Query 011378
Match_columns 487
No_of_seqs 252 out of 2674
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 00:41:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.4E-79 9.6E-84 631.5 61.1 484 2-487 377-917 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.4E-75 5.2E-80 603.8 58.9 457 26-486 366-848 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1.2E-73 2.6E-78 601.3 50.0 469 1-485 158-657 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1E-72 2.2E-77 580.8 52.2 468 1-485 93-563 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.8E-72 6.1E-77 590.8 51.7 468 1-486 193-691 (857)
6 PLN03081 pentatricopeptide (PP 100.0 4.1E-68 8.9E-73 546.7 49.8 443 26-485 83-527 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.7E-26 1.2E-30 243.8 58.5 460 3-477 439-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.2E-24 1.1E-28 228.7 59.2 463 4-480 372-867 (899)
9 PRK11788 tetratricopeptide rep 99.9 7E-20 1.5E-24 177.2 34.5 305 144-486 44-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 4.6E-19 1E-23 171.5 34.6 313 109-434 44-366 (389)
11 KOG4422 Uncharacterized conser 99.9 2.5E-17 5.4E-22 147.3 40.1 362 98-481 205-592 (625)
12 PRK11447 cellulose synthase su 99.8 4.6E-15 1E-19 161.3 54.5 431 37-484 276-746 (1157)
13 PRK11447 cellulose synthase su 99.8 1.6E-14 3.5E-19 157.1 56.5 458 4-479 121-700 (1157)
14 KOG4422 Uncharacterized conser 99.8 5.2E-16 1.1E-20 139.0 35.6 239 28-270 205-463 (625)
15 KOG4318 Bicoid mRNA stability 99.7 8.1E-15 1.8E-19 142.4 32.7 222 16-255 11-286 (1088)
16 TIGR00990 3a0801s09 mitochondr 99.7 3E-12 6.5E-17 130.8 50.8 424 33-477 130-569 (615)
17 PRK15174 Vi polysaccharide exp 99.7 3.6E-13 7.8E-18 137.3 43.1 329 33-374 45-381 (656)
18 PRK15174 Vi polysaccharide exp 99.7 4.1E-13 8.9E-18 136.9 43.0 358 41-409 16-381 (656)
19 PRK10049 pgaA outer membrane p 99.7 2.3E-12 4.9E-17 134.3 49.2 402 29-443 14-455 (765)
20 PRK10049 pgaA outer membrane p 99.7 2.6E-12 5.6E-17 133.9 49.6 390 5-408 25-455 (765)
21 TIGR00990 3a0801s09 mitochondr 99.7 5.6E-12 1.2E-16 128.9 47.7 421 4-444 136-571 (615)
22 PRK14574 hmsH outer membrane p 99.7 1.6E-11 3.4E-16 126.0 49.3 191 283-476 300-510 (822)
23 PRK14574 hmsH outer membrane p 99.7 2.3E-11 4.9E-16 124.9 49.6 436 4-456 43-523 (822)
24 PRK09782 bacteriophage N4 rece 99.7 3.1E-11 6.8E-16 126.4 50.2 79 8-93 57-136 (987)
25 PRK09782 bacteriophage N4 rece 99.7 6.6E-11 1.4E-15 124.0 51.4 227 240-478 477-705 (987)
26 KOG4318 Bicoid mRNA stability 99.6 3E-12 6.6E-17 124.8 30.1 223 51-290 11-286 (1088)
27 KOG4626 O-linked N-acetylgluco 99.6 3.1E-11 6.8E-16 113.6 35.1 365 65-451 116-490 (966)
28 KOG4626 O-linked N-acetylgluco 99.6 4.4E-11 9.6E-16 112.6 34.3 374 30-425 116-500 (966)
29 KOG2076 RNA polymerase III tra 99.5 2.9E-08 6.3E-13 98.1 47.9 468 4-479 149-695 (895)
30 PF13041 PPR_2: PPR repeat fam 99.4 2.9E-13 6.2E-18 87.8 6.3 48 413-460 1-48 (50)
31 PF13041 PPR_2: PPR repeat fam 99.4 4.1E-13 8.8E-18 87.1 6.6 50 378-427 1-50 (50)
32 PRK10747 putative protoheme IX 99.4 1.7E-09 3.6E-14 104.2 33.3 250 216-477 129-388 (398)
33 PRK10747 putative protoheme IX 99.4 3.3E-09 7.1E-14 102.2 32.3 251 181-442 129-388 (398)
34 KOG2002 TPR-containing nuclear 99.4 1.4E-07 2.9E-12 94.2 43.0 456 5-474 209-740 (1018)
35 PF13429 TPR_15: Tetratricopep 99.4 8E-12 1.7E-16 114.8 12.4 159 312-475 112-273 (280)
36 PF13429 TPR_15: Tetratricopep 99.3 1.5E-11 3.2E-16 113.1 13.8 259 35-301 13-274 (280)
37 KOG2003 TPR repeat-containing 99.3 1E-08 2.2E-13 93.5 30.7 205 251-465 501-709 (840)
38 KOG2002 TPR-containing nuclear 99.3 1.9E-07 4.2E-12 93.1 40.9 421 11-444 252-745 (1018)
39 TIGR00540 hemY_coli hemY prote 99.3 1.1E-08 2.3E-13 99.1 32.3 129 344-476 262-396 (409)
40 TIGR00540 hemY_coli hemY prote 99.3 1.1E-08 2.5E-13 99.0 32.2 130 309-441 262-396 (409)
41 COG3071 HemY Uncharacterized e 99.3 1.9E-08 4.1E-13 90.7 30.5 285 113-443 97-389 (400)
42 COG3071 HemY Uncharacterized e 99.3 2.9E-08 6.3E-13 89.5 30.7 291 43-344 97-395 (400)
43 KOG2076 RNA polymerase III tra 99.3 3.8E-07 8.3E-12 90.4 40.0 362 110-478 150-554 (895)
44 KOG2003 TPR repeat-containing 99.2 4.6E-08 9.9E-13 89.3 28.0 426 36-477 207-687 (840)
45 COG2956 Predicted N-acetylgluc 99.2 2.7E-07 5.9E-12 81.0 28.9 225 211-442 113-345 (389)
46 KOG1915 Cell cycle control pro 99.1 8.3E-06 1.8E-10 75.5 42.0 426 39-479 82-536 (677)
47 COG2956 Predicted N-acetylgluc 99.1 7.8E-07 1.7E-11 78.2 28.7 270 78-356 48-326 (389)
48 TIGR02521 type_IV_pilW type IV 99.1 1.7E-07 3.7E-12 83.4 25.8 197 278-478 34-231 (234)
49 TIGR02521 type_IV_pilW type IV 99.0 1.9E-07 4.2E-12 83.0 24.9 195 207-405 33-228 (234)
50 KOG1155 Anaphase-promoting com 99.0 1.5E-05 3.3E-10 73.6 36.8 343 40-401 174-528 (559)
51 KOG1915 Cell cycle control pro 99.0 2.2E-05 4.8E-10 72.8 45.1 421 43-476 154-622 (677)
52 KOG0495 HAT repeat protein [RN 99.0 3.6E-05 7.9E-10 74.2 46.4 451 10-478 391-879 (913)
53 PF12569 NARP1: NMDA receptor- 99.0 3.2E-06 6.9E-11 82.7 31.2 288 144-442 13-332 (517)
54 KOG1155 Anaphase-promoting com 99.0 3.3E-05 7.1E-10 71.5 37.7 256 177-442 234-493 (559)
55 KOG1126 DNA-binding cell divis 98.9 2.9E-07 6.2E-12 88.4 22.5 277 45-338 334-619 (638)
56 PF12569 NARP1: NMDA receptor- 98.9 4.2E-06 9E-11 81.9 31.1 289 178-478 12-333 (517)
57 PF12854 PPR_1: PPR repeat 98.9 1.4E-09 3E-14 63.3 3.8 32 410-441 2-33 (34)
58 KOG1840 Kinesin light chain [C 98.9 6.3E-07 1.4E-11 86.6 24.0 166 312-477 285-477 (508)
59 KOG0547 Translocase of outer m 98.9 6.6E-05 1.4E-09 70.0 34.5 232 217-461 338-578 (606)
60 KOG1840 Kinesin light chain [C 98.9 2.3E-06 4.9E-11 82.8 25.8 129 278-406 328-476 (508)
61 KOG1126 DNA-binding cell divis 98.9 1.7E-06 3.7E-11 83.2 24.6 196 205-443 421-619 (638)
62 KOG0985 Vesicle coat protein c 98.9 2.8E-05 6.2E-10 78.3 33.3 42 6-48 849-890 (1666)
63 PRK12370 invasion protein regu 98.9 3.1E-06 6.7E-11 85.4 27.9 178 220-407 319-500 (553)
64 PF12854 PPR_1: PPR repeat 98.8 4.6E-09 9.9E-14 61.1 3.7 32 375-406 2-33 (34)
65 PRK12370 invasion protein regu 98.8 4.7E-06 1E-10 84.0 26.7 261 205-480 256-536 (553)
66 KOG0495 HAT repeat protein [RN 98.8 0.00024 5.1E-09 68.8 47.2 392 37-443 383-781 (913)
67 KOG1156 N-terminal acetyltrans 98.8 0.00024 5.1E-09 68.7 40.0 131 307-440 366-507 (700)
68 KOG1156 N-terminal acetyltrans 98.7 0.00032 6.9E-09 67.8 43.4 420 40-477 51-509 (700)
69 KOG3785 Uncharacterized conser 98.7 0.00019 4.2E-09 64.2 31.1 188 284-478 294-489 (557)
70 KOG0547 Translocase of outer m 98.7 0.00027 5.8E-09 66.1 31.8 216 251-477 337-564 (606)
71 cd05804 StaR_like StaR_like; a 98.6 0.00042 9.1E-09 66.1 33.6 57 386-442 270-334 (355)
72 KOG2047 mRNA splicing factor [ 98.6 0.00071 1.5E-08 65.5 42.8 219 253-476 360-612 (835)
73 KOG1129 TPR repeat-containing 98.6 7.6E-06 1.7E-10 72.2 18.2 234 203-443 221-457 (478)
74 KOG3616 Selective LIM binding 98.6 0.00031 6.7E-09 68.8 30.5 193 247-473 739-931 (1636)
75 PF04733 Coatomer_E: Coatomer 98.6 2.6E-06 5.7E-11 77.5 16.0 222 241-478 36-264 (290)
76 PRK04841 transcriptional regul 98.6 0.0011 2.4E-08 71.9 38.5 336 110-445 384-761 (903)
77 KOG2047 mRNA splicing factor [ 98.6 0.00097 2.1E-08 64.6 41.9 452 2-467 176-711 (835)
78 KOG3617 WD40 and TPR repeat-co 98.5 0.00087 1.9E-08 66.6 30.8 239 29-301 725-993 (1416)
79 KOG3785 Uncharacterized conser 98.5 0.00088 1.9E-08 60.2 35.6 418 6-455 33-499 (557)
80 PRK04841 transcriptional regul 98.5 0.004 8.7E-08 67.6 40.5 335 145-479 384-760 (903)
81 KOG2376 Signal recognition par 98.5 0.0016 3.6E-08 62.5 34.9 159 312-474 341-515 (652)
82 KOG1129 TPR repeat-containing 98.5 1.7E-05 3.7E-10 70.1 16.6 228 34-268 227-457 (478)
83 PF04733 Coatomer_E: Coatomer 98.4 2.3E-05 5E-10 71.4 17.7 223 31-268 36-264 (290)
84 KOG4340 Uncharacterized conser 98.4 0.00026 5.6E-09 62.0 22.8 337 59-408 4-374 (459)
85 KOG0985 Vesicle coat protein c 98.4 0.0033 7.1E-08 64.1 37.7 319 29-404 983-1303(1666)
86 cd05804 StaR_like StaR_like; a 98.4 0.0022 4.7E-08 61.2 33.6 195 33-232 9-213 (355)
87 TIGR00756 PPR pentatricopeptid 98.4 7E-07 1.5E-11 52.7 4.6 33 452-484 2-34 (35)
88 KOG1173 Anaphase-promoting com 98.3 0.002 4.3E-08 61.6 27.9 287 60-358 239-535 (611)
89 TIGR00756 PPR pentatricopeptid 98.3 1.1E-06 2.4E-11 51.8 4.4 33 417-449 2-34 (35)
90 PF13812 PPR_3: Pentatricopept 98.3 1.8E-06 3.9E-11 50.5 4.5 33 451-483 2-34 (34)
91 PRK11189 lipoprotein NlpI; Pro 98.3 0.001 2.2E-08 61.4 24.8 217 44-270 40-266 (296)
92 PRK11189 lipoprotein NlpI; Pro 98.3 0.0019 4.1E-08 59.7 26.5 27 347-373 238-264 (296)
93 PF13812 PPR_3: Pentatricopept 98.2 2E-06 4.3E-11 50.3 4.3 33 416-448 2-34 (34)
94 COG3063 PilF Tfp pilus assembl 98.2 0.003 6.5E-08 53.6 23.3 202 210-418 40-243 (250)
95 KOG4340 Uncharacterized conser 98.2 0.0039 8.4E-08 54.9 30.4 298 24-335 4-335 (459)
96 KOG2376 Signal recognition par 98.2 0.008 1.7E-07 57.9 37.7 118 315-436 381-512 (652)
97 KOG1173 Anaphase-promoting com 98.2 0.0078 1.7E-07 57.7 33.1 285 131-426 240-533 (611)
98 COG3063 PilF Tfp pilus assembl 98.1 0.0033 7.1E-08 53.4 22.1 194 104-302 39-234 (250)
99 KOG3616 Selective LIM binding 98.1 0.014 3E-07 57.8 28.9 308 114-475 545-875 (1636)
100 KOG1128 Uncharacterized conser 98.1 0.00034 7.3E-09 68.7 18.0 215 242-479 400-616 (777)
101 PF10037 MRP-S27: Mitochondria 98.1 6.3E-05 1.4E-09 71.3 12.6 123 166-288 62-186 (429)
102 KOG1914 mRNA cleavage and poly 98.1 0.012 2.6E-07 56.2 40.5 424 28-477 18-499 (656)
103 KOG3617 WD40 and TPR repeat-co 98.1 0.018 3.8E-07 57.9 35.4 50 430-479 1306-1359(1416)
104 PF10037 MRP-S27: Mitochondria 98.0 9.5E-05 2.1E-09 70.1 13.0 121 133-253 64-186 (429)
105 PF08579 RPM2: Mitochondrial r 98.0 0.00015 3.3E-09 53.9 10.8 79 384-462 29-116 (120)
106 PF08579 RPM2: Mitochondrial r 98.0 5.8E-05 1.3E-09 56.1 8.6 76 35-110 30-114 (120)
107 KOG1070 rRNA processing protei 98.0 0.0027 5.8E-08 66.9 23.0 222 63-290 1455-1686(1710)
108 PF01535 PPR: PPR repeat; Int 98.0 1E-05 2.3E-10 46.0 3.5 26 418-443 3-28 (31)
109 PF01535 PPR: PPR repeat; Int 97.9 1.7E-05 3.6E-10 45.1 3.7 31 451-481 1-31 (31)
110 KOG1128 Uncharacterized conser 97.9 0.01 2.2E-07 58.8 24.0 219 167-408 395-615 (777)
111 KOG1070 rRNA processing protei 97.9 0.0085 1.8E-07 63.4 24.6 227 240-472 1458-1693(1710)
112 KOG1174 Anaphase-promoting com 97.9 0.024 5.1E-07 52.5 35.0 292 138-443 197-499 (564)
113 TIGR03302 OM_YfiO outer membra 97.8 0.0062 1.4E-07 54.2 20.7 185 275-479 33-232 (235)
114 PF06239 ECSIT: Evolutionarily 97.8 0.00034 7.5E-09 58.9 11.1 104 307-429 44-152 (228)
115 KOG3081 Vesicle coat complex C 97.8 0.023 4.9E-07 49.5 21.7 167 300-477 98-269 (299)
116 TIGR03302 OM_YfiO outer membra 97.8 0.0058 1.3E-07 54.4 19.3 61 206-268 34-98 (235)
117 PF06239 ECSIT: Evolutionarily 97.7 0.00037 8.1E-09 58.6 9.6 105 97-220 44-153 (228)
118 PRK14720 transcript cleavage f 97.7 0.053 1.2E-06 56.7 26.5 57 242-300 118-174 (906)
119 KOG4162 Predicted calmodulin-b 97.6 0.092 2E-06 52.6 36.5 212 19-233 312-541 (799)
120 KOG1125 TPR repeat-containing 97.6 0.018 4E-07 55.5 20.9 245 110-363 295-560 (579)
121 PRK14720 transcript cleavage f 97.6 0.021 4.6E-07 59.6 22.5 236 65-356 31-268 (906)
122 KOG4162 Predicted calmodulin-b 97.5 0.15 3.2E-06 51.2 37.8 206 94-302 317-540 (799)
123 PRK15179 Vi polysaccharide bio 97.5 0.051 1.1E-06 56.0 23.3 229 34-287 32-267 (694)
124 COG5010 TadD Flp pilus assembl 97.4 0.022 4.7E-07 49.5 17.2 159 279-441 70-228 (257)
125 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0088 1.9E-07 56.7 15.9 118 316-440 175-293 (395)
126 PF07079 DUF1347: Protein of u 97.4 0.12 2.6E-06 48.6 40.0 441 5-476 16-521 (549)
127 PF09976 TPR_21: Tetratricopep 97.3 0.012 2.6E-07 47.9 14.2 86 353-440 56-143 (145)
128 KOG3081 Vesicle coat complex C 97.3 0.094 2E-06 45.8 21.4 86 215-304 147-236 (299)
129 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.009 2E-07 56.7 15.0 124 278-408 172-296 (395)
130 PF09976 TPR_21: Tetratricopep 97.3 0.012 2.6E-07 47.8 14.1 126 347-475 14-143 (145)
131 KOG3060 Uncharacterized conser 97.3 0.092 2E-06 45.5 21.4 184 216-408 23-219 (289)
132 PRK10370 formate-dependent nit 97.3 0.076 1.6E-06 45.7 19.4 154 283-453 24-181 (198)
133 PRK10370 formate-dependent nit 97.3 0.071 1.5E-06 45.9 19.0 160 246-421 22-184 (198)
134 COG4783 Putative Zn-dependent 97.3 0.19 4.2E-06 47.8 23.7 113 112-229 318-432 (484)
135 COG4783 Putative Zn-dependent 97.2 0.035 7.6E-07 52.6 17.4 108 324-435 320-428 (484)
136 KOG1125 TPR repeat-containing 97.2 0.082 1.8E-06 51.2 19.9 216 6-230 296-523 (579)
137 KOG1538 Uncharacterized conser 97.2 0.075 1.6E-06 52.1 19.5 89 348-447 750-849 (1081)
138 PF04840 Vps16_C: Vps16, C-ter 97.2 0.2 4.3E-06 46.5 27.9 125 311-461 178-302 (319)
139 COG5010 TadD Flp pilus assembl 97.2 0.14 3E-06 44.7 19.9 118 141-261 106-223 (257)
140 PRK15179 Vi polysaccharide bio 97.1 0.4 8.7E-06 49.5 25.5 171 35-212 57-229 (694)
141 PRK15359 type III secretion sy 97.1 0.013 2.8E-07 47.5 12.0 93 208-302 27-119 (144)
142 PRK15359 type III secretion sy 97.1 0.028 6.1E-07 45.6 13.8 92 350-443 29-120 (144)
143 TIGR02552 LcrH_SycD type III s 97.1 0.028 6E-07 44.9 13.7 91 351-443 23-113 (135)
144 TIGR02552 LcrH_SycD type III s 97.0 0.033 7.2E-07 44.5 13.7 94 313-408 20-113 (135)
145 PF04840 Vps16_C: Vps16, C-ter 97.0 0.3 6.5E-06 45.3 28.9 106 207-332 179-284 (319)
146 KOG1174 Anaphase-promoting com 96.9 0.34 7.4E-06 45.2 31.3 257 133-406 230-497 (564)
147 PF05843 Suf: Suppressor of fo 96.9 0.028 6.1E-07 51.3 13.9 129 347-478 3-135 (280)
148 cd00189 TPR Tetratricopeptide 96.8 0.031 6.7E-07 40.7 10.9 89 387-477 7-95 (100)
149 KOG2280 Vacuolar assembly/sort 96.7 0.75 1.6E-05 46.3 27.2 323 128-474 425-794 (829)
150 PF05843 Suf: Suppressor of fo 96.7 0.033 7E-07 50.9 12.7 129 32-163 3-135 (280)
151 PF12921 ATP13: Mitochondrial 96.7 0.024 5.3E-07 44.4 9.9 49 166-214 48-97 (126)
152 KOG2041 WD40 repeat protein [G 96.7 0.82 1.8E-05 45.6 25.1 64 380-443 1021-1085(1189)
153 PF12921 ATP13: Mitochondrial 96.6 0.031 6.7E-07 43.8 10.0 96 344-459 1-97 (126)
154 cd00189 TPR Tetratricopeptide 96.6 0.05 1.1E-06 39.5 10.9 89 352-442 7-95 (100)
155 TIGR02795 tol_pal_ybgF tol-pal 96.6 0.094 2E-06 40.6 12.8 94 349-444 6-105 (119)
156 KOG1914 mRNA cleavage and poly 96.5 0.84 1.8E-05 44.2 35.5 120 361-485 347-470 (656)
157 KOG3060 Uncharacterized conser 96.5 0.48 1E-05 41.3 21.7 185 183-373 25-219 (289)
158 KOG0624 dsRNA-activated protei 96.5 0.67 1.5E-05 42.2 24.3 83 392-478 281-369 (504)
159 TIGR02795 tol_pal_ybgF tol-pal 96.4 0.2 4.3E-06 38.7 13.7 94 140-233 7-104 (119)
160 PF12895 Apc3: Anaphase-promot 96.4 0.0071 1.5E-07 43.8 4.8 18 387-404 32-49 (84)
161 KOG3941 Intermediate in Toll s 96.4 0.039 8.5E-07 48.4 9.9 104 98-220 65-173 (406)
162 PRK02603 photosystem I assembl 96.3 0.42 9.1E-06 40.1 16.1 61 313-373 38-100 (172)
163 PF12895 Apc3: Anaphase-promot 96.3 0.0098 2.1E-07 43.0 5.2 80 393-475 2-83 (84)
164 KOG3941 Intermediate in Toll s 96.3 0.038 8.2E-07 48.5 9.4 105 307-430 64-173 (406)
165 PF14938 SNAP: Soluble NSF att 96.2 0.96 2.1E-05 41.4 20.6 23 139-161 39-61 (282)
166 CHL00033 ycf3 photosystem I as 96.2 0.1 2.2E-06 43.6 11.5 63 31-93 36-100 (168)
167 CHL00033 ycf3 photosystem I as 96.1 0.17 3.6E-06 42.3 12.3 26 207-232 74-99 (168)
168 PLN02789 farnesyltranstransfer 96.0 1.4 3E-05 41.1 25.9 132 222-357 125-267 (320)
169 KOG0548 Molecular co-chaperone 96.0 1.7 3.7E-05 42.1 33.3 236 208-462 227-471 (539)
170 PF13170 DUF4003: Protein of u 95.8 0.65 1.4E-05 42.6 15.8 22 188-209 200-221 (297)
171 PF03704 BTAD: Bacterial trans 95.8 0.44 9.4E-06 38.6 13.5 68 417-485 64-136 (146)
172 KOG1538 Uncharacterized conser 95.8 0.5 1.1E-05 46.7 15.1 211 27-265 553-798 (1081)
173 KOG2053 Mitochondrial inherita 95.7 3 6.4E-05 43.2 45.0 223 6-235 20-256 (932)
174 KOG2796 Uncharacterized conser 95.7 1.1 2.4E-05 39.3 15.6 139 279-421 181-325 (366)
175 PRK10153 DNA-binding transcrip 95.7 0.92 2E-05 45.3 17.6 143 305-453 332-489 (517)
176 PF14938 SNAP: Soluble NSF att 95.7 1.7 3.6E-05 39.9 19.1 110 247-373 101-224 (282)
177 KOG1127 TPR repeat-containing 95.7 3.4 7.4E-05 43.4 29.6 421 32-476 494-949 (1238)
178 PRK02603 photosystem I assembl 95.7 0.56 1.2E-05 39.3 13.9 86 31-118 36-124 (172)
179 PF12688 TPR_5: Tetratrico pep 95.5 0.86 1.9E-05 35.4 13.2 102 354-461 10-117 (120)
180 smart00299 CLH Clathrin heavy 95.5 0.54 1.2E-05 37.8 12.7 126 313-461 10-136 (140)
181 PLN02789 farnesyltranstransfer 95.5 2.2 4.7E-05 39.8 26.2 204 216-427 48-267 (320)
182 KOG2053 Mitochondrial inherita 95.4 3.8 8.3E-05 42.4 46.8 193 5-201 53-257 (932)
183 PRK10153 DNA-binding transcrip 95.4 1.1 2.5E-05 44.7 16.9 135 339-477 331-480 (517)
184 PF03704 BTAD: Bacterial trans 95.4 0.11 2.4E-06 42.2 8.3 69 383-452 65-138 (146)
185 PF14559 TPR_19: Tetratricopep 95.3 0.067 1.4E-06 36.7 6.0 48 393-442 4-52 (68)
186 KOG1920 IkappaB kinase complex 95.3 5 0.00011 43.0 25.0 137 277-441 910-1052(1265)
187 KOG1127 TPR repeat-containing 95.3 4.5 9.8E-05 42.5 29.3 216 203-424 773-1012(1238)
188 PLN03088 SGT1, suppressor of 95.3 0.55 1.2E-05 44.6 13.8 86 320-408 12-98 (356)
189 smart00299 CLH Clathrin heavy 95.1 1.4 3E-05 35.4 15.3 84 70-161 12-95 (140)
190 KOG2041 WD40 repeat protein [G 95.1 4.3 9.3E-05 40.9 25.0 328 97-461 689-1068(1189)
191 PLN03088 SGT1, suppressor of 95.1 0.67 1.5E-05 44.0 13.7 101 283-387 10-110 (356)
192 PF14559 TPR_19: Tetratricopep 94.9 0.12 2.5E-06 35.4 6.2 22 385-406 30-51 (68)
193 PF13432 TPR_16: Tetratricopep 94.9 0.15 3.2E-06 34.5 6.6 52 424-477 6-58 (65)
194 PF13170 DUF4003: Protein of u 94.7 1.7 3.8E-05 39.8 14.9 131 291-423 78-225 (297)
195 COG5107 RNA14 Pre-mRNA 3'-end 94.6 1.2 2.6E-05 42.2 13.5 145 276-426 398-546 (660)
196 PF13281 DUF4071: Domain of un 94.6 4.1 8.9E-05 38.5 19.8 77 280-356 146-228 (374)
197 PF13432 TPR_16: Tetratricopep 94.5 0.23 5E-06 33.5 6.9 54 213-267 5-58 (65)
198 PF09205 DUF1955: Domain of un 94.4 1.8 4E-05 33.7 12.2 19 386-404 126-144 (161)
199 PF04053 Coatomer_WDAD: Coatom 94.4 0.59 1.3E-05 45.6 11.7 129 278-439 298-426 (443)
200 PF04097 Nic96: Nup93/Nic96; 94.3 7.2 0.00016 40.1 21.5 46 101-148 113-158 (613)
201 PF13424 TPR_12: Tetratricopep 94.3 0.13 2.9E-06 36.3 5.5 61 417-477 7-73 (78)
202 PRK15363 pathogenicity island 94.3 1.2 2.6E-05 36.1 11.2 88 213-302 43-130 (157)
203 PF12688 TPR_5: Tetratrico pep 94.1 2.2 4.7E-05 33.1 13.0 49 288-336 14-64 (120)
204 PF04053 Coatomer_WDAD: Coatom 94.0 1.7 3.6E-05 42.5 13.9 129 68-229 298-426 (443)
205 KOG2280 Vacuolar assembly/sort 94.0 8.1 0.00017 39.4 31.8 342 59-438 426-793 (829)
206 PF13414 TPR_11: TPR repeat; P 94.0 0.37 8.1E-06 33.0 7.1 62 205-267 3-65 (69)
207 PF07079 DUF1347: Protein of u 93.7 6.7 0.00014 37.5 37.5 422 2-456 53-531 (549)
208 PRK10866 outer membrane biogen 93.6 5.1 0.00011 35.7 20.6 56 211-266 181-238 (243)
209 PRK10803 tol-pal system protei 93.5 1.9 4.1E-05 38.9 12.3 93 347-443 145-245 (263)
210 PF13414 TPR_11: TPR repeat; P 93.3 0.58 1.3E-05 32.0 7.2 60 416-477 4-65 (69)
211 PF13424 TPR_12: Tetratricopep 93.0 0.33 7.2E-06 34.2 5.7 60 207-266 7-72 (78)
212 PF07035 Mic1: Colon cancer-as 93.0 4.5 9.8E-05 33.4 16.3 132 332-478 16-148 (167)
213 PF13929 mRNA_stabil: mRNA sta 92.8 7.2 0.00016 35.1 16.7 114 221-334 144-262 (292)
214 PRK10866 outer membrane biogen 92.7 7 0.00015 34.8 20.8 55 422-476 182-238 (243)
215 PRK10803 tol-pal system protei 92.7 3.3 7.1E-05 37.4 12.7 59 137-197 145-207 (263)
216 PF13371 TPR_9: Tetratricopept 92.5 1.1 2.4E-05 30.9 7.8 55 388-443 3-57 (73)
217 KOG0548 Molecular co-chaperone 92.5 11 0.00025 36.7 33.6 103 3-110 10-114 (539)
218 KOG4570 Uncharacterized conser 92.3 1.6 3.5E-05 39.4 9.8 104 234-339 58-164 (418)
219 PF13371 TPR_9: Tetratricopept 92.1 0.8 1.7E-05 31.7 6.6 57 423-480 3-59 (73)
220 KOG0553 TPR repeat-containing 92.1 2 4.2E-05 38.6 10.1 101 353-459 89-191 (304)
221 KOG0553 TPR repeat-containing 92.0 3.2 7E-05 37.3 11.3 97 285-387 91-189 (304)
222 COG4700 Uncharacterized protei 92.0 6.5 0.00014 32.8 15.4 144 306-454 85-231 (251)
223 PLN03098 LPA1 LOW PSII ACCUMUL 91.7 3.7 8.1E-05 39.5 12.2 62 345-408 75-140 (453)
224 KOG4570 Uncharacterized conser 91.7 3.2 7E-05 37.5 10.9 104 128-235 57-165 (418)
225 PF13762 MNE1: Mitochondrial s 91.5 2.7 5.8E-05 33.7 9.4 45 137-181 81-126 (145)
226 PF13281 DUF4071: Domain of un 91.2 14 0.0003 35.0 18.5 76 140-215 146-227 (374)
227 KOG2610 Uncharacterized conser 91.1 6.8 0.00015 35.9 12.5 150 323-475 116-272 (491)
228 PRK15363 pathogenicity island 90.9 7.6 0.00016 31.6 14.8 84 181-266 46-129 (157)
229 KOG2114 Vacuolar assembly/sort 90.9 22 0.00048 36.9 25.5 178 32-232 336-517 (933)
230 PF09205 DUF1955: Domain of un 90.6 7 0.00015 30.6 14.5 65 312-377 88-152 (161)
231 COG3629 DnrI DNA-binding trans 90.5 3.6 7.8E-05 37.1 10.4 76 103-179 156-236 (280)
232 PF10602 RPN7: 26S proteasome 90.2 3.5 7.7E-05 34.6 9.7 61 207-267 38-100 (177)
233 PF07035 Mic1: Colon cancer-as 90.2 9.5 0.00021 31.5 15.4 131 51-196 15-146 (167)
234 PLN03098 LPA1 LOW PSII ACCUMUL 89.6 7.4 0.00016 37.5 12.1 60 172-233 77-140 (453)
235 PF13525 YfiO: Outer membrane 89.5 13 0.00028 32.1 15.7 44 282-327 148-195 (203)
236 PF02259 FAT: FAT domain; Int 88.9 18 0.00039 34.2 14.9 66 414-479 145-213 (352)
237 PF10300 DUF3808: Protein of u 88.8 27 0.00058 34.7 17.2 52 389-441 314-373 (468)
238 COG3629 DnrI DNA-binding trans 88.6 6.1 0.00013 35.7 10.3 57 314-371 157-213 (280)
239 PF10300 DUF3808: Protein of u 88.5 27 0.00059 34.7 15.9 163 207-372 190-374 (468)
240 PF13762 MNE1: Mitochondrial s 88.2 10 0.00023 30.4 10.3 84 69-152 43-132 (145)
241 COG4235 Cytochrome c biogenesi 88.1 20 0.00043 32.5 13.2 100 308-409 154-256 (287)
242 PF13176 TPR_7: Tetratricopept 87.6 1.5 3.2E-05 25.4 4.1 26 452-477 1-26 (36)
243 PF13929 mRNA_stabil: mRNA sta 87.4 22 0.00047 32.2 16.0 64 166-229 198-262 (292)
244 KOG0624 dsRNA-activated protei 87.2 25 0.00054 32.6 29.9 95 29-129 37-135 (504)
245 PF02284 COX5A: Cytochrome c o 86.6 11 0.00024 27.9 8.9 60 118-178 28-87 (108)
246 PF13512 TPR_18: Tetratricopep 86.4 11 0.00024 30.1 9.5 84 28-112 9-94 (142)
