BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011376
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 104/193 (53%), Gaps = 12/193 (6%)
Query: 31 TALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLD-PLHIAASQGYQDIVQVLLDHYPE 89
T L +A+ GHL +VK LLQ VS N ++ PLH+AA G+ ++ + LL + +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNKAK 72
Query: 90 LTKTLGQSNATPLITAATKGHVDVLHVLL--SKDPHLLKIPRSNGKNALHLAARQGHVDV 147
+ + + TPL AA GH +++ +LL + +P+L + G LH+AAR+GHV+
Sbjct: 73 VNAK-AKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT---TAGHTPLHIAAREGHVET 128
Query: 148 VKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVA 207
V +L+K+ A T KKG T LH+A K V LLL D A K G T LHVA
Sbjct: 129 VLALLEKEASQACMT-KKGFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGLTPLHVA 186
Query: 208 TRKKRIEIVNELL 220
++IV LL
Sbjct: 187 VHHNNLDIVKLLL 199
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 110/217 (50%), Gaps = 15/217 (6%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLL--DH 86
G T L IAA+ GH++ V LL+ + K G PLH+AA G + ++LL D
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKK--GFTPLHVAAKYGKVRVAELLLERDA 170
Query: 87 YPELTKTLGQSNATPLITAATKGHVDVLHVLLSK--DPHLLKIPRSNGKNALHLAARQGH 144
+P G++ TPL A ++D++ +LL + PH P NG LH+AA+Q
Sbjct: 171 HP---NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH---SPAWNGYTPLHIAAKQNQ 224
Query: 145 VDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTAL 204
V+V + +L+ A +G T LH+A + +E+V LLL + A L +K G T L
Sbjct: 225 VEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLL-SKQANGNLGNKSGLTPL 282
Query: 205 HVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIA 241
H+ ++ + + + L+ + V+ T+ T L +A
Sbjct: 283 HLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVA 318
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 8/144 (5%)
Query: 100 TPLITAATKGHVDVLHVLLSK--DPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQ 157
TPL A+ GH+ ++ LL + P++ + + LH+AAR GH +V K++L+ +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNV---KVETPLHMAARAGHTEVAKYLLQNKAK 72
Query: 158 LARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVN 217
+ K QT LH A + + +V+LLL ++A L G+T LH+A R+ +E V
Sbjct: 73 VNAKA-KDDQTPLHCAARIGHTNMVKLLL-ENNANPNLATTAGHTPLHIAAREGHVETVL 130
Query: 218 ELLALSDIDVNILTKDRKTALDIA 241
LL + +TK T L +A
Sbjct: 131 ALLE-KEASQACMTKKGFTPLHVA 153
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 8/127 (6%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDH-- 86
G T L +AA+ GH ++V LL +L + SGL PLH+ A +G+ + VL+ H
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANG--NLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 302
Query: 87 YPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVD 146
+ T +G TPL A+ G++ ++ LL + G + LH AA+QGH D
Sbjct: 303 MVDATTRMGY---TPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTD 358
Query: 147 VVKHILK 153
+V +LK
Sbjct: 359 IVTLLLK 365
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHY 87
+G T L +A+ G++ +VK LLQ+ V+ K+ G PLH AA QG+ DIV +LL +
Sbjct: 310 MGYTPLHVASHYGNIKLVKFLLQHQAD--VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Query: 88 PELTKTLGQSNATPLITAATKGHVDVLHVL----------LSKDPHLLKIPRS 130
+ + TPL A G++ V VL L D H + P +
Sbjct: 368 ASPNE-VSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPET 419
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 90/157 (57%), Gaps = 13/157 (8%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHY--PEL 90
L AA+NG+ D VK+LL+ V+ + G PLH+AA G++++V++LL P
Sbjct: 8 LIEAAENGNKDRVKDLLENGAD--VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA 65
Query: 91 TKTLGQSNATPLITAATKGHVDVLHVLLSK--DPHLLKIPRSNGKNALHLAARQGHVDVV 148
+ G+ TPL AA GH +V+ +LLS+ DP+ S+GK LHLAA GH +VV
Sbjct: 66 KDSDGK---TPLHLAAENGHKEVVKLLLSQGADPN---AKDSDGKTPLHLAAENGHKEVV 119
Query: 149 KHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
K +L + +D G+T L +A + + EVV+LL
Sbjct: 120 KLLLSQGAD-PNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 75/130 (57%), Gaps = 12/130 (9%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHY- 87
G+T L +AA+NGH +VVK LL + K + G PLH+AA G++++V++LL
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGAD--PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 94
Query: 88 -PELTKTLGQSNATPLITAATKGHVDVLHVLLSK--DPHLLKIPRSNGKNALHLAARQGH 144
P + G+ TPL AA GH +V+ +LLS+ DP+ S+G+ L LA G+
Sbjct: 95 DPNAKDSDGK---TPLHLAAENGHKEVVKLLLSQGADPN---TSDSDGRTPLDLAREHGN 148
Query: 145 VDVVKHILKK 154
+VVK + K+
Sbjct: 149 EEVVKLLEKQ 158
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 70/142 (49%), Gaps = 8/142 (5%)
Query: 102 LITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARH 161
LI AA G+ D + LL + S+GK LHLAA GH +VVK +L +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNA 65
Query: 162 TDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLPDKFGNTALHVATRKKRIEIVNEL 219
D G+T LH+A + EVV+LLL GAD D G T LH+A E+V L
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK---DSDGKTPLHLAAENGHKEVVKLL 122
Query: 220 LALSDIDVNILTKDRKTALDIA 241
L+ D N D +T LD+A
Sbjct: 123 LSQG-ADPNTSDSDGRTPLDLA 143
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 77/125 (61%), Gaps = 4/125 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L +AA+NGHL+VVK LL+ V+ K +G PLH+AA G+ ++V++LL+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVV 148
++ ++ TPL AA GH++V+ +LL + NG+ LHLAAR GH++VV
Sbjct: 60 DVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVV 117
Query: 149 KHILK 153
K +L+
Sbjct: 118 KLLLE 122
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 76/128 (59%), Gaps = 3/128 (2%)
Query: 63 SGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDP 122
+G PLH+AA G+ ++V++LL+ ++ ++ TPL AA GH++V+ +LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 123 HLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVV 182
+ NG+ LHLAAR GH++VVK +L+ + DK G+T LH+A + EVV
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVV 117
Query: 183 RLLLGADS 190
+LLL A +
Sbjct: 118 KLLLEAGA 125
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 100 TPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLA 159
TPL AA GH++V+ +LL + NG+ LHLAAR GH++VVK +L+ +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV- 61
Query: 160 RHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNEL 219
DK G+T LH+A + EVV+LLL A + + DK G T LH+A R +E+V L
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLL 120
Query: 220 L 220
L
Sbjct: 121 L 121
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Query: 131 NGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADS 190
NG+ LHLAAR GH++VVK +L+ + DK G+T LH+A + EVV+LLL A +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 191 AIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIA 241
+ DK G T LH+A R +E+V +LL + DVN K+ +T L +A
Sbjct: 60 DVNA-KDKNGRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLA 108
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 87/157 (55%), Gaps = 13/157 (8%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHY--PEL 90
L AA+NG+ D VK+LL+ S + G PLH AA G+++IV++LL P
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNAS--DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA 65
Query: 91 TKTLGQSNATPLITAATKGHVDVLHVLLSK--DPHLLKIPRSNGKNALHLAARQGHVDVV 148
+ G+ TPL AA GH +++ +LLSK DP+ S+G+ LH AA GH ++V
Sbjct: 66 KDSDGR---TPLHYAAENGHKEIVKLLLSKGADPN---AKDSDGRTPLHYAAENGHKEIV 119
Query: 149 KHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
K +L K +D G+T L +A + + E+V+LL
Sbjct: 120 KLLLSKGAD-PNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 72/130 (55%), Gaps = 12/130 (9%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHY- 87
G T L AA+NGH ++VK LL + K + G PLH AA G+++IV++LL
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLSKGAD--PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 94
Query: 88 -PELTKTLGQSNATPLITAATKGHVDVLHVLLSK--DPHLLKIPRSNGKNALHLAARQGH 144
P + G+ TPL AA GH +++ +LLSK DP+ S+G+ L LA G+
Sbjct: 95 DPNAKDSDGR---TPLHYAAENGHKEIVKLLLSKGADPN---TSDSDGRTPLDLAREHGN 148
Query: 145 VDVVKHILKK 154
++VK + K+
Sbjct: 149 EEIVKLLEKQ 158
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 69/144 (47%), Gaps = 12/144 (8%)
Query: 102 LITAATKGHVDVLHVLLSK--DPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLA 159
LI AA G+ D + LL DP+ S+G+ LH AA GH ++VK +L K
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPN---ASDSDGRTPLHYAAENGHKEIVKLLLSKGAD-P 63
Query: 160 RHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLPDKFGNTALHVATRKKRIEIVN 217
D G+T LH A + E+V+LLL GAD D G T LH A EIV
Sbjct: 64 NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK---DSDGRTPLHYAAENGHKEIVK 120
Query: 218 ELLALSDIDVNILTKDRKTALDIA 241
LL+ D N D +T LD+A
Sbjct: 121 LLLSKG-ADPNTSDSDGRTPLDLA 143
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 89/153 (58%), Gaps = 5/153 (3%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L AA+NG+ D VK+L++ V+ + G PLH AA +G+++IV++L+ ++
Sbjct: 8 LIEAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN- 64
Query: 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHIL 152
TPL AA +GH +++ +L+SK + S+G+ LH AA++GH ++VK ++
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLI 123
Query: 153 KKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
K + +D G+T L +A + + E+V+LL
Sbjct: 124 SKGADV-NTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 102 LITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARH 161
LI AA G+ D + L+ + S+G+ LH AA++GH ++VK ++ K +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NA 65
Query: 162 TDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLA 221
D G+T LH A K E+V+LL+ + A D G T LH A ++ EIV +LL
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAAKEGHKEIV-KLLI 123
Query: 222 LSDIDVNILTKDRKTALDIA 241
DVN D +T LD+A
Sbjct: 124 SKGADVNTSDSDGRTPLDLA 143
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L AAK GH ++VK L+ V+ K + G PLH AA +G+++IV++L+
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLISKGAD--VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 94
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVV 148
++ TPL AA +GH +++ +L+SK + S+G+ L LA G+ ++V
Sbjct: 95 DVN-AKDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEIV 152
Query: 149 KHILKK 154
K + K+
Sbjct: 153 KLLEKQ 158
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 90/186 (48%), Gaps = 11/186 (5%)
Query: 31 TALFIAAKNGHLDVVKELLQYMTKEG--VSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
T L AA+N HL+ VK Y+ K G V K G LH+AA +G+ ++VQ LL +
Sbjct: 46 TPLMEAAENNHLEAVK----YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKN-ALHLAARQGHVDV 147
TP+I A HVD++ +LLSK + R N +N LH AA G VD+
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI--NIRDNEENICLHWAAFSGCVDI 159
Query: 148 VKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVA 207
+ +L L + G + LH+A + + V L L DS + L +K G T L A
Sbjct: 160 AEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT-LKNKEGETPLQCA 217
Query: 208 TRKKRI 213
+ ++
Sbjct: 218 SLNSQV 223
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 3/155 (1%)
Query: 67 PLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLK 126
PLH AA G+ DI +L+ + T + TPL+ AA H++ + L+ K L+
Sbjct: 14 PLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLI-KAGALVD 71
Query: 127 IPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL 186
+ G LHLAA++GH +VV+++L D G T + A + ++V+LLL
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131
Query: 187 GADSAIAMLPDKFGNTALHVATRKKRIEIVNELLA 221
S I + D N LH A ++I LLA
Sbjct: 132 SKGSDIN-IRDNEENICLHWAAFSGCVDIAEILLA 165
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 3/146 (2%)
Query: 96 QSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKD 155
Q+ +PL AA GHVD+ H+L+ + + + + L AA H++ VK+++K
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 156 TQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEI 215
L D +G T LH+A K EVV+ LL D G T + AT K +++
Sbjct: 68 A-LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDL 126
Query: 216 VNELLALSDIDVNILTKDRKTALDIA 241
V LL+ D+NI + L A
Sbjct: 127 VKLLLSKGS-DINIRDNEENICLHWA 151
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEG---VSLKSNSGLDPLHIAASQGYQDIVQVLLD 85
G T L +AAK GH +VV QY+ G V+ + + G P+ A + D+V++LL
Sbjct: 77 GSTCLHLAAKKGHYEVV----QYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 86 HYPELTKTLGQSNATPLITAATKGHVDVLHVLLSK--DPHLLKIPRSNGKNALHLAARQG 143
++ + N L AA G VD+ +LL+ D H + I +G + LH+AAR+
Sbjct: 133 KGSDINIRDNEENIC-LHWAAFSGCVDIAEILLAAKCDLHAVNI---HGDSPLHIAAREN 188
Query: 144 HVDVVKHILKKDTQLARHTDKKGQTALHMA 173
D V L +D+ + +K+G+T L A
Sbjct: 189 RYDCVVLFLSRDSDVTL-KNKEGETPLQCA 217
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 125 LKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRL 184
K+ N ++ LH AA GHVD+ +++ + ++ + +T L A + E V+
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKY 62
Query: 185 LLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNI 229
L+ A A+ D G+T LH+A +K E+V LL+ +DVN
Sbjct: 63 LIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC 106
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L AA+NG+ D VK+L++ V+ + G PLH AA G++++V++L+ ++
Sbjct: 8 LIEAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN- 64
Query: 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHIL 152
TPL AA GH +V+ +L+SK + S+G+ LH AA GH +VVK ++
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLI 123
Query: 153 KKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
K + +D G+T L +A + + EVV+LL
Sbjct: 124 SKGADVNT-SDSDGRTPLDLAREHGNEEVVKLL 155
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L AA+NGH +VVK L+ V+ K + G PLH AA G++++V++L+
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISKGAD--VNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 94
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVV 148
++ TPL AA GH +V+ +L+SK + S+G+ L LA G+ +VV
Sbjct: 95 DVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVV 152
Query: 149 K 149
K
Sbjct: 153 K 153
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 102 LITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARH 161
LI AA G+ D + L+ + S+G+ LH AA GH +VVK ++ K +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NA 65
Query: 162 TDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLA 221
D G+T LH A + EVV+LL+ + A D G T LH A E+V +LL
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVV-KLLI 123
Query: 222 LSDIDVNILTKDRKTALDIA 241
DVN D +T LD+A
Sbjct: 124 SKGADVNTSDSDGRTPLDLA 143
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 95 GQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKK 154
G L+ AA G D + +L++ + +G LHLAAR+GH+++V+ +LK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 155 DTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIE 214
+ DK G T LH+A + E+V +LL A + + DK G T LH+A R+ +E
Sbjct: 70 GADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-KDKDGYTPLHLAAREGHLE 127
Query: 215 IVNELLALSDIDVNILTKDRKTALDIA 241
IV E+L + DVN K KTA DI+
Sbjct: 128 IV-EVLLKAGADVNAQDKFGKTAFDIS 153
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L AA+ G D V+ L+ V+ K G PLH+AA +G+ +IV+VLL ++
Sbjct: 18 LLEAARAGQDDEVRILMANGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 75
Query: 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHIL 152
+ TPL AA +GH++++ VLL + +G LHLAAR+GH+++V+ +L
Sbjct: 76 K-DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Query: 153 KKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
K + DK G+TA +++ + ++ +L
Sbjct: 134 KAGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 105/221 (47%), Gaps = 20/221 (9%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSN--SGLDP--LHIAASQGYQDIVQVLLDHYP 88
L A +G L++V+ LL++ T+E + + S DP H Q L P
Sbjct: 15 LLRAVADGDLEMVRYLLEW-TEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVP 73
Query: 89 ELTKTLG-----QSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNA--LHLAAR 141
LG Q ++PL AA G D++ +LL H N A LHLA +
Sbjct: 74 --ASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLK---HGANAGARNADQAVPLHLACQ 128
Query: 142 QGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGN 201
QGH VVK +L + + + D G T L A G E+V LLL ++I +K GN
Sbjct: 129 QGHFQVVKCLLDSNAKPNK-KDLSGNTPLIYACSGGHHELVALLLQHGASINASNNK-GN 186
Query: 202 TALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAE 242
TALH A +K + +V ELL L V +L K ++TA+D AE
Sbjct: 187 TALHEAVIEKHVFVV-ELLLLHGASVQVLNKRQRTAVDCAE 226
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L AA+ G D V+ L+ V+ K G PLH+AA +G+ +IV+VLL ++
Sbjct: 6 LLEAARAGQDDEVRILMANGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 63
Query: 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHIL 152
+ TPL AA +GH++++ VLL + +G LHLAAR+GH+++V+ +L
Sbjct: 64 K-DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 153 KKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
K + DK G+T +A+ + ++ +L
Sbjct: 122 KAGADV-NAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 102 LITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARH 161
L+ AA G D + +L++ + +G LHLAAR+GH+++V+ +LK +
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NA 63
Query: 162 TDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLA 221
DK G T LH+A + E+V +LL A + + DK G T LH+A R+ +EIV E+L
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-KDKDGYTPLHLAAREGHLEIV-EVLL 121
Query: 222 LSDIDVNILTKDRKTALDIA 241
