQ--LLVLMLKDMGEVVAV 673 (941)
T ss_pred HHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHHH--HHHHHHHHCCCEEEE
Confidence 667777763211 01 2333444 564 567778888888888
No 295
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=22.76 E-value=1.3e+02 Score=28.69 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCCccceEEEeCCcchHHHHHHHHhhccCcE
Q 011375 444 LPKDVKEVFLTGATSKLGRAIALYLCRKRVR 474 (487)
Q Consensus 444 ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~ 474 (487)
++.+-.+|+++|.. ..-+++..+|.++|+.
T Consensus 189 ~~~~~~~v~icGp~-~m~~~~~~~l~~~G~~ 218 (228)
T cd06209 189 LNDGDVDVYLCGPP-PMVDAVRSWLDEQGIE 218 (228)
T ss_pred ccCCCcEEEEeCCH-HHHHHHHHHHHHcCCC
Confidence 44444579999966 5669999999999984
No 296
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.74 E-value=98 Score=32.08 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=38.1
Q ss_pred chhhHHhhh-----cCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 434 TCTAAVILN-----ELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 434 ~l~~a~v~~-----~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
..|+++|+. .|+-.-|+|.+.|.+.=||+-+|..|-++|..|.+
T Consensus 140 PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVti 188 (288)
T PRK14171 140 PCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTI 188 (288)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEE
Confidence 567777765 34667789999999999999999999999999998
No 297
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=22.69 E-value=65 Score=28.12 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=31.7
Q ss_pred EeeccCccccccchhhhhHHHHHHHHH-HHhhcCCeEEEecc
Q 011375 364 AVPRYGFQYFLPFAQTGINKQIEDAIL-RADRLGVKVLSLAA 404 (487)
Q Consensus 364 ~~pr~~~~y~~~~~~~~in~~ie~ai~-~a~~~g~kv~sl~~ 404 (487)
++.+|...=++...++.|++.|++.+. ++++.|++|.+...
T Consensus 66 ~~~~~~~~e~i~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~i 107 (124)
T cd03400 66 VTGRYTAEQIYSTKRKEIESAIKKELIEEFVGDGLILEEVLL 107 (124)
T ss_pred HhcCCCHHHHhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEE
Confidence 455666654554478999999999888 68889999999754
No 298
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=22.64 E-value=1.4e+02 Score=29.49 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=25.5
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCcE---EEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRVR---VLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~~---v~~ 477 (487)
.-+.|++.|+ |-.|++||..|++.|++ |.+
T Consensus 24 ~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~i 56 (226)
T cd05311 24 EEVKIVINGA-GAAGIAIARLLLAAGAKPENIVV 56 (226)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEE
Confidence 3468999998 78999999999999985 766
No 299
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=22.63 E-value=1.6e+02 Score=29.62 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=27.7
Q ss_pred CCCc-cceEEEeCCcchHHHHHHHHhhccCc-EEEe
Q 011375 444 LPKD-VKEVFLTGATSKLGRAIALYLCRKRV-RVLK 477 (487)
Q Consensus 444 ip~~-~~~v~l~g~~~k~~~a~a~~lc~~~~-~v~~ 477 (487)
+.++ -+.|+++|++|=+|.+.+..+..+|. +|..
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~ 185 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVG 185 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEE
Confidence 4443 26799999999999999888888898 7876
No 300
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.52 E-value=1.4e+02 Score=30.98 Aligned_cols=44 Identities=18% Similarity=0.371 Sum_probs=37.9
Q ss_pred chhhHHhhh-----cCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 434 TCTAAVILN-----ELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 434 ~l~~a~v~~-----~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
..|+++|+. .|+-.=|+|.+.|.+.=||+-+|..|-++|.+|.+
T Consensus 139 PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~ 187 (285)
T PRK14189 139 PCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTI 187 (285)
T ss_pred CCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence 357777764 45677799999999999999999999999999988
No 301
>PRK13912 nuclease NucT; Provisional
Probab=22.48 E-value=92 Score=29.30 Aligned_cols=50 Identities=30% Similarity=0.416 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhcCCeEEEecccccccccccCc--eeeeecCCCCceEEecCCc
Q 011375 383 KQIEDAILRADRLGVKVLSLAALNKNESLNGGG--TLFVDKHPNLKVRVVHGNT 434 (487)
Q Consensus 383 ~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g--~l~~~~~p~l~~rvv~g~~ 434 (487)
+-|-+|+.+|-++||+|==+-- .....|... .-|..+.|+++++..+|-.
T Consensus 59 ~~i~~aL~~Aa~RGV~VrIlld--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (177)
T PRK13912 59 KDIAKALKSAAKRGVKISIIYD--YESNHNNDQSTIGYLDKYPNIKVCLLKGLK 110 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEEe--CccccCcchhHHHHHHhCCCceEEEecCcc
Confidence 4588888899999999865532 211111111 1256677888888877653
No 302
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=22.25 E-value=1.6e+02 Score=31.44 Aligned_cols=54 Identities=30% Similarity=0.361 Sum_probs=33.4
Q ss_pred CCCceEEecCCchhhHHhhhcC--CCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNEL--PKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~i--p~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+=-+.+|+|..=....+.+.+ .++++.|++||++ ++|++|+....+++.+|.+
T Consensus 154 P~gv~~~v~g~~~~~~~~~~~l~~~~~v~~v~ftGs~-~~g~~i~~~aa~~~~~~~l 209 (432)
T cd07105 154 PKGVLNVVTHSPEDAPEVVEALIAHPAVRKVNFTGST-RVGRIIAETAAKHLKPVLL 209 (432)
T ss_pred CCCcEEEEeCCCCchHHHHHHHhcCCCCCEEEEECCH-HHHHHHHHHHHhcCCeEEE
Confidence 4445667776421111122222 3567888999955 6788888887777777766
No 303
>cd07135 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins. Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD.