247 PF10602 RPN7: 26S proteasome 86.2 13 0.00028 31.2 10.6 59 313-371 39-99 (177)
248 KOG2796 Uncharacterized conser 86.2 24 0.00052 31.4 23.9 153 292-456 166-325 (366)
249 PF04184 ST7: ST7 protein; In 86.1 36 0.00078 33.4 16.9 82 275-356 259-342 (539)
250 COG5107 RNA14 Pre-mRNA 3'-end 85.9 34 0.00075 33.0 33.0 94 16-114 30-123 (660)
251 COG4235 Cytochrome c biogenesi 85.9 18 0.00038 32.8 11.6 99 342-444 153-256 (287)
252 COG1729 Uncharacterized protei 85.8 20 0.00042 32.1 11.7 94 67-163 144-243 (262)
253 KOG2297 Predicted translation 85.7 28 0.0006 31.7 19.2 153 222-400 184-341 (412)
254 PHA02875 ankyrin repeat protei 85.4 38 0.00082 33.0 16.8 68 192-263 17-88 (413)
255 PRK15331 chaperone protein Sic 85.4 14 0.0003 30.3 9.8 87 215-303 47-133 (165)
256 KOG1920 IkappaB kinase complex 85.3 62 0.0013 35.4 17.2 113 342-474 932-1050(1265)
257 PHA02875 ankyrin repeat protei 85.2 39 0.00084 32.9 16.8 74 7-88 11-88 (413)
258 KOG2114 Vacuolar assembly/sort 84.2 58 0.0013 34.1 27.4 170 4-196 343-516 (933)
259 PF13176 TPR_7: Tetratricopept 83.8 2.8 6.2E-05 24.2 4.0 26 417-442 1-26 (36)
260 PF00637 Clathrin: Region in C 83.7 0.61 1.3E-05 37.6 1.5 85 70-161 12-96 (143)
261 PF00637 Clathrin: Region in C 83.5 0.97 2.1E-05 36.4 2.6 82 2-90 14-95 (143)
262 PF02284 COX5A: Cytochrome c o 83.1 5.3 0.00011 29.6 5.8 59 399-458 29-87 (108)
263 KOG0276 Vesicle coat complex C 83.0 13 0.00028 37.1 10.0 98 76-194 648-745 (794)
264 cd00923 Cyt_c_Oxidase_Va Cytoc 82.9 11 0.00024 27.6 7.3 46 187-232 24-69 (103)
265 COG4700 Uncharacterized protei 81.9 30 0.00065 29.1 18.6 126 131-260 85-213 (251)
266 PF08631 SPO22: Meiosis protei 81.8 41 0.00089 30.7 24.4 102 277-380 86-192 (278)
267 COG1729 Uncharacterized protei 81.7 25 0.00054 31.4 10.7 86 252-337 153-242 (262)
268 KOG1130 Predicted G-alpha GTPa 81.5 14 0.00031 35.0 9.4 129 207-335 197-340 (639)
269 PF04184 ST7: ST7 protein; In 79.5 27 0.00059 34.2 10.8 78 351-428 265-344 (539)
270 PF13525 YfiO: Outer membrane 78.8 42 0.0009 28.9 17.7 52 42-93 17-70 (203)
271 PF13374 TPR_10: Tetratricopep 78.8 5.8 0.00013 23.4 4.4 27 451-477 3-29 (42)
272 PRK15331 chaperone protein Sic 78.7 30 0.00065 28.5 9.4 87 285-373 47-133 (165)
273 COG4649 Uncharacterized protei 78.2 38 0.00083 28.1 13.1 137 31-169 60-201 (221)
274 KOG0991 Replication factor C, 78.2 46 0.001 29.2 10.7 125 316-449 136-272 (333)
275 KOG1941 Acetylcholine receptor 77.7 45 0.00097 31.3 11.1 199 277-475 45-271 (518)
276 PF13374 TPR_10: Tetratricopep 77.2 6.5 0.00014 23.2 4.3 28 416-443 3-30 (42)
277 PF13428 TPR_14: Tetratricopep 76.0 6.4 0.00014 23.9 4.0 27 452-478 3-29 (44)
278 KOG4555 TPR repeat-containing 75.7 37 0.0008 26.7 11.1 91 74-165 52-145 (175)
279 PF08631 SPO22: Meiosis protei 75.3 65 0.0014 29.4 24.9 27 242-268 123-149 (278)
280 COG4455 ImpE Protein of avirul 75.2 27 0.00058 30.2 8.4 54 315-369 6-59 (273)
281 PF11848 DUF3368: Domain of un 75.0 13 0.00028 23.3 5.1 33 426-458 13-45 (48)
282 PF09613 HrpB1_HrpK: Bacterial 74.5 46 0.001 27.2 12.4 53 110-164 20-73 (160)
283 PF11663 Toxin_YhaV: Toxin wit 74.3 2.2 4.8E-05 33.3 1.8 25 461-485 106-130 (140)
284 COG4105 ComL DNA uptake lipopr 74.2 64 0.0014 28.7 18.8 63 30-93 35-99 (254)
285 KOG4555 TPR repeat-containing 72.4 46 0.00099 26.2 10.1 91 144-235 52-145 (175)
286 cd00923 Cyt_c_Oxidase_Va Cytoc 72.4 36 0.00079 25.1 9.3 61 117-178 24-84 (103)
287 KOG0276 Vesicle coat complex C 72.2 64 0.0014 32.5 11.3 97 322-439 649-745 (794)
288 PF13428 TPR_14: Tetratricopep 72.0 17 0.00037 22.0 5.2 16 355-370 11-26 (44)
289 PF11848 DUF3368: Domain of un 71.5 15 0.00033 23.0 4.9 19 83-101 20-38 (48)
290 PF07575 Nucleopor_Nup85: Nup8 71.1 1.3E+02 0.0028 30.9 15.5 94 204-301 371-464 (566)
291 COG4649 Uncharacterized protei 70.0 64 0.0014 26.9 13.5 124 111-234 69-196 (221)
292 PF11207 DUF2989: Protein of u 68.4 58 0.0012 27.9 9.0 72 327-399 123-197 (203)
293 PF04097 Nic96: Nup93/Nic96; 68.3 1.5E+02 0.0033 30.7 20.9 48 65-114 112-159 (613)
294 KOG2582 COP9 signalosome, subu 67.2 1.1E+02 0.0025 28.7 18.5 57 424-480 286-346 (422)
295 KOG1130 Predicted G-alpha GTPa 66.1 1.3E+02 0.0028 28.9 14.2 49 110-159 27-79 (639)
296 PF11663 Toxin_YhaV: Toxin wit 65.7 8.3 0.00018 30.2 3.3 31 77-109 107-137 (140)
297 PF00515 TPR_1: Tetratricopept 65.1 22 0.00047 19.8 4.4 26 452-477 3-28 (34)
298 KOG1550 Extracellular protein 64.9 1.7E+02 0.0037 29.9 15.9 117 256-376 228-359 (552)
299 PF07163 Pex26: Pex26 protein; 64.4 99 0.0021 28.0 9.9 87 280-368 88-181 (309)
300 KOG1585 Protein required for f 64.4 1E+02 0.0023 27.3 16.5 54 348-402 193-249 (308)
301 KOG0543 FKBP-type peptidyl-pro 63.5 1.4E+02 0.0031 28.5 13.0 62 311-373 258-319 (397)
302 KOG2610 Uncharacterized conser 63.0 1.3E+02 0.0029 28.0 11.8 151 147-300 115-272 (491)
303 COG4105 ComL DNA uptake lipopr 62.6 1.1E+02 0.0025 27.2 20.7 52 112-163 46-99 (254)
304 PF09613 HrpB1_HrpK: Bacterial 61.8 89 0.0019 25.6 12.0 15 112-126 56-70 (160)
305 TIGR03504 FimV_Cterm FimV C-te 61.2 18 0.00038 22.2 3.5 24 351-374 5-28 (44)
306 cd00280 TRFH Telomeric Repeat 61.0 54 0.0012 27.5 7.3 22 72-93 118-139 (200)
307 KOG0543 FKBP-type peptidyl-pro 60.7 1.4E+02 0.0029 28.6 10.7 17 4-20 217-233 (397)
308 KOG2066 Vacuolar assembly/sort 60.3 2.3E+02 0.0049 29.8 25.6 75 72-152 363-440 (846)
309 PF11207 DUF2989: Protein of u 59.9 1.1E+02 0.0024 26.2 10.0 79 111-190 117-198 (203)
310 KOG0687 26S proteasome regulat 59.6 1.5E+02 0.0032 27.5 15.7 166 114-305 36-211 (393)
311 COG0735 Fur Fe2+/Zn2+ uptake r 59.5 59 0.0013 26.2 7.4 61 403-464 9-69 (145)
312 COG0735 Fur Fe2+/Zn2+ uptake r 59.1 57 0.0012 26.3 7.3 64 121-185 7-70 (145)
313 PF07721 TPR_4: Tetratricopept 59.0 16 0.00034 19.2 2.8 13 424-436 10-22 (26)
314 TIGR03504 FimV_Cterm FimV C-te 58.9 20 0.00044 22.0 3.5 22 457-478 6-27 (44)
315 PF07163 Pex26: Pex26 protein; 58.3 1.4E+02 0.0031 27.0 9.9 89 140-228 88-181 (309)
316 PRK11906 transcriptional regul 57.2 2E+02 0.0043 28.2 14.2 106 362-473 321-430 (458)
317 COG5159 RPN6 26S proteasome re 56.9 1.6E+02 0.0034 26.9 11.4 54 316-369 9-69 (421)
318 PRK11639 zinc uptake transcrip 56.8 70 0.0015 26.6 7.7 64 369-433 15-78 (169)
319 KOG4077 Cytochrome c oxidase, 56.8 78 0.0017 24.7 7.0 46 118-163 67-112 (149)
320 PF02259 FAT: FAT domain; Int 56.6 1.7E+02 0.0038 27.4 20.7 201 177-408 5-212 (352)
321 TIGR02561 HrpB1_HrpK type III 55.9 1.1E+02 0.0024 24.8 10.1 51 112-164 22-73 (153)
322 smart00638 LPD_N Lipoprotein N 55.8 2.5E+02 0.0053 28.9 25.2 102 28-135 308-411 (574)
323 KOG4077 Cytochrome c oxidase, 55.6 55 0.0012 25.5 6.0 47 398-444 67-113 (149)
324 COG3118 Thioredoxin domain-con 55.1 1.7E+02 0.0037 26.8 16.5 147 144-294 143-291 (304)
325 PF10366 Vps39_1: Vacuolar sor 55.0 91 0.002 23.6 8.4 26 138-163 42-67 (108)
326 KOG4648 Uncharacterized conser 54.8 39 0.00085 31.3 6.1 47 353-401 105-152 (536)
327 COG0457 NrfG FOG: TPR repeat [ 54.7 1.3E+02 0.0028 25.3 28.8 219 219-442 37-263 (291)
328 PF10579 Rapsyn_N: Rapsyn N-te 54.0 50 0.0011 23.3 5.2 46 427-472 18-65 (80)
329 COG4455 ImpE Protein of avirul 53.9 1.2E+02 0.0026 26.4 8.4 77 347-424 3-81 (273)
330 PF13512 TPR_18: Tetratricopep 53.7 1.2E+02 0.0025 24.4 11.4 74 111-185 21-97 (142)
331 PHA03100 ankyrin repeat protei 53.2 2.4E+02 0.0052 28.0 15.3 232 34-295 36-300 (480)
332 PF11846 DUF3366: Domain of un 53.1 71 0.0015 27.1 7.4 33 411-443 140-172 (193)
333 PF07719 TPR_2: Tetratricopept 53.0 37 0.00081 18.6 4.4 26 452-477 3-28 (34)
334 KOG0890 Protein kinase of the 52.7 5E+02 0.011 31.5 23.0 315 141-481 1389-1733(2382)
335 PRK09462 fur ferric uptake reg 52.3 91 0.002 25.2 7.5 62 369-431 6-68 (148)
336 PRK10564 maltose regulon perip 52.3 29 0.00063 31.6 4.9 30 138-167 260-289 (303)
337 KOG2908 26S proteasome regulat 52.1 1.6E+02 0.0036 27.4 9.5 78 313-390 78-166 (380)
338 KOG0991 Replication factor C, 52.0 1.7E+02 0.0037 25.9 12.4 83 210-300 135-217 (333)
339 PRK11639 zinc uptake transcrip 51.9 99 0.0021 25.7 7.8 58 21-79 17-74 (169)
340 cd00280 TRFH Telomeric Repeat 51.4 1.2E+02 0.0025 25.6 7.7 62 116-180 85-153 (200)
341 KOG1585 Protein required for f 51.3 1.8E+02 0.0039 25.9 16.8 205 33-263 34-250 (308)
342 COG0457 NrfG FOG: TPR repeat [ 51.2 1.5E+02 0.0032 24.9 28.3 186 44-232 37-229 (291)
343 PRK14136 recX recombination re 50.6 2.1E+02 0.0045 26.4 11.0 86 307-415 159-244 (309)
344 KOG0403 Neoplastic transformat 50.2 2.5E+02 0.0055 27.4 17.7 76 383-463 512-587 (645)
345 KOG4567 GTPase-activating prot 50.0 88 0.0019 28.7 7.4 58 260-322 263-320 (370)
346 PLN03025 replication factor C 49.7 2.2E+02 0.0048 26.5 10.8 87 362-451 161-260 (319)
347 PF13431 TPR_17: Tetratricopep 49.1 20 0.00043 20.4 2.3 22 134-155 12-33 (34)
348 TIGR02508 type_III_yscG type I 48.9 1.1E+02 0.0024 22.8 7.1 50 179-234 48-97 (115)
349 PF14669 Asp_Glu_race_2: Putat 48.7 1.7E+02 0.0037 24.9 15.6 58 243-300 135-206 (233)
350 PF14689 SPOB_a: Sensor_kinase 48.6 30 0.00065 23.1 3.4 23 455-477 28-50 (62)
351 PRK10564 maltose regulon perip 48.5 34 0.00074 31.2 4.7 45 96-140 252-297 (303)
352 PF11846 DUF3366: Domain of un 48.5 80 0.0017 26.8 7.0 52 357-408 120-172 (193)
353 COG5108 RPO41 Mitochondrial DN 48.5 2.3E+02 0.0049 29.3 10.5 93 280-372 33-130 (1117)
354 COG3898 Uncharacterized membra 48.4 2.6E+02 0.0056 26.9 28.9 291 33-339 85-392 (531)
355 PRK09857 putative transposase; 48.0 1.3E+02 0.0029 27.6 8.7 65 383-448 209-273 (292)
356 PF10579 Rapsyn_N: Rapsyn N-te 47.2 65 0.0014 22.8 4.9 46 357-402 18-65 (80)
357 PF13181 TPR_8: Tetratricopept 47.1 49 0.0011 18.2 4.4 26 452-477 3-28 (34)
358 KOG2168 Cullins [Cell cycle co 46.6 3.9E+02 0.0085 28.5 18.4 22 71-92 331-352 (835)
359 KOG2659 LisH motif-containing 46.6 2E+02 0.0044 25.2 9.0 73 96-170 22-99 (228)
360 PF02847 MA3: MA3 domain; Int 46.2 90 0.0019 23.6 6.4 24 349-372 6-29 (113)
361 KOG1464 COP9 signalosome, subu 46.0 2.3E+02 0.0049 25.6 17.1 27 346-372 192-218 (440)
362 PF07575 Nucleopor_Nup85: Nup8 45.9 1.3E+02 0.0028 30.9 9.1 78 120-199 390-467 (566)
363 smart00804 TAP_C C-terminal do 45.9 23 0.00051 23.7 2.5 24 464-487 39-62 (63)
364 PRK14963 DNA polymerase III su 45.6 2.7E+02 0.0058 28.1 11.0 45 362-408 178-223 (504)
365 PF13174 TPR_6: Tetratricopept 45.5 39 0.00085 18.3 3.3 23 456-478 6-28 (33)
366 TIGR01228 hutU urocanate hydra 45.5 1.6E+02 0.0034 29.0 8.8 22 460-481 403-424 (545)
367 PRK14958 DNA polymerase III su 45.2 3.2E+02 0.0069 27.6 11.5 35 371-407 191-225 (509)
368 COG5108 RPO41 Mitochondrial DN 45.2 1.4E+02 0.003 30.7 8.5 78 35-112 33-115 (1117)
369 COG3118 Thioredoxin domain-con 44.9 2.5E+02 0.0054 25.8 15.0 168 13-188 121-290 (304)
370 PRK14951 DNA polymerase III su 44.6 3.1E+02 0.0068 28.4 11.4 43 363-407 187-230 (618)
371 PF14689 SPOB_a: Sensor_kinase 43.7 66 0.0014 21.4 4.5 46 116-163 6-51 (62)
372 TIGR01503 MthylAspMut_E methyl 43.5 2.4E+02 0.0053 27.6 9.6 20 316-335 92-111 (480)
373 TIGR02508 type_III_yscG type I 43.4 1.4E+02 0.003 22.4 6.8 51 74-130 48-98 (115)
374 PF08870 DUF1832: Domain of un 43.4 80 0.0017 24.2 5.4 35 429-464 62-96 (113)
375 PF11768 DUF3312: Protein of u 43.1 3.6E+02 0.0079 27.1 11.7 95 139-234 412-507 (545)
376 PF03745 DUF309: Domain of unk 42.7 88 0.0019 20.9 4.9 16 182-197 11-26 (62)
377 PHA02798 ankyrin-like protein; 42.3 3.7E+02 0.0079 26.9 12.4 162 36-205 39-214 (489)
378 PF02847 MA3: MA3 domain; Int 42.3 1.3E+02 0.0028 22.6 6.8 61 314-376 6-68 (113)
379 PHA03100 ankyrin repeat protei 42.1 3.6E+02 0.0077 26.7 14.3 241 71-342 38-308 (480)
380 PF14162 YozD: YozD-like prote 41.8 31 0.00066 21.6 2.3 18 468-485 13-30 (57)
381 COG3898 Uncharacterized membra 41.1 3.4E+02 0.0073 26.1 25.3 120 352-479 270-392 (531)
382 COG2976 Uncharacterized protei 40.7 2.3E+02 0.0051 24.2 13.6 52 391-444 137-188 (207)
383 KOG4648 Uncharacterized conser 40.3 1.2E+02 0.0025 28.4 6.7 103 248-363 105-213 (536)
384 COG2405 Predicted nucleic acid 40.1 63 0.0014 25.6 4.4 45 415-460 110-154 (157)
385 KOG4567 GTPase-activating prot 40.0 1.9E+02 0.0042 26.6 7.9 58 365-427 263-320 (370)
386 PF10475 DUF2450: Protein of u 39.8 2.7E+02 0.0059 25.5 9.5 53 105-163 103-155 (291)
387 cd07153 Fur_like Ferric uptake 39.7 78 0.0017 24.1 5.1 47 386-432 6-52 (116)
388 PF11768 DUF3312: Protein of u 39.5 1.1E+02 0.0025 30.5 7.1 21 456-476 500-520 (545)
389 KOG1941 Acetylcholine receptor 39.4 3.4E+02 0.0074 25.8 12.7 126 140-265 127-271 (518)
390 PRK08691 DNA polymerase III su 39.4 3.9E+02 0.0085 28.1 11.1 45 362-408 181-226 (709)
391 COG1466 HolA DNA polymerase II 39.3 2.8E+02 0.006 26.1 9.7 23 461-483 219-241 (334)
392 KOG3807 Predicted membrane pro 39.1 2.1E+02 0.0045 26.6 8.1 116 218-344 229-345 (556)
393 PF09454 Vps23_core: Vps23 cor 39.1 78 0.0017 21.4 4.2 30 171-200 9-38 (65)
394 PF11838 ERAP1_C: ERAP1-like C 38.7 3.2E+02 0.007 25.2 22.1 27 277-303 203-229 (324)
395 KOG2297 Predicted translation 38.3 3.3E+02 0.0071 25.2 19.9 72 251-331 266-342 (412)
396 TIGR02561 HrpB1_HrpK type III 37.6 2.2E+02 0.0048 23.1 12.4 18 391-408 55-72 (153)
397 PRK09857 putative transposase; 37.4 2E+02 0.0044 26.5 8.1 27 456-482 246-272 (292)
398 TIGR03184 DNA_S_dndE DNA sulfu 37.3 1.1E+02 0.0024 23.1 5.2 36 429-464 61-98 (105)
399 cd07920 Pumilio Pumilio-family 37.3 3.4E+02 0.0074 25.1 13.8 24 209-232 202-225 (322)
400 PF12796 Ank_2: Ankyrin repeat 36.5 1.5E+02 0.0033 20.9 7.7 10 36-45 29-38 (89)
401 PF09454 Vps23_core: Vps23 cor 36.0 67 0.0015 21.7 3.6 50 413-463 6-55 (65)
402 PF01475 FUR: Ferric uptake re 35.8 69 0.0015 24.7 4.3 45 420-464 12-56 (120)
403 PRK06645 DNA polymerase III su 35.7 4.8E+02 0.01 26.4 11.2 44 362-407 190-234 (507)
404 KOG2063 Vacuolar assembly/sort 35.6 6.1E+02 0.013 27.6 16.6 116 172-287 506-638 (877)
405 PF08542 Rep_fac_C: Replicatio 35.5 44 0.00095 24.0 2.9 49 413-463 3-51 (89)
406 KOG2063 Vacuolar assembly/sort 34.8 6.3E+02 0.014 27.5 16.1 43 141-183 597-639 (877)
407 PF12793 SgrR_N: Sugar transpo 34.1 1.3E+02 0.0029 23.0 5.4 61 412-474 16-94 (115)
408 PF08870 DUF1832: Domain of un 33.6 1.7E+02 0.0037 22.4 5.9 90 11-114 5-96 (113)
409 PHA02798 ankyrin-like protein; 33.6 2.5E+02 0.0054 28.1 8.9 50 329-380 88-140 (489)
410 PHA02989 ankyrin repeat protei 33.2 5.1E+02 0.011 25.9 19.9 264 16-298 17-309 (494)
411 COG2178 Predicted RNA-binding 32.4 3.2E+02 0.0069 23.3 10.6 17 461-477 132-148 (204)
412 TIGR02328 conserved hypothetic 31.9 51 0.0011 24.9 2.6 63 421-485 8-70 (120)
413 TIGR03581 EF_0839 conserved hy 31.5 2E+02 0.0042 25.0 6.3 43 365-407 192-235 (236)
414 cd08819 CARD_MDA5_2 Caspase ac 31.4 2E+02 0.0044 20.8 7.5 15 148-162 49-63 (88)
415 PRK09462 fur ferric uptake reg 31.0 2.8E+02 0.0061 22.3 8.0 35 151-185 33-67 (148)
416 TIGR03581 EF_0839 conserved hy 31.0 1.6E+02 0.0034 25.5 5.7 46 432-477 189-235 (236)
417 COG5187 RPN7 26S proteasome re 31.0 4.2E+02 0.0091 24.3 9.8 144 330-477 58-219 (412)
418 cd07153 Fur_like Ferric uptake 30.4 1.2E+02 0.0026 23.0 4.9 16 45-60 15-30 (116)
419 COG0001 HemL Glutamate-1-semia 30.4 54 0.0012 31.7 3.3 69 111-179 182-272 (432)
420 PRK07452 DNA polymerase III su 30.3 4.5E+02 0.0098 24.4 9.6 80 366-449 138-233 (326)
421 PF12796 Ank_2: Ankyrin repeat 29.8 2E+02 0.0044 20.2 6.9 14 472-485 74-87 (89)
422 PF07218 RAP1: Rhoptry-associa 29.6 6E+02 0.013 25.6 11.9 134 325-477 595-756 (782)
423 PF07443 HARP: HepA-related pr 29.5 33 0.00072 22.2 1.2 34 43-76 5-38 (55)
424 KOG2659 LisH motif-containing 28.4 4.1E+02 0.0089 23.3 9.2 99 340-440 21-128 (228)
425 PRK00117 recX recombination re 28.4 3.2E+02 0.007 22.1 13.8 13 224-236 78-90 (157)
426 KOG3807 Predicted membrane pro 28.3 3.7E+02 0.0079 25.1 7.9 47 322-370 287-336 (556)
427 PRK14136 recX recombination re 28.2 4.9E+02 0.011 24.1 14.0 34 133-168 160-193 (309)
428 KOG2908 26S proteasome regulat 28.1 5.1E+02 0.011 24.4 9.4 79 277-355 77-166 (380)
429 TIGR01503 MthylAspMut_E methyl 27.9 6E+02 0.013 25.1 11.0 164 256-434 70-259 (480)
430 PRK07764 DNA polymerase III su 27.9 8.1E+02 0.018 26.6 11.9 97 328-448 183-280 (824)
431 smart00028 TPR Tetratricopepti 27.6 93 0.002 15.7 3.2 23 209-231 5-27 (34)
432 PF11817 Foie-gras_1: Foie gra 27.4 1.8E+02 0.0039 26.0 6.0 58 420-477 183-245 (247)
433 COG2137 OraA Uncharacterized p 26.9 3.8E+02 0.0082 22.5 12.8 99 84-186 54-153 (174)
434 PF09868 DUF2095: Uncharacteri 26.7 1.6E+02 0.0034 22.5 4.4 27 35-61 66-92 (128)
435 cd08315 Death_TRAILR_DR4_DR5 D 26.4 2.7E+02 0.0058 20.6 6.0 48 396-445 47-94 (96)
436 COG4003 Uncharacterized protei 26.4 1.2E+02 0.0026 21.4 3.5 26 350-375 36-61 (98)
437 COG5210 GTPase-activating prot 26.2 6.8E+02 0.015 25.2 10.8 131 16-150 363-494 (496)
438 COG2976 Uncharacterized protei 25.4 4.4E+02 0.0094 22.7 12.7 141 49-199 38-188 (207)
439 COG3947 Response regulator con 25.4 5.4E+02 0.012 23.7 18.9 42 256-299 149-190 (361)
440 PF03943 TAP_C: TAP C-terminal 25.3 22 0.00048 22.6 -0.1 25 463-487 26-50 (51)
441 cd08819 CARD_MDA5_2 Caspase ac 25.2 2.7E+02 0.0059 20.2 6.6 16 217-232 48-63 (88)
442 PF09477 Type_III_YscG: Bacter 24.8 3.2E+02 0.0068 20.8 8.3 77 151-234 22-98 (116)
443 PF10155 DUF2363: Uncharacteri 24.7 3.5E+02 0.0075 21.2 10.8 47 221-267 79-125 (126)
444 PF01475 FUR: Ferric uptake re 24.6 1.9E+02 0.0042 22.1 5.1 15 81-95 23-37 (120)
445 COG0819 TenA Putative transcri 24.4 4.8E+02 0.01 22.8 8.7 30 125-154 99-128 (218)
446 PF11838 ERAP1_C: ERAP1-like C 24.3 5.7E+02 0.012 23.6 22.6 109 291-404 146-261 (324)
447 PF08564 CDC37_C: Cdc37 C term 24.1 91 0.002 23.2 2.8 21 72-92 28-48 (99)
448 KOG2066 Vacuolar assembly/sort 24.0 8.9E+02 0.019 25.8 27.1 22 141-162 511-532 (846)
449 COG5187 RPN7 26S proteasome re 23.7 5.8E+02 0.013 23.5 15.4 146 167-316 78-233 (412)
450 COG5159 RPN6 26S proteasome re 23.6 5.8E+02 0.013 23.4 17.2 136 36-171 9-165 (421)
451 PRK06585 holA DNA polymerase I 23.4 6.2E+02 0.014 23.7 9.5 31 452-483 214-244 (343)
452 COG2405 Predicted nucleic acid 23.4 1.8E+02 0.004 23.1 4.4 36 109-144 118-153 (157)
453 PRK14956 DNA polymerase III su 23.0 7.7E+02 0.017 24.7 12.2 90 338-451 195-284 (484)
454 COG3947 Response regulator con 23.0 6E+02 0.013 23.4 18.0 70 312-382 281-355 (361)
455 PRK07003 DNA polymerase III su 22.9 9.7E+02 0.021 25.8 11.0 45 361-407 180-225 (830)
456 PRK14958 DNA polymerase III su 22.8 8E+02 0.017 24.8 11.5 36 99-135 245-280 (509)
457 PF09868 DUF2095: Uncharacteri 22.5 3E+02 0.0066 21.0 5.2 25 71-95 67-91 (128)
458 PF02607 B12-binding_2: B12 bi 22.4 2.1E+02 0.0045 19.8 4.5 27 78-104 14-40 (79)
459 cd07229 Pat_TGL3_like Triacylg 22.4 6.2E+02 0.013 24.5 8.7 28 443-470 179-206 (391)
460 KOG0989 Replication factor C, 22.4 6.4E+02 0.014 23.5 10.7 24 426-449 266-289 (346)
461 COG2137 OraA Uncharacterized p 22.1 4.7E+02 0.01 21.9 12.7 104 54-161 59-164 (174)
462 cd08317 Death_ank Death domain 21.8 2.6E+02 0.0055 19.9 4.8 39 396-436 44-82 (84)
463 PRK13342 recombination factor 21.8 7.5E+02 0.016 24.1 16.8 46 116-163 153-202 (413)
464 PF05944 Phage_term_smal: Phag 21.6 3.1E+02 0.0068 21.7 5.6 30 32-61 50-79 (132)
465 PLN03192 Voltage-dependent pot 21.6 1.1E+03 0.023 25.7 13.5 58 209-274 623-682 (823)
466 COG1747 Uncharacterized N-term 21.5 8.5E+02 0.018 24.6 22.1 165 273-444 64-234 (711)
467 KOG0403 Neoplastic transformat 21.5 7.9E+02 0.017 24.2 20.9 73 313-392 512-586 (645)
468 PRK11906 transcriptional regul 21.3 8.1E+02 0.017 24.3 15.4 144 291-440 274-432 (458)
469 PF09670 Cas_Cas02710: CRISPR- 21.2 7.5E+02 0.016 23.8 12.6 50 286-336 142-195 (379)
470 PHA02874 ankyrin repeat protei 21.1 7.8E+02 0.017 24.0 12.0 130 4-157 7-143 (434)
471 PF12926 MOZART2: Mitotic-spin 20.9 3.3E+02 0.0073 19.7 8.3 43 226-268 29-71 (88)
472 PF03745 DUF309: Domain of unk 20.9 2.7E+02 0.0058 18.6 5.6 47 321-367 10-61 (62)
473 cd01670 Death Death Domain: a 20.8 2.6E+02 0.0056 19.2 4.7 39 396-436 38-76 (79)
474 KOG0508 Ankyrin repeat protein 20.7 8.4E+02 0.018 24.2 19.9 105 6-123 92-203 (615)
475 PF11817 Foie-gras_1: Foie gra 20.7 5.1E+02 0.011 23.0 7.6 54 177-230 185-243 (247)
476 cd00245 Glm_e Coenzyme B12-dep 20.7 2.5E+02 0.0055 27.4 5.8 84 223-310 109-202 (428)
477 KOG0686 COP9 signalosome, subu 20.2 8.1E+02 0.017 23.8 12.8 63 276-338 151-215 (466)
478 KOG3636 Uncharacterized conser 20.1 8.3E+02 0.018 23.9 14.0 88 199-286 177-271 (669)
479 smart00638 LPD_N Lipoprotein N 20.1 9.5E+02 0.021 24.6 26.2 64 99-167 309-372 (574)
480 PF07827 KNTase_C: KNTase C-te 20.1 2.9E+02 0.0063 22.0 4.9 74 100-184 59-132 (143)
481 PHA02989 ankyrin repeat protei 20.1 8.8E+02 0.019 24.2 18.7 82 51-135 17-103 (494)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.4e-79 Score=631.53 Aligned_cols=484 Identities=22% Similarity=0.350 Sum_probs=430.8
Q ss_pred hhhHHhcCChhhHHHHHHHHHhCCCC--------------------------------CChhhHHHHHHHHHhcCChhHH
Q 011378 2 VNALCKDHKIDSAKMFLCEMEQKGVY--------------------------------PDTVTYNTLINAYCREGFLEEA 49 (487)
Q Consensus 2 i~~~~~~~~~~~a~~~~~~~~~~g~~--------------------------------p~~~~~~~ll~~~~~~~~~~~a 49 (487)
++.|++.|+++.|.++|++|.+.|+. ||..+|+.+|.+|++.|+++.|
T Consensus 377 y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A 456 (1060)
T PLN03218 377 YNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGA 456 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHH
Confidence 45566677777777777777776643 7888899999999999999999
Q ss_pred HHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 011378 50 FQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRR 129 (487)
Q Consensus 50 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 129 (487)
.++|+.|.+.|+.||..+|+++|++|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhh
Q 011378 130 GVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKS--AGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVT 207 (487)
Q Consensus 130 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 207 (487)
|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 9999999999999999999999999999999976 67889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHc
Q 011378 208 YNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCK 287 (487)