+ DVN K KT D+A
Sbjct: 122 KAGADVNAQDKFGKTPFDLA 141
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 166 GQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDI 225
G+ L A G EV R+L+ A+ A DK G T LH+A R+ +EIV E+L +
Sbjct: 3 GKKLLEAARAGQDDEV-RILM-ANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGA 59
Query: 226 DVNILTKDRKTALDIA 241
DVN KD T L +A
Sbjct: 60 DVNAKDKDGYTPLHLA 75
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L AA+ G D V+ L+ V+ K G PLH+AA +G+ +IV+VLL ++
Sbjct: 6 LLEAARAGQDDEVRILMANGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 63
Query: 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHIL 152
+ TPL AA +GH++++ VLL + +G LHLAAR+GH+++V+ +L
Sbjct: 64 K-DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 153 KKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
K + DK G+T +A++ ++ +L
Sbjct: 122 KAGADV-NAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 102 LITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARH 161
L+ AA G D + +L++ + +G LHLAAR+GH+++V+ +LK +
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NA 63
Query: 162 TDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLA 221
DK G T LH+A + E+V +LL A + + DK G T LH+A R+ +EIV E+L
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-KDKDGYTPLHLAAREGHLEIV-EVLL 121
Query: 222 LSDIDVNILTKDRKTALDIA 241
+ DVN K KT D+A
Sbjct: 122 KAGADVNAQDKFGKTPFDLA 141
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L +AA+ GHL++V+ LL+ V+ K G PLH+AA +G+ +IV+VLL
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVV 148
++ + TPL AA +GH++++ VLL + GK LA R+GH D+
Sbjct: 93 DVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPFDLAIREGHEDIA 150
Query: 149 KHILKK 154
+ +L+K
Sbjct: 151 E-VLQK 155
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 166 GQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDI 225
G+ L A G EV R+L+ A+ A DK G T LH+A R+ +EIV E+L +
Sbjct: 3 GKKLLEAARAGQDDEV-RILM-ANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGA 59
Query: 226 DVNILTKDRKTALDIA 241
DVN KD T L +A
Sbjct: 60 DVNAKDKDGYTPLHLA 75
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 9/155 (5%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPEL-- 90
L AA+ G D V+ L+ V+ N+G PLH+AA G+ +IV+VLL H ++
Sbjct: 18 LLEAARAGQDDEVRILMA--NGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDA 75
Query: 91 TKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKH 150
+ G TPL AA GH++++ VLL K+ + S+G LHLAA+ G++++V+
Sbjct: 76 SDVFGY---TPLHLAAYWGHLEIVEVLL-KNGADVNAMDSDGMTPLHLAAKWGYLEIVEV 131
Query: 151 ILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
+LK + DK G+TA +++ + ++ +L
Sbjct: 132 LLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 12/141 (8%)
Query: 71 AASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRS 130
AA G D V++L+ + ++ + TPL AA GH++++ VLL H + S
Sbjct: 21 AARAGQDDEVRILMANGADVNAA-DNTGTTPLHLAAYSGHLEIVEVLLK---HGADVDAS 76
Query: 131 N--GKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL-- 186
+ G LHLAA GH+++V+ +LK + D G T LH+A K E+V +LL
Sbjct: 77 DVFGYTPLHLAAYWGHLEIVEVLLKNGADV-NAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
Query: 187 GADSAIAMLPDKFGNTALHVA 207
GAD DKFG TA ++
Sbjct: 136 GAD---VNAQDKFGKTAFDIS 153
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 12/160 (7%)
Query: 102 LITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARH 161
L+ AA G D + +L++ + + G LHLAA GH+++V+ +LK +
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDA- 75
Query: 162 TDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLPDKFGNTALHVATRKKRIEIVNEL 219
+D G T LH+A E+V +LL GAD AM D G T LH+A + +EIV E+
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLKNGAD-VNAM--DSDGMTPLHLAAKWGYLEIV-EV 131
Query: 220 LALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLER 259
L DVN K KTA DI+ +L E L++
Sbjct: 132 LLKHGADVNAQDKFGKTAFDIS----IDNGNEDLAEILQK 167
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDH 86
G T L +AA GHL++V+ LL+ V+ + G+ PLH+AA GY +IV+VLL H
Sbjct: 79 FGYTPLHLAAYWGHLEIVEVLLK--NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 139 AARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLP 196
AAR G D V+ IL + D G T LH+A E+V +LL GAD +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS--- 76
Query: 197 DKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKEC 256
D FG T LH+A +EIV E+L + DVN + D T L +A + E+ E
Sbjct: 77 DVFGYTPLHLAAYWGHLEIV-EVLLKNGADVNAMDSDGMTPLHLAAKWGY----LEIVEV 131
Query: 257 LERNGA 262
L ++GA
Sbjct: 132 LLKHGA 137
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L AA+ G D V+ L+ V+ N G PLH+AAS G+ +IV+VLL + ++
Sbjct: 18 LLEAARAGQDDEVRILMANGAD--VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA 75
Query: 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHIL 152
+ + TPL AA GH++++ VLL K + ++G LHLAA+ GH+++V+ +L
Sbjct: 76 S-DLTGITPLHLAAATGHLEIVEVLL-KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Query: 153 KKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
K + DK G+TA +++ + ++ +L
Sbjct: 134 KHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 7/92 (7%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSN--SGLDPLHIAASQGYQDIVQVLLDH 86
G T L +AA NGHL++V+ LL K G + ++ +G+ PLH+AA+ G+ +IV+VLL H
Sbjct: 47 GYTPLHLAASNGHLEIVEVLL----KNGADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 87 YPELTKTLGQSNATPLITAATKGHVDVLHVLL 118
++ TPL AA GH++++ VLL
Sbjct: 103 GADVN-AYDNDGHTPLHLAAKYGHLEIVEVLL 133
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 8/142 (5%)
Query: 102 LITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARH 161
L+ AA G D + +L++ + ++G LHLAA GH+++V+ +LK +
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLLKNGADV-NA 75
Query: 162 TDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLPDKFGNTALHVATRKKRIEIVNEL 219
+D G T LH+A E+V +LL GAD D G+T LH+A + +EIV E+
Sbjct: 76 SDLTGITPLHLAAATGHLEIVEVLLKHGAD---VNAYDNDGHTPLHLAAKYGHLEIV-EV 131
Query: 220 LALSDIDVNILTKDRKTALDIA 241
L DVN K KTA DI+
Sbjct: 132 LLKHGADVNAQDKFGKTAFDIS 153
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVL 83
G T L +AAK GHL++V+ LL++ V+ + G I+ G +D+ ++L
Sbjct: 113 GHTPLHLAAKYGHLEIVEVLLKHGAD--VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 89/155 (57%), Gaps = 9/155 (5%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELT- 91
L AA+ G D V+ L+ V+ + +G PLH+AA G+ +IV+VLL + ++
Sbjct: 18 LLEAARAGQDDEVRILMANGAD--VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA 75
Query: 92 -KTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKH 150
+LG TPL AA +GH++++ VLL K+ + S+G LHLAA++GH+++V+
Sbjct: 76 KDSLG---VTPLHLAARRGHLEIVEVLL-KNGADVNASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 151 ILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
+LK + DK G+TA +++ + ++ +L
Sbjct: 132 LLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L +AA GHL++V+ LL+ V+ K + G+ PLH+AA +G+ +IV+VLL +
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGAD--VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGA 104
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVV 148
++ + TPL AA +GH++++ VLL K+ + GK A ++ G+ D+
Sbjct: 105 DVNAS-DSHGFTPLHLAAKRGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 149 KHILKK 154
+ IL+K
Sbjct: 163 E-ILQK 167
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 12/167 (7%)
Query: 95 GQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKK 154
G L+ AA G D + +L++ + G LHLAA GH+++V+ +LK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHFGHLEIVEVLLKN 69
Query: 155 DTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLPDKFGNTALHVATRKKR 212
+ D G T LH+A + E+V +LL GAD + D G T LH+A ++
Sbjct: 70 GADV-NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNAS---DSHGFTPLHLAAKRGH 125
Query: 213 IEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLER 259
+EIV E+L + DVN K KTA DI+ +L E L++
Sbjct: 126 LEIV-EVLLKNGADVNAQDKFGKTAFDIS----IDNGNEDLAEILQK 167
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 139 AARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDK 198
AAR G D V+ IL + D G T LH+A E+V +LL + A D
Sbjct: 21 AARAGQDDEVR-ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLL-KNGADVNAKDS 78
Query: 199 FGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLE 258
G T LH+A R+ +EIV E+L + DVN T L +A E+ E L
Sbjct: 79 LGVTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAA----KRGHLEIVEVLL 133
Query: 259 RNGA 262
+NGA
Sbjct: 134 KNGA 137
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHY 87
LG T L +AAK GHL++V+ LL+Y V+ N G PLH+AA G+ +IV+VLL H
Sbjct: 46 LGHTPLHLAAKTGHLEIVEVLLKYGAD--VNAWDNYGATPLHLAADNGHLEIVEVLLKHG 103
Query: 88 PELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDV 147
++ TPL AA GH++++ VLL + GK A ++ G+ D+
Sbjct: 104 ADVNAK-DYEGFTPLHLAAYDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISIDNGNEDL 161
Query: 148 VKHILKK 154
+ IL+K
Sbjct: 162 AE-ILQK 167
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 12/141 (8%)
Query: 71 AASQGYQDIVQVLLDHYPELTKT--LGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIP 128
AA G D V++L+ + ++ T LG TPL AA GH++++ VLL +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGH---TPLHLAAKTGHLEIVEVLLKYGADV-NAW 76
Query: 129 RSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL-- 186
+ G LHLAA GH+++V+ +LK + D +G T LH+A E+V +LL
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADV-NAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 187 GADSAIAMLPDKFGNTALHVA 207
GAD DKFG TA ++
Sbjct: 136 GAD---VNAQDKFGKTAFDIS 153
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 76/167 (45%), Gaps = 12/167 (7%)
Query: 95 GQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKK 154
G L+ AA G D + +L++ + G LHLAA+ GH+++V+ +LK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NATDWLGHTPLHLAAKTGHLEIVEVLLKY 69
Query: 155 DTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLPDKFGNTALHVATRKKR 212
+ D G T LH+A E+V +LL GAD D G T LH+A
Sbjct: 70 GADV-NAWDNYGATPLHLAADNGHLEIVEVLLKHGAD---VNAKDYEGFTPLHLAAYDGH 125
Query: 213 IEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLER 259
+EIV LL DVN K KTA DI+ +L E L++
Sbjct: 126 LEIVEVLLKYG-ADVNAQDKFGKTAFDIS----IDNGNEDLAEILQK 167
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 5/151 (3%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L AA+ G D V+ L+ V+ N+GL PLH+AA G+ +IV+VLL H ++
Sbjct: 18 LLEAARAGQDDEVRILIA--NGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDA 75
Query: 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHIL 152
TPL AA GH++++ VLL + + G LHLAA +GH+++V+ +L
Sbjct: 76 A-DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMT-GSTPLHLAADEGHLEIVEVLL 133
Query: 153 KKDTQLARHTDKKGQTALHMAVKGISSEVVR 183
K + DK G+TA +++ + ++ +
Sbjct: 134 KYGADV-NAQDKFGKTAFDISIDNGNEDLAK 163
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 95 GQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKK 154
G L+ AA G D + +L++ + + + G LHLAA GH+++V+ +LK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILIANGADVNAVDNT-GLTPLHLAAVSGHLEIVEVLLKH 69
Query: 155 DTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLPDKFGNTALHVATRKKR 212
+ D G T LH+A E+V +LL GAD D G+T LH+A +
Sbjct: 70 GADVDA-ADVYGFTPLHLAAMTGHLEIVEVLLKYGAD---VNAFDMTGSTPLHLAADEGH 125
Query: 213 IEIVNELLALSDIDVNILTKDRKTALDIA 241
+EIV LL DVN K KTA DI+
Sbjct: 126 LEIVEVLLKYG-ADVNAQDKFGKTAFDIS 153
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLL 84
G T L +AA GHL++V+ LL+Y V+ +G PLH+AA +G+ +IV+VLL
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGAD--VNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQ 81
G T L +AA GHL++V+ LL+Y V+ + G I+ G +D+ +
Sbjct: 113 GSTPLHLAADEGHLEIVEVLLKYGAD--VNAQDKFGKTAFDISIDNGNEDLAK 163
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 5/153 (3%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L AA+ G D V+ L+ V+ SGL PLH+AA+ G+ +IV+VLL H ++
Sbjct: 18 LLEAARAGQDDEVRILMANGAD--VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN- 74
Query: 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHIL 152
+ +TPL AA GH++++ VLL + + + G LHLAA GH+++V+ +L
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 153 KKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
K + DK G+TA +++ + ++ +L
Sbjct: 134 KHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 14/168 (8%)
Query: 95 GQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKK 154
G L+ AA G D + +L++ + ++G LHLAA GH+++V+ +LK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 155 DTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GAD-SAIAMLPDKFGNTALHVATRKK 211
+ D G T LH+A E+V +LL GAD +A+ D +G+T LH+A
Sbjct: 70 GADV-NAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV----DTWGDTPLHLAAIMG 124
Query: 212 RIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLER 259
+EIV E+L DVN K KTA DI+ +L E L++
Sbjct: 125 HLEIV-EVLLKHGADVNAQDKFGKTAFDIS----IDNGNEDLAEILQK 167
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L +AA GHL++V+ LL++ V+ G PLH+AA G+ +IV+VLL H
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGAD--VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 89 ELT 91
++
Sbjct: 138 DVN 140
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVL 83
G+T L +AA GHL++V+ LL++ V+ + G I+ G +D+ ++L
Sbjct: 113 GDTPLHLAAIMGHLEIVEVLLKHGAD--VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 131 NGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADS 190
NG+ LHLAAR GH++VVK +L+ + DK G+T LH+A + EVV+LLL A +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 191 AIAMLPDKFGNTALHVATRKKRIEIVNELL 220
+ DK G T LH+A R +E+V LL
Sbjct: 60 DVNA-KDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L +AA+NGHL+VVK LL+ V+ K +G PLH+AA G+ ++V++LL+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLS 119
++ ++ TPL AA GH++V+ +LL
Sbjct: 60 DVNAK-DKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 100 TPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLA 159
TPL AA GH++V+ +LL + NG+ LHLAAR GH++VVK +L+ +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV- 61
Query: 160 RHTDKKGQTALHMAVKGISSEVVRLLLGADS 190
DK G+T LH+A + EVV+LLL A +
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 63 SGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDP 122
+G PLH+AA G+ ++V++LL+ ++ ++ TPL AA GH++V+ +LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 123 HLLKIPRSNGKNALHLAARQGHVDVVKHILK 153
+ NG+ LHLAAR GH++VVK +L+
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L AA+ G D V+ L+ V+ + +SG PLH+AA +G+ +IV+VLL H ++
Sbjct: 18 LLEAARAGQDDEVRILMANGAD--VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNA 75
Query: 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHIL 152
+ TPL AA GH++++ VLL K+ + + G LHLAA GH+++V+ +L
Sbjct: 76 A-DKMGDTPLHLAALYGHLEIVEVLL-KNGADVNATDTYGFTPLHLAADAGHLEIVEVLL 133
Query: 153 KKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
K + DK G+TA +++ + ++ +L
Sbjct: 134 KYGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 95 GQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKK 154
G L+ AA G D + +L++ + +GK LHLAA +GH+++V+ +LK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
Query: 155 DTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLPDKFGNTALHVATRKKR 212
+ DK G T LH+A E+V +LL GAD D +G T LH+A
Sbjct: 70 GADV-NAADKMGDTPLHLAALYGHLEIVEVLLKNGAD---VNATDTYGFTPLHLAADAGH 125
Query: 213 IEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLER 259
+EIV LL DVN K KTA DI+ +L E L++
Sbjct: 126 LEIVEVLLKYG-ADVNAQDKFGKTAFDIS----IDNGNEDLAEILQK 167
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 8/139 (5%)
Query: 71 AASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRS 130
AA G D V++L+ + ++ S TPL AA KGH++++ VLL + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAE-DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM 79
Query: 131 NGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GA 188
G LHLAA GH+++V+ +LK + TD G T LH+A E+V +LL GA
Sbjct: 80 -GDTPLHLAALYGHLEIVEVLLKNGADV-NATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 189 DSAIAMLPDKFGNTALHVA 207
D DKFG TA ++
Sbjct: 138 D---VNAQDKFGKTAFDIS 153
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G+T L +AA GHL++V+ LL++ V+ G PLH+AA G+ +IV+VLL +
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGAD--VNAADKMGDTPLHLAALYGHLEIVEVLLKNGA 104
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVV 148
++ T TPL AA GH++++ VLL + GK A ++ G+ D+
Sbjct: 105 DVNAT-DTYGFTPLHLAADAGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISIDNGNEDLA 162
Query: 149 KHILKK 154
+ IL+K
Sbjct: 163 E-ILQK 167
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLL 84
+G+T L +AA GHL++V+ LL+ V+ G PLH+AA G+ +IV+VLL
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLKNGAD--VNATDTYGFTPLHLAADAGHLEIVEVLL 133
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 166 GQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDI 225
G+ L A G EV R+L+ A+ A D G T LH+A K +EIV E+L
Sbjct: 15 GKKLLEAARAGQDDEV-RILM-ANGADVNAEDDSGKTPLHLAAIKGHLEIV-EVLLKHGA 71
Query: 226 DVNILTKDRKTALDIAEGLPFSEETAELKECLERNGA 262
DVN K T L +A E+ E L +NGA
Sbjct: 72 DVNAADKMGDTPLHLAALYGH----LEIVEVLLKNGA 104
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 5/153 (3%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L AA+ G D V+ L+ V+ SGL PLH+AA+ G+ +IV+VLL H ++
Sbjct: 18 LLEAARAGQDDEVRILMANGAD--VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN- 74
Query: 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHIL 152