Probab=22.24 E-value=1.8e+02 Score=31.49 Aligned_cols=47 Identities=30% Similarity=0.458 Sum_probs=29.3
Q ss_pred ceEEecCCc-hhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 426 KVRVVHGNT-CTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 426 ~~rvv~g~~-l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.+|.|+. -+.+ ++.. | ++.|.+||++ .+|+.|+....+++.+|.+
T Consensus 166 ~v~vv~g~~~~~~~-l~~~-~--vd~v~ftGs~-~~g~~i~~~aa~~~~~~~l 213 (436)
T cd07135 166 AFQVVQGGVPETTA-LLEQ-K--FDKIFYTGSG-RVGRIIAEAAAKHLTPVTL 213 (436)
T ss_pred EEEEEcCCchhHHH-HHhC-C--CCEEEEECCc-HHHHHHHHHHHhcCCCeEE
Confidence 356777643 2333 3332 4 7888888887 6777777765566666655
No 304
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=22.22 E-value=2.8e+02 Score=28.03 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=27.7
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
..+.|++.|+++=+|.+++..+..+|++|..
T Consensus 154 ~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~ 184 (339)
T cd08249 154 KGKPVLIWGGSSSVGTLAIQLAKLAGYKVIT 184 (339)
T ss_pred CCCEEEEEcChhHHHHHHHHHHHHcCCeEEE
Confidence 3468999999999999999999999999888
No 305
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=22.22 E-value=1.5e+02 Score=25.06 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=20.2
Q ss_pred CccceEEEeCCcchHHHH--HHHHhhccCcEEEe
Q 011375 446 KDVKEVFLTGATSKLGRA--IALYLCRKRVRVLK 477 (487)
Q Consensus 446 ~~~~~v~l~g~~~k~~~a--~a~~lc~~~~~v~~ 477 (487)
++.|.|+.+|++|=.|.| ||.+- .-|...+-
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aF-g~gA~TiG 69 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAF-GAGADTIG 69 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHH-CC--EEEE
T ss_pred CCCceEEEEecCCcccHHHHHHHHh-cCCCCEEE
Confidence 577899999999988888 66554 55555544
No 306
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=22.21 E-value=2.1e+02 Score=31.06 Aligned_cols=30 Identities=33% Similarity=0.366 Sum_probs=15.5
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+++-|.+||++ ++|+.|+.+..++..+|.+
T Consensus 209 ~v~~v~fTGs~-~~g~~i~~~aa~~~~~v~l 238 (466)
T cd07138 209 DVDMVSFTGST-RAGKRVAEAAADTVKRVAL 238 (466)
T ss_pred CCCEEEEECcH-HHHHHHHHHHhccCCeEEE
Confidence 45555566643 4555555554444445444
No 307
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=22.16 E-value=89 Score=35.29 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=30.1
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCcEEEe---chhhhh
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRVRVLK---DSRKFR 483 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~---~~~~~~ 483 (487)
..+.|.++| .|++|+.+|..|-++|++|++ ++|+-+
T Consensus 399 ~~~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v~ 437 (601)
T PRK03659 399 DKPQVIIVG-FGRFGQVIGRLLMANKMRITVLERDISAVN 437 (601)
T ss_pred ccCCEEEec-CchHHHHHHHHHHhCCCCEEEEECCHHHHH
Confidence 346899999 579999999999999999998 666555
No 308
>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase. The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH.
Probab=22.14 E-value=1.8e+02 Score=32.36 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=31.5
Q ss_pred ceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHh--hccCcEEEe
Q 011375 426 KVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYL--CRKRVRVLK 477 (487)
Q Consensus 426 ~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~l--c~~~~~v~~ 477 (487)
-+.+|.|+. +.+...+| +++-|.+||++ ++|+.|+... .+++.+|.+
T Consensus 204 v~~~v~g~~---~~~~~~l~-~~d~v~fTGS~-~~G~~i~~~a~~a~~~~~~~l 252 (513)
T cd07128 204 ALQLICGSV---GDLLDHLG-EQDVVAFTGSA-ATAAKLRAHPNIVARSIRFNA 252 (513)
T ss_pred cEEEecCCh---HHHhcccC-CCCEEEEECCH-HHHHHHHHHhhhhccCceEEE
Confidence 355666652 12444444 56789999987 6899998864 367788775
No 309
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=22.03 E-value=1.8e+02 Score=31.68 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=13.4
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCcEE
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRVRV 475 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~~v 475 (487)
+++-|++||++ ++|+.|+....++-.++
T Consensus 214 ~vd~V~fTGs~-~~g~~i~~~aa~~~~~~ 241 (474)
T cd07130 214 RVPLVSFTGST-AVGRQVGQAVAARFGRS 241 (474)
T ss_pred CCCEEEEECch-HHHHHHHHHHHhcCCCE
Confidence 45555555554 34555554444443333
No 310
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=22.00 E-value=92 Score=25.55 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhcCCeEEEe
Q 011375 382 NKQIEDAILRADRLGVKVLSL 402 (487)
Q Consensus 382 n~~ie~ai~~a~~~g~kv~sl 402 (487)
++++++|+..|++.|.||...