Q Consensus 208 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 287 (487)
||++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|.+.|+.||..+|++||.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 011378 288 VGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEF 367 (487)
Q Consensus 288 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 367 (487)
.|++++|.++|++|...|+.||..+|+.||.+|++.|++++|.++|++|...|+.||..||+++|.+|++.|+++.|.++
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhc----c-------------------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011378 368 LSKMVSEGVDPDSISYNTLINGFVR----E-------------------ENMDKAFALVSKMENQGLVPDVITYNVILTG 424 (487)
Q Consensus 368 ~~~m~~~g~~p~~~~~~~li~~~~~----~-------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (487)
+++|.+.|+.||..+|++|+..|.+ . +..+.|..+|++|.+.|+.||..||+.+|..
T Consensus 777 ~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 777 LSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGC 856 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 9999999999999999999876542 1 2346788899999999999999999999987
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCCC
Q 011378 425 FCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQRGFVPDDAF 487 (487)
Q Consensus 425 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 487 (487)
+++.+..+.+..++++|...+..|+..+|+++|+++... .++|+.++++|.+.|+.|+-.|
T Consensus 857 l~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~ 917 (1060)
T PLN03218 857 LQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSF 917 (1060)
T ss_pred hcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCccc
Confidence 788888888888888888888889999999999988533 4689999999999999998753
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-75 Score=603.79 Aligned_cols=457 Identities=20% Similarity=0.330 Sum_probs=441.2
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHH
Q 011378 26 VYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGL-KPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYN 104 (487)
Q Consensus 26 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 104 (487)
-.++...|..++..+++.|++++|+++|+.|...|+ .|+..+++.++.+|.+.|..++|.++|..|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 356778899999999999999999999999999986 56778888999999999999999999999974 9999999
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 011378 105 TLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNG 184 (487)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 184 (487)
.+|.+|++.|+++.|.++|++|.+.|+.||..+|+++|.+|++.|+++.|.++|++|.+.|+.||..+|+.||++|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011378 185 FVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLE--RGVFPDFYTFTTLIHGHCKDGNMNKALNL 262 (487)
Q Consensus 185 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~t~~~li~~~~~~g~~~~a~~~ 262 (487)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..||+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 68999999999999999999999999999
Q ss_pred HHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011378 263 FDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIK 342 (487)
Q Consensus 263 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 342 (487)
|+.|.+.|+.|+..+|+++|.+|++.|++++|.++|.+|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011378 343 PTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVIL 422 (487)
Q Consensus 343 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (487)
||..+|++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-----------------------cCCHHHHHHHHHHHHHC
Q 011378 423 TGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVS-----------------------QNNLKEAFRFHDEMLQR 479 (487)
Q Consensus 423 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~-----------------------~~~~~~a~~~~~~m~~~ 479 (487)
.+|++.|++++|.+++.+|.+.|+.||..+|++++..|.. .++.+.|..+|++|++.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999976542 23457899999999999
Q ss_pred CCCCCCC
Q 011378 480 GFVPDDA 486 (487)
Q Consensus 480 g~~p~~~ 486 (487)
|++||..
T Consensus 842 Gi~Pd~~ 848 (1060)
T PLN03218 842 GTLPTME 848 (1060)
T ss_pred CCCCCHH
Confidence 9999963
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-73 Score=601.26 Aligned_cols=469 Identities=22% Similarity=0.317 Sum_probs=312.4
Q ss_pred ChhhHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCC
Q 011378 1 MVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGR 80 (487)
Q Consensus 1 li~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 80 (487)
||.+|++.|+++.|.++|++|.+.|++||..||++++++|++.+++..+.+++..|...|+.||..+||++|.+|++.|+
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 46777888888888888888877788787777777666666666666666666666666666666666666666666666
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHH
Q 011378 81 CDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFRE 160 (487)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 160 (487)
++.|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..
T Consensus 238 ~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 313 (857)
T PLN03077 238 VVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313 (857)
T ss_pred HHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 666666666665 3566666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011378 161 MKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDF 240 (487)
Q Consensus 161 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 240 (487)
|.+.|+.||..+|++||++|++.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~ 389 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc
Confidence 6666666666666666666666666666666666664 255666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011378 241 YTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGY 320 (487)
Q Consensus 241 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 320 (487)
.||+++|.+|++.|+++.|.++++.|.+.|+.|+..+||+||++|+++|++++|.++|++|.. ||..+|+.+|.+|
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~ 465 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGL 465 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666665542 4555555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC------------------------
Q 011378 321 CSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGV------------------------ 376 (487)
Q Consensus 321 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~------------------------ 376 (487)
++.|+.++|..+|++|.. +++||..||+.+|.+|++.|+.+.+.+++..+.+.|+
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 555555555555555543 3555555555555555555555555555444444444
Q ss_pred ------CCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCC
Q 011378 377 ------DPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMI-EKGLNPD 449 (487)
Q Consensus 377 ------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~ 449 (487)
.||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|. ..|+.|+
T Consensus 545 ~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 545 NQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 456667777777777777777777777777777777777777777777777777777777777777 5677777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC
Q 011378 450 RSTYTTLINGHVSQNNLKEAFRFHDEMLQRGFVPDD 485 (487)
Q Consensus 450 ~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 485 (487)
..+|++|+++|++.|++++|.+++++| +++||.
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~ 657 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM---PITPDP 657 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCH
Confidence 777777777777777777777777777 466764
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-72 Score=580.78 Aligned_cols=468 Identities=22% Similarity=0.312 Sum_probs=450.0
Q ss_pred ChhhHHhcCChhhHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcC
Q 011378 1 MVNALCKDHKIDSAKMFLCEMEQKG-VYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKG 79 (487)
Q Consensus 1 li~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 79 (487)
+|..|++.|+++.|.++|+.|...+ +.||..+|+.++.+|++.++++.+.+++..|...|+.||..+|+.+|++|++.|
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence 3678999999999999999998764 789999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHH
Q 011378 80 RCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFR 159 (487)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 159 (487)
+++.|.++|++|.+ ||..+||+++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++.
T Consensus 173 ~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 173 MLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred CHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999999974 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011378 160 EMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPD 239 (487)
Q Consensus 160 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 239 (487)
.+.+.|+.||..+|++||++|++.|++++|.++|++|.+ +|..+||++|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999964 6899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011378 240 FYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILING 319 (487)
Q Consensus 240 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 319 (487)
..||++++.+|++.|++++|.++++.|.+.|+.||..+||+||++|+++|++++|.++|++|. .||..|||.||.+
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~ 400 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAG 400 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 4899999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCChhhHHHHHHHHhccCCHHH
Q 011378 320 YCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS-EGVDPDSISYNTLINGFVREENMDK 398 (487)
Q Consensus 320 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~~~~~ 398 (487)
|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|+.++|.++|+.|.+ .|+.|+..+|++|+++|++.|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 999999999999999999999999999999999999999999999999999986 6999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 399 AFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 399 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
|.+++++| +..|+..+|++|+.+|+..|+++.|..+++++. ++.|+ ..+|..|++.|++.|++++|.+++++|.
T Consensus 481 A~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 481 AYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99998765 678999999999999999999999999999985 45665 6799999999999999999999999999
Q ss_pred HCCCCCCC
Q 011378 478 QRGFVPDD 485 (487)
Q Consensus 478 ~~g~~p~~ 485 (487)
+.|+++.+
T Consensus 556 ~~g~~k~~ 563 (697)
T PLN03081 556 RKGLSMHP 563 (697)
T ss_pred HcCCccCC
Confidence 99997654
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-72 Score=590.84 Aligned_cols=468 Identities=20% Similarity=0.332 Sum_probs=372.4
Q ss_pred ChhhHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCC
Q 011378 1 MVNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGR 80 (487)
Q Consensus 1 li~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 80 (487)
+|++|++.++++.+.+++..|.+.|+.||..+||++|.+|++.|+++.|.++|+.|.. ||..+||++|++|++.|+
T Consensus 193 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~ 268 (857)
T PLN03077 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGE 268 (857)
T ss_pred HHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCC
Confidence 3566777777777777777777777777777777777777777777777777777753 577777777777777777
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHH
Q 011378 81 CDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFRE 160 (487)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 160 (487)
+++|.++|.+|.+.|+.||..||+.+|.+|++.|+++.+.+++..|.+.|+.||..+||++|.+|++.|++++|.++|++
T Consensus 269 ~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 348 (857)
T PLN03077 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011378 161 MKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDF 240 (487)
Q Consensus 161 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 240 (487)
|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|+++.+.++++.|.+.|+.|+.
T Consensus 349 m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~ 424 (857)
T PLN03077 349 ME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424 (857)
T ss_pred CC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch
Confidence 75 36677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011378 241 YTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGY 320 (487)
Q Consensus 241 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 320 (487)
.+|++||++|++.|++++|.++|+.|.+ +|..+||++|.+|++.|+.++|.++|++|.. ++.||..||+.+|.+|
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~ 499 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSAC 499 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHH
Confidence 7777777777777777777777777653 4666777777777777777777777777754 4666666666666555
Q ss_pred HhcCCHHHHHHHHHHHHhCCC------------------------------CCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 011378 321 CSMGHVTEAFRLWYEMVGKGI------------------------------KPTLVSCNTIIKGYCRSGDASKADEFLSK 370 (487)
Q Consensus 321 ~~~~~~~~a~~~~~~m~~~~~------------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 370 (487)
++.|.++.+.+++..|.+.|+ +||..+||++|.+|++.|+.++|.++|++
T Consensus 500 ~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555555554444443 67888999999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH-hCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011378 371 MVSEGVDPDSISYNTLINGFVREENMDKAFALVSKME-NQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD 449 (487)
Q Consensus 371 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 449 (487)
|.+.|+.||..||+++|.+|.+.|.+++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++| +++||
T Consensus 580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd 656 (857)
T PLN03077 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPD 656 (857)
T ss_pred HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCC
Confidence 9999999999999999999999999999999999998 6799999999999999999999999999999998 48999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC
Q 011378 450 RSTYTTLINGHVSQNNLKEAFRFHDEMLQRGFVPDDA 486 (487)
Q Consensus 450 ~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 486 (487)
..+|++|+.+|..+|+.+.+....+++.+ +.|++.
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~ 691 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSV 691 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCc
Confidence 99999999999999999999988888874 577653
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.1e-68 Score=546.69 Aligned_cols=443 Identities=19% Similarity=0.345 Sum_probs=426.4
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHH
Q 011378 26 VYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGK-GLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYN 104 (487)
Q Consensus 26 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 104 (487)
..++..+|+.+|.++++.|++++|+++|+.|... ++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 3456679999999999999999999999999876 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 011378 105 TLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNG 184 (487)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 184 (487)
.|+..|++.|+++.|.++|++|. .||.++||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.++++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999996 48999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011378 185 FVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFD 264 (487)
Q Consensus 185 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~ 264 (487)
....+.+++..+.+.|+.+|..+||+||++|++.|++++|.++|++|.+ +|..+||+||.+|++.|+.++|+++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999964 689999999999999999999999999
Q ss_pred HHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011378 265 IMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPT 344 (487)
Q Consensus 265 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 344 (487)
.|.+.|+.||..||+++|++|++.|++++|.+++.+|.+.|+.||..+|+.||++|++.|++++|.++|++|. +||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999995 589
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh-CCCCCCHhhHHHHHH
Q 011378 345 LVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMEN-QGLVPDVITYNVILT 423 (487)
Q Consensus 345 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~ 423 (487)
..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+++|+
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999975 699999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC
Q 011378 424 GFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQRGFVPDD 485 (487)
Q Consensus 424 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 485 (487)
+|+++|++++|.+++++| ++.|+..+|+.|+.+|..+|+++.|.+++++|. ++.|+.
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~ 527 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEK 527 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCC
Confidence 999999999999998765 789999999999999999999999999999996 666764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=5.7e-26 Score=243.83 Aligned_cols=460 Identities=14% Similarity=0.081 Sum_probs=343.3
Q ss_pred hhHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChh
Q 011378 3 NALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCD 82 (487)
Q Consensus 3 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 82 (487)
..+.+.|+++.|..+++.+.... +++..++..+...+.+.|++++|.+.|+.+.+.. +.+...+..+...+...|+++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 34566677777777777765532 3455677777777777788888887777765532 223345666667777778888
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 011378 83 RAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMK 162 (487)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 162 (487)
+|.+.++++.+.. +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..+...+.+.|++++|..+++.+.
T Consensus 517 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 517 DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888887776543 2356677777777777888888888887776543 2345566677778888888888888888876
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 011378 163 SAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYT 242 (487)
Q Consensus 163 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t 242 (487)
... ..+..+|..+...+.+.|+.++|...++.+.+.. +.+...+..+...+.+.|+++.|...|+++.+.. +.+..+
T Consensus 595 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 671 (899)
T TIGR02917 595 DAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEA 671 (899)
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 532 3456678888888888888888888888876643 2355667778888888888888888888877642 335677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011378 243 FTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCS 322 (487)
Q Consensus 243 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 322 (487)
+..+...+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|.+.|..+...+ |+..++..+..++..
T Consensus 672 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHH
Confidence 8888888888888888888888877654 3355567777788888888888888888877654 445677778888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHH
Q 011378 323 MGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFAL 402 (487)
Q Consensus 323 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 402 (487)
.|++++|...++.+.... +.+...+..+...|...|+.++|.+.++++.+.. +++...++.+...+...|+ ++|...
T Consensus 749 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~ 825 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEY 825 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHH
Confidence 888888888888877643 5567778888888888899999999998887654 3567788888888888888 778888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 403 VSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 403 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
+++..+.. .-+...+..+...+.+.|++++|...++++.+.+.. +..+|..+...+...|++++|.+++++|+
T Consensus 826 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 826 AEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88876542 224456777788888999999999999999886643 78889999999999999999999999886
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=5.2e-24 Score=228.67 Aligned_cols=463 Identities=13% Similarity=0.094 Sum_probs=281.7
Q ss_pred hHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCC-----------------------
Q 011378 4 ALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKG----------------------- 60 (487)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----------------------- 60 (487)
.+.+.|+++.|..+++++.+.. +.+...+..+...+...|++++|.+.++......
T Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 372 AYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKA 450 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHH
Confidence 4555666666666666655432 1133444445555555555555555555443321
Q ss_pred ----------CCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 011378 61 ----------LKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRG 130 (487)
Q Consensus 61 ----------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 130 (487)
.+++..+|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 529 (899)
T TIGR02917 451 LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID 529 (899)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 12233445555555555555555555555554321 1223344444555555555555555555554432
Q ss_pred CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHH
Q 011378 131 VAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNT 210 (487)
Q Consensus 131 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 210 (487)
+.+..++..+...+.+.|+.++|..+++++...+ ..+...+..+...+.+.|+.++|..+++.+.+. .+.+...|..