+ +TPL AA GH++++ VLL + + + G LHLAA GH+++V+ +L
Sbjct: 75 AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 153 KKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
K + DK G+TA +++ + ++ +L
Sbjct: 134 KHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 14/168 (8%)
Query: 95 GQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKK 154
G L+ AA G D + +L++ + ++G LHLAA GH+++V+ +LK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 155 DTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GAD-SAIAMLPDKFGNTALHVATRKK 211
+ D G T LH+A E+V +LL GAD +A+ D +G+T LH+A
Sbjct: 70 GADV-NAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV----DTWGDTPLHLAAIMG 124
Query: 212 RIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLER 259
+EIV E+L DVN K KTA DI+ +L E L++
Sbjct: 125 HLEIV-EVLLKHGADVNAQDKFGKTAFDIS----IDNGNEDLAEILQK 167
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHY 87
+G T L +AA GHL++V+ LL++ V+ G PLH+AA G+ +IV+VLL H
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKHGAD--VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 88 PELT 91
++
Sbjct: 137 ADVN 140
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 9/155 (5%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELT- 91
L AA+ G D V+ L+ V+ G PLH+AA G+ +IV+VLL + ++
Sbjct: 18 LLEAARAGRDDEVRILMA--NGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA 75
Query: 92 -KTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKH 150
TLG +TPL AA GH++++ VLL K+ + NG LHLAA +GH+++V+
Sbjct: 76 YDTLG---STPLHLAAHFGHLEIVEVLL-KNGADVNAKDDNGITPLHLAANRGHLEIVEV 131
Query: 151 ILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
+LK + DK G+TA +++ + ++ +L
Sbjct: 132 LLKYGADV-NAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLL 84
LG T L +AA GHL++V+ LL+ V+ K ++G+ PLH+AA++G+ +IV+VLL
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLK--NGADVNAKDDNGITPLHLAANRGHLEIVEVLL 133
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 139 AARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDK 198
AAR G D V+ IL + D G T LH+A E+V +LL + A D
Sbjct: 21 AARAGRDDEVR-ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLL-KNGADVNAYDT 78
Query: 199 FGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIA 241
G+T LH+A +EIV E+L + DVN + T L +A
Sbjct: 79 LGSTPLHLAAHFGHLEIV-EVLLKNGADVNAKDDNGITPLHLA 120
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L AA+ G D V+ L+ V+ + SG PLH+AA G+ +IV+VLL + ++
Sbjct: 18 LLEAARAGRDDEVRILMANGAD--VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN- 74
Query: 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHIL 152
+ + TPL AA GH++++ VLL K+ + G LHLAA GH+++V+ +L
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLL-KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 153 KKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
K + DK G+TA +++ + ++ +L
Sbjct: 134 KNGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 71 AASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRS 130
AA G D V++L+ + ++ S TPL AA GH++++ VLL + + +
Sbjct: 21 AARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA 79
Query: 131 NGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GA 188
G L LAA GH+++V+ +LK + D +G T LH+A E+V +LL GA
Sbjct: 80 -GMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 189 DSAIAMLPDKFGNTALHVA 207
D DKFG TA ++
Sbjct: 138 D---VNAQDKFGKTAFDIS 153
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 12/167 (7%)
Query: 95 GQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKK 154
G L+ AA G D + +L++ + ++G LHLAA GH+++V+ +LK
Sbjct: 11 GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKN 69
Query: 155 DTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLPDKFGNTALHVATRKKR 212
+ D G T L +A E+V +LL GAD D G+T LH+A
Sbjct: 70 GADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGH 125
Query: 213 IEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLER 259
+EIV E+L + DVN K KTA DI+ +L E L++
Sbjct: 126 LEIV-EVLLKNGADVNAQDKFGKTAFDIS----IDNGNEDLAEILQK 167
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 93/183 (50%), Gaps = 18/183 (9%)
Query: 31 TALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPEL 90
TAL A GH ++V+ LLQ V+ K ++G PLHIAAS G +IV+ LL ++
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV 100
Query: 91 TKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNG---KNALHLAARQGHVDV 147
+ Q+ TPL AA+K ++ +LL + P + A+H AA +G++ +
Sbjct: 101 N-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN----PDAKDHYEATAMHRAAAKGNLKM 155
Query: 148 VKHIL---KKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTAL 204
+ HIL K T + D +G T LH+A E +LL+ ++I + +K T L
Sbjct: 156 I-HILLYYKASTNI---QDTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPL 210
Query: 205 HVA 207
VA
Sbjct: 211 QVA 213
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 7/177 (3%)
Query: 68 LHIAASQGYQDIVQVLLD-HYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLK 126
LH A S G+ +IV+ LL P K + +PL AA+ G +++ LL K +
Sbjct: 45 LHWACSAGHTEIVEFLLQLGVPVNDKD--DAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 127 IPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL 186
+ NG LH AA + ++ +L+ D TA+H A + +++ +LL
Sbjct: 103 V-NQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILL 160
Query: 187 GADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEG 243
A + D GNT LH+A ++R+E +LL + I K+ KT L +A+G
Sbjct: 161 -YYKASTNIQDTEGNTPLHLACDEERVEEA-KLLVSQGASIYIENKEEKTPLQVAKG 215
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 106 ATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKK 165
A G ++ L + D L + + ALH A GH ++V+ +L+ + D
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDA 73
Query: 166 GQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELL 220
G + LH+A E+V+ LLG + + + ++ G T LH A K R EI LL
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQVNAV-NQNGCTPLHYAASKNRHEIAVMLL 127
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 140 ARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKF 199
A G ++ +K + D LA TD+ +TALH A +E+V LL + D
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDA 73
Query: 200 GNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIA 241
G + LH+A R EIV LL VN + ++ T L A
Sbjct: 74 GWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYA 114
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 93/183 (50%), Gaps = 18/183 (9%)
Query: 31 TALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPEL 90
TAL A GH ++V+ LLQ V+ K ++G PLHIAAS G +IV+ LL ++
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV 99
Query: 91 TKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNG---KNALHLAARQGHVDV 147
+ Q+ TPL AA+K ++ +LL + P + A+H AA +G++ +
Sbjct: 100 N-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN----PDAKDHYEATAMHRAAAKGNLKM 154
Query: 148 VKHIL---KKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTAL 204
+ HIL K T + D +G T LH+A E +LL+ ++I + +K T L
Sbjct: 155 I-HILLYYKASTNI---QDTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPL 209
Query: 205 HVA 207
VA
Sbjct: 210 QVA 212
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 7/177 (3%)
Query: 68 LHIAASQGYQDIVQVLLD-HYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLK 126
LH A S G+ +IV+ LL P K + +PL AA+ G +++ LL K +
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKD--DAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 127 IPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL 186
+ NG LH AA + ++ +L+ D TA+H A + +++ +LL
Sbjct: 102 V-NQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILL 159
Query: 187 GADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEG 243
A + D GNT LH+A ++R+E +LL + I K+ KT L +A+G
Sbjct: 160 -YYKASTNIQDTEGNTPLHLACDEERVEEA-KLLVSQGASIYIENKEEKTPLQVAKG 214
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 106 ATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKK 165
A G ++ L + D L + + ALH A GH ++V+ +L+ + D
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDA 72
Query: 166 GQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELL 220
G + LH+A E+V+ LLG + + + ++ G T LH A K R EI LL
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVNAV-NQNGCTPLHYAASKNRHEIAVMLL 126
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 140 ARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKF 199
A G ++ +K + D LA TD+ +TALH A +E+V LL + D
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDA 72
Query: 200 GNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIA 241
G + LH+A R EIV LL VN + ++ T L A
Sbjct: 73 GWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYA 113
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 9/155 (5%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELT- 91
L AA+ G D V+ L+ V+ + G PLH+AA G+ +IV+VLL + ++
Sbjct: 18 LLEAARAGQDDEVRILMANGAD--VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA 75
Query: 92 -KTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKH 150
+LG TPL AA +GH++V+ VLL K+ + NG LHLAA GH+++V+
Sbjct: 76 DDSLG---VTPLHLAADRGHLEVVEVLL-KNGADVNANDHNGFTPLHLAANIGHLEIVEV 131
Query: 151 ILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
+LK + DK G+TA +++ + ++ +L
Sbjct: 132 LLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 73/129 (56%), Gaps = 9/129 (6%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNS--GLDPLHIAASQGYQDIVQVLLD 85
+G T L +AA GHL++V+ LL K G + ++ G+ PLH+AA +G+ ++V+VLL
Sbjct: 46 VGWTPLHLAAYFGHLEIVEVLL----KNGADVNADDSLGVTPLHLAADRGHLEVVEVLLK 101
Query: 86 HYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHV 145
+ ++ + TPL AA GH++++ VLL K + GK A ++ G+
Sbjct: 102 NGADVNAN-DHNGFTPLHLAANIGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 146 DVVKHILKK 154
D+ + IL+K
Sbjct: 160 DLAE-ILQK 167
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 75/165 (45%), Gaps = 8/165 (4%)
Query: 95 GQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKK 154
G L+ AA G D + +L++ + G LHLAA GH+++V+ +LK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NASDHVGWTPLHLAAYFGHLEIVEVLLKN 69
Query: 155 DTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIE 214
+ D G T LH+A EVV +LL + A D G T LH+A +E
Sbjct: 70 GADV-NADDSLGVTPLHLAADRGHLEVVEVLL-KNGADVNANDHNGFTPLHLAANIGHLE 127
Query: 215 IVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLER 259
IV E+L DVN K KTA DI+ +L E L++
Sbjct: 128 IV-EVLLKHGADVNAQDKFGKTAFDIS----IDNGNEDLAEILQK 167
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 139 AARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDK 198
AAR G D V+ IL + +D G T LH+A E+V +LL + A D
Sbjct: 21 AARAGQDDEVR-ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL-KNGADVNADDS 78
Query: 199 FGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLE 258
G T LH+A + +E+V E+L + DVN + T L +A + E+ E L
Sbjct: 79 LGVTPLHLAADRGHLEVV-EVLLKNGADVNANDHNGFTPLHLAANIGH----LEIVEVLL 133
Query: 259 RNGA 262
++GA
Sbjct: 134 KHGA 137
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L AA+ G D V+ L+ V+ + G PLH+AA G+ +IV+VLL + ++
Sbjct: 18 LLEAARAGQDDEVRILMANGAD--VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN- 74
Query: 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHIL 152
L S +TPL AA +GH++++ VLL + + G LHLAA GH+++V+ +L
Sbjct: 75 ALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD-VNADDTIGSTPLHLAADTGHLEIVEVLL 133
Query: 153 KKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
K + DK G+TA +++ + ++ +L
Sbjct: 134 KYGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 95 GQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKK 154
G L+ AA G D + +L++ + + G LHLAAR GH+++V+ +LK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLLKN 69
Query: 155 DTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLPDKFGNTALHVATRKKR 212
+ D G T LH+A K E+V +LL GAD D G+T LH+A
Sbjct: 70 GADV-NALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD---VNADDTIGSTPLHLAADTGH 125
Query: 213 IEIVNELLALSDIDVNILTKDRKTALDIA 241
+EIV LL DVN K KTA DI+
Sbjct: 126 LEIVEVLLKYG-ADVNAQDKFGKTAFDIS 153
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 12/141 (8%)
Query: 71 AASQGYQDIVQVLLDHYPELT--KTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIP 128
AA G D V++L+ + ++ T G TPL AA GH++++ VLL + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGD---TPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 129 RSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL-- 186
S G LHLAA++GH+++V+ +LK + D G T LH+A E+V +LL
Sbjct: 78 FS-GSTPLHLAAKRGHLEIVEVLLKYGADV-NADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 187 GADSAIAMLPDKFGNTALHVA 207
GAD DKFG TA ++
Sbjct: 136 GAD---VNAQDKFGKTAFDIS 153
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 59/92 (64%), Gaps = 7/92 (7%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G+T L +AA+ GHL++V+ LL+ V+ SG PLH+AA +G+ +IV+VLL +
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGAD--VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Query: 89 ELT--KTLGQSNATPLITAATKGHVDVLHVLL 118
++ T+G +TPL AA GH++++ VLL
Sbjct: 105 DVNADDTIG---STPLHLAADTGHLEIVEVLL 133
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVL 83
+G T L +AA GHL++V+ LL+Y V+ + G I+ G +D+ ++L
Sbjct: 112 IGSTPLHLAADTGHLEIVEVLLKYGAD--VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L AA+ G D V+ L+ V+ + G PLH+AA G+ +IV+VLL H ++
Sbjct: 18 LLEAARAGQDDEVRILMANGAD--VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNA 75
Query: 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHIL 152
TPL AA GH++++ VLL + + G LHLAA +GH+++V+ +L
Sbjct: 76 R-DTDGWTPLHLAADNGHLEIVEVLLKYGAD-VNAQDAYGLTPLHLAADRGHLEIVEVLL 133
Query: 153 KKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
K + DK G+TA +++ + ++ +L
Sbjct: 134 KHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
Query: 102 LITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQL-AR 160
L+ AA G D + +L++ + G LHLAA GH ++V+ +LK + AR
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 161 HTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLPDKFGNTALHVATRKKRIEIVNE 218
TD G T LH+A E+V +LL GAD D +G T LH+A + +EIV E
Sbjct: 77 DTD--GWTPLHLAADNGHLEIVEVLLKYGAD---VNAQDAYGLTPLHLAADRGHLEIV-E 130
Query: 219 LLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLER 259
+L DVN K KTA DI+ +L E L++
Sbjct: 131 VLLKHGADVNAQDKFGKTAFDIS----IDNGNEDLAEILQK 167
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L +AA GH ++V+ LL++ V+ + G PLH+AA G+ +IV+VLL Y
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGAD--VNARDTDGWTPLHLAADNGHLEIVEVLL-KYG 103
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSN--GKNALHLAARQGHVD 146
TPL AA +GH++++ VLL H + + GK A ++ G+ D
Sbjct: 104 ADVNAQDAYGLTPLHLAADRGHLEIVEVLLK---HGADVNAQDKFGKTAFDISIDNGNED 160
Query: 147 VVKHILKK 154
+ + IL+K
Sbjct: 161 LAE-ILQK 167
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHY 87
G T L + NGHL++++ LL+Y V+ SG PLH+AA +G+ +IV+VLL Y
Sbjct: 46 FGITPLHLVVNNGHLEIIEVLLKYAAD--VNASDKSGWTPLHLAAYRGHLEIVEVLL-KY 102
Query: 88 PELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDV 147
+ TPL AA GH++++ VLL + GK A ++ G+ D+
Sbjct: 103 GADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISIDNGNEDL 161
Query: 148 VKHILKK 154
+ IL+K
Sbjct: 162 AE-ILQK 167
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 139 AARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDK 198
AAR G D V+ IL + D G T LH+ V E++ +LL +A DK
Sbjct: 21 AARAGQDDEVR-ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKY-AADVNASDK 78
Query: 199 FGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIA 241
G T LH+A + +EIV LL DVN + T L +A
Sbjct: 79 SGWTPLHLAAYRGHLEIVEVLLKYG-ADVNAMDYQGYTPLHLA 120
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 166 GQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDI 225
G+ L A G EV R+L+ A+ A D FG T LH+ +EI+ LL +
Sbjct: 15 GKKLLEAARAGQDDEV-RILM-ANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYA-A 71
Query: 226 DVNILTKDRKTALDIA 241
DVN K T L +A
Sbjct: 72 DVNASDKSGWTPLHLA 87
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
GET L IA+ G + V+ LLQ + V K ++G PLH A + G+ +V++LL H
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNV--KDHAGWTPLHEACNHGHLKVVELLLQHK- 66
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLS 119
L T G N +PL AA GHVD++ +LLS
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 100 TPLITAATKGHVDVLHVLLSK--DPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQ 157
T L A+ KG + + LL DP + G LH A GH+ VV+ +L +
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDP---NVKDHAGWTPLHEACNHGHLKVVE-LLLQHKA 67
Query: 158 LARHTDKKGQTALHMAVKGISSEVVRLLL 186
L T + + LH A K ++V+LLL
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 30 ETALFIAAKNGHLDVVKELLQY 51
++ L AAKNGH+D+VK LL Y
Sbjct: 77 DSPLHDAAKNGHVDIVKLLLSY 98
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 109/265 (41%), Gaps = 69/265 (26%)
Query: 33 LFIAAKNGHLDVVKELLQ------YMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDH 86
L A +N +D+V++LL+ + +EG G PLH A +DIV++LL H
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEG-------GWTPLHNAVQMSREDIVELLLRH 81
Query: 87 Y--PELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIP---------------- 128
P L K G ATP I AA G V +L + LSK + +
Sbjct: 82 GADPVLRKKNG---ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 138
Query: 129 --------------------------RSNGKNALHLAARQGHVDVVKHILKKDTQLARHT 162
R G AL AA +GHV+V+K +L +
Sbjct: 139 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 198