T Consensus 41 ~~L~~~~l~~a~~~~~kv~p~ 61 (78)
T PF14542_consen 41 KKLVEAALDYARENGLKVVPT 61 (78)
T ss_dssp HHHHHHHHHHHHHTT-EEEET
T ss_pred HHHHHHHHHHHHHCCCEEEEE
Confidence 688899999999999999865
No 311
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=21.93 E-value=1.1e+02 Score=32.24 Aligned_cols=97 Identities=19% Similarity=0.154 Sum_probs=67.9
Q ss_pred eEEeeeecCCcceeeEEeeccCc-cccccchhhhhHHHHHHHHHHHhhcCCeEEEecccccccccccCceeeeecCCCCc
Q 011375 348 FLISFYWLRGRLHQTWAVPRYGF-QYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLK 426 (487)
Q Consensus 348 f~~~~~~~~~~~~~~w~~pr~~~-~y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p~l~ 426 (487)
=.+..-+..+...--||+--.|+ .|.+-.+. |..-+ + .. ...+..-
T Consensus 81 ~~Vv~S~~~~f~~GD~V~~~~GWq~y~i~~~~-----------------~l~Kv-----d------~~-----~~pl~~~ 127 (340)
T COG2130 81 AKVVASNHPGFQPGDIVVGVSGWQEYAISDGE-----------------GLRKL-----D------PS-----PAPLSAY 127 (340)
T ss_pred EEEEecCCCCCCCCCEEEecccceEEEeechh-----------------hceec-----C------CC-----CCCcchH
Confidence 34555567788888999999998 45543222 11111 1 00 1123334
Q ss_pred eEEecCCchhhHHhhhcC--CCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 427 VRVVHGNTCTAAVILNEL--PKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 427 ~rvv~g~~l~~a~v~~~i--p~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+-|.-...+||-.-|..| ||+=+-|+.+||++=||..+..--.-||-||+=
T Consensus 128 LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVG 180 (340)
T COG2130 128 LGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVG 180 (340)
T ss_pred HhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEE
Confidence 556778899999999999 899899999999999988776655578999986
No 312
>PRK06110 hypothetical protein; Provisional
Probab=21.83 E-value=79 Score=32.58 Aligned_cols=28 Identities=11% Similarity=0.181 Sum_probs=23.7
Q ss_pred eEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 450 EVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 450 ~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.+.+..+|-.|+|+|.+-.+.|+++.+
T Consensus 71 ~~vv~aSsGN~g~alA~~a~~~G~~~~i 98 (322)
T PRK06110 71 RGVISATRGNHGQSVAFAARRHGLAATI 98 (322)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 3467777799999999988899999887
No 313
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=21.82 E-value=1.8e+02 Score=32.49 Aligned_cols=53 Identities=26% Similarity=0.270 Sum_probs=33.7
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhc-cCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCR-KRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~-~~~~v~~ 477 (487)
|+=-+.+|.|..=++...|-+- ++++-|++||++ .+|+.|+.+.++ +..+|.+
T Consensus 251 P~gvv~vv~g~~~~~~~~L~~~-~~vd~V~FTGS~-~~G~~v~~~aa~~~l~pv~l 304 (538)
T PLN02466 251 PPGVLNVVSGFGPTAGAALASH-MDVDKLAFTGST-DTGKIVLELAAKSNLKPVTL 304 (538)
T ss_pred CcccEEEEecCchhHHHHHhcC-CCcCEEEEECCH-HHHHHHHHHHHhcCCCcEEE
Confidence 4445778887543333333332 348889999987 578888877664 5567765
No 314
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=21.80 E-value=1.9e+02 Score=31.18 Aligned_cols=50 Identities=32% Similarity=0.308 Sum_probs=27.5
Q ss_pred ceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 426 KVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 426 ~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.+|.|+.-..+-.|-+- ++++-|++||++ ++|+.|+....++..+|.+
T Consensus 176 ~~~~v~g~~~~~~~~l~~~-~~id~v~fTGs~-~~g~~v~~~aa~~~~~~~l 225 (453)
T cd07115 176 VLNVVTGFGEVAGAALVEH-PDVDKITFTGST-AVGRKIMQGAAGNLKRVSL 225 (453)
T ss_pred heEEEecCchhHHHHHhcC-CCCCEEEEECcH-HHHHHHHHHHhhcCCeEEE
Confidence 4566666432222222221 256677777765 5677777665555666654
No 315
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=21.75 E-value=3.6e+02 Score=28.38 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=66.5
Q ss_pred HhhcCCeEEEecc----cccccc-------cccCceeeeecCCC----------CceEEecCCc--------hh-hHHhh
Q 011375 392 ADRLGVKVLSLAA----LNKNES-------LNGGGTLFVDKHPN----------LKVRVVHGNT--------CT-AAVIL 441 (487)
Q Consensus 392 a~~~g~kv~sl~~----ln~~~~-------ln~~g~l~~~~~p~----------l~~rvv~g~~--------l~-~a~v~ 441 (487)
+.+.|.+|+.++. ++|+|+ |.+..-..|-|||+ ..|=|++|.+ |+ ...|.
