Query 011376
Match_columns 487
No_of_seqs 500 out of 2950
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 06:51:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wdy_A 2-5A-dependent ribonucl 100.0 2E-39 6.8E-44 309.9 26.0 252 3-265 13-280 (285)
2 1yyh_A HN1;, notch 1, ankyrin 100.0 5.6E-40 1.9E-44 309.4 20.8 231 21-261 2-246 (253)
3 3d9h_A CDNA FLJ77766, highly s 100.0 2.2E-39 7.5E-44 310.8 24.3 246 2-262 22-278 (285)
4 1k1a_A B-cell lymphoma 3-encod 100.0 1.5E-39 5.1E-44 303.5 22.5 232 22-261 2-239 (241)
5 3b7b_A Euchromatic histone-lys 100.0 4E-39 1.4E-43 300.0 24.7 231 21-257 3-233 (237)
6 2dzn_A Probable 26S proteasome 100.0 1.6E-38 5.4E-43 294.1 25.8 214 29-245 2-219 (228)
7 2xai_A ASB-9, ankyrin repeat a 100.0 2.2E-38 7.5E-43 299.9 26.4 220 28-262 2-221 (261)
8 1oy3_D Transcription factor in 100.0 8E-39 2.7E-43 305.7 21.7 220 22-245 2-269 (282)
9 1n11_A Ankyrin; clathrin, BAND 100.0 1.4E-38 4.6E-43 324.1 24.8 264 5-279 90-385 (437)
10 3aji_A 26S proteasome non-ATPa 100.0 2.3E-38 8E-43 293.7 24.0 227 26-262 3-229 (231)
11 1n11_A Ankyrin; clathrin, BAND 100.0 3.7E-38 1.3E-42 320.8 26.3 270 3-284 22-291 (437)
12 3ljn_A Hypothetical protein; a 100.0 7.4E-39 2.5E-43 318.1 20.6 237 18-266 9-272 (364)
13 3utm_A Tankyrase-1; tankyrase, 100.0 1.8E-38 6E-43 312.8 23.0 267 5-282 34-324 (351)
14 2fo1_E LIN-12 protein; beta-ba 100.0 1.4E-38 4.7E-43 317.2 18.9 237 20-263 115-371 (373)
15 4g8k_A 2-5A-dependent ribonucl 100.0 1.1E-37 3.8E-42 306.3 24.8 247 3-264 33-327 (337)
16 3utm_A Tankyrase-1; tankyrase, 100.0 7.5E-38 2.6E-42 308.3 23.0 268 16-293 11-302 (351)
17 1wdy_A 2-5A-dependent ribonucl 100.0 2.5E-37 8.5E-42 295.3 25.5 254 27-290 3-272 (285)
18 3eu9_A Huntingtin-interacting 100.0 3.2E-37 1.1E-41 287.0 21.6 233 23-264 3-236 (240)
19 4b93_B Ankyrin repeat domain-c 100.0 5.6E-38 1.9E-42 298.1 15.7 217 24-245 6-229 (269)
20 2xai_A ASB-9, ankyrin repeat a 100.0 2.1E-37 7.3E-42 293.1 16.8 234 3-247 11-251 (261)
21 3d9h_A CDNA FLJ77766, highly s 100.0 3E-36 1E-40 289.0 22.5 244 25-279 11-263 (285)
22 4g8k_A 2-5A-dependent ribonucl 100.0 7E-36 2.4E-40 293.4 25.2 232 26-265 22-300 (337)
23 3kea_A K1L; tropism, ANK repea 100.0 1.8E-36 6.3E-41 290.5 20.2 240 5-267 9-250 (285)
24 1s70_B 130 kDa myosin-binding 100.0 1.5E-36 5.2E-41 292.8 17.3 214 26-245 37-276 (299)
25 3aji_A 26S proteasome non-ATPa 100.0 6.4E-36 2.2E-40 277.2 19.3 217 3-226 14-230 (231)
26 2fo1_E LIN-12 protein; beta-ba 100.0 7.3E-37 2.5E-41 304.7 13.9 259 22-292 87-367 (373)
27 3ljn_A Hypothetical protein; a 100.0 3.7E-36 1.3E-40 298.6 18.2 247 3-262 28-313 (364)
28 2f8y_A Notch homolog 1, transl 100.0 1.1E-35 3.7E-40 274.1 18.7 214 40-263 2-216 (223)
29 1yyh_A HN1;, notch 1, ankyrin 100.0 6.2E-36 2.1E-40 281.7 17.4 232 56-294 2-246 (253)
30 1oy3_D Transcription factor in 100.0 2.4E-35 8.2E-40 281.5 20.7 217 57-279 2-266 (282)
31 2f8y_A Notch homolog 1, transl 100.0 2E-35 7E-40 272.3 18.9 216 6-227 2-217 (223)
32 1ikn_D Protein (I-kappa-B-alph 100.0 3.3E-36 1.1E-40 280.4 12.6 219 23-245 2-230 (236)
33 2rfa_A Transient receptor pote 100.0 1.4E-34 4.8E-39 268.4 21.8 197 28-228 2-224 (232)
34 3b7b_A Euchromatic histone-lys 100.0 1.4E-33 4.8E-38 262.5 24.5 216 56-279 3-218 (237)
35 1k1a_A B-cell lymphoma 3-encod 100.0 6.5E-34 2.2E-38 265.2 21.2 221 58-286 3-231 (241)
36 2dzn_A Probable 26S proteasome 100.0 2.3E-33 7.7E-38 259.4 22.4 209 64-279 2-216 (228)
37 4b93_B Ankyrin repeat domain-c 100.0 2.2E-34 7.5E-39 273.3 13.7 204 3-212 19-230 (269)
38 3kea_A K1L; tropism, ANK repea 100.0 6.7E-34 2.3E-38 272.6 17.1 216 37-267 7-224 (285)
39 2pnn_A Transient receptor pote 100.0 2.2E-34 7.5E-39 274.1 12.9 217 19-238 3-271 (273)
40 1s70_B 130 kDa myosin-binding 100.0 8.8E-34 3E-38 273.4 16.3 244 35-286 4-280 (299)
41 3hra_A Ankyrin repeat family p 100.0 1.2E-32 4.1E-37 249.5 22.5 193 26-221 2-199 (201)
42 3hra_A Ankyrin repeat family p 100.0 1.9E-32 6.4E-37 248.2 21.8 195 61-261 2-201 (201)
43 1ikn_D Protein (I-kappa-B-alph 100.0 1.7E-33 5.7E-38 262.1 14.2 204 58-268 2-214 (236)
44 2rfa_A Transient receptor pote 100.0 1.7E-32 6E-37 254.3 20.3 196 63-266 2-225 (232)
45 1sw6_A Regulatory protein SWI6 100.0 1.6E-33 5.5E-38 275.4 12.6 226 5-245 57-327 (327)
46 3eu9_A Huntingtin-interacting 100.0 1.6E-32 5.6E-37 255.1 18.7 217 3-227 17-236 (240)
47 2etb_A Transient receptor pote 100.0 3.8E-33 1.3E-37 262.9 14.1 190 28-221 1-242 (256)
48 2etb_A Transient receptor pote 100.0 2.5E-32 8.5E-37 257.3 14.8 200 63-268 1-251 (256)
49 4gpm_A Engineered protein OR26 100.0 6.9E-31 2.4E-35 230.9 19.6 157 31-192 6-162 (169)
50 2pnn_A Transient receptor pote 100.0 5.1E-32 1.8E-36 257.7 12.7 203 55-263 4-258 (273)
51 4gpm_A Engineered protein OR26 100.0 1.4E-30 4.7E-35 229.0 19.2 159 66-229 6-164 (169)
52 3jxi_A Vanilloid receptor-rela 100.0 8.7E-32 3E-36 254.1 11.8 194 26-221 2-246 (260)
53 4hbd_A KN motif and ankyrin re 100.0 5.5E-31 1.9E-35 251.1 15.5 192 29-222 76-272 (276)
54 1sw6_A Regulatory protein SWI6 100.0 4.8E-32 1.7E-36 264.9 6.4 248 9-278 33-323 (327)
55 3jxi_A Vanilloid receptor-rela 100.0 6.6E-31 2.3E-35 248.1 11.9 201 61-267 2-254 (260)
56 2rfm_A Putative ankyrin repeat 100.0 1.1E-29 3.8E-34 228.4 18.3 170 14-188 20-189 (192)
57 3v30_A DNA-binding protein rfx 100.0 3.6E-29 1.2E-33 220.8 16.9 168 66-237 4-171 (172)
58 4hbd_A KN motif and ankyrin re 100.0 3.3E-29 1.1E-33 238.8 17.0 192 64-261 76-273 (276)
59 3v31_A Ankyrin repeat family A 100.0 1.1E-28 3.8E-33 216.6 17.2 159 28-191 2-160 (167)
60 3v30_A DNA-binding protein rfx 100.0 1.3E-28 4.3E-33 217.3 17.4 170 29-203 2-171 (172)
61 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.2E-28 4E-33 215.2 15.9 157 28-189 4-160 (162)
62 1ihb_A P18-INK4C(INK6), cyclin 100.0 1E-28 3.5E-33 215.5 15.4 159 63-226 4-162 (162)
63 2y1l_E Darpin-8.4; hydrolase-i 100.0 4.8E-28 1.6E-32 213.1 18.3 158 26-188 11-168 (169)
64 2rfm_A Putative ankyrin repeat 100.0 2.6E-28 8.8E-33 219.5 16.2 162 56-221 27-188 (192)
65 3v31_A Ankyrin repeat family A 100.0 1.1E-27 3.7E-32 210.2 17.1 155 63-221 2-156 (167)
66 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.1E-27 3.7E-32 207.7 16.5 154 29-188 2-155 (156)
67 3twr_A Tankyrase-2; ankyrin re 100.0 3.9E-28 1.3E-32 212.6 13.7 160 25-189 4-163 (165)
68 1awc_B Protein (GA binding pro 100.0 1.9E-27 6.5E-32 205.6 17.5 150 30-185 3-152 (153)
69 2vge_A RELA-associated inhibit 100.0 1.2E-30 4.2E-35 241.5 -3.4 176 63-245 20-199 (229)
70 3f6q_A Integrin-linked protein 100.0 1.6E-27 5.6E-32 211.7 16.5 166 64-233 5-170 (179)
71 2y1l_E Darpin-8.4; hydrolase-i 100.0 3.5E-27 1.2E-31 207.6 18.0 157 61-221 11-167 (169)
72 3f6q_A Integrin-linked protein 99.9 2.2E-27 7.7E-32 210.8 15.1 164 27-194 3-166 (179)
73 1awc_B Protein (GA binding pro 99.9 5.8E-27 2E-31 202.5 17.3 151 64-219 2-152 (153)
74 3twr_A Tankyrase-2; ankyrin re 99.9 3E-27 1E-31 207.0 15.4 160 95-262 5-164 (165)
75 2vge_A RELA-associated inhibit 99.9 5.5E-29 1.9E-33 230.4 4.1 201 13-221 3-209 (229)
76 1bd8_A P19INK4D CDK4/6 inhibit 99.9 9.6E-27 3.3E-31 201.7 16.0 153 64-221 2-154 (156)
77 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.1E-28 3.6E-33 230.1 3.3 211 26-245 2-229 (239)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2E-27 6.9E-32 221.5 9.2 179 61-245 2-192 (239)
79 2aja_A Ankyrin repeat family p 99.9 1.8E-28 6.2E-33 242.6 1.2 227 23-268 86-349 (376)
80 2aja_A Ankyrin repeat family p 99.9 4.1E-27 1.4E-31 232.8 -0.6 193 30-246 66-266 (376)
81 1d9s_A Cyclin-dependent kinase 99.9 2.1E-25 7.2E-30 188.7 9.6 133 20-157 3-136 (136)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 5.4E-25 1.8E-29 190.8 11.3 146 22-173 5-151 (156)
83 1d9s_A Cyclin-dependent kinase 99.9 1.4E-24 4.7E-29 183.7 10.7 132 54-189 2-134 (136)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 1.8E-24 6E-29 187.6 10.3 142 95-241 9-151 (156)
85 3t8k_A Uncharacterized protein 99.9 1.2E-24 4.1E-29 194.2 8.8 152 29-187 6-175 (186)
86 3t8k_A Uncharacterized protein 99.9 9.4E-25 3.2E-29 194.9 7.4 154 64-221 6-175 (186)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 3.6E-23 1.2E-27 171.8 15.7 126 28-157 1-126 (126)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 2.1E-23 7.1E-28 176.4 13.2 126 26-155 11-136 (136)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.4E-22 4.9E-27 168.1 15.2 124 63-189 1-124 (126)
90 3deo_A Signal recognition part 99.9 1.5E-23 5E-28 186.9 9.7 141 25-187 40-180 (183)
91 2jab_A H10-2-G3; HER2, darpin, 99.9 7.6E-23 2.6E-27 172.9 13.0 125 61-188 11-135 (136)
92 3ui2_A Signal recognition part 99.9 2E-23 6.7E-28 195.0 10.0 137 63-221 44-181 (244)
93 3c5r_A BARD-1, BRCA1-associate 99.9 2.9E-23 9.9E-28 175.7 7.1 127 24-154 5-131 (137)
94 3c5r_A BARD-1, BRCA1-associate 99.9 6E-23 2E-27 173.7 8.0 126 59-187 5-130 (137)
95 3deo_A Signal recognition part 99.9 1.4E-22 4.8E-27 180.5 10.4 139 61-221 41-180 (183)
96 3ui2_A Signal recognition part 99.9 2.2E-22 7.7E-27 187.8 11.4 142 25-188 41-182 (244)
97 2b0o_E UPLC1; arfgap, structur 99.9 6.1E-22 2.1E-26 190.6 11.9 145 60-213 147-299 (301)
98 3ehr_A Osteoclast-stimulating 99.9 2.9E-22 1E-26 184.1 9.2 134 21-158 65-199 (222)
99 2b0o_E UPLC1; arfgap, structur 99.9 7.5E-22 2.6E-26 189.9 12.4 141 97-246 150-298 (301)
100 3aaa_C Myotrophin, protein V-1 99.9 5.9E-22 2E-26 164.3 9.7 112 26-141 4-115 (123)
101 3aaa_C Myotrophin, protein V-1 99.8 1.7E-21 5.9E-26 161.4 9.3 110 62-174 5-114 (123)
102 3ehr_A Osteoclast-stimulating 99.8 3E-21 1E-25 177.3 8.4 128 131-264 72-199 (222)
103 1dcq_A PYK2-associated protein 99.8 4.1E-20 1.4E-24 175.7 14.1 120 100-221 132-259 (278)
104 1dcq_A PYK2-associated protein 99.8 7.1E-20 2.4E-24 174.1 14.2 194 60-263 62-263 (278)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.4E-19 4.8E-24 142.0 11.5 92 28-122 1-92 (93)
106 3jue_A Arfgap with coiled-coil 99.8 1.1E-19 3.7E-24 179.0 13.0 144 63-209 198-346 (368)
107 3lvq_E ARF-GAP with SH3 domain 99.8 1.5E-19 5E-24 186.4 14.5 124 31-158 134-266 (497)
108 3jue_A Arfgap with coiled-coil 99.8 1.2E-19 4.1E-24 178.7 12.1 148 95-245 196-348 (368)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.8 4.1E-19 1.4E-23 139.2 11.7 92 63-156 1-92 (93)
110 3lvq_E ARF-GAP with SH3 domain 99.8 5E-19 1.7E-23 182.4 14.9 128 99-230 133-269 (497)
111 2l6b_A NR1C; ankyrin, consensu 99.8 3.5E-19 1.2E-23 145.5 8.7 107 25-135 5-111 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 8E-19 2.7E-23 143.3 9.8 109 127-238 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 3.9E-17 1.3E-21 132.2 9.6 95 20-117 15-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 4.6E-16 1.6E-20 125.8 9.6 92 58-151 18-109 (110)
115 3mkq_B Coatomer subunit alpha; 56.2 48 0.0017 27.9 8.1 129 30-187 9-139 (177)
116 2knc_B Integrin beta-3; transm 50.3 41 0.0014 24.1 5.8 27 425-451 9-35 (79)
117 2l8s_A Integrin alpha-1; trans 48.9 23 0.00079 23.2 3.8 26 423-448 6-31 (54)
118 2knc_A Integrin alpha-IIB; tra 46.4 27 0.00092 23.0 3.8 26 423-448 9-34 (54)
119 3gvo_A Pumilio 2, pumilio homo 43.3 11 0.00039 35.7 2.6 193 27-221 35-238 (351)
120 2k1a_A Integrin alpha-IIB; sin 41.1 41 0.0014 20.8 3.9 25 424-448 8-32 (42)
121 4ev6_A Magnesium transport pro 39.3 79 0.0027 29.6 7.8 24 315-338 275-298 (339)
122 2l2t_A Receptor tyrosine-prote 36.5 14 0.00049 23.1 1.3 29 424-452 7-35 (44)
123 3k49_A MRNA-binding protein PU 33.0 48 0.0017 31.5 5.2 184 26-211 39-233 (369)
124 3gvo_A Pumilio 2, pumilio homo 31.7 20 0.00067 34.0 2.1 233 23-257 67-319 (351)
125 4ev6_A Magnesium transport pro 31.0 54 0.0018 30.7 5.1 23 397-419 279-301 (339)
126 2ks1_B Epidermal growth factor 30.6 9.6 0.00033 23.9 -0.2 28 425-452 9-36 (44)
127 2iub_A CORA, divalent cation t 29.0 1E+02 0.0035 29.1 6.8 25 314-338 298-322 (363)
128 2k9j_B Integrin beta-3; transm 28.9 1.1E+02 0.0036 19.0 4.8 27 425-451 8-34 (43)
129 4dve_A Biotin transporter BIOY 27.7 2.6E+02 0.0087 23.9 8.2 22 322-343 23-44 (198)
130 1gp8_A Protein (scaffolding pr 21.2 66 0.0022 19.3 2.2 18 33-50 17-34 (40)
No 1
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2e-39 Score=309.90 Aligned_cols=252 Identities=28% Similarity=0.366 Sum_probs=230.0
Q ss_pred CCCCchhhHHHHHHHhHHHHHhc-cCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHH
Q 011376 3 GTTSSVDFDAEVVEIRAAVVEEV-NELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQ 81 (487)
Q Consensus 3 a~~~~~e~~~~ll~~~~~~~~~~-~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~ 81 (487)
+..++.+.++.+++. +.+++.. +..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.++++
T Consensus 13 ~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 89 (285)
T 1wdy_A 13 VQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFLLAAIAGSVKLLK 89 (285)
T ss_dssp HHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHc-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence 456889999999984 5677766 78899999999999999999999995 7888899999999999999999999999
Q ss_pred HHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccC----------CCCCCcHHHHHHHcCCHHHHHHH
Q 011376 82 VLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIP----------RSNGKNALHLAARQGHVDVVKHI 151 (487)
Q Consensus 82 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~----------~~~g~tpLh~A~~~g~~~~v~~L 151 (487)
+|+++|++++.. |..|.||||+|+..|+.+++++|++.++++ +.. +..|.||||.|+..|+.+++++|
T Consensus 90 ~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 167 (285)
T 1wdy_A 90 LFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167 (285)
T ss_dssp HHHHTTCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHcCCCCCcc-CcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHH
Confidence 999999998655 899999999999999999999999999887 333 67899999999999999999999
Q ss_pred hhc-CCccccccCCCCChHHHHHHhCCC----HHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcC
Q 011376 152 LKK-DTQLARHTDKKGQTALHMAVKGIS----SEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDID 226 (487)
Q Consensus 152 l~~-~~~~~~~~d~~g~t~Lh~A~~~~~----~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d 226 (487)
++. +.++ +..|..|.||||+|+..++ .+++++|++.+.+ .+.+|..|+||||+|+..|+.+++++|++..|++
T Consensus 168 l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~ 245 (285)
T 1wdy_A 168 LDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245 (285)
T ss_dssp HHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC
T ss_pred HHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC
Confidence 998 7776 8889999999999999999 9999999998644 5677999999999999999999999999988999
Q ss_pred ccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcCcHhH
Q 011376 227 VNILTKDRKTALDIAEGLPFSEETAELKECLERNGAVRA 265 (487)
Q Consensus 227 ~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~~~~ 265 (487)
++.+|..|+||||+|+..+ +.+++++|+++|++..
T Consensus 246 ~~~~~~~g~t~l~~A~~~~----~~~i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 246 INDTDSDGKTALLLAVELK----LKKIAELLCKRGASTD 280 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTT----CHHHHHHHHHHSSCSC
T ss_pred ccccCCCCCcHHHHHHHcC----cHHHHHHHHHcCCCCC
Confidence 9999999999999999999 8899999999998643
No 2
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=5.6e-40 Score=309.38 Aligned_cols=231 Identities=21% Similarity=0.264 Sum_probs=181.0
Q ss_pred HHHhccCCCCcHHHHHHHcC-------------CHHHHHHHHHhccccccc-cCCCCCCcHHHHHHHcCcHHHHHHHHhh
Q 011376 21 VVEEVNELGETALFIAAKNG-------------HLDVVKELLQYMTKEGVS-LKSNSGLDPLHIAASQGYQDIVQVLLDH 86 (487)
Q Consensus 21 ~~~~~~~~g~T~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~-~~~~~g~tpLh~A~~~g~~~iv~~Ll~~ 86 (487)
++|.+|.+|.||||+|+..| +.+++++|++. +.+++ ..|..|.||||+|+..|+.+++++|+++
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 79 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEA 79 (253)
T ss_dssp ----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc--cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 57889999999999999987 89999999996 55554 4588999999999999999999999999
Q ss_pred CCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCC
Q 011376 87 YPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKG 166 (487)
Q Consensus 87 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g 166 (487)
|++++.. |..|.||||+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++++.++ +..|..|
T Consensus 80 g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g 157 (253)
T 1yyh_A 80 SADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLG 157 (253)
T ss_dssp TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTS
T ss_pred CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCC
Confidence 9998655 8999999999999999999999999998555888999999999999999999999999999998 7889999
Q ss_pred ChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCC
Q 011376 167 QTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPF 246 (487)
Q Consensus 167 ~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~ 246 (487)
.||||+|+..|+.+++++|++.+.+ .+.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|+..+
T Consensus 158 ~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g- 234 (253)
T 1yyh_A 158 KSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERM- 234 (253)
T ss_dssp CBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTT-
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccCCCCHHHHHHHcC-
Confidence 9999999999999999999998654 56779999999999999999999999999 89999999999999999999999
Q ss_pred ChhhHHHHHHHHhcC
Q 011376 247 SEETAELKECLERNG 261 (487)
Q Consensus 247 ~~~~~~i~~~L~~~g 261 (487)
+.+++++|....
T Consensus 235 ---~~~i~~~l~~~~ 246 (253)
T 1yyh_A 235 ---HHDIVRLLDLEH 246 (253)
T ss_dssp ---CHHHHHHHHC--
T ss_pred ---CHHHHHHHHHHh
Confidence 889998887654
No 3
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.2e-39 Score=310.84 Aligned_cols=246 Identities=21% Similarity=0.261 Sum_probs=207.4
Q ss_pred CCCCCchhhHHHHHHHh----------HHHHHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHH
Q 011376 2 MGTTSSVDFDAEVVEIR----------AAVVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIA 71 (487)
Q Consensus 2 ~a~~~~~e~~~~ll~~~----------~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A 71 (487)
++..|+.+.+.+++... ...++..|.+|.||||+|+..|+.++|++|++. +.+++.+|.+|+||||+|
T Consensus 22 Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 99 (285)
T 3d9h_A 22 ASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNIITADHVSPLHEA 99 (285)
T ss_dssp --------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT--TCCSCEECTTCCCHHHHH
T ss_pred HhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHH
Confidence 55667777777765543 234577889999999999999999999999995 788999999999999999
Q ss_pred HHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q 011376 72 ASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHI 151 (487)
Q Consensus 72 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~L 151 (487)
+..|+.+++++|+++|++++.. |..|.||||+|+..|+.+++++|++.++++ + .+.+|.||||+|+..|+.+++++|
T Consensus 100 ~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~L 176 (285)
T 3d9h_A 100 CLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSL 176 (285)
T ss_dssp HHTTCHHHHHHHHHTTCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHHHH
T ss_pred HHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9999999999999999998655 899999999999999999999999999887 3 245699999999999999999999
Q ss_pred hhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccc
Q 011376 152 LKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILT 231 (487)
Q Consensus 152 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n 231 (487)
++++.++ +..|..|.||||+|+..|+.+++++|++.+.+.. .|..|+||||+|+..++.+++++|++ .|+|++.+|
T Consensus 177 l~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d 252 (285)
T 3d9h_A 177 IAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVVRTASEELACLLMD-FGADTQAKN 252 (285)
T ss_dssp HHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC
T ss_pred HHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcC
Confidence 9999998 7889999999999999999999999999976654 48899999999999999999999999 799999999
Q ss_pred cCCCCHHhHHhhCCCChhhHHHHHHHHhc-Cc
Q 011376 232 KDRKTALDIAEGLPFSEETAELKECLERN-GA 262 (487)
Q Consensus 232 ~~G~t~L~~A~~~~~~~~~~~i~~~L~~~-g~ 262 (487)
.+|+||||+|+.. .+++++|++. ++
T Consensus 253 ~~g~t~l~~A~~~------~~~~~~Ll~~~~a 278 (285)
T 3d9h_A 253 AEGKRPVELVPPE------SPLAQLFLEREGA 278 (285)
T ss_dssp TTSCCGGGGSCTT------SHHHHHHHHHC--
T ss_pred CCCCCHHHHhcCc------cHHHHHHHHhhcc
Confidence 9999999999843 3677777776 44
No 4
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.5e-39 Score=303.49 Aligned_cols=232 Identities=23% Similarity=0.288 Sum_probs=203.8
Q ss_pred HHhccCCCCcHHHHHHHcCCHHHHHHHHHh--ccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCC
Q 011376 22 VEEVNELGETALFIAAKNGHLDVVKELLQY--MTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNA 99 (487)
Q Consensus 22 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~--~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~ 99 (487)
++.+|.+|.||||+|+..|+.+++++|++. ..+.+++..|..|.||||+|+..|+.+++++|+++|+++... |..|.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~ 80 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL-DRHGQ 80 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSC
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCC
Confidence 577899999999999999999999999973 136788999999999999999999999999999999988655 88999
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCC---CcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccC-CCCChHHHHHHh
Q 011376 100 TPLITAATKGHVDVLHVLLSKDPH---LLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTD-KKGQTALHMAVK 175 (487)
Q Consensus 100 tpL~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~ 175 (487)
||||+|+..|+.+++++|++.++. ..+..+..|.||||+|+..|+.+++++|+++++++ +..+ ..|.||||+|+.