Query: 163 DKKGQTAL-HMAVKGISSEV---VRLLL--GADSAIAMLPDKFGNTALHVATRKKRIEIV 216
D G+ AL H + S+V LLL GAD + + G T L +A KK + +V
Sbjct: 199 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR---GERGKTPLILAVEKKHLGLV 255
Query: 217 NELLALSDIDVNILTKDRKTALDIA 241
LL I++N D KTAL +A
Sbjct: 256 QRLLEQEHIEINDTDSDGKTALLLA 280
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 40/161 (24%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPL-HIAASQGYQD---IVQVLL 84
G TAL AA+ GH++V+K LL M + V+ N G + L H S D I +LL
Sbjct: 168 GATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLL 226
Query: 85 DHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGH 144
DH ++ G+ TPLI A K H+ ++ LL Q H
Sbjct: 227 DHGADVN-VRGERGKTPLILAVEKKHLGLVQRLLE----------------------QEH 263
Query: 145 VDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
+++ TD G+TAL +AV+ ++ LL
Sbjct: 264 IEI------------NDTDSDGKTALLLAVELKLKKIAELL 292
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 18/183 (9%)
Query: 31 TALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPEL 90
TAL A GH ++V+ LLQ V+ K ++G PLHIAAS G +IV+ LL +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV 99
Query: 91 TKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSN---GKNALHLAARQGHVDV 147
+ Q+ TPL AA+K ++ +LL + P + A+H AA +G++ +
Sbjct: 100 N-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN----PDAKDHYDATAMHRAAAKGNLKM 154
Query: 148 VKHIL---KKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTAL 204
V HIL K T + D +G T LH+A E + L+ ++I + +K T L
Sbjct: 155 V-HILLFYKASTNI---QDTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPL 209
Query: 205 HVA 207
VA
Sbjct: 210 QVA 212
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 7/177 (3%)
Query: 68 LHIAASQGYQDIVQVLLD-HYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLK 126
LH A S G+ +IV+ LL P K + +PL AA+ G +++ LL K H+
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKD--DAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 127 IPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL 186
+ NG LH AA + ++ +L+ D TA+H A + ++V +LL
Sbjct: 102 V-NQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILL 159
Query: 187 GADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEG 243
A + D GNT LH+A ++R+E + L + I K+ KT L +A+G
Sbjct: 160 FY-KASTNIQDTEGNTPLHLACDEERVEEA-KFLVTQGASIYIENKEEKTPLQVAKG 214
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 106 ATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKK 165
A G +D L + D L + + ALH A GH ++V+ +L+ + D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDA 72
Query: 166 GQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELL 220
G + LH+A E+V+ LL + + + ++ G T LH A K R EI LL
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLL 126
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 140 ARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKF 199
A G +D +K + D LA TD+ +TALH A +E+V LL + D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDA 72
Query: 200 GNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIA 241
G + LH+A EIV LL + VN + ++ T L A
Sbjct: 73 GWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYA 113
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 18/183 (9%)
Query: 31 TALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPEL 90
TAL A GH ++V+ LLQ V+ K ++G PLHIAAS G +IV+ LL +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHV 99
Query: 91 TKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSN---GKNALHLAARQGHVDV 147
+ Q+ TPL AA+K ++ +LL + P + A+H AA +G++ +
Sbjct: 100 N-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN----PDAKDHYDATAMHRAAAKGNLKM 154
Query: 148 VKHIL---KKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTAL 204
V HIL K T + D +G T LH+A E + L+ ++I + +K T L
Sbjct: 155 V-HILLFYKASTNI---QDTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPL 209
Query: 205 HVA 207
VA
Sbjct: 210 QVA 212
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 7/177 (3%)
Query: 68 LHIAASQGYQDIVQVLLD-HYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLK 126
LH A S G+ +IV+ LL P K + +PL AA+ G +++ LL K H+
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKD--DAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 127 IPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL 186
+ NG LH AA + ++ +L+ D TA+H A + ++V +LL
Sbjct: 102 V-NQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILL 159
Query: 187 GADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEG 243
A + D GNT LH+A ++R+E + L + I K+ KT L +A+G
Sbjct: 160 FY-KASTNIQDTEGNTPLHLACDEERVEEA-KFLVTQGASIYIENKEEKTPLQVAKG 214
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 140 ARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKF 199
A G +D +K + D LA TD+ +TALH A +E+V LL + D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDA 72
Query: 200 GNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIA 241
G + LH+A R EIV LL + VN + ++ T L A
Sbjct: 73 GWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYA 113
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 106 ATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKK 165
A G +D L + D L + + ALH A GH ++V+ +L+ + D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDA 72
Query: 166 GQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELL 220
G + LH+A E+V+ LL + + + ++ G T LH A K R EI LL
Sbjct: 73 GWSPLHIAASAGRDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLL 126
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 110/265 (41%), Gaps = 69/265 (26%)
Query: 33 LFIAAKNGHLDVVKELLQ------YMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDH 86
L A +N +D+V++LL+ + +EG G PLH A +DIV++LL H
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEG-------GWTPLHNAVQMSREDIVELLLRH 61
Query: 87 Y--PELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIP---------------- 128
P L K ++ ATP + AA G V +L + LSK + +
Sbjct: 62 GADPVLRK---KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 118
Query: 129 --------------------------RSNGKNALHLAARQGHVDVVKHILKKDTQLARHT 162
R G AL AA +GHV+V+K +L +
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 178
Query: 163 DKKGQTAL-HMAVKGISSEV---VRLLL--GADSAIAMLPDKFGNTALHVATRKKRIEIV 216
D G+ AL H + S+V LLL GAD + + G T L +A KK + +V
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV---RGERGKTPLILAVEKKHLGLV 235
Query: 217 NELLALSDIDVNILTKDRKTALDIA 241
LL I++N D KTAL +A
Sbjct: 236 QRLLEQEHIEINDTDSDGKTALLLA 260
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 40/161 (24%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPL-HIAASQGYQD---IVQVLL 84
G TAL AA+ GH++V+K LL M + V+ N G + L H S D I +LL
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLL 206
Query: 85 DHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGH 144
DH ++ G+ TPLI A K H+ ++ LL Q H
Sbjct: 207 DHGADVN-VRGERGKTPLILAVEKKHLGLVQRLLE----------------------QEH 243
Query: 145 VDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
+++ TD G+TAL +AV+ ++ LL
Sbjct: 244 IEI------------NDTDSDGKTALLLAVELKLKKIAELL 272
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L AA G D V+ L+ V+ ++GL PLH+AA+ G +IV+VLL + ++
Sbjct: 10 LLEAAAAGQDDEVRILMANGAD--VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA 67
Query: 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHIL 152
+ + TPL AA GH++++ VLL + R+ G LHLAA G +++V+ +L
Sbjct: 68 S-DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRA-GWTPLHLAALSGQLEIVEVLL 125
Query: 153 KKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
K + D G TA +++ ++ +L
Sbjct: 126 KHGADV-NAQDALGLTAFDISINQGQEDLAEIL 157
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 14/126 (11%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L +AA NG L++V+ LL+ V+ ++G+ PLH+AA G+ +IV+VLL H
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKNGAD--VNASDSAGITPLHLAAYDGHLEIVEVLLKHGA 96
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAA-----RQG 143
++ ++ TPL AA G ++++ VLL + N ++AL L A QG
Sbjct: 97 DVN-AYDRAGWTPLHLAALSGQLEIVEVLLKHGADV------NAQDALGLTAFDISINQG 149
Query: 144 HVDVVK 149
D+ +
Sbjct: 150 QEDLAE 155
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 22/155 (14%)
Query: 139 AARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLP 196
AA G D V+ IL + TD G T LH+A E+V +LL GAD +
Sbjct: 13 AAAAGQDDEVR-ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS--- 68
Query: 197 DKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKEC 256
D G T LH+A +EIV E+L DVN + T L +A S + E+ E
Sbjct: 69 DSAGITPLHLAAYDGHLEIV-EVLLKHGADVNAYDRAGWTPLHLA---ALSGQL-EIVEV 123
Query: 257 LERNGA-VRARE----------LNQPRDELRRTVK 280
L ++GA V A++ +NQ +++L ++
Sbjct: 124 LLKHGADVNAQDALGLTAFDISINQGQEDLAEILQ 158
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 91/192 (47%), Gaps = 14/192 (7%)
Query: 32 ALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELT 91
AL AA VKE+LQ T + V G PL+IA +I + L+D ++
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 92 KTLGQSNATPLITAATKGHVDVLHVLLS-KDPHLLKIPRSNGKNALHLAARQGHVDVVKH 150
S+ +P + A +G ++L +L P L K R G NAL AA +GH+D VK
Sbjct: 67 LQNSISD-SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGG-NALIPAAEKGHIDNVKL 124
Query: 151 ILKKDTQLARHTDKKGQTALHMAV-----KGISSEVVRLLL--GADSAIAMLPDKFGNTA 203
+L+ + + G TAL AV + ++V+LL+ GAD +I D G TA
Sbjct: 125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI---KDNSGRTA 181
Query: 204 LHVATRKKRIEI 215
+ A +K EI
Sbjct: 182 MDYANQKGYTEI 193
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 31/162 (19%)
Query: 71 AASQGYQDIVQVLL---------DHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKD 121
AA G D V++L+ DHY TPL AA GH++++ VLL
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGR----------TPLHMAAAVGHLEIVEVLLRNG 58
Query: 122 PHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEV 181
+ + +NG LHLAA GH+++V+ +LK + D G T L++A E+
Sbjct: 59 ADVNAVD-TNGTTPLHLAASLGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEI 116
Query: 182 VRLLL--GADSAIAMLPDKFGNTALHVATRKKRIEIVNELLA 221
V +LL GAD DKFG TA ++ I+I NE LA
Sbjct: 117 VEVLLKHGAD---VNAQDKFGKTAFDIS-----IDIGNEDLA 150
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L +AA GHL++V+ LL+ V+ +G PLH+AAS G+ +IV+VLL +
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLR--NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA 92
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLL 118
++ + TPL AA GH++++ VLL
Sbjct: 93 DVNAK-DATGITPLYLAAYWGHLEIVEVLL 121
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
Query: 102 LITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARH 161
L+ AA G D + +L++ G+ LH+AA GH+++V+ +L+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHY-GRTPLHMAAAVGHLEIVEVLLRNGADV-NA 63
Query: 162 TDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLPDKFGNTALHVATRKKRIEIVNEL 219
D G T LH+A E+V +LL GAD D G T L++A +EIV E+
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGAD---VNAKDATGITPLYLAAYWGHLEIV-EV 119
Query: 220 LALSDIDVNILTKDRKTALDIA 241
L DVN K KTA DI+
Sbjct: 120 LLKHGADVNAQDKFGKTAFDIS 141
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDH 86
G T L +AA GHL++V+ LL+Y V+ K +G+ PL++AA G+ +IV+VLL H
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGAD--VNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 21/218 (9%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G TAL A + ++D+VK L++ ++ N G PLH AAS GY DI + L+
Sbjct: 73 GLTALHQACIDDNVDMVKFLVE--NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA 130
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQ----GH 144
+ + + TPL A + ++L +++ ++ R + + ARQ GH
Sbjct: 131 HVGAVNSEGD-TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189
Query: 145 VDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTAL 204
++ V+H K G TALH+A +EV++LL+ A + + D G T L
Sbjct: 190 INDVRHA------------KSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPL 236
Query: 205 HVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAE 242
H A + E +L + D+ + K +TA D+A+
Sbjct: 237 HAAAHWGKEEAC-RILVENLCDMEAVNKVGQTAFDVAD 273
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 131 NGKNALHLAARQGHVDVVKHILKKDTQL-ARHTDKKGQTALHMAVKGISSEVVRLLLGAD 189
+G LH AA+ GH + VK +L K + AR D G T LH+A K +E+V+LLL A
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD--GNTPLHLAAKNGHAEIVKLLL-AK 64
Query: 190 SAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVN 228
A K GNT H+A + EIV +LL DVN
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIV-KLLDAKGADVN 102
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L AAKNGH + VK+LL V+ +S G PLH+AA G+ +IV++LL
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGAD--VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSK 120
++ N TP A GH +++ +L +K
Sbjct: 67 DVNARSKDGN-TPEHLAKKNGHHEIVKLLDAK 97
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 100 TPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQL- 158
TPL AA GH + + LLSK + +G LHLAA+ GH ++VK +L K +
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 159 ARHTDKKGQTALHMAVKGISSEVVRLL--LGAD 189
AR D G T H+A K E+V+LL GAD
Sbjct: 70 ARSKD--GNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 164 KKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALS 223
K G T LH A K +E V+ LL + A K GNT LH+A + EIV LLA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 224 DIDVNILTKDRKTALDIAE 242
DVN +KD T +A+
Sbjct: 66 -ADVNARSKDGNTPEHLAK 83
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 194 MLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAEL 253
M K GNT LH A + E V +LL+ DVN +KD T L +A AE+
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLA----AKNGHAEI 57
Query: 254 KECLERNGA---VRARELNQPR 272
+ L GA R+++ N P
Sbjct: 58 VKLLLAKGADVNARSKDGNTPE 79
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 10/184 (5%)
Query: 67 PLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSK--DPHL 124
PLH A + VQ LL P L Q PL + + ++ LLSK + +L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 125 LKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDK---KGQTALHMAVKGISSEV 181
P +G H+A G+++VVK + D L +K +G T LH+AV EV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLY--DRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 182 VRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTAL--D 239
+ L+ + A + DKF LH A ++++ L L VN K T L
Sbjct: 123 SQFLI-ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 240 IAEG 243
+AEG
Sbjct: 182 LAEG 185
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 1/146 (0%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T IA G+L+VVK L K ++ +N G+ LH+A + + ++ Q L+++
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVV 148
+ + + N PL AA+ G + ++ +L + G L A +GH D
Sbjct: 132 SV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 190
Query: 149 KHILKKDTQLARHTDKKGQTALHMAV 174
+++K D KG A +A+
Sbjct: 191 VLLVEKYGAEYDLVDNKGAKAEDVAL 216
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 136 LHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAM- 194
LH A + V+ +L L D+ G+ LH +V + E+ LL + +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 195 -LPDKFGNTALHVATRKKRIEIVNELLALS-DIDVNILTKDRKTALDIAEGLPFSEETAE 252
PD G T H+A +E+V L D+N +T T L +A G ++ E
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG----KKWFE 121
Query: 253 LKECLERNGA-VRARE-LNQ 270
+ + L NGA VR ++ NQ
Sbjct: 122 VSQFLIENGASVRIKDKFNQ 141
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Query: 62 NSGLDPLHIAASQGYQDIVQVLLDH--YPELTKTLGQSNATPLITAATKGHVDVLHVLLS 119
+SG P HIA S G ++V+ L D P+L K Q T L A K +V L+
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG-VTCLHLAVGKKWFEVSQFLIE 128
Query: 120 KDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISS 179
++I + LH AA G + +++ + DK+G T L A+
Sbjct: 129 NGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187
Query: 180 EVVRLLLGADSAIAMLPDKFGNTALHVATRKK 211
+ LL+ A L D G A VA ++
Sbjct: 188 DAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 10/184 (5%)
Query: 67 PLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSK--DPHL 124
PLH A + VQ LL P L Q PL + + ++ LLSK + +L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 125 LKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDK---KGQTALHMAVKGISSEV 181
P +G H+A G+++VVK + D L +K +G T LH+AV EV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLY--DRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 182 VRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTAL--D 239
+ L+ + A + DKF LH A ++++ L L VN K T L
Sbjct: 123 SQFLI-ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 240 IAEG 243
+AEG
Sbjct: 182 LAEG 185
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 1/146 (0%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T IA G+L+VVK L K ++ +N G+ LH+A + + ++ Q L+++
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVV 148
+ + + N PL AA+ G + ++ +L + G L A +GH D
Sbjct: 132 SV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 190
Query: 149 KHILKKDTQLARHTDKKGQTALHMAV 174
+++K D KG A +A+
Sbjct: 191 VLLVEKYGAEYDLVDNKGAKAEDVAL 216
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 136 LHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAM- 194
LH A + V+ +L L D+ G+ LH +V + E+ LL + +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 195 -LPDKFGNTALHVATRKKRIEIVNELLALS-DIDVNILTKDRKTALDIAEGLPFSEETAE 252
PD G T H+A +E+V L D+N +T T L +A G ++ E