T Consensus 68 ~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~ 147 (334)
T PRK01713 68 AYDQGAQVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQSIVNELAEYAGVPVFNGLTDEFHPTQMLADVLTMI 147 (334)
T ss_pred HHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEEcCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHH
Confidence 4789999999963 467776 46677788888884 4788999866 11 13454
Q ss_pred hcCCC--ccceEEEeCCc-chHHHHHHHHhhccCcEEEe-chhhhh
Q 011375 442 NELPK--DVKEVFLTGAT-SKLGRAIALYLCRKRVRVLK-DSRKFR 483 (487)
Q Consensus 442 ~~ip~--~~~~v~l~g~~-~k~~~a~a~~lc~~~~~v~~-~~~~~~ 483 (487)
.+... +=..|-+.|.. +.+++..+..+.+-|+.|.. +.+.|+
T Consensus 148 e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~ 193 (334)
T PRK01713 148 ENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALL 193 (334)
T ss_pred HHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhc
Confidence 44432 22468888996 55999999999999999999 666554
No 316
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=21.46 E-value=1.1e+02 Score=31.91 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=47.6
Q ss_pred HHHHHHHHhhcCCeE--EEecccccccccccCc--eeeeecCCCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchH
Q 011375 385 IEDAILRADRLGVKV--LSLAALNKNESLNGGG--TLFVDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKL 460 (487)
Q Consensus 385 ie~ai~~a~~~g~kv--~sl~~ln~~~~ln~~g--~l~~~~~p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~ 460 (487)
+.|++-.|++.|.+| +.+|. +..++|-..| ++|+-.+| ++ .-+.... +.++..-+-+.--+++|.|+| ..
T Consensus 17 ~~Ell~~A~~l~~~v~~vv~g~-~~~~~l~~~Gad~V~~~~~~-~~--~~~~e~~-~~al~~~i~~~~P~~vL~~~T-~~ 90 (312)
T PRK11916 17 YAELFGGAQQWGQQVYAIVQNT-DQAQAVMPYGPKCIYVLEQN-DA--LQRTENY-AESIAALLKDKHPAMLLLAAT-KR 90 (312)
T ss_pred HHHHHHHHHHcCCcEEEEEECh-hHHHHHHhcCCCEEEEeCCc-cc--ccChHHH-HHHHHHHHHhcCCCEEEECCC-cc
Confidence 336666788887554 34452 3456665555 48888888 21 1122222 223333333323477888887 45
Q ss_pred HHHHHHHhhcc-CcEE
Q 011375 461 GRAIALYLCRK-RVRV 475 (487)
Q Consensus 461 ~~a~a~~lc~~-~~~v 475 (487)
||.+|-.|+.| |.-+
T Consensus 91 Grdla~rlAarL~~gl 106 (312)
T PRK11916 91 GKALAARLSVQLNAAL 106 (312)
T ss_pred hHHHHHHHHHHhCCCc
Confidence 78888888744 4433
No 317
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=21.43 E-value=80 Score=30.79 Aligned_cols=35 Identities=31% Similarity=0.309 Sum_probs=26.8
Q ss_pred cceEEEeCCcchHHHHHHHHhhccCcE-EEe-chhhhh
Q 011375 448 VKEVFLTGATSKLGRAIALYLCRKRVR-VLK-DSRKFR 483 (487)
Q Consensus 448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~-v~~-~~~~~~ 483 (487)
.+.|.+.|+. =+|..||.+|.+.|+. +.+ +.|..+
T Consensus 28 ~~~V~ViG~G-glGs~ia~~La~~Gvg~i~lvD~D~ve 64 (212)
T PRK08644 28 KAKVGIAGAG-GLGSNIAVALARSGVGNLKLVDFDVVE 64 (212)
T ss_pred CCCEEEECcC-HHHHHHHHHHHHcCCCeEEEEeCCEec
Confidence 3568899974 5899999999999998 555 555443
No 318
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=21.39 E-value=83 Score=29.21 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCeEEEe
Q 011375 382 NKQIEDAILRADRLGVKVLSL 402 (487)
Q Consensus 382 n~~ie~ai~~a~~~g~kv~sl 402 (487)
|+.+.+|+..|.++|+||+++
T Consensus 114 t~~~i~~~~~ak~~Ga~vI~I 134 (177)
T cd05006 114 SPNVLKALEAAKERGMKTIAL 134 (177)
T ss_pred CHHHHHHHHHHHHCCCEEEEE
No 319
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.27 E-value=49 Score=34.49 Aligned_cols=37 Identities=32% Similarity=0.492 Sum_probs=29.5
Q ss_pred hhcCCCccc--eEEEeCCc-chHHHHHHHHhhccCcEEEe
Q 011375 441 LNELPKDVK--EVFLTGAT-SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 441 ~~~ip~~~~--~v~l~g~~-~k~~~a~a~~lc~~~~~v~~ 477 (487)
..|||.|.+ -|...++. |-=|.++|.+|-+|||.|+.
T Consensus 57 ~eelpd~idiACVvVrsai~Gg~Gs~larall~RGi~Vlq 96 (361)
T COG4693 57 VEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQ 96 (361)
T ss_pred HhhCCCCCCeEEEEEeeeeecCCcHHHHHHHHHcccHHHH
Confidence 367887655 56666666 77799999999999999986
No 320
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=21.23 E-value=1.7e+02 Score=29.03 Aligned_cols=28 Identities=32% Similarity=0.320 Sum_probs=24.0
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+.|++.| +|=+|.+++..+..+|++|..
T Consensus 157 ~~vlV~g-~g~vg~~~~q~a~~~G~~vi~ 184 (319)
T cd08242 157 DKVAVLG-DGKLGLLIAQVLALTGPDVVL 184 (319)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcCCeEEE
Confidence 5678888 578999999999999999877
No 321
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=21.20 E-value=1.8e+02 Score=30.76 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=43.0
Q ss_pred eEEecCCchhhHHhhhcC--CCccceEEEeCCcchHHHHHHHHhhccCcEEEe---chhhh
Q 011375 427 VRVVHGNTCTAAVILNEL--PKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK---DSRKF 482 (487)
Q Consensus 427 ~rvv~g~~l~~a~v~~~i--p~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~---~~~~~ 482 (487)
+-+.-+.+|||-+.+.|| |+.-+.||..||+|=+|.-+-.----.|-+|+= |+|..