T Consensus 530 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~ 606 (899)
T TIGR02917 530 -PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLM 606 (899)
T ss_pred -cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHH
Confidence 2234455555556666666666666666654432 223345555666666666666666666666543 2344556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCC
Q 011378 211 ILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGE 290 (487)
Q Consensus 211 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 290 (487)
+..++.+.|++++|...|+++.+.. +.+...+..+...+...|+.++|..+|+.+.+.. +.+..++..+...+...|+
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 6677777777777777776665532 2345556666666777777777777776655432 2234566667777777777
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 011378 291 MEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSK 370 (487)
Q Consensus 291 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 370 (487)
+++|.+++..+...+ +++...+..+...+...|++++|...++.+...+ |+..++..+...+.+.|+.++|.+.++.
T Consensus 685 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 685 TESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777665543 3345566667777777777777777777766543 4445666677777777777777777777
Q ss_pred HHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011378 371 MVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR 450 (487)
Q Consensus 371 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 450 (487)
+.+.. +.+...+..+...|.+.|+.++|.+.++++.+.. .+++..++.+...+.+.|+ .+|...+++..... .-+.
T Consensus 762 ~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~ 837 (899)
T TIGR02917 762 WLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIP 837 (899)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCc
Confidence 66532 3456677777777777888888888887776543 3456677777777777777 77777777776532 1234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011378 451 STYTTLINGHVSQNNLKEAFRFHDEMLQRG 480 (487)
Q Consensus 451 ~ty~~l~~~~~~~~~~~~a~~~~~~m~~~g 480 (487)
.++..+...+...|++++|.++++++++.+
T Consensus 838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 838 AILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 466677778888899999999998888754
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=7e-20 Score=177.22 Aligned_cols=305 Identities=15% Similarity=0.155 Sum_probs=169.2
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCC---hhhHHHHHHHHHhcCC
Q 011378 144 IFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMD---VVTYNTILNGLCRAKM 220 (487)
Q Consensus 144 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~~~ 220 (487)
.+...|++++|...|.++.+.+ ..+..++..+...+.+.|++++|..+++.+.+.+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455666777777777666542 11233555566666666666666666666554322111 1234455555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHH
Q 011378 221 LTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWAD 300 (487)
Q Consensus 221 ~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 300 (487)
++.|..+|+++.+.. +++..++..+...+.+.|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 555555555554431 22344555555555555555555555555443321111000
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 011378 301 MISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDS 380 (487)
Q Consensus 301 m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 380 (487)
....+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|+.++|.+.++++...+-....
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 01123344445555566666666666555432 223344555556666666666666666666543211123
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011378 381 ISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGH 460 (487)
Q Consensus 381 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~ 460 (487)
.+++.+..+|.+.|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~ 325 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence 45566666777777777777777766553 455555666667777777777777777766543 56777777666665
Q ss_pred Hh---cCCHHHHHHHHHHHHHCCCCCCCC
Q 011378 461 VS---QNNLKEAFRFHDEMLQRGFVPDDA 486 (487)
Q Consensus 461 ~~---~~~~~~a~~~~~~m~~~g~~p~~~ 486 (487)
.. .|+.++++.++++|.+.+++|++.
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 53 346677777777777777766653
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=4.6e-19 Score=171.50 Aligned_cols=313 Identities=13% Similarity=0.114 Sum_probs=235.2
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCC
Q 011378 109 ESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD---NVLYTIIINGYCRNGF 185 (487)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~ 185 (487)
.+...|++++|...|+++.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4567899999999999998863 23556788899999999999999999999987543222 2468888999999999
Q ss_pred HHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 011378 186 VLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPD----FYTFTTLIHGHCKDGNMNKALN 261 (487)
Q Consensus 186 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~t~~~li~~~~~~g~~~~a~~ 261 (487)
.++|..+++++.+. .+.+..+++.+...+.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|+.++|..
T Consensus 123 ~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999875 335677899999999999999999999999987653332 1235567777888899999999
Q ss_pred HHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011378 262 LFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGI 341 (487)
Q Consensus 262 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 341 (487)
.|+.+.+.. +.+...+..+...+.+.|++++|.+.|.++..........+++.+..+|...|++++|...++.+...
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 998877643 22344666777888888888888888888775432222456677778888888888888888877654
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCCHhhH
Q 011378 342 KPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVR---EENMDKAFALVSKMENQGLVPDVITY 418 (487)
Q Consensus 342 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~ 418 (487)
.|+...+..+...+.+.|+.++|..+++++.+. .|+..+++.++..+.. .|+.+++..++++|.+.+++|++.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-- 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR-- 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC--
Confidence 456566677777788888888888888777654 4777777777776664 447777788888777777777666
Q ss_pred HHHHHHHHhcCChHHH
Q 011378 419 NVILTGFCRQGRMHDS 434 (487)
Q Consensus 419 ~~li~~~~~~g~~~~a 434 (487)
..|.++|-..+.
T Consensus 355 ----~~c~~cg~~~~~ 366 (389)
T PRK11788 355 ----YRCRNCGFTART 366 (389)
T ss_pred ----EECCCCCCCCcc
Confidence 235566654443
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=2.5e-17 Score=147.32 Aligned_cols=362 Identities=17% Similarity=0.205 Sum_probs=257.9
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 011378 98 PDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIII 177 (487)
Q Consensus 98 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 177 (487)
-+..||.++|.++|+....+.|.+++++-.....+.+..+||.+|.+-+-.-. .+++.+|.+..+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence 46678899999999999999999999888888788888899998876543222 67888888888999999999999
Q ss_pred HHHHhcCCHHH----HHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCCC----CHHHHH
Q 011378 178 NGYCRNGFVLE----ALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTE-ADDLFNEMLE----RGVFP----DFYTFT 244 (487)
Q Consensus 178 ~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~~~~~----~~~t~~ 244 (487)
+..++.|+++. +++++.+|++-|+.|...+|..+|..+++.++... +..++.+... +.++| |..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999987664 46678888999999999999999999988887643 4444444332 33333 445677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCe---eehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011378 245 TLIHGHCKDGNMNKALNLFDIMTQK----SIKPDI---VTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILI 317 (487)
Q Consensus 245 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li 317 (487)
..|..|.+..+.+.|.++...+... -+.|+. .-|..+....|....++...+.+..|.-+-.-|+..+..-++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 8888888999999999888776532 244442 236778888899999999999999999888888888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc--CC
Q 011378 318 NGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVRE--EN 395 (487)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--~~ 395 (487)
++....|+++-.-++|.+++..|.+-+...- ++++..|......|+..--.-|-.+.++. ..
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLLARDKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876643333322 33333343334344433222222222211 11
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011378 396 MDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKG----LNPDRSTYTTLINGHVSQNNLKEAFR 471 (487)
Q Consensus 396 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~ty~~l~~~~~~~~~~~~a~~ 471 (487)
.+..+.-..+|....+. ....+.+.-.+.+.|+.++|+++|..+..++ ..|.......+++.-.+.++...|..
T Consensus 505 ~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 22223334555554443 3456777778888888888888888876544 23555555577788888888888888
Q ss_pred HHHHHHHCCC
Q 011378 472 FHDEMLQRGF 481 (487)
Q Consensus 472 ~~~~m~~~g~ 481 (487)
.++-|...++
T Consensus 583 ~lQ~a~~~n~ 592 (625)
T KOG4422|consen 583 VLQLASAFNL 592 (625)
T ss_pred HHHHHHHcCc
Confidence 8888876654
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=4.6e-15 Score=161.30 Aligned_cols=431 Identities=14% Similarity=0.099 Sum_probs=317.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCC-CccchHHHHHHHHhcCChhhHHHHHHHHHHCCCC-CCHHHHHHH--------
Q 011378 37 INAYCREGFLEEAFQLMNSMSGKGLKP-GVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLS-PDTATYNTL-------- 106 (487)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~l-------- 106 (487)
-..+...|++++|...|+..... .| +...+..+-..+.+.|++++|...|++..+..-. +....|..+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45667889999999999988764 34 5677888888999999999999999998764321 122222222
Q ss_pred ----HHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHH
Q 011378 107 ----LVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD-NVLYTIIINGYC 181 (487)
Q Consensus 107 ----l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~ 181 (487)
-..+.+.|++++|...|++..+.. +.+...+..+-..+.+.|++++|.+.|++..+.. |+ ...+..+...|.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 235678899999999999998753 2345667778889999999999999999988643 43 445566666664
Q ss_pred hcCCHHHHHHHHHHHHHcCC--------cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011378 182 RNGFVLEALKMRDEMLEKGC--------VMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKD 253 (487)
Q Consensus 182 ~~~~~~~a~~~~~~m~~~g~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~ 253 (487)
.+..++|..+++.+....- ......+..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 4577888888765432210 0112245566777888999999999999988753 22567778888999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChh---------hHHHHHHHHHhc
Q 011378 254 GNMNKALNLFDIMTQKSIKP-DIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYI---------SYGILINGYCSM 323 (487)
Q Consensus 254 g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---------t~~~li~~~~~~ 323 (487)
|+.++|...++...+.. | +...+..+...+.+.++.++|...+..+......++.. .+..+...+...
T Consensus 509 G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred CCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 99999999999877532 3 33334444455677899999999988764433323221 123456678889
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 011378 324 GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALV 403 (487)
Q Consensus 324 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 403 (487)
|+.++|..+++. .+.+...+..+-..+.+.|+.++|...+++..+.. +.+...+..+...|...|+.++|.+.+
T Consensus 587 G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 587 GKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999998872 34455667778888999999999999999988753 234668889999999999999999999
Q ss_pred HHHHhCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 404 SKMENQGLVPD-VITYNVILTGFCRQGRMHDSELILWRMIEKGLN--P---DRSTYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 404 ~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p---~~~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
+...+. .|+ ...+..+...+.+.|++++|..+++++....-. | +...+..+.+.+...|++++|...+++-.
T Consensus 661 ~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 661 AKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 977653 444 455666777888999999999999998764321 2 22456666788899999999999988775
Q ss_pred -HCCCCCC
Q 011378 478 -QRGFVPD 484 (487)
Q Consensus 478 -~~g~~p~ 484 (487)
..|+.|+
T Consensus 739 ~~~~~~~~ 746 (1157)
T PRK11447 739 VASGITPT 746 (1157)
T ss_pred hhcCCCCC
Confidence 4566654
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.82 E-value=1.6e-14 Score=157.11 Aligned_cols=458 Identities=13% Similarity=0.075 Sum_probs=284.4
Q ss_pred hHHhcCChhhHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChh
Q 011378 4 ALCKDHKIDSAKMFLCEMEQKGVYPDTVT-YNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCD 82 (487)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 82 (487)
.+.+.|++++|...++...+.. .|+... ...........|+.++|.+.++.+.... +-+...+..+-..+.+.|+++
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHH
Confidence 4678899999999999987643 333221 1111222234589999999999987752 223455667777888899999
Q ss_pred hHHHHHHHHHHCCC------------------CCCH-HHHH----------------------------------HHHHH
Q 011378 83 RAKEVLDEMLQMGL------------------SPDT-ATYN----------------------------------TLLVE 109 (487)
Q Consensus 83 ~a~~~~~~m~~~g~------------------~~~~-~~~~----------------------------------~ll~~ 109 (487)
+|.+.++++.+..- .+.. ..+. ..-..
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 99999988754321 0000 0010 01123
Q ss_pred HHccCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-ChhhHHH------------
Q 011378 110 SCRKENMSEAEEIFCEMSRRGVAP-DIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVP-DNVLYTI------------ 175 (487)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~------------ 175 (487)
+...|++++|...|++..+. .| +...+..+-..+.+.|++++|...|++..+..... ....|..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 45678888888888887764 34 56677788888888999999999888877643221 1111211
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011378 176 IINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGN 255 (487)
Q Consensus 176 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~ 255 (487)
.-..+.+.|+.++|...+++..+.. +.+...+..+-..+...|++++|.+.|++..+.. +.+...+..+...|. .++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 1335667888899988888887653 2345566777888888899999999998887642 223344444444432 234
Q ss_pred HHHHHHHHHHHHHCCCC--------CCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCH
Q 011378 256 MNKALNLFDIMTQKSIK--------PDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISP-NYISYGILINGYCSMGHV 326 (487)
Q Consensus 256 ~~~a~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~ 326 (487)
.++|+.+++.+...... .....+..+...+...|++++|...+++.... .| +...+..+...|...|++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 44444444322111000 00112223334444455555555555544432 12 223334444455555555
Q ss_pred HHHHHHHHHHHhC----------------------------------CCCCChhh---------HHHHHHHHHhcCChHH
Q 011378 327 TEAFRLWYEMVGK----------------------------------GIKPTLVS---------CNTIIKGYCRSGDASK 363 (487)
Q Consensus 327 ~~a~~~~~~m~~~----------------------------------~~~~~~~~---------~~~li~~~~~~~~~~~ 363 (487)
++|...++..... ...++... +..+...+...|+.++
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 5555555544332 11111111 1123345566677777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 364 ADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMI 442 (487)
Q Consensus 364 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 442 (487)
|..+++. .+++...+..|-..+.+.|++++|.+.+++..+. .| +...+..+...+...|++++|...++...
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777661 2345556777888889999999999999988764 34 56788889999999999999999999876
Q ss_pred HcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011378 443 EKGLNPD-RSTYTTLINGHVSQNNLKEAFRFHDEMLQR 479 (487)
Q Consensus 443 ~~g~~p~-~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~ 479 (487)
+. .|+ ..++..+...+...|++++|.+++++.+..
T Consensus 665 ~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 665 AT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred cc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 43 443 456666778888999999999999998754
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=5.2e-16 Score=138.96 Aligned_cols=239 Identities=18% Similarity=0.267 Sum_probs=190.5
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 011378 28 PDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLL 107 (487)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 107 (487)
.+..||..+|.++|+....+.|.+++++-.+...+.+..+||.+|.+-+- ....+++.+|.+..+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHH
Confidence 36678999999999999999999999999888888899999999876443 22378999999999999999999999
Q ss_pred HHHHccCChhHH----HHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHH-HHHHHHHHHH----CCCCC----ChhhHH
Q 011378 108 VESCRKENMSEA----EEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDR-ALMYFREMKS----AGLVP----DNVLYT 174 (487)
Q Consensus 108 ~~~~~~~~~~~a----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~g~~~----~~~~~~ 174 (487)
.+.++.|+++.| .+++.+|++-|+.|...+|..+|..+.+.++..+ |..+..+... +-++| |...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 999999988765 5678899999999999999999999999888744 4444444432 22333 345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC----CcCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011378 175 IIINGYCRNGFVLEALKMRDEMLEKG----CVMDVV---TYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLI 247 (487)
Q Consensus 175 ~ll~~~~~~~~~~~a~~~~~~m~~~g----~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li 247 (487)
..+..|.+..+.+-|.++..-++... +.|+.. =|..+....|+....+.....|+.|.-+-..|+..+-.-++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 77888888888888888876655321 223322 35677788888888999999999998888889999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 011378 248 HGHCKDGNMNKALNLFDIMTQKS 270 (487)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~ 270 (487)
.+.-..++++-.-++|..+...|
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhh
Confidence 99888888888888888777654
No 15
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.75 E-value=8.1e-15 Score=142.35 Aligned_cols=222 Identities=24% Similarity=0.296 Sum_probs=152.2
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 011378 16 MFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMG 95 (487)
Q Consensus 16 ~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 95 (487)
.+|..++..|+.|+-+||.++|.-||..|+++.|- +|..|..+.++.+...++.++.++.+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 67889999999999999999999999999999999 9999999999889999999999999999887665
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHH-------HHCCC-----------------CCCHhHHHHHHHHHHhCCCH
Q 011378 96 LSPDTATYNTLLVESCRKENMSEAEEIFCEM-------SRRGV-----------------APDIVSFSTLIGIFSRNGQL 151 (487)
Q Consensus 96 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m-------~~~g~-----------------~p~~~~~~~li~~~~~~g~~ 151 (487)
.|...||+.|+.+|..+||+..-..+=+.| ...|+ -||.. +++....-.|.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglw 155 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLW 155 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHH
Confidence 588999999999999999977633222212 12232 23332 233333333444
Q ss_pred HHHHHHHHHH------------------------------HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011378 152 DRALMYFREM------------------------------KSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGC 201 (487)
Q Consensus 152 ~~a~~~~~~m------------------------------~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 201 (487)
+.+++++..+ ++.--.|++.+|..+++.-...|+++.|..++.+|.+.|+
T Consensus 156 aqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 4444333222 1111135666666666666666666666666666666666
Q ss_pred cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011378 202 VMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGN 255 (487)
Q Consensus 202 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~ 255 (487)
+.+.+-+..|+-+ .++...++.+...|.+.|+.|+..|+..-+..+.++|.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 6666655555544 55666666666666666666666666666666665443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.73 E-value=3e-12 Score=130.85 Aligned_cols=424 Identities=11% Similarity=0.025 Sum_probs=193.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 011378 33 YNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSP-DTATYNTLLVESC 111 (487)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~ 111 (487)
+...-..+.+.|+++.|...|+.... +.|+...|..+-.++.+.|++++|.+.++...+. .| +...|..+-.++.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 34455667777888888888877654 3566667777777788888888888888877654 34 3556777777778
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011378 112 RKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALK 191 (487)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 191 (487)
..|++++|..-|......+-..+. ....++....+......+...++ .. .++...+.. +..|...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~~l~---~~--~~~~~~~~~-~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLKKFAESKAKEILE---TK--PENLPSVTF-VGNYLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHHHHHHHHHh---cC--CCCCCCHHH-HHHHHHHccCCcchh
Confidence 888888887777655433211111 11111111111111111111111 10 011111111 111111000000000
Q ss_pred HHHHHHHcCCcCCh-hhHHHHHHH---HHhcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 192 MRDEMLEKGCVMDV-VTYNTILNG---LCRAKMLTEADDLFNEMLERG-VFP-DFYTFTTLIHGHCKDGNMNKALNLFDI 265 (487)
Q Consensus 192 ~~~~m~~~g~~~~~-~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~-~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~ 265 (487)
-++.- ....++. ..+..+-.. ....+.+++|.+.|++..+.+ ..| +...+..+-..+...|++++|+..|+.
T Consensus 279 ~~~~~--~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDS--NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhcc--cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00000 0000000 000000000 012244555555555555433 122 223444444555555555555555554
Q ss_pred HHHCCCCCC-eeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011378 266 MTQKSIKPD-IVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPT 344 (487)
Q Consensus 266 m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 344 (487)
..+. .|+ ...|..+-..+...|++++|...|....... +.+...|..+...+...|++++|...|+...... +.+
T Consensus 357 al~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~ 432 (615)
T TIGR00990 357 SIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDF 432 (615)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccC
Confidence 4432 232 2244444455555555555555555544321 1223445555555555555555555555554331 223
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH--------h
Q 011378 345 LVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDV--------I 416 (487)
Q Consensus 345 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--------~ 416 (487)
...+..+-..+.+.|+.++|...++...+.. +-+...++.+-..+...|++++|.+.+++..+. .|+. .
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~ 509 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHH
Confidence 3344444455555555555555555554321 112344555555555555555555555554332 1110 0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 417 TYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 417 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
.++.....+...|++++|..++++...... .+...+..+...+.+.|++++|++.+++..
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 111111222334555555555555443321 122345555555555566655555555543
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=3.6e-13 Score=137.34 Aligned_cols=329 Identities=11% Similarity=0.054 Sum_probs=223.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 011378 33 YNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPD-TATYNTLLVESC 111 (487)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~ 111 (487)
...++..+.+.|+++.|..+++......-.+ ...+..+..+....|+++.|...++++.+. .|+ ...+..+-..+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 4456677778888888888887776543222 233444555566688888888888887764 343 455666667777
Q ss_pred ccCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011378 112 RKENMSEAEEIFCEMSRRGVAP-DIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEAL 190 (487)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 190 (487)
..|++++|...+++..+. .| +...+..+...+...|++++|...++.+......+. ..+..+ ..+.+.|+.++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-DMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-HHHHHH-HHHHHcCCHHHHH
Confidence 888888888888887664 33 455667777888888888888888887755432222 222222 3467788888888
Q ss_pred HHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHH
Q 011378 191 KMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNK----ALNLFDIM 266 (487)
Q Consensus 191 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~----a~~~~~~m 266 (487)
..++.+.+..-.++...+..+...+.+.|++++|...+++..+.. +.+...+..+-..+...|+.++ |+..|+..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 888877665433344444555677778888888888888877653 3356667777788888888775 67777766
Q ss_pred HHCCCCC-CeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 011378 267 TQKSIKP-DIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTL 345 (487)
Q Consensus 267 ~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 345 (487)
.+. .| +...+..+-..+.+.|++++|...+++..... +.+...+..+..++...|++++|...++.+... .|+.
T Consensus 277 l~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~ 351 (656)
T PRK15174 277 LQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVT 351 (656)
T ss_pred Hhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc
Confidence 643 34 34567777888888888888888888776542 123445666777888888888888888877654 3443
Q ss_pred hh-HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011378 346 VS-CNTIIKGYCRSGDASKADEFLSKMVSE 374 (487)
Q Consensus 346 ~~-~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (487)
.. +..+..++...|+.++|...++...+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33 333455677888888888888877654
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=4.1e-13 Score=136.91 Aligned_cols=358 Identities=9% Similarity=0.036 Sum_probs=255.5
Q ss_pred HhcCChhHHHHHHHHHhhCC-CC-CCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhH
Q 011378 41 CREGFLEEAFQLMNSMSGKG-LK-PGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSE 118 (487)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~-~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 118 (487)
.+..+++.---.|..-.++. -. -+..-..-++..+.+.|+++.|..++.......-.+ ...+..+..+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence 45566665554554433321 11 123345567778889999999999999877654332 3344455566677999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 119 AEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD-NVLYTIIINGYCRNGFVLEALKMRDEML 197 (487)
Q Consensus 119 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 197 (487)
|.+.++++.+.. +-+...+..+...+.+.|++++|...+++.... .|+ ...+..+...+...|+.++|...++.+.
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999987652 224556777888889999999999999988764 444 5577888888999999999999888776
Q ss_pred HcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeee
Q 011378 198 EKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVT 277 (487)
Q Consensus 198 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 277 (487)
...-. +...+..+ ..+.+.|++++|...++.+.+..-.++...+..+..++...|+.++|+..++...+.. +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 54322 22233233 3477889999999999988765433444555666778888999999999998877653 224556
Q ss_pred hHHHHHHHHccCCHHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011378 278 YNTLIDGFCKVGEMEK----ANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIK 353 (487)
Q Consensus 278 ~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 353 (487)
+..+-..+...|++++ |...|+...... +.+...+..+...+...|++++|...++...... +.+...+..+-.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 7778888888998885 788888776542 2355678888888899999999999998877643 233456667778
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHhccCCHHHHHHHHHHHHhC
Q 011378 354 GYCRSGDASKADEFLSKMVSEGVDPDSIS-YNTLINGFVREENMDKAFALVSKMENQ 409 (487)
Q Consensus 354 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~ 409 (487)
+|.+.|+.++|...++.+... .|+... +..+..++...|+.++|...+++..+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888899999999999888764 355433 333456778889999999998887653
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=2.3e-12 Score=134.32 Aligned_cols=402 Identities=9% Similarity=0.014 Sum_probs=237.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011378 29 DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLV 108 (487)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 108 (487)
+..-....+......|+.++|.++|....... +.+...+..+-..+.+.|++++|.+++++..+.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44455667777788889999988888876521 2334457778888888889999998888876542 233555667777
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHH
Q 011378 109 ESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD-NVLYTIIINGYCRNGFVL 187 (487)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~ 187 (487)
.+...|+.++|...+++..+. -+.+.. +..+..++.+.|+.++|+..+++..+. .|+ ...+..+..++.+.+..+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChH
Confidence 788888899999888888765 222444 777777888888899998888888764 343 334455666777778888
Q ss_pred HHHHHHHHHHHcCCcCCh------hhHHHHHHHHHhc-----CCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHH
Q 011378 188 EALKMRDEMLEKGCVMDV------VTYNTILNGLCRA-----KML---TEADDLFNEMLER-GVFPDFY-TF----TTLI 247 (487)
Q Consensus 188 ~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~-----~~~---~~a~~~~~~m~~~-~~~~~~~-t~----~~li 247 (487)
+|++.++.... .|+. .....++...... +.+ +.|.+.++.+.+. ...|+.. .+ ...+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 88877765443 2221 0111222222111 123 4566666666543 1222221 11 1112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhc
Q 011378 248 HGHCKDGNMNKALNLFDIMTQKSIK-PDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISP---NYISYGILINGYCSM 323 (487)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~t~~~li~~~~~~ 323 (487)
.++...|+.++|+..|+.+.+.+-. |+. .-..+...|...|++++|...|+......... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3345567777777777776655421 221 11124556677777777777777665432111 123345555566777
Q ss_pred CCHHHHHHHHHHHHhCC-----------CCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 011378 324 GHVTEAFRLWYEMVGKG-----------IKPT---LVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLING 389 (487)
Q Consensus 324 ~~~~~a~~~~~~m~~~~-----------~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 389 (487)
|++++|..+++.+.... -.|+ ...+..+...+...|+.++|.++++++... .+-+...+..+...
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 77777777777665431 0122 123344555566666677776666666543 12234456666666
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 390 FVREENMDKAFALVSKMENQGLVPD-VITYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 390 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
+...|+.++|++.+++..+. .|| ...+-.....+.+.|++++|+.+++++.+
T Consensus 403 ~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666666655542 354 33444444456666666666666666654
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=2.6e-12 Score=133.87 Aligned_cols=390 Identities=12% Similarity=-0.007 Sum_probs=173.7
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CccchHHHHHHHHhcCChhh
Q 011378 5 LCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKP-GVFTYNSLINGLCKKGRCDR 83 (487)
Q Consensus 5 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~ 83 (487)
..-.|+.+.|..++.+..... ..+...+..+...+.+.|++++|.++|+...+. .| +...+..+...+.+.|++++
T Consensus 25 a~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 25 ALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 344555555555555554311 122334555555555555666665555554432 12 23334444455555556666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 011378 84 AKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAP-DIVSFSTLIGIFSRNGQLDRALMYFREMK 162 (487)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 162 (487)
|...+++..+.. +.+.. +..+-..+...|+.++|...+++..+. .| +...+..+...+.+.|..+.|++.++...