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHH
Confidence 999999999999999999999872 23677889999999999999999999999999998 5555 889999999999
Q ss_pred CCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHH
Q 011376 176 GISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKE 255 (487)
Q Consensus 176 ~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~ 255 (487)
.|+.+++++|++.+.+ .+.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|+..+ ..++++
T Consensus 160 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~----~~~i~~ 233 (241)
T 1k1a_A 160 NNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRR----VIDILR 233 (241)
T ss_dssp TTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHH----HHHHHT
T ss_pred cCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhcC----cHHHHh
Confidence 9999999999998544 56779999999999999999999999999 89999999999999999999887 788887
Q ss_pred HHHhcC
Q 011376 256 CLERNG 261 (487)
Q Consensus 256 ~L~~~g 261 (487)
.|.+.+
T Consensus 234 ~l~~~~ 239 (241)
T 1k1a_A 234 GKATRP 239 (241)
T ss_dssp C-----
T ss_pred hhccCC
Confidence 776654
No 5
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=4e-39 Score=300.02 Aligned_cols=231 Identities=25% Similarity=0.312 Sum_probs=208.8
Q ss_pred HHHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCc
Q 011376 21 VVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNAT 100 (487)
Q Consensus 21 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t 100 (487)
+++..|.+|.||||.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|+++... +..|.|
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t 79 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK-DAEGST 79 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCC-CTTSCC
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHc--CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC-CCCCCc
Confidence 3467889999999999999999999999995 7888999999999999999999999999999999987654 889999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHH
Q 011376 101 PLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSE 180 (487)
Q Consensus 101 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e 180 (487)
|||+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~ 158 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVD 158 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHH
Confidence 9999999999999999999985555888899999999999999999999999999998 788999999999999999999
Q ss_pred HHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHH
Q 011376 181 VVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECL 257 (487)
Q Consensus 181 ~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L 257 (487)
++++|++.+.+ .+.+|..|+||||+|+..++.+++++|++ .|++++.+|.+|+||+|+|+..+......++.+.+
T Consensus 159 ~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 159 IAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233 (237)
T ss_dssp HHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHH-cCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998654 56679999999999999999999999999 79999999999999999999988333233333333
No 6
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.6e-38 Score=294.10 Aligned_cols=214 Identities=24% Similarity=0.277 Sum_probs=196.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhC--CcccccCCCCCCcHHHHHH
Q 011376 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHY--PELTKTLGQSNATPLITAA 106 (487)
Q Consensus 29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A~ 106 (487)
|+||||.|+..|+.++|++|++.+ ....+..|..|.||||+|+..|+.+++++|+++| +++....+..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcC-ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 789999999999999999999973 3334558999999999999999999999999999 6666546899999999999
Q ss_pred HcCCHHHHHHHHhcC--CCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHH
Q 011376 107 TKGHVDVLHVLLSKD--PHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRL 184 (487)
Q Consensus 107 ~~g~~~~v~~Ll~~~--~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~ 184 (487)
..|+.+++++|++.+ +++ +..+..|.||||.|+..|+.+++++|+++|.++ +.+|..|.||||+|+..|+.+++++
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~ 158 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIEL 158 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999998 555 777889999999999999999999999999998 7889999999999999999999999
Q ss_pred HHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCC
Q 011376 185 LLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLP 245 (487)
Q Consensus 185 Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~ 245 (487)
|++.++...+.+|..|+||||+|+..|+.+++++|++..|+|++.+|..|+||+|+|...+
T Consensus 159 Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTT
T ss_pred HHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHH
Confidence 9999867788889999999999999999999999994489999999999999999997654
No 7
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=299.90 Aligned_cols=220 Identities=22% Similarity=0.307 Sum_probs=200.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHH
Q 011376 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAAT 107 (487)
Q Consensus 28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 107 (487)
+|.||||.|+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~ 78 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQ--GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACV 78 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHH
Confidence 689999999999999999999995 7889999999999999999999999999999999998655 8999999999999
Q ss_pred cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHh
Q 011376 108 KGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLG 187 (487)
Q Consensus 108 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~ 187 (487)
.|+.+++++|++.++++. .+.+|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++
T Consensus 79 ~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 155 (261)
T 2xai_A 79 SGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLE 155 (261)
T ss_dssp HTCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 999999999999998873 3456999999999999999999999999998 7889999999999999999999999999
Q ss_pred CCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcCc
Q 011376 188 ADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNGA 262 (487)
Q Consensus 188 ~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~ 262 (487)
.+.+.. .|..|+||||+|+..++.+++++|++ .|+|++.+|.+|+||+|+|...+ ++.++|.+.+.
T Consensus 156 ~g~~~~--~~~~g~t~Lh~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~A~~~~------~~~~~ll~~~~ 221 (261)
T 2xai_A 156 SGADVN--QGKGQDSPLHAVARTASEELACLLMD-FGADTQAKNAEGKRPVELVPPES------PLAQLFLEREG 221 (261)
T ss_dssp HTCCTT--CCBTTBCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSCTTC------THHHHHHHC-C
T ss_pred cCCCCC--CCCCCCChHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCChhhhccccc------cHHHHHHhccC
Confidence 876655 38899999999999999999999999 79999999999999999999654 46777777654
No 8
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=8e-39 Score=305.68 Aligned_cols=220 Identities=23% Similarity=0.234 Sum_probs=184.5
Q ss_pred HHhccCCCCcHHHHHHHcCCHHHHHHHHHhcccc-ccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCc
Q 011376 22 VEEVNELGETALFIAAKNGHLDVVKELLQYMTKE-GVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNAT 100 (487)
Q Consensus 22 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~-~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t 100 (487)
++.+|.+|.||||+|+..|+.++|++|++.+... .++.+|..|.||||+|+..|+.+++++|+++|++++.. |..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA-ERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC-CTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCC
Confidence 4568999999999999999999999999963222 27889999999999999999999999999999998655 899999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCC----------------------------------------------cccCCCCCCc
Q 011376 101 PLITAATKGHVDVLHVLLSKDPHL----------------------------------------------LKIPRSNGKN 134 (487)
Q Consensus 101 pL~~A~~~g~~~~v~~Ll~~~~~~----------------------------------------------~~~~~~~g~t 134 (487)
|||+|+..|+.+++++|++.++.. .+..+..|.|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 999999999999999999987652 2456778999
Q ss_pred HHHHHHHcCCHHHHHHHhhcCCccccccC-CCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcH
Q 011376 135 ALHLAARQGHVDVVKHILKKDTQLARHTD-KKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRI 213 (487)
Q Consensus 135 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~ 213 (487)
|||+|+..|+.+++++|+++|+++ +..+ ..|+||||+|+..|+.+++++|++++. ..+.+|..|+||||+|+..++.
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~tpL~~A~~~~~~ 238 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAGA-DPTARMYGGRTPLGSALLRPNP 238 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHTSSCH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC-CCcccccCCCCHHHHHHHcCCc
Confidence 999999999999999999999998 5555 459999999999999999999999854 4567899999999999999999
Q ss_pred HHHHHHhccCCcCccccccCCCCHHhHHhhCC
Q 011376 214 EIVNELLALSDIDVNILTKDRKTALDIAEGLP 245 (487)
Q Consensus 214 ~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~ 245 (487)
+++++|++ +|++++.+|..|.||+++|....
T Consensus 239 ~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 239 ILARLLRA-HGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHHHHHH-TTCCCCCCC--------------
T ss_pred HHHHHHHH-cCCCcCcCCCcccccccccCCcc
Confidence 99999999 89999999999999999998654
No 9
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-38 Score=324.06 Aligned_cols=264 Identities=27% Similarity=0.368 Sum_probs=147.0
Q ss_pred CCchhhHHHHHHHhHHHHHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 011376 5 TSSVDFDAEVVEIRAAVVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLL 84 (487)
Q Consensus 5 ~~~~e~~~~ll~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll 84 (487)
.++.+.++.+++ .+++++..|..|.||||.|+..|+.+++++|++. +.+.+..+..|.||||+|+..|+.+++++|+
T Consensus 90 ~g~~~~v~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 166 (437)
T 1n11_A 90 IGHTNMVKLLLE-NNANPNLATTAGHTPLHIAAREGHVETVLALLEK--EASQACMTKKGFTPLHVAAKYGKVRVAELLL 166 (437)
T ss_dssp HTCHHHHHHHHH-HTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 345555555555 3555565666666666666666666666666653 3444444555555555555555555555555
Q ss_pred hhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCc--------------------------------ccCCCCC
Q 011376 85 DHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLL--------------------------------KIPRSNG 132 (487)
Q Consensus 85 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~--------------------------------~~~~~~g 132 (487)
+++++++.. +..|.||||+|+..|+.+++++|++.++++. +..+..|
T Consensus 167 ~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 245 (437)
T 1n11_A 167 ERDAHPNAA-GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245 (437)
T ss_dssp HTTCCTTCC-CSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred hCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence 555544332 4445555555555555555555555444430 3344445
Q ss_pred CcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCc
Q 011376 133 KNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKR 212 (487)
Q Consensus 133 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~ 212 (487)
.||||+|+..|+.+++++|++++++. +..+..|.||||+|+..|+.+++++|++++. ..+.+|..|+||||+|+..|+
T Consensus 246 ~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g~ 323 (437)
T 1n11_A 246 VTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGV-MVDATTRMGYTPLHVASHYGN 323 (437)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTC-CTTCCCSSCCCHHHHHHHSSC
T ss_pred CCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCc-cCCCCCCCCCCHHHHHHHcCc
Confidence 55555555555555555555555544 4445555555555555555555555555432 233456666666666666666
Q ss_pred HHHHHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcCcHhHhhcCCChhHhhhhh
Q 011376 213 IEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNGAVRARELNQPRDELRRTV 279 (487)
Q Consensus 213 ~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~l~~~~ 279 (487)
.+++++|++ .|+++|.+|..|+||||+|+..+ +.+++++|+++|++.......+.+++....
T Consensus 324 ~~~v~~Ll~-~gad~n~~~~~g~t~L~~A~~~g----~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~ 385 (437)
T 1n11_A 324 IKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQG----HTDIVTLLLKNGASPNEVSSDGTTPLAIAK 385 (437)
T ss_dssp SHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTT----CHHHHHHHHHTTCCSCCCCSSSCCHHHHHH
T ss_pred HHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHCC----hHHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence 666666666 56666666666666666666666 566666666666665554444555554433
No 10
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.3e-38 Score=293.66 Aligned_cols=227 Identities=27% Similarity=0.320 Sum_probs=209.9
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHH
Q 011376 26 NELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITA 105 (487)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 105 (487)
+..++||||.|+..|+.+.+++|++.. +..++..|.+|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A 80 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIA 80 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhc-hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCc-CCCCCCHHHHH
Confidence 456899999999999999999999873 4557788999999999999999999999999999987654 89999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHH
Q 011376 106 ATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185 (487)
Q Consensus 106 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~L 185 (487)
+..|+.+++++|+++++++ +..+..|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|+..|+.+++++|
T Consensus 81 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L 158 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHIL 158 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 9999999999999999987 778899999999999999999999999999987 78899999999999999999999999
Q ss_pred HhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcCc
Q 011376 186 LGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNGA 262 (487)
Q Consensus 186 l~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~ 262 (487)
++.+. ..+.+|..|+||||+|+..++.+++++|++ .|++++.+|..|+||+|+|...+ ..++.++|.++|+
T Consensus 159 l~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~----~~~i~~lL~~~~a 229 (231)
T 3aji_A 159 LFYKA-STNIQDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAKGGL----GLILKRLAEGEEA 229 (231)
T ss_dssp HHTTC-CSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHSCHHH----HHHHHHHHHHHHH
T ss_pred HhcCC-CccccCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhhH----HHHHHHHHccccc
Confidence 99854 456779999999999999999999999999 79999999999999999998877 8889999988765
No 11
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.7e-38 Score=320.83 Aligned_cols=270 Identities=29% Similarity=0.357 Sum_probs=212.0
Q ss_pred CCCCchhhHHHHHHHhHHHHHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHH
Q 011376 3 GTTSSVDFDAEVVEIRAAVVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQV 82 (487)
Q Consensus 3 a~~~~~e~~~~ll~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~ 82 (487)
+..|+.+.++.+++ .+++++..|..|.||||.|+..|+.++|++|++. +.+++.+|.+|.||||+|+..|+.+++++
T Consensus 22 a~~g~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 98 (437)
T 1n11_A 22 SFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARIGHTNMVKL 98 (437)
T ss_dssp HHHTCHHHHHHHHH-TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHCCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence 44577788887777 4677778888888888888888888888888884 67777788888888888888888888888
Q ss_pred HHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccc
Q 011376 83 LLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHT 162 (487)
Q Consensus 83 Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~ 162 (487)
|+++|++++.. +..|.||||+|+..|+.+++++|++.+.+. ...+..|.||||+|+..|+.+++++|++++.++ +..
T Consensus 99 Ll~~ga~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~ 175 (437)
T 1n11_A 99 LLENNANPNLA-TTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAA 175 (437)
T ss_dssp HHHHTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCC
T ss_pred HHhCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC
Confidence 88888877544 778888888888888888888888887766 556777888888888888888888888888876 667
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHh
Q 011376 163 DKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAE 242 (487)
Q Consensus 163 d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~ 242 (487)
+..|.||||+|+..|+.+++++|++.+.. .+.++..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+
T Consensus 176 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~ 253 (437)
T 1n11_A 176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESVQGVTPLHLAA 253 (437)
T ss_dssp CSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHH
Confidence 78888888888888888888888887544 44567788888888888888888888888 78888888888888888888
Q ss_pred hCCCChhhHHHHHHHHhcCcHhHhhcCCChhHhhhhhhhhhh
Q 011376 243 GLPFSEETAELKECLERNGAVRARELNQPRDELRRTVKEIKQ 284 (487)
Q Consensus 243 ~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~l~~~~~~~~~ 284 (487)
..+ +.+++++|.+.+++.......+.+++.........
T Consensus 254 ~~g----~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~ 291 (437)
T 1n11_A 254 QEG----HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHV 291 (437)
T ss_dssp HTT----CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred HCC----CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 887 77888888888776655555555666555444333
No 12
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=7.4e-39 Score=318.11 Aligned_cols=237 Identities=19% Similarity=0.220 Sum_probs=212.8
Q ss_pred hHHHHHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCC
Q 011376 18 RAAVVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQS 97 (487)
Q Consensus 18 ~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~ 97 (487)
...+.+..|.+|.||||+||..|+.++|++|++. +.+++..|..|.||||+|+..|+.+++++|+++|++.. +.+
T Consensus 9 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~ 83 (364)
T 3ljn_A 9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWH 83 (364)
T ss_dssp -------CCHHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBT
T ss_pred cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccC
Confidence 4456778899999999999999999999999995 78899999999999999999999999999999999553 457
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhc----CCCCccc-----------------CCCCCCcHHHHHHHcC--CHHHHHHHhhc
Q 011376 98 NATPLITAATKGHVDVLHVLLSK----DPHLLKI-----------------PRSNGKNALHLAARQG--HVDVVKHILKK 154 (487)
Q Consensus 98 g~tpL~~A~~~g~~~~v~~Ll~~----~~~~~~~-----------------~~~~g~tpLh~A~~~g--~~~~v~~Ll~~ 154 (487)
|.||||+|+..|+.+++++|++. +..+ +. .+..|.||||+|+..| +.+++++|+++
T Consensus 84 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ 162 (364)
T 3ljn_A 84 GQKPIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL 162 (364)
T ss_dssp TBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence 99999999999999999999998 6554 33 6778999999999999 99999999999
Q ss_pred CCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCccc----ccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCcccc
Q 011376 155 DTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAI----AMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNIL 230 (487)
Q Consensus 155 ~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~----~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~ 230 (487)
|.++ +..|..|.||||+|+..|+.+++++|++.+++. .+..|..|+||||+|+..|+.+++++|++ .|+|++.+
T Consensus 163 ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~~~~ 240 (364)
T 3ljn_A 163 GASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-MGIDVNME 240 (364)
T ss_dssp TCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTCCTTCC
T ss_pred CCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCC
Confidence 9998 788999999999999999999999999976552 66789999999999999999999999999 89999999
Q ss_pred ccCCCCHHhHHhhCCCChhhHHHHHHHHhcCcHhHh
Q 011376 231 TKDRKTALDIAEGLPFSEETAELKECLERNGAVRAR 266 (487)
Q Consensus 231 n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~~~~~ 266 (487)
|..|.||||+|+..+ +.+++++|+++|+....
T Consensus 241 d~~g~tpL~~A~~~g----~~~~v~~Ll~~~~~~~~ 272 (364)
T 3ljn_A 241 DNEHTVPLYLSVRAA----MVLLTKELLQKTDVFLI 272 (364)
T ss_dssp CTTSCCHHHHHHHTC----CHHHHHHHHHHSCHHHH
T ss_pred CCCCCCHHHHHHHhC----hHHHHHHHHHcCCchhh
Confidence 999999999999999 89999999999987644
No 13
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.8e-38 Score=312.82 Aligned_cols=267 Identities=25% Similarity=0.234 Sum_probs=141.9
Q ss_pred CCchhhHHHHHHHhHHHHHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 011376 5 TSSVDFDAEVVEIRAAVVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLL 84 (487)
Q Consensus 5 ~~~~e~~~~ll~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll 84 (487)
.++.+.+..++...+.+++..|..|.||||+|+..|+.++|++|++. +.+++.+|..|.||||+|+..|+.+++++|+
T Consensus 34 ~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll 111 (351)
T 3utm_A 34 SGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLHNACSYGHYEVTELLL 111 (351)
T ss_dssp HTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCcHHHHHHHCCCHHHHHHHH
Confidence 34444455555544445555555555555555555555555555553 4444445555555555555555555555555
Q ss_pred hhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHH---------------------HHcC
Q 011376 85 DHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLA---------------------ARQG 143 (487)
Q Consensus 85 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A---------------------~~~g 143 (487)
++|++++.. |..|.||||+|+..|+.+++++|+++++++ +..+..|.+|++.| +..+
T Consensus 112 ~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (351)
T 3utm_A 112 KHGACVNAM-DLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREA 189 (351)
T ss_dssp HTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhc
Confidence 555444332 444555555555555555555555554443 22222222222211 1111
Q ss_pred CHHHHHHHhhcCCccccccCCCCChHHHHHHhC---CCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHh
Q 011376 144 HVDVVKHILKKDTQLARHTDKKGQTALHMAVKG---ISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELL 220 (487)
Q Consensus 144 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~---~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll 220 (487)
+.+.++.++...... ...+..|.||||+|+.. ++.+++++|++.+.+ .+.+|..|+||||+|+..|+.+++++|+
T Consensus 190 ~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 267 (351)
T 3utm_A 190 DLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLH 267 (351)
T ss_dssp CHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 122222222111111 12345566777777766 446677777766433 4455667777777777777777777777
Q ss_pred ccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcCcHhHhhcCCChhHhhhhhhhh
Q 011376 221 ALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNGAVRARELNQPRDELRRTVKEI 282 (487)
Q Consensus 221 ~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~l~~~~~~~ 282 (487)
+ .|++++.+|..|+||||+|+..+ +.+++++|+++|++.......+.+++....++.
T Consensus 268 ~-~ga~~n~~d~~g~t~L~~A~~~~----~~~~v~~Ll~~gad~~~~~~~g~tal~~a~~~~ 324 (351)
T 3utm_A 268 K-HGAKMNALDSLGQTALHRAALAG----HLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAV 324 (351)
T ss_dssp H-TTCCTTCCCTTSCCHHHHHHHHT----CHHHHHHHHHTTCCTTCCCTTSCCHHHHSCHHH
T ss_pred H-CCCCCCCcCCCCCCHHHHHHHcC----cHHHHHHHHHcCCCCCCcCCCCCChhhhhhHHH
Confidence 6 67777777777777777777666 666777777777766655555666665554433
No 14
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-38 Score=317.22 Aligned_cols=237 Identities=21% Similarity=0.267 Sum_probs=214.4
Q ss_pred HHHHhcc-CCCCcHHHHHHHcCCHHHHHHHHHh------ccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccc
Q 011376 20 AVVEEVN-ELGETALFIAAKNGHLDVVKELLQY------MTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK 92 (487)
Q Consensus 20 ~~~~~~~-~~g~T~Lh~Aa~~g~~~~v~~Ll~~------~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~ 92 (487)
..++..| ..|.||||+|+..|+.+++++|+.. ..+.+++.+|.+|.||||+|+..|+.+++++|+++|++++.
T Consensus 115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 194 (373)
T 2fo1_E 115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI 194 (373)
T ss_dssp TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC
T ss_pred ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcc
Confidence 4677788 7899999999999999988888731 14788999999999999999999999999999999999865
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHhcC---CCCcccCCCCCCcHHHHHHHcC---CHHHHHHHhhcCCcccc------
Q 011376 93 TLGQSNATPLITAATKGHVDVLHVLLSKD---PHLLKIPRSNGKNALHLAARQG---HVDVVKHILKKDTQLAR------ 160 (487)
Q Consensus 93 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~------ 160 (487)
. |..|.||||+|+..|+.+++++|++.+ .++ +..|..|.||||+|+..+ +.+++++|+++|.++..
T Consensus 195 ~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 272 (373)
T 2fo1_E 195 Y-NKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK 272 (373)
T ss_dssp C-CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGT
T ss_pred c-CCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccccc
Confidence 4 899999999999999999999999987 454 678899999999999998 89999999999988732
Q ss_pred -ccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHh
Q 011376 161 -HTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALD 239 (487)
Q Consensus 161 -~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~ 239 (487)
..|..|.||||+|+..|+.+++++|++.++...+.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||
T Consensus 273 ~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~t~l~ 351 (373)
T 2fo1_E 273 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQ 351 (373)
T ss_dssp SSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHHH
T ss_pred CcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccCCCCCCCCHHH
Confidence 2577899999999999999999999998777888899999999999999999999999999 79999999999999999
Q ss_pred HHhhCCCChhhHHHHHHHHhcCcH
Q 011376 240 IAEGLPFSEETAELKECLERNGAV 263 (487)
Q Consensus 240 ~A~~~~~~~~~~~i~~~L~~~g~~ 263 (487)
+|+..+ +.+++++|.++++.
T Consensus 352 ~A~~~g----~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 352 LAQANN----HHNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHTT----CHHHHHHHHTTC--
T ss_pred HHHHcC----CHHHHHHHHhcCcc
Confidence 999999 89999999998865
No 15
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.1e-37 Score=306.27 Aligned_cols=247 Identities=25% Similarity=0.245 Sum_probs=160.4
Q ss_pred CCCCchhhHHHHHHHhHHHHHhccC-CCCcHHHHHHHcCCHHHHHHHHHhccccc-------------------------
Q 011376 3 GTTSSVDFDAEVVEIRAAVVEEVNE-LGETALFIAAKNGHLDVVKELLQYMTKEG------------------------- 56 (487)
Q Consensus 3 a~~~~~e~~~~ll~~~~~~~~~~~~-~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~------------------------- 56 (487)
+..|+.|.++.||+ .++++|.++. .|.||||+||..|+.++|++|++. +++
T Consensus 33 v~~g~~~~V~~LL~-~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (337)
T 4g8k_A 33 VQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFILAAIAGSVKLLK 109 (337)
T ss_dssp HHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHH-CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc--CCchhhhccCCCchhHHHHhcccchhhH
Confidence 45688888888887 5788888775 489999999999999999999986 333
Q ss_pred --------cccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccc---------cCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 011376 57 --------VSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTK---------TLGQSNATPLITAATKGHVDVLHVLLS 119 (487)
Q Consensus 57 --------~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~---------~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 119 (487)
++..|..|.||||+|+..|+.+++++|+++|++++. ..+..|.||||+|+..|+.+++++|++
T Consensus 110 ~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~ 189 (337)
T 4g8k_A 110 LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 189 (337)
T ss_dssp HHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHh
Confidence 344455666666666666666666666666655432 123446666666666666666666664
Q ss_pred c-CCCCcccCCCCCCcHHHHHHHcCC----HHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCccccc
Q 011376 120 K-DPHLLKIPRSNGKNALHLAARQGH----VDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAM 194 (487)
Q Consensus 120 ~-~~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~ 194 (487)
+ ++++ +..|..|.||+|.++..+. .+++++|+++|+++ +.+|..|+||||+|+..|+.++++.|+...+...+
T Consensus 190 ~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn 267 (337)
T 4g8k_A 190 EMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN 267 (337)
T ss_dssp HSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT
T ss_pred ccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc
Confidence 3 4444 5556666666666554332 23556666666665 55666666666666666666666666665555555
Q ss_pred CcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcCcHh
Q 011376 195 LPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNGAVR 264 (487)
Q Consensus 195 ~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~~~ 264 (487)
.+|.+|+||||+|+..|+.+++++|++ .|+|+|.+ +|||+|+..+ +.+++++|+++|++.
T Consensus 268 ~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GAd~n~~-----~~L~~A~~~~----~~~iv~~Ll~~GA~~ 327 (337)
T 4g8k_A 268 DTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCG-----DLVMTARRNY----DHSLVKVLLSHGAKE 327 (337)
T ss_dssp CBCTTSCBHHHHHHHTTCHHHHHHHHT-TSCSSTTC-----CHHHHHHHTT----CHHHHHHHHHTTCCC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-----CHHHHHHHcC----CHHHHHHHHHCcCCC
Confidence 666666666666666666666666666 56665533 4666666666 566666666666654
No 16
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=7.5e-38 Score=308.34 Aligned_cols=268 Identities=24% Similarity=0.258 Sum_probs=234.0
Q ss_pred HHhHHHHHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCC
Q 011376 16 EIRAAVVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLG 95 (487)
Q Consensus 16 ~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~ 95 (487)
.......+..+..|.|+||.||..|+.+.|+.|+.. .+.+++..|..|.||||+|+..|+.+++++|+++|++++.. |
T Consensus 11 ~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~ 88 (351)
T 3utm_A 11 ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK-D 88 (351)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-C
T ss_pred cCCceeeeeeccccchhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-C
Confidence 345567777888999999999999999999999985 47788899999999999999999999999999999998655 8
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHH--
Q 011376 96 QSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMA-- 173 (487)
Q Consensus 96 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A-- 173 (487)
..|.||||+|+..|+.+++++|+++++++ +..+..|.||||+|+..|+.+++++|+++|.++ +..+..|.||+|+|
T Consensus 89 ~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~ 166 (351)
T 3utm_A 89 KGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPT 166 (351)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSS
T ss_pred CCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhh
Confidence 99999999999999999999999999987 778899999999999999999999999999998 77899999998875
Q ss_pred -------------------HhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhc---CcHHHHHHHhccCCcCccccc
Q 011376 174 -------------------VKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRK---KRIEIVNELLALSDIDVNILT 231 (487)
Q Consensus 174 -------------------~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~---~~~~iv~~Ll~~~g~d~~~~n 231 (487)
+..+..+.++.++.... .....+..|+||||+|+.. ++.+++++|++ .|++++.+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~ 244 (351)
T 3utm_A 167 PELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI-INFKQPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKN 244 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCC-TTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCC
T ss_pred hhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhc-ccccCCCCCCCHHHHHHHHhCccHHHHHHHHHH-cCCCcCCcC
Confidence 45666777777776543 3344678899999999998 67899999999 899999999
Q ss_pred cCCCCHHhHHhhCCCChhhHHHHHHHHhcCcHhHhhcCCChhHhhhhhhhhhhhhHHHHHHh
Q 011376 232 KDRKTALDIAEGLPFSEETAELKECLERNGAVRARELNQPRDELRRTVKEIKQHVHTQLEQT 293 (487)
Q Consensus 232 ~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 293 (487)
..|+||||+|+..+ +.+++++|++.|++.......+.+++.........+..+.+-+.
T Consensus 245 ~~g~t~L~~A~~~g----~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 302 (351)
T 3utm_A 245 KDFMTPLHVAAERA----HNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302 (351)
T ss_dssp TTCCCHHHHHHHTT----CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHcC----CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 99999999999999 88999999999998877777788888877776666666555443
No 17
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.5e-37 Score=295.34 Aligned_cols=254 Identities=27% Similarity=0.285 Sum_probs=225.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhccccccccC-CCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHH
Q 011376 27 ELGETALFIAAKNGHLDVVKELLQYMTKEGVSLK-SNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITA 105 (487)
Q Consensus 27 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~-~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 105 (487)
.+|.||||.|++.|+.++|++|++. +.+++.. +..|.||||+|+..|+.+++++|+++|+++... |..|.||||+|
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A 79 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHH
Confidence 3578999999999999999999995 6777776 788999999999999999999999999988654 89999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccc----------CCCCChHHHHHHh
Q 011376 106 ATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHT----------DKKGQTALHMAVK 175 (487)
Q Consensus 106 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~----------d~~g~t~Lh~A~~ 175 (487)
+..|+.+++++|+++++++ +..+..|.||||+|+..|+.+++++|++++.++ +.. +..|.||||+|+.
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~ 157 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAE 157 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHH
Confidence 9999999999999999987 778899999999999999999999999999887 443 7789999999999
Q ss_pred CCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCc----HHHHHHHhccCCcCccccccCCCCHHhHHhhCCCChhhH
Q 011376 176 GISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKR----IEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETA 251 (487)
Q Consensus 176 ~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~----~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~ 251 (487)
.|+.+++++|++..+...+..|..|+||||+|+..++ .+++++|++ .|++++.+|..|+||||+|+..+ +.