T Consensus 131 lg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~EKv 191 (343)
T KOG1196|consen 131 LGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKV 191 (343)
T ss_pred hhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChhhh
Confidence 446678899999999999 887799999999999887655444445667776 66643
No 322
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=21.20 E-value=9.3e+02 Score=24.96 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=26.9
Q ss_pred HHHHHhhcccceeecC------------CCccccccccccccCCchhhhhhhcCCCCCcc
Q 011375 210 FDFLRCLGHCNVEIIP------------HRWFETFPFLRYLLYTPTYHSLHHTEKDSNFC 257 (487)
Q Consensus 210 ~~~~~~~~Hsn~e~~P------------~~~~~~~p~l~~li~tp~~H~lHH~~~~~NYG 257 (487)
....+...|-|..--. .++...-...++++..-.+|+-||.....-|-
T Consensus 219 l~~~nY~EHyGL~r~~~~~gr~e~~~~~hSWNs~~~~~n~l~~nl~rHsdHH~~p~~~y~ 278 (314)
T cd03512 219 LELVNYIEHYGLLRKKLANGRYEPVGPRHSWNSNHIVSNLLLFNLQRHSDHHAHPTRPYQ 278 (314)
T ss_pred HHHHHHHHhcCCccccCCCCccccCCCccCcCcCcHHHHHHHHhcchhhhhccCCCCchh
Confidence 3345777899864311 11111113445555667789999986655544
No 323
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.17 E-value=90 Score=26.80 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=24.5
Q ss_pred hhhhhHHHHHHHHHHHhhcCCeEEEecccc
Q 011375 377 AQTGINKQIEDAILRADRLGVKVLSLAALN 406 (487)
Q Consensus 377 ~~~~in~~ie~ai~~a~~~g~kv~sl~~ln 406 (487)
...|=++.+-+++..|.++|+||+++-.-.
T Consensus 54 S~sG~t~e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 54 SQSGETADTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred eCCcCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 344557889999999999999999987643
No 324
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=21.05 E-value=2.1e+02 Score=30.74 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=34.3
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|.=-+.+|+|+.-..+-.+-+ -++++-|++||++ ++|++|+....+++.++.+
T Consensus 173 P~g~v~~v~~~~~~~~~~l~~-~~~vd~V~ftGs~-~~g~~v~~~aa~~~~~~~l 225 (451)
T cd07103 173 PAGVLNVVTGSPAEIGEALCA-SPRVRKISFTGST-AVGKLLMAQAADTVKRVSL 225 (451)
T ss_pred CcccEEEEecCchhHHHHHhc-CCCCCEEEEECCH-HHHHHHHHHHHhcCCcEEE
Confidence 433467888764332222211 1378889999975 6788888887777777765
No 325
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=20.91 E-value=1.9e+02 Score=31.42 Aligned_cols=52 Identities=27% Similarity=0.376 Sum_probs=29.9
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+=-+.+|.|+.=++..+++ -++++-|++||++ ++|++|+....+++.+|.+
T Consensus 198 P~gvv~~v~g~~~~~~~L~~--~~~v~~V~fTGS~-~~G~~i~~~aa~~~~~~~l 249 (477)
T cd07113 198 PDGVLNVVNGKGAVGAQLIS--HPDVAKVSFTGSV-ATGKKIGRQAASDLTRVTL 249 (477)
T ss_pred CCCcEEEEecCchHHHHHhc--CCCCCEEEEECcH-HHHHHHHHHHHhhcCceEe
Confidence 43346677764423333322 2456778888866 4577777665566666654
No 326
>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]
Probab=20.90 E-value=64 Score=33.91 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=26.3
Q ss_pred eCCcchHHHHHHHHhhccCcEEEe--chhhhh
Q 011375 454 TGATSKLGRAIALYLCRKRVRVLK--DSRKFR 483 (487)
Q Consensus 454 ~g~~~k~~~a~a~~lc~~~~~v~~--~~~~~~ 483 (487)
-||||=|||-++..|.+.|-||++ +-++|+
T Consensus 67 FGAtGFlGryvvnklak~GSQviiPyR~d~~~ 98 (391)
T KOG2865|consen 67 FGATGFLGRYVVNKLAKMGSQVIIPYRGDEYD 98 (391)
T ss_pred ecccccccHHHHHHHhhcCCeEEEeccCCccc
Confidence 399999999999999999999999 555554
No 327
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=20.89 E-value=2.1e+02 Score=30.76 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=29.8
Q ss_pred ceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 426 KVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 426 ~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
-+.+|+|+.=+.+.+.+ ++ ++.|.+||++ .+|+.|+....++..+|.+
T Consensus 159 ~~~~v~g~~~~~~~l~~--~~-v~~V~ftGs~-~~g~~v~~~aa~~~~~~~l 206 (434)
T cd07133 159 EVAVVTGGADVAAAFSS--LP-FDHLLFTGST-AVGRHVMRAAAENLTPVTL 206 (434)
T ss_pred eEEEEeCChHHHHHHHh--CC-CCEEEEeCch-HHHHHHHHHHHhcCceEEE
Confidence 45666665323333343 22 7888899866 5677777766666667766
No 328
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=20.75 E-value=1.8e+02 Score=28.57 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=26.3
Q ss_pred CCccceEEEeCCc--ch--HHHHHHHHhhccCcEEEe
Q 011375 445 PKDVKEVFLTGAT--SK--LGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 445 p~~~~~v~l~g~~--~k--~~~a~a~~lc~~~~~v~~ 477 (487)
++.-.-|-|||=+ || +|.|++..|-++|+++.+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~ 56 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYL 56 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 3444457888866 45 999999999999999988
No 329
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=20.75 E-value=1.8e+02 Score=30.15 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=15.4
Q ss_pred cccccccCCchhhhhhhcCC
Q 011375 233 PFLRYLLYTPTYHSLHHTEK 252 (487)
Q Consensus 233 p~l~~li~tp~~H~lHH~~~ 252 (487)
.+..-+..+-..|+.||+..