T Consensus 102 A~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 102 ALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 655555554431 12223 444545555555566666555555543 22 22333344444555555555555554433
Q ss_pred HCCCCCCh------hhHHHHHHHHHhc-----CCH---HHHHHHHHHHHHc-CCcCChh-hHH----HHHHHHHhcCCHH
Q 011378 163 SAGLVPDN------VLYTIIINGYCRN-----GFV---LEALKMRDEMLEK-GCVMDVV-TYN----TILNGLCRAKMLT 222 (487)
Q Consensus 163 ~~g~~~~~------~~~~~ll~~~~~~-----~~~---~~a~~~~~~m~~~-g~~~~~~-~~~----~li~~~~~~~~~~ 222 (487)
. .|+. .....++...... +.. ++|+..++.+.+. .-.|+.. .+. ..+..+...|+++
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 2 2221 0111111111111 111 3444455554432 1112111 110 0022233445555
Q ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CeeehHHHHHHHHccCCHHHHHHHH
Q 011378 223 EADDLFNEMLERGVF-PDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKP---DIVTYNTLIDGFCKVGEMEKANKLW 298 (487)
Q Consensus 223 ~a~~~~~~m~~~~~~-~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~ 298 (487)
+|...|+.+.+.+-. |+. .-..+..+|...|++++|+..|+.+.+..-.. .......|..++...|++++|..++
T Consensus 255 eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 565555555544321 211 11113445555555666655555544321100 0122333444555555566665555
Q ss_pred HHHHhCC-----------CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 011378 299 ADMISRK-----------ISPN---YISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKA 364 (487)
Q Consensus 299 ~~m~~~~-----------~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 364 (487)
..+.... ..|+ ...+..+...+...|++++|..+++++... .+-+...+..+...+...|+.++|
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHH
Confidence 5554321 0112 112334444555555566666555555433 133344455555555555556666
Q ss_pred HHHHHHHHHCCCCCC-hhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 365 DEFLSKMVSEGVDPD-SISYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 365 ~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
.+.+++.... .|| ...+-.+...+...+++++|+.+++++.+
T Consensus 413 ~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 413 ENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555442 233 23334444455555556666555555544
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.70 E-value=5.6e-12 Score=128.87 Aligned_cols=421 Identities=14% Similarity=0.036 Sum_probs=279.8
Q ss_pred hHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CccchHHHHHHHHhcCChh
Q 011378 4 ALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKP-GVFTYNSLINGLCKKGRCD 82 (487)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~ 82 (487)
.+.+.|+++.|...+++..+. .|+...|..+-.++.+.|++++|++.++...+. .| +...|..+-.++...|+++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHH
Confidence 567789999999999988764 588888999999999999999999999987764 34 3457888888999999999
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 011378 83 RAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMK 162 (487)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 162 (487)
+|..-|......+-..+. ....++..... ..+........+.. .++...+.. +..+...........-+..-.
T Consensus 212 eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTF-VGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHH-HHHHHHHccCCcchhhhhccc
Confidence 999988766543211111 11122221111 11222222222211 111112222 222222211111111111111
Q ss_pred HCCCCCChh-hHHHHHHH---HHhcCCHHHHHHHHHHHHHcC-CcC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011378 163 SAGLVPDNV-LYTIIING---YCRNGFVLEALKMRDEMLEKG-CVM-DVVTYNTILNGLCRAKMLTEADDLFNEMLERGV 236 (487)
Q Consensus 163 ~~g~~~~~~-~~~~ll~~---~~~~~~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 236 (487)
...++.. .+..+-.. ....+..++|.+.++...+.+ ..| +...|+.+...+...|++++|...|++..+.
T Consensus 285 --~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-- 360 (615)
T TIGR00990 285 --ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-- 360 (615)
T ss_pred --ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 1111110 11111100 123467888999998888765 223 3456777778888899999999999988764
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011378 237 FPD-FYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGI 315 (487)
Q Consensus 237 ~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ 315 (487)
.|+ ...|..+...+...|++++|+..|+...+.. +.+..+|..+-..+...|++++|...|.+..... +.+...+..
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~ 438 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ 438 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence 344 5678888888899999999999998876542 2245678888888999999999999998876542 224566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C---Ch-hhHHHHHHH
Q 011378 316 LINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVD--P---DS-ISYNTLING 389 (487)
Q Consensus 316 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p---~~-~~~~~li~~ 389 (487)
+...+.+.|++++|...++...+. .+.+...++.+-..+...|++++|...++......-. + +. ..++.....
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 888888999999999999987754 2345677888888999999999999999987764311 1 11 112222233
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011378 390 FVREENMDKAFALVSKMENQGLVPDV-ITYNVILTGFCRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 390 ~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 444 (487)
+...|++++|.+++++.... .|+. ..+..+...+.+.|++++|...|++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44468999999999886553 3543 46888899999999999999999987654
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.69 E-value=1.6e-11 Score=126.00 Aligned_cols=191 Identities=10% Similarity=0.049 Sum_probs=90.7
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHh
Q 011378 283 DGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKG-----IKPTLVSCNTIIKGYCR 357 (487)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~ 357 (487)
-++.+.|+..++.+.++.+...+.+.....-..+.++|...++.++|+.++..+.... ..++......|.-+|..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 3444455555555555555555543222244455555555555555555555554321 11222223455555555
Q ss_pred cCChHHHHHHHHHHHHCCC-----------CC--Chh-hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011378 358 SGDASKADEFLSKMVSEGV-----------DP--DSI-SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILT 423 (487)
Q Consensus 358 ~~~~~~a~~~~~~m~~~g~-----------~p--~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (487)
++++++|..+++.+.+.-- .| |-. .+..++..++..|++.+|++.++++.... .-|......+.+
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~ 458 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALAS 458 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 5555555555555554100 01 111 12333444455555555555555554321 224455555555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 424 GFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLINGHVSQNNLKEAFRFHDEM 476 (487)
Q Consensus 424 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~l~~~~~~~~~~~~a~~~~~~m 476 (487)
.+..+|.+.+|+..++..... .|+ ..+......++...+++++|..+...+
T Consensus 459 v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 459 IYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 555555555555555443222 332 233334444555555555555555444
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.68 E-value=2.3e-11 Score=124.89 Aligned_cols=436 Identities=13% Similarity=0.106 Sum_probs=308.6
Q ss_pred hHHhcCChhhHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHH---HHHHHhcC
Q 011378 4 ALCKDHKIDSAKMFLCEMEQKGVYPDTV-TYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSL---INGLCKKG 79 (487)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l---i~~~~~~~ 79 (487)
...+.|+++.|...|.+..+.. |+.. ....++..+...|+.++|...++... .|+...+..+ ...+...|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcC
Confidence 3578999999999999987654 5532 22388888899999999999999877 3444444333 34667789
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHH
Q 011378 80 RCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFR 159 (487)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 159 (487)
+++.|.++++++.+.. +-+...+..+...+...++.++|++.++.+... .|+...+-.++..+...++..+|++.++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999999998753 223566667788889999999999999998765 4565556445555555666666999999
Q ss_pred HHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhH------HHHHHHH-----HhcCCHHHHHHH
Q 011378 160 EMKSAGLVP-DNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTY------NTILNGL-----CRAKMLTEADDL 227 (487)
Q Consensus 160 ~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~------~~li~~~-----~~~~~~~~a~~~ 227 (487)
++.... | +...+..+..++.+.|-...|.++..+-.. -+.+...-+ ...+..- .....+..+.+.
T Consensus 194 kll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~-~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 194 EAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPN-LVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc-ccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 998753 5 456778888899999988888876554210 011111000 0111110 012233444444
Q ss_pred HHHH---HHc-CCCCCH-H----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHH
Q 011378 228 FNEM---LER-GVFPDF-Y----TFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLW 298 (487)
Q Consensus 228 ~~~m---~~~-~~~~~~-~----t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 298 (487)
+..+ ... +-.|.. . ...-.+-++...|+.+++++.|+.+...+.+....+-.++.++|...+++++|..++
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4443 321 222321 1 223456678889999999999999998887655567889999999999999999999
Q ss_pred HHHHhCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCCh---hhHHHHHHHHHhcC
Q 011378 299 ADMISRK-----ISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGI-----------KPTL---VSCNTIIKGYCRSG 359 (487)
Q Consensus 299 ~~m~~~~-----~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----------~~~~---~~~~~li~~~~~~~ 359 (487)
+...... ..++......|.-++...+++++|..+.+.+.+.-- .||. ..+..+...+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 9986543 233444467899999999999999999999987310 1222 23445677788999
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChHHHHHHH
Q 011378 360 DASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPD-VITYNVILTGFCRQGRMHDSELIL 438 (487)
Q Consensus 360 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~ 438 (487)
+..+|++.++++... -+-|......+-+.+...|+..+|++.++..... .|+ ..+.-.....+-..|++.+|..+.
T Consensus 431 dl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 431 DLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999653 3446778889999999999999999999766543 565 455667777888899999999999
Q ss_pred HHHHHcCCCCCHHHHHHH
Q 011378 439 WRMIEKGLNPDRSTYTTL 456 (487)
Q Consensus 439 ~~m~~~g~~p~~~ty~~l 456 (487)
+.+.+. .|+......|
T Consensus 508 ~~l~~~--~Pe~~~~~~l 523 (822)
T PRK14574 508 DDVISR--SPEDIPSQEL 523 (822)
T ss_pred HHHHhh--CCCchhHHHH
Confidence 888653 4555444443
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=3.1e-11 Score=126.39 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=42.1
Q ss_pred cCChhhHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHH
Q 011378 8 DHKIDSAKMFLCEMEQKGVYP-DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKE 86 (487)
Q Consensus 8 ~~~~~~a~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 86 (487)
.|+++.|...|....+.. | +..++..+...|.+.|+.++|...+++..+. .|+-..|..++..+ +++++|..
T Consensus 57 ~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 366666666666654432 3 3345556666666666666666666655443 33333333333222 55556666
Q ss_pred HHHHHHH
Q 011378 87 VLDEMLQ 93 (487)
Q Consensus 87 ~~~~m~~ 93 (487)
+++++..
T Consensus 130 ~ye~l~~ 136 (987)
T PRK09782 130 TVEELLA 136 (987)
T ss_pred HHHHHHH
Confidence 6666554
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.67 E-value=6.6e-11 Score=124.02 Aligned_cols=227 Identities=12% Similarity=0.060 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011378 240 FYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILING 319 (487)
Q Consensus 240 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 319 (487)
...|..+-..+.. ++.++|+..+...... .|+......+...+...|++++|...|+.+... .|+...+..+..+
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~a 551 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANT 551 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHH
Confidence 3444444444444 5666666655544433 244322222233345677777777777765433 3444445556666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHH
Q 011378 320 YCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKA 399 (487)
Q Consensus 320 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 399 (487)
+...|++++|...++...+.. +.+...+..+.....+.|+.++|...+++..+. .|+...+..+-..+.+.|+.++|
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 777778887777777776543 222222323333444557888888888777643 36666777777778888888888
Q ss_pred HHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 400 FALVSKMENQGLVPD-VITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 400 ~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
...+++.... .|+ ...++.+-..+...|+.++|...+++..+. .| +...+..+-.++...|++++|...+++-.
T Consensus 629 ~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 629 VSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888776653 454 445566666777888888888887776653 34 34567777778888888888888877766
Q ss_pred H
Q 011378 478 Q 478 (487)
Q Consensus 478 ~ 478 (487)
+
T Consensus 705 ~ 705 (987)
T PRK09782 705 D 705 (987)
T ss_pred h
Confidence 3
No 26
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.60 E-value=3e-12 Score=124.83 Aligned_cols=223 Identities=19% Similarity=0.230 Sum_probs=142.9
Q ss_pred HHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 011378 51 QLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRG 130 (487)
Q Consensus 51 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 130 (487)
.++..+...|+.||..||.++|.-|+..|+.+.|- +|.-|+-..+..+...|+.++.++...++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46677888999999999999999999999999999 9999988888888899999999999999888877
Q ss_pred CCCCHhHHHHHHHHHHhCCCHHHHHHHHHH-HHH-------CC-----------------CCCChh----------hHHH
Q 011378 131 VAPDIVSFSTLIGIFSRNGQLDRALMYFRE-MKS-------AG-----------------LVPDNV----------LYTI 175 (487)
Q Consensus 131 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~-------~g-----------------~~~~~~----------~~~~ 175 (487)
.|...||+.|..+|.+.|++.. ++..++ |.+ .| .-||.. .|..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 7888999999999999999875 222222 321 11 122221 1222
Q ss_pred HHHHHHhcCC------HH-----------HHHHHHHHHHHcCC-cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011378 176 IINGYCRNGF------VL-----------EALKMRDEMLEKGC-VMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVF 237 (487)
Q Consensus 176 ll~~~~~~~~------~~-----------~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 237 (487)
+++.+.+..- .. ...+ +..|.+.+. .|++.+|+.++.+-...|+.+.|..+..+|+++|++
T Consensus 158 llkll~~~Pvsa~~~p~~vfLrqnv~~ntpvek-Ll~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEK-LLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHhhCCcccccchHHHHHHHhccCCchHHH-HHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 2222211110 00 0000 111122222 255666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCC
Q 011378 238 PDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGE 290 (487)
Q Consensus 238 ~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 290 (487)
.+.+-|-.++-+ .++...+..+++.|...|+.|+..|+.--+-.+.++|.
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 555555555444 55555566666666666666666666555555555443
No 27
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.59 E-value=3.1e-11 Score=113.61 Aligned_cols=365 Identities=16% Similarity=0.246 Sum_probs=257.4
Q ss_pred ccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHH-HH
Q 011378 65 VFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSP-DTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFST-LI 142 (487)
Q Consensus 65 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-li 142 (487)
..+|..+-..+-..|+++.|+..+..+.+. .| ....|..+-.++...|+.+.|.+.|.+..+ +.|+.....+ +-
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchh
Confidence 356666777777777777788777777764 34 355677777777777777777777776654 3455443333 33
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCC-hhhHHHHHHHHHhcCC
Q 011378 143 GIFSRNGQLDRALMYFREMKSAGLVPD-NVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMD-VVTYNTILNGLCRAKM 220 (487)
Q Consensus 143 ~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~ 220 (487)
+.....|++.+|...+.+..+. .|. ...|+.|--.+-..|++..|..-|++..+. .|+ ...|-.|-..|...+.
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 3334467777777666655442 343 345777777777778888888777776542 222 2356667777777777
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCe-eehHHHHHHHHccCCHHHHHHHH
Q 011378 221 LTEADDLFNEMLERGVFPD-FYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDI-VTYNTLIDGFCKVGEMEKANKLW 298 (487)
Q Consensus 221 ~~~a~~~~~~m~~~~~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~ 298 (487)
++.|...+...... .|+ ...+..|-..|-..|.+|.|++.|+...+. .|+- ..|+.|-.++...|++.+|.+.+
T Consensus 268 ~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 268 FDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred chHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 77777777766542 343 456677777788888888888888876543 4543 47888999999999999999988
Q ss_pred HHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011378 299 ADMISRKISPN-YISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTL-VSCNTIIKGYCRSGDASKADEFLSKMVSEGV 376 (487)
Q Consensus 299 ~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 376 (487)
...... .|+ ....+.|-..|...|.+++|..+|..-. .+.|.. ..+|.|-..|-..|++++|...+++.++ |
T Consensus 344 nkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al--~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I 417 (966)
T KOG4626|consen 344 NKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKAL--EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--I 417 (966)
T ss_pred HHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHH--hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--c
Confidence 876543 333 3567788888989999999988887653 344543 4578888889999999999999988774 6
Q ss_pred CCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011378 377 DPDS-ISYNTLINGFVREENMDKAFALVSKMENQGLVPDV-ITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRS 451 (487)
Q Consensus 377 ~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 451 (487)
+|+- ..|+.+-..|-..|+++.|...+.+-.. +.|.. ..++.|.+.|-..|++.+|..-+++.+. ++||.+
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfp 490 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFP 490 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCc
Confidence 7774 3788888888888999999888876654 34543 4678888899999999999888888654 567654
No 28
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.57 E-value=4.4e-11 Score=112.64 Aligned_cols=374 Identities=21% Similarity=0.280 Sum_probs=294.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-ccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011378 30 TVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPG-VFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLV 108 (487)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 108 (487)
..+|+.+-+.+-..|++++|+.+++.+.+. .|+ ...|..+-.++...|+.+.|...|.+..+ +.|+.....+-+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchh
Confidence 468999999999999999999999999874 453 46799999999999999999999988776 3576665544443
Q ss_pred HHH-ccCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCC
Q 011378 109 ESC-RKENMSEAEEIFCEMSRRGVAPD-IVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD-NVLYTIIINGYCRNGF 185 (487)
Q Consensus 109 ~~~-~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~ 185 (487)
-+. ..|++++|..-+.+..+. .|. .+.|+.|-..+-..|++..|++.|++... +.|+ ...|-.|-+.|...+.
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhc
Confidence 333 358888998888776653 333 35788899999999999999999998876 4565 3467777777777777
Q ss_pred HHHHHHHHHHHHHcCCcC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 011378 186 VLEALKMRDEMLEKGCVM-DVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPD-FYTFTTLIHGHCKDGNMNKALNLF 263 (487)
Q Consensus 186 ~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~t~~~li~~~~~~g~~~~a~~~~ 263 (487)
++.|...+..... ..| ....+..+-..|...|.++.|.+.+++..+. .|+ +..|+.|-+++-..|++.+|++.|
T Consensus 268 ~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 268 FDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred chHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 8888777665443 334 3456777888899999999999999998864 465 458999999999999999999999
Q ss_pred HHHHHCCCCCC-eeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011378 264 DIMTQKSIKPD-IVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNY-ISYGILINGYCSMGHVTEAFRLWYEMVGKGI 341 (487)
Q Consensus 264 ~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 341 (487)
.....- .|+ ....+.|-..|...|.+++|.++|.... .+.|.. ..+|.|-..|-..|.+++|..-+++.. .+
T Consensus 344 nkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al--~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI 417 (966)
T KOG4626|consen 344 NKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKAL--EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL--RI 417 (966)
T ss_pred HHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHH--hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH--hc
Confidence 876643 333 3467889999999999999999998754 344543 568999999999999999999999875 46
Q ss_pred CCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH-hhH
Q 011378 342 KPTL-VSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDS-ISYNTLINGFVREENMDKAFALVSKMENQGLVPDV-ITY 418 (487)
Q Consensus 342 ~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~ 418 (487)
.|+. ..|+.+=..|...|+.+.|.+.+...+. +.|.- ..++.|-+.|-..|++.+|+.-+++-.+ ++||. ..|
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~ 493 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAY 493 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhh
Confidence 7765 4788888899999999999999988775 44653 4789999999999999999998887654 67875 346
Q ss_pred HHHHHHH
Q 011378 419 NVILTGF 425 (487)
Q Consensus 419 ~~li~~~ 425 (487)
..++...
T Consensus 494 cNllh~l 500 (966)
T KOG4626|consen 494 CNLLHCL 500 (966)
T ss_pred hHHHHHH
Confidence 5665544
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.49 E-value=2.9e-08 Score=98.10 Aligned_cols=468 Identities=15% Similarity=0.164 Sum_probs=318.1
Q ss_pred hHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CccchHHHHHHHHhcCChh
Q 011378 4 ALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKP-GVFTYNSLINGLCKKGRCD 82 (487)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~ 82 (487)
.+++ |+++.|..++.++.+..- .....|-+|-..|-+.|+.+.+...+- ....+.| |..-|..+-.-..+.|.++
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~l--lAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWL--LAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHH--HHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 3455 999999999999987652 366789999999999999999987763 3333444 4567888888888999999
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHH----HHHHHHHhCCCHHHHHHHH
Q 011378 83 RAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFS----TLIGIFSRNGQLDRALMYF 158 (487)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~~a~~~~ 158 (487)
.|.-.|.+..+.. +++...+-.-...|-+.|+...|..-|.++.+.--+.|..-+- .++..|...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999988754 3455555555667888999999999999998764322333233 3456677778889999888
Q ss_pred HHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CcCChhhHHH
Q 011378 159 REMKSAG-LVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKG---------------------------CVMDVVTYNT 210 (487)
Q Consensus 159 ~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g---------------------------~~~~~~~~~~ 210 (487)
+.....+ -..+...++++...|.+....+.+......+.... ..++... --
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IR 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-Hh
Confidence 8876632 23445578888888888888888887776665522 2222222 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHcc
Q 011378 211 ILNGLCRAKMLTEADDLFNEMLERGVFP--DFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKV 288 (487)
Q Consensus 211 li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 288 (487)
++-++......+...-+.....+.++.| +...|.-+..+|...|++++|+.+|..+...-.--+...|-.+-.+|-..
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 3344445556666666677777777554 45678889999999999999999999988765555677899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHH--------hCCCCCChhhHHHHHHHHHhcC
Q 011378 289 GEMEKANKLWADMISRKISPNY-ISYGILINGYCSMGHVTEAFRLWYEMV--------GKGIKPTLVSCNTIIKGYCRSG 359 (487)
Q Consensus 289 g~~~~a~~~~~~m~~~~~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~~ 359 (487)
|..+.|.+.+...... .|+. ..--.|-..+...|+.++|.+.+..+. ..++.|+....--..+.+...|
T Consensus 463 ~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred hhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 9999999999887643 3432 222345566778899999999998854 3345566655555566677778
Q ss_pred ChHHHHHHHHHHHHCC-----C-----------------CCChhhHHHHHHHHhccCCHHHHHHHHH------HHHhCCC
Q 011378 360 DASKADEFLSKMVSEG-----V-----------------DPDSISYNTLINGFVREENMDKAFALVS------KMENQGL 411 (487)
Q Consensus 360 ~~~~a~~~~~~m~~~g-----~-----------------~p~~~~~~~li~~~~~~~~~~~a~~~~~------~m~~~g~ 411 (487)
+.++=......|...+ + +....+-...+.+-.+.++.....+-+. --...|+
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 7666433333333211 1 1112223333444444444322222111 1111233
Q ss_pred CCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHH---HH-HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011378 412 VPDV--ITYNVILTGFCRQGRMHDSELILWRMIEKGLN-PDRS---TY-TTLINGHVSQNNLKEAFRFHDEMLQR 479 (487)
Q Consensus 412 ~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~---ty-~~l~~~~~~~~~~~~a~~~~~~m~~~ 479 (487)
.-|. ..+.-+|...++.+++++|..++..+.+..+- -+.. +. ..++.+....+++..|+.+++.|...
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3222 23456677889999999999999988765432 2222 33 34467778889999999999999754
No 30
>PF13041 PPR_2: PPR repeat family
Probab=99.44 E-value=2.9e-13 Score=87.82 Aligned_cols=48 Identities=40% Similarity=0.908 Sum_probs=21.3
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011378 413 PDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGH 460 (487)
Q Consensus 413 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~ 460 (487)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.|+++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444
No 31
>PF13041 PPR_2: PPR repeat family
Probab=99.43 E-value=4.1e-13 Score=87.11 Aligned_cols=50 Identities=38% Similarity=0.935 Sum_probs=48.9
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 011378 378 PDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCR 427 (487)
Q Consensus 378 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 427 (487)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.42 E-value=1.7e-09 Score=104.21 Aligned_cols=250 Identities=11% Similarity=0.081 Sum_probs=134.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHH
Q 011378 216 CRAKMLTEADDLFNEMLERGVFPDFYTFT--TLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEK 293 (487)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~~~~~t~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 293 (487)
.+.|+++.+.+.+.++.+. .|+..... .....+...|+.+.|...++.+.+.. +-+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4445555555555554432 22221111 11334444555555555555444332 1123344445555555555555
Q ss_pred HHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 011378 294 ANKLWADMISRKISPNY-------ISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADE 366 (487)
Q Consensus 294 a~~~~~~m~~~~~~p~~-------~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 366 (487)
|.+++..+.+.+..++. ..|..++.......+.+...++|+.+.+. .+.+......+...+...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555544333211 12222333333334445555555554322 24455566667777777777777777
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011378 367 FLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPD-VITYNVILTGFCRQGRMHDSELILWRMIEKG 445 (487)
Q Consensus 367 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 445 (487)
++++..+. .||.. -.++.+.+..++.+++.+..+.+.+. .|+ ...+..+-..|.++|++++|...|+...+
T Consensus 285 ~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~-- 356 (398)
T PRK10747 285 IILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK-- 356 (398)
T ss_pred HHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 77766653 33331 12334444557777777777776654 343 34455666677777777777777777665
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 446 LNPDRSTYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 446 ~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
..|+..+|-.+-..+.+.|+.++|..++++=+
T Consensus 357 ~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 357 QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35777777777777777777777777766543
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=3.3e-09 Score=102.18 Aligned_cols=251 Identities=10% Similarity=0.058 Sum_probs=160.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCcCChhhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011378 181 CRNGFVLEALKMRDEMLEKGCVMDVVTYN--TILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNK 258 (487)
Q Consensus 181 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~ 258 (487)
.+.|+.+.+.+.+.++.+. .|+...+- .....+...|+++.|...++++.+.. +-++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555555432 23322221 22345556666666666666665543 2245556666666666666666
Q ss_pred HHHHHHHHHHCCCCCCe-------eehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011378 259 ALNLFDIMTQKSIKPDI-------VTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFR 331 (487)
Q Consensus 259 a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~ 331 (487)
|.+++..+.+.+..++. ..|..++.......+.+...++|+...+. .+.+......+..++...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666655443211 12333344444444566666666655322 23466677788888888899999888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 011378 332 LWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGL 411 (487)
Q Consensus 332 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 411 (487)
++++..+. +|+... .++.+....++.+++....+...+.. +-|...+.++-..|.+.+++++|.+.|+...+.
T Consensus 285 ~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 285 IILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred HHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 88887763 444422 23445556688888888888877532 224456777788888999999999999888764
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 412 VPDVITYNVILTGFCRQGRMHDSELILWRMI 442 (487)
Q Consensus 412 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 442 (487)
.|+..+|-.+...+.+.|+.++|..++++-.
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6888888888899999999999988888754
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.37 E-value=1.4e-07 Score=94.21 Aligned_cols=456 Identities=14% Similarity=0.113 Sum_probs=246.9
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCC---hhHHHHHHHHH-hhCCCCCCccchHHHHHHHHhcC
Q 011378 5 LCKDHKIDSAKMFLCEMEQKGVYPDTV-TYNTLINAYCREGF---LEEAFQLMNSM-SGKGLKPGVFTYNSLINGLCKKG 79 (487)
Q Consensus 5 ~~~~~~~~~a~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~~~---~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~~ 79 (487)
+.+.++.+.|+..|.+..+.. |+.+ ++-.|--.-....+ +..++.++... ...+ -|+...+.|-+.+.-.|
T Consensus 209 f~kl~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 209 FWKLGMSEKALLAFERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKK 284 (1018)
T ss_pred HHhccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcc
Confidence 346677777777777766532 3221 11111111111222 33444444333 2222 34556777788888889
Q ss_pred ChhhHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHhCCCHHHHH
Q 011378 80 RCDRAKEVLDEMLQMGLS--PDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVS--FSTLIGIFSRNGQLDRAL 155 (487)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~ 155 (487)
++..++.+.+.+...-.. .-+..|--+-++|-..|++++|...+.+-.+. .|+..+ +-.|...+.+.|+++.+.