T Consensus 158 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~----~~ 232 (285)
T 1wdy_A 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKK----HL 232 (285)
T ss_dssp HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTT----CH
T ss_pred cCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcC----CH
Confidence 9999999999998666677889999999999999999 999999999 89999999999999999999999 88
Q ss_pred HHHHHHHh-cCcHhHhhcCCChhHhhhhhhhhhhhhHHHH
Q 011376 252 ELKECLER-NGAVRARELNQPRDELRRTVKEIKQHVHTQL 290 (487)
Q Consensus 252 ~i~~~L~~-~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 290 (487)
+++++|++ .|++.......+.+++.........++.+.+
T Consensus 233 ~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~L 272 (285)
T 1wdy_A 233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272 (285)
T ss_dssp HHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHH
Confidence 99999998 7877666666677777666554444444333
No 18
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.2e-37 Score=287.02 Aligned_cols=233 Identities=22% Similarity=0.300 Sum_probs=212.3
Q ss_pred HhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHH
Q 011376 23 EEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPL 102 (487)
Q Consensus 23 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 102 (487)
+..|..|.||||.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++++++.....+..|.|||
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L 80 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEA--GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL 80 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence 45788999999999999999999999995 7888999999999999999999999999999999998877777899999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCC-HHH
Q 011376 103 ITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGIS-SEV 181 (487)
Q Consensus 103 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~e~ 181 (487)
|+|+..|+.+++++|++.++++ +..+..|.||||.|+..|+.+++++|++++.++ +..+..|.||||+|+..++ .++
T Consensus 81 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~ 158 (240)
T 3eu9_A 81 HWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDP 158 (240)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHH
Confidence 9999999999999999999887 778899999999999999999999999999987 7889999999999996555 899
Q ss_pred HHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcC
Q 011376 182 VRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNG 261 (487)
Q Consensus 182 v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g 261 (487)
+++|++.+.+.....+..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|+..+ ..+++++|.+++
T Consensus 159 ~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~----~~~~v~~L~~~~ 233 (240)
T 3eu9_A 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAKQRK----NVWMINHLQEAR 233 (240)
T ss_dssp HHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCBCTTSCBHHHHHHHTT----CHHHHHHHHHHC
T ss_pred HHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcC----cHHHHHHHHHhh
Confidence 9999998766554433489999999999999999999999 79999999999999999999999 899999999988
Q ss_pred cHh
Q 011376 262 AVR 264 (487)
Q Consensus 262 ~~~ 264 (487)
+..
T Consensus 234 ~~~ 236 (240)
T 3eu9_A 234 QAK 236 (240)
T ss_dssp ---
T ss_pred hcc
Confidence 754
No 19
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-38 Score=298.14 Aligned_cols=217 Identities=29% Similarity=0.360 Sum_probs=171.4
Q ss_pred hccCCCCcHHHHHHHcCCHHHHHHHHHhccc------cccccCCCCCCcHHHHHHHcCcH-HHHHHHHhhCCcccccCCC
Q 011376 24 EVNELGETALFIAAKNGHLDVVKELLQYMTK------EGVSLKSNSGLDPLHIAASQGYQ-DIVQVLLDHYPELTKTLGQ 96 (487)
Q Consensus 24 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~------~~~~~~~~~g~tpLh~A~~~g~~-~iv~~Ll~~~~~~~~~~~~ 96 (487)
.+|.++.+||+.||..|+.++|++|++.+.. ..++..+..|.||||.|+..++. .++++|++.|++++.. |.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~-d~ 84 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVT-SQ 84 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCC-CT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCc-CC
Confidence 4677788999999999999999999986432 12556778899999999988776 5889999999998655 99
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhC
Q 011376 97 SNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKG 176 (487)
Q Consensus 97 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 176 (487)
+|+||||+|+..|+.+++++|++.++++ +..+.+|.||+|.|+..++.++++.|++.|+++ +.+|..|+||||+|+.+
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~ 162 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSG 162 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHC
Confidence 9999999999999999999999999987 778899999999999999999999999999998 78899999999999999
Q ss_pred CCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCC
Q 011376 177 ISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLP 245 (487)
Q Consensus 177 ~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~ 245 (487)
|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++ .|+|++.+|..|+||||+|+..+
T Consensus 163 g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 163 GHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp TCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTC
T ss_pred CCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCC
Confidence 999999999998654 56789999999999999999999999999 89999999999999999998765
No 20
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.1e-37 Score=293.10 Aligned_cols=234 Identities=20% Similarity=0.211 Sum_probs=210.6
Q ss_pred CCCCchhhHHHHHHHhHHHHHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHH
Q 011376 3 GTTSSVDFDAEVVEIRAAVVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQV 82 (487)
Q Consensus 3 a~~~~~e~~~~ll~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~ 82 (487)
+..|+.+.++.+++ .+++++.+|.+|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++
T Consensus 11 ~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 87 (261)
T 2xai_A 11 AIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNACVSGSWDCVNL 87 (261)
T ss_dssp HHHTCHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 45678899998888 5788999999999999999999999999999995 78899999999999999999999999999
Q ss_pred HHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccc
Q 011376 83 LLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHT 162 (487)
Q Consensus 83 Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~ 162 (487)
|+++|+++.. +.+|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|+++|+++. .
T Consensus 88 Ll~~g~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~ 162 (261)
T 2xai_A 88 LLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGADVN--Q 162 (261)
T ss_dssp HHHTTCCSSC--SCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT--C
T ss_pred HHHCCCCCCC--CCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC--C
Confidence 9999998753 556999999999999999999999999987 7788999999999999999999999999999984 3
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCC-------cCccccccCCC
Q 011376 163 DKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSD-------IDVNILTKDRK 235 (487)
Q Consensus 163 d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g-------~d~~~~n~~G~ 235 (487)
+..|.||||+|+..|+.+++++|++.+.+ .+.+|..|+||||+|+..+ ++++.|++..+ ++++.+|..|+
T Consensus 163 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~ 239 (261)
T 2xai_A 163 GKGQDSPLHAVARTASEELACLLMDFGAD-TQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGI 239 (261)
T ss_dssp CBTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCT
T ss_pred CCCCCChHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhch
Confidence 88999999999999999999999999554 6678999999999999665 48888888432 35778999999
Q ss_pred CHHhHHhhCCCC
Q 011376 236 TALDIAEGLPFS 247 (487)
Q Consensus 236 t~L~~A~~~~~~ 247 (487)
||+|.+.+....
T Consensus 240 t~l~~~~~~~~p 251 (261)
T 2xai_A 240 QQHHKITKLVLP 251 (261)
T ss_dssp TCGGGGGGSSSC
T ss_pred hccccCcccCCc
Confidence 999999988743
No 21
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=289.04 Aligned_cols=244 Identities=19% Similarity=0.176 Sum_probs=193.7
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHhcc---------ccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCC
Q 011376 25 VNELGETALFIAAKNGHLDVVKELLQYMT---------KEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLG 95 (487)
Q Consensus 25 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~---------~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~ 95 (487)
....|.|+||+|+..|+.+.+..++.... ...++.+|.+|+||||+|+..|+.+++++|++.|++++.. |
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-~ 89 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNII-T 89 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEE-C
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc-C
Confidence 34679999999999999887777665421 2235667889999999999999999999999999997655 8
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHh
Q 011376 96 QSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVK 175 (487)
Q Consensus 96 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 175 (487)
.+|.||||+|+..|+.+++++|++.++++ +..|.+|.||||+|+..|+.+++++|+++++++ + .+.+|.||||+|+.
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~ 166 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAAR 166 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHH
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHH
Confidence 99999999999999999999999999887 778999999999999999999999999999987 3 34559999999999
Q ss_pred CCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHH
Q 011376 176 GISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKE 255 (487)
Q Consensus 176 ~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~ 255 (487)
.|+.+++++|++.+.+ .+.+|..|+||||+|+..|+.+++++|++ .|++++. |..|+||||+|+..+ ..++++
T Consensus 167 ~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~----~~~~v~ 239 (285)
T 3d9h_A 167 RGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTA----SEELAC 239 (285)
T ss_dssp HTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTT----CHHHHH
T ss_pred cCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcC----CHHHHH
Confidence 9999999999998654 56679999999999999999999999999 7999995 999999999999999 889999
Q ss_pred HHHhcCcHhHhhcCCChhHhhhhh
Q 011376 256 CLERNGAVRARELNQPRDELRRTV 279 (487)
Q Consensus 256 ~L~~~g~~~~~~~~~~~~~l~~~~ 279 (487)
+|++.|++.......+.+++....
T Consensus 240 ~Ll~~gad~~~~d~~g~t~l~~A~ 263 (285)
T 3d9h_A 240 LLMDFGADTQAKNAEGKRPVELVP 263 (285)
T ss_dssp HHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred HHHHCCCCCCCcCCCCCCHHHHhc
Confidence 999999987777777777776554
No 22
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=7e-36 Score=293.44 Aligned_cols=232 Identities=29% Similarity=0.383 Sum_probs=201.1
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCC-CCCcHHHHHHHcCcHHHHHHHHhhCCcccc------------
Q 011376 26 NELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSN-SGLDPLHIAASQGYQDIVQVLLDHYPELTK------------ 92 (487)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~-~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~------------ 92 (487)
+.+|+||||.|++.|+.++|++||+. |++++.++. .|+||||+|+..|+.++|++|+++|+++..
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~--Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA 99 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence 44578999999999999999999995 788888775 599999999999999999999999876532
Q ss_pred --------------------cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCc---------ccCCCCCCcHHHHHHHcC
Q 011376 93 --------------------TLGQSNATPLITAATKGHVDVLHVLLSKDPHLL---------KIPRSNGKNALHLAARQG 143 (487)
Q Consensus 93 --------------------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~---------~~~~~~g~tpLh~A~~~g 143 (487)
..|..|.||||+|+..|+.+++++|++.++++. ...+..|.||||+|+..|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g 179 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 179 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence 347789999999999999999999999987652 123457899999999999
Q ss_pred CHHHHHHHhhc-CCccccccCCCCChHHHHHHhCCC----HHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHH
Q 011376 144 HVDVVKHILKK-DTQLARHTDKKGQTALHMAVKGIS----SEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNE 218 (487)
Q Consensus 144 ~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~----~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~ 218 (487)
+.+++++|+++ |.++ +..|..|.|++|.++..+. .+++++|++++. ..+.+|..|+||||+|+..|+.++++.
T Consensus 180 ~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~ga-d~n~~d~~g~t~L~~a~~~~~~~~v~~ 257 (337)
T 4g8k_A 180 HVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA-DVNVRGERGKTPLILAVEKKHLGLVQR 257 (337)
T ss_dssp CHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTC-CTTCCCGGGCCHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHhhhhHHHHH
Confidence 99999999965 7776 7889999999998774332 457888888854 456789999999999999999999999
Q ss_pred HhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcCcHhH
Q 011376 219 LLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNGAVRA 265 (487)
Q Consensus 219 Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~~~~ 265 (487)
|++..|++++.+|.+|+||||+|+..+ +.+++++|+++|++..
T Consensus 258 Ll~~~~~~vn~~d~~G~TpL~~A~~~g----~~~iv~~Ll~~GAd~n 300 (337)
T 4g8k_A 258 LLEQEHIEINDTDSDGKTALLLAVELK----LKKIAELLCKRGASTD 300 (337)
T ss_dssp HHTSTTCCTTCBCTTSCBHHHHHHHTT----CHHHHHHHHTTSCSST
T ss_pred HHHhcCCcccCcCCCCCCHHHHHHHcC----CHHHHHHHHHCCCCCC
Confidence 999789999999999999999999999 8899999999998653
No 23
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.8e-36 Score=290.45 Aligned_cols=240 Identities=18% Similarity=0.162 Sum_probs=211.7
Q ss_pred CCchhhHHHHHHHhHHHHHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHH
Q 011376 5 TSSVDFDAEVVEIRAAVVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLL 84 (487)
Q Consensus 5 ~~~~e~~~~ll~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll 84 (487)
..+.+.+.++|... .++.+|.+|.||||+|+..|+.++|++|++. +.+++.. +|.||||+|+..|+.+++++|+
T Consensus 9 ~~~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 9 TWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNA--GALKNLL--ENEFPLHQAATLEDTKIVKILL 82 (285)
T ss_dssp GCCHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TGGGSCC--TTCCHHHHHTTSSSCHHHHHHH
T ss_pred hcCHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCC--CCCCHHHHHHHcCCHHHHHHHH
Confidence 34556677777755 5899999999999999999999999999996 6677766 5999999999999999999999
Q ss_pred hhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCC-CcHHHHHHHcCCHHHHHHHhhcCCccccccC
Q 011376 85 DHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNG-KNALHLAARQGHVDVVKHILKKDTQLARHTD 163 (487)
Q Consensus 85 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d 163 (487)
++|++++.. |..|.||||+|+..|+.+++++|+++++++ +..+..| .||||+|+..|+.+++++|++++++... .
T Consensus 83 ~~ga~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~ 158 (285)
T 3kea_A 83 FSGLDDSQF-DDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--L 158 (285)
T ss_dssp HTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--C
T ss_pred HCCCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--c
Confidence 999998654 899999999999999999999999999987 7788888 7999999999999999999999987622 2
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcH-HHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHh
Q 011376 164 KKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTA-LHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAE 242 (487)
Q Consensus 164 ~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~-Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~ 242 (487)
..|.||||+|+..|+.+++++|++++ ...+.+|..|+|| ||+|+..++.+++++|++ .|++++.+|. .|.
T Consensus 159 ~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~-------~a~ 229 (285)
T 3kea_A 159 AILLSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIYSANL-------ENV 229 (285)
T ss_dssp STHHHHHHHHHHTTCHHHHHHHHHHH-HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCSTTTTG-------GGG
T ss_pred cCCccHHHHHHHcChHHHHHHHHHcC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCh-------hhh
Confidence 38999999999999999999999984 4566789999998 999999999999999999 7999999984 445
Q ss_pred hCCCChhhHHHHHHHHhcCcHhHhh
Q 011376 243 GLPFSEETAELKECLERNGAVRARE 267 (487)
Q Consensus 243 ~~~~~~~~~~i~~~L~~~g~~~~~~ 267 (487)
..+ +.+++++|+++|++....
T Consensus 230 ~~~----~~~iv~~Ll~~g~~~~~~ 250 (285)
T 3kea_A 230 LLD----DAEIAKMIIEKHVEYKSD 250 (285)
T ss_dssp TTT----CHHHHHHHHHHHHHHTTC
T ss_pred hcC----CHHHHHHHHHcCCCCCCc
Confidence 566 889999999999875443
No 24
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-36 Score=292.76 Aligned_cols=214 Identities=24% Similarity=0.317 Sum_probs=192.2
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHH
Q 011376 26 NELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITA 105 (487)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 105 (487)
+..|.||||.||..|+.++|++|++. +.+++..|.+|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~tpL~~A 113 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPLHAA 113 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHH
Confidence 44678999999999999999999995 7889999999999999999999999999999999998655 88999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcC-Cc-------------------------cc
Q 011376 106 ATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKD-TQ-------------------------LA 159 (487)
Q Consensus 106 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~-~~-------------------------~~ 159 (487)
+..|+.+++++|+++++++ +..+..|.||||+|+..++.++++.++... .+ ..
T Consensus 114 ~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (299)
T 1s70_B 114 ASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192 (299)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence 9999999999999999987 778899999999999999999998877542 22 12
Q ss_pred cccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHh
Q 011376 160 RHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALD 239 (487)
Q Consensus 160 ~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~ 239 (487)
...+..|.||||+|+..|+.+++++|++.+. ..+.+|..|+||||+|+..|+.+++++|++ .|+|++.+|..|+||+|
T Consensus 193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~ 270 (299)
T 1s70_B 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARY-DVNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFD 270 (299)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTTT
T ss_pred hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCcCCCCCCHHH
Confidence 2356789999999999999999999999864 456789999999999999999999999999 89999999999999999
Q ss_pred HHhhCC
Q 011376 240 IAEGLP 245 (487)
Q Consensus 240 ~A~~~~ 245 (487)
+|.+..
T Consensus 271 ~A~~~~ 276 (299)
T 1s70_B 271 VADEDI 276 (299)
T ss_dssp SCCSGG
T ss_pred HHHHHH
Confidence 997543
No 25
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=6.4e-36 Score=277.21 Aligned_cols=217 Identities=26% Similarity=0.326 Sum_probs=202.2
Q ss_pred CCCCchhhHHHHHHHhHHHHHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHH
Q 011376 3 GTTSSVDFDAEVVEIRAAVVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQV 82 (487)
Q Consensus 3 a~~~~~e~~~~ll~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~ 82 (487)
+..|+.+.+..+++..+..++..|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++
T Consensus 14 ~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 91 (231)
T 3aji_A 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIAASAGXDEIVKA 91 (231)
T ss_dssp HHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCCHHHHHHHcCHHHHHHH
Confidence 4568899999999999999999999999999999999999999999995 78889999999999999999999999999
Q ss_pred HHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccc
Q 011376 83 LLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHT 162 (487)
Q Consensus 83 Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~ 162 (487)
|+++|++++.. |..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++++.++ +.+
T Consensus 92 Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~ 168 (231)
T 3aji_A 92 LLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQ 168 (231)
T ss_dssp HHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCC
T ss_pred HHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-ccc
Confidence 99999998654 899999999999999999999999999887 778899999999999999999999999999998 788
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcC
Q 011376 163 DKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDID 226 (487)
Q Consensus 163 d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d 226 (487)
|..|.||||+|+..|+.+++++|++++.+ .+.+|..|.||||+|+..++.+++++|.+ .|++
T Consensus 169 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~lL~~-~~a~ 230 (231)
T 3aji_A 169 DTEGNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILKRLAEG-EEAS 230 (231)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHHHHHHH-HHHC
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHHHHHcc-cccc
Confidence 99999999999999999999999999654 56789999999999999999999999988 5554
No 26
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=7.3e-37 Score=304.72 Aligned_cols=259 Identities=18% Similarity=0.198 Sum_probs=219.4
Q ss_pred HHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCC-CCCCcHHHHHHHcCcHHHHHHHH--------hhCCcccc
Q 011376 22 VEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKS-NSGLDPLHIAASQGYQDIVQVLL--------DHYPELTK 92 (487)
Q Consensus 22 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-~~g~tpLh~A~~~g~~~iv~~Ll--------~~~~~~~~ 92 (487)
.+..|..|.||||.|+..|+ ++++.|+. .+++..| ..|+||||+|+..|+.+++++|+ +.|.+++.
T Consensus 87 ~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~----~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~ 161 (373)
T 2fo1_E 87 PTEPEPESPIKLHTEAAGSY-AITEPITR----ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA 161 (373)
T ss_dssp -------CCCHHHHHHHSSS-CCCSCCST----TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC
T ss_pred ccCCCCCCccHHHHHhcCCc-hHHHHhcc----ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcC
Confidence 34578899999999999654 77777653 4677777 78999999999999998887776 78888865
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcC---CccccccCCCCChH
Q 011376 93 TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKD---TQLARHTDKKGQTA 169 (487)
Q Consensus 93 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~---~~~~~~~d~~g~t~ 169 (487)
. |..|.||||+|+..|+.+++++|+++++++ +..+..|.||||+|+..|+.+++++|++++ .++ +..|..|.||
T Consensus 162 ~-d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~ 238 (373)
T 2fo1_E 162 M-DCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTA 238 (373)
T ss_dssp C-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCH
T ss_pred C-CCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCH
Confidence 5 899999999999999999999999999987 778899999999999999999999999987 455 7789999999
Q ss_pred HHHHHhCC---CHHHHHHHHhCCccccc-------CcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHh
Q 011376 170 LHMAVKGI---SSEVVRLLLGADSAIAM-------LPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALD 239 (487)
Q Consensus 170 Lh~A~~~~---~~e~v~~Ll~~~~~~~~-------~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~ 239 (487)
||+|+..+ +.+++++|++.+.+... ..|..|+||||+|+..|+.+++++|++..|++++.+|..|+||||
T Consensus 239 L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~ 318 (373)
T 2fo1_E 239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM 318 (373)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHH
T ss_pred HHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHH
Confidence 99999988 89999999998765432 357799999999999999999999998667999999999999999
Q ss_pred HHhhCCCChhhHHHHHHHHhcCcHhHhhcCCChhHhhhhhhhhhhhhHHHHHH
Q 011376 240 IAEGLPFSEETAELKECLERNGAVRARELNQPRDELRRTVKEIKQHVHTQLEQ 292 (487)
Q Consensus 240 ~A~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 292 (487)
+|+..+ +.+++++|+++|++.......+.+++.........++.+.+.+
T Consensus 319 ~A~~~g----~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~ 367 (373)
T 2fo1_E 319 LAAQEG----RIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367 (373)
T ss_dssp HHHHHT----CHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHcC----CHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 999999 8999999999999877777777788877766655555555443
No 27
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3.7e-36 Score=298.61 Aligned_cols=247 Identities=18% Similarity=0.149 Sum_probs=214.2
Q ss_pred CCCCchhhHHHHHHHhHHHHHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHH
Q 011376 3 GTTSSVDFDAEVVEIRAAVVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQV 82 (487)
Q Consensus 3 a~~~~~e~~~~ll~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~ 82 (487)
+..++.+.++.+++ .+++++.+|..|.||||+|+..|+.++|++|++. +. +..+.+|.||||+|+..|+.+++++
T Consensus 28 a~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~--~~~~~~g~t~L~~A~~~g~~~~v~~ 102 (364)
T 3ljn_A 28 ARKGQTDEVRRLIE-TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV--GE--VHSLWHGQKPIHLAVMANKTDLVVA 102 (364)
T ss_dssp HHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH--CC--CCCCBTTBCHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHH-cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC--CC--CccccCCCCHHHHHHHcCCHHHHHH
Confidence 45688899999997 5789999999999999999999999999999996 33 3334589999999999999999999
Q ss_pred HHhh----CCcccc----------------cCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCCcccCCCCCCcHHHHHH
Q 011376 83 LLDH----YPELTK----------------TLGQSNATPLITAATKG--HVDVLHVLLSKDPHLLKIPRSNGKNALHLAA 140 (487)
Q Consensus 83 Ll~~----~~~~~~----------------~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~ 140 (487)
|+++ +.++.. ..|..|.||||+|+..| +.+++++|++.++++ +..|..|.||||+|+
T Consensus 103 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~ 181 (364)
T 3ljn_A 103 LVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAM 181 (364)
T ss_dssp HHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHH
T ss_pred HHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence 9999 666543 14778999999999999 999999999999987 788999999999999
Q ss_pred HcCCHHHHHHHhhcCCc-----cccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHH
Q 011376 141 RQGHVDVVKHILKKDTQ-----LARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEI 215 (487)
Q Consensus 141 ~~g~~~~v~~Ll~~~~~-----~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~i 215 (487)
..|+.+++++|++++++ + +..|..|.||||+|+..|+.+++++|++++.+ .+.+|..|+||||+|+..|+.++
T Consensus 182 ~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~ 259 (364)
T 3ljn_A 182 EFRNREALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLL 259 (364)
T ss_dssp HTTCHHHHHHHHHHCSCSSSCCT-TCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHH
T ss_pred HcCCHHHHHHHHhcccccccccc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHH
Confidence 99999999999999988 5 78899999999999999999999999998655 56789999999999999999999
Q ss_pred HHHHhccCCcCccc------------cccCCCCHHhHHhhCCCChhhHHHHHHHHhcCc
Q 011376 216 VNELLALSDIDVNI------------LTKDRKTALDIAEGLPFSEETAELKECLERNGA 262 (487)
Q Consensus 216 v~~Ll~~~g~d~~~------------~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~ 262 (487)
+++|++ .|++++. .+..|.||++.|+..+ ..+.+..|++.+.
T Consensus 260 v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~----~~~~v~~ll~~~~ 313 (364)
T 3ljn_A 260 TKELLQ-KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP----SKQEVLQLLQEKL 313 (364)
T ss_dssp HHHHHH-HSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCH----HHHHHHHHHHHHH
T ss_pred HHHHHH-cCCchhhhcCcccCcccccccccccccchhhhhcc----CHHHHHHHHHHHH
Confidence 999999 5666533 5678889999888776 4444444444443
No 28
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.1e-35 Score=274.12 Aligned_cols=214 Identities=20% Similarity=0.259 Sum_probs=136.8
Q ss_pred CCHHHHHHHHHhcccccccc-CCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 011376 40 GHLDVVKELLQYMTKEGVSL-KSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLL 118 (487)
Q Consensus 40 g~~~~v~~Ll~~~~~~~~~~-~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 118 (487)
|+.+++++|++. +.+++. .|.+|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.+++++|+
T Consensus 2 g~~~~i~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 2 DAPAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ---CCEETTEET--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHc--CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHH
Confidence 455566666653 344433 2566666666666666666666666666665433 666666666666666666666666
Q ss_pred hcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCC
Q 011376 119 SKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDK 198 (487)
Q Consensus 119 ~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~ 198 (487)
+.++...+..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+. ..+.+|.
T Consensus 79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~ 156 (223)
T 2f8y_A 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGA-NKDMQNN 156 (223)
T ss_dssp HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC-CTTCCCT
T ss_pred HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCcCC
Confidence 6665444556666666666666666666666666666665 5566666677777766666677766666633 3445566
Q ss_pred CCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcCcH
Q 011376 199 FGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNGAV 263 (487)
Q Consensus 199 ~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~~ 263 (487)
.|+||||+|+..++.+++++|++ .|++++.+|..|.||+|+|+..+ +.+++++|.+.|+.
T Consensus 157 ~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~----~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 157 REETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERM----HHDIVRLLDEYNLV 216 (223)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTT----CHHHHHHHHHTTCS
T ss_pred CCcCHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhc----chHHHHHHHHcCCC
Confidence 67777777777777777777766 56677777777777777776666 66666666666654
No 29
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.2e-36 Score=281.66 Aligned_cols=232 Identities=19% Similarity=0.219 Sum_probs=175.6
Q ss_pred ccccCCCCCCcHHHHHHHcC-------------cHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 011376 56 GVSLKSNSGLDPLHIAASQG-------------YQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDP 122 (487)
Q Consensus 56 ~~~~~~~~g~tpLh~A~~~g-------------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 122 (487)
+++.+|.+|+||||+|+..| +.+++++|+++|+++....|..|.||||+|+..|+.+++++|++.++
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 57888999999999999987 89999999999999988889999999999999999999999999999
Q ss_pred CCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCc
Q 011376 123 HLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNT 202 (487)
Q Consensus 123 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T 202 (487)
++ +..|..|.||||+|+..|+.+++++|+++++...+..+..|.||||+|+..|+.+++++|++.+. ..+.+|..|+|
T Consensus 82 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~d~~g~t 159 (253)
T 1yyh_A 82 DA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA-DVNAVDDLGKS 159 (253)
T ss_dssp CT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTC-CTTCBCTTSCB
T ss_pred CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCC-CCCCcCCCCCC
Confidence 87 77889999999999999999999999999984448889999999999999999999999999855 45677999999
Q ss_pred HHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcCcHhHhhcCCChhHhhhhhhhh
Q 011376 203 ALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNGAVRARELNQPRDELRRTVKEI 282 (487)
Q Consensus 203 ~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~l~~~~~~~ 282 (487)
|||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..+ ..+++++|+++|++.......+.+++....+..