T Consensus 227 ww~al~t~GEgwHNnHHafp 246 (289)
T COG1398 227 WWVALVTFGEGWHNNHHAFP 246 (289)
T ss_pred eEEEEeecccccccccccCc
Confidence 45555667889999999964
No 330
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=20.67 E-value=4.5e+02 Score=27.26 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=54.4
Q ss_pred hhcCCeEEEeccccccccccc-Cceeee-ecCCCCceEEecCCchhh-------HHhhhcC-CCccceEEEeCCcchHHH
Q 011375 393 DRLGVKVLSLAALNKNESLNG-GGTLFV-DKHPNLKVRVVHGNTCTA-------AVILNEL-PKDVKEVFLTGATSKLGR 462 (487)
Q Consensus 393 ~~~g~kv~sl~~ln~~~~ln~-~g~l~~-~~~p~l~~rvv~g~~l~~-------a~v~~~i-p~~~~~v~l~g~~~k~~~ 462 (487)
+..|+|+++.--=|..+.|.. .|.+.+ +..-..-+=++||+.||+ |+-.+-+ +++.+.|-+.|+ |..|+
T Consensus 63 ~~~g~K~v~~~p~N~~~glp~~~g~i~L~d~~tG~p~ai~d~~~lT~~RTaA~salaa~~La~~~~~~lgiiG~-G~qA~ 141 (325)
T TIGR02371 63 EMAGVKCVNVHPGNPDRHLPTVMALIILVSPETGFPIALMDGTYITDMRTGAAGGVAAKYLARKDSSVLGIIGA-GRQAW 141 (325)
T ss_pred CeEEEEEEeecCCchhcCCCcceEEEEEeeCCCCCeEEEEeCcchhhHHHHHHHHHHHHHhCCCCCCEEEEECC-CHHHH
Confidence 457999998765555444422 344444 333345667889999985 2333555 788999999986 56888
Q ss_pred HHHHHhh--ccCcEEEe
Q 011375 463 AIALYLC--RKRVRVLK 477 (487)
Q Consensus 463 a~a~~lc--~~~~~v~~ 477 (487)
+-+.+|+ ++.-+|.+
T Consensus 142 ~~l~al~~~~~~~~v~V 158 (325)
T TIGR02371 142 TQLEALSRVFDLEEVSV 158 (325)
T ss_pred HHHHHHHhcCCCCEEEE
Confidence 8666665 45556666
No 331
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=20.63 E-value=88 Score=34.01 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=37.2
Q ss_pred cccccccCceeeeecCCCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 407 KNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 407 ~~~~ln~~g~l~~~~~p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|.|.+|+.|. -|.|. +.+.+....-++.+.+.-...+|--|+|+|.+-.+.|+++.+
T Consensus 99 K~E~~nPtGS--------~K~R~------A~~~a~~a~~~G~~~~vtetgsGN~G~alA~aaa~~Gl~~~V 155 (427)
T PRK12391 99 KYEGVSPTGS--------HKPNT------AVAQAYYNKKEGIKRLTTETGAGQWGSALALACALFGLECTV 155 (427)
T ss_pred EEcCCCCCCC--------hHHHH------HHHHHHHHHHCCCCEEEEccCchHHHHHHHHHHHHcCCcEEE
Confidence 7777777773 14441 334444444567776654222366899999998899998877
No 332
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=20.63 E-value=4.5e+02 Score=30.55 Aligned_cols=87 Identities=24% Similarity=0.277 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHhhcCCeEEEecccccccccccCceeeeecCC--------------CCceEEecCCc-hhhHHhhhcCC
Q 011375 381 INKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHP--------------NLKVRVVHGNT-CTAAVILNELP 445 (487)
Q Consensus 381 in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~l~~~~~p--------------~l~~rvv~g~~-l~~a~v~~~ip 445 (487)
+++.+|+++.+-.+.|-+++.++- | .. -=|-+..+--| +.|++++.|+. .||+.|-+++.
