BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011378
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 182 RNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEAD---------DLFNEML 232
+ G VLEAL++ DE G + YN +L A+ TE+ D+F +M+
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97
Query: 233 ERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEME 292
V P+ TFT + A ++ M I+P + +Y + GFC+ G+ +
Sbjct: 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157
Query: 293 KANKLWADM 301
KA ++ A M
Sbjct: 158 KAYEVDAHM 166
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 11/167 (6%)
Query: 252 KDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGE----------MEKANKLWADM 301
K G++ +AL L+D + ++ YN L+ C + E + + ++ M
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQM 96
Query: 302 ISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDA 361
I K+ PN ++ + AF + +M GI+P L S + G+CR GDA
Sbjct: 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156
Query: 362 SKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMEN 408
KA E + MV V P+ L+ + +N DK + + ++ +
Sbjct: 157 DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD 203
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 324 GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDA----------SKADEFLSKMVS 373
G V EA RL+ E G++ + N ++ C +A S+ + +M+
Sbjct: 40 GDVLEALRLYDEARRNGVQLSQYHYNVLLY-VCSLAEAATESSPNPGLSRGFDIFKQMIV 98
Query: 374 EGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQG 429
+ V P+ ++ V +++ + AF +V +M+ G+ P + +Y L GFCR+G
Sbjct: 99 DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG 154
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 26 VYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAK 85
V P+ T+ + E AF ++ M G++P + +Y + G C+KG D+A
Sbjct: 101 VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 160
Query: 86 EV 87
EV
Sbjct: 161 EV 162
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 77 KKGRCDRAKEVLDEMLQMGLSPDTATYNTLL---------VESCRKENMSEAEEIFCEMS 127
KKG A + DE + G+ YN LL ES +S +IF +M
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97
Query: 128 RRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNG 184
V P+ +F+ + + A ++MK+ G+ P Y + G+CR G
Sbjct: 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG 154
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Query: 182 RNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEAD---------DLFNEML 232
+ G VLEAL++ DE G + YN +L A+ TE+ D+F + +
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQXI 97
Query: 233 ERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEME 292
V P+ TFT + A + I+P + +Y + GFC+ G+ +
Sbjct: 98 VDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDAD 157
Query: 293 KA 294
KA
Sbjct: 158 KA 159
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 11/167 (6%)
Query: 252 KDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGE----------MEKANKLWADM 301
K G++ +AL L+D + ++ YN L+ C + E + + ++
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQX 96
Query: 302 ISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDA 361
I K+ PN ++ + AF + GI+P L S + G+CR GDA
Sbjct: 97 IVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDA 156
Query: 362 SKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMEN 408
KA E + V V P+ L+ +N DK + + ++ +
Sbjct: 157 DKAYEVDAHXVESEVVPEEPELAALLKVSXDTKNADKVYKTLQRLRD 203
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 321 CSM-GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDA----------SKADEFLS 369
CS G V EA RL+ E G++ + N ++ C +A S+ +
Sbjct: 36 CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLY-VCSLAEAATESSPNPGLSRGFDIFK 94
Query: 370 KMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQG 429
+ + + V P+ ++ V +++ + AF V + + G+ P + +Y L GFCR+G
Sbjct: 95 QXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKG 154
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 26 VYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAK 85
V P+ T+ + E AF + G++P + +Y + G C+KG D+A
Sbjct: 101 VVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADKAY 160
Query: 86 EV 87
EV
Sbjct: 161 EV 162
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 9/117 (7%)
Query: 77 KKGRCDRAKEVLDEMLQMGLSPDTATYNTLL---------VESCRKENMSEAEEIFCEMS 127
KKG A + DE + G+ YN LL ES +S +IF +
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQXI 97
Query: 128 RRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNG 184
V P+ +F+ + + A ++ K+ G+ P Y + G+CR G
Sbjct: 98 VDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKG 154
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 8/125 (6%)
Query: 33 YNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDR----AKEVL 88
YN ++ + R+G +E ++ + GL P + +Y + + + GR D+ + L
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM---GRQDQDAGTIERCL 224
Query: 89 DEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLI-GIFSR 147
++M Q GL LL E R + ++ S P V+ S L+ ++++
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
Query: 148 NGQLD 152
+G++
Sbjct: 285 DGRVS 289
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 418 YNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLIN 458