T Consensus 160 ~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~----~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g 234 (253)
T 1yyh_A 160 ALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREG----SYETAKVLLDHFANRDITDHMDRLPRDIAQERM 234 (253)
T ss_dssp HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHT----CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCC----CHHHHHHHHHcCCCccccccCCCCHHHHHHHcC
Confidence 9999999999999999999 79999999999999999999998 889999999999988777777888888777777
Q ss_pred hhhhHHHHHHhh
Q 011376 283 KQHVHTQLEQTR 294 (487)
Q Consensus 283 ~~~~~~~l~~~~ 294 (487)
..++.+.+.+.+
T Consensus 235 ~~~i~~~l~~~~ 246 (253)
T 1yyh_A 235 HHDIVRLLDLEH 246 (253)
T ss_dssp CHHHHHHHHC--
T ss_pred CHHHHHHHHHHh
Confidence 666666655443
No 30
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.4e-35 Score=281.53 Aligned_cols=217 Identities=22% Similarity=0.245 Sum_probs=186.6
Q ss_pred cccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcc--cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCc
Q 011376 57 VSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPEL--TKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKN 134 (487)
Q Consensus 57 ~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t 134 (487)
++.+|.+|+||||+|+..|+.+++++|++++++. ...+|..|.||||+|+..|+.+++++|+++++++ +..+..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence 4678999999999999999999999999998872 3456899999999999999999999999999987 788899999
Q ss_pred HHHHHHHcCCHHHHHHHhhcCCcc----------------------------------------------ccccCCCCCh
Q 011376 135 ALHLAARQGHVDVVKHILKKDTQL----------------------------------------------ARHTDKKGQT 168 (487)
Q Consensus 135 pLh~A~~~g~~~~v~~Ll~~~~~~----------------------------------------------~~~~d~~g~t 168 (487)
|||+|+..|+.+++++|++++++. .+..+..|.|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 999999999999999999987651 2557889999
Q ss_pred HHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCCCh
Q 011376 169 ALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSE 248 (487)
Q Consensus 169 ~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~ 248 (487)
|||+|+..|+.+++++|++.+.++....+..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..+
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~--- 236 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRP--- 236 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSS---
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHHHcC---
Confidence 99999999999999999998766554433569999999999999999999999 79999999999999999999999
Q ss_pred hhHHHHHHHHhcCcHhHhhcCCChhHhhhhh
Q 011376 249 ETAELKECLERNGAVRARELNQPRDELRRTV 279 (487)
Q Consensus 249 ~~~~i~~~L~~~g~~~~~~~~~~~~~l~~~~ 279 (487)
+.+++++|+++|++.......+.+++....
T Consensus 237 -~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~ 266 (282)
T 1oy3_D 237 -NPILARLLRAHGAPEPEDGGDKLSPCSSSG 266 (282)
T ss_dssp -CHHHHHHHHHTTCCCCCCC-----------
T ss_pred -CcHHHHHHHHcCCCcCcCCCcccccccccC
Confidence 899999999999988777666776665443
No 31
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2e-35 Score=272.27 Aligned_cols=216 Identities=25% Similarity=0.307 Sum_probs=192.3
Q ss_pred CchhhHHHHHHHhHHHHHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHh
Q 011376 6 SSVDFDAEVVEIRAAVVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLD 85 (487)
Q Consensus 6 ~~~e~~~~ll~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~ 85 (487)
|+.|.++.+++......+..|.+|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4556666666644433444589999999999999999999999995 78889999999999999999999999999999
Q ss_pred hCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCC
Q 011376 86 HYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKK 165 (487)
Q Consensus 86 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~ 165 (487)
+++......+..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|+.+++++|++++.++ +.+|..
T Consensus 80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~ 157 (223)
T 2f8y_A 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNR 157 (223)
T ss_dssp BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence 998555666999999999999999999999999999887 778899999999999999999999999999988 788999
Q ss_pred CChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCc
Q 011376 166 GQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDV 227 (487)
Q Consensus 166 g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~ 227 (487)
|.||||+|++.|+.+++++|++++.+ .+.+|..|.||||+|+..++.+++++|++ +|+..
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~-~g~~~ 217 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDE-YNLVR 217 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCSS
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHH-cCCCc
Confidence 99999999999999999999999654 56779999999999999999999999999 67654
No 32
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=3.3e-36 Score=280.39 Aligned_cols=219 Identities=21% Similarity=0.278 Sum_probs=189.4
Q ss_pred HhccCCCCcHHHHHHHcCCHHHHHHHHHhccc--cccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCc
Q 011376 23 EEVNELGETALFIAAKNGHLDVVKELLQYMTK--EGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNAT 100 (487)
Q Consensus 23 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~--~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t 100 (487)
+.+|.+|.||||+|+..|+.+++++|++.... .+++..|..|.||||+|+..|+.+++++|+++|++++.. |..|.|
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t 80 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNT 80 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCC-CTTCCC
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCC
Confidence 45789999999999999999999999986432 378899999999999999999999999999999998654 899999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCC-----cccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCC-CCChHHHHHH
Q 011376 101 PLITAATKGHVDVLHVLLSKDPHL-----LKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDK-KGQTALHMAV 174 (487)
Q Consensus 101 pL~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~ 174 (487)
|||+|+..|+.+++++|++.++.. .+..+..|.||||+|+..|+.+++++|+++|+++ +..+. .|.||||+|+
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~ 159 (236)
T 1ikn_D 81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAV 159 (236)
T ss_dssp HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHH
Confidence 999999999999999999998642 4667888999999999999999999999999998 66676 9999999999
Q ss_pred hCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCcc--ccccCCCCHHhHHhhCC
Q 011376 175 KGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVN--ILTKDRKTALDIAEGLP 245 (487)
Q Consensus 175 ~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~--~~n~~G~t~L~~A~~~~ 245 (487)
..|+.+++++|++++. ..+.+|..|+||||+|+..++.+++++|++ .|++.. ..+..|.||.+.+....
T Consensus 160 ~~~~~~~v~~Ll~~ga-~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 160 DLQNPDLVSLLLKCGA-DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLENLQMLPESEDEESYDTESEFT 230 (236)
T ss_dssp HTTCHHHHHHHHTTTC-CSCCCCTTCCCGGGGCTTSSCHHHHHHHHT-TSCGGGSSCCCCCTTTCCCCC----
T ss_pred HcCCHHHHHHHHHcCC-CCCcccCCCCCHHHHHHccCchHHHHHHHH-cchhhhhcCCccchHHHHhhhcccc
Confidence 9999999999999854 456789999999999999999999999999 799876 88999999998876543
No 33
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.4e-34 Score=268.42 Aligned_cols=197 Identities=24% Similarity=0.377 Sum_probs=168.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCccc----ccCCCCCCcHHH
Q 011376 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELT----KTLGQSNATPLI 103 (487)
Q Consensus 28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~----~~~~~~g~tpL~ 103 (487)
.|+||||.|+..|+.+++++|++. .+.+++.+|.+|+||||+|+..|+.+++++|+++++++. ...|..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKF-EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTT-TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 589999999999999999999985 378899999999999999999999999999999998864 344778999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCcccCCC-------------CCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHH
Q 011376 104 TAATKGHVDVLHVLLSKDPHLLKIPRS-------------NGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTAL 170 (487)
Q Consensus 104 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~-------------~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 170 (487)
+|+..|+.+++++|+++++++ +..+. .|.||||+|+..|+.+++++|+++|+++ +.+|..|+|||
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L 158 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVL 158 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred HHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHH
Confidence 999999999999999999887 44433 6888999999888889999988888887 77888888899
Q ss_pred HHHHhCCCHHHH----HHHHhCCcccc-----cCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCcc
Q 011376 171 HMAVKGISSEVV----RLLLGADSAIA-----MLPDKFGNTALHVATRKKRIEIVNELLALSDIDVN 228 (487)
Q Consensus 171 h~A~~~~~~e~v----~~Ll~~~~~~~-----~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~ 228 (487)
|+|+..++.+++ ++|++.+++.. +.+|..|+||||+|+..|+.+++++|++ +|.+..
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~-~g~~~~ 224 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ-KRKHIA 224 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHHC-
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCccch
Confidence 998888888877 88888766543 5678888888888888888888888888 555443
No 34
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.4e-33 Score=262.47 Aligned_cols=216 Identities=23% Similarity=0.314 Sum_probs=197.1
Q ss_pred ccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcH
Q 011376 56 GVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNA 135 (487)
Q Consensus 56 ~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp 135 (487)
+++.+|.+|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|++.++++ +..+..|.||
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~ 80 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC-SEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTC 80 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCcc-CCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcH
Confidence 56788999999999999999999999999999998654 889999999999999999999999999887 7788999999
Q ss_pred HHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHH
Q 011376 136 LHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEI 215 (487)
Q Consensus 136 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~i 215 (487)
||+|+..|+.+++++|++.++...+..+..|.||||+|+..++.+++++|++.+.+ .+.+|..|+||||+|+..|+.++
T Consensus 81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHH
Confidence 99999999999999999999554488899999999999999999999999998654 56679999999999999999999
Q ss_pred HHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcCcHhHhhcCCChhHhhhhh
Q 011376 216 VNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNGAVRARELNQPRDELRRTV 279 (487)
Q Consensus 216 v~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~l~~~~ 279 (487)
+++|++ .|++++.+|..|.||||+|+..+ ..+++++|.++|++.......+.+++....
T Consensus 160 ~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~----~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~ 218 (237)
T 3b7b_A 160 AEILLA-AKCDLHAVNIHGDSPLHIAAREN----RYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218 (237)
T ss_dssp HHHHHT-TTCCTTCCCTTCCCHHHHHHHTT----CHHHHHHHHTTTCCTTCCCTTSCCHHHHSC
T ss_pred HHHHHH-cCCCCCCcCCCCCCHHHHHHHhC----CHhHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 999999 89999999999999999999999 889999999999987766666777765543
No 35
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=6.5e-34 Score=265.20 Aligned_cols=221 Identities=26% Similarity=0.283 Sum_probs=192.0
Q ss_pred ccCCCCCCcHHHHHHHcCcHHHHHHHHh----hCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCC
Q 011376 58 SLKSNSGLDPLHIAASQGYQDIVQVLLD----HYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGK 133 (487)
Q Consensus 58 ~~~~~~g~tpLh~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~ 133 (487)
+.+|.+|+||||+|+..|+.+++++|++ .+.+++. .|..|.||||+|+..|+.+++++|++.++++ +..+..|.
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~ 80 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI-YNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQ 80 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-ccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCC
Confidence 5678999999999999999999999997 5666644 4899999999999999999999999999887 77789999
Q ss_pred cHHHHHHHcCCHHHHHHHhhcCC----ccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHh
Q 011376 134 NALHLAARQGHVDVVKHILKKDT----QLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATR 209 (487)
Q Consensus 134 tpLh~A~~~g~~~~v~~Ll~~~~----~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~ 209 (487)
||||+|+..|+.+++++|++.++ ++ +..|..|.||||+|+..|+.+++++|++.+.+.....+..|+||||+|+.
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence 99999999999999999999987 44 77889999999999999999999999999766554433889999999999
Q ss_pred cCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcCcHhHhhcCCChhHhhhhhhhhhhhh
Q 011376 210 KKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNGAVRARELNQPRDELRRTVKEIKQHV 286 (487)
Q Consensus 210 ~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (487)
.|+.+++++|++ .|++++.+|..|+||||+|+..+ ..+++++|+++|++.......+.+++.........++
T Consensus 160 ~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~----~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i 231 (241)
T 1k1a_A 160 NNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRG----LLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 231 (241)
T ss_dssp TTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHT----CHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHH
T ss_pred cCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcC----CHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHH
Confidence 999999999999 79999999999999999999998 8899999999999877666666677665554433333
No 36
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.3e-33 Score=259.37 Aligned_cols=209 Identities=25% Similarity=0.251 Sum_probs=188.5
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcC--CCCcccCCCCCCcHHHHHHH
Q 011376 64 GLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKD--PHLLKIPRSNGKNALHLAAR 141 (487)
Q Consensus 64 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~g~tpLh~A~~ 141 (487)
|+||||.|+..|+.++++.|++.+++.....|..|.||||+|+..|+.+++++|++.+ .++....+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 7899999999999999999999999988878999999999999999999999999998 55533378899999999999
Q ss_pred cCCHHHHHHHhhcC--CccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHH
Q 011376 142 QGHVDVVKHILKKD--TQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNEL 219 (487)
Q Consensus 142 ~g~~~~v~~Ll~~~--~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~L 219 (487)
.|+.+++++|++++ +++ +..+..|.||||+|+..|+.+++++|++.+. ..+.+|..|+||||+|+..|+.+++++|
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~L 159 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGA-SVRIKDKFNQIPLHRAASVGSLKLIELL 159 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCC-CccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999998 666 7788999999999999999999999999854 4567899999999999999999999999
Q ss_pred hccCC-cCccccccCCCCHHhHHhhCCCChhhHHHHHHHH-hcCcHhHhhcCCChhHhhhhh
Q 011376 220 LALSD-IDVNILTKDRKTALDIAEGLPFSEETAELKECLE-RNGAVRARELNQPRDELRRTV 279 (487)
Q Consensus 220 l~~~g-~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~-~~g~~~~~~~~~~~~~l~~~~ 279 (487)
++ .| ++++.+|..|+||||+|+..+ +.+++++|+ +.|++.......+.+++....
T Consensus 160 l~-~g~~~~~~~d~~g~t~L~~A~~~~----~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~ 216 (228)
T 2dzn_A 160 CG-LGKSAVNWQDKQGWTPLFHALAEG----HGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216 (228)
T ss_dssp HT-TTCCCSCCCCTTSCCHHHHHHHTT----CHHHHHHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred Hh-cCcccccCcCCCCCCHHHHHHHcC----CHHHHHHHHHhcCCCCCccCCCCCcHHHHHH
Confidence 99 56 999999999999999999999 889999999 889887766666666665543
No 37
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=273.33 Aligned_cols=204 Identities=25% Similarity=0.327 Sum_probs=159.6
Q ss_pred CCCCchhhHHHHHHHhHH-------HHHhccCCCCcHHHHHHHcCCHH-HHHHHHHhccccccccCCCCCCcHHHHHHHc
Q 011376 3 GTTSSVDFDAEVVEIRAA-------VVEEVNELGETALFIAAKNGHLD-VVKELLQYMTKEGVSLKSNSGLDPLHIAASQ 74 (487)
Q Consensus 3 a~~~~~e~~~~ll~~~~~-------~~~~~~~~g~T~Lh~Aa~~g~~~-~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~ 74 (487)
+..|+.|.++.+|+.... .++..|..|.||||.|+..++.+ +++.|++. +.+++.+|.+|+||||+|+..
T Consensus 19 ~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~--Gadvn~~d~~G~TpLh~A~~~ 96 (269)
T 4b93_B 19 VADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS--GLGVNVTSQDGSSPLHVAALH 96 (269)
T ss_dssp HHTTCHHHHHHHHTCC----------------------------------------C--CCCTTCCCTTSCCHHHHHHHT
T ss_pred HHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHc
Confidence 557889999999975543 36677889999999999988765 78888884 889999999999999999999
Q ss_pred CcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhc
Q 011376 75 GYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKK 154 (487)
Q Consensus 75 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ 154 (487)
|+.+++++|++.++++... +..|.||+|.|+..++.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|+++
T Consensus 97 g~~~~v~~Ll~~~a~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ 174 (269)
T 4b93_B 97 GRADLIPLLLKHGANAGAR-NADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQH 174 (269)
T ss_dssp TCTTHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHT
T ss_pred CcHHHHHHHHhcCCCcCcc-CCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence 9999999999999998655 899999999999999999999999999987 78899999999999999999999999999
Q ss_pred CCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCc
Q 011376 155 DTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKR 212 (487)
Q Consensus 155 ~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~ 212 (487)
|+++ +..+..|.||||+|+.+|+.+++++|++++. ..+.+|.+|+||||+|+++++
T Consensus 175 gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga-d~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 175 GASI-NASNNKGNTALHEAVIEKHVFVVELLLLHGA-SVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp TCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC-CSCCCCTTSCCSGGGSCTTCH
T ss_pred CCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHhCCc
Confidence 9998 8899999999999999999999999999865 457789999999999998775
No 38
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=6.7e-34 Score=272.64 Aligned_cols=216 Identities=19% Similarity=0.130 Sum_probs=193.3
Q ss_pred HHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHH
Q 011376 37 AKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHV 116 (487)
Q Consensus 37 a~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 116 (487)
+...+.+.+..++.. + +++.+|.+|.||||+|+..|+.+++++|+++|++++.. +|.||||+|+..|+.+++++
T Consensus 7 i~~~~~~~v~~lL~~--~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~ 80 (285)
T 3kea_A 7 INTWKSKQLKSFLSS--K-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKI 80 (285)
T ss_dssp GGGCCHHHHHHHHHS--T-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHH
T ss_pred HHhcCHHHHHHHHHh--C-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHH
Confidence 345566666666653 2 57899999999999999999999999999999987654 58999999999999999999
Q ss_pred HHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCC-ChHHHHHHhCCCHHHHHHHHhCCcccccC
Q 011376 117 LLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKG-QTALHMAVKGISSEVVRLLLGADSAIAML 195 (487)
Q Consensus 117 Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g-~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~ 195 (487)
|+++++++ +..|..|.||||+|+..|+.+++++|+++|+++ +..+..| .||||+|+..|+.+++++|++.++....
T Consensus 81 Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~- 157 (285)
T 3kea_A 81 LLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD- 157 (285)
T ss_dssp HHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC-
T ss_pred HHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc-
Confidence 99999997 778899999999999999999999999999998 7888888 8999999999999999999999766532
Q ss_pred cCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCH-HhHHhhCCCChhhHHHHHHHHhcCcHhHhh
Q 011376 196 PDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTA-LDIAEGLPFSEETAELKECLERNGAVRARE 267 (487)
Q Consensus 196 ~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~-L~~A~~~~~~~~~~~i~~~L~~~g~~~~~~ 267 (487)
...|+||||+|+..|+.+++++|++ .|++++.+|..|+|| ||+|+..+ ..+++++|+++|++....
T Consensus 158 -~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~~L~~A~~~~----~~~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 158 -LAILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNK----DIEMLQALFKYDINIYSA 224 (285)
T ss_dssp -CSTHHHHHHHHHHTTCHHHHHHHHH-HHHHTCTTCCCBCCTTHHHHHHHT----CHHHHHHHTTSCBCSTTT
T ss_pred -ccCCccHHHHHHHcChHHHHHHHHH-cCCCCCcccCCCCChHHHHHHHcC----CHHHHHHHHHcCCCCCCC
Confidence 2289999999999999999999999 799999999999998 99999998 899999999999876544
No 39
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2.2e-34 Score=274.14 Aligned_cols=217 Identities=18% Similarity=0.257 Sum_probs=159.9
Q ss_pred HHHHHhccCCCCcHHHHHHHcCCHHHHHHHHHhcc--ccccc----cCCCCCCcHHHHHHHc---CcHHHHHHHHhhCCc
Q 011376 19 AAVVEEVNELGETALFIAAKNGHLDVVKELLQYMT--KEGVS----LKSNSGLDPLHIAASQ---GYQDIVQVLLDHYPE 89 (487)
Q Consensus 19 ~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~--~~~~~----~~~~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~ 89 (487)
++..+..|..|.||||.|+..|+.++|+.|++.+. +.+++ ..|..|.||||+|+.. |+.+++++|+++|++
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~ 82 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK 82 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence 45567789999999999999999999999998532 33333 3578999999999987 999999999999865
Q ss_pred cc-------c---cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCC--------------CCCcHHHHHHHcCCH
Q 011376 90 LT-------K---TLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRS--------------NGKNALHLAARQGHV 145 (487)
Q Consensus 90 ~~-------~---~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--------------~g~tpLh~A~~~g~~ 145 (487)
.. . ..|..|.||||+|+..|+.+++++|+++++++ +..+. .|.||||+|+..|+.
T Consensus 83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~ 161 (273)
T 2pnn_A 83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161 (273)
T ss_dssp TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH
T ss_pred ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCH
Confidence 31 1 14668999999999999999999999998887 55554 688888888888888
Q ss_pred HHHHHHhh---cCCccccccCCCCChHHHHHHhCCC---------HHHHHHHHhCCcccc------cCcCCCCCcHHHHH
Q 011376 146 DVVKHILK---KDTQLARHTDKKGQTALHMAVKGIS---------SEVVRLLLGADSAIA------MLPDKFGNTALHVA 207 (487)
Q Consensus 146 ~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~e~v~~Ll~~~~~~~------~~~d~~g~T~Lh~A 207 (487)
+++++|++ .|.++ +.+|.+|+||||+|+..|+ .+++++|++.+.+.. +.+|..|+||||+|
T Consensus 162 ~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A 240 (273)
T 2pnn_A 162 AIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240 (273)
T ss_dssp HHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred HHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence 88888888 77777 7778888888888888777 788888887765543 35788888888888
Q ss_pred HhcCcHHHHHHHhccCCc-CccccccCCCCHH
Q 011376 208 TRKKRIEIVNELLALSDI-DVNILTKDRKTAL 238 (487)
Q Consensus 208 ~~~~~~~iv~~Ll~~~g~-d~~~~n~~G~t~L 238 (487)
+..|+.+++++|++ +|+ |+......+.+|-
T Consensus 241 ~~~g~~~iv~~Ll~-~ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 241 ASSGKIGVLAYILQ-REIHEPECRHAAAHHHH 271 (273)
T ss_dssp HHTTCHHHHHHHHH-HHTC-------------
T ss_pred HHhChHHHHHHHHH-CCCCCchhhhhhhhhcc
Confidence 88888888888888 566 7777666666553
No 40
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=8.8e-34 Score=273.37 Aligned_cols=244 Identities=21% Similarity=0.214 Sum_probs=207.7
Q ss_pred HHHHcCCHHHHHHHHHhcccccc-------ccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHH
Q 011376 35 IAAKNGHLDVVKELLQYMTKEGV-------SLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAAT 107 (487)
Q Consensus 35 ~Aa~~g~~~~v~~Ll~~~~~~~~-------~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 107 (487)
.++..|+.+.++.++........ ...+.+|.||||.||..|+.+++++|+++|++++.. |..|.||||+|+.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~ 82 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACI 82 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCB-CTTCCBHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHH
Confidence 56778888888888875322111 112346789999999999999999999999998655 8999999999999
Q ss_pred cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHh
Q 011376 108 KGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLG 187 (487)
Q Consensus 108 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~ 187 (487)
.|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..++.++++.++.
T Consensus 83 ~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~ 160 (299)
T 1s70_B 83 DDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVN 160 (299)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence 99999999999999987 778899999999999999999999999999998 7889999999999999999999988775
Q ss_pred CCcc--------------------------cccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHH
Q 011376 188 ADSA--------------------------IAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIA 241 (487)
Q Consensus 188 ~~~~--------------------------~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A 241 (487)
..+. .....+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A 239 (299)
T 1s70_B 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAA 239 (299)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHH
T ss_pred hcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHH
Confidence 3222 222356789999999999999999999999 8999999999999999999
Q ss_pred hhCCCChhhHHHHHHHHhcCcHhHhhcCCChhHhhhhhhhhhhhh
Q 011376 242 EGLPFSEETAELKECLERNGAVRARELNQPRDELRRTVKEIKQHV 286 (487)
Q Consensus 242 ~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (487)
+..+ +.+++++|+++|++.......+.+++....++..+.+
T Consensus 240 ~~~~----~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l 280 (299)
T 1s70_B 240 AHWG----KEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYL 280 (299)
T ss_dssp HHTT----CHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHH
T ss_pred HhcC----CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHH
Confidence 9999 8899999999999887777777777776655444433
No 41
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.2e-32 Score=249.48 Aligned_cols=193 Identities=28% Similarity=0.344 Sum_probs=162.5
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHH
Q 011376 26 NELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITA 105 (487)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 105 (487)
+..+.||||.|+..|+.+.++.|+.. .+.+++..|.+|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A 79 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQD-TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYA 79 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTC-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHH
Confidence 46788999999999999999999986 35578888999999999999999999999999999887654 88899999999
Q ss_pred HHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCC-----HH
Q 011376 106 ATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGIS-----SE 180 (487)
Q Consensus 106 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~e 180 (487)
+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|+++++...+.+|..|.||||+|+..++ .+
T Consensus 80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence 9999999999999655544477888899999999999999999999998833337788888999999988887 88
Q ss_pred HHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhc
Q 011376 181 VVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLA 221 (487)
Q Consensus 181 ~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~ 221 (487)
++++|++.+.+ .+.+|..|+||||+|+..|+.+++++|++
T Consensus 160 ~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 160 IVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence 88888888544 45678888888888888888888888887
No 42
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.9e-32 Score=248.18 Aligned_cols=195 Identities=22% Similarity=0.271 Sum_probs=178.9
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHH
Q 011376 61 SNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAA 140 (487)
Q Consensus 61 ~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~ 140 (487)
+..+.||||.|+..|+.++++.|++.++......|..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAG 80 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence 3468899999999999999999999988444556899999999999999999999999999987 778899999999999
Q ss_pred HcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCc-----HHH
Q 011376 141 RQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKR-----IEI 215 (487)
Q Consensus 141 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~-----~~i 215 (487)
..|+.+++++|++.+....+..|..|.||||+|+..|+.+++++|++.++...+.+|..|+||||+|+..++ .++
T Consensus 81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence 999999999999665544488899999999999999999999999999867788899999999999999887 999
Q ss_pred HHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcC
Q 011376 216 VNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNG 261 (487)
Q Consensus 216 v~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g 261 (487)
+++|++ .|++++.+|..|+||||+|+..+ +.+++++|.++|
T Consensus 161 v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~----~~~~~~~Ll~~G 201 (201)
T 3hra_A 161 VKLLME-NGADQSIKDNSGRTAMDYANQKG----YTEISKILAQYN 201 (201)
T ss_dssp HHHHHH-TTCCTTCCCTTSCCHHHHHHHHT----CHHHHHHHHTCC
T ss_pred HHHHHH-CCCCCCccCCCCCCHHHHHHHcC----CHhHHHHHHhcC
Confidence 999999 79999999999999999999999 889999998875
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.7e-33 Score=262.06 Aligned_cols=204 Identities=22% Similarity=0.269 Sum_probs=177.7
Q ss_pred ccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCc---ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCc
Q 011376 58 SLKSNSGLDPLHIAASQGYQDIVQVLLDHYPE---LTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKN 134 (487)
Q Consensus 58 ~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~---~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t 134 (487)
+..|.+|.||||+|+..|+.+++++|++.++. .....|..|.||||+|+..|+.+++++|+++++++ +..+..|.|
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t 80 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNT 80 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCC
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCC
Confidence 34688999999999999999999999998763 23455889999999999999999999999999887 778899999
Q ss_pred HHHHHHHcCCHHHHHHHhhcCCcc-----ccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCC-CCCcHHHHHH
Q 011376 135 ALHLAARQGHVDVVKHILKKDTQL-----ARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDK-FGNTALHVAT 208 (487)
Q Consensus 135 pLh~A~~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~-~g~T~Lh~A~ 208 (487)
|||+|+..|+.+++++|++.+++. .+..+..|.||||+|+..|+.+++++|++.+.++ +.+|. .|+||||+|+
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~ 159 (236)
T 1ikn_D 81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAV 159 (236)
T ss_dssp HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHH
Confidence 999999999999999999998642 3677889999999999999999999999986554 45566 9999999999
Q ss_pred hcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcCcHhHhhc
Q 011376 209 RKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNGAVRAREL 268 (487)
Q Consensus 209 ~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~~~~~~~ 268 (487)
..|+.+++++|++ .|++++.+|..|+||||+|+..+ ..+++++|+++|++.....
T Consensus 160 ~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~----~~~~~~~Ll~~ga~~~~~~ 214 (236)
T 1ikn_D 160 DLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRP----STRIQQQLGQLTLENLQML 214 (236)
T ss_dssp HTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSS----CHHHHHHHHTTSCGGGSSC
T ss_pred HcCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccC----chHHHHHHHHcchhhhhcC
Confidence 9999999999999 79999999999999999999999 8999999999999765433
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.7e-32 Score=254.29 Aligned_cols=196 Identities=24% Similarity=0.257 Sum_probs=174.7
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhh-CCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCc----ccCCCCCCcHHH
Q 011376 63 SGLDPLHIAASQGYQDIVQVLLDH-YPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLL----KIPRSNGKNALH 137 (487)
Q Consensus 63 ~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~----~~~~~~g~tpLh 137 (487)
.|+||||.|+..|+.+++++|++. |.+++.. |..|+||||+|+..|+.+++++|++.+++.. +..|.+|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 589999999999999999999998 7776554 9999999999999999999999999988753 345678999999
Q ss_pred HHHHcCCHHHHHHHhhcCCccccccCC-------------CCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHH
Q 011376 138 LAARQGHVDVVKHILKKDTQLARHTDK-------------KGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTAL 204 (487)
Q Consensus 138 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~-------------~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~L 204 (487)
+|+..|+.+++++|+++++++ +..+. .|.||||+|+..|+.+++++|++++. ..+.+|..|+|||
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~d~~g~t~L 158 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA-DIRAQDSLGNTVL 158 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHH
T ss_pred HHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHH
Confidence 999999999999999999987 44443 79999999999999999999999854 4567899999999
Q ss_pred HHHHhcCcHHHH----HHHhccCCcCc------cccccCCCCHHhHHhhCCCChhhHHHHHHHHhcCcHhHh
Q 011376 205 HVATRKKRIEIV----NELLALSDIDV------NILTKDRKTALDIAEGLPFSEETAELKECLERNGAVRAR 266 (487)
Q Consensus 205 h~A~~~~~~~iv----~~Ll~~~g~d~------~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~~~~~ 266 (487)
|+|+..++.+++ ++|++ .|+++ +.+|..|+||||+|+..+ +.+++++|+++|.....