T Consensus 409 ~~~~~~~~~~~~a~~G~~~l~va~-~--~~--~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elG 483 (679)
T PRK01122 409 FPAELDAAVDEVARKGGTPLVVAE-D--NR--VLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAG 483 (679)
T ss_pred ChHHHHHHHHHHHhCCCcEEEEEE-C--Ce--EEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC
Confidence 345677777777888999988873 1 11 11333332222 35889999965 78888988885
Q ss_pred CccceEEEeCCc--chHHHHHHHHhhccCcEEEe
Q 011375 446 KDVKEVFLTGAT--SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 446 ~~~~~v~l~g~~--~k~~~a~a~~lc~~~~~v~~ 477 (487)
= ++ ++...+ .|+ .+...|.++|-.|.|
T Consensus 484 I--d~-v~A~~~PedK~--~iV~~lQ~~G~~VaM 512 (679)
T PRK01122 484 V--DD-FLAEATPEDKL--ALIRQEQAEGRLVAM 512 (679)
T ss_pred C--cE-EEccCCHHHHH--HHHHHHHHcCCeEEE
Confidence 4 34 456666 887 456678888988988
No 333
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=20.54 E-value=1.9e+02 Score=29.87 Aligned_cols=51 Identities=24% Similarity=0.153 Sum_probs=37.8
Q ss_pred eEEecCCchhhHHhhhcCCCc--cceEEEeCCc-chHHHHHHHHhhccCcEEEe
Q 011375 427 VRVVHGNTCTAAVILNELPKD--VKEVFLTGAT-SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 427 ~rvv~g~~l~~a~v~~~ip~~--~~~v~l~g~~-~k~~~a~a~~lc~~~~~v~~ 477 (487)
+=+.||+|=|+-.+|.+.-+. --+|+.+-.- ..-||..|..|++.||.|.+
T Consensus 118 ~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtl 171 (301)
T TIGR00511 118 VVMTHCNSEAALSVIKTAFEQGKDIEVIATETRPRKQGHITAKELRDYGIPVTL 171 (301)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCcchHHHHHHHHHHCCCCEEE
Confidence 446788887776666544322 2367777655 88899999999999999988
No 334
>PRK06815 hypothetical protein; Provisional
Probab=20.53 E-value=2.3e+02 Score=29.13 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=23.5
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
++-+.+..+|--|+|+|.+-.+.|+++.+
T Consensus 68 ~~~vv~aSsGN~g~alA~~a~~~G~~~~i 96 (317)
T PRK06815 68 QQGVITASSGNHGQGVALAAKLAGIPVTV 96 (317)
T ss_pred CceEEEECCChHHHHHHHHHHHhCCCEEE
Confidence 34467777799999999888788998877
No 335
>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.
Probab=20.45 E-value=1.8e+02 Score=31.59 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=34.8
Q ss_pred CCCceEEecCCch-hhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhc--cCcEEEe
Q 011375 423 PNLKVRVVHGNTC-TAAVILNELPKDVKEVFLTGATSKLGRAIALYLCR--KRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l-~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~--~~~~v~~ 477 (487)
|+=-+.+|.|+.- +...+++. ++++-|.+||++ ..|++|+....+ ...+|.+
T Consensus 167 P~gvv~~v~g~~~~~~~~L~~~--~~v~~V~fTGs~-~~G~~i~~~aa~~~~~~p~~l 221 (454)
T cd07129 167 PAGVFSLLQGGGREVGVALVKH--PAIKAVGFTGSR-RGGRALFDAAAARPEPIPFYA 221 (454)
T ss_pred ChhheEEeeCCcHHHHHHHhcC--CCccEEEEeCCh-HHHHHHHHHhhccCccceeEe
Confidence 4445678888542 33333332 578899999966 488889887777 3677766
No 336
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=20.43 E-value=1.4e+02 Score=30.39 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=31.4
Q ss_pred hhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 436 TAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 436 ~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+|+-|+++ .+++.|=+-|.+ |-.--++..||+|||.|+=
T Consensus 121 nAv~vmk~--~g~~~vK~EgGs-~~~~~~~~~l~ergipV~g 159 (306)
T KOG2949|consen 121 NAVRVMKE--GGMDAVKLEGGS-NSRITAAKRLVERGIPVMG 159 (306)
T ss_pred HHHHHHHh--cCCceEEEccCc-HHHHHHHHHHHHcCCceee
Confidence 56778887 788888887765 6667889999999999974
No 337
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=20.36 E-value=1.2e+02 Score=34.51 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=44.8
Q ss_pred ecCCCC-ceEEec---CCchhhHHhhhcCCCcc----------------------ceEEEeCCc--ch--HHHHHHHHhh
Q 011375 420 DKHPNL-KVRVVH---GNTCTAAVILNELPKDV----------------------KEVFLTGAT--SK--LGRAIALYLC 469 (487)
Q Consensus 420 ~~~p~l-~~rvv~---g~~l~~a~v~~~ip~~~----------------------~~v~l~g~~--~k--~~~a~a~~lc 469 (487)
+++|.| |+=++| |+|+++..|++..+..+ +=++++|-. || +|++++..|-
T Consensus 406 ~~~~~lGRfilrdr~~~~Tva~G~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~ 485 (632)
T PRK05506 406 ARNRTTGSFILIDRLTNATVGAGMIDFALRRATNVHWQASDVSREARAARKGQKPATVWFTGLSGSGKSTIANLVERRLH 485 (632)
T ss_pred cccccCceEEEEeccCCceEEEEEECccccccccccccccccCHHHHHHHhCCCcEEEEecCCCCchHHHHHHHHHHHHH
Confidence 345666 555544 88988888888876432 235778855 66 8888888887
Q ss_pred ccCcEEEe-chhhhhh
Q 011375 470 RKRVRVLK-DSRKFRK 484 (487)
Q Consensus 470 ~~~~~v~~-~~~~~~~ 484 (487)
.+|..+.. +.|.+.+
T Consensus 486 ~~~~~~~~l~~D~~r~ 501 (632)
T PRK05506 486 ALGRHTYLLDGDNVRH 501 (632)
T ss_pred HcCCCEEEEcChhhhh
Confidence 77877665 7776654
No 338
>PRK08328 hypothetical protein; Provisional
Probab=20.33 E-value=88 Score=30.83 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=26.0
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEEe--chhhhh
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVLK--DSRKFR 483 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~~--~~~~~~ 483 (487)
+.|++.|+.| +|.++|.+|++-|+.=+. +.|..+
T Consensus 28 ~~VlIiG~GG-lGs~ia~~La~~Gvg~i~lvD~D~ve 63 (231)
T PRK08328 28 AKVAVVGVGG-LGSPVAYYLAAAGVGRILLIDEQTPE 63 (231)