YN ++ G+ RQG + +L+ + + GL PD +Y +
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
>pdb|2WWX|B Chain B, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 217
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 21/116 (18%)
Query: 194 DEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKD 253
+ MLEKG + + L+ + K L E DDL E+ ++ + P Y + G D
Sbjct: 41 NSMLEKGNISGYLKAANELHKFMKEKNLKE-DDLRPELSDKTISPKGYAILQSLWGAASD 99
Query: 254 GNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPN 309
+ A +T+ +++P +V+ NK+ A + K+SPN
Sbjct: 100 YSRAAA-----TLTESTVEPGLVSA---------------VNKMSAFFMDCKLSPN 135
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 67 TYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTA-TYNTLLVESCRKENMSEAEEIFCE 125
Y +L N L +KG A++ + L+ L P A + N L + N+ EA ++
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLY-- 328
Query: 126 MSRRG--VAPDIVS-FSTLIGIFSRNGQLDRALMYFRE 160
R+ V P+ + S L + + G+L ALM+++E
Sbjct: 329 --RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
>pdb|3N6O|A Chain A, Crystal Structure Of The Gef And P4m Domain Of DrraSIDM
FROM Legionella Pneumophila
pdb|3N6O|B Chain B, Crystal Structure Of The Gef And P4m Domain Of DrraSIDM
FROM Legionella Pneumophila
Length = 311
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 21/114 (18%)
Query: 196 MLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGN 255
MLEKG + + L+ + K L E DDL E+ ++ + P Y + G D +
Sbjct: 23 MLEKGNISGYLKAANELHKFMKEKNLKE-DDLRPELSDKTISPKGYAILQSLWGAASDYS 81
Query: 256 MNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPN 309
A +T+ +++P +V+ NK+ A + K+SPN
Sbjct: 82 RAAA-----TLTESTVEPGLVSA---------------VNKMSAFFMDCKLSPN 115
>pdb|3JZA|B Chain B, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
Length = 197
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 21/116 (18%)
Query: 194 DEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKD 253
+ MLEKG + + L+ + K L E DDL E+ ++ + P Y + G D
Sbjct: 21 NSMLEKGNISGYLKAANELHKFMKEKNLKE-DDLRPELSDKTISPKGYAILQSLWGAASD 79
Query: 254 GNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPN 309
+ A +T+ +++P +V+ NK+ A + K+SPN
Sbjct: 80 YSRAAA-----TLTESTVEPGLVSA---------------VNKMSAFFMDCKLSPN 115
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 384 NTLINGFVREENMDKAFALVSKMENQGLVPDVIT 417
+ L N + E M A+ L+ K++++GL P V+T
Sbjct: 99 SILFNSYPEAERMPGAWELLQKVKSEGLTPMVVT 132
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 384 NTLINGFVREENMDKAFALVSKMENQGLVPDVIT 417
+ L N + E M A+ L+ K++++GL P V+T
Sbjct: 99 SILFNSYPEAERMPGAWELLQKVKSEGLTPMVVT 132
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 384 NTLINGFVREENMDKAFALVSKMENQGLVPDVIT 417
+ L N + E M A+ L+ K++++GL P V+T
Sbjct: 99 SILFNSYPEAERMPGAWELLQKVKSEGLTPMVVT 132
>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
pdb|3QU5|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
Length = 243
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 384 NTLINGFVREENMDKAFALVSKMENQGLVPDVIT 417
+ L N + E M A+ L+ K++++GL P V+T
Sbjct: 99 SILFNSYPEAERMPGAWELLQKVKSEGLTPMVVT 132
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 384 NTLINGFVREENMDKAFALVSKMENQGLVPDVIT 417
+ L N + E M A+ L+ K++++GL P V+T
Sbjct: 99 SILFNSYPEAERMPGAWELLQKVKSEGLTPMVVT 132
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 384 NTLINGFVREENMDKAFALVSKMENQGLVPDVIT 417
+ L N + E M A+ L+ K++++GL P V+T
Sbjct: 99 SILFNSYPEAERMPGAWELLQKVKSEGLTPMVVT 132
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 384 NTLINGFVREENMDKAFALVSKMENQGLVPDVIT 417
+ L N + E M A+ L+ K++++GL P V+T
Sbjct: 99 SILFNSYPEAERMPGAWELLQKVKSEGLTPMVVT 132
>pdb|3NAW|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NAW|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|C Chain C, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|D Chain D, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
Length = 613
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 138 FSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEML 197
F+ I ++ NG L +A MYF A + ++ I++NG R+G ++ + L
Sbjct: 271 FNNSIMMYMENGSLLQAGMYFERHPGAMVSYNSSFIQIVMNGSRRDGMQERFRELYEVYL 330
Query: 198 EKGCVMDVVTYNTILNGLCRAKMLTEADD 226
+ V V + GLC + DD
Sbjct: 331 KNEKVYPVTQQSDF--GLCDGSGKPDWDD 357
>pdb|3SQV|A Chain A, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|B Chain B, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
Length = 616
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 138 FSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEML 197
F+ I ++ NG L +A MYF A + ++ I++NG R+G ++ + L
Sbjct: 274 FNNSIMMYMENGSLLQAGMYFERHPGAMVSYNSSFIQIVMNGSRRDGMQERFRELYEVYL 333
Query: 198 EKGCVMDVVTYNTILNGLCRAKMLTEADD 226
+ V V + GLC + DD
Sbjct: 334 KNEKVYPVTQQSDF--GLCDGSGKPDWDD 360
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,499,026
Number of Sequences: 62578
Number of extensions: 597480
Number of successful extensions: 1312
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1266
Number of HSP's gapped (non-prelim): 40
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)