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~~~~~~~g~tpl~~A~~~g----~~~~v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLS-YDGGDHLKSLELVPNNQGLTPFKLAGVEG----NIVMFQHLMQKRKHIAA 225 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHH-TTCSCSSCCGGGCCCTTSCCHHHHHHHHT----CHHHHHHHHHHHHHC--
T ss_pred HHHHHcCChHHHHHHHHHHHh-cCCchhhhhhhccCCCCCCCHHHHHHHcC----CHHHHHHHHhcCccchh
Confidence 999999999988 99998 78887 689999999999999999 89999999998876443
No 45
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-33 Score=275.42 Aligned_cols=226 Identities=17% Similarity=0.176 Sum_probs=176.0
Q ss_pred CCchhhHHHHHHHhHHHHHh-----------------ccCCCCcHHHHHHHcCCHHHHHHHHHhcccccccc-CCCCCCc
Q 011376 5 TSSVDFDAEVVEIRAAVVEE-----------------VNELGETALFIAAKNGHLDVVKELLQYMTKEGVSL-KSNSGLD 66 (487)
Q Consensus 5 ~~~~e~~~~ll~~~~~~~~~-----------------~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-~~~~g~t 66 (487)
.++.+.++.+++. +.+.+. ......+.+|.|+..+..++++.|++. +.+++. +|.+|+|
T Consensus 57 ~g~~~~v~~Ll~~-g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~--g~dvn~~~d~~g~T 133 (327)
T 1sw6_A 57 NEQKMKLEAFLQR-LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT--QLNLNIPVDEHGNT 133 (327)
T ss_dssp HHHHHHHHHHHHH-HHC-------------------------------CHHHHHHHHHHHCTTS--CCCSCSCCSTTCCC
T ss_pred CchhHHHHHHHHh-ccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhc--CCCcccccCCCCCc
Confidence 3667788888874 444333 111122335788888888888888874 788999 8999999
Q ss_pred HHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCC---HHHHHHHHhcCCCCcccCCCCCCcHHHHHHH--
Q 011376 67 PLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGH---VDVLHVLLSKDPHLLKIPRSNGKNALHLAAR-- 141 (487)
Q Consensus 67 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~-- 141 (487)
|||+|+..|+.+++++|+++|++++.. |..|+||||+|+..|+ .++++.|++.+....+..|..|+||||+|+.
T Consensus 134 pLh~Aa~~g~~~~v~~Ll~~Gad~n~~-d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~ 212 (327)
T 1sw6_A 134 PLHWLTSIANLELVKHLVKHGSNRLYG-DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITS 212 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTBC-CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHc
Confidence 999999999999999999999998754 9999999999999998 6777888877643347889999999999999
Q ss_pred --cCCHHHHHHHhhc--------------------CCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCC
Q 011376 142 --QGHVDVVKHILKK--------------------DTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKF 199 (487)
Q Consensus 142 --~g~~~~v~~Ll~~--------------------~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~ 199 (487)
.|+.++++.|++. +.++ +..+..|.||||.|+. +++|++. ..+.+|..
T Consensus 213 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~ 282 (327)
T 1sw6_A 213 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNGERKDSILENLD------LKWIIAN---MLNAQDSN 282 (327)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHH---TTTCCCTT
T ss_pred cccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccccccCCChhHHHHH------HHHHHHh---CCCCCCCC
Confidence 8999999999987 5666 7788999999999996 8888887 36778999
Q ss_pred CCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCC
Q 011376 200 GNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLP 245 (487)
Q Consensus 200 g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~ 245 (487)
|+||||+|+..|+.+++++|++ .|+|++.+|..|+||||+|+..|
T Consensus 283 G~TpLh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 283 GDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp SCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTCC--
T ss_pred CCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcC
Confidence 9999999999999999999999 79999999999999999998653
No 46
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=255.14 Aligned_cols=217 Identities=26% Similarity=0.281 Sum_probs=191.7
Q ss_pred CCCCchhhHHHHHHHhHHHHHhccCCCCcHHHHHHHcCCHHHHHHHHHhcccccccc-CCCCCCcHHHHHHHcCcHHHHH
Q 011376 3 GTTSSVDFDAEVVEIRAAVVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSL-KSNSGLDPLHIAASQGYQDIVQ 81 (487)
Q Consensus 3 a~~~~~e~~~~ll~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-~~~~g~tpLh~A~~~g~~~iv~ 81 (487)
+..++.+.++.+++ .+.+++.+|..|.||||.|+..|+.+++++|++. +.+++. .+..|.||||+|+..|+.++++
T Consensus 17 ~~~g~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~t~L~~A~~~~~~~~v~ 93 (240)
T 3eu9_A 17 TQYGIYERCRELVE-AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK--GAIVDQLGGDLNSTPLHWATRQGHLSMVV 93 (240)
T ss_dssp HHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBTTTTBCHHHHHHHHTCHHHHH
T ss_pred HHcCChHHHHHHHH-cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc--CCcchhhcCCcCCChhHHHHHcCCHHHHH
Confidence 45688999999888 5688999999999999999999999999999996 455443 4455999999999999999999
Q ss_pred HHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCC-HHHHHHHhhcCCcccc
Q 011376 82 VLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGH-VDVVKHILKKDTQLAR 160 (487)
Q Consensus 82 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~-~~~v~~Ll~~~~~~~~ 160 (487)
+|++.|+++... +..|.||||.|+..|+.+++++|++.++++ +..+..|.||||.|+..++ .+++++|++.+.++ +
T Consensus 94 ~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~-~ 170 (240)
T 3eu9_A 94 QLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV-N 170 (240)
T ss_dssp HHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCT-T
T ss_pred HHHHcCCCCccc-CCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCc-c
Confidence 999999988654 899999999999999999999999999887 7788999999999997666 89999999999998 5
Q ss_pred ccCC-CCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCc
Q 011376 161 HTDK-KGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDV 227 (487)
Q Consensus 161 ~~d~-~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~ 227 (487)
..+. .|.||||+|+.+|+.+++++|++++ ...+.+|..|+||||+|+..|+.+++++|++ .+.+.
T Consensus 171 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~-~~~~~ 236 (240)
T 3eu9_A 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNVWMINHLQE-ARQAK 236 (240)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-HC---
T ss_pred hhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-hhhcc
Confidence 5554 8999999999999999999999986 4456789999999999999999999999998 55544
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=3.8e-33 Score=262.92 Aligned_cols=190 Identities=23% Similarity=0.276 Sum_probs=119.0
Q ss_pred CCCcHHHHHHHcCCHH----HHHHHHHhcccccccc----CCCCCCcHHHHHHHc---CcHHHHHHHHhhCCccccc---
Q 011376 28 LGETALFIAAKNGHLD----VVKELLQYMTKEGVSL----KSNSGLDPLHIAASQ---GYQDIVQVLLDHYPELTKT--- 93 (487)
Q Consensus 28 ~g~T~Lh~Aa~~g~~~----~v~~Ll~~~~~~~~~~----~~~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~--- 93 (487)
.|.||||.|+..|+.+ ++++|++. +.+++. .|.+|+||||+|+.. |+.+++++|+++|++....
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~--g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 78 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWN--SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHc--CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence 4789999999999997 45555553 677787 789999999999999 9999999999998776422
Q ss_pred -------CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCC-------------CCcHHHHHHHcCCHHHHHHHhh
Q 011376 94 -------LGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSN-------------GKNALHLAARQGHVDVVKHILK 153 (487)
Q Consensus 94 -------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------------g~tpLh~A~~~g~~~~v~~Ll~ 153 (487)
.|..|.||||+|+..|+.+++++|++.++++ +..+.. |.||||+|+..|+.+++++|++
T Consensus 79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 2356778888888888888888888877776 444444 4455555555555555555554
Q ss_pred ---cCCccccccCCCCChHHHHHHh--CCCHH-------HHHHHHhCCcccc------cCcCCCCCcHHHHHHhcCcHHH
Q 011376 154 ---KDTQLARHTDKKGQTALHMAVK--GISSE-------VVRLLLGADSAIA------MLPDKFGNTALHVATRKKRIEI 215 (487)
Q Consensus 154 ---~~~~~~~~~d~~g~t~Lh~A~~--~~~~e-------~v~~Ll~~~~~~~------~~~d~~g~T~Lh~A~~~~~~~i 215 (487)
+|.++ +.+|..|+||||+|+. +++.+ ++++|++++.+.. +.+|..|+||||+|+..|+.++
T Consensus 158 ~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~ 236 (256)
T 2etb_A 158 NPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI 236 (256)
T ss_dssp CSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred ccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHH
Confidence 44443 4444444444444444 44444 4444444432221 3334444444444444444444
Q ss_pred HHHHhc
Q 011376 216 VNELLA 221 (487)
Q Consensus 216 v~~Ll~ 221 (487)
+++|++
T Consensus 237 v~~Ll~ 242 (256)
T 2etb_A 237 FRHILQ 242 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444444
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.98 E-value=2.5e-32 Score=257.32 Aligned_cols=200 Identities=23% Similarity=0.228 Sum_probs=176.6
Q ss_pred CCCcHHHHHHHcCcHH----HHHHHHhhCCcccc---cCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCCcc------
Q 011376 63 SGLDPLHIAASQGYQD----IVQVLLDHYPELTK---TLGQSNATPLITAATK---GHVDVLHVLLSKDPHLLK------ 126 (487)
Q Consensus 63 ~g~tpLh~A~~~g~~~----iv~~Ll~~~~~~~~---~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~------ 126 (487)
.|+||||.|+..|+.+ ++++|+++|.+++. ..|..|.||||+|+.. |+.+++++|++.+++...
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 3789999999999997 66778889998876 3589999999999999 999999999998766521
Q ss_pred ----cCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCC-------------CChHHHHHHhCCCHHHHHHHHhC-
Q 011376 127 ----IPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKK-------------GQTALHMAVKGISSEVVRLLLGA- 188 (487)
Q Consensus 127 ----~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-------------g~t~Lh~A~~~~~~e~v~~Ll~~- 188 (487)
..|..|.||||+|+..|+.+++++|+++|+++ +..+.. |.||||+|+..|+.+++++|++.
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~ 159 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 23467999999999999999999999999998 666665 99999999999999999999993
Q ss_pred -CcccccCcCCCCCcHHHHHHh--cCcHH-------HHHHHhccCCcCc-------cccccCCCCHHhHHhhCCCChhhH
Q 011376 189 -DSAIAMLPDKFGNTALHVATR--KKRIE-------IVNELLALSDIDV-------NILTKDRKTALDIAEGLPFSEETA 251 (487)
Q Consensus 189 -~~~~~~~~d~~g~T~Lh~A~~--~~~~~-------iv~~Ll~~~g~d~-------~~~n~~G~t~L~~A~~~~~~~~~~ 251 (487)
.+...+.+|..|+||||+|+. .++.+ ++++|++ .|+++ +.+|..|+||||+|+..+ +.
T Consensus 160 ~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g----~~ 234 (256)
T 2etb_A 160 HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQLEEISNHQGLTPLKLAAKEG----KI 234 (256)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCCGGGCCCTTSCCHHHHHHHTT----CH
T ss_pred ccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCcccccccccccCCCCCCHHHHHHHhC----CH
Confidence 355667789999999999999 78888 9999999 79999 999999999999999999 89
Q ss_pred HHHHHHHhcCcHhHhhc
Q 011376 252 ELKECLERNGAVRAREL 268 (487)
Q Consensus 252 ~i~~~L~~~g~~~~~~~ 268 (487)
+++++|+++|.......
T Consensus 235 ~~v~~Ll~~g~~~~~~~ 251 (256)
T 2etb_A 235 EIFRHILQREFSGAAAH 251 (256)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCcc
Confidence 99999999988765443
No 49
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=6.9e-31 Score=230.90 Aligned_cols=157 Identities=33% Similarity=0.525 Sum_probs=111.9
Q ss_pred cHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCC
Q 011376 31 TALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGH 110 (487)
Q Consensus 31 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 110 (487)
++|+.||+.|+.++|+.|++. +.+++.+|.+|+||||+|+..++.+++++|+++|++++.. |.+|+||||+|+..|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~-d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhh-ccCCCCHHHHHHHcCC
Confidence 357777777777777777774 6777777777777777777777777777777777776544 7777777777777777
Q ss_pred HHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCc
Q 011376 111 VDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADS 190 (487)
Q Consensus 111 ~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~ 190 (487)
.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+++|+.+++++|+++|+
T Consensus 83 ~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA 160 (169)
T 4gpm_A 83 KEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160 (169)
T ss_dssp HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred HHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 77777777777766 666677777777777777777777777777766 5666666777777776666666666666655
Q ss_pred cc
Q 011376 191 AI 192 (487)
Q Consensus 191 ~~ 192 (487)
++
T Consensus 161 ~i 162 (169)
T 4gpm_A 161 WL 162 (169)
T ss_dssp --
T ss_pred Cc
Confidence 43
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=5.1e-32 Score=257.75 Aligned_cols=203 Identities=20% Similarity=0.220 Sum_probs=171.8
Q ss_pred cccccCCCCCCcHHHHHHHcCcHHHHHHHHhh----CCcccc---cCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCC
Q 011376 55 EGVSLKSNSGLDPLHIAASQGYQDIVQVLLDH----YPELTK---TLGQSNATPLITAATK---GHVDVLHVLLSKDPHL 124 (487)
Q Consensus 55 ~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~----~~~~~~---~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~ 124 (487)
...+..|..|+||||.|+..|+.++++.|++. +.+++. ..|..|.||||+|+.. |+.+++++|++.+++.
T Consensus 4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~ 83 (273)
T 2pnn_A 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83 (273)
T ss_dssp -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence 34456788999999999999999999998874 444332 3578999999999987 9999999999987542
Q ss_pred c----------ccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCC--------------CCChHHHHHHhCCCHH
Q 011376 125 L----------KIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDK--------------KGQTALHMAVKGISSE 180 (487)
Q Consensus 125 ~----------~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~--------------~g~t~Lh~A~~~~~~e 180 (487)
. ...|..|.||||+|+..|+.+++++|+++|+++ +..+. .|.||||+|+..|+.+
T Consensus 84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 162 (273)
T 2pnn_A 84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162 (273)
T ss_dssp TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence 1 125668999999999999999999999999998 66665 7999999999999999
Q ss_pred HHHHHHhC--CcccccCcCCCCCcHHHHHHhcCc---------HHHHHHHhccCCcCcc-------ccccCCCCHHhHHh
Q 011376 181 VVRLLLGA--DSAIAMLPDKFGNTALHVATRKKR---------IEIVNELLALSDIDVN-------ILTKDRKTALDIAE 242 (487)
Q Consensus 181 ~v~~Ll~~--~~~~~~~~d~~g~T~Lh~A~~~~~---------~~iv~~Ll~~~g~d~~-------~~n~~G~t~L~~A~ 242 (487)
++++|++. .+...+.+|..|+||||+|+..++ .+++++|++ .|++++ .+|..|+||||+|+
T Consensus 163 ~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~~~~~~~~d~~g~TpL~~A~ 241 (273)
T 2pnn_A 163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPTLKLEEITNRKGLTPLALAA 241 (273)
T ss_dssp HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred HHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhcccccccccccCCCCCCHHHHHH
Confidence 99999993 355667889999999999999887 799999999 799996 59999999999999
Q ss_pred hCCCChhhHHHHHHHHhcCcH
Q 011376 243 GLPFSEETAELKECLERNGAV 263 (487)
Q Consensus 243 ~~~~~~~~~~i~~~L~~~g~~ 263 (487)
..+ +.+++++|+++|+.
T Consensus 242 ~~g----~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 242 SSG----KIGVLAYILQREIH 258 (273)
T ss_dssp HTT----CHHHHHHHHHHHTC
T ss_pred HhC----hHHHHHHHHHCCCC
Confidence 999 89999999999983
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=1.4e-30 Score=229.01 Aligned_cols=159 Identities=31% Similarity=0.432 Sum_probs=135.3
Q ss_pred cHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCH
Q 011376 66 DPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHV 145 (487)
Q Consensus 66 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~ 145 (487)
++|+.||..|+.++|+.|+++|++++.. |.+|+||||+|+..++.+++++|++.++++ +.+|.+|+||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~-d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence 4789999999999999999999988654 889999999999999999999999998887 77888999999999999999
Q ss_pred HHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCc
Q 011376 146 DVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDI 225 (487)
Q Consensus 146 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~ 225 (487)
+++++|+++|+++ +.+|.+|+||||+|+++|+.+++++|++.+.+ .+.+|.+|+||||+|+..|+.+++++|++ .|+
T Consensus 84 ~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GA 160 (169)
T 4gpm_A 84 EVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLLEK-QGG 160 (169)
T ss_dssp HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHT-C--
T ss_pred HHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHH-CCC
Confidence 9999999999887 78888999999999999999999999988544 55678899999999999999999999998 788
Q ss_pred Cccc
Q 011376 226 DVNI 229 (487)
Q Consensus 226 d~~~ 229 (487)
+++.
T Consensus 161 ~ie~ 164 (169)
T 4gpm_A 161 WLEH 164 (169)
T ss_dssp ----
T ss_pred CcCC
Confidence 8764
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=8.7e-32 Score=254.13 Aligned_cols=194 Identities=23% Similarity=0.306 Sum_probs=115.8
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHhc--cccccccCC----CCCCcHHHHHH---HcCcHHHHHHHHhhCCccc-----
Q 011376 26 NELGETALFIAAKNGHLDVVKELLQYM--TKEGVSLKS----NSGLDPLHIAA---SQGYQDIVQVLLDHYPELT----- 91 (487)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~--~~~~~~~~~----~~g~tpLh~A~---~~g~~~iv~~Ll~~~~~~~----- 91 (487)
|..|.|+||.|++.|+.+.|+.|++.. .+.+++..+ ..|.||||+|+ ..|+.+++++|++.|++..
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 567889999999999999655555510 255555544 67999999999 6799999999999875421
Q ss_pred -----ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCC--------------CCCCcHHHHHHHcCCHHHHHHHh
Q 011376 92 -----KTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPR--------------SNGKNALHLAARQGHVDVVKHIL 152 (487)
Q Consensus 92 -----~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~--------------~~g~tpLh~A~~~g~~~~v~~Ll 152 (487)
...|..|.||||+|+..|+.+++++|++.++++ +..+ ..|.||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 122346677777777777777777777776665 3444 34555555555555555555555
Q ss_pred h---cCCccccccCCCCChHHHHHHhCCC---------HHHHHHHHhCCcccc------cCcCCCCCcHHHHHHhcCcHH
Q 011376 153 K---KDTQLARHTDKKGQTALHMAVKGIS---------SEVVRLLLGADSAIA------MLPDKFGNTALHVATRKKRIE 214 (487)
Q Consensus 153 ~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~e~v~~Ll~~~~~~~------~~~d~~g~T~Lh~A~~~~~~~ 214 (487)
+ +|.++ +.+|..|+||||+|+..++ .+++++|++++.+.. +.+|..|+||||+|+..|+.+
T Consensus 161 ~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~ 239 (260)
T 3jxi_A 161 ENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIG 239 (260)
T ss_dssp HCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred hccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHH
Confidence 5 44444 4444455555555554333 344444444433221 234444444444444444444
Q ss_pred HHHHHhc
Q 011376 215 IVNELLA 221 (487)
Q Consensus 215 iv~~Ll~ 221 (487)
++++|++
T Consensus 240 ~v~~Ll~ 246 (260)
T 3jxi_A 240 IFQHIIR 246 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 53
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=5.5e-31 Score=251.09 Aligned_cols=192 Identities=26% Similarity=0.293 Sum_probs=108.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHH--
Q 011376 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAA-- 106 (487)
Q Consensus 29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~-- 106 (487)
+.+++|.|+..|+.+.++.+++...+..++..|.+|+||||+|+..|+.+++++|++.|+......|..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 345555556666666666555543333355556666666666666666666666666665222333555666666665
Q ss_pred ---HcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHH
Q 011376 107 ---TKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVR 183 (487)
Q Consensus 107 ---~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~ 183 (487)
..++.+++++|++.+... ...+..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.++++
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHH
Confidence 445556666666555443 444555666666666666666666666665555 455555666666666666666666
Q ss_pred HHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhcc
Q 011376 184 LLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLAL 222 (487)
Q Consensus 184 ~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~ 222 (487)
+|++..+...+.+|..|+||||+|+..|+.+++++|+++
T Consensus 234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 666533444445555566666666666666666666554
No 54
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=4.8e-32 Score=264.90 Aligned_cols=248 Identities=13% Similarity=0.064 Sum_probs=194.8
Q ss_pred hhHHHHHHHhHHHHHhccCCCCcHHHHHHHcCCHHHHHHHHHhcccccccc-----------------CCCCCCcHHHHH
Q 011376 9 DFDAEVVEIRAAVVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSL-----------------KSNSGLDPLHIA 71 (487)
Q Consensus 9 e~~~~ll~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-----------------~~~~g~tpLh~A 71 (487)
+++..+++ ++++++..|..|.|+++ |+.++|+.|++. +.+.+. ......+.+|.|
T Consensus 33 dlv~~ll~-~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~--g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a 104 (327)
T 1sw6_A 33 DLTSDFLS-SPLKIMKALPSPVVNDN-----EQKMKLEAFLQR--LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVS 104 (327)
T ss_dssp TCCCSTTT-SSCCCEECBCCCCCCCH-----HHHHHHHHHHHH--HHC-------------------------------C
T ss_pred chHHHHhh-CCcccccCCCCCCcccC-----chhHHHHHHHHh--ccCCccccchHhhhcccccccccccCCccchhHHH
Confidence 44444444 78999999999999988 999999999996 444332 111122345888
Q ss_pred HHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCC---HHHH
Q 011376 72 ASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGH---VDVV 148 (487)
Q Consensus 72 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~---~~~v 148 (487)
+..+..+++++|++.|.+++...|..|.||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+..|+ .+++
T Consensus 105 ~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~ 183 (327)
T 1sw6_A 105 FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTF 183 (327)
T ss_dssp HHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCH
T ss_pred HHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHH
Confidence 88889999999999999998756999999999999999999999999999998 7889999999999999998 6888
Q ss_pred HHHhhcCCccccccCCCCChHHHHHHh----CCCHHHHHHHHhCC-------------------cccccCcCCCCCcHHH
Q 011376 149 KHILKKDTQLARHTDKKGQTALHMAVK----GISSEVVRLLLGAD-------------------SAIAMLPDKFGNTALH 205 (487)
Q Consensus 149 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~~~~e~v~~Ll~~~-------------------~~~~~~~d~~g~T~Lh 205 (487)
+.|++.+....+.+|..|+||||+|+. .|+.+++++|++.+ +...+.+|..|.||||
T Consensus 184 ~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~ 263 (327)
T 1sw6_A 184 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSIL 263 (327)
T ss_dssp HHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHH
T ss_pred HHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhH
Confidence 888888743348899999999999999 99999999998763 4556678999999999
Q ss_pred HHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcCcHhHhhcCCChhHhhhh
Q 011376 206 VATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNGAVRARELNQPRDELRRT 278 (487)
Q Consensus 206 ~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~l~~~ 278 (487)
.|+. +++|++. +++.+|..|+||||+|+..+ +.+++++|+++|++.......+.+++...
T Consensus 264 ~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g----~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A 323 (327)
T 1sw6_A 264 ENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLG----NISIVDALLDYGADPFIANKSGLRPVDFG 323 (327)
T ss_dssp HHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHC----CHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred HHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcC----CHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 9996 8889884 69999999999999999999 88999999999998877766677666543
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=6.6e-31 Score=248.08 Aligned_cols=201 Identities=21% Similarity=0.208 Sum_probs=172.1
Q ss_pred CCCCCcHHHHHHHcCcHHHHH----HHHhhCCccccc---CCCCCCcHHHHHH---HcCCHHHHHHHHhcCCCC------
Q 011376 61 SNSGLDPLHIAASQGYQDIVQ----VLLDHYPELTKT---LGQSNATPLITAA---TKGHVDVLHVLLSKDPHL------ 124 (487)
Q Consensus 61 ~~~g~tpLh~A~~~g~~~iv~----~Ll~~~~~~~~~---~~~~g~tpL~~A~---~~g~~~~v~~Ll~~~~~~------ 124 (487)
+..|+||||.|+..|+.+.++ +|++.+.+++.. .|..|.||||+|+ ..|+.+++++|++.+++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 456889999999999999554 445588887644 2477999999999 679999999999986432
Q ss_pred ----cccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccC--------------CCCChHHHHHHhCCCHHHHHHHH
Q 011376 125 ----LKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTD--------------KKGQTALHMAVKGISSEVVRLLL 186 (487)
Q Consensus 125 ----~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~~~~e~v~~Ll 186 (487)
....|..|.||||+|+..|+.+++++|+++|+++ +..+ ..|.||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 2334558999999999999999999999999998 6666 68999999999999999999999
Q ss_pred hC--CcccccCcCCCCCcHHHHHHhcCc---------HHHHHHHhccCCcCc-------cccccCCCCHHhHHhhCCCCh
Q 011376 187 GA--DSAIAMLPDKFGNTALHVATRKKR---------IEIVNELLALSDIDV-------NILTKDRKTALDIAEGLPFSE 248 (487)
Q Consensus 187 ~~--~~~~~~~~d~~g~T~Lh~A~~~~~---------~~iv~~Ll~~~g~d~-------~~~n~~G~t~L~~A~~~~~~~ 248 (487)
+. .+...+.+|..|+||||+|+..++ .+++++|++ .|+++ +.+|..|+||||+|+..+
T Consensus 161 ~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g--- 236 (260)
T 3jxi_A 161 ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLSPLMMAAKTG--- 236 (260)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTT---
T ss_pred hccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhhcccCCCCCHHHHHHHcC---
Confidence 93 355667889999999999998777 799999999 79998 789999999999999999
Q ss_pred hhHHHHHHHHhcCcHhHhh
Q 011376 249 ETAELKECLERNGAVRARE 267 (487)
Q Consensus 249 ~~~~i~~~L~~~g~~~~~~ 267 (487)
+.+++++|+++|......
T Consensus 237 -~~~~v~~Ll~~g~~~~~~ 254 (260)
T 3jxi_A 237 -KIGIFQHIIRREIADAAA 254 (260)
T ss_dssp -CHHHHHHHHHHHHHHHC-
T ss_pred -CHHHHHHHHHhCCCcccc
Confidence 899999999998876543
No 56
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=1.1e-29 Score=228.41 Aligned_cols=170 Identities=19% Similarity=0.222 Sum_probs=143.1
Q ss_pred HHHHhHHHHHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCccccc
Q 011376 14 VVEIRAAVVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKT 93 (487)
Q Consensus 14 ll~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~ 93 (487)
+-...+.+++.+|..|.||||.|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 20 i~~~~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 97 (192)
T 2rfm_A 20 INQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK 97 (192)
T ss_dssp HHHTHHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC
T ss_pred hhhhhHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence 33344566788888999999999999999999999985 6778888888999999999999999999999988887544
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHH
Q 011376 94 LGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMA 173 (487)
Q Consensus 94 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 173 (487)
|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 98 -~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A 174 (192)
T 2rfm_A 98 -DFSGKTPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASA 174 (192)
T ss_dssp -CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHH
T ss_pred -CCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHH
Confidence 788889999999999999999998888877 677888888888888888888888888888887 67788888888888
Q ss_pred HhCCCHHHHHHHHhC
Q 011376 174 VKGISSEVVRLLLGA 188 (487)
Q Consensus 174 ~~~~~~e~v~~Ll~~ 188 (487)
+..|+.+++++|++.