T ss_pred CcEEEECCCH-HHHHHHHHHHHcCCCEEEEEcCCccC
Confidence 4688988864 899999999999997444 544443
No 339
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=20.33 E-value=2.3e+02 Score=30.82 Aligned_cols=50 Identities=28% Similarity=0.338 Sum_probs=26.8
Q ss_pred ceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhc-cCcEEEe
Q 011375 426 KVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCR-KRVRVLK 477 (487)
Q Consensus 426 ~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~-~~~~v~~ 477 (487)
-+.+|+|+.-.++-.|-+- ++++-|.+||++ ++|+.|+....+ +..+|.+
T Consensus 200 ~~~~v~g~~~~~~~~L~~~-~~vd~V~fTGs~-~~g~~v~~~aa~~~~~~~~l 250 (476)
T cd07091 200 VVNIVPGFGPTAGAAISSH-MDVDKIAFTGST-AVGRTIMEAAAKSNLKKVTL 250 (476)
T ss_pred cEEEEeCCChhHHHHHhcC-CCcCEEEEECcH-HHHHHHHHHHHhcCCceEEE
Confidence 3566666433222222222 266777777764 567777766555 4455555
No 340
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=20.31 E-value=2.1e+02 Score=30.84 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=16.3
Q ss_pred ccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 447 DVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 447 ~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
+++-|.+||++ +.|+.|+....++..+|.+
T Consensus 212 ~v~~V~ftGs~-~~g~~i~~~aa~~~~~~~l 241 (468)
T cd07088 212 KVGMISLTGST-EAGQKIMEAAAENITKVSL 241 (468)
T ss_pred CCCEEEEECcH-HHHHHHHHHHHhcCCcEEE
Confidence 45566666644 4555555554455545444
No 341
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=20.25 E-value=1.3e+02 Score=31.38 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=38.3
Q ss_pred chhhHHhhh-----cCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 434 TCTAAVILN-----ELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 434 ~l~~a~v~~-----~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
..|+++|+. .|+-.-|+|...|.+.=||+-+|..|-++|..|.+
T Consensus 148 PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtv 196 (299)
T PLN02516 148 PCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTV 196 (299)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEE
Confidence 567777765 35667799999999999999999999999999999
No 342
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=20.23 E-value=2.3e+02 Score=30.88 Aligned_cols=53 Identities=26% Similarity=0.308 Sum_probs=28.5
Q ss_pred CCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 423 p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
|+=-+.+|+|+.-.+.-.|-+- ++++-|.+||++ .+|++|+.+..++..+|.+
T Consensus 200 P~gv~~~v~g~~~~~~~~L~~~-~~vd~V~fTGS~-~~g~~i~~~a~~~~~~~~l 252 (484)
T cd07144 200 PPGVVNIIPGYGAVAGSALAEH-PDVDKIAFTGST-ATGRLVMKAAAQNLKAVTL 252 (484)
T ss_pred CCCcEEEEecCCchHHHHHhcC-CCcCEEEEECcH-HHHHHHHHHHHhcCCeEEE
Confidence 3334566766432222222222 367777888866 4667777665555555544
No 343
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.22 E-value=1.3e+02 Score=26.40 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=22.7
Q ss_pred ceEEEeCCc---chHHHHHHHHhhccCcEEEe
Q 011375 449 KEVFLTGAT---SKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 449 ~~v~l~g~~---~k~~~a~a~~lc~~~~~v~~ 477 (487)
|.|-+.|++ +|.|+-|...|-++|.+|.-
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~ 32 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYP 32 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEE
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEE
Confidence 467888988 89999999999999999877
No 344
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=20.21 E-value=1.7e+02 Score=31.02 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=19.3
Q ss_pred hhhhHHHHHHHHHHHhhcCCeEE
Q 011375 378 QTGINKQIEDAILRADRLGVKVL 400 (487)
Q Consensus 378 ~~~in~~ie~ai~~a~~~g~kv~ 400 (487)
.+.+-+.|-+|+.+|-+.||||=
T Consensus 58 ~d~~g~~i~~aL~~aa~rGV~Vr 80 (369)
T PHA03003 58 STPEGRLILDKLKEAAESGVKVT 80 (369)
T ss_pred CCchHHHHHHHHHHhccCCCeEE
Confidence 47778888889998889999983
No 345
>PLN02477 glutamate dehydrogenase
Probab=20.12 E-value=1.1e+02 Score=33.23 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=24.7
Q ss_pred ceEEEeCCcchHHHHHHHHhhccCcEEE
Q 011375 449 KEVFLTGATSKLGRAIALYLCRKRVRVL 476 (487)
Q Consensus 449 ~~v~l~g~~~k~~~a~a~~lc~~~~~v~ 476 (487)
+.|.+.| .|+||+.+|..|+++|.||+
T Consensus 207 ~~VaIqG-fGnVG~~~A~~L~e~GakVV 233 (410)
T PLN02477 207 QTFVIQG-FGNVGSWAAQLIHEKGGKIV 233 (410)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence 4688888 69999999999999999999
No 346
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.10 E-value=1.3e+02 Score=31.10 Aligned_cols=44 Identities=25% Similarity=0.303 Sum_probs=37.5
Q ss_pred chhhHHhhhcC-----CCccceEEEeCCcchHHHHHHHHhhccCcEEEe
Q 011375 434 TCTAAVILNEL-----PKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK 477 (487)
Q Consensus 434 ~l~~a~v~~~i-----p~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~ 477 (487)
..|+++|+.-+ +-.=|+|...|.+.=||+.+|..|-++|..|.+
T Consensus 140 PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv 188 (285)
T PRK10792 140 PCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTV 188 (285)
T ss_pred CCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEE
Confidence 46777776544 556789999999999999999999999999999
Done!