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG----KKWFE 121
Query: 253 LKECLERNGA-VRARE-LNQ 270
+ + L NGA VR ++ NQ
Sbjct: 122 VSQFLIENGASVRIKDKFNQ 141
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Query: 62 NSGLDPLHIAASQGYQDIVQVLLDH--YPELTKTLGQSNATPLITAATKGHVDVLHVLLS 119
+SG P HIA S G ++V+ L D P+L K Q T L A K +V L+
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG-VTCLHLAVGKKWFEVSQFLIE 128
Query: 120 KDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISS 179
++I + LH AA G + +++ + DK+G T L A+
Sbjct: 129 NGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187
Query: 180 EVVRLLLGADSAIAMLPDKFGNTALHVATRKK 211
+ LL+ A L D G A VA ++
Sbjct: 188 DAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 10/184 (5%)
Query: 67 PLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSK--DPHL 124
PLH A + VQ LL P L Q PL + + ++ LLSK + +L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 125 LKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDK---KGQTALHMAVKGISSEV 181
P +G H+A G+++VVK + D L +K +G T LH+AV EV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLY--DRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 182 VRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTAL--D 239
+ L+ + A + DKF LH A ++++ L L VN K T L
Sbjct: 123 SQFLI-ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 240 IAEG 243
+AEG
Sbjct: 182 LAEG 185
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 1/146 (0%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T IA G+L+VVK L K ++ +N G+ LH+A + + ++ Q L+++
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVV 148
+ + + N PL AA+ G + ++ +L + G L A +GH D
Sbjct: 132 SV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 190
Query: 149 KHILKKDTQLARHTDKKGQTALHMAV 174
+++K D KG A +A+
Sbjct: 191 VLLVEKYGAEYDLVDNKGAKAEDVAL 216
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 136 LHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAM- 194
LH A + V+ +L L D+ G+ LH +V + E+ LL + +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 195 -LPDKFGNTALHVATRKKRIEIVNELLALS-DIDVNILTKDRKTALDIAEGLPFSEETAE 252
PD G T H+A +E+V L D+N +T T L +A G ++ E
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG----KKWFE 121
Query: 253 LKECLERNGA-VRARE-LNQ 270
+ + L NGA VR ++ NQ
Sbjct: 122 VSQFLIENGASVRIKDKFNQ 141
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Query: 62 NSGLDPLHIAASQGYQDIVQVLLDH--YPELTKTLGQSNATPLITAATKGHVDVLHVLLS 119
+SG P HIA S G ++V+ L D P+L K Q T L A K +V L+
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG-VTCLHLAVGKKWFEVSQFLIE 128
Query: 120 KDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISS 179
++I + LH AA G + +++ + DK+G T L A+
Sbjct: 129 NGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187
Query: 180 EVVRLLLGADSAIAMLPDKFGNTALHVATRKK 211
+ LL+ A L D G A VA ++
Sbjct: 188 DAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 11/161 (6%)
Query: 68 LHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLL--SKDPHLL 125
+H A+QG D ++ L L + TPLI A+ G ++ + LL DPH+L
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 126 KIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
R ++AL LA+ G+ D+V +L++D + + D G T L AV+G + V L
Sbjct: 66 AKER---ESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKCVEAL 121
Query: 186 LGADSAIAMLPDKFGNTALHVAT----RKKRIEIVNELLAL 222
L + + D G T + +A RK + I N +L L
Sbjct: 122 LARGADLTTEADS-GYTPMDLAVALGYRKVQQVIENHILKL 161
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 135 ALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAI 192
++H A QG +D +K L+K L D++G T L A E VR LL GAD I
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 193 AMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTAL 238
K +AL +A+ +IV LL D+D+NI + T L
Sbjct: 65 LA---KERESALSLASTGGYTDIVGLLLE-RDVDINIYDWNGGTPL 106
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L A + H+ V+ LL ++ +++SG P+ +A + GY+ + QV+ +H
Sbjct: 102 GGTPLLYAVRGNHVKCVEALLARGAD--LTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Query: 89 ELTKTLGQSNATP 101
+L QSN P
Sbjct: 160 KLF----QSNLVP 168
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 57 VSLKSNSGLDPLHIAASQGYQDIVQVLLDHY--PELTKTLGQSNATPLITAATKGHVDVL 114
++ ++N PLH+A +I + LL PEL G TPL A +G + +
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGN---TPLHLACEQGCLASV 94
Query: 115 HVLLSK--DPHL---LKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTA 169
VL PHL LK NG LHLA+ G++ +V+ ++ + G+TA
Sbjct: 95 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 154
Query: 170 LHMAVKGISSEVVRLLL--GAD 189
LH+AV + ++V LLL GAD
Sbjct: 155 LHLAVDLQNPDLVSLLLKCGAD 176
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 65/155 (41%), Gaps = 15/155 (9%)
Query: 100 TPLITAATKGHVDVLHVLLSK--DPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQ 157
TPL A ++ LL DP L G LHLA QG + V + + T
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDF---RGNTPLHLACEQGCLASVGVLTQSCTT 103
Query: 158 LARH-----TDKKGQTALHMAVKGISSEVVRLL--LGADSAIAMLPDKFGNTALHVATRK 210
H T+ G T LH+A +V LL LGAD A P G TALH+A
Sbjct: 104 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCN-GRTALHLAVDL 161
Query: 211 KRIEIVNELLALSDIDVNILTKDRKTALDIAEGLP 245
+ ++V+ LL DVN +T + + G P
Sbjct: 162 QNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRP 195
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLD-- 85
L +T L +A ++ + LL L+ G PLH+A QG V VL
Sbjct: 44 LQQTPLHLAVITNQPEIAEALLGAGCDP--ELRDFRGNTPLHLACEQGCLASVGVLTQSC 101
Query: 86 ---HYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQ 142
H + K + T L A+ G++ ++ +L+S + NG+ ALHLA
Sbjct: 102 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161
Query: 143 GHVDVVKHILKKDTQLARHT 162
+ D+V +LK + R T
Sbjct: 162 QNPDLVSLLLKCGADVNRVT 181
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 131 NGKNALHLA----ARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL 186
+G + LHLA + ++V++ + K D + QT LH+AV E+ LL
Sbjct: 7 DGDSFLHLAIIHEEKALTMEVIRQV-KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 65
Query: 187 GADSAIAMLPDKFGNTALHVATRK 210
GA L D GNT LH+A +
Sbjct: 66 GA-GCDPELRDFRGNTPLHLACEQ 88
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 9/192 (4%)
Query: 31 TALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLD--PLHIAASQGYQDIVQVLLDHYP 88
T L AA N +D+VK Y++K + + L+ PLH A QG+ +V L+ +
Sbjct: 44 TLLHWAAINNRIDLVK---YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGH-VDV 147
+ + G+ + + AA GH ++ L++K + + NG L AA + H VD
Sbjct: 101 DPSLIDGEG-CSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDP 158
Query: 148 VKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVA 207
+ +L + + TALH AV ++ V+ LLL A + + K G +AL +A
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIK-GESALDLA 217
Query: 208 TRKKRIEIVNEL 219
++K + ++N L
Sbjct: 218 KQRKNVWMINHL 229
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 96 QSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILK-- 153
+ N T L AA +D++ +SK + ++ LH A RQGH+ +V ++K
Sbjct: 40 KENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG 99
Query: 154 KDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRI 213
D L D +G + +H+A + + +V L+ + M+ D+ G T L A +
Sbjct: 100 ADPSL---IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM-DQNGMTPLMWAAYRTHS 155
Query: 214 EIVNELLALSDIDVNILTKDRK-TALDIA 241
LL ++ VN+ K K TAL A
Sbjct: 156 VDPTRLLLTFNVSVNLGDKYHKNTALHWA 184
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 125 LKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVK-GISSEVVR 183
++ P LH AA +D+VK+ + K + + T LH A + G S VV+
Sbjct: 35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94
Query: 184 LL-LGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTAL 238
L+ GAD + L D G + +H+A + IV L+A DV+++ ++ T L
Sbjct: 95 LMKYGADPS---LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ-DVDMMDQNGMTPL 146
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 57 VSLKSNSGLDPLHIAASQGYQDIVQVLLDHY--PELTKTLGQSNATPLITAATKGHVDVL 114
++ ++N PLH+A +I + LL PEL G TPL A +G + +
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGN---TPLHLACEQGCLASV 91
Query: 115 HVLLSK--DPHL---LKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTA 169
VL PHL LK NG LHLA+ G++ +V+ ++ + G+TA
Sbjct: 92 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 151
Query: 170 LHMAVKGISSEVVRLLL--GAD 189
LH+AV + ++V LLL GAD
Sbjct: 152 LHLAVDLQNPDLVSLLLKCGAD 173
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 65/155 (41%), Gaps = 15/155 (9%)
Query: 100 TPLITAATKGHVDVLHVLLSK--DPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQ 157
TPL A ++ LL DP L G LHLA QG + V + + T
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDF---RGNTPLHLACEQGCLASVGVLTQSCTT 100
Query: 158 LARH-----TDKKGQTALHMAVKGISSEVVRLL--LGADSAIAMLPDKFGNTALHVATRK 210
H T+ G T LH+A +V LL LGAD A P G TALH+A
Sbjct: 101 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPCN-GRTALHLAVDL 158
Query: 211 KRIEIVNELLALSDIDVNILTKDRKTALDIAEGLP 245
+ ++V+ LL DVN +T + + G P
Sbjct: 159 QNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRP 192
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLD-- 85
L +T L +A ++ + LL L+ G PLH+A QG V VL
Sbjct: 41 LQQTPLHLAVITNQPEIAEALLGAGCDP--ELRDFRGNTPLHLACEQGCLASVGVLTQSC 98
Query: 86 ---HYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQ 142
H + K + T L A+ G++ ++ +L+S + NG+ ALHLA
Sbjct: 99 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 158
Query: 143 GHVDVVKHILKKDTQLARHT 162
+ D+V +LK + R T
Sbjct: 159 QNPDLVSLLLKCGADVNRVT 178
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 131 NGKNALHLA----ARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL 186
+G + LHLA + ++V++ + K D + QT LH+AV E+ LL
Sbjct: 4 DGDSFLHLAIIHEEKALTMEVIRQV-KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 62
Query: 187 GADSAIAMLPDKFGNTALHVATRK 210
GA L D GNT LH+A +
Sbjct: 63 GA-GCDPELRDFRGNTPLHLACEQ 85
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L +AA+ GHL++V+ LL+Y V+ + N G+ PLH+AA +G+ +IV+VLL H
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGAD--VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
Query: 89 ELT 91
++
Sbjct: 105 DVN 107
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 139 AARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLP 196
AAR G D V+ IL + D+ G T LH+A + E+V +LL GAD
Sbjct: 21 AARAGQDDEVR-ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD---VNAE 76
Query: 197 DKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIA 241
D FG T LH+A + +EIV E+L DVN K KTA DI+
Sbjct: 77 DNFGITPLHLAAIRGHLEIV-EVLLKHGADVNAQDKFGKTAFDIS 120
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L AA+ G D V+ L+ V+ GL PLH+AA G+ +IV+VLL + ++
Sbjct: 18 LLEAARAGQDDEVRILMANGAD--VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA 75
Query: 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHIL 152
TPL AA +GH++++ VLL + GK A ++ G+ D+ + IL
Sbjct: 76 E-DNFGITPLHLAAIRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAE-IL 132
Query: 153 KK 154
+K
Sbjct: 133 QK 134
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 48 LLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAAT 107
LL Y+ V++ ++G LH + S +VQ LLD ++ +P++ A
Sbjct: 99 LLDYV----VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL 154
Query: 108 ---KGHVDVLHVLLSKDPHLLKIPRSN------GKNALHLAARQGHVDVVKHILKKDTQL 158
K D+ VL L ++ N G+ AL LA G VDVVK +L + +
Sbjct: 155 ATLKTQDDIETVL-----QLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV 209
Query: 159 ARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNE 218
D G TAL A + E+ LLL S L D+ G+TAL VA + EI +
Sbjct: 210 NVQ-DDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASM 268
Query: 219 LLALSDI 225
L + +I
Sbjct: 269 LYSRMNI 275
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 164 KKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALS 223
+ GQTAL +AV +VV+ LL ++ + + D G+TAL A EI LLA+
Sbjct: 181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDD-GSTALMCACEHGHKEIAGLLLAVP 239
Query: 224 DIDVNILTKDRKTALDIA 241
D+++ +D TAL +A
Sbjct: 240 SCDISLTDRDGSTALMVA 257
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G+TAL +A +G +DVVK LL + V+++ + G L A G+++I +LL P
Sbjct: 183 GQTALMLAVSHGRVDVVKALLA--CEADVNVQDDDGSTALMCACEHGHKEIAGLLL-AVP 239
Query: 89 ELTKTL-GQSNATPLITAATKGHVDVLHVLLSK 120
+L + +T L+ A G ++ +L S+
Sbjct: 240 SCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 103/233 (44%), Gaps = 33/233 (14%)
Query: 31 TALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPEL 90
T L +AA + +V+ LLQ+ V K GL PLH A S G+ ++ ++LL H
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGAD--VHAKDKGGLVPLHNACSYGHYEVTELLLKH-GAC 116
Query: 91 TKTLGQSNATPLITAATKGHVDVLHVLLSK--DPHLLKIPRSNGKNALHLAARQGHVDVV 148
+ TPL AA+K V+V +LLS DP L+ +GK+A+ +A + +
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC---HGKSAVDMAPTPELRERL 173
Query: 149 KHILKKDT--QLARHTD------------------KKGQTALHMAVKGI---SSEVVRLL 185
+ K + Q AR D + +TALH AV + +V LL
Sbjct: 174 TYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELL 233
Query: 186 LGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTAL 238
L + + F T LHVA + +++ E+L +N L +TAL
Sbjct: 234 LRKGANVNEKNKDF-MTPLHVAAERAHNDVM-EVLHKHGAKMNALDSLGQTAL 284
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 17/103 (16%)
Query: 136 LHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIA 193
LH+AA + H DV++ +L K D GQTALH A + RLLL G+D +I
Sbjct: 251 LHVAAERAHNDVME-VLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309
Query: 194 MLPD----KFGNTALHVATRKKRIEIVNELLAL--SDIDVNIL 230
L + GN A+ +I++E + SD+D +L
Sbjct: 310 SLQGFTAAQMGNEAVQ--------QILSESTPMRTSDVDYRLL 344
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHY 87
LG+TAL AA GHL + LL Y + S+ S G AA G + + Q+L +
Sbjct: 279 LGQTALHRAALAGHLQTCRLLLSYGSDP--SIISLQGF----TAAQMGNEAVQQILSEST 332
Query: 88 P 88
P
Sbjct: 333 P 333
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 11/161 (6%)
Query: 68 LHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLL--SKDPHLL 125
+H A+QG D ++ L L + TPLI A+ G ++ + LL DPH+L
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 126 KIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
R ++AL LA+ G+ D+V +L++D + + D G T L AV G + V L
Sbjct: 66 AKER---ESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVHGNHVKCVEAL 121
Query: 186 LGADSAIAMLPDKFGNTALHVAT----RKKRIEIVNELLAL 222
L + + D G T + +A RK + I N +L L
Sbjct: 122 LARGADLTTEADS-GYTPMDLAVALGYRKVQQVIENHILKL 161
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 135 ALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAI 192
++H A QG +D +K L+K L D++G T L A E VR LL GAD I
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 193 AMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTAL 238
K +AL +A+ +IV LL D+D+NI + T L
Sbjct: 65 LA---KERESALSLASTGGYTDIVGLLLE-RDVDINIYDWNGGTPL 106
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L A H+ V+ LL ++ +++SG P+ +A + GY+ + QV+ +H
Sbjct: 102 GGTPLLYAVHGNHVKCVEALLARGAD--LTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Query: 89 ELTKTLGQSNATP 101
+L QSN P
Sbjct: 160 KLF----QSNLVP 168
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L A + G D V+ L+ V+ ++G+ PLH+AA +G+ +IV+VLL H ++
Sbjct: 18 LLEATRAGQDDEVRILMANGAD--VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHIL 152
+ TPL AAT GH++++ VLL + GK A ++ G+ D+ + IL
Sbjct: 76 S-DSWGRTPLHLAATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDISIDNGNEDLAE-IL 132
Query: 153 KK 154
+K
Sbjct: 133 QK 134
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L +AAK GHL++V+ LL++ V+ + G PLH+AA+ G+ +IV+VLL++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD--VNASDSWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 89 ELT 91
++
Sbjct: 105 DVN 107
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 139 AARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLP 196
A R G D V+ IL + D G T LH+A K E+V +LL GAD +
Sbjct: 21 ATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS--- 76
Query: 197 DKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIA 241
D +G T LH+A +EIV LL DVN K KTA DI+
Sbjct: 77 DSWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDIS 120
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 9/124 (7%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L A + G D V+ L+ V+ ++G+ PLH+AA +G+ +IV+VLL H ++
Sbjct: 18 LLEATRAGQDDEVRILMANGAD--VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 93 T--LGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKH 150
+ G+ TPL AAT GH++++ VLL + GK A ++ G+ D+ +
Sbjct: 76 SDIWGR---TPLHLAATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDISIDNGNEDLAE- 130
Query: 151 ILKK 154
IL+K
Sbjct: 131 ILQK 134
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L +AAK GHL++V+ LL++ V+ G PLH+AA+ G+ +IV+VLL++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD--VNASDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 89 ELT 91
++
Sbjct: 105 DVN 107
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 139 AARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLP 196
A R G D V+ IL + D G T LH+A K E+V +LL GAD +
Sbjct: 21 ATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS--- 76
Query: 197 DKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKEC 256
D +G T LH+A +EIV LL DVN K KTA DI+ +L E
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDIS----IDNGNEDLAEI 131
Query: 257 LER 259
L++
Sbjct: 132 LQK 134