T Consensus 175 ~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 175 RIFGRQEVIKIFTEV 189 (192)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHhc
Confidence 888888888888765
No 57
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=3.6e-29 Score=220.82 Aligned_cols=168 Identities=23% Similarity=0.241 Sum_probs=87.8
Q ss_pred cHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCH
Q 011376 66 DPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHV 145 (487)
Q Consensus 66 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~ 145 (487)
||||.|+..|+.++++.|++.+++.....|..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|+.
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~ 82 (172)
T 3v30_A 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGGYT 82 (172)
T ss_dssp CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCH
T ss_pred hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCCCH
Confidence 44555555555555555555544433333445555555555555555555555554443 44445555555555555555
Q ss_pred HHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCc
Q 011376 146 DVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDI 225 (487)
Q Consensus 146 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~ 225 (487)
+++++|++++.++ +..|..|.||||+|+..|+.+++++|++.+.+ .+.+|..|+||||+|+..++.+++++|++ +++
T Consensus 83 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~-~~~ 159 (172)
T 3v30_A 83 DIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIEN-HIL 159 (172)
T ss_dssp HHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHH
T ss_pred HHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHH-HHH
Confidence 5555555555554 44555555666666655666666666555332 33456666666666666666666666666 566
Q ss_pred CccccccCCCCH
Q 011376 226 DVNILTKDRKTA 237 (487)
Q Consensus 226 d~~~~n~~G~t~ 237 (487)
++...|..|.||
T Consensus 160 ~~~~~~~~~~~p 171 (172)
T 3v30_A 160 KLFQSNLVPADP 171 (172)
T ss_dssp HHSCC-------
T ss_pred HHhcccCCCCCC
Confidence 666666666555
No 58
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=3.3e-29 Score=238.79 Aligned_cols=192 Identities=21% Similarity=0.245 Sum_probs=174.2
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhhCCc-ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHH--
Q 011376 64 GLDPLHIAASQGYQDIVQVLLDHYPE-LTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAA-- 140 (487)
Q Consensus 64 g~tpLh~A~~~g~~~iv~~Ll~~~~~-~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~-- 140 (487)
+.+++|.|+..|+.+.++.+++.+.+ ..+..|.+|.||||+|+..|+.+++++|++.++...+..+..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 45789999999999999999988766 234559999999999999999999999999998555889999999999999
Q ss_pred ---HcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHH
Q 011376 141 ---RQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVN 217 (487)
Q Consensus 141 ---~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~ 217 (487)
..++.++++.|++.+.+. ...+..|+||||+|+..|+.+++++|++.+.+ .+.+|..|+||||+|+..|+.++++
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 668899999999999776 77888999999999999999999999999554 5678999999999999999999999
Q ss_pred HHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcC
Q 011376 218 ELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNG 261 (487)
Q Consensus 218 ~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g 261 (487)
+|++..|+|++.+|..|+||||+|+..+ +.+++++|++..
T Consensus 234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g----~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 234 LLLAVPSCDISLTDRDGSTALMVALDAG----QSEIASMLYSRM 273 (276)
T ss_dssp HHHTSTTCCTTCCCTTSCCHHHHHHHHT----CHHHHHHHHHHC
T ss_pred HHHhcCCCCCcCcCCCCCCHHHHHHHcC----CHHHHHHHHhcc
Confidence 9999789999999999999999999999 889999988765
No 59
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=1.1e-28 Score=216.57 Aligned_cols=159 Identities=20% Similarity=0.257 Sum_probs=129.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHH
Q 011376 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAAT 107 (487)
Q Consensus 28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 107 (487)
.|.||||.|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHH
Confidence 477888888888888888888885 5677888888888888888888888888888888877544 7788888888888
Q ss_pred cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHh
Q 011376 108 KGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLG 187 (487)
Q Consensus 108 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~ 187 (487)
.|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++
T Consensus 79 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp HTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 88888888888888776 667778888888888888888888888888776 6677778888888888888888888877
Q ss_pred CCcc
Q 011376 188 ADSA 191 (487)
Q Consensus 188 ~~~~ 191 (487)
++..
T Consensus 157 ~~~~ 160 (167)
T 3v31_A 157 HLLK 160 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6443
No 60
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.3e-28 Score=217.33 Aligned_cols=170 Identities=24% Similarity=0.294 Sum_probs=148.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHc
Q 011376 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATK 108 (487)
Q Consensus 29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 108 (487)
+.||||.|+..|+.++++.|++.+ ...++..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~ 79 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL-AKERESALSLASTG 79 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhh-cccCCCHHHHHHHC
Confidence 468999999999999999999963 4447888999999999999999999999999999998655 88999999999999
Q ss_pred CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhC
Q 011376 109 GHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGA 188 (487)
Q Consensus 109 g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~ 188 (487)
|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++
T Consensus 80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 80 GYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 9999999999999987 788899999999999999999999999999998 78899999999999999999999999998
Q ss_pred CcccccCcCCCCCcH
Q 011376 189 DSAIAMLPDKFGNTA 203 (487)
Q Consensus 189 ~~~~~~~~d~~g~T~ 203 (487)
+... ..++..|.||
T Consensus 158 ~~~~-~~~~~~~~~p 171 (172)
T 3v30_A 158 ILKL-FQSNLVPADP 171 (172)
T ss_dssp HHHH-SCC-------
T ss_pred HHHH-hcccCCCCCC
Confidence 6544 3456677766
No 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1.2e-28 Score=215.17 Aligned_cols=157 Identities=28% Similarity=0.356 Sum_probs=106.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHH
Q 011376 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAAT 107 (487)
Q Consensus 28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 107 (487)
...||||.|+..|+.+++++|++. +.+++..|..|+||||+|+. |+.+++++|+++|++++.. |..|.||||+|+.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~ 79 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK-DRTGFAVIHDAAR 79 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhC--CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHH
Confidence 455777777777777777777763 56666677777777777777 7777777777777666443 6667777777777
Q ss_pred cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHh
Q 011376 108 KGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLG 187 (487)
Q Consensus 108 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~ 187 (487)
.|+.+++++|++.++++ +.+|.+|.||||+|+..|+.+++++|++++++..+..|..|.||||+|+..|+.+++++|++
T Consensus 80 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 158 (162)
T 1ihb_A 80 AGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158 (162)
T ss_dssp HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 77777777777766665 55666666777777766667777766666666445566666666666666666666666666
Q ss_pred CC
Q 011376 188 AD 189 (487)
Q Consensus 188 ~~ 189 (487)
++
T Consensus 159 ~G 160 (162)
T 1ihb_A 159 NG 160 (162)
T ss_dssp TC
T ss_pred hC
Confidence 54
No 62
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1e-28 Score=215.52 Aligned_cols=159 Identities=23% Similarity=0.274 Sum_probs=144.0
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc
Q 011376 63 SGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQ 142 (487)
Q Consensus 63 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~ 142 (487)
...||||.|+..|+.+++++|+++|++++.. |..|.||||+|+. |+.+++++|++.++++ +..+..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA 80 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCC-CTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCcccc-CccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 4568999999999999999999999888554 8899999999999 9999999999999887 77889999999999999
Q ss_pred CCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhcc
Q 011376 143 GHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLAL 222 (487)
Q Consensus 143 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~ 222 (487)
|+.+++++|++++.++ +.+|..|.||||+|+..|+.+++++|++.+++..+.+|..|+||||+|+..|+.+++++|++
T Consensus 81 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~- 158 (162)
T 1ihb_A 81 GFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA- 158 (162)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-
T ss_pred CCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH-
Confidence 9999999999999987 78899999999999999999999999999887778889999999999999999999999998
Q ss_pred CCcC
Q 011376 223 SDID 226 (487)
Q Consensus 223 ~g~d 226 (487)
+|+|
T Consensus 159 ~GAd 162 (162)
T 1ihb_A 159 NGAG 162 (162)
T ss_dssp TC--
T ss_pred hCCC
Confidence 6765
No 63
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=4.8e-28 Score=213.11 Aligned_cols=158 Identities=30% Similarity=0.463 Sum_probs=118.0
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHH
Q 011376 26 NELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITA 105 (487)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 105 (487)
...+.|+||.|++.|+.++|++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A 87 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLA 87 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHH
Confidence 44566788888888888888888874 6677777777888888888888888888888877776544 77777888888
Q ss_pred HHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHH
Q 011376 106 ATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185 (487)
Q Consensus 106 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~L 185 (487)
+..|+.+++++|+++++++ +..|.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+++|+.+++++|
T Consensus 88 ~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L 165 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence 8777777888777777766 566677777777777777777777777777776 56677777777777777777777777
Q ss_pred HhC
Q 011376 186 LGA 188 (487)
Q Consensus 186 l~~ 188 (487)
++.
T Consensus 166 ~~~ 168 (169)
T 2y1l_E 166 QKL 168 (169)
T ss_dssp HTC
T ss_pred HHc
Confidence 654
No 64
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=2.6e-28 Score=219.46 Aligned_cols=162 Identities=22% Similarity=0.264 Sum_probs=138.6
Q ss_pred ccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcH
Q 011376 56 GVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNA 135 (487)
Q Consensus 56 ~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp 135 (487)
.++.+|..|+||||+|+..|+.+++++|++++++++.. |..|.||||+|+..|+.+++++|++.++++ +..|..|.||
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~ 104 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTP 104 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCH
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccc-cccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcH
Confidence 35678888999999999999999999999998887544 888999999999999999999999988876 6778889999
Q ss_pred HHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHH
Q 011376 136 LHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEI 215 (487)
Q Consensus 136 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~i 215 (487)
||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+. ..+.+|..|+||||+|+..|+.++
T Consensus 105 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~~~~~~~ 182 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGA-DISARDLTGLTAEASARIFGRQEV 182 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHhCcHHH
Confidence 99999999999999999988887 7778888888888888888888888888754 455678888888888888888888
Q ss_pred HHHHhc
Q 011376 216 VNELLA 221 (487)
Q Consensus 216 v~~Ll~ 221 (487)
+++|++
T Consensus 183 v~~Ll~ 188 (192)
T 2rfm_A 183 IKIFTE 188 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888887
No 65
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=1.1e-27 Score=210.24 Aligned_cols=155 Identities=23% Similarity=0.311 Sum_probs=134.6
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc
Q 011376 63 SGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQ 142 (487)
Q Consensus 63 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~ 142 (487)
.|.||||.|+..|+.+++++|++.+++++.. |..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCC-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence 4789999999999999999999998876544 888999999999999999999999998877 67788899999999999
Q ss_pred CCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhc
Q 011376 143 GHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLA 221 (487)
Q Consensus 143 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~ 221 (487)
|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++++.+ .+.+|..|+||||+|+..|+.+++++|++
T Consensus 80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 80 GYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp TCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 9999999999998887 77888899999999999999999999887544 45678888999999999999999988887
No 66
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=1.1e-27 Score=207.66 Aligned_cols=154 Identities=26% Similarity=0.388 Sum_probs=128.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHc
Q 011376 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATK 108 (487)
Q Consensus 29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 108 (487)
|.||||.|+..|+.+++++|++. .+.+++..|..|.||||+ +..|+.+++++|+++|++++.. |..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ-DTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHc
Confidence 56899999999999999999986 456788888889999999 8889999999999998887554 78888898888888
Q ss_pred CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhC
Q 011376 109 GHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGA 188 (487)
Q Consensus 109 g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~ 188 (487)
|+.+++++|++.++++ +..|.+|.||||+|+..|+.+++++|++. .++ +..|..|.||||+|+..|+.+++++|+++
T Consensus 79 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 8888888888888776 66778888888888888888888888888 665 67777888888888888888888888754
No 67
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=3.9e-28 Score=212.65 Aligned_cols=160 Identities=24% Similarity=0.349 Sum_probs=123.4
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHH
Q 011376 25 VNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLIT 104 (487)
Q Consensus 25 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 104 (487)
.|.+|.||||.|+..|+.++++.|++. .+.+.+..+..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~ 81 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHN 81 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHc-CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCcc-CCCCCCHHHH
Confidence 356778888888888888888888875 35566667777888888888888888888888888776544 7778888888
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHH
Q 011376 105 AATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRL 184 (487)
Q Consensus 105 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~ 184 (487)
|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|+++|.++ +.+|..|.||||+|++ ++.+++++
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~i~~~ 158 (165)
T 3twr_A 82 ACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTDIQDL 158 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred HHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChHHHHH
Confidence 88888888888888887776 667777888888888888888888888887776 6677777888877655 77777777
Q ss_pred HHhCC
Q 011376 185 LLGAD 189 (487)
Q Consensus 185 Ll~~~ 189 (487)
|++.+
T Consensus 159 L~~~g 163 (165)
T 3twr_A 159 LRGDA 163 (165)
T ss_dssp HHTC-
T ss_pred Hhhcc
Confidence 77654
No 68
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=1.9e-27 Score=205.60 Aligned_cols=150 Identities=26% Similarity=0.366 Sum_probs=106.3
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcC
Q 011376 30 ETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKG 109 (487)
Q Consensus 30 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 109 (487)
.||||.|+..|+.+++++|++. +.+++ .|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~--g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMAN--GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH--TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHT
T ss_pred cHHHHHHHHcCCHHHHHHHHHc--CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcC
Confidence 4677777777777777777775 33333 4666777777777777777777777777766443 667777777777777
Q ss_pred CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHH
Q 011376 110 HVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLL 185 (487)
Q Consensus 110 ~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~L 185 (487)
+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.+|+.+++++|
T Consensus 79 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 79 HANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 777777777777665 556667777777777777777777777777766 56666777777777777777776665
No 69
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.2e-30 Score=241.50 Aligned_cols=176 Identities=16% Similarity=0.102 Sum_probs=85.1
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc
Q 011376 63 SGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQ 142 (487)
Q Consensus 63 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~ 142 (487)
+|.||||.|+..|+.+++++|++.|++++.. |..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..
T Consensus 20 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~ 97 (229)
T 2vge_A 20 NPLVLLLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASC 97 (229)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHSSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred chhHHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence 3344455555555555555555555444322 445555555555555555555555554444 44444555555555555
Q ss_pred CCHHHHHHHhhcCCccccccCCCCChHHHHH--HhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHh
Q 011376 143 GHVDVVKHILKKDTQLARHTDKKGQTALHMA--VKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELL 220 (487)
Q Consensus 143 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll 220 (487)
|+.+++++|+++|+++....+..|+||||+| +..|+.+++++|++.+.+ .+.+|..|.||+|.++..... +.|+
T Consensus 98 g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~l~~~~~~~~~---~~ll 173 (229)
T 2vge_A 98 NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYSAEFGD---ELSF 173 (229)
T ss_dssp TCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEEESSCBCCSSTT---BCCB
T ss_pred CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchHHHHHHhhcccc---ccCc
Confidence 5555555555555544222223455555555 555555555555554322 333444555555533332211 2334
Q ss_pred ccCCcC--ccccccCCCCHHhHHhhCC
Q 011376 221 ALSDID--VNILTKDRKTALDIAEGLP 245 (487)
Q Consensus 221 ~~~g~d--~~~~n~~G~t~L~~A~~~~ 245 (487)
+ .|++ ++.+|..|+||||+|+..|
T Consensus 174 ~-~ga~~~~~~~d~~G~TpL~~A~~~g 199 (229)
T 2vge_A 174 R-EGESVTVLRRDGPEETDWWWAALHG 199 (229)
T ss_dssp C-TTCEEEEEESSCTTCSSEEEEEETT
T ss_pred c-ccccccccccCCCcccHHHHHHHcC
Confidence 3 4554 4455555666666665555
No 70
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=1.6e-27 Score=211.71 Aligned_cols=166 Identities=19% Similarity=0.286 Sum_probs=83.3
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC
Q 011376 64 GLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQG 143 (487)
Q Consensus 64 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g 143 (487)
+.+|||.|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcC
Confidence 3344444444444444444444433322333444444444444444444444444444443 334444555555555555
Q ss_pred CHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccC
Q 011376 144 HVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALS 223 (487)
Q Consensus 144 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~ 223 (487)
+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++++.+ .+.+|..|+||||+|+..++.+++++|++ .
T Consensus 84 ~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~~-~ 160 (179)
T 3f6q_A 84 HRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAEK-M 160 (179)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHHHHHHH-h
Confidence 555555555555544 44455555555555555555555555555322 33455666666666666666666666666 5
Q ss_pred CcCccccccC
Q 011376 224 DIDVNILTKD 233 (487)
Q Consensus 224 g~d~~~~n~~ 233 (487)
|++++..+..
T Consensus 161 g~~~~~~~~~ 170 (179)
T 3f6q_A 161 GQNLNRIPYK 170 (179)
T ss_dssp TCCCSCBCCC
T ss_pred hcCcccCCcc
Confidence 6666554443
No 71
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=3.5e-27 Score=207.57 Aligned_cols=157 Identities=29% Similarity=0.403 Sum_probs=123.3
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHH
Q 011376 61 SNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAA 140 (487)
Q Consensus 61 ~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~ 140 (487)
...+.+|||.|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAA 88 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHH
Confidence 345667888888888888888888888877544 778888888888888888888888887776 667778888888888
Q ss_pred HcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHh
Q 011376 141 RQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELL 220 (487)
Q Consensus 141 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll 220 (487)
..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++++.+ .+.+|..|+||||+|+..++.+++++|+
T Consensus 89 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 166 (169)
T 2y1l_E 89 LFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQ 166 (169)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 888888888888888776 66777788888888888888888888877544 4556777888888888888888888877
Q ss_pred c
Q 011376 221 A 221 (487)
Q Consensus 221 ~ 221 (487)
+
T Consensus 167 ~ 167 (169)
T 2y1l_E 167 K 167 (169)
T ss_dssp T
T ss_pred H
Confidence 6
No 72
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=2.2e-27 Score=210.82 Aligned_cols=164 Identities=20% Similarity=0.300 Sum_probs=150.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHH
Q 011376 27 ELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAA 106 (487)
Q Consensus 27 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 106 (487)
.++.++||.|+..|+.++|++|++. .+.+++..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~ 80 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDN-TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM-NRGDDTPLHLAA 80 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHC-TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhc-CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCCHHHHHH
Confidence 4678999999999999999999996 36778999999999999999999999999999999998655 899999999999
Q ss_pred HcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHH
Q 011376 107 TKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLL 186 (487)
Q Consensus 107 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll 186 (487)
..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++.+++++|+
T Consensus 81 ~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 81 SHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 788999999999999999999999999999998 889999999999999999999999999
Q ss_pred hCCccccc
Q 011376 187 GADSAIAM 194 (487)
Q Consensus 187 ~~~~~~~~ 194 (487)
+.+.+...
T Consensus 159 ~~g~~~~~ 166 (179)
T 3f6q_A 159 KMGQNLNR 166 (179)
T ss_dssp HTTCCCSC
T ss_pred HhhcCccc
Confidence 98766543
No 73
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=5.8e-27 Score=202.54 Aligned_cols=151 Identities=28% Similarity=0.338 Sum_probs=124.8
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC
Q 011376 64 GLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQG 143 (487)
Q Consensus 64 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g 143 (487)
..||||.|+..|+.+++++|+++|++.. .+..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence 3578899999999999999999888764 4778889999999999999999999888876 667788888888888888
Q ss_pred CHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHH
Q 011376 144 HVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNEL 219 (487)
Q Consensus 144 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~L 219 (487)
+.+++++|+++|+++ +.+|..|.||||+|+.+|+.+++++|++++.+ .+.+|..|+||||+|+..|+.+++++|
T Consensus 79 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 79 HANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 888888888888887 67788888888888888888888888887543 456688888888888888888888775
No 74
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=3e-27 Score=206.97 Aligned_cols=160 Identities=26% Similarity=0.324 Sum_probs=101.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHH
Q 011376 95 GQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAV 174 (487)
Q Consensus 95 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 174 (487)
|.+|.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|++++.++ +.+|..|.||||+|+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNAC 83 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHH
Confidence 4445566666666666666666665444333445555666666666666666666666666655 555666666666666
Q ss_pred hCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHH
Q 011376 175 KGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELK 254 (487)
Q Consensus 175 ~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~ 254 (487)
..|+.+++++|++.+.+ .+.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|.. + +.+++
T Consensus 84 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~----~~~i~ 156 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-G----DTDIQ 156 (165)
T ss_dssp HTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-T----CHHHH
T ss_pred HcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-C----ChHHH
Confidence 66666666666665333 34556677777777777777777777777 577777777777777777655 4 45677
Q ss_pred HHHHhcCc
Q 011376 255 ECLERNGA 262 (487)
Q Consensus 255 ~~L~~~g~ 262 (487)
++|.++|+
T Consensus 157 ~~L~~~gA 164 (165)
T 3twr_A 157 DLLRGDAA 164 (165)
T ss_dssp HHHHTC--
T ss_pred HHHhhccc
Confidence 77776664
No 75
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=5.5e-29 Score=230.38 Aligned_cols=201 Identities=18% Similarity=0.171 Sum_probs=168.0
Q ss_pred HHHHHhHHHHH---hccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCc
Q 011376 13 EVVEIRAAVVE---EVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPE 89 (487)
Q Consensus 13 ~ll~~~~~~~~---~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~ 89 (487)
.+++ .++..+ ..+.+|.||||.|+..|+.++|++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 3 ~ll~-~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 3 SVLR-KAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ehhc-cCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 3444 344444 3445677889999999999999999995 778999999999999999999999999999999999
Q ss_pred ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHH--HHcCCHHHHHHHhhcCCccccccCCCCC
Q 011376 90 LTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLA--ARQGHVDVVKHILKKDTQLARHTDKKGQ 167 (487)
Q Consensus 90 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A--~~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 167 (487)
++.. |..|.||||+|+..|+.+++++|++.++++....+.+|.||||+| +..|+.+++++|++.|+++ +..|..|.
T Consensus 80 ~n~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~~ 157 (229)
T 2vge_A 80 VNSP-DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAV 157 (229)
T ss_dssp TTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGEE
T ss_pred CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCch
Confidence 8655 889999999999999999999999999998444447999999999 9999999999999999998 77888999
Q ss_pred hHHHHHHhCCCHHHHHHHHhCCccc-ccCcCCCCCcHHHHHHhcCcHHHHHHHhc
Q 011376 168 TALHMAVKGISSEVVRLLLGADSAI-AMLPDKFGNTALHVATRKKRIEIVNELLA 221 (487)
Q Consensus 168 t~Lh~A~~~~~~e~v~~Ll~~~~~~-~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~ 221 (487)
||+|.++..... ++|++.+... .+.+|..|+||||+|+..|+.++|+.++-
T Consensus 158 ~~l~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l 209 (229)
T 2vge_A 158 YALWDYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF 209 (229)
T ss_dssp EESSCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred HHHHHHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCCcceeehhhh
Confidence 999976655433 5667765543 56789999999999999999999877554
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=9.6e-27 Score=201.68 Aligned_cols=153 Identities=24% Similarity=0.289 Sum_probs=128.3
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC
Q 011376 64 GLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQG 143 (487)
Q Consensus 64 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g 143 (487)
|.||||.|+..|+.++++.|++..+......|..|.||||+ +..|+.+++++|++.++++ +..|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence 45889999999999999999988322334458888999999 8889999999999888876 777888899999999999
Q ss_pred CHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhc
Q 011376 144 HVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLA 221 (487)
Q Consensus 144 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~ 221 (487)
+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++. ...+.+|..|+||||+|+..|+.+++++|++
T Consensus 80 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 999999999988887 77788888999999988889999888887 4556678888899999988888888888886
No 77
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=1.1e-28 Score=230.14 Aligned_cols=211 Identities=17% Similarity=0.175 Sum_probs=143.7
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHH
Q 011376 26 NELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITA 105 (487)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 105 (487)
+..|.||||.|+..|+.+.++.|++. +.+++. +..|.||||.|+..|+.+++++|+++|++++.. |..|.||||+|
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~--g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A 77 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAH--GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNA 77 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCC-CTTSCCHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhcc--CCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHH
Confidence 45799999999999999999999996 566654 467899999999999999999999999987655 89999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCC-hHHHHH--HhCCCHHHH
Q 011376 106 ATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQ-TALHMA--VKGISSEVV 182 (487)
Q Consensus 106 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A--~~~~~~e~v 182 (487)
+..|+.+++++|+++++++ +..|.+|+||||+|+..|+.+++++|+++|+++ +..+..|. ||||+| +..|+.+++
T Consensus 78 ~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 78 VCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp HHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred HHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHH
Confidence 9999999999999999887 788899999999999999999999999999998 56666665 999999 788999999
Q ss_pred HHHHhCCcccc--------cCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcC------ccccccCCCCHHhHHhhCC
Q 011376 183 RLLLGADSAIA--------MLPDKFGNTALHVATRKKRIEIVNELLALSDID------VNILTKDRKTALDIAEGLP 245 (487)
Q Consensus 183 ~~Ll~~~~~~~--------~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d------~~~~n~~G~t~L~~A~~~~ 245 (487)
++|++.+.+.. ...|..+.++++++...|. +++.+.+ .+.+ ....+..|.+|.++....+
T Consensus 156 ~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~-~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~ 229 (239)
T 1ycs_B 156 QFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHR-EDEDEIEWWWARLNDKEGYVPRNLLGLYP 229 (239)
T ss_dssp HHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCC-CTTSCSSEEEEEETTEEEEEEGGGEECCC
T ss_pred HHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEe-cCCCCCCEEEEEECCcEEEeehHHeeECC
Confidence 99998654322 1236778999999888776 3333333 3333 2356677888888876554
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=2e-27 Score=221.46 Aligned_cols=179 Identities=16% Similarity=0.195 Sum_probs=130.0
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHH
Q 011376 61 SNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAA 140 (487)
Q Consensus 61 ~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~ 140 (487)
+..|.||||.|+..|+.++++.|+++|.++.. +..|.||||.|+..|+.+++++|++.++++ +..|..|.||||+|+
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAV 78 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence 34699999999999999999999999998863 467899999999999999999999999976 788999999999999
Q ss_pred HcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCC-cHHHHH--HhcCcHHHHH
Q 011376 141 RQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGN-TALHVA--TRKKRIEIVN 217 (487)
Q Consensus 141 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~-T~Lh~A--~~~~~~~iv~ 217 (487)
..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|++++.+.. .+|..|. ||||+| +..|+.++++
T Consensus 79 ~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~~t~l~~a~~~~~g~~~~~~ 156 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-AMTYSDMQTAADKCEEMEEGYTQCSQ 156 (239)
T ss_dssp HHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred HcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-eecCCCCcchHHHHHHhhhccHHHHH
Confidence 999999999999999998 8899999999999999999999999999976654 4566655 999999 7889999999
Q ss_pred HHhccCCcCcccc---------ccCCCCHHhHHhhCC
Q 011376 218 ELLALSDIDVNIL---------TKDRKTALDIAEGLP 245 (487)
Q Consensus 218 ~Ll~~~g~d~~~~---------n~~G~t~L~~A~~~~ 245 (487)
+|++ .|++++.. +..+.++++++...|
T Consensus 157 ~Ll~-~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G 192 (239)
T 1ycs_B 157 FLYG-VQEKMGIMNKGVIYALWDYEPQNDDELPMKEG 192 (239)
T ss_dssp HHHH-HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSS
T ss_pred HHHH-hhhcccccccceEEEEeccCCCCCCcccccCC
Confidence 9999 78888776 566888888887766
No 79
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=1.8e-28 Score=242.59 Aligned_cols=227 Identities=18% Similarity=0.161 Sum_probs=168.0
Q ss_pred HhccCCCCcHHHHHHHcCCHHHHHHHHHhcccc-ccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCccc--ccCCCCCC
Q 011376 23 EEVNELGETALFIAAKNGHLDVVKELLQYMTKE-GVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELT--KTLGQSNA 99 (487)
Q Consensus 23 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~-~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~--~~~~~~g~ 99 (487)
...+.++.||||.||+.|+.++|++|++.+... ..+..|..|.||||+|+..|+.++|++|+++|++.. ...+.+ .