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~ 362 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESK 362 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHH
Confidence 999999888887754321 11334566777888889999999888776543 333333 334778888999999998
Q ss_pred HHHHHHHHCCCCCCh-hhHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 156 MYFREMKSAGLVPDN-VLYTIIINGYCRNG----FVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNE 230 (487)
Q Consensus 156 ~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 230 (487)
..|+..-.. .||. .+-.+|-..|+..+ ..+.|..++.+-.+.- +.|...|-.+-..+-. ++...+...+..
T Consensus 363 ~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~ 438 (1018)
T KOG2002|consen 363 FCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGN 438 (1018)
T ss_pred HHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHH
Confidence 888887653 3543 34444444555443 2344444444333322 2344455444444433 333333444443
Q ss_pred ----HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCee------ehHHHHHHHHccCCHHHHHHH
Q 011378 231 ----MLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQK---SIKPDIV------TYNTLIDGFCKVGEMEKANKL 297 (487)
Q Consensus 231 ----m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~------~~~~li~~~~~~g~~~~a~~~ 297 (487)
+...+-.+.+...|++-..+...|++.+|...|+..... ...+|.. +--.+-..+-..++.+.|.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 445555677888888888888888888888888766544 2223331 112233334445577777787
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHhC-------------------CCC---------------
Q 011378 298 WADMISRKISPNYISYGILINGYC-SMGHVTEAFRLWYEMVGK-------------------GIK--------------- 342 (487)
Q Consensus 298 ~~~m~~~~~~p~~~t~~~li~~~~-~~~~~~~a~~~~~~m~~~-------------------~~~--------------- 342 (487)
+..+.+. .|+.+..-.=+-+.+ ..+...+|...+++.... .+.
T Consensus 519 Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 519 YKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST 596 (1018)
T ss_pred HHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence 7777654 244333211111111 123444555544443211 111
Q ss_pred -CChhhHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 011378 343 -PTLVSCNTIIKGYCR------------SGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQ 409 (487)
Q Consensus 343 -~~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 409 (487)
+|.++.-+|=..|.. .+..++|.++|.+..+.. +-|...-|.+--.++..|+++.|..+|....+.
T Consensus 597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA 675 (1018)
T ss_pred CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence 233332222222221 122345555555554321 224445555555566667777777777766655
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011378 410 GLVPDVITYNVILTGFCRQGRMHDSELILWRMIE-KGLNPDRSTYTTLINGHVSQNNLKEAFRFHD 474 (487)
Q Consensus 410 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~ 474 (487)
.- -+..+|-.|.+.|..+|++..|.+.|+.... .+-.-+......|-+++.+.|.+.+|.+.+.
T Consensus 676 ~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 676 TS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred Hh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 32 1333566666677777777777777666443 3333445556666667777777777666543
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.35 E-value=8e-12 Score=114.76 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHH
Q 011378 312 SYGILINGYCSMGHVTEAFRLWYEMVGK-GIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD-SISYNTLING 389 (487)
Q Consensus 312 t~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~ 389 (487)
.+..++..+...++++++..+++..... ..+++...|..+-..+.+.|+.++|.+.+++..+. .|+ ....+.++..
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWL 189 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence 3334444444444444444444443321 12233444444444444455555555555444432 232 3344444445
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 011378 390 FVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQNNLKE 468 (487)
Q Consensus 390 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~l~~~~~~~~~~~~ 468 (487)
+...|+.+++.++++...+.. ..|...+..+..++...|+.++|...+++.... .| |+.....+.+.+...|+.++
T Consensus 190 li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT-------
T ss_pred HHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccc
Confidence 555555555444444444321 223334444445555555555555555554331 22 33444444455555555555
Q ss_pred HHHHHHH
Q 011378 469 AFRFHDE 475 (487)
Q Consensus 469 a~~~~~~ 475 (487)
|.++.++
T Consensus 267 A~~~~~~ 273 (280)
T PF13429_consen 267 ALRLRRQ 273 (280)
T ss_dssp -------
T ss_pred ccccccc
Confidence 5554433
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.35 E-value=1.5e-11 Score=113.05 Aligned_cols=259 Identities=17% Similarity=0.161 Sum_probs=85.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCc-cchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 011378 35 TLINAYCREGFLEEAFQLMNSMSGKGLKPGV-FTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRK 113 (487)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 113 (487)
.+-..+.+.|++++|++++..-....-+|+. .-|..+-......++++.|.+.++++.+.+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4456666777777777777543333212333 33333333444566777777777777655432 34445555555 567
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011378 114 ENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAG-LVPDNVLYTIIINGYCRNGFVLEALKM 192 (487)
Q Consensus 114 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~ 192 (487)
+++++|.+++....+.. ++...+...+..+.+.++++.+.++++...... ..++...|..+-..+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777766554432 344556666777777777777777777765422 334556666677777777777777777
Q ss_pred HHHHHHcCCcC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011378 193 RDEMLEKGCVM-DVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSI 271 (487)
Q Consensus 193 ~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 271 (487)
+++..+.. | |....+.++..+...|+.+++.++++...+.. +.|+..+..+-.+|...|+.++|+..|+...+..
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 77666532 3 35556667777777777777777776665543 3445566667777777777777777777655421
Q ss_pred CCCeeehHHHHHHHHccCCHHHHHHHHHHH
Q 011378 272 KPDIVTYNTLIDGFCKVGEMEKANKLWADM 301 (487)
Q Consensus 272 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 301 (487)
+.|..+...+.+++...|+.++|.++.++.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 225556666777777777777777766543
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1e-08 Score=93.49 Aligned_cols=205 Identities=13% Similarity=0.124 Sum_probs=143.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHH---HHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011378 251 CKDGNMNKALNLFDIMTQKSIKPDIVTYNTLID---GFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVT 327 (487)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~---~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~ 327 (487)
...|++++|.+.|++.... |.....+|.+ .+-+.|++++|++.|-.+.. -+.-+....--+.+.|-...+..
T Consensus 501 f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~-il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHA-ILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred eecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHhhCHH
Confidence 3457788888888776643 3333223322 24567888888888866532 11224445555666677777777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 011378 328 EAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKME 407 (487)
Q Consensus 328 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 407 (487)
.|++++.+.. .-++.|..+.+.|-..|-+.|+-..|.+++=+-- +-++.+..|..=|-..|....-++++..+|++..
T Consensus 576 qaie~~~q~~-slip~dp~ilskl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 576 QAIELLMQAN-SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHhc-ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888775543 2345577788888899999999888877653322 1345566777777777888888899999998765
Q ss_pred hCCCCCCHhhHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011378 408 NQGLVPDVITYNVILTGF-CRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNN 465 (487)
Q Consensus 408 ~~g~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~ 465 (487)
- +.|+..-|..+|..| .+.|++..|..++++... .+..|..+..-|++.+..-|.
T Consensus 654 l--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 654 L--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred h--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 4 579999999998876 578999999999998864 466778888888888877764
No 38
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.32 E-value=1.9e-07 Score=93.12 Aligned_cols=421 Identities=14% Similarity=0.132 Sum_probs=267.0
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CCccchHHHHHHHHhcCChhhHHHHH
Q 011378 11 IDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLK--PGVFTYNSLINGLCKKGRCDRAKEVL 88 (487)
Q Consensus 11 ~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~ 88 (487)
+..+...+...-... .-++...+.|-+-+.-.|+++.++.+..-+...... .-+.+|-.+-+++-..|+++.|..+|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 344444444332221 135566888888888899999999998877654311 12345667788888999999999999
Q ss_pred HHHHHCCCCCCHHHHH--HHHHHHHccCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhCC----CHHHHHHHHHHH
Q 011378 89 DEMLQMGLSPDTATYN--TLLVESCRKENMSEAEEIFCEMSRRGVAP-DIVSFSTLIGIFSRNG----QLDRALMYFREM 161 (487)
Q Consensus 89 ~~m~~~g~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g----~~~~a~~~~~~m 161 (487)
.+-.+. .|+.+++. -|-..+.+.|+++.+...|+...+. .| +..|...|-..|+..+ ..+.|..++.+.
T Consensus 331 ~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 331 MESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 876653 35544333 4566788899999999999888664 34 3445555555666654 456666666655
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH----HHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 011378 162 KSAGLVPDNVLYTIIINGYCRNGFVLEALKMR----DEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLER--- 234 (487)
Q Consensus 162 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~----~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 234 (487)
...- ..|...|-.+-..+- .++...++..+ +.|...+-.+.+...|.+-......|+++.|...|+.....
T Consensus 407 ~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 407 LEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred Hhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 4422 233445544444443 33333334433 34556666677888888888888999999999888887654
Q ss_pred CCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------------------------------CCC
Q 011378 235 GVFPDFY-------TFTTLIHGHCKDGNMNKALNLFDIMTQK-----------------------------------SIK 272 (487)
Q Consensus 235 ~~~~~~~-------t~~~li~~~~~~g~~~~a~~~~~~m~~~-----------------------------------~~~ 272 (487)
...+|.. -|| +-...-..++.+.|.++|....+. .-.
T Consensus 485 ~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n 563 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN 563 (1018)
T ss_pred hcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC
Confidence 1222221 122 222223334555555555544332 111
Q ss_pred CCeeehHHHHH-HHHccCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHHh
Q 011378 273 PDIVTYNTLID-GFCKVGEMEKANKLWADMISR-KISPNYISYGILINGYCS------------MGHVTEAFRLWYEMVG 338 (487)
Q Consensus 273 ~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~~------------~~~~~~a~~~~~~m~~ 338 (487)
|+ . .+++. .+.+...+..|.+-|..+.+. -..+|..+.-.|-+.|.. .++.++|+++|....+
T Consensus 564 p~--a-rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 564 PN--A-RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cH--H-HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 11 1 12222 444444444555444333322 112454444444443332 2457789999988876
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHhh
Q 011378 339 KGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQ-GLVPDVIT 417 (487)
Q Consensus 339 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~ 417 (487)
.. +.|...-|-+--+++..|++..|..+|....+... -+.-+|-.|-++|+..|++..|.++|+..... .-+-++..
T Consensus 641 ~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 641 ND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred cC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 53 55777777777788899999999999999998765 23345778889999999999999999877554 44457778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011378 418 YNVILTGFCRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 418 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 444 (487)
.+.|..++-++|++.+|...+......
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 899999999999999998877665554
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.32 E-value=1.1e-08 Score=99.13 Aligned_cols=129 Identities=12% Similarity=0.057 Sum_probs=75.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh---HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHh---h
Q 011378 344 TLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSIS---YNTLINGFVREENMDKAFALVSKMENQGLVPDVI---T 417 (487)
Q Consensus 344 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~ 417 (487)
+...+-.+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.+++..+. .|+.. .
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~l 337 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCI 337 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHH
Confidence 55556666666666677777766666665532 33221 111112223345566666666655443 34333 3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 418 YNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEM 476 (487)
Q Consensus 418 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m 476 (487)
..++-..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555666777777777777775444445677777777777777777777777777664
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.31 E-value=1.1e-08 Score=98.98 Aligned_cols=130 Identities=11% Similarity=0.028 Sum_probs=77.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCh---hhH
Q 011378 309 NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKG--YCRSGDASKADEFLSKMVSEGVDPDS---ISY 383 (487)
Q Consensus 309 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~ 383 (487)
+...+..+...+...|+.++|.++.++..+.........+. ++.. ....++.+.+.+.++...+. .|+. ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHH
Confidence 44555556666666666666666666655442211111111 2222 22345666666666665532 2332 445
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 011378 384 NTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRM 441 (487)
Q Consensus 384 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 441 (487)
.++-..|.+.|++++|.+.|+........||...+..+...+-+.|+.++|.+++++-
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5666777788888888888875333334678777778888888888888888877774
No 41
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=1.9e-08 Score=90.68 Aligned_cols=285 Identities=14% Similarity=0.129 Sum_probs=166.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011378 113 KENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKM 192 (487)
Q Consensus 113 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 192 (487)
.|++..|++....-.+++-.|-. .|....++--+.|+.+.+..++.+..+.--.++...+-+........|+.+.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l-~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~-- 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVL-AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR-- 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHH-HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH--
Confidence 46666666666666666554432 344455555566666666666666655322333333444444444444444444
Q ss_pred HHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011378 193 RDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIK 272 (487)
Q Consensus 193 ~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 272 (487)
.-.+++.+.+ +-++.........|.+.|++.....++..|.+.++-
T Consensus 174 ---------------------------------~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l 219 (400)
T COG3071 174 ---------------------------------ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL 219 (400)
T ss_pred ---------------------------------HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC
Confidence 4444443322 123344445555555555555555555555554443
Q ss_pred CCe-------eehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 011378 273 PDI-------VTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTL 345 (487)
Q Consensus 273 ~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 345 (487)
-+. .+|+.+++-....+..+.-...|++..+ ..+-+...-..++.-+.++|+.++|.++..+-.+++..|..
T Consensus 220 ~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L 298 (400)
T COG3071 220 SDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL 298 (400)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH
Confidence 332 3566666665555555555555554432 23333444456677777778888888877777777777662
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011378 346 VSCNTIIKGYCRSGDASKADEFLSKMV-SEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTG 424 (487)
Q Consensus 346 ~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (487)
.. +-.+.+.++.+.-.+..++-. ..+-.| -.+.+|-..|.+.+.+.+|...|+.-- ...|+..+|+-+.++
T Consensus 299 ~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~ 370 (400)
T COG3071 299 CR----LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADA 370 (400)
T ss_pred HH----HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHH
Confidence 22 224456666666666666544 334444 556777777888888888888887443 356888888888888
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 011378 425 FCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 425 ~~~~g~~~~a~~~~~~m~~ 443 (487)
|.+.|+..+|..+.++-..
T Consensus 371 ~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 371 LDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHcCChHHHHHHHHHHHH
Confidence 8888888888877776553
No 42
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.29 E-value=2.9e-08 Score=89.51 Aligned_cols=291 Identities=17% Similarity=0.139 Sum_probs=202.5
Q ss_pred cCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 011378 43 EGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEI 122 (487)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 122 (487)
.|++..|.++...-.+++-.|- ..|..-..+.-+.|+.+.+-.++.+.-+..-.++...+-+.-......|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 7888888888887766655442 234444556667888888888888877654455666666777777888888888888
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 123 FCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDN-------VLYTIIINGYCRNGFVLEALKMRDE 195 (487)
Q Consensus 123 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~ 195 (487)
++++.+.+-. +.........+|.+.|++..+..+...|.+.|+--|. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 8888776533 4556777888888888888888888888888765544 3688888877766666665555554
Q ss_pred HHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCC
Q 011378 196 MLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDI-MTQKSIKPD 274 (487)
Q Consensus 196 m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~-m~~~~~~~~ 274 (487)
.-+ ...-++..-.+++.-+.+.|+.++|.++..+..+++..|+. ...-.+.+-++...=++..+. ..+.+..|
T Consensus 255 ~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 255 QPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred ccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 422 22334555667777788888888888888888877665552 222344555665555555543 33444444
Q ss_pred eeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011378 275 IVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPT 344 (487)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 344 (487)
..+.+|=.-|.+.+.+.+|...|+.. -...|+..+|+.+-.++.+.|+..+|.++.++-...-.+|+
T Consensus 329 -~L~~tLG~L~~k~~~w~kA~~~leaA--l~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 329 -LLLSTLGRLALKNKLWGKASEALEAA--LKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred -hHHHHHHHHHHHhhHHHHHHHHHHHH--HhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 56777777788888888888888744 34568888888888888888888888888877654434443
No 43
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.28 E-value=3.8e-07 Score=90.43 Aligned_cols=362 Identities=14% Similarity=0.125 Sum_probs=228.8
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011378 110 SCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEA 189 (487)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 189 (487)
+++ |++++|.+++.+..+.. +-+...|-.|-..|-+.|+.++++..+-..-..+ +-|...|..+-+...+.|++.+|
T Consensus 150 far-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 444 88888888888776553 2355567788888888888888776655444332 23456777777777788888888
Q ss_pred HHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 190 LKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFY----TFTTLIHGHCKDGNMNKALNLFDI 265 (487)
Q Consensus 190 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----t~~~li~~~~~~g~~~~a~~~~~~ 265 (487)
.-.+.+..+.. ++++..+-.=+..|-+.|+...|.+-|.++....-+.|.. +.-.+++.+...++-+.|...++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88777776643 2445454555667777888888888888877643222222 233445666666777777777765
Q ss_pred HHH-CCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCC---------------------------CCChhhHHHHH
Q 011378 266 MTQ-KSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKI---------------------------SPNYISYGILI 317 (487)
Q Consensus 266 m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------------------------~p~~~t~~~li 317 (487)
... .+-..+...++.++..|.+...++.+.....++..... .++...+. +.
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~ 384 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LM 384 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-Hh
Confidence 544 23334556777888888888888887777766655211 12222211 11
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 011378 318 NGYCSMGHVTEAFRLWYEMVGKGI--KPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREEN 395 (487)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 395 (487)
-++......+...-+..-.....+ .-+...|.-+.++|...|++.+|..++........--+...|-.+-.+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 122222222222223333333332 233456777788888888888888888887765444456778888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCH
Q 011378 396 MDKAFALVSKMENQGLVPDVIT-YNVILTGFCRQGRMHDSELILWRMI--------EKGLNPDRSTYTTLINGHVSQNNL 466 (487)
Q Consensus 396 ~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~--------~~g~~p~~~ty~~l~~~~~~~~~~ 466 (487)
.+.|.+.+++.... .||... =-.|-..+-+.|+.++|.+++.++. ..++.|+...--.....+-..|+.
T Consensus 465 ~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred HHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 88888888776543 344322 2233345677888888888888743 344566666666677777788888
Q ss_pred HHHHHHHHHHHH
Q 011378 467 KEAFRFHDEMLQ 478 (487)
Q Consensus 467 ~~a~~~~~~m~~ 478 (487)
++=..+-.+|+.
T Consensus 543 E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 543 EEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHH
Confidence 877777666654
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=4.6e-08 Score=89.34 Aligned_cols=426 Identities=14% Similarity=0.129 Sum_probs=268.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCccchH-HHHHHHHhcCChhhHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 011378 36 LINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYN-SLINGLCKKGRCDRAKEVLDEMLQMGLSPD------TATYNTLLV 108 (487)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~~~------~~~~~~ll~ 108 (487)
|..-|.-..-..+|+..++-+.....-||.-... .+-..+.+.+.+..|.+++.-.+.. .|+ ....+.+-.
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigv 284 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCe
Confidence 3444444556788999999888877778764432 2345677888899999988654432 232 334555566
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChh--------hHHHHHHHH
Q 011378 109 ESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNV--------LYTIIINGY 180 (487)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--------~~~~ll~~~ 180 (487)
.+.+.|.++.|...|+...+. .|+..+--.|+-++..-|+-++..+.|.+|......||.. .-..|++--
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 788999999999999987665 5887766666767777889999999999987644333221 112222221
Q ss_pred Hh---------cC--CHHHHHHHHHHHHHcCCcCChhh---H----------H--------HHHHHHHhcCCHHHHHHHH
Q 011378 181 CR---------NG--FVLEALKMRDEMLEKGCVMDVVT---Y----------N--------TILNGLCRAKMLTEADDLF 228 (487)
Q Consensus 181 ~~---------~~--~~~~a~~~~~~m~~~g~~~~~~~---~----------~--------~li~~~~~~~~~~~a~~~~ 228 (487)
.+ .+ +.+++.-.-.++...-+.||-.. | . .-.--+.+.|+++.|.+++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 11 11 11121111111222112222110 0 0 0012356788999998888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCeeehHHHH-----HHHHccCCHHHHHHHHHHH
Q 011378 229 NEMLERGVFPDFYTFTTLIHGHCK--DGNMNKALNLFDIMTQKSIKPDIVTYNTLI-----DGFCKVGEMEKANKLWADM 301 (487)
Q Consensus 229 ~~m~~~~~~~~~~t~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~~~~~m 301 (487)
+-..++.-+.-+..-+.|-..+.- ..++..|.++-+... +..-||.-. +.-...|++++|...+++.
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al------n~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL------NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh------cccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 877665433333333333322222 334666665555433 222232221 1123478999999999998
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 011378 302 ISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSI 381 (487)
Q Consensus 302 ~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 381 (487)
....-.-....||+=+ .+-..|++++|+..|-.+..- +.-+..+.--+-..|-...+...|.+++-...+ =++.|+.
T Consensus 517 l~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~dp~ 593 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPNDPA 593 (840)
T ss_pred HcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHH
Confidence 7653322333344333 245678999999998776421 223444555566677777888888888765432 3556788
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011378 382 SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHV 461 (487)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~ 461 (487)
+.+.|-+.|-+.|+-.+|.+..=.-.. =+..+..+..=|...|....-++.+.+.|++.. =++|+.+-|..|+..|.
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHH
Confidence 999999999999999998886533221 123467777778888888888999999999853 47899999999997665
Q ss_pred h-cCCHHHHHHHHHHHH
Q 011378 462 S-QNNLKEAFRFHDEML 477 (487)
Q Consensus 462 ~-~~~~~~a~~~~~~m~ 477 (487)
+ .|+++.|+.++.+..
T Consensus 671 rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIH 687 (840)
T ss_pred HhcccHHHHHHHHHHHH
Confidence 5 699999999998874
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=2.7e-07 Score=80.96 Aligned_cols=225 Identities=15% Similarity=0.188 Sum_probs=132.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCe----eehHHHHHHHH
Q 011378 211 ILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDI----VTYNTLIDGFC 286 (487)
Q Consensus 211 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~ 286 (487)
|-.-|...|-++.|+.+|..+.+.+. .-.....-|+..|-...++++|+++-+.+.+.+-.+.. ..|.-|-..+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 33446677778888888877766432 12335566777788888888888877766655443332 13444555555
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHH
Q 011378 287 KVGEMEKANKLWADMISRKISPNYISY-GILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKAD 365 (487)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~~~~p~~~t~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 365 (487)
...+++.|..++....... |+.+-- -++-+.....|++..|.+.|+...+....--..+...|..+|...|+.++..
T Consensus 192 ~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 192 ASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5667777777776654432 222211 2344556677788888888877776655555566777778888888888887
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---cCChHHHHHHHHHHH
Q 011378 366 EFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCR---QGRMHDSELILWRMI 442 (487)
Q Consensus 366 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~ 442 (487)
.++..+.+....++.. ..+-..-....-.+.|...+-+-... +|+..-+..+|+.... .|...+..-++++|.
T Consensus 270 ~fL~~~~~~~~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 270 NFLRRAMETNTGADAE--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHccCCccHH--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 7777776654444432 11111111222334444444332222 5777777777776643 333444455555554
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=8.3e-06 Score=75.46 Aligned_cols=426 Identities=13% Similarity=0.113 Sum_probs=292.3
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChh
Q 011378 39 AYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPD-TATYNTLLVESCRKENMS 117 (487)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~ 117 (487)
.=...+++..|.++|+...... .-+...|---+..=.+...+..|..++++.... .|- ...|-..+..=-..|++.
T Consensus 82 wEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 82 WEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred HHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccH
Confidence 3344566777888888766533 234445666666777888888899998886542 233 345556666666678999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 118 EAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEML 197 (487)
Q Consensus 118 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 197 (487)
.|.++|+...+. .|+...|.+.|+.-.+-..++.|..+++...-. -|+...|-....-=-++|.+..+..+++...
T Consensus 159 gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 159 GARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999887664 799999999999999999999999999988753 4888888877777778898888888887665
Q ss_pred Hc-CCc-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH--------HH
Q 011378 198 EK-GCV-MDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPD--FYTFTTLIHGHCKDGNMNKALNLF--------DI 265 (487)
Q Consensus 198 ~~-g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~t~~~li~~~~~~g~~~~a~~~~--------~~ 265 (487)
+. |-. .+...+.+...-=.++..++.|.-+|+-..++ ++-+ ...|......=-+.|+-....++. +.
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 42 211 11222333333333567788888888877764 2222 234444444334445544333332 22
Q ss_pred HHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChh--h---HHHH-----HHHHHhcCCHHHHHHHHHH
Q 011378 266 MTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYI--S---YGIL-----INGYCSMGHVTEAFRLWYE 335 (487)
Q Consensus 266 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--t---~~~l-----i~~~~~~~~~~~a~~~~~~ 335 (487)
+.+.+ +.|-.+|--.++.-...|+.+...++|..... +++|-.. . |-.| +--=....+++.+.++++.
T Consensus 314 ~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 314 EVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22221 23455666677777778999999999988764 4444221 1 1111 1112346788889999988
Q ss_pred HHhCCCCC-ChhhHHHHHH----HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 011378 336 MVGKGIKP-TLVSCNTIIK----GYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQG 410 (487)
Q Consensus 336 m~~~~~~~-~~~~~~~li~----~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 410 (487)
..+ +-| ..+||.-+=- --.++.++..|.+++...+ |..|-..+|..-|..=.+.+++|...+++++..+.+
T Consensus 392 ~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 392 CLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 876 344 4455554433 3347889999999988655 788999999888888889999999999999988754
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011378 411 LVPDVITYNVILTGFCRQGRMHDSELILWRMIEK-GLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQR 479 (487)
Q Consensus 411 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~ 479 (487)
.-+..+|.-....=..-|+++.|+.+|.-.... .+.-....|...|+--...|.++.|..+++++++.
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 235677887777777889999999999876643 23345567788888888899999999999999864
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=7.8e-07 Score=78.19 Aligned_cols=270 Identities=14% Similarity=0.119 Sum_probs=145.8
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHhCCCHHH
Q 011378 78 KGRCDRAKEVLDEMLQMGLSPDTA-TYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDI---VSFSTLIGIFSRNGQLDR 153 (487)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~ 153 (487)
..+.++|.+.|-+|.+. .|.+. +--+|-..|-+.|.++.|.++.+.+.++.--+.. ...--|-.-|-.+|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 45667777777777652 22222 2223444566667777777777776653111111 112234455667777777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCCh----hhHHHHHHHHHhcCCHHHHHHHHH
Q 011378 154 ALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDV----VTYNTILNGLCRAKMLTEADDLFN 229 (487)
Q Consensus 154 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~ 229 (487)
|..+|..+.+.|- .-....-.|+..|-...++++|.++-+++.+.+-.+.. ..|.-+-..+....+++.|...++
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 7777777765321 11234556677777777777777777776665443322 134444444445566666777666
Q ss_pred HHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 011378 230 EMLERGVFPDFYTFT-TLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISP 308 (487)
Q Consensus 230 ~m~~~~~~~~~~t~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 308 (487)
+..+.+ |+..--+ .+-+.....|+++.|++.++...+.+...-..+...|..+|...|+.++....+..+......+
T Consensus 205 kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 205 KALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 665532 2222222 2334566667777777777666655433334456666677777777777666666665543333
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011378 309 NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYC 356 (487)
Q Consensus 309 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 356 (487)
+.. ..+-.--....-.+.|.....+-.+. +|+...+..||+...
T Consensus 283 ~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 283 DAE--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred cHH--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 322 22222222233344444444433322 566666666665544
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.08 E-value=1.7e-07 Score=83.36 Aligned_cols=197 Identities=14% Similarity=0.147 Sum_probs=110.0
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011378 278 YNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCR 357 (487)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 357 (487)
+..+...+...|++++|...+.+..... +.+...+..+...+...|++++|...++...... +.+...+..+...+..