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 14/199 (7%)
Query: 65 LDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHL 124
+ PLH A G+ V++LL H ++ + TPL A G D +++LL H
Sbjct: 93 VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFNACVSGSWDCVNLLLQ---HG 148
Query: 125 LKI-PRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVR 183
+ P S+ + +H AAR+GHV+ V ++ + G T L++A + V+
Sbjct: 149 ASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVK 207
Query: 184 LLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEG 243
LL +S + K ++ LH R E+ L+ D + K+ + + E
Sbjct: 208 KLL--ESGADVNQGKGQDSPLHAVVRTASEELACLLM---DFGADTQAKNAEGKRPV-EL 261
Query: 244 LPFSEETAELKECLERNGA 262
+P A+L LER GA
Sbjct: 262 VPPESPLAQLF--LEREGA 278
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 110/250 (44%), Gaps = 17/250 (6%)
Query: 36 AAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLG 95
AA +GH ++ L+ V++ + + PLH A G+ V++LL H ++
Sbjct: 10 AAIHGHQLSLRNLIS--QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA 67
Query: 96 QSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKD 155
+ TPL A G D +++LL + P S+ + +H AAR+GHV+ V ++
Sbjct: 68 DWH-TPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYG 124
Query: 156 TQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEI 215
+ G T L++A + V+ LL +S + K ++ LH R E+
Sbjct: 125 GNIDHKISHLG-TPLYLACENQQRACVKKLL--ESGADVNQGKGQDSPLHAVARTASEEL 181
Query: 216 VNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNGAVRARELNQPRDEL 275
L+ D + K+ + + E +P A+L LER G +L + R +
Sbjct: 182 ACLLM---DFGADTQAKNAEGKRPV-ELVPPESPLAQLF--LEREGPPSLMQLCRLR--I 233
Query: 276 RRTVKEIKQH 285
R+ I+QH
Sbjct: 234 RKCFG-IQQH 242
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 9/124 (7%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELT- 91
L A + G D V+ L+ V+ ++G+ PLH+AA +G+ +IV+VLL H ++
Sbjct: 18 LLEATRAGQDDEVRILMANGAD--VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 92 -KTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKH 150
G+ TPL AAT GH++++ VLL + GK A ++ G+ D+ +
Sbjct: 76 RDIWGR---TPLHLAATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDISIDNGNEDLAE- 130
Query: 151 ILKK 154
IL+K
Sbjct: 131 ILQK 134
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L +AAK GHL++V+ LL++ V+ + G PLH+AA+ G+ +IV+VLL++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD--VNARDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 89 ELT 91
++
Sbjct: 105 DVN 107
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 139 AARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLP 196
A R G D V+ IL + D G T LH+A K E+V +LL GAD
Sbjct: 21 ATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNAR 76
Query: 197 DKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKEC 256
D +G T LH+A +EIV LL DVN K KTA DI+ +L E
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDIS----IDNGNEDLAEI 131
Query: 257 LER 259
L++
Sbjct: 132 LQK 134
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 12/162 (7%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
GETAL +AA+ D K LL+ ++ N G PLH A S Q + Q+LL +
Sbjct: 22 GETALHLAARYSRSDAAKRLLE--ASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRA 79
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVV 148
TPLI AA +L L++ + + GK+ALH AA +VD
Sbjct: 80 TDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAA 138
Query: 149 KHILK----KDTQLARHTDKKGQTALHMAVKGISSEVVRLLL 186
+LK KD Q + K +T L +A + S E ++LL
Sbjct: 139 VVLLKNGANKDMQ-----NNKEETPLFLAAREGSYETAKVLL 175
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 147 VVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHV 206
V+ + + L TD+ G+TALH+A + S+ + LL A SA A + D G T LH
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADAXIQDNMGRTPLHA 61
Query: 207 A 207
A
Sbjct: 62 A 62
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 132 GKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GAD 189
G+ ALHLAAR D K +L+ A D G+T LH AV + V ++LL A
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHAAVSADAQGVFQILLRNRAT 80
Query: 190 SAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTAL 238
A + D G T L +A R +E + E L S DVN + K+AL
Sbjct: 81 DLDARMHD--GTTPLILAARLA-LEGMLEDLINSHADVNAVDDLGKSAL 126
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 75/158 (47%), Gaps = 24/158 (15%)
Query: 71 AASQGYQDIVQVLL-DHYPELTKTLGQSNATPLITAATKGHVDVLHVLL----SKDPHLL 125
AA G D V++L+ + P T LG S PL AA GH VLL S+D
Sbjct: 9 AARAGQDDEVRILMANGAPFTTDWLGTS---PLHLAAQYGHFSTTEVLLRAGVSRDART- 64
Query: 126 KIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
K+ R+ LH+AA +GH ++V+ +LK + D TALH A + EVV LL
Sbjct: 65 KVDRT----PLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELL 119
Query: 186 L--GADSAIAMLPDKFGNTALHVATRKKRIEIVNELLA 221
+ GAD KF TA ++ I+ NE LA
Sbjct: 120 IKYGAD---VHTQSKFCKTAFDIS-----IDNGNEDLA 149
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLD--PLHIAASQGYQDIVQVLLD 85
LG + L +AA+ GH + LL + GVS + + +D PLH+AAS+G+ +IV+VLL
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLL----RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 86 H 86
H
Sbjct: 89 H 89
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 32/141 (22%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDP----------LHIAASQGYQD 78
G T L AA +G + VV+ LLQ +G DP L +A S+GY D
Sbjct: 52 GFTPLMWAAAHGQIAVVEFLLQ------------NGADPQLLGKGRESALSLACSKGYTD 99
Query: 79 IVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSK--DPHLLKIPRSNGKNAL 136
IV++LLD ++ + + TPL+ A HV + +LL DP I +G N++
Sbjct: 100 IVKMLLDCGVDVNE-YDWNGGTPLLYAVHGNHVKCVKMLLESGADP---TIETDSGYNSM 155
Query: 137 HLAARQGHVDVVK----HILK 153
LA G+ V + H+LK
Sbjct: 156 DLAVALGYRSVQQVIESHLLK 176
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L A H+ VK LL+ + +++++SG + + +A + GY+ + QV+ H
Sbjct: 118 GGTPLLYAVHGNHVKCVKMLLE--SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 175
Query: 89 ELTKTL 94
+L + +
Sbjct: 176 KLLQNI 181
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 36 AAKNGHLDVVKELLQYMTK-EGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTL 94
A KNG LD VK+ Y+ K E V+ G PLH AA G +I++ LL ++
Sbjct: 14 ALKNGDLDEVKD---YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP- 69
Query: 95 GQSNATPLITAATKGHVDVLHVLLSK 120
+ + TPL++A +GHV + +LLSK
Sbjct: 70 DKHHITPLLSAVYEGHVSCVKLLLSK 95
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 32/141 (22%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDP----------LHIAASQGYQD 78
G T L AA +G + VV+ LLQ +G DP L +A S+GY D
Sbjct: 34 GFTPLMWAAAHGQIAVVEFLLQ------------NGADPQLLGKGRESALSLACSKGYTD 81
Query: 79 IVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSK--DPHLLKIPRSNGKNAL 136
IV++LLD ++ + + TPL+ A HV + +LL DP I +G N++
Sbjct: 82 IVKMLLDCGVDVNE-YDWNGGTPLLYAVHGNHVKCVKMLLESGADP---TIETDSGYNSM 137
Query: 137 HLAARQGHVDVVK----HILK 153
LA G+ V + H+LK
Sbjct: 138 DLAVALGYRSVQQVIESHLLK 158
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L A H+ VK LL+ + +++++SG + + +A + GY+ + QV+ H
Sbjct: 100 GGTPLLYAVHGNHVKCVKMLLE--SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 157
Query: 89 ELTKT 93
+L +
Sbjct: 158 KLLQN 162
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 9/124 (7%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNS--GLDPLHIAASQGYQDIVQVLLDHYPEL 90
L AA+ G D V+ +T G + +N G PLH+AA G+ +IV+VLL + ++
Sbjct: 18 LLEAARAGQDDEVR----ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV 73
Query: 91 TKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKH 150
T G + TPL AA H++++ VLL K + GK A ++ G+ D+ +
Sbjct: 74 NAT-GNTGRTPLHLAAWADHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAE- 130
Query: 151 ILKK 154
IL+K
Sbjct: 131 ILQK 134
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L +AA GHL++V+ LL+ V+ N+G PLH+AA + +IV+VLL H
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGAD--VNATGNTGRTPLHLAAWADHLEIVEVLLKHGA 104
Query: 89 ELT 91
++
Sbjct: 105 DVN 107
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 132 GKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GAD 189
G LHLAA GH+++V+ +LK + T G+T LH+A E+V +LL GAD
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADV-NATGNTGRTPLHLAAWADHLEIVEVLLKHGAD 105
Query: 190 SAIAMLPDKFGNTALHVATRKKRIEIVNELLA 221
DKFG TA ++ I+ NE LA
Sbjct: 106 ---VNAQDKFGKTAFDIS-----IDNGNEDLA 129
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 139 AARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDK 198
AAR G D V+ IL + D G T LH+A E+V +LL + A
Sbjct: 21 AARAGQDDEVR-ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL-KNGADVNATGN 78
Query: 199 FGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLE 258
G T LH+A +EIV E+L DVN K KTA DI+ +L E L+
Sbjct: 79 TGRTPLHLAAWADHLEIV-EVLLKHGADVNAQDKFGKTAFDIS----IDNGNEDLAEILQ 133
Query: 259 R 259
+
Sbjct: 134 K 134
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 166 GQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDI 225
G+ L A G EV +L A+ A D +G+T LH+A +EIV E+L +
Sbjct: 15 GKKLLEAARAGQDDEV--RILTANGADVNANDYWGHTPLHLAAMLGHLEIV-EVLLKNGA 71
Query: 226 DVNILTKDRKTALDIA 241
DVN +T L +A
Sbjct: 72 DVNATGNTGRTPLHLA 87
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 36 AAKNGHLDVVKELLQYMTK-EGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTL 94
A KNG LD VK+ Y+ K E V+ G PLH AA G +I++ LL ++
Sbjct: 9 ALKNGDLDEVKD---YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP- 64
Query: 95 GQSNATPLITAATKGHVDVLHVLLSK 120
+ + TPL++A +GHV + +LLSK
Sbjct: 65 DKHHITPLLSAVYEGHVSCVKLLLSK 90
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 32/141 (22%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDP----------LHIAASQGYQD 78
G T L AA +G + VV+ LLQ +G DP L +A S+GY D
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQ------------NGADPQLLGKGRESALSLACSKGYTD 83
Query: 79 IVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSK--DPHLLKIPRSNGKNAL 136
IV++LLD ++ + + TPL+ A HV + +LL DP I +G N++
Sbjct: 84 IVKMLLDCGVDVNE-YDWNGGTPLLYAVHGNHVKCVKMLLESGADP---TIETDSGYNSM 139
Query: 137 HLAARQGHVDVVK----HILK 153
LA G+ V + H+LK
Sbjct: 140 DLAVALGYRSVQQVIESHLLK 160
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L A H+ VK LL+ + +++++SG + + +A + GY+ + QV+ H
Sbjct: 102 GGTPLLYAVHGNHVKCVKMLLE--SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159
Query: 89 ELTKTL 94
+L + +
Sbjct: 160 KLLQNI 165
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 134 NALHLAARQGHVDVVKHILKKDTQLARHT-DKKGQTALHMAVKGISSEVVRLLLGADSAI 192
N LH AA++G++ ++ L D ++ + DK G TAL+ A G ++V L +
Sbjct: 75 NPLHEAAKRGNLSWLRECL--DNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIE 132
Query: 193 AMLPDKFGNTALHVATRKKRIEIVNELLA 221
+K G+TALH A K +IV LLA
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLA 161
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 4/135 (2%)
Query: 57 VSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHV 116
V+ ++ S +PLH AA +G ++ LD+ + L ++ +T L A GH D++
Sbjct: 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEX 124
Query: 117 LLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLA-RHTDKKGQTALHMAVK 175
L ++ L G ALH AA +G+ D+V+ +L K + R+ +KK A A
Sbjct: 125 LFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK--LAFDXATN 182
Query: 176 GISSEVVRLLLGADS 190
+ +++ G D+
Sbjct: 183 AACASLLKKKQGTDA 197
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNS--GLDPLHIAASQGYQDIVQVLL 84
G TAL+ A GH D+V+ L T+ + L + G LH AA +GY DIVQ+LL
Sbjct: 106 GSTALYWACHGGHKDIVEXLF---TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 70/156 (44%), Gaps = 10/156 (6%)
Query: 131 NGKNALHLAARQGHVDVVKHILKKDTQLARHTD---KKGQTALHMAVKGISSEVVRLLLG 187
+G LH+A QG++ V ++ Q R D QT LH+AV VVRLL+
Sbjct: 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67
Query: 188 ADSAIAMLPDKFGNTALHVATRKKRIEIVNELL---ALSDIDVNILTKDRKTALDIAEGL 244
A A M D+ G TA H+A + + LL A +D+ D TAL +A
Sbjct: 68 A-GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126
Query: 245 PFSEETAELKECLERNGAVRARELNQPRDELRRTVK 280
+ET +L LER + A ++ R L V+
Sbjct: 127 EC-QETVQL--LLERGADIDAVDIKSGRSPLIHAVE 159
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 33/210 (15%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLK--SNSGLDPLHIAASQGYQDIVQVL--- 83
G+T L IA G+L V L+ + G L +N PLH+A +V++L
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 84 ------LDHYPELTKTLGQSNATP-----LITAATKGHVDVLHVLLSKDPHLLKIPRSNG 132
LD + + L + +P L+ +A G +D L+ +G
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD------------LEARNYDG 116
Query: 133 KNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADS 190
ALH+A + V+ +L++ + K G++ L AV+ S +V+LLL GA+
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 176
Query: 191 AIAMLPDKFGNTALHVATRKKRIEIVNELL 220
M G++ALH A+ + + +V L+
Sbjct: 177 NAQMY---SGSSALHSASGRGLLPLVRTLV 203
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 90/211 (42%), Gaps = 23/211 (10%)
Query: 64 GLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSN---ATPLITAATKGHVDVLHVLLSK 120
G PLHIA QG V L++ + + + L N TPL A V+ +L++
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 121 DPHLLKIPRSNGKNALHLAARQGHVDVVKHILKK------DTQLARHTDKKGQTALHMAV 174
+ + R +G+ A HLA ++ +L D + AR+ D G TALH+AV
Sbjct: 69 GASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYD--GLTALHVAV 124
Query: 175 KGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDR 234
E V+LLL + I + K G + L A + +V +LL +VN
Sbjct: 125 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV-QLLLQHGANVNAQMYSG 183
Query: 235 KTALDIAEG---LPF------SEETAELKEC 256
+AL A G LP S + LK C
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSSLKNC 214
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNS--GLDPLHIAASQGYQDIVQVLLDH 86
G+TA +A ++ ++ LL + L++ + GL LH+A + Q+ VQ+LL+
Sbjct: 79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER 138
Query: 87 YPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVD 146
++ +S +PLI A + ++ +LL + + +G +ALH A+ +G +
Sbjct: 139 GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLP 197
Query: 147 VVKHILKK 154
+V+ +++
Sbjct: 198 LVRTLVRS 205
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
GETAL +AA+ D K LL+ +++ N G PLH A S Q + Q+L+ +
Sbjct: 57 GETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVV 148
TPLI AA +L L++ + + GK+ALH AA +VD
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAA 173
Query: 149 KHILK----KDTQLARHTDKKGQTALHMAVKGISSEVVRLLL 186
+LK KD Q + + +T L +A + S E ++LL
Sbjct: 174 VVLLKNGANKDMQ-----NNREETPLFLAAREGSYETAKVLL 210
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 147 VVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHV 206
V+ + + L TD+ G+TALH+A + S+ + LL A SA A + D G T LH
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHA 96
Query: 207 A 207
A
Sbjct: 97 A 97
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 132 GKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GAD 189
G+ ALHLAAR D K +L+ A D G+T LH AV + V ++L+ A
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115
Query: 190 SAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTAL 238
A + D G T L +A R +E + E L S DVN + K+AL
Sbjct: 116 DLDARMHD--GTTPLILAARLA-VEGMLEDLINSHADVNAVDDLGKSAL 161
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
GETAL +AA+ D K LL+ +++ N G PLH A S Q + Q+L+ +
Sbjct: 58 GETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 115
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVV 148
TPLI AA +L L++ + + GK+ALH AA +VD
Sbjct: 116 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAA 174
Query: 149 KHILK----KDTQLARHTDKKGQTALHMAVKGISSEVVRLLL 186
+LK KD Q + + +T L +A + S E ++LL
Sbjct: 175 VVLLKNGANKDMQ-----NNREETPLFLAAREGSYETAKVLL 211
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 147 VVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHV 206
V+ + + L TD+ G+TALH+A + S+ + LL A SA A + D G T LH
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHA 97
Query: 207 A 207
A
Sbjct: 98 A 98
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 132 GKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GAD 189
G+ ALHLAAR D K +L+ A D G+T LH AV + V ++L+ A
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 116
Query: 190 SAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTAL 238
A + D G T L +A R +E + E L S DVN + K+AL
Sbjct: 117 DLDARMHD--GTTPLILAARLA-VEGMLEDLINSHADVNAVDDLGKSAL 162
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
GETAL +AA+ D K LL+ +++ N G PLH A S Q + Q+L+ +
Sbjct: 25 GETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVV 148
TPLI AA +L L++ + + GK+ALH AA +VD
Sbjct: 83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAA 141
Query: 149 KHILK----KDTQLARHTDKKGQTALHMAVKGISSEVVRLLL 186
+LK KD Q + + +T L +A + S E ++LL
Sbjct: 142 VVLLKNGANKDMQ-----NNREETPLFLAAREGSYETAKVLL 178
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 147 VVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHV 206
V+ + + L TD+ G+TALH+A + S+ + LL A SA A + D G T LH
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHA 64
Query: 207 A 207
A
Sbjct: 65 A 65
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 132 GKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GAD 189
G+ ALHLAAR D K +L+ A D G+T LH AV + V ++L+ A
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83
Query: 190 SAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTAL 238
A + D G T L +A R +E + E L S DVN + K+AL
Sbjct: 84 DLDARMHD--GTTPLILAARLA-VEGMLEDLINSHADVNAVDDLGKSAL 129