T Consensus 86 ~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~ 164 (376)
T 2aja_A 86 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-Y 164 (376)
T ss_dssp HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-H
T ss_pred HHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-C
Confidence 345567789999999999999999999964211 122345568899999999999999999999997521 111222 8
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCccc--CCCCCCcHHHHHH-HcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhC
Q 011376 100 TPLITAATKGHVDVLHVLLSKDPHLLKI--PRSNGKNALHLAA-RQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKG 176 (487)
Q Consensus 100 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~~g~tpLh~A~-~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 176 (487)
||||+|+..|+.+++++|+++++++ .. .|..|.||||+|+ ..|+.+++++|++.|.+ |.||||+|+.+
T Consensus 165 TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--------~~taL~~Aa~~ 235 (376)
T 2aja_A 165 HAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--------LAYAEIHEFEY 235 (376)
T ss_dssp HHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--------HHHHHHCTTTT
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--------cchHHHHHHHC
Confidence 9999999999999999999999886 33 6778999999999 99999999999996632 78999999999
Q ss_pred CCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcC---------------------------cHHHHHHHhccCCcC---
Q 011376 177 ISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKK---------------------------RIEIVNELLALSDID--- 226 (487)
Q Consensus 177 ~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~---------------------------~~~iv~~Ll~~~g~d--- 226 (487)
|+.+++++|++.+.... ..| ++++.|+..| ..+.+++|++..+++
T Consensus 236 g~~evv~lL~~~ga~~~-~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~ 310 (376)
T 2aja_A 236 GEKYVNPFIARHVNRLK-EMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALA 310 (376)
T ss_dssp TTTTHHHHHHHHHHHHH-HHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGS
T ss_pred CCHHHHHHHHhcCcccc-ccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhh
Confidence 99999999998754332 111 1233333222 345566666532211
Q ss_pred -ccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcCcHhHhhc
Q 011376 227 -VNILTKDRKTALDIAEGLPFSEETAELKECLERNGAVRAREL 268 (487)
Q Consensus 227 -~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~~~~~~~ 268 (487)
.....+.+.||||+|+..| +.+++++|++.+..+....
T Consensus 311 ~~g~~~n~~~~~L~~A~~~g----~~e~v~lLl~~~~v~~~~~ 349 (376)
T 2aja_A 311 PTATIPGDANELLRLALRLG----NQGACALLLSIPSVLALTK 349 (376)
T ss_dssp SCCSSTTCCCHHHHHHHHHT----CTTHHHHHTTSHHHHHSCC
T ss_pred ccCCCCCCccHHHHHHHHcC----cHHHHHHHHcChHHHHHHH
Confidence 1122345678999999988 7788999998876655443
No 80
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.92 E-value=4.1e-27 Score=232.83 Aligned_cols=193 Identities=17% Similarity=0.106 Sum_probs=155.6
Q ss_pred CcHHHHHHH-cCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCccc--ccCCCCCCcHHHHHH
Q 011376 30 ETALFIAAK-NGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELT--KTLGQSNATPLITAA 106 (487)
Q Consensus 30 ~T~Lh~Aa~-~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~--~~~~~~g~tpL~~A~ 106 (487)
.+.++.|.. .++.++++++++. + .+++||||.|+..|+.+++++|+++|+... ...+..|.||||+|+
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~--g-------~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa 136 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKK--G-------IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA 136 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHH--T-------CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHc--C-------CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence 457777776 5788899988875 2 234599999999999999999999987321 122556789999999
Q ss_pred HcCCHHHHHHHHhcCCCC--cccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccc--cCCCCChHHHHHH-hCCCHHH
Q 011376 107 TKGHVDVLHVLLSKDPHL--LKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARH--TDKKGQTALHMAV-KGISSEV 181 (487)
Q Consensus 107 ~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~--~d~~g~t~Lh~A~-~~~~~e~ 181 (487)
..|+.+++++|++++++. .+..+.+ .||||+|+..|+.+++++|+++|+++ +. .|..|.||||+|+ .+|+.++
T Consensus 137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~ei 214 (376)
T 2aja_A 137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNV 214 (376)
T ss_dssp HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHH
Confidence 999999999999999752 1222233 89999999999999999999999987 44 7888999999999 9999999
Q ss_pred HHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCC
Q 011376 182 VRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPF 246 (487)
Q Consensus 182 v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~ 246 (487)
+++|++.+. .|+||||+|+..|+.+++++|++ .|++++..+. +++.|...|.
T Consensus 215 v~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~-~ga~~~~~~~----~l~~A~~~g~ 266 (376)
T 2aja_A 215 INFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIAR-HVNRLKEMHD----AFKLSNPDGV 266 (376)
T ss_dssp HHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHH-HHHHHHHHHT----TTTTTSSSSC
T ss_pred HHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHh-cCcccccccH----HHHHHHHCCC
Confidence 999998642 28899999999999999999999 7888877653 5556665553
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=2.1e-25 Score=188.73 Aligned_cols=133 Identities=23% Similarity=0.337 Sum_probs=102.5
Q ss_pred HHHHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCC-C
Q 011376 20 AVVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQS-N 98 (487)
Q Consensus 20 ~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-g 98 (487)
.+++.+|..|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+. |+.+++++|+++|++++.. |.. |
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~-~~~~g 78 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEA--GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA-DPATL 78 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCC-BTTTT
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHc--CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCc-CCCCC
Confidence 34566777888888888888888888888874 66777777788888888888 8888888888888776554 666 7
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCc
Q 011376 99 ATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQ 157 (487)
Q Consensus 99 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~ 157 (487)
.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|+++|++
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 88888888888888888888877776 66677788888888888888888888777653
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=5.4e-25 Score=190.83 Aligned_cols=146 Identities=23% Similarity=0.289 Sum_probs=106.9
Q ss_pred HHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCc-
Q 011376 22 VEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNAT- 100 (487)
Q Consensus 22 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t- 100 (487)
.+..++.|.||||.|+..|+.++|++|++. +.+++..|..|.||||+|+ .|+.+++++|+++|++++.. |..|.|
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~-d~~g~tt 80 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA-DPATLTR 80 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC-CTTTCCC
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCc-CCCCCcH
Confidence 345677889999999999999999999985 6778888888999999885 88899999999988887554 788888
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHH
Q 011376 101 PLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMA 173 (487)
Q Consensus 101 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 173 (487)
|||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||.+-+
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 81 PVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCcccccC
Confidence 999999989999999998888877 677888888888888888888888888888887 77788888876643
No 83
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=1.4e-24 Score=183.69 Aligned_cols=132 Identities=20% Similarity=0.271 Sum_probs=101.5
Q ss_pred ccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCC-C
Q 011376 54 KEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSN-G 132 (487)
Q Consensus 54 ~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g 132 (487)
+.+++..|..|.||||.|+..|+.+++++|+++|++++.. |..|.||||+|+. |+.+++++|+++++++ +.+|.. |
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g 78 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATL 78 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTT
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCC
Confidence 3567777888888888888888888888888888776544 7778888888888 8888888888887776 566666 7
Q ss_pred CcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCC
Q 011376 133 KNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGAD 189 (487)
Q Consensus 133 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~ 189 (487)
.||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+.+++.+++++|++++
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G 134 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 78888888888888888888777776 666777777777777777777777777654
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=1.8e-24 Score=187.60 Aligned_cols=142 Identities=20% Similarity=0.215 Sum_probs=77.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCCh-HHHHH
Q 011376 95 GQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQT-ALHMA 173 (487)
Q Consensus 95 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~Lh~A 173 (487)
+..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+ .|+.+++++|+++|.++ +.+|..|.| |||+|
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A 85 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDA 85 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence 444555555555555555555555555544 444555556666553 55566666666665555 555566666 66666
Q ss_pred HhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHH
Q 011376 174 VKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIA 241 (487)
Q Consensus 174 ~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A 241 (487)
+..|+.+++++|++++. ..+.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||.+-+
T Consensus 86 ~~~~~~~~v~~Ll~~ga-~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAGA-RLDVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHTCHHHHHHHHHHTC-CSSCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC-----------------
T ss_pred HHCCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccC
Confidence 66666666666666533 344567778888888888888888888887 6888888888888877643
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=1.2e-24 Score=194.24 Aligned_cols=152 Identities=16% Similarity=0.111 Sum_probs=102.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhccccccccCC-CCCCcHHHHHHHcCcH----HHHHHHHhhCCcccccCCCCCCcHHH
Q 011376 29 GETALFIAAKNGHLDVVKELLQYMTKEGVSLKS-NSGLDPLHIAASQGYQ----DIVQVLLDHYPELTKTLGQSNATPLI 103 (487)
Q Consensus 29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-~~g~tpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpL~ 103 (487)
+.++||.|++.|+.+.++.+++. + ++..+ ..|+||||+|+.+|+. +++++|+++|++++.. |..|+||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~--~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~-d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEK--G--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSR-TKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHH--S--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCC-CTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhc--C--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCC-CCCCCcHHH
Confidence 45788888888888888888763 2 33344 6688888888888864 4788888888887655 788888888
Q ss_pred HHHHcCC------HHHHHHHHhcCCCCcccCCCCCC-cHHHHHHHcC-----CHHHHHHHhh-cCCccccccCCCCChHH
Q 011376 104 TAATKGH------VDVLHVLLSKDPHLLKIPRSNGK-NALHLAARQG-----HVDVVKHILK-KDTQLARHTDKKGQTAL 170 (487)
Q Consensus 104 ~A~~~g~------~~~v~~Ll~~~~~~~~~~~~~g~-tpLh~A~~~g-----~~~~v~~Ll~-~~~~~~~~~d~~g~t~L 170 (487)
+|+..|+ .+++++|+++|+++ +.+|..|. ||||+|+..+ +.++++.|++ +|+++ +.+|..|.|||
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL 158 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTAL 158 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHH
Confidence 8888776 45666677666665 55666666 6666666633 2345566665 55555 55555666666
Q ss_pred HHHHhCCCHHHHHHHHh
Q 011376 171 HMAVKGISSEVVRLLLG 187 (487)
Q Consensus 171 h~A~~~~~~e~v~~Ll~ 187 (487)
|+|++.|+.+++++|..
T Consensus 159 ~~A~~~~~~~~v~~L~~ 175 (186)
T 3t8k_A 159 EFVKRCQKPIALKMMED 175 (186)
T ss_dssp HHHHTTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 66666666666555554
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=9.4e-25 Score=194.91 Aligned_cols=154 Identities=15% Similarity=0.151 Sum_probs=98.9
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCH----HHHHHHHhcCCCCcccCCCCCCcHHHHH
Q 011376 64 GLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHV----DVLHVLLSKDPHLLKIPRSNGKNALHLA 139 (487)
Q Consensus 64 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~tpLh~A 139 (487)
+.++||.|+..|+.+.++.+++.+.+.. .+..|+||||+|+..|+. +++++|+++|+++ +.+|.+|+||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~--~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSCH--HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcccc--cccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence 4567777777777777777777665432 125577777777777764 4777777777776 66677777777777
Q ss_pred HHcCC------HHHHHHHhhcCCccccccCCCCC-hHHHHHHhCCC-----HHHHHHHHhCCcccccCcCCCCCcHHHHH
Q 011376 140 ARQGH------VDVVKHILKKDTQLARHTDKKGQ-TALHMAVKGIS-----SEVVRLLLGADSAIAMLPDKFGNTALHVA 207 (487)
Q Consensus 140 ~~~g~------~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~~-----~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A 207 (487)
+..|+ .+++++|+++|+++ +.+|..|. ||||+|+..+. .+++++|++..+...+.+|..|+||||+|
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A 161 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV 161 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence 77665 45666777776666 56666666 66666666332 34556666522334445566666666666
Q ss_pred HhcCcHHHHHHHhc
Q 011376 208 TRKKRIEIVNELLA 221 (487)
Q Consensus 208 ~~~~~~~iv~~Ll~ 221 (487)
+..++.+++++|.+
T Consensus 162 ~~~~~~~~v~~L~~ 175 (186)
T 3t8k_A 162 KRCQKPIALKMMED 175 (186)
T ss_dssp HTTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 66666666666554
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=3.6e-23 Score=171.84 Aligned_cols=126 Identities=40% Similarity=0.649 Sum_probs=103.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHH
Q 011376 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAAT 107 (487)
Q Consensus 28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 107 (487)
+|.||||.|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|+++|+++... |..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCcHHHHHHH
Confidence 478888888888888888888885 6677778888888888888888888888888888876544 7788888888888
Q ss_pred cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCc
Q 011376 108 KGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQ 157 (487)
Q Consensus 108 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~ 157 (487)
.|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred cChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 88888888888888776 66777888888888888888888888887764
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=2.1e-23 Score=176.37 Aligned_cols=126 Identities=29% Similarity=0.398 Sum_probs=92.7
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHH
Q 011376 26 NELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITA 105 (487)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 105 (487)
...|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A 87 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMAN--GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLA 87 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHH
Confidence 34567777888888888877777774 6667777777777777777777777777777777776544 66777777777
Q ss_pred HHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcC
Q 011376 106 ATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKD 155 (487)
Q Consensus 106 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~ 155 (487)
+..|+.+++++|+++++++ +..|.+|.||||+|+..|+.+++++|++.|
T Consensus 88 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 7777777777777777765 566677777777777777777777777654
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=1.4e-22 Score=168.14 Aligned_cols=124 Identities=39% Similarity=0.650 Sum_probs=86.6
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc
Q 011376 63 SGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQ 142 (487)
Q Consensus 63 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~ 142 (487)
+|+||||.|+..|+.+++++|+++++++... +..|.||||+|+..|+.+++++|++.++++ +.++..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc
Confidence 4677777777777777777777777766443 667777777777777777777777776665 55666677777777777
Q ss_pred CCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCC
Q 011376 143 GHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGAD 189 (487)
Q Consensus 143 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~ 189 (487)
|+.+++++|+++++++ +.+|..|.||||+|+..++.+++++|++++
T Consensus 79 ~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 124 (126)
T 1n0r_A 79 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124 (126)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred ChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 7777777777776665 556666666666666666666666666554
No 90
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=1.5e-23 Score=186.87 Aligned_cols=141 Identities=21% Similarity=0.228 Sum_probs=102.7
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHH
Q 011376 25 VNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLIT 104 (487)
Q Consensus 25 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 104 (487)
.|.+|.||||.|+..|+.++++.|++ +.+++.+|..|.||||+|+..|+.+++++|+++|++++...+..|+||||+
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence 34567788888888888888888877 556777777888888888888888888888888877765534777788888
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHH
Q 011376 105 AATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRL 184 (487)
Q Consensus 105 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~ 184 (487)
|+..|+.+++++|+++++++ +.+|.+|.||||+|+..++ ...+.++|++|++.|+.+++++
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~~~~~~i~~~ 177 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINV 177 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHHcCHHHHHHH
Confidence 88888888888888777776 6677777777777775321 1234567777777777777776
Q ss_pred HHh
Q 011376 185 LLG 187 (487)
Q Consensus 185 Ll~ 187 (487)
|.+
T Consensus 178 L~~ 180 (183)
T 3deo_A 178 LEG 180 (183)
T ss_dssp HHT
T ss_pred HHH
Confidence 654
No 91
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=7.6e-23 Score=172.91 Aligned_cols=125 Identities=26% Similarity=0.405 Sum_probs=95.2
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHH
Q 011376 61 SNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAA 140 (487)
Q Consensus 61 ~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~ 140 (487)
...|.||||.|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.+++++|++.++++ +..|.+|.||||+|+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAA 88 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHH
Confidence 345677888888888888888888887776544 777888888888888888888888877776 666777788888888
Q ss_pred HcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhC
Q 011376 141 RQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGA 188 (487)
Q Consensus 141 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~ 188 (487)
..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.
T Consensus 89 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 888888888888877776 66677777777777777777777777764
No 92
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=2e-23 Score=195.00 Aligned_cols=137 Identities=20% Similarity=0.264 Sum_probs=78.8
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCC-CCCCcHHHHHHH
Q 011376 63 SGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPR-SNGKNALHLAAR 141 (487)
Q Consensus 63 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpLh~A~~ 141 (487)
+|.||||.|+..|+.++++.|++ +.+++.. |..|.||||+|+..|+.+++++|+++++++ +..+ ..|.||||+|+.
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~ 120 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAG 120 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHH
Confidence 45556666666666666666655 5444332 555566666666666666666666655555 3333 456666666666
Q ss_pred cCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhc
Q 011376 142 QGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLA 221 (487)
Q Consensus 142 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~ 221 (487)
.|+.+++++|+++|+++ +.+|..|.||||+|+..++. ..+.||||+|+..|+.+++++|++
T Consensus 121 ~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~~------------------~~~~~~l~~a~~~g~~~iv~~L~~ 181 (244)
T 3ui2_A 121 YVRPEVVEALVELGADI-EVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEG 181 (244)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHTT------------------CCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHhc------------------cCCCCHHHHHHHcChHHHHHHHHH
Confidence 66666666666665555 45555666666666542221 235667777777777777776665
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=2.9e-23 Score=175.66 Aligned_cols=127 Identities=31% Similarity=0.414 Sum_probs=83.9
Q ss_pred hccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHH
Q 011376 24 EVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLI 103 (487)
Q Consensus 24 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 103 (487)
.+|.+|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~ 81 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQN--GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT-GYQNDSPLH 81 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CGGGCCHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCc-CCCCCCHHH
Confidence 4566677777777777777777777764 5666666777777777777777777777777776665433 666667777
Q ss_pred HHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhc
Q 011376 104 TAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKK 154 (487)
Q Consensus 104 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ 154 (487)
+|+..|+.+++++|++.++++ +..|..|.||||+|+..+..+++++|.+.
T Consensus 82 ~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 82 DAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 777777777777777666665 55666667777776666666665555444
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=6e-23 Score=173.71 Aligned_cols=126 Identities=25% Similarity=0.325 Sum_probs=79.8
Q ss_pred cCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHH
Q 011376 59 LKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHL 138 (487)
Q Consensus 59 ~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~ 138 (487)
.+|.+|+||||+|+..|+.+++++|++.|++++.. |..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHH
Confidence 45666777777777777777777777766665433 666666666666666666666666666655 5556666666666
Q ss_pred HHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHh
Q 011376 139 AARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLG 187 (487)
Q Consensus 139 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~ 187 (487)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..+..+++++|.+
T Consensus 83 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~ 130 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEK 130 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence 66666666666666666665 5556666666666665555555554443
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=1.4e-22 Score=180.51 Aligned_cols=139 Identities=20% Similarity=0.261 Sum_probs=124.8
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCC-CCCCcHHHHH
Q 011376 61 SNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPR-SNGKNALHLA 139 (487)
Q Consensus 61 ~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpLh~A 139 (487)
+.+|.||||.|+..|+.++++.|++ +.+++. .|..|.||||+|+..|+.+++++|+++++++ +..+ .+|+||||+|
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDA-VDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence 4578999999999999999999999 877755 4899999999999999999999999999988 5555 8899999999
Q ss_pred HHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHH
Q 011376 140 ARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNEL 219 (487)
Q Consensus 140 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~L 219 (487)
+..|+.+++++|+++|+++ +.+|.+|+||||+|++.++ ...+.+||++|+..|+.+++++|
T Consensus 118 ~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~~~~~~i~~~L 178 (183)
T 3deo_A 118 AGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVL 178 (183)
T ss_dssp HHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHHcCHHHHHHHH
Confidence 9999999999999999998 7899999999999986321 24578999999999999999999
Q ss_pred hc
Q 011376 220 LA 221 (487)
Q Consensus 220 l~ 221 (487)
.+
T Consensus 179 ~~ 180 (183)
T 3deo_A 179 EG 180 (183)
T ss_dssp HT
T ss_pred HH
Confidence 76
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=2.2e-22 Score=187.82 Aligned_cols=142 Identities=20% Similarity=0.225 Sum_probs=106.5
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHH
Q 011376 25 VNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLIT 104 (487)
Q Consensus 25 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 104 (487)
.+.+|.||||.|+..|+.++|+.|++ +.+++.+|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+
T Consensus 41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~ 117 (244)
T 3ui2_A 41 VVSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 117 (244)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHH
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence 34567788888888888888888877 556777777888888888888888888888888877766544777888888
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHH
Q 011376 105 AATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRL 184 (487)
Q Consensus 105 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~ 184 (487)
|+..|+.+++++|+++++++ +..|..|.||||+|+..+ ....+.||||+|+..|+.+++++
T Consensus 118 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~------------------~~~~~~~~l~~a~~~g~~~iv~~ 178 (244)
T 3ui2_A 118 AAGYVRPEVVEALVELGADI-EVEDERGLTALELAREIL------------------KTTPKGNPMQFGRRIGLEKVINV 178 (244)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHH------------------TTCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHH------------------hccCCCCHHHHHHHcChHHHHHH
Confidence 88888888888888887776 667777888888887522 12456788888888888888888
Q ss_pred HHhC
Q 011376 185 LLGA 188 (487)
Q Consensus 185 Ll~~ 188 (487)
|++.
T Consensus 179 L~~~ 182 (244)
T 3ui2_A 179 LEGQ 182 (244)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=6.1e-22 Score=190.57 Aligned_cols=145 Identities=21% Similarity=0.186 Sum_probs=114.7
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHHHhhCCccccc-----CCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCCcccCCCC
Q 011376 60 KSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKT-----LGQSNATPLITAATK---GHVDVLHVLLSKDPHLLKIPRSN 131 (487)
Q Consensus 60 ~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~ 131 (487)
....+.++||.|+..|+.+.++.|++.|++++.. .+..|.||||+|+.. |+.+++++|+++++++ +..|.+
T Consensus 147 ~~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~ 225 (301)
T 2b0o_E 147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAAD 225 (301)
T ss_dssp CCC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTT
T ss_pred ccCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCC
Confidence 3444567899999999999999999888887653 477888999999886 7889999999988877 777888
Q ss_pred CCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcC
Q 011376 132 GKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKK 211 (487)
Q Consensus 132 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~ 211 (487)
|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++++++ .|.||||+|+..|
T Consensus 226 G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g 297 (301)
T 2b0o_E 226 GNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWV 297 (301)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcC
Confidence 999999999999999999999998887 78888899999999999999999999887544 4789999998887
Q ss_pred cH
Q 011376 212 RI 213 (487)
Q Consensus 212 ~~ 213 (487)
+.
T Consensus 298 ~~ 299 (301)
T 2b0o_E 298 IS 299 (301)
T ss_dssp --
T ss_pred Cc
Confidence 64
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=2.9e-22 Score=184.14 Aligned_cols=134 Identities=28% Similarity=0.341 Sum_probs=103.4
Q ss_pred HHHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhh-CCcccccCCCCCC
Q 011376 21 VVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDH-YPELTKTLGQSNA 99 (487)
Q Consensus 21 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~ 99 (487)
.++..+..|.||||.|+..|+.++|+.|++. +.+++.+|..|.||||+|+..|+.+++++|++. |.+++.. |..|.
T Consensus 65 ~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~-d~~g~ 141 (222)
T 3ehr_A 65 YVAEQAESIDNPLHEAAKRGNLSWLRECLDN--RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ-NKLGD 141 (222)
T ss_dssp HHHHHEEEESCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCC-CTTSC
T ss_pred hccccccccccccccccccCcHHHHHHHHhC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcccc-CCCCC
Confidence 4556678888888888888888888888884 677888888888888888888888888888888 7776544 88888
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCcc
Q 011376 100 TPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQL 158 (487)
Q Consensus 100 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 158 (487)
||||+|+..|+.+++++|+++++++ +..|.+|.||||+|+..|+.++++.|++.+...
T Consensus 142 tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 142 TALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence 8888888888888888888888876 677888888888888888888888888877654
No 99
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=7.5e-22 Score=189.94 Aligned_cols=141 Identities=20% Similarity=0.220 Sum_probs=121.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCccc-----CCCCCCcHHHHHHHc---CCHHHHHHHhhcCCccccccCCCCCh
Q 011376 97 SNATPLITAATKGHVDVLHVLLSKDPHLLKI-----PRSNGKNALHLAARQ---GHVDVVKHILKKDTQLARHTDKKGQT 168 (487)
Q Consensus 97 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t 168 (487)
.+.++|+.|+..|+.+.++.|++.++++... .+..|.||||+|+.. |+.+++++|+++|+++ +.+|.+|+|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~T 228 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT 228 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCC
Confidence 3457899999999999999999999887332 588999999999997 8999999999999998 788999999
Q ss_pred HHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCC
Q 011376 169 ALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPF 246 (487)
Q Consensus 169 ~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~ 246 (487)
|||+|+..|+.+++++|++.+++ .+.+|..|+||||+|+..++.+++++|++ .|++ .|.||||+|+..++
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~-~ga~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQ-AQAG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHH------TTSSCCC-------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-hcCC------CCCChhHHHHhcCC
Confidence 99999999999999999998544 56789999999999999999999999999 6776 58999999998874
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.86 E-value=5.9e-22 Score=164.26 Aligned_cols=112 Identities=29% Similarity=0.459 Sum_probs=85.9
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHH
Q 011376 26 NELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITA 105 (487)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 105 (487)
+..|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.. |..|+||||+|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~tpL~~A 80 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSA 80 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTSCCHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc--CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHH
Confidence 45677888888888888888888874 5677777888888888888888888888888888776544 77788888888
Q ss_pred HHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHH
Q 011376 106 ATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAAR 141 (487)
Q Consensus 106 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~ 141 (487)
+..|+.+++++|+++++++ +..|.+|.||||+|..
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCC
T ss_pred HHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCC
Confidence 8888888888888887776 6677778888887743
No 101
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=1.7e-21 Score=161.44 Aligned_cols=110 Identities=25% Similarity=0.288 Sum_probs=77.0
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHH
Q 011376 62 NSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAAR 141 (487)
Q Consensus 62 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~ 141 (487)
..|.||||.|+..|+.+++++|++.+++++.. |..|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+.
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVY 82 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSC-CTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCcc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence 45667777777777777777777777766433 667777777777777777777777777665 5666677777777777
Q ss_pred cCCHHHHHHHhhcCCccccccCCCCChHHHHHH
Q 011376 142 QGHVDVVKHILKKDTQLARHTDKKGQTALHMAV 174 (487)
Q Consensus 142 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 174 (487)
.|+.+++++|+++++++ +.+|..|.||||+|.
T Consensus 83 ~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 83 EGHVSCVKLLLSKGADK-TVKGPDGLTAFEATD 114 (123)
T ss_dssp HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCC
T ss_pred cCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhC
Confidence 77777777777777665 566667777777763
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.84 E-value=3e-21 Score=177.32 Aligned_cols=128 Identities=30% Similarity=0.390 Sum_probs=58.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhc
Q 011376 131 NGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRK 210 (487)
Q Consensus 131 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~ 210 (487)
+|.||||+|+..|+.++++.|++.+.++ +.+|..|+||||+|+..|+.+++++|++..+...+.+|..|+||||+|+..
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~ 150 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH
T ss_pred ccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHc
Confidence 3444444444444444444444444443 344444455555555555555555554443333344455555555555555
Q ss_pred CcHHHHHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcCcHh
Q 011376 211 KRIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNGAVR 264 (487)
Q Consensus 211 ~~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~~~ 264 (487)
|+.+++++|++ .|++++.+|..|+||||+|+..+ ..++++.+.+.++..