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 3344444455555555555554443321 1123444555555555566666666555554432 2233444555555566
Q ss_pred cCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 011378 358 SGDASKADEFLSKMVSEGVDP-DSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSEL 436 (487)
Q Consensus 358 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 436 (487)
.|+.++|.+.++........| ....+..+...+...|++++|...+++..... ..+...+..+...+...|++++|..
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666655432212 23345555566667777777777776665432 1234456666677777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 437 ILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 478 (487)
Q Consensus 437 ~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~ 478 (487)
.+++.... ...+...+..+...+...|+.+.|..+.+.+..
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 191 YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77776654 233445555666667777777777777666643
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.05 E-value=1.9e-07 Score=82.99 Aligned_cols=195 Identities=15% Similarity=0.073 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHH
Q 011378 207 TYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFC 286 (487)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 286 (487)
.+..+...+...|+++.|.+.+++..+.. +.+...+..+...+...|+.++|...++...+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444455555555555555555554332 1223444445555555555555555555444321 112223344444445
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHH
Q 011378 287 KVGEMEKANKLWADMISRKISP-NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKAD 365 (487)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 365 (487)
..|++++|.+.+.+.......| ....+..+...+...|++++|...+....... +.+...+..+...+...|+.++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555444321111 12233334444444455555555444443321 112233334444444444444444
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 011378 366 EFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSK 405 (487)
Q Consensus 366 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 405 (487)
..+++..+. .+.+...+..+...+...|+.+.|..+.+.
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444444333 112223333334444444444444444433
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.5e-05 Score=73.61 Aligned_cols=343 Identities=15% Similarity=0.089 Sum_probs=212.7
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHHHHH-HHHHHHccCChh
Q 011378 40 YCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPD-TATYNT-LLVESCRKENMS 117 (487)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~-ll~~~~~~~~~~ 117 (487)
+.+.|..+.|.+.|...... -+..|.+.+.-..-..+.+.+..+.. |...| ...-.. +..++-.....+
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~~a~~el~q~~ 244 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLKKAYQELHQHE 244 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHHHHHHHHHHHH
Confidence 44566667777666554431 23456555554433333333322221 11111 111111 223344445677
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCH-HHHHHHHH
Q 011378 118 EAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGL--VPDNVLYTIIINGYCRNGFV-LEALKMRD 194 (487)
Q Consensus 118 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~-~~a~~~~~ 194 (487)
++.+-.+.....|..-+...-+-...+.-...++|+|+.+|++..+... --|..+|+.++-.--....+ --|..+..
T Consensus 245 e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~ 324 (559)
T KOG1155|consen 245 EALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN 324 (559)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence 7777777777777765554444444455677889999999999887632 12456777766432221111 11111111
Q ss_pred HHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011378 195 EMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPD 274 (487)
Q Consensus 195 ~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 274 (487)
-. .--+.|+.++-+-|+-.++.+.|...|+...+-+ +-....|+.|-+-|..-.+...|++-++...+-. +.|
T Consensus 325 ---id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~D 397 (559)
T KOG1155|consen 325 ---ID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRD 397 (559)
T ss_pred ---hc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chh
Confidence 11 2334677778888888889999999999887643 1234568888888999999999998888765432 236
Q ss_pred eeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011378 275 IVTYNTLIDGFCKVGEMEKANKLWADMISRKISP-NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIK 353 (487)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 353 (487)
-..|-.|=++|.-.+...=|+-.|++.. .++| |...|..|-++|.+.++.++|++-|......| ..+...+..|-+
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~--~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~Lak 474 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKAL--ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAK 474 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHH--hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHH
Confidence 6678888888888888888888887654 3444 67889999999999999999999888776655 235567778888
Q ss_pred HHHhcCChHHHHHHHHHHHH----CCCCCChhhH--HHHHHHHhccCCHHHHHH
Q 011378 354 GYCRSGDASKADEFLSKMVS----EGVDPDSISY--NTLINGFVREENMDKAFA 401 (487)
Q Consensus 354 ~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~~--~~li~~~~~~~~~~~a~~ 401 (487)
.|-+.++.++|...+.+-.+ .|...|.... -=|-.-+.+.+++++|..
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 88888888888888776553 2332221111 113344455566655544
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=2.2e-05 Score=72.76 Aligned_cols=421 Identities=12% Similarity=0.115 Sum_probs=255.6
Q ss_pred cCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 011378 43 EGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEI 122 (487)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 122 (487)
.|++..|.++|+.-.+ ..|+...|.+.|+.=.+-...+.|..++++..- +.|+..+|-...+-=-++|++..+..+
T Consensus 154 LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4666666666665443 357777777777766667777777777776653 346777766666666666777777777
Q ss_pred HHHHHHC-CC-CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHH------
Q 011378 123 FCEMSRR-GV-APDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD--NVLYTIIINGYCRNGFVLEALKM------ 192 (487)
Q Consensus 123 ~~~m~~~-g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~------ 192 (487)
++...+. |- .-+...|.+...--.++..++.|.-+|.-.... ++.+ ...|..+..-=-+-|+.......
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 6655432 10 001122223333333445566666666554432 1111 22344443333344544333222
Q ss_pred --HHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHH---HHhcCCHHHHH
Q 011378 193 --RDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDF-------YTFTTLIHG---HCKDGNMNKAL 260 (487)
Q Consensus 193 --~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~t~~~li~~---~~~~g~~~~a~ 260 (487)
++.+.+. .+.|=.+|--.+..-...|+.+...++|+.... +++|-. +.|.-+=-+ =....+++.+.
T Consensus 309 ~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2222221 234445666667777778999999999999875 455532 122222122 23467889999
Q ss_pred HHHHHHHHCCCCCCeeehHHHHHHHH----ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 261 NLFDIMTQKSIKPDIVTYNTLIDGFC----KVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEM 336 (487)
Q Consensus 261 ~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 336 (487)
++|+...+ -++-...||..+=-.|+ ++.++..|.+++... -|..|-..+|..-|..=.+.+.++.+..+++..
T Consensus 387 ~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A--IG~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA--IGKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH--hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99988776 44445677776655554 567889999988765 378899999999999999999999999999998
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH
Q 011378 337 VGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEG-VDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDV 415 (487)
Q Consensus 337 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 415 (487)
...+ +-|..+|.-.-.-=...|+.+.|..+|+-..+.. .......|-+-|+-=...|.+++|..+++++.+.. +.+
T Consensus 464 le~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~ 540 (677)
T KOG1915|consen 464 LEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHV 540 (677)
T ss_pred HhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccc
Confidence 7654 4466677666555567799999999999887642 12223334444444457899999999999987652 333
Q ss_pred hhHHHHHHHHH-----hcC-----------ChHHHHHHHHHHHH--cCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHH
Q 011378 416 ITYNVILTGFC-----RQG-----------RMHDSELILWRMIE--KGLNPDR---STYTTLINGHVSQNNLKEAFRFHD 474 (487)
Q Consensus 416 ~~~~~li~~~~-----~~g-----------~~~~a~~~~~~m~~--~g~~p~~---~ty~~l~~~~~~~~~~~~a~~~~~ 474 (487)
-+|-++...=. +.| .+..|+++|++... +...|.. ...+.+.+.-...|.-.+...+-.
T Consensus 541 kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s 620 (677)
T KOG1915|consen 541 KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQS 620 (677)
T ss_pred hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 35555544322 444 56678888887642 1222322 244455555555565444444433
Q ss_pred HH
Q 011378 475 EM 476 (487)
Q Consensus 475 ~m 476 (487)
.|
T Consensus 621 ~m 622 (677)
T KOG1915|consen 621 KM 622 (677)
T ss_pred hc
Confidence 33
No 52
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.99 E-value=3.6e-05 Score=74.17 Aligned_cols=451 Identities=12% Similarity=0.085 Sum_probs=305.4
Q ss_pred ChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHH
Q 011378 10 KIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLD 89 (487)
Q Consensus 10 ~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 89 (487)
..+.|.-++++..+. -| +-..|.-++++..-++.|..+++..++. ++-+...|.+--.-=-+.|+.+.+.++++
T Consensus 391 ~~~darilL~rAvec--cp---~s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 391 EPEDARILLERAVEC--CP---QSMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred ChHHHHHHHHHHHHh--cc---chHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 445577777776552 12 2345667778888888888888887653 44466677655554456888888888876
Q ss_pred H----HHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 011378 90 E----MLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPD--IVSFSTLIGIFSRNGQLDRALMYFREMKS 163 (487)
Q Consensus 90 ~----m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 163 (487)
+ +...|+..+..-|-.=-..|-+.|.+-.+..+.......|+.-. ..||..--..|.+.+.++-|..+|....+
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 5 45668888888888877888888888888888888877776542 35788888888999999988888888766
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011378 164 AGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTF 243 (487)
Q Consensus 164 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~ 243 (487)
- ..-+...|......=-..|..++...++.+.....- -....|--....+-..|+...|..++....+.. +.+...|
T Consensus 545 v-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiw 621 (913)
T KOG0495|consen 545 V-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIW 621 (913)
T ss_pred h-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHH
Confidence 3 233456777777777777888888888887776532 223345445566667788888888888887754 2256678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHh
Q 011378 244 TTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNY-ISYGILINGYCS 322 (487)
Q Consensus 244 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~t~~~li~~~~~ 322 (487)
-+-+..-..+..++.|..+|...+. ..|+...|.--++.-.-.+..++|.+++++..+. -|+. ..|-.+-..+-+
T Consensus 622 laavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 8888888888888888888876654 4566666666666666677888888888766543 2443 345555555666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHH
Q 011378 323 MGHVTEAFRLWYEMVGKGIKPTL-VSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFA 401 (487)
Q Consensus 323 ~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 401 (487)
.++++.|...|..=. ..-|+. -.|-.|-+.=-+.|.+.+|..+++.-.-++ +-+...|-..|..=.+.|+.+.|..
T Consensus 698 ~~~ie~aR~aY~~G~--k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 698 MENIEMAREAYLQGT--KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHhcc--ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 666666666554321 123333 334444444455667777777777655433 2345567777777777777777776
Q ss_pred HHHHHH----hCCC-------------------------CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-H
Q 011378 402 LVSKME----NQGL-------------------------VPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR-S 451 (487)
Q Consensus 402 ~~~~m~----~~g~-------------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ 451 (487)
++.+.. ..|+ .-|.+..-.+...|-...+++.|+..|.+.... .||- -
T Consensus 775 lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD 852 (913)
T KOG0495|consen 775 LMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGD 852 (913)
T ss_pred HHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccch
Confidence 654322 1222 234555666667777788899999999987654 4544 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 452 TYTTLINGHVSQNNLKEAFRFHDEMLQ 478 (487)
Q Consensus 452 ty~~l~~~~~~~~~~~~a~~~~~~m~~ 478 (487)
+|.-+..-+.++|.=++-.+++..-.+
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 777788889999977777777666543
No 53
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.97 E-value=3.2e-06 Score=82.73 Aligned_cols=288 Identities=14% Similarity=0.150 Sum_probs=163.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHH-HHHHHHHh-----
Q 011378 144 IFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYN-TILNGLCR----- 217 (487)
Q Consensus 144 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~----- 217 (487)
.+...|++++|++.++.-.. .+...........+.+.+.|+.++|..++..+.+.+ ||-..|- .+..+.+-
T Consensus 13 il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 34455555555555544222 122222333444455555556666655555555543 3333332 22222211
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHH
Q 011378 218 AKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNM-NKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANK 296 (487)
Q Consensus 218 ~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 296 (487)
....+...++++++...- |.......+.-.+.....+ ..+..++..+.++|+++ +|+.|-..|......+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 123455556666554432 3322222222122221112 22233334445555543 45555555554444444444
Q ss_pred HHHHHHhC--------------CCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcC
Q 011378 297 LWADMISR--------------KISPNYI--SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPT-LVSCNTIIKGYCRSG 359 (487)
Q Consensus 297 ~~~~m~~~--------------~~~p~~~--t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~ 359 (487)
++...... .-.|+.. ++..+-..|-..|++++|+...+.-+.+ +|+ +..|..--+.+.+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 44443321 1234443 3455677788899999999999987765 455 556777788899999
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhh--------HHHHHHHHHhcCCh
Q 011378 360 DASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVIT--------YNVILTGFCRQGRM 431 (487)
Q Consensus 360 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--------~~~li~~~~~~g~~ 431 (487)
++.+|.+.++....... -|...-+.....+.+.|++++|.+++......+..|-... ..-.-.+|.++|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999998876543 3777888888889999999999999998876654443221 13344688899999
Q ss_pred HHHHHHHHHHH
Q 011378 432 HDSELILWRMI 442 (487)
Q Consensus 432 ~~a~~~~~~m~ 442 (487)
..|.+-|....
T Consensus 322 ~~ALk~~~~v~ 332 (517)
T PF12569_consen 322 GLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHH
Confidence 99977555543
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.3e-05 Score=71.51 Aligned_cols=256 Identities=12% Similarity=0.146 Sum_probs=161.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcC
Q 011378 177 INGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGV--FPDFYTFTTLIHGHCKDG 254 (487)
Q Consensus 177 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~t~~~li~~~~~~g 254 (487)
..++-.....+++..-.+.+...|++-+...-+-...+.....++++|+.+|++..++.- .-|..+|+.++ |.+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 345555566777777777777777766655555555556677888888888888877631 12566777776 34443
Q ss_pred CHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHH
Q 011378 255 NMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPN-YISYGILINGYCSMGHVTEAFRLW 333 (487)
Q Consensus 255 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~~~ 333 (487)
..+.+.-......-...+| .|...+-+-|+-.++-++|...|+...+- .|. ...|+.+-.=|....+...|..-+
T Consensus 312 ~skLs~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hHHHHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 3222221111112233333 35555666667777777788877765533 343 345666666677777777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 011378 334 YEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDP-DSISYNTLINGFVREENMDKAFALVSKMENQGLV 412 (487)
Q Consensus 334 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 412 (487)
+.-++-. +.|-..|-.|=++|.-.+...-|.-.|++... .+| |...|.+|-.+|.+.++.++|++.+.+.-..| .
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 6654332 34556666777777777777777777776554 334 56677777777777777777777777766543 2
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 413 PDVITYNVILTGFCRQGRMHDSELILWRMI 442 (487)
Q Consensus 413 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 442 (487)
.+...+..|...|-+-++..+|.+.+.+-.
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344667777777777777777776666544
No 55
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=2.9e-07 Score=88.43 Aligned_cols=277 Identities=15% Similarity=0.103 Sum_probs=179.1
Q ss_pred ChhHHHHHHHHHhhCCCCCCcc-chHHHHHHHHhcCChhhHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChh-HHH
Q 011378 45 FLEEAFQLMNSMSGKGLKPGVF-TYNSLINGLCKKGRCDRAKEVLDEMLQMG--LSPDTATYNTLLVESCRKENMS-EAE 120 (487)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~-~a~ 120 (487)
+.++|..+|+....+ .+|+. +..-+-.+|...++++++.++|+...+.. ..-+..+|.++|..+-+.-.+. .|.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 457888888885554 34443 33445678888999999999999887542 1236778888888764432211 222
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011378 121 EIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVP-DNVLYTIIINGYCRNGFVLEALKMRDEMLEK 199 (487)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 199 (487)
.+.+.+ +-.+.+|.++-++|+-.++.+.|++.|+...+. .| ...+|+.+=.-+......+.|...|+.-
T Consensus 412 ~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~A--- 481 (638)
T KOG1126|consen 412 DLIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKA--- 481 (638)
T ss_pred HHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhh---
Confidence 222222 234668999999999999999999999987763 45 4667777766677777778887777654
Q ss_pred CCcCChhhHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCee
Q 011378 200 GCVMDVVTYNTI---LNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIV 276 (487)
Q Consensus 200 g~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 276 (487)
+..|+..||+. --.|.+.++++.|+-.|++..+-+ +-+.+....+...+.+.|+.|+|+++++....-.-+ |..
T Consensus 482 -l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 482 -LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred -hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 44677777764 455778888888888888776533 224555666667777888888888888766532211 222
Q ss_pred ehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011378 277 TYNTLIDGFCKVGEMEKANKLWADMISRKISPN-YISYGILINGYCSMGHVTEAFRLWYEMVG 338 (487)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 338 (487)
.--.....+...++.++|+..+++++.- .|+ ...+..+...|-+.|+.+.|..-|..+.+
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 2122333444556667777766666432 333 34455566666666666666666655543
No 56
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.95 E-value=4.2e-06 Score=81.93 Aligned_cols=289 Identities=18% Similarity=0.220 Sum_probs=198.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCcCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHh---
Q 011378 178 NGYCRNGFVLEALKMRDEMLEKGCVMDVVT-YNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTF-TTLIHGHCK--- 252 (487)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~-~~li~~~~~--- 252 (487)
..+...|+.++|++.++.-. ...+|... .......+.+.|+.++|..+|..+.+++ |+-..| ..+..+..-
T Consensus 12 ~il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 44567899999999987633 33456554 4566688889999999999999999876 555554 444444422
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHH-HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011378 253 --DGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEME-KANKLWADMISRKISPNYISYGILINGYCSMGHVTEA 329 (487)
Q Consensus 253 --~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a 329 (487)
....+....+++.+...- |.......+.-.+.....++ .+...+..+...|+++ +|+.|-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 235778888888876543 33333333332233323343 3455556666777654 566666666666566666
Q ss_pred HHHHHHHHhC----C----------CCCChhhH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhc
Q 011378 330 FRLWYEMVGK----G----------IKPTLVSC--NTIIKGYCRSGDASKADEFLSKMVSEGVDPD-SISYNTLINGFVR 392 (487)
Q Consensus 330 ~~~~~~m~~~----~----------~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 392 (487)
..++...... + -.|....| .-+-+.|...|+.++|.+.+++.++. .|+ +..|..--..+-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 6666665432 1 12333334 45577788999999999999988864 465 4567777788889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH------H--HHHHHHHHhcC
Q 011378 393 EENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRST------Y--TTLINGHVSQN 464 (487)
Q Consensus 393 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t------y--~~l~~~~~~~~ 464 (487)
.|++++|.+.++...... .-|...-+-.+..+.++|++++|++++......+..|-... | ...-.+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999887654 23777888888889999999999999988876665443221 1 23467999999
Q ss_pred CHHHHHHHHHHHHH
Q 011378 465 NLKEAFRFHDEMLQ 478 (487)
Q Consensus 465 ~~~~a~~~~~~m~~ 478 (487)
++..|++.+....+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999998877654
No 57
>PF12854 PPR_1: PPR repeat
Probab=98.92 E-value=1.4e-09 Score=63.32 Aligned_cols=32 Identities=38% Similarity=0.855 Sum_probs=19.4
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 011378 410 GLVPDVITYNVILTGFCRQGRMHDSELILWRM 441 (487)
Q Consensus 410 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 441 (487)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55566666666666666666666666666555
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.92 E-value=6.3e-07 Score=86.58 Aligned_cols=166 Identities=18% Similarity=0.187 Sum_probs=102.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh---C--C-CCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC--
Q 011378 312 SYGILINGYCSMGHVTEAFRLWYEMVG---K--G-IKPTLV-SCNTIIKGYCRSGDASKADEFLSKMVSE---GVDPD-- 379 (487)
Q Consensus 312 t~~~li~~~~~~~~~~~a~~~~~~m~~---~--~-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~-- 379 (487)
+++.|-.+|.+.|++++|...++...+ + | ..|.+. -++.+...|+..+++++|..+++...+. -..++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 344444455555555555444443211 1 1 112222 2455556666777777777777654431 12222
Q ss_pred --hhhHHHHHHHHhccCCHHHHHHHHHHHH----hCCCCCCH---hhHHHHHHHHHhcCChHHHHHHHHHHHH----cCC
Q 011378 380 --SISYNTLINGFVREENMDKAFALVSKME----NQGLVPDV---ITYNVILTGFCRQGRMHDSELILWRMIE----KGL 446 (487)
Q Consensus 380 --~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~ 446 (487)
..+++.|-..|.+.|++++|++++++.. +.+-+-+. ..++-|-..|.+.+++++|.++|.+-.. .|.
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 2468888888888888888888877553 22222222 3467777788888888888888877543 232
Q ss_pred C-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 447 N-PDR-STYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 447 ~-p~~-~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
. |+. .+|..|...|...|+++.|.++.+...
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 333 478888889999999999998887765
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=6.6e-05 Score=70.01 Aligned_cols=232 Identities=13% Similarity=0.065 Sum_probs=159.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHH
Q 011378 217 RAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANK 296 (487)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 296 (487)
-.|+.-++..-|+...+..-.++. .|.-+-..|....+.++....|....+-.- -|..+|..=-..+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHH
Confidence 357788888888888765433222 266666778899999999999987665321 144566555566666678889988
Q ss_pred HHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011378 297 LWADMISRKISP-NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEG 375 (487)
Q Consensus 297 ~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 375 (487)
=|.+.++- .| +...|--+--+.-+.++++++...|++.+++ ++.....|+..-..+...++++.|.+.++..++..
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 88776543 34 3344545555556788999999999998754 66677889999999999999999999999877532
Q ss_pred -----CC--CChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011378 376 -----VD--PDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLN 447 (487)
Q Consensus 376 -----~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 447 (487)
+. +.+.+--.++-.-.+ ++++.|.+++.+--+. .| ....|..|...-.++|++++|..+|++-...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l--- 566 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL--- 566 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---
Confidence 21 222223333333333 8899999999877553 34 3356888888889999999999999885431
Q ss_pred CCHHHHHHHHHHHH
Q 011378 448 PDRSTYTTLINGHV 461 (487)
Q Consensus 448 p~~~ty~~l~~~~~ 461 (487)
..|-..++++|.
T Consensus 567 --Art~~E~~~a~s 578 (606)
T KOG0547|consen 567 --ARTESEMVHAYS 578 (606)
T ss_pred --HHhHHHHHHHHH
Confidence 234455555544
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.87 E-value=2.3e-06 Score=82.82 Aligned_cols=129 Identities=20% Similarity=0.207 Sum_probs=66.5
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-
Q 011378 278 YNTLIDGFCKVGEMEKANKLWADMISR---KISPN----YISYGILINGYCSMGHVTEAFRLWYEMVGK----GI--KP- 343 (487)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----~~--~~- 343 (487)
++.+...++..+++++|..++....+. -+.++ ..+++.|-..|...|++++|.++++..+.. +- .+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 344444455555555555555433221 11121 135566666666666666666666554321 11 11
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHH----CCC-CCC-hhhHHHHHHHHhccCCHHHHHHHHHHH
Q 011378 344 TLVSCNTIIKGYCRSGDASKADEFLSKMVS----EGV-DPD-SISYNTLINGFVREENMDKAFALVSKM 406 (487)
Q Consensus 344 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m 406 (487)
.-..++-|-..|.+.++.+.|.++|.+... -|. .|| ..+|..|...|-+.|++++|.++.+..
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 123455555566666666666666554332 121 122 346777777777777777777766544
No 61
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=1.7e-06 Score=83.23 Aligned_cols=196 Identities=17% Similarity=0.112 Sum_probs=89.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHH
Q 011378 205 VVTYNTILNGLCRAKMLTEADDLFNEMLERGVFP-DFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLID 283 (487)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 283 (487)
+.+|.++-++|.-+++.+.|.+.|++..+. .| ..++|+.+-+-+....++|.|...|+... ..|...||+.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAw-- 492 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAW-- 492 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHH--
Confidence 345555555555555555555555554432 23 33444444444444445555554443322 2333333332
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChH
Q 011378 284 GFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKP-TLVSCNTIIKGYCRSGDAS 362 (487)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~ 362 (487)
-.|-..|.+.++++.|+-.|+.... +.| +.+....+-..+-+.|+.+
T Consensus 493 ------------------------------YGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d 540 (638)
T KOG1126|consen 493 ------------------------------YGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKD 540 (638)
T ss_pred ------------------------------HhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhh
Confidence 2233344444555555444443321 222 2233333444444555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHH
Q 011378 363 KADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVI-TYNVILTGFCRQGRMHDSELILWRM 441 (487)
Q Consensus 363 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m 441 (487)
+|.+++++.....-+ |+..----...+...++.++|...++++++ +.|+.. .|-.+...|.+.|+.+.|..-|--+
T Consensus 541 ~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 541 KALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 555555554432211 111111112223345566666666666665 245443 3444444666666666665555544
Q ss_pred HH
Q 011378 442 IE 443 (487)
Q Consensus 442 ~~ 443 (487)
.+
T Consensus 618 ~~ 619 (638)
T KOG1126|consen 618 LD 619 (638)
T ss_pred hc
Confidence 33
No 62
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=2.8e-05 Score=78.29 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=31.2
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH
Q 011378 6 CKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEE 48 (487)
Q Consensus 6 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~ 48 (487)
-|..++.-...+++...+.|. .|..++|++.+.|...++-.+
T Consensus 849 EkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE 890 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPE 890 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChH
Confidence 456667777778888888886 488888888888877665444
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=98.86 E-value=3.1e-06 Score=85.40 Aligned_cols=178 Identities=12% Similarity=0.040 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-eeehHHHHHHHHccCCHHHHHHHH
Q 011378 220 MLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPD-IVTYNTLIDGFCKVGEMEKANKLW 298 (487)
Q Consensus 220 ~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~ 298 (487)
++++|...+++..+.. +-+...+..+-..+...|+.++|...|+...+.. |+ ...+..+-..+...|++++|...+
T Consensus 319 ~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 319 AMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4666777776666542 2245556666666666777777777776665442 32 334555666667777777777777
Q ss_pred HHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011378 299 ADMISRKISPNYI-SYGILINGYCSMGHVTEAFRLWYEMVGKGIKP-TLVSCNTIIKGYCRSGDASKADEFLSKMVSEGV 376 (487)
Q Consensus 299 ~~m~~~~~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 376 (487)
++..... |+.. .+..+...+...|++++|...+++..... .| +...+..+-.++...|+.++|...++++...
T Consensus 396 ~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-- 470 (553)
T PRK12370 396 NECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-- 470 (553)
T ss_pred HHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--
Confidence 6665432 3221 22223334555667777777776655432 23 2333445555666677777777777665432
Q ss_pred CCCh-hhHHHHHHHHhccCCHHHHHHHHHHHH
Q 011378 377 DPDS-ISYNTLINGFVREENMDKAFALVSKME 407 (487)
Q Consensus 377 ~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 407 (487)
.|+. ...+.|-..|+..| ++|...++++.