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 59 LKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLL 118
+++N PL +AA +G + +VLLDH+ T + P A + H D++ +L
Sbjct: 153 MQNNREETPLFLAAREGSYETAKVLLDHFANRDIT-DHMDRLPRDIAQERMHHDIVRLL- 210
Query: 119 SKDPHLLKIPRSNG 132
+ +L++ P+ +G
Sbjct: 211 -DEYNLVRSPQLHG 223
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 139 AARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLP 196
AAR G D V+ IL + D+KG T LH+A E+V +LL GAD
Sbjct: 21 AARAGQDDEVR-ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD---VNAH 76
Query: 197 DKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKEC 256
D G+T LH+A +EIV E+L DVN K KTA DI+ +L E
Sbjct: 77 DNDGSTPLHLAALFGHLEIV-EVLLKHGADVNAQDKFGKTAFDIS----IDNGNEDLAEI 131
Query: 257 LER 259
L++
Sbjct: 132 LQK 134
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 95 GQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKK 154
G L+ AA G D + +L++ + R G LHLAA H+++V+ +LK
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNANDRK-GNTPLHLAADYDHLEIVEVLLKH 69
Query: 155 DTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLPDKFGNTALHVATRKKR 212
+ H D G T LH+A E+V +LL GAD DKFG TA ++
Sbjct: 70 GADVNAH-DNDGSTPLHLAALFGHLEIVEVLLKHGAD---VNAQDKFGKTAFDIS----- 120
Query: 213 IEIVNELLA 221
I+ NE LA
Sbjct: 121 IDNGNEDLA 129
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G T L +AA HL++V+ LL++ V+ N G PLH+AA G+ +IV+VLL H
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGAD--VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGA 104
Query: 89 ELT 91
++
Sbjct: 105 DVN 107
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNS--GLDPLHIAASQGYQDIVQVLLDHYPEL 90
L AA+ G D V+ L+ G + +N G PLH+AA + +IV+VLL H ++
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV 73
Query: 91 TKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSN--GKNALHLAARQGHVDVV 148
+TPL AA GH++++ VLL H + + GK A ++ G+ D+
Sbjct: 74 NAH-DNDGSTPLHLAALFGHLEIVEVLLK---HGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 149 KHILKK 154
+ IL+K
Sbjct: 130 E-ILQK 134
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 166 GQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDI 225
G+ L A G EV R+L+ A+ A D+ GNT LH+A +EIV E+L
Sbjct: 15 GKKLLEAARAGQDDEV-RILM-ANGADVNANDRKGNTPLHLAADYDHLEIV-EVLLKHGA 71
Query: 226 DVNILTKDRKTALDIA 241
DVN D T L +A
Sbjct: 72 DVNAHDNDGSTPLHLA 87
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 80 VQVLLDHYPELTKTLGQSNATPLIT----------AATKGHVDVLHVLLSKDPHLLKIPR 129
+QV+ PE+ + L A P + AA G +D L LL + I
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIED 100
Query: 130 SNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
+ G LHLAA++GH+ VV+ ++K H + KG TA +A +EVV L+
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 80 VQVLLDHYPELTKTLGQSNATPLIT----------AATKGHVDVLHVLLSKDPHLLKIPR 129
+QV+ PE+ + L A P + AA G +D L LL + I
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV-NIED 100
Query: 130 SNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
+ G LHLAA++GH+ VV+ ++K H + KG TA +A +EVV L+
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 80 VQVLLDHYPELTKTLGQSNATPLIT----------AATKGHVDVLHVLLSKDPHLLKIPR 129
+QV+ PE+ + L A P + AA G +D L LL + I
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV-NIED 100
Query: 130 SNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
+ G LHLAA++GH+ VV+ ++K H + KG TA +A +EVV L+
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Query: 139 AARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GAD-SAIAML 195
AAR G D V+ IL + DK G T LH+A E+V +LL GAD +AI
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI--- 76
Query: 196 PDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKE 255
D G T LH+ +EIV E+L DVN K KTA DI+ +L E
Sbjct: 77 -DAIGETPLHLVAMYGHLEIV-EVLLKHGADVNAQDKFGKTAFDIS----IDNGNEDLAE 130
Query: 256 CLER 259
L++
Sbjct: 131 ILQK 134
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 13/126 (10%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELT- 91
L AA+ G D V+ L+ V+ + GL PLH+AA + +IV+VLL + ++
Sbjct: 18 LLEAARAGQDDEVRILMANGAD--VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA 75
Query: 92 -KTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSN--GKNALHLAARQGHVDVV 148
+G+ TPL A GH++++ VLL H + + GK A ++ G+ D+
Sbjct: 76 IDAIGE---TPLHLVAMYGHLEIVEVLLK---HGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 149 KHILKK 154
+ IL+K
Sbjct: 130 E-ILQK 134
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVL 83
+GET L + A GHL++V+ LL++ V+ + G I+ G +D+ ++L
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGAD--VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 166 GQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDI 225
G+ L A G EV R+L+ A+ A DK G T LH+A +EIV E+L +
Sbjct: 15 GKKLLEAARAGQDDEV-RILM-ANGADVNAEDKVGLTPLHLAAMNDHLEIV-EVLLKNGA 71
Query: 226 DVNILTKDRKTAL 238
DVN + +T L
Sbjct: 72 DVNAIDAIGETPL 84
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 80 VQVLLDHYPELTKTLGQSNATPLIT----------AATKGHVDVLHVLLSKDPHLLKIPR 129
+QV+ PE+ + L A P + AA G +D L LL + I
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIED 100
Query: 130 SNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
+ G LHLAA++GH+ VV+ ++K H + KG TA +A +EVV L+
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 80 VQVLLDHYPELTKTLGQSNATPLIT----------AATKGHVDVLHVLLSKDPHLLKIPR 129
+QV+ PE+ + L A P + AA G +D L LL + I
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV-NIED 100
Query: 130 SNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
+ G LHLAA++GH+ VV+ ++K H + KG TA +A +EVV L+
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 94 LGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILK 153
+G L+ AA G D + +L++ + + NG LHLAAR GH++VVK +L+
Sbjct: 2 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLLE 60
Query: 154 KDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
+ DK G+TA +++ + ++ +L
Sbjct: 61 AGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 139 AARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDK 198
AAR G D V+ ++ +A DK G T LH+A + EVV+LLL A + + DK
Sbjct: 13 AARAGQDDEVRILMANGADVAA-KDKNGSTPLHLAARNGHLEVVKLLLEAGADVNA-QDK 70
Query: 199 FGNTALHVATRKKRIEIVNELLA 221
FG TA ++ I+ NE LA
Sbjct: 71 FGKTAFDIS-----IDNGNEDLA 88
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 166 GQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDI 225
G+ L A G EV R+L+ A+ A DK G+T LH+A R +E+V +LL +
Sbjct: 7 GKKLLEAARAGQDDEV-RILM-ANGADVAAKDKNGSTPLHLAARNGHLEVV-KLLLEAGA 63
Query: 226 DVNILTKDRKTALDIA 241
DVN K KTA DI+
Sbjct: 64 DVNAQDKFGKTAFDIS 79
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVL 83
G T L +AA+NGHL+VVK LL+ V+ + G I+ G +D+ ++L
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGAD--VNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 94 LGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILK 153
+G L+ AA G D + +L++ + + NG LHLAAR GH++VVK +L+
Sbjct: 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLLE 78
Query: 154 KDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
+ DK G+TA +++ + ++ +L
Sbjct: 79 AGADVXAQ-DKFGKTAFDISIDNGNEDLAEIL 109
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 14/101 (13%)
Query: 127 IPRSN------GKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSE 180
+PR + GK L AAR G D V+ ++ +A DK G T LH+A + E
Sbjct: 14 VPRGSHMGSDLGKKLLE-AARAGQDDEVRILMANGADVAA-KDKNGSTPLHLAARNGHLE 71
Query: 181 VVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLA 221
VV+LLL A + + DKFG TA ++ I+ NE LA
Sbjct: 72 VVKLLLEAGADVXA-QDKFGKTAFDIS-----IDNGNEDLA 106
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 166 GQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDI 225
G+ L A G EV R+L+ A+ A DK G+T LH+A R +E+V +LL +
Sbjct: 25 GKKLLEAARAGQDDEV-RILM-ANGADVAAKDKNGSTPLHLAARNGHLEVV-KLLLEAGA 81
Query: 226 DVNILTKDRKTALDIA 241
DV K KTA DI+
Sbjct: 82 DVXAQDKFGKTAFDIS 97
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVL 83
G T L +AA+NGHL+VVK LL+ V + G I+ G +D+ ++L
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGAD--VXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 12/162 (7%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G TAL +AA D K LL+ +++ N G PLH A S Q + Q+L+ +
Sbjct: 57 GATALHLAAAYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVV 148
TPLI AA +L L++ + + GK+ALH AA +VD
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAA 173
Query: 149 KHILK----KDTQLARHTDKKGQTALHMAVKGISSEVVRLLL 186
+LK KD Q + + +T L +A + S E ++LL
Sbjct: 174 VVLLKNGANKDMQ-----NNREETPLFLAAREGSYETAKVLL 210
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 147 VVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHV 206
V+ + + L TD+ G TALH+A S+ + LL A SA A + D G T LH
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEA-SADANIQDNMGRTPLHA 96
Query: 207 A 207
A
Sbjct: 97 A 97
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 74/168 (44%), Gaps = 23/168 (13%)
Query: 100 TPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLA 159
TP TAA K L LL +D + + NG+ AL A G V+ + + L
Sbjct: 47 TPWWTAARKADEQALSQLL-EDRDVDAVD-ENGRTALLFVAGLGSDKCVRLLAEAGADLD 104
Query: 160 RHTDKKGQTALHMAVKGISSEVVRLL--LGADSAIAMLPDKFGNTALHVATRKKRIEIVN 217
+ G TALHMA + EVV L LGAD + D+ G TAL E+
Sbjct: 105 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV---EDERGLTAL---------ELAR 152
Query: 218 ELLALSDIDVNILTKDRKTALD----IAEGLPFSEETAELKECLERNG 261
E+L + N + R+ L+ + EG F E AE+ E +E+ G
Sbjct: 153 EILKTTPKG-NPMQFGRRIGLEKVINVLEGQVF--EYAEVDEIVEKRG 197
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 126 KIPRSNG----KNALHLAAR---QGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGIS 178
KIP +NG + ALHLA R + + +V +++ L + T KG TALH +
Sbjct: 159 KIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT-GKGSTALHYCCLTDN 217
Query: 179 SEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELL 220
+E ++LLL ++I + ++ G T L +A R K E ELL
Sbjct: 218 AECLKLLLRGKASIE-IANESGETPLDIAKRLKH-EHCEELL 257
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92
L AA+ G D V+ L+ V+ K GL PL++A + G+ +IV+VLL + ++
Sbjct: 18 LLEAARAGQDDEVRILMANGAD--VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN- 74
Query: 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHIL 152
+ TPL AA GH+++ VLL K + GK A ++ G+ D+ + IL
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLL-KHGADVNAQDKFGKTAFDISIGNGNEDLAE-IL 132
Query: 153 KK 154
+K
Sbjct: 133 QK 134
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 139 AARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GAD-SAIAML 195
AAR G D V+ IL + D+ G T L++A E+V +LL GAD +A+
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV--- 76
Query: 196 PDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKE 255
D G T LH+A +EI E+L DVN K KTA DI+ G +E+ AE+ +
Sbjct: 77 -DAIGFTPLHLAAFIGHLEIA-EVLLKHGADVNAQDKFGKTAFDISIG-NGNEDLAEILQ 133
Query: 256 CL 257
L
Sbjct: 134 KL 135
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 100 TPLITAATKGHVDVLHVLLS-KDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQL 158
TP TAA K L LL +D + NG+ AL A G V+ + + L
Sbjct: 46 TPWWTAARKADEQALSQLLEDRDVDAVD---ENGRTALLFVAGLGSDKCVRLLAEAGADL 102
Query: 159 ARHTDKKGQTALHMAVKGISSEVVRLL--LGADSAIAMLPDKFGNTALHVA 207
+ G TALHMA + EVV L LGAD + D+ G TAL +A
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE---DERGLTALELA 150
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 163 DKKGQTALHMAVKGISSE-VVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLA 221
D+ G+TAL + V G+ S+ VRLL A + + + G TALH+A R E+V L+
Sbjct: 73 DENGRTAL-LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131
Query: 222 LSDIDVNILTKDRKTALDIA 241
L D+ + + TAL++A
Sbjct: 132 LG-ADIEVEDERGLTALELA 150
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G TAL A KN L + ++LL + V+ K SG PL + GY ++ LL+H
Sbjct: 68 GSTALIWAVKNNRLGIAEKLLSKGSN--VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125
Query: 89 ELTKTLGQSNATPLITAATKGHVDVLHVLL 118
+ TPLI A+ G +++ LL
Sbjct: 126 NVNDR-NLEGETPLIVASKYGRSEIVKKLL 154
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 98 NATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQ 157
N TPL+ A G + + L+ ++ L+ G AL A + + + + +L K +
Sbjct: 35 NRTPLMVACMLGMENAIDKLV-ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN 93
Query: 158 LARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLPDKFGNTALHVATRKKRIEI 215
+ D G+T L ++ SE+ LL GA+ L G T L VA++ R EI
Sbjct: 94 V-NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE---GETPLIVASKYGRSEI 149
Query: 216 VNELLAL-SDIDVNILT 231
V +LL L +DI LT
Sbjct: 150 VKKLLELGADISARDLT 166
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVL 83
GET L +A+K G ++VK+LL+ +S + +GL A G Q+++++
Sbjct: 134 GETPLIVASKYGRSEIVKKLLELGAD--ISARDLTGLTAEASARIFGRQEVIKIF 186
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 73/186 (39%), Gaps = 26/186 (13%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHY 87
LG+TAL +AA G V++L Y GV + G LH+A VLL
Sbjct: 44 LGQTALHLAAILGEASTVEKL--YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR 101
Query: 88 PELTKT-----LGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRS------------ 130
P + L QS T+ VD +P + PR
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDS-----QPNPENEEEPRDEDWRLQLEAENY 156
Query: 131 NGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GA 188
+G LH+A ++V+ + L + G+T LH+AV+ ++ V+ LLL GA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 189 DSAIAM 194
D M
Sbjct: 217 DPTARM 222
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 130 SNGKNALHLAARQGHVDVVKHIL--KKDTQLARHTDKKGQTALHMA-VKGISSEVVRLLL 186
+G ALHLA H + +L + + GQTALH+A + G +S V +L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY- 65
Query: 187 GADSAIAMLPDKFGNTALHVATR 209
A A ++ ++ G+TALH+A R
Sbjct: 66 -AAGAGVLVAERGGHTALHLACR 87
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 73/186 (39%), Gaps = 26/186 (13%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHY 87
LG+TAL +AA G V++L Y GV + G LH+A VLL
Sbjct: 44 LGQTALHLAAILGEASTVEKL--YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR 101
Query: 88 PELTKT-----LGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRS------------ 130
P + L QS T+ VD +P + PR
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDS-----QPNPENEEEPRDEDWRLQLEAENY 156
Query: 131 NGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GA 188
+G LH+A ++V+ + L + G+T LH+AV+ ++ V+ LLL GA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 189 DSAIAM 194
D M
Sbjct: 217 DPTARM 222
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 130 SNGKNALHLAARQGHVDVVKHIL--KKDTQLARHTDKKGQTALHMA-VKGISSEVVRLLL 186
+G ALHLA H + +L + + GQTALH+A + G +S V +L
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY- 65
Query: 187 GADSAIAMLPDKFGNTALHVATR 209
A A ++ ++ G+TALH+A R
Sbjct: 66 -AAGAGVLVAERGGHTALHLACR 87
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 102 LITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARH 161
L+ AA G D + +L++ + +G LHLAAR+GH+++V+ +LK +
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NA 63
Query: 162 TDKKGQTALHMAVKGISSEVVRLL 185
DK G+TA +++ + ++ +L
Sbjct: 64 QDKFGKTAFDISIDNGNEDLAEIL 87
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 166 GQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDI 225
G+ L A G EV R+L+ A+ A DK G T LH+A R+ +EIV E+L +
Sbjct: 3 GKKLLEAARAGQDDEV-RILM-ANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGA 59
Query: 226 DVNILTKDRKTALDIA 241
DVN K KTA DI+
Sbjct: 60 DVNAQDKFGKTAFDIS 75
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 139 AARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDK 198
AAR G D V+ IL + DK G T LH+A + E+V +LL A A DK
Sbjct: 9 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDK 66
Query: 199 FGNTALHVATRKKRIEIVNELLA 221
FG TA ++ I+ NE LA
Sbjct: 67 FGKTAFDIS-----IDNGNEDLA 84
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLL 84
L AA+ G D V+ L+ V+ K G PLH+AA +G+ +IV+VLL
Sbjct: 6 LLEAARAGQDDEVRILMANGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLL 55
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 71 AASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRS 130
AA G D V++L+ + ++ + TPL AA +GH++++ VLL +
Sbjct: 9 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDK 66
Query: 131 NGKNALHLAARQGHVDVVKHILKK 154
GK A ++ G+ D+ + IL+K
Sbjct: 67 FGKTAFDISIDNGNEDLAE-ILQK 89
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 60 KSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLS 119
+ N+G PLH A + + Q+LL + TPLI AA ++ L++
Sbjct: 80 QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT 139
Query: 120 KDPHLLKIPRSNGKNALHLAARQGHVDVVK----HILKKDTQLARHTDKKGQTALHMAVK 175
D + S GK ALH AA + + V H +D Q D K +T L +A +
Sbjct: 140 ADADINAADNS-GKTALHWAAAVNNTEAVNILLMHHANRDAQ-----DDKDETPLFLAAR 193
Query: 176 GISSEVVRLLL 186
S E + LL
Sbjct: 194 EGSYEASKALL 204
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 72/166 (43%), Gaps = 21/166 (12%)
Query: 100 TPLITAATKGH---------------VDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGH 144
TPL+ AA +G V+ LL++ L G+ +LHLAAR
Sbjct: 4 TPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFAR 63
Query: 145 VDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL--GADSAIAMLPDKFGNT 202
D K +L A D G+T LH AV + V ++LL A + A + D G T
Sbjct: 64 ADAAKRLLDAGAD-ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHD--GTT 120
Query: 203 ALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSE 248