T Consensus 151 ~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~----~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 151 GYADIVQLLLA-KGARTDLRNIEKKLAFDMATNAA----CASLLKKKQGTDAVR 199 (222)
T ss_dssp TCHHHHHHHHH-HTCCSCCCCTTSCCHHHHCCSHH----HHHHHC---------
T ss_pred CCHHHHHHHHH-cCCCCccccCCCCCHHHHhcchh----HHHHHHHHhccchhh
Confidence 55555555554 35555555555555555554443 444555555444443
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=4.1e-20 Score=175.71 Aligned_cols=120 Identities=24% Similarity=0.290 Sum_probs=71.7
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCc-----ccCCCCCCcHHHHHHHc---CCHHHHHHHhhcCCccccccCCCCChHHH
Q 011376 100 TPLITAATKGHVDVLHVLLSKDPHLL-----KIPRSNGKNALHLAARQ---GHVDVVKHILKKDTQLARHTDKKGQTALH 171 (487)
Q Consensus 100 tpL~~A~~~g~~~~v~~Ll~~~~~~~-----~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh 171 (487)
++|+.|+..|+.+.+..+++.+.++. +..+..|.||||+|+.. |+.+++++|+++|+++ +.+|..|+||||
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh 210 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHH
Confidence 45666666666666666666655531 22345566666666665 5666666666666665 555666666666
Q ss_pred HHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhc
Q 011376 172 MAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLA 221 (487)
Q Consensus 172 ~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~ 221 (487)
+|+..|+.+++++|+++++ ..+.+|..|+||||+|+..|+.+++++|++
T Consensus 211 ~A~~~g~~~~v~~Ll~~ga-d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~ 259 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLRGKA-SIEIANESGETPLDIAKRLKHEHCEELLTQ 259 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCC-CCCCccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 6666666666666666533 344456666666666666666666666665
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=7.1e-20 Score=174.10 Aligned_cols=194 Identities=18% Similarity=0.174 Sum_probs=145.1
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHH
Q 011376 60 KSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLA 139 (487)
Q Consensus 60 ~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A 139 (487)
.|..+.++++.+...|+..+.+++...-+.........+....+ ....-..+++...........+....++|+.|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 46678889999999999888777655433321111111111111 11111122333322221122222345799999
Q ss_pred HHcCCHHHHHHHhhcCCccc-----cccCCCCChHHHHHHhC---CCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcC
Q 011376 140 ARQGHVDVVKHILKKDTQLA-----RHTDKKGQTALHMAVKG---ISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKK 211 (487)
Q Consensus 140 ~~~g~~~~v~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~---~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~ 211 (487)
+..|+.+.+..+++.|.++. +..|..|+||||+|+.. |+.+++++|++++.+ .+.+|..|+||||+|+..|
T Consensus 138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh~A~~~g 216 (278)
T 1dcq_A 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLTD 216 (278)
T ss_dssp HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHHHTT
T ss_pred hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHcC
Confidence 99999999999999998853 34588899999999998 899999999998654 5678999999999999999
Q ss_pred cHHHHHHHhccCCcCccccccCCCCHHhHHhhCCCChhhHHHHHHHHhcCcH
Q 011376 212 RIEIVNELLALSDIDVNILTKDRKTALDIAEGLPFSEETAELKECLERNGAV 263 (487)
Q Consensus 212 ~~~iv~~Ll~~~g~d~~~~n~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g~~ 263 (487)
+.+++++|++ .|+|++.+|..|+||||+|+..+ +.+++++|+++|+.
T Consensus 217 ~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~----~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 217 NAECLKLLLR-GKASIEIANESGETPLDIAKRLK----HEHCEELLTQALSG 263 (278)
T ss_dssp CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTT----CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcC----CHHHHHHHHHcCCC
Confidence 9999999999 89999999999999999999999 88999999998874
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=1.4e-19 Score=141.96 Aligned_cols=92 Identities=39% Similarity=0.630 Sum_probs=70.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHH
Q 011376 28 LGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAAT 107 (487)
Q Consensus 28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 107 (487)
+|.||||+|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|+++|++++.. |..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHH
Confidence 477888888888888888888874 6677777778888888888888888888888887776544 7777788888888
Q ss_pred cCCHHHHHHHHhcCC
Q 011376 108 KGHVDVLHVLLSKDP 122 (487)
Q Consensus 108 ~g~~~~v~~Ll~~~~ 122 (487)
.|+.+++++|++.|+
T Consensus 78 ~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGA 92 (93)
T ss_dssp TTCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHcCC
Confidence 888888888777765
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=1.1e-19 Score=178.96 Aligned_cols=144 Identities=25% Similarity=0.271 Sum_probs=67.2
Q ss_pred CCCcHHHHHHHc-CcHHHHHHHHhhCCcccccCC--CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHH
Q 011376 63 SGLDPLHIAASQ-GYQDIVQVLLDHYPELTKTLG--QSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLA 139 (487)
Q Consensus 63 ~g~tpLh~A~~~-g~~~iv~~Ll~~~~~~~~~~~--~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A 139 (487)
.+.|+||.|+.. |+.++++.|+++|++++.. + ..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A 275 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHA 275 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence 344555555555 5555555555555554433 3 44555555555555555555555555554 44555555555555
Q ss_pred HHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCc--ccccCcCCCCCcHHHHHHh
Q 011376 140 ARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADS--AIAMLPDKFGNTALHVATR 209 (487)
Q Consensus 140 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~--~~~~~~d~~g~T~Lh~A~~ 209 (487)
+..|+.+++++|+++|+++ +..|.+|.||||+|+..++.+++++|+..+. ......+..+.|+++++..
T Consensus 276 ~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 276 TILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred HHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence 5555555555555555554 4555555555555555555555555553321 1111234445556555544
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=1.5e-19 Score=186.41 Aligned_cols=124 Identities=20% Similarity=0.206 Sum_probs=83.6
Q ss_pred cHHHHHHHcCCHHHHHHHHHhccccccccC------CCCCCcHHHHHHH---cCcHHHHHHHHhhCCcccccCCCCCCcH
Q 011376 31 TALFIAAKNGHLDVVKELLQYMTKEGVSLK------SNSGLDPLHIAAS---QGYQDIVQVLLDHYPELTKTLGQSNATP 101 (487)
Q Consensus 31 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~------~~~g~tpLh~A~~---~g~~~iv~~Ll~~~~~~~~~~~~~g~tp 101 (487)
+.||.|+..|+.+.|+.|++. +.+++.. |..|.||||+||. .|+.+++++|+++|++++.. |..|+||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~--g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~-d~~g~Tp 210 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADGNTA 210 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHT--TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCC-CSSSCCH
T ss_pred HHHHHHHhccCHHHHHHHHhh--cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCcc-CCCCCcH
Confidence 557777777777777777764 4555544 5667777777755 66777777777777766544 6667777
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCcc
Q 011376 102 LITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVVKHILKKDTQL 158 (487)
Q Consensus 102 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 158 (487)
||+|+..|+.+++++|+++|+++ +..|.+|.||||+|+..|+.+++++|+++|++.
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 266 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAGT 266 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 77777777777777777777665 566667777777777777777777777777665
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.80 E-value=1.2e-19 Score=178.70 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=109.6
Q ss_pred CCCCCcHHHHHHHc-CCHHHHHHHHhcCCCCcccCC--CCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHH
Q 011376 95 GQSNATPLITAATK-GHVDVLHVLLSKDPHLLKIPR--SNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALH 171 (487)
Q Consensus 95 ~~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh 171 (487)
+..+.||||.|+.. |+.++++.|++.++++ +..+ ..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh 273 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLH 273 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence 44567899999999 9999999999999887 5566 78999999999999999999999999988 788999999999
Q ss_pred HHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhcc--CCcCccccccCCCCHHhHHhhCC
Q 011376 172 MAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLAL--SDIDVNILTKDRKTALDIAEGLP 245 (487)
Q Consensus 172 ~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~--~g~d~~~~n~~G~t~L~~A~~~~ 245 (487)
+|+..|+.+++++|++++.+ .+.+|..|+||||+|+..++.+++++|++. .+.+....+..+.|+++++....
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 99999999999999998544 567799999999999999999999999863 23445567788899999887754
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=4.1e-19 Score=139.23 Aligned_cols=92 Identities=37% Similarity=0.658 Sum_probs=70.6
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc
Q 011376 63 SGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQ 142 (487)
Q Consensus 63 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~ 142 (487)
+|+||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.+++++|++.++++ +.+|.+|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence 3778888888888888888888888776544 777888888888888888888888877776 66777788888888888
Q ss_pred CCHHHHHHHhhcCC
Q 011376 143 GHVDVVKHILKKDT 156 (487)
Q Consensus 143 g~~~~v~~Ll~~~~ 156 (487)
|+.+++++|+++|+
T Consensus 79 ~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 79 GHLEVVKLLLEAGA 92 (93)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCC
Confidence 88888888877765
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=5e-19 Score=182.42 Aligned_cols=128 Identities=23% Similarity=0.276 Sum_probs=104.3
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCcccC------CCCCCcHHHHHHH---cCCHHHHHHHhhcCCccccccCCCCChH
Q 011376 99 ATPLITAATKGHVDVLHVLLSKDPHLLKIP------RSNGKNALHLAAR---QGHVDVVKHILKKDTQLARHTDKKGQTA 169 (487)
Q Consensus 99 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~------~~~g~tpLh~A~~---~g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 169 (487)
.+.||.|+..|+.+.++.|++.++++ +.. +..|.||||+|+. .|+.+++++|+++|+++ +.+|.+|+||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~Tp 210 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTA 210 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCCH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCcH
Confidence 36788888888888888888888776 333 6788999999966 88899999999999887 7888889999
Q ss_pred HHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhccCCcCcccc
Q 011376 170 LHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLALSDIDVNIL 230 (487)
Q Consensus 170 Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~d~~~~ 230 (487)
||+|+..|+.+++++|++++++ .+.+|..|+||||+|+..|+.+++++|++ .|++++..
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~~~ 269 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQ-AQAGTFAF 269 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCC-CSCCCTTCCCHHHHHHHTTCHHHHHHHHH-TCC-----
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-hCCCCCCC
Confidence 9999999999999999988544 56678899999999999999999999998 78888874
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=3.5e-19 Score=145.50 Aligned_cols=107 Identities=31% Similarity=0.444 Sum_probs=63.0
Q ss_pred ccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHH
Q 011376 25 VNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLIT 104 (487)
Q Consensus 25 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 104 (487)
+|.+|.||||.|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-d~~g~tpl~~ 81 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR-SKDGNTPEHL 81 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTT--TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCC-CTTCCCTTHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCCHHHH
Confidence 455666666666666666666666653 4555556666666666666666666666666666655433 5556666666
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccCCCCCCcH
Q 011376 105 AATKGHVDVLHVLLSKDPHLLKIPRSNGKNA 135 (487)
Q Consensus 105 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp 135 (487)
|+..|+.+++++|+++|+++ +..+..|.+|
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~ 111 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADV-NARSWGSSHH 111 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSH-HHHSCCCC--
T ss_pred HHHCCCHHHHHHHHHcCCCC-CcCCcccccc
Confidence 66666666666666666555 4445555544
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.77 E-value=8e-19 Score=143.34 Aligned_cols=109 Identities=34% Similarity=0.436 Sum_probs=92.1
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHhCCcccccCcCCCCCcHHHH
Q 011376 127 IPRSNGKNALHLAARQGHVDVVKHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLGADSAIAMLPDKFGNTALHV 206 (487)
Q Consensus 127 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~~~~~~~~~~d~~g~T~Lh~ 206 (487)
.+|.+|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..++.+++++|++.+.+ .+.+|..|+||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHH
Confidence 45778888888888888888888888888886 77788899999999999999999999888544 55678899999999
Q ss_pred HHhcCcHHHHHHHhccCCcCccccccCCCCHH
Q 011376 207 ATRKKRIEIVNELLALSDIDVNILTKDRKTAL 238 (487)
Q Consensus 207 A~~~~~~~iv~~Ll~~~g~d~~~~n~~G~t~L 238 (487)
|+..++.+++++|++ .|+++|.++..|.+|-
T Consensus 82 A~~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDA-KGADVNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHT-TSSSHHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHH-cCCCCCcCCccccccc
Confidence 999999999999998 7999999999998874
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.70 E-value=3.9e-17 Score=132.20 Aligned_cols=95 Identities=24% Similarity=0.327 Sum_probs=73.8
Q ss_pred HHHHhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCC
Q 011376 20 AVVEEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNA 99 (487)
Q Consensus 20 ~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~ 99 (487)
......|.+|.||||.|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|+++|++++.. |..|.
T Consensus 15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~ 91 (110)
T 2zgd_A 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMAN--GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGK 91 (110)
T ss_dssp -------CCHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSC
T ss_pred CcccccCCccchHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-ccCCC
Confidence 44566778888888888888888888888885 6778888888888888888888888888888888886544 78888
Q ss_pred cHHHHHHHcCCHHHHHHH
Q 011376 100 TPLITAATKGHVDVLHVL 117 (487)
Q Consensus 100 tpL~~A~~~g~~~~v~~L 117 (487)
||||+|+..|+.+++++|
T Consensus 92 tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 92 TAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHh
Confidence 888888888888888776
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.65 E-value=4.6e-16 Score=125.83 Aligned_cols=92 Identities=25% Similarity=0.375 Sum_probs=62.9
Q ss_pred ccCCCCCCcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHH
Q 011376 58 SLKSNSGLDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATKGHVDVLHVLLSKDPHLLKIPRSNGKNALH 137 (487)
Q Consensus 58 ~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 137 (487)
...|.+|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.+++++|+++++++ +..|..|.||||
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~-d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~ 95 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFD 95 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHH
Confidence 344566777777777777777777777777766544 667777777777777777777777776665 556667777777
Q ss_pred HHHHcCCHHHHHHH
Q 011376 138 LAARQGHVDVVKHI 151 (487)
Q Consensus 138 ~A~~~g~~~~v~~L 151 (487)
+|+..|+.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 77777777777654
No 115
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=56.16 E-value=48 Score=27.87 Aligned_cols=129 Identities=12% Similarity=0.077 Sum_probs=73.0
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhccccccccCCCCC-CcHHHHHHHcCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHc
Q 011376 30 ETALFIAAKNGHLDVVKELLQYMTKEGVSLKSNSG-LDPLHIAASQGYQDIVQVLLDHYPELTKTLGQSNATPLITAATK 108 (487)
Q Consensus 30 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g-~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 108 (487)
++-+-+|...|+++....+.+... +..- ...=..|...|+.++++.-..+-.++.. .+.+....
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~--------L~~Ly~~t 73 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASLAEMIYQTQHSFDK--------LSFLYLVT 73 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHH--------HHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHH--------HHHHHHHh
Confidence 456778888888888777765310 1111 1233556677888888887777665543 25555667
Q ss_pred CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHH-HHHhhcCCccccccCCCCChHHHHHHhCCCHHHHHHHHh
Q 011376 109 GHVDVLHVLLSKDPHLLKIPRSNGKNALHLAARQGHVDVV-KHILKKDTQLARHTDKKGQTALHMAVKGISSEVVRLLLG 187 (487)
Q Consensus 109 g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v-~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~e~v~~Ll~ 187 (487)
|+.+-++.+.+.. ....+-....+.+...|+++-. +.|.+.+.-. -+..+|..+|..++.+.+++
T Consensus 74 g~~e~L~kla~iA-----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~---------eA~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 74 GDVNKLSKMQNIA-----QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLP---------LAYAVAKANGDEAAASAFLE 139 (177)
T ss_dssp TCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH---------HHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCChH---------HHHHHHHHcCcHHHHHHHHH
Confidence 7777666664331 1112223456666667766543 3333332211 23445566777777777664
No 116
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=50.34 E-value=41 Score=24.06 Aligned_cols=27 Identities=11% Similarity=0.495 Sum_probs=16.5
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHH
Q 011376 425 RWAAIFITAVGGVTMVGILSFLTYYAV 451 (487)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (487)
....|+..+++++++++++..+++-.+
T Consensus 9 n~~~Iv~gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777776665554433
No 117
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=48.89 E-value=23 Score=23.21 Aligned_cols=26 Identities=15% Similarity=0.301 Sum_probs=16.8
Q ss_pred CCchHHHHHHHhhhhHHHHHHHHHHH
Q 011376 423 HNRWAAIFITAVGGVTMVGILSFLTY 448 (487)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (487)
...|..|++.+++++.+++++.+.+|
T Consensus 6 ~vp~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777877777665555543
No 118
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=46.40 E-value=27 Score=22.96 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=16.7
Q ss_pred CCchHHHHHHHhhhhHHHHHHHHHHH
Q 011376 423 HNRWAAIFITAVGGVTMVGILSFLTY 448 (487)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (487)
...|..|++.+++++.+++++.+.+|
T Consensus 9 ~vp~wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777665555543
No 119
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=43.30 E-value=11 Score=35.69 Aligned_cols=193 Identities=12% Similarity=0.101 Sum_probs=92.7
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhccccc-cccCCCCCCcHHHHHHHcCcHHHHHHHHhh--CCcccccCCCCCCcHHH
Q 011376 27 ELGETALFIAAKNGHLDVVKELLQYMTKEG-VSLKSNSGLDPLHIAASQGYQDIVQVLLDH--YPELTKTLGQSNATPLI 103 (487)
Q Consensus 27 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~-~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~--~~~~~~~~~~~g~tpL~ 103 (487)
..|.-.|-.....++.+-.+.+.+...+.. --..|..|+..+.-....++.+....+++. |.-..-..+..|.-.+.
T Consensus 35 q~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQ 114 (351)
T 3gvo_A 35 QHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQ 114 (351)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHH
T ss_pred CcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHH
Confidence 334444444555555555555444322211 123577777777777777777665555543 22222234666666666
Q ss_pred HHHHcCCHHHHHHHHhc-CCCC-cccCCCCCCcHHHHHHHcCCHHHHHHHhhcCCc--cccccCCCCChHHHHHHhCCCH
Q 011376 104 TAATKGHVDVLHVLLSK-DPHL-LKIPRSNGKNALHLAARQGHVDVVKHILKKDTQ--LARHTDKKGQTALHMAVKGISS 179 (487)
Q Consensus 104 ~A~~~g~~~~v~~Ll~~-~~~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~--~~~~~d~~g~t~Lh~A~~~~~~ 179 (487)
.+......+-...+++. .+.. .-..|..|...+..+...+..+..+.+++.-.. ..-..+..|...+.-+.+....
T Consensus 115 k~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~ 194 (351)
T 3gvo_A 115 KALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTA 194 (351)
T ss_dssp HHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCH
T ss_pred HHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCH
Confidence 66666655444444332 1111 112345555555555544443333333322111 0112344455555444444333
Q ss_pred H----HHHHHHhCCcccccCcCCCCCcHHHHHHhcCcHHHHHHHhc
Q 011376 180 E----VVRLLLGADSAIAMLPDKFGNTALHVATRKKRIEIVNELLA 221 (487)
Q Consensus 180 e----~v~~Ll~~~~~~~~~~d~~g~T~Lh~A~~~~~~~iv~~Ll~ 221 (487)
+ +++.|... ...-..|..|+-.+......+.++..+.+++
T Consensus 195 ~~~~~ii~~l~~~--~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~ 238 (351)
T 3gvo_A 195 EQTLPILEELHQH--TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVS 238 (351)
T ss_dssp HHHHHHHHHHHTT--HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhh--HHhcCCCchHHHHHHHHHHhCchhhHHHHHH
Confidence 2 33333322 1222357778877777777776666555554
No 120
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=41.09 E-value=41 Score=20.81 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=15.9
Q ss_pred CchHHHHHHHhhhhHHHHHHHHHHH
Q 011376 424 NRWAAIFITAVGGVTMVGILSFLTY 448 (487)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (487)
..|..|.+.+++++.+++++.+.+|
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777766665555443
No 121
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=39.28 E-value=79 Score=29.56 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=17.3
Q ss_pred ccccccchhHHHHHHHHHHHHhhc
Q 011376 315 LYNATNSVTVVAVLFATVAFASIF 338 (487)
Q Consensus 315 l~~t~~s~~vVa~Liatvtf~a~~ 338 (487)
+.+....++++|++.+-.||-||+
T Consensus 275 ~N~~mk~LTiit~IflP~T~IaGi 298 (339)
T 4ev6_A 275 MNQIMKILTMVTTIFAVPMWITGI 298 (339)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445688888888888887764
No 122
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=36.50 E-value=14 Score=23.10 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=17.2
Q ss_pred CchHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 011376 424 NRWAAIFITAVGGVTMVGILSFLTYYAVI 452 (487)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (487)
+...+|..-+++++..++++...+++.+.
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~R 35 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYVR 35 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhh
Confidence 44556777777766666665555444443
No 123
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=32.98 E-value=48 Score=31.47 Aligned_cols=184 Identities=11% Similarity=0.084 Sum_probs=83.7
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHhcccccc-ccCCCCCCcHHHHHHHcCcHHHHHHHHhhC--CcccccCCCCCCcHH
Q 011376 26 NELGETALFIAAKNGHLDVVKELLQYMTKEGV-SLKSNSGLDPLHIAASQGYQDIVQVLLDHY--PELTKTLGQSNATPL 102 (487)
Q Consensus 26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~-~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL 102 (487)
|.+|.-.+--+...++.+..+.+.+...+.-. -..|..|+..+.-....+..+..+.+++.- .-.....+..|.-.+
T Consensus 39 d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVl 118 (369)
T 3k49_A 39 DQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVI 118 (369)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHH
T ss_pred CCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHH
Confidence 34444555556666666655555554322211 235777887777777777776555555531 111112355555555
Q ss_pred HHHHHcCCHHHHHHHHhc-CCCC-cccCCCCCCcHHHHHHHcCCHH----HHHHHhhcCCccccccCCCCChHHHHHHhC
Q 011376 103 ITAATKGHVDVLHVLLSK-DPHL-LKIPRSNGKNALHLAARQGHVD----VVKHILKKDTQLARHTDKKGQTALHMAVKG 176 (487)
Q Consensus 103 ~~A~~~g~~~~v~~Ll~~-~~~~-~~~~~~~g~tpLh~A~~~g~~~----~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 176 (487)
..+......+-...+++. .+.. .-..|..|...+......+..+ +++.+..+... -..++.|...+.-+...
T Consensus 119 Qk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~--ls~~~~Gs~Vvq~~l~~ 196 (369)
T 3k49_A 119 QKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYH--LSTHSYGCRVIQRLLEF 196 (369)
T ss_dssp HHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHH--HHTSTTHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHH--HhCCCccCcHHHHHHHh
Confidence 555555554433333322 1111 1123445554444444443322 22222211111 12345555555555555
Q ss_pred CCHHHHHHHHhCCc--ccccCcCCCCCcHHHHHHhcC
Q 011376 177 ISSEVVRLLLGADS--AIAMLPDKFGNTALHVATRKK 211 (487)
Q Consensus 177 ~~~e~v~~Ll~~~~--~~~~~~d~~g~T~Lh~A~~~~ 211 (487)
+..+.-+.+++.-. ...-..|..|+-.+..+...+
T Consensus 197 ~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~ 233 (369)
T 3k49_A 197 GSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQD 233 (369)
T ss_dssp SCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcC
Confidence 55544444443211 111123555555555444433
No 124
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=31.74 E-value=20 Score=34.02 Aligned_cols=233 Identities=9% Similarity=0.061 Sum_probs=120.3
Q ss_pred HhccCCCCcHHHHHHHcCCHHHHHHHHHhccccccc-cCCCCCCcHHHHHHHcCcHHHHHHHHhhC-C-cccccCCCCCC
Q 011376 23 EEVNELGETALFIAAKNGHLDVVKELLQYMTKEGVS-LKSNSGLDPLHIAASQGYQDIVQVLLDHY-P-ELTKTLGQSNA 99 (487)
Q Consensus 23 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~-~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~-~-~~~~~~~~~g~ 99 (487)
-..|..|+..+--....|+.+....+++...+.-.. ..+..|.-.+.-+......+-...+++.- + -..-..|..|+
T Consensus 67 L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn 146 (351)
T 3gvo_A 67 LMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGN 146 (351)
T ss_dssp HHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHH
T ss_pred HHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhh
Confidence 346888888888888888888777777654332222 35667777777777666655444444421 1 11122366666
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCC-C-cccCCCCCCcHHHHHHHcCCHH----HHHHHhhcCCccccccCCCCChHHHHH
Q 011376 100 TPLITAATKGHVDVLHVLLSKDPH-L-LKIPRSNGKNALHLAARQGHVD----VVKHILKKDTQLARHTDKKGQTALHMA 173 (487)
Q Consensus 100 tpL~~A~~~g~~~~v~~Ll~~~~~-~-~~~~~~~g~tpLh~A~~~g~~~----~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 173 (487)
..+......+..+..+.+++.-.. . .-..+..|...+..+......+ +++.|..+... -..|..|.-.+..+
T Consensus 147 ~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~--L~~d~~Gn~ViQ~~ 224 (351)
T 3gvo_A 147 HVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQ--LVQDQYGNYVIQHV 224 (351)
T ss_dssp HHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHH--HHTSTTHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHh--cCCCchHHHHHHHH
Confidence 666666655544433333332111 1 0112345555555555544432 33444332222 24567777777777
Q ss_pred HhCCCHHHHHHHHhCCc--ccccCcCCCCCcHHHHHHhcCcHH----HHHHHhccC-C----cCccccccCCCCHHhHHh
Q 011376 174 VKGISSEVVRLLLGADS--AIAMLPDKFGNTALHVATRKKRIE----IVNELLALS-D----IDVNILTKDRKTALDIAE 242 (487)
Q Consensus 174 ~~~~~~e~v~~Ll~~~~--~~~~~~d~~g~T~Lh~A~~~~~~~----iv~~Ll~~~-g----~d~~~~n~~G~t~L~~A~ 242 (487)
.+.+..+..+.+++.-. ...-..+..|...+.-+...+..+ +++.++... | ...-..|..|+-.+..+.
T Consensus 225 l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L 304 (351)
T 3gvo_A 225 LEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMI 304 (351)
T ss_dssp HHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHH
T ss_pred HHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHH
Confidence 77776665555554311 111124566666666665555443 444444311 0 112246777777776665
Q ss_pred hCCCChhhHHHHHHH
Q 011376 243 GLPFSEETAELKECL 257 (487)
Q Consensus 243 ~~~~~~~~~~i~~~L 257 (487)
..........+.+.+
T Consensus 305 ~~~~~~~r~~i~~~i 319 (351)
T 3gvo_A 305 DMAEPAQRKIIMHKI 319 (351)
T ss_dssp HHCCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHH
Confidence 554333333344433
No 125
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=31.03 E-value=54 Score=30.75 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccee
Q 011376 397 INKLMWLASICTSVAFTSSSYIV 419 (487)
Q Consensus 397 ~~~~~~~~~~~~~~af~~~~~~v 419 (487)
.+.+..++.+++...|.+|+|=+
T Consensus 279 mk~LTiit~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 279 MKILTMVTTIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHHHHSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhccC
Confidence 34466778888889999999843
No 126
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=30.61 E-value=9.6 Score=23.92 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=16.0
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 011376 425 RWAAIFITAVGGVTMVGILSFLTYYAVI 452 (487)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (487)
...+|..-+++++.+++++...+++.+.
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~R 36 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIGLFMR 36 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEeehhHHHHHHHHHHHHHHHHhh
Confidence 3445666667766666665555544444
No 127
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=28.99 E-value=1e+02 Score=29.10 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=19.4
Q ss_pred hccccccchhHHHHHHHHHHHHhhc
Q 011376 314 GLYNATNSVTVVAVLFATVAFASIF 338 (487)
Q Consensus 314 ~l~~t~~s~~vVa~Liatvtf~a~~ 338 (487)
.+.+....++++|++++-.||-||+
T Consensus 298 ~~N~imk~LTiit~IflP~T~IaGi 322 (363)
T 2iub_A 298 KTNEVMKVLTIIATIFMPLTFIAGI 322 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555799999999999998875
No 128
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=28.93 E-value=1.1e+02 Score=18.98 Aligned_cols=27 Identities=11% Similarity=0.495 Sum_probs=15.1
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHH
Q 011376 425 RWAAIFITAVGGVTMVGILSFLTYYAV 451 (487)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (487)
...+++..+++++++++++....|-.+
T Consensus 8 n~~~Iv~gvi~~ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 8 DILVVLLSVMGAILLIGLAALLIWKLL 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeehHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666555544333
No 129
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=27.69 E-value=2.6e+02 Score=23.86 Aligned_cols=22 Identities=5% Similarity=0.005 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHhhccCCCC
Q 011376 322 VTVVAVLFATVAFASIFTLPGG 343 (487)
Q Consensus 322 ~~vVa~Liatvtf~a~~~~PGg 343 (487)
+.+.++|++-.++-+.+.+|.+
T Consensus 23 ~alfaAliavla~i~~Ipip~~ 44 (198)
T 4dve_A 23 SAFMTAFIIILGFLPGIPIGFI 44 (198)
T ss_dssp HHHHHHHHHHHTTSCCBCCSSS
T ss_pred HHHHHHHHHHHHHhccCCCCCC
Confidence 4556667666666656777754
No 130
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=21.19 E-value=66 Score=19.30 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=14.3
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 011376 33 LFIAAKNGHLDVVKELLQ 50 (487)
Q Consensus 33 Lh~Aa~~g~~~~v~~Ll~ 50 (487)
+..||..|+.+.++.|=.
T Consensus 17 iyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 578888899998887754
Done!