L +A R IE + E L +D D+N KTAL A + +E
Sbjct: 121 PLILAARLA-IEGMVEDLITADADINAADNSGKTALHWAAAVNNTE 165
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 102 LITAATKGHVDVLHVLLSK--DPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLA 159
L+ ++ +G D++ ++ + DP L P G ALH A GH ++VK +++ +
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSL---PNDEGITALHNAVCAGHTEIVKFLVQFGVNV- 96
Query: 160 RHTDKKGQTALHMAVKGISSEVVRLLLGADSAI 192
D G T LH A + +V + L+ + +A+
Sbjct: 97 NAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLD 85
G TAL A GH ++VK L+Q+ V+ + G PLH AAS + + L++
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVN--VNAADSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 97 SNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDT 156
S +P+ AA G +D L VL+ + +P G +HLA ++GH VV L ++
Sbjct: 73 SGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVS-FLAAES 130
Query: 157 QLARHTDKKGQTALHMAVKGISSEVVRLLLG 187
L R D +G T L +A++ + ++V +L G
Sbjct: 131 DLHRR-DARGLTPLELALQRGAQDLVDILQG 160
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHY 87
G + +A + GH VV L + + + GL PL +A +G QD+V +L H
Sbjct: 107 GALPIHLAVQEGHTAVVSFL---AAESDLHRRDARGLTPLELALQRGAQDLVDILQGHM 162
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 97 SNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDT 156
S +P+ AA G +D L VL+ + +P G +HLA ++GH VV L ++
Sbjct: 67 SGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVS-FLAAES 124
Query: 157 QLARHTDKKGQTALHMAVKGISSEVVRLLLG 187
L R D +G T L +A++ + ++V +L G
Sbjct: 125 DLHRR-DARGLTPLELALQRGAQDLVDILQG 154
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHY 87
G + +A + GH VV L + + + GL PL +A +G QD+V +L H
Sbjct: 101 GALPIHLAVQEGHTAVVSFL---AAESDLHRRDARGLTPLELALQRGAQDLVDILQGHM 156
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 102 LITAATKGHVDVLHVLLSK--DPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLA 159
L+ ++ +G D++ ++ + DP L P G ALH A GH ++VK +++ +
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSL---PNDEGITALHNAVCAGHTEIVKFLVQFGVNV- 96
Query: 160 RHTDKKGQTALHMAVKGISSEVVRLLLGADSAI 192
D G T LH A + +V + L+ + +A+
Sbjct: 97 NAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLD 85
G TAL A GH ++VK L+Q+ V+ + G PLH AAS + + L++
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVN--VNAADSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 95/220 (43%), Gaps = 35/220 (15%)
Query: 30 ETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPE 89
E+ L +AAK + + +LL++ E V + G LHIAA + VL++ PE
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 90 L-----TKTLGQSNATPLITAATKGHVDVLHVLLSKD---------------PHLLKIPR 129
L T L + T L A +V+++ LL++ PH L
Sbjct: 63 LVFEPMTSELYEGQ-TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIY-- 119
Query: 130 SNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAV----KGISSEVVRLL 185
G++ L AA G ++V+ +++ + R D G T LH+ + K + ++ LL
Sbjct: 120 -YGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLL 177
Query: 186 LGADS-----AIAMLPDKFGNTALHVATRKKRIEIVNELL 220
L D ++ ++P+ G T +A + I + L+
Sbjct: 178 LSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 133 KNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAI 192
++ L LAA++ V + +LK + G+TALH+A + E +L+ A +
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 193 AMLPDKF----GNTALHVATRKKRIEIVNELLA 221
P G TALH+A + + +V LLA
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 65 LDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHL 124
+D + +G V++ LD+ +PL A +G V+ +L+ + +
Sbjct: 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 65
Query: 125 LKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRL 184
+ R + LHLAA GH D+V+ +L+ + ++ G LH A +V
Sbjct: 66 NVMNRGD-DTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAED 123
Query: 185 LLGADSAIAMLPDKFG 200
L+ A+ A+ + +K+G
Sbjct: 124 LV-ANGALVSICNKYG 138
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLD-PLHIAASQGYQDIVQVLLDHY 87
G + L A + G VV+ L+ + V N G D PLH+AAS G++DIVQ LL +
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVM---NRGDDTPLHLAASHGHRDIVQKLLQYK 95
Query: 88 PELTKTLGQSNATPLITAATKGHVDVLHVLLS 119
++ N PL A G V L++
Sbjct: 96 ADINAVNEHGN-VPLHYACFWGQDQVAEDLVA 126
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 10/162 (6%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLD--PLHIAASQGYQDIVQVLLDHYPEL 90
L AAK G ++ VK+L T + V+ + G PLH AA +V+ LL H ++
Sbjct: 12 LLEAAKAGDVETVKKL---CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68
Query: 91 TKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKH 150
+ PL A + GH +V LL K ++ + LH AA +G ++ K
Sbjct: 69 HAK-DKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 126
Query: 151 ILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAI 192
+L+ + ++ G T L + VK +++ LL G D+A+
Sbjct: 127 LLQHGADPTK-KNRDGNTPLDL-VKDGDTDIQDLLRG-DAAL 165
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G L A GH +V + L+++ V++ PLH AA++G +I ++LL H
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHGAV--VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132
Query: 89 ELTKTLGQSNATPL 102
+ TK N TPL
Sbjct: 133 DPTKKNRDGN-TPL 145
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 10/162 (6%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLD--PLHIAASQGYQDIVQVLLDHYPEL 90
L AAK G ++ VK+L T + V+ + G PLH AA +V+ LL H ++
Sbjct: 14 LLEAAKAGDVETVKKL---CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 70
Query: 91 TKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKH 150
+ PL A + GH +V LL K ++ + LH AA +G ++ K
Sbjct: 71 -HAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 128
Query: 151 ILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAI 192
+L+ + ++ G T L + VK +++ LL G D+A+
Sbjct: 129 LLQHGADPTK-KNRDGNTPLDL-VKDGDTDIQDLLRG-DAAL 167
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G L A GH +V + L+++ V++ PLH AA++G +I ++LL H
Sbjct: 77 GLVPLHNACSYGHYEVAELLVKHGAV--VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 134
Query: 89 ELTKTLGQSNATPL 102
+ TK N TPL
Sbjct: 135 DPTKKNRDGN-TPL 147
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 65 LDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHL 124
+D + +G V++ LD+ +PL A +G V+ +L+ + +
Sbjct: 1 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 60
Query: 125 LKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRL 184
+ R + LHLAA GH D+V+ +L+ + ++ G LH A +V
Sbjct: 61 NVMNRGD-DTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAED 118
Query: 185 LLGADSAIAMLPDKFG 200
L+ A+ A+ + +K+G
Sbjct: 119 LV-ANGALVSICNKYG 133
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLD-PLHIAASQGYQDIVQVLLDHY 87
G + L A + G VV+ L+ + V N G D PLH+AAS G++DIVQ LL +
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVM---NRGDDTPLHLAASHGHRDIVQKLLQYK 90
Query: 88 PELTKTLGQSNATPLITAATKGHVDVLHVLLS 119
++ N PL A G V L++
Sbjct: 91 ADINAVNEHGN-VPLHYACFWGQDQVAEDLVA 121
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 10/162 (6%)
Query: 33 LFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLD--PLHIAASQGYQDIVQVLLDHYPEL 90
L AAK G ++ VK+L T + V+ + G PLH AA +V+ LL H ++
Sbjct: 16 LLEAAKAGDVETVKKL---CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 72
Query: 91 TKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKH 150
+ PL A + GH +V LL K ++ + LH AA +G ++ K
Sbjct: 73 HAK-DKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 130
Query: 151 ILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAI 192
+L+ + ++ G T L + VK +++ LL G D+A+
Sbjct: 131 LLQHGADPTK-KNRDGNTPLDL-VKDGDTDIQDLLRG-DAAL 169
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP 88
G L A GH +V + L+++ V++ PLH AA++G +I ++LL H
Sbjct: 79 GLVPLHNACSYGHYEVAELLVKHGAV--VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 136
Query: 89 ELTKTLGQSNATPL 102
+ TK N TPL
Sbjct: 137 DPTKKNRDGN-TPL 149
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 165 KGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELL 220
KG+TALH A + + +V+ L+G + D+ G T + +A ++ RIE+V L+
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLI 333
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 132 GKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSA 191
G+ ALH AA+ + +VK+++ + D+ G+T + +A + EVV L+ ++
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 192 IAMLPDKFGNTALHVATRKKRIEIVN 217
+ + D +TA +A IV+
Sbjct: 339 VEAV-DATDHTARQLAQANNHHNIVD 363
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 28/155 (18%)
Query: 29 GETALFIAAKNGHLDVVKELLQ-----YMTKEGVSLKSNSGLD------PLHIAASQGYQ 77
G +AL IA + L VK L++ ++ G + + G PL +AA
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 78 DIVQVLLD--HYP---ELTKTLGQSNATPLITAATKGHVD---VLHVL---------LSK 120
D+V LL+ H P E T +LG + L+ A + V+H+ L
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209
Query: 121 DPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKD 155
L +I G L LAA++G +++ +HIL+++
Sbjct: 210 TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 95 GQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKK 154
GQ NATPLI A + LL ++ + S G+ LH A GH + LK+
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHATILGHTGLACLFLKR 290
Query: 155 DTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
L D +G+ L +A++ ++++V LL
Sbjct: 291 GADLGAR-DSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 95 GQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKK 154
GQ NATPLI A + LL ++ + S G+ LH A GH + LK+
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHATILGHTGLACLFLKR 290
Query: 155 DTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
L D +G+ L +A++ ++++V LL
Sbjct: 291 GADLGAR-DSEGRDPLTIAMETANADIVTLL 320
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 95 GQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKK 154
GQ NATPLI A + LL ++ + S G+ LH A GH + LK+
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHATILGHTGLACLFLKR 290
Query: 155 DTQLARHTDKKGQTALHMAVKGISSEVVRLL 185
L D +G+ L +A++ ++++V LL
Sbjct: 291 GADLGAR-DSEGRDPLTIAMETANADIVTLL 320
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 28/155 (18%)
Query: 29 GETALFIAAKNGHLDVVKELLQ-----YMTKEGVSLKSNSGLD------PLHIAASQGYQ 77
G +AL IA + L VK L++ ++ G + + G PL +AA
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 162
Query: 78 DIVQVLLD--HYP---ELTKTLGQSNATPLITAATKGHVD---VLHVL---------LSK 120
D+V LL+ H P E T +LG + L+ A + V+H+ L
Sbjct: 163 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 222
Query: 121 DPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKD 155
L +I G L LAA++G +++ +HIL+++
Sbjct: 223 TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 257
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 97 SNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDT 156
S +P+ AA G +D L VL+ + + S G +HLA R+GH VV L ++
Sbjct: 75 SGTSPVHDAARTGFLDTLKVLVEHGADVNAL-DSTGSLPIHLAIREGHSSVVS-FLAPES 132
Query: 157 QLARHTDKKGQTALHMAVKGISSEVVRLLLG 187
L H D G T L +A + + ++ +L G
Sbjct: 133 DL-HHRDASGLTPLELARQRGAQNLMDILQG 162
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVS--LKSNSGLDPLHIAASQGYQDIVQVLLD 85
G+TAL + G V ELL K+G S ++ SG P+H AA G+ D ++VL++
Sbjct: 43 FGKTALQVM-MFGSPAVALELL----KQGASPNVQDASGTSPVHDAARTGFLDTLKVLVE 97
Query: 86 HYPELTKTLGQSNATPLITAATKGHVDVLHVL 117
H ++ L + + P+ A +GH V+ L
Sbjct: 98 HGADV-NALDSTGSLPIHLAIREGHSSVVSFL 128
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEG-VSLKSNSGLDPLHIAASQGYQDIVQVLLDHY 87
G + +A + GH VV ++ E + + SGL PL +A +G Q+++ +L H
Sbjct: 109 GSLPIHLAIREGHSSVVS----FLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGHM 164
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 97 SNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDT 156
S +P+ AA G +D L VL+ + + S G +HLA R+GH VV L ++
Sbjct: 73 SGTSPVHDAARTGFLDTLKVLVEHGADVNAL-DSTGSLPIHLAIREGHSSVVS-FLAPES 130
Query: 157 QLARHTDKKGQTALHMAVKGISSEVVRLLLG 187
L H D G T L +A + + ++ +L G
Sbjct: 131 DL-HHRDASGLTPLELARQRGAQNLMDILQG 160
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVS--LKSNSGLDPLHIAASQGYQDIVQVLLD 85
G+TAL + G V ELL K+G S ++ SG P+H AA G+ D ++VL++
Sbjct: 41 FGKTALQVM-MFGSPAVALELL----KQGASPNVQDASGTSPVHDAARTGFLDTLKVLVE 95
Query: 86 HYPELTKTLGQSNATPLITAATKGHVDVLHVL 117
H ++ L + + P+ A +GH V+ L
Sbjct: 96 HGADV-NALDSTGSLPIHLAIREGHSSVVSFL 126
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEG-VSLKSNSGLDPLHIAASQGYQDIVQVLLDHY 87
G + +A + GH VV ++ E + + SGL PL +A +G Q+++ +L H
Sbjct: 107 GSLPIHLAIREGHSSVVS----FLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGHM 162
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 30 ETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPE 89
+ L AA G ++ V++LL+ + G P+ + G + ++LL H E
Sbjct: 13 DAGLATAAARGQVETVRQLLEAGADPNAL--NRFGRRPIQVMM-MGSAQVAELLLLHGAE 69
Query: 90 LTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVK 149
+ P+ AA +G +D L V+L + L + + G+ + LA QGH D+ +
Sbjct: 70 PNCADPATLTRPVHDAAREGFLDTL-VVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128
Query: 150 HI 151
++
Sbjct: 129 YL 130
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 32 ALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYP-EL 90
A +AA+NGHL V+ L + E + +AA G+ ++ L + P E
Sbjct: 131 AFRLAAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 190
Query: 91 TKTLGQSNATPLITAAT-KGHVDVLHVLL 118
T + N AA +GH +V++ LL
Sbjct: 191 TAXIQAENYYAFRWAAVGRGHHNVINFLL 219
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 18/144 (12%)
Query: 80 VQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLA 139
V+ L D+ P L S P H D+LHV + D + R G N
Sbjct: 8 VRALFDYDPNRDDGL-PSRGLPF------KHGDILHVTNASDDEWWQARRVLGDNE---D 57
Query: 140 ARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVR--LLLGA------DSA 191
+ G V + +K R + + AV+ +S R ++LG D
Sbjct: 58 EQIGIVPSKRRWERKMRARDRSVKSEENVLSYEAVQRLSINYTRPVIILGPLKDRINDDL 117
Query: 192 IAMLPDKFGNTALHVATRKKRIEI 215
I+ PDKFG+ H K+ E+
Sbjct: 118 ISEYPDKFGSCVPHTTRPKREYEV 141
>pdb|4IFD|I Chain I, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 301
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 247 SEETAELKECLERNGAVRARELNQ-----PRDELRRTVKEIKQHVHTQLEQTRKTNKNV- 300
EE + + ER G ++ E + P D RRTVK I V E+ RKTNK
Sbjct: 75 CEEEKKTDQEEEREGTDQSTEEEKSVDASPNDVTRRTVKNILVSVLPGTEKGRKTNKYAN 134
Query: 301 QDIAKHLRK 309
D A +L K
Sbjct: 135 NDFANNLPK 143
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 130 SNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGAD 189
++G ALH AA D +K +L K L ++ G+TAL +A K E LL A
Sbjct: 205 ADGNTALHYAALYNQPDCLK-LLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ 263
Query: 190 SAIAMLP 196
+ P
Sbjct: 264 AGTFAFP 270
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 159 ARHTDK--KGQTALHMAVKGISSEVVRLLL--GADSAIAMLPD-----------KFGNTA 203
A +TD KGQTALH+A++ + +V LL+ GAD A D FG
Sbjct: 92 ASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELP 151
Query: 204 LHVATRKKRIEIVNELLALSDIDVNILTKD 233
L +A ++ IV LL S +I +D
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARD 181
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 130 SNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGAD 189
++G ALH AA D +K +L K L ++ G+TAL +A K E LL A
Sbjct: 224 ADGNTALHYAALYNQPDCLK-LLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ 282
Query: 190 SAIAMLP 196
+ P
Sbjct: 283 AGTFAFP 289
>pdb|3Q7K|A Chain A, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|B Chain B, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|C Chain C, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|D Chain D, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|E Chain E, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|G Chain G, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|H Chain H, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|I Chain I, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|J Chain J, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|K Chain K, Formate Channel Foca From Salmonella Typhimurium
Length = 293
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 357 PFKIFYVANAFALFFSLAVVLVQITIVRGELKSERRVTKVINKLMW-----LASICTSVA 411
P K FY+A +F S+A V IT G + K+I + + L IC +
Sbjct: 31 PLKTFYLAITAGVFISIAFVF-YITATTGTGAMPYGMAKLIGGICFSLGLILCVICGADL 89
Query: 412 FTSSSYIVVGR 422
FTS+ IVV +
Sbjct: 90 FTSTVLIVVAK 100
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAA 72
G+T L IAA+ G++ +V LL Y ++ K SGL P+ A
Sbjct: 283 GDTCLNIAARLGNISIVDALLDYGADPFIANK--SGLRPVDFGA 324
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 122 PHLLKIPRSNGKNA--LHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISS 179
P L +I +S+ +N +H+AAR+G D V+ +++ ++ G TALH+A K
Sbjct: 9 PKLNRI-KSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQ-NRFGCTALHLACKFGCV 66
Query: 180 EVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIV 216
+ + L ++ G +H+A + ++V
Sbjct: 67 DTAKYLASVGEVHSLW---HGQKPIHLAVXANKTDLV 100
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 58 SLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVL 117
+++N PL +AA +G + +VLLDH+ T + P A + H D++ +L
Sbjct: 75 DMQNNKEETPLFLAAREGSYETAKVLLDHFANRDIT-DHMDRLPRDIAQERMHHDIVRLL 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,779,836
Number of Sequences: 62578
Number of extensions: 425598
Number of successful extensions: 2164
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1194
Number of HSP's gapped (non-prelim): 400
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)