T Consensus 471 ~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred cchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 2332 23344444555555 35666555554
No 64
>PF12854 PPR_1: PPR repeat
Probab=98.83 E-value=4.6e-09 Score=61.09 Aligned_cols=32 Identities=44% Similarity=0.941 Sum_probs=20.4
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 011378 375 GVDPDSISYNTLINGFVREENMDKAFALVSKM 406 (487)
Q Consensus 375 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 406 (487)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=98.79 E-value=4.7e-06 Score=84.04 Aligned_cols=261 Identities=13% Similarity=0.029 Sum_probs=173.8
Q ss_pred hhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHC
Q 011378 205 VVTYNTILNGLCR-----AKMLTEADDLFNEMLERGVFPD-FYTFTTLIHGHC---------KDGNMNKALNLFDIMTQK 269 (487)
Q Consensus 205 ~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~-~~t~~~li~~~~---------~~g~~~~a~~~~~~m~~~ 269 (487)
...|...+.+-.. .+.++.|...|++..+. .|+ ...|..+-.++. ..++.++|...++...+.
T Consensus 256 ~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 256 IDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred hHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 3445455554321 23467888999888764 354 344544444333 234578999999877654
Q ss_pred CCCC-CeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hh
Q 011378 270 SIKP-DIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTL-VS 347 (487)
Q Consensus 270 ~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~ 347 (487)
.| +...+..+-..+...|++++|...|++..+.. +.+...+..+-..+...|++++|...++...+. .|+. ..
T Consensus 334 --dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 334 --DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred --CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 34 44567777777888999999999999887653 223556778888999999999999999998765 3443 23
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHH
Q 011378 348 CNTIIKGYCRSGDASKADEFLSKMVSEGVDP-DSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVI-TYNVILTGF 425 (487)
Q Consensus 348 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~ 425 (487)
+..+...+...|+.++|...+++..+.. .| +...+..+-.++...|+.++|...+.++... .|+.. ..+.+...|
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 3334445667899999999999887543 24 3445677778888999999999999887543 34433 345555567
Q ss_pred HhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011378 426 CRQGRMHDSELILWRMIEK-GLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQRG 480 (487)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~-g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~g 480 (487)
.+.| +.+...++.+.+. +-.|.-.-+..+ .|.-.|+.+.+... +++.+.|
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 7777 5787777777642 223333333333 44455777777666 7776654
No 66
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.77 E-value=0.00024 Score=68.79 Aligned_cols=392 Identities=14% Similarity=0.064 Sum_probs=299.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 011378 37 INAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENM 116 (487)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 116 (487)
=++.+...+.+.|.-+++...+. -|.+ .-|.-++++..-|+.|.++++...+. ++-+...|.+--..--..|+.
T Consensus 383 WKaAVelE~~~darilL~rAvec--cp~s---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~ 456 (913)
T KOG0495|consen 383 WKAAVELEEPEDARILLERAVEC--CPQS---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNV 456 (913)
T ss_pred HHHHHhccChHHHHHHHHHHHHh--ccch---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCH
Confidence 34455566777788777776552 3332 23556788888999999999988753 555677887766666778999
Q ss_pred hHHHHHHHH----HHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHH
Q 011378 117 SEAEEIFCE----MSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD--NVLYTIIINGYCRNGFVLEAL 190 (487)
Q Consensus 117 ~~a~~~~~~----m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~ 190 (487)
+.+.+++++ +...|+..+...|-.=...|-+.|..-.+-.+.......|++-. ..||..--+.|.+.+.++-+.
T Consensus 457 ~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~car 536 (913)
T KOG0495|consen 457 DMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECAR 536 (913)
T ss_pred HHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHH
Confidence 999998764 56789999999998888899999998888878777776666543 458999999999999999999
Q ss_pred HHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011378 191 KMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKS 270 (487)
Q Consensus 191 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 270 (487)
.++....+- ++-+...|......=-..|..+..+.+|++....- +-....|--....+-..|++..|..++...-+..
T Consensus 537 AVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~ 614 (913)
T KOG0495|consen 537 AVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN 614 (913)
T ss_pred HHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Confidence 998877653 34456678877777778899999999999998752 2233455555567778899999999998877654
Q ss_pred CCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011378 271 IKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNT 350 (487)
Q Consensus 271 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 350 (487)
-. +..+|-+-++--..+.+++.|..+|.+... ..|+...|.--+..---.+..++|.+++++-.+. ++--...|..
T Consensus 615 pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lm 690 (913)
T KOG0495|consen 615 PN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLM 690 (913)
T ss_pred CC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHH
Confidence 33 556788888888999999999999987654 5677777766666666678999999999887653 3333456777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 011378 351 IIKGYCRSGDASKADEFLSKMVSEGVDPDSI-SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQG 429 (487)
Q Consensus 351 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 429 (487)
+=+.+-+.++++.|.+.|.. .....|+.. .|-.|...=-+.|.+-+|..++++-...+ .-+...|-..|..=.+.|
T Consensus 691 lGQi~e~~~~ie~aR~aY~~--G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAYLQ--GTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAG 767 (913)
T ss_pred HhHHHHHHHHHHHHHHHHHh--ccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcC
Confidence 77888899999999888763 223456654 55555555567789999999999887654 346788999999999999
Q ss_pred ChHHHHHHHHHHHH
Q 011378 430 RMHDSELILWRMIE 443 (487)
Q Consensus 430 ~~~~a~~~~~~m~~ 443 (487)
..+.|+.++.+.++
T Consensus 768 n~~~a~~lmakALQ 781 (913)
T KOG0495|consen 768 NKEQAELLMAKALQ 781 (913)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999988777654
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.77 E-value=0.00024 Score=68.73 Aligned_cols=131 Identities=15% Similarity=0.206 Sum_probs=79.9
Q ss_pred CCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH
Q 011378 307 SPNYISY--GILINGYCSMGHVTEAFRLWYEMVGKGIKPTLV-SCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISY 383 (487)
Q Consensus 307 ~p~~~t~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 383 (487)
+|+...| -.++..+-..|+++.|....+.-+.+ +|+.. -|..=-+.+...|++++|..++++..+... ||...-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHH
Confidence 4444433 34666777888888888887766533 55543 344444667788888888888887765432 555554
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCC-----CHh-hHHHH--HHHHHhcCChHHHHHHHHH
Q 011378 384 NTLINGFVREENMDKAFALVSKMENQGLVP-----DVI-TYNVI--LTGFCRQGRMHDSELILWR 440 (487)
Q Consensus 384 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~-~~~~l--i~~~~~~g~~~~a~~~~~~ 440 (487)
+--.....++.+.++|.++.......|... ++. .|=.+ -.+|.++|++.+|.+=|..
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 455556677888888888888777665310 011 11111 1366677777666544333
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.72 E-value=0.00032 Score=67.85 Aligned_cols=420 Identities=18% Similarity=0.173 Sum_probs=260.8
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHH
Q 011378 40 YCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEA 119 (487)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 119 (487)
+...|+.++|......-.... .-+.+.|..+--.+-...++++|.+.+......+ +-|...|-.+--.-++.++++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 456788999998876544322 2345667765555555778999999999877644 23566777766666777888888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHH------HHhcCCHHHHHHH
Q 011378 120 EEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAG-LVPDNVLYTIIING------YCRNGFVLEALKM 192 (487)
Q Consensus 120 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~------~~~~~~~~~a~~~ 192 (487)
...-.++.+... -.-..|..+..++--.|+...|..+.++..+.. -.|+...|.-.... ..+.|..++|++.
T Consensus 129 ~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 877777765421 134567788888888999999999999998754 35666655544433 3456777777666
Q ss_pred HHHHHHcCCcCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHHHHH-HHHHHHHHC
Q 011378 193 RDEMLEKGCVMDVVTY-NTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLI-HGHCKDGNMNKAL-NLFDIMTQK 269 (487)
Q Consensus 193 ~~~m~~~g~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li-~~~~~~g~~~~a~-~~~~~m~~~ 269 (487)
+..-+.. ..|-..+ .+--..+.+.+++++|..++..+..++ ||-.-|.-.+ .++++-.+.-+++ .+|....+.
T Consensus 208 L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 208 LLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 5443221 1222222 233456778899999999999998764 6666555544 4444343433333 666655442
Q ss_pred ---CCCCCeeehHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----hCC-
Q 011378 270 ---SIKPDIVTYNTLIDGFCKVGEM-EKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMV----GKG- 340 (487)
Q Consensus 270 ---~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~----~~~- 340 (487)
...|-....+. .....+ +...++++.+.+.|+++- +..+..-|-.....+-..++.-.+. ..|
T Consensus 284 y~r~e~p~Rlplsv-----l~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~ 355 (700)
T KOG1156|consen 284 YPRHECPRRLPLSV-----LNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGM 355 (700)
T ss_pred CcccccchhccHHH-----hCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccC
Confidence 22222111111 111233 334555666667776653 3333333322222221122222221 111
Q ss_pred ---------CCCChhhHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 341 ---------IKPTLVSCN--TIIKGYCRSGDASKADEFLSKMVSEGVDPDSI-SYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 341 ---------~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
-+|....|+ -+.+.|-+.|+++.|...++..+. ..|+.+ .|-.=-..+.+.|+++.|...+++-.+
T Consensus 356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 144544444 477889999999999999998774 456643 444444667889999999999998876
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHH------HHHHHhcCCHHHHHHHHHHHH
Q 011378 409 QGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLN--PDRSTYTTL------INGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 409 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~ty~~l------~~~~~~~~~~~~a~~~~~~m~ 477 (487)
.. .||+..-+--.....++.+.++|++++......|.. -+..--.+| -.+|.+.|++..|++=++...
T Consensus 434 lD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 434 LD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred cc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 54 467766556677778999999999999888877651 122111111 357888888888887766654
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=0.00019 Score=64.23 Aligned_cols=188 Identities=14% Similarity=0.121 Sum_probs=108.1
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-----HHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHh
Q 011378 284 GFCKVGEMEKANKLWADMISRKISPNYISYGILING-----YCSMGHVTEAFRLWYEMVGKGIKPTLV-SCNTIIKGYCR 357 (487)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~-----~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~ 357 (487)
-|.+.+++.+|..+.++.. ...|-....-.++.+ .....++..|.+.|...-.++.+.|.. --.++-+.+.-
T Consensus 294 YyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred eecccccHHHHHHHHhhcC--CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 3677778888877776542 112222222222111 112234666777776665666554432 23344555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH-HHHhcCChHHHHH
Q 011378 358 SGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILT-GFCRQGRMHDSEL 436 (487)
Q Consensus 358 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~a~~ 436 (487)
..++++..-.++...+-=..-|.+.|| +..+++..|++.+|+++|-......++ |..+|.+++. .|.++|+.+.|+.
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHH
Confidence 566777766666666544445555554 567788888888888888766544433 4456655554 5678888888877
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 437 ILWRMIEKGLNPDRS-TYTTLINGHVSQNNLKEAFRFHDEMLQ 478 (487)
Q Consensus 437 ~~~~m~~~g~~p~~~-ty~~l~~~~~~~~~~~~a~~~~~~m~~ 478 (487)
++-++-. ..++- ....+-+-|-..+.+--|-+-|.++..
T Consensus 450 ~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 450 MMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 6655422 11222 233334556667777777777777653
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=0.00027 Score=66.10 Aligned_cols=216 Identities=15% Similarity=0.152 Sum_probs=145.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHH
Q 011378 251 CKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRK-ISPNYISYGILINGYCSMGHVTEA 329 (487)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~t~~~li~~~~~~~~~~~a 329 (487)
.-.|+...|..-|+...+....++. .|--+-..|....+.++..+.|.+..+-. -.|| +|.-=-....-.+++++|
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--vYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--VYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc--hhHhHHHHHHHHHHHHHH
Confidence 3456777777777766654333322 25556667888888888888888765432 2233 444434444556778888
Q ss_pred HHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 330 FRLWYEMVGKGIKPT-LVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 330 ~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
..-|+.-+. +.|+ +..|--+--+.-|.+.++++...|++.++ .++--+..|+..-..+.-.+++++|.+.++.-.+
T Consensus 414 ~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 888877653 3342 33444444444578899999999999876 4555567888888999999999999999987764
Q ss_pred CCCCCC---------HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 409 QGLVPD---------VITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 409 ~g~~p~---------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
. .|+ +...-.++..- =.+++..|.+++.+..+. .|. ...|..|-..-+++|+.++|+++|++-.
T Consensus 491 L--E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 L--EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred h--ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 333 22222232222 338889999988887553 443 4589999999999999999999998753
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.63 E-value=0.00042 Score=66.13 Aligned_cols=57 Identities=11% Similarity=-0.041 Sum_probs=27.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCC-------C-CHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 386 LINGFVREENMDKAFALVSKMENQGLV-------P-DVITYNVILTGFCRQGRMHDSELILWRMI 442 (487)
Q Consensus 386 li~~~~~~~~~~~a~~~~~~m~~~g~~-------p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 442 (487)
...+++..|+.+.|..+++.+....-. . .+..--...-++.+.|+.++|..++....
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555666666666666665432111 0 01111111123346666666666666544
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.61 E-value=0.00071 Score=65.49 Aligned_cols=219 Identities=11% Similarity=0.167 Sum_probs=121.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC------eeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhc
Q 011378 253 DGNMNKALNLFDIMTQKSIKPD------IVTYNTLIDGFCKVGEMEKANKLWADMISRKISPN---YISYGILINGYCSM 323 (487)
Q Consensus 253 ~g~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~t~~~li~~~~~~ 323 (487)
.|+..+-..+|.+..+. +.|- ...|..+-+.|-..|+++.|..+|.+...-..+.- ..+|..-...=.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45556666666555432 2221 12466677777777888888888776554322111 12333333333455
Q ss_pred CCHHHHHHHHHHHHh-----------CCC------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh--hHH
Q 011378 324 GHVTEAFRLWYEMVG-----------KGI------KPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSI--SYN 384 (487)
Q Consensus 324 ~~~~~a~~~~~~m~~-----------~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~ 384 (487)
.+++.|+++.+.-.. .+. ..+...|...++---..|-++....+++.+++..+..... .|.
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA 518 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA 518 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 566677766654321 111 1223456566666666788888888888888776543222 333
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHH--H
Q 011378 385 TLINGFVREENMDKAFALVSKMENQGLVPDV-ITYNVILTGFCR---QGRMHDSELILWRMIEKGLNPDRSTYTTLI--N 458 (487)
Q Consensus 385 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~--~ 458 (487)
.++. ....++++.+.+++-...---|++ ..||..+..|.+ .-+++.|+.+|++.++ |..|...-+--|+ .
T Consensus 519 mfLE---eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~ 594 (835)
T KOG2047|consen 519 MFLE---EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAK 594 (835)
T ss_pred HHHH---hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 3332 233466777666643222112444 346666665543 3367888889998887 6656544333232 2
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 011378 459 GHVSQNNLKEAFRFHDEM 476 (487)
Q Consensus 459 ~~~~~~~~~~a~~~~~~m 476 (487)
.--+.|....|++++++-
T Consensus 595 lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 595 LEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 223457788888888873
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=7.6e-06 Score=72.17 Aligned_cols=234 Identities=15% Similarity=0.043 Sum_probs=163.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeee-hHHH
Q 011378 203 MDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVT-YNTL 281 (487)
Q Consensus 203 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~l 281 (487)
.|+.--+-+-.+|.+.|.+.+|++.|+...+. .|-+.||..|-.+|.+-..+..|+.+|..-... .|-.+| ..-+
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ 296 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQ 296 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhh
Confidence 34444466778888999999999988887765 455668888888899999999998888765432 233333 3445
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 011378 282 IDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDA 361 (487)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 361 (487)
.+.+-..++.++|.++++...+.. +.++....++-.+|.-.++.+-|++.++.+.+.|+. +...|+.+--+|.-.+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 556666778888888888766542 345666666777777778888888888888888854 445566666666677888
Q ss_pred HHHHHHHHHHHHCCCCCChh--hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 011378 362 SKADEFLSKMVSEGVDPDSI--SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILW 439 (487)
Q Consensus 362 ~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 439 (487)
+.+...|+.....-..|+.. +|-.|-...+..|++..|.+.|.--.... .-....+|.|...-.+.|++++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 88888877766554444432 45555555667788888888876554322 2234678888888888888888888887
Q ss_pred HHHH
Q 011378 440 RMIE 443 (487)
Q Consensus 440 ~m~~ 443 (487)
....
T Consensus 454 ~A~s 457 (478)
T KOG1129|consen 454 AAKS 457 (478)
T ss_pred Hhhh
Confidence 7644
No 74
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.59 E-value=0.00031 Score=68.82 Aligned_cols=193 Identities=18% Similarity=0.251 Sum_probs=134.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 011378 247 IHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHV 326 (487)
Q Consensus 247 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~ 326 (487)
|.+......+.+|+.+++.+...... ..-|.-+.+.|+..|+++.|+++|.+- ..++--|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 34455566777888888776654332 235777889999999999999999753 2456778899999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 011378 327 TEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKM 406 (487)
Q Consensus 327 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 406 (487)
.+|+++-.+. .|-+..+..|-+--.-+-..|++.+|++++-... .||.. |..|-+.|..++..++.++-
T Consensus 808 ~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~a-----iqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDKA-----IQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchHH-----HHHHHhhCcchHHHHHHHHh
Confidence 9999987665 4445555666666666777888888888775433 26643 77888999999888887764
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011378 407 ENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFH 473 (487)
Q Consensus 407 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~ 473 (487)
....+ ..|...+..-+-..|++..|+.-|-+.. -|..-+++|-.++.|++|.++-
T Consensus 877 h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 877 HGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred Chhhh---hHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 32211 2345556667777888888886665432 3456677777777787777764
No 75
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.59 E-value=2.6e-06 Score=77.52 Aligned_cols=222 Identities=17% Similarity=0.200 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHH-HHH
Q 011378 241 YTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGIL-ING 319 (487)
Q Consensus 241 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l-i~~ 319 (487)
....-+.+++...|..+.++. ..... -.|.......+...+....+-+.+..-+.+.......++-.++..+ -..
T Consensus 36 e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i 111 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATI 111 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 344455566666666554432 22222 2444444434433333323344444433333222222222222222 223
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCC
Q 011378 320 YCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVR----EEN 395 (487)
Q Consensus 320 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~ 395 (487)
+...|++++|++++.. + .+.......+..|.+.++.+.|.+.++.|.+. ..|. +-..|..+|+. .++
T Consensus 112 ~~~~~~~~~AL~~l~~----~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHK----G--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTT----T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHc----c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchh
Confidence 4445777777776542 1 34555556677777777777777777777643 2332 33334444432 235
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH-HHHHHHH
Q 011378 396 MDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQNNL-KEAFRFH 473 (487)
Q Consensus 396 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~l~~~~~~~~~~-~~a~~~~ 473 (487)
+.+|..+|+++.+. ..+++.+.|.+..++...|++++|+.++.+.... .| +..|...++-.....|+. +.+.+++
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 77777777776553 4566777777777777777777777777775432 23 334555566666666665 5566666
Q ss_pred HHHHH
Q 011378 474 DEMLQ 478 (487)
Q Consensus 474 ~~m~~ 478 (487)
+++.+
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 66653
No 76
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.57 E-value=0.0011 Score=71.89 Aligned_cols=336 Identities=10% Similarity=0.039 Sum_probs=202.2
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC------CCChh--hHHHHHHHHH
Q 011378 110 SCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGL------VPDNV--LYTIIINGYC 181 (487)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------~~~~~--~~~~ll~~~~ 181 (487)
....|+++.+...++.+.......+..........+...|+++++..++......-- .+... ....+-..+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 334567777766666553221111222223344555678899999988887654210 11111 1122223455
Q ss_pred hcCCHHHHHHHHHHHHHcCCcCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHh
Q 011378 182 RNGFVLEALKMRDEMLEKGCVMDV----VTYNTILNGLCRAKMLTEADDLFNEMLER----GV-FPDFYTFTTLIHGHCK 252 (487)
Q Consensus 182 ~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~t~~~li~~~~~ 252 (487)
..|+++++...+++..+.--..+. ...+.+...+...|+++.|...+.+.... |- .+...++..+-..+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 788999999988877653111121 23455666677899999999999887642 11 1112345566677888
Q ss_pred cCCHHHHHHHHHHHHH----CCCCC---CeeehHHHHHHHHccCCHHHHHHHHHHHHhC--CCCC--ChhhHHHHHHHHH
Q 011378 253 DGNMNKALNLFDIMTQ----KSIKP---DIVTYNTLIDGFCKVGEMEKANKLWADMISR--KISP--NYISYGILINGYC 321 (487)
Q Consensus 253 ~g~~~~a~~~~~~m~~----~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p--~~~t~~~li~~~~ 321 (487)
.|+++.|...++.... .+... ....+..+-..+...|++++|...+.+.... ...+ ....+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999998876543 22211 1122344455667779999999888876432 1112 2334455666778
Q ss_pred hcCCHHHHHHHHHHHHhC--CCCCChh--hH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHhc
Q 011378 322 SMGHVTEAFRLWYEMVGK--GIKPTLV--SC--NTIIKGYCRSGDASKADEFLSKMVSEGVDPDS---ISYNTLINGFVR 392 (487)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~--~~~~~~~--~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~ 392 (487)
..|+.++|...+...... ....... .. ...+..+...|+.+.|.+.+............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 899999999988876432 1111111 10 11224445678999998888765432211111 113456677888
Q ss_pred cCCHHHHHHHHHHHHh----CCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011378 393 EENMDKAFALVSKMEN----QGLVPD-VITYNVILTGFCRQGRMHDSELILWRMIEKG 445 (487)
Q Consensus 393 ~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 445 (487)
.|+.++|...+++... .|..++ ..+...+-.++.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999998887643 243332 2456666778889999999999999987543
No 77
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.56 E-value=0.00097 Score=64.60 Aligned_cols=452 Identities=13% Similarity=0.133 Sum_probs=262.2
Q ss_pred hhhHHhcCChhhHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCChhHHH---HHHHHHhhCCCCCCc--cchHH
Q 011378 2 VNALCKDHKIDSAKMFLCEMEQKG------VYPDTVTYNTLINAYCREGFLEEAF---QLMNSMSGKGLKPGV--FTYNS 70 (487)
Q Consensus 2 i~~~~~~~~~~~a~~~~~~~~~~g------~~p~~~~~~~ll~~~~~~~~~~~a~---~~~~~m~~~~~~p~~--~~~~~ 70 (487)
|..+++.++.+.|.+.++.+.... -+.+--.|+.+-...++.-+.-..+ .++..+. +.-+|. ..|++
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi--~rftDq~g~Lw~S 253 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI--RRFTDQLGFLWCS 253 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc--ccCcHHHHHHHHH
Confidence 567889999999999888765431 2334455666655555554433322 2333332 223453 56899
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----------------C------ChhHHHHHHHHHHH
Q 011378 71 LINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRK----------------E------NMSEAEEIFCEMSR 128 (487)
Q Consensus 71 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~----------------~------~~~~a~~~~~~m~~ 128 (487)
|-+-|.+.|.++.|..++++-.+.- .+..-|+.+...|+.. + +++....-|+.+.+
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 9999999999999999999876542 2333334444333322 1 12222233444333
Q ss_pred CCC-----------CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC------hhhHHHHHHHHHhcCCHHHHHH
Q 011378 129 RGV-----------APDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD------NVLYTIIINGYCRNGFVLEALK 191 (487)
Q Consensus 129 ~g~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~------~~~~~~ll~~~~~~~~~~~a~~ 191 (487)
++- .-++.+|..-+.. ..|+..+....|.+..+. +.|. ...|..+-+.|-++|+++.|..
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 210 1122333333222 245566666677666542 2332 2368888888999999999999
Q ss_pred HHHHHHHcCCcCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----------CCCC-------CHHHHHHHHHHHH
Q 011378 192 MRDEMLEKGCVMD---VVTYNTILNGLCRAKMLTEADDLFNEMLER----------GVFP-------DFYTFTTLIHGHC 251 (487)
Q Consensus 192 ~~~~m~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----------~~~~-------~~~t~~~li~~~~ 251 (487)
+|++-.+..++-= ..+|.....+=.+..+++.|.++.+....- |-.| +...|+-.++.--
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 9998776544321 234555555556677788888877665421 1111 2234555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCCee-ehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHh---cCC
Q 011378 252 KDGNMNKALNLFDIMTQKSI-KPDIV-TYNTLIDGFCKVGEMEKANKLWADMISRKISPNY-ISYGILINGYCS---MGH 325 (487)
Q Consensus 252 ~~g~~~~a~~~~~~m~~~~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~t~~~li~~~~~---~~~ 325 (487)
..|-++....+++.+..-.+ .|.+. -|..++ -.+.-++++.++++.-..-.-.|++ ..|+.-+.-+.+ ...
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfL---Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFL---EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 56777777777777765433 33322 122222 2344578888888764444445665 356666666654 236
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhccCCHHHHHH
Q 011378 326 VTEAFRLWYEMVGKGIKPTLVSCNTIIKGY--CRSGDASKADEFLSKMVSEGVDPD--SISYNTLINGFVREENMDKAFA 401 (487)
Q Consensus 326 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~ 401 (487)
++.|..+|++-.+ |.+|...-+--|+-+= -+-|-...|..+++... .++++. ...||+.|.--+..--+.....
T Consensus 566 lEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat-~~v~~a~~l~myni~I~kaae~yGv~~TR~ 643 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT-SAVKEAQRLDMYNIYIKKAAEIYGVPRTRE 643 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHhCCcccHH
Confidence 8899999998887 6666544332232221 13477778888888744 355554 3478888876655444444555
Q ss_pred HHHHHHhCCCCCCHhhHHHH---HHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHH
Q 011378 402 LVSKMENQGLVPDVITYNVI---LTGFCRQGRMHDSELILWRMIEK-GLNPDRSTYTTLINGHVSQNNLK 467 (487)
Q Consensus 402 ~~~~m~~~g~~p~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~ty~~l~~~~~~~~~~~ 467 (487)
++++..+. -||...-.-. .+.=++-|.++.|+.++..-.+. +-+-+..-|.+.=.--+++|+-+
T Consensus 644 iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 644 IYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 55555443 3554432222 23447789999998888775432 22334456777777777777733
No 78
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=0.00087 Score=66.65 Aligned_cols=239 Identities=16% Similarity=0.178 Sum_probs=139.2
Q ss_pred ChhhHHHHHHH--HHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCC-C--------C
Q 011378 29 DTVTYNTLINA--YCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMG-L--------S 97 (487)
Q Consensus 29 ~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~--------~ 97 (487)
|..|--.+++- |.-.|+.+.|++-.+.+++ -.+|..+-+.|.+..+.|-|.-.+-.|.+.. . .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 33444444432 4556778888777766653 4578888888888888887777776666432 0 1
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 011378 98 PDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIII 177 (487)
Q Consensus 98 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 177 (487)
|+ .+=..+-......|.+++|+.++.+-++ |..+=..|-..|.|++|+++-+.=....+. .||-.-.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHH
Confidence 21 2222233334466888888888887765 334555667788888888876643222222 2444444
Q ss_pred HHHHhcCCHHHHHHHHHHH----------HHcC---------CcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011378 178 NGYCRNGFVLEALKMRDEM----------LEKG---------CVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFP 238 (487)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~m----------~~~g---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 238 (487)
.-+-..++.+.|++.+++- .... -.-|...|.-.-...-..|+.+.|..+|...++
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 4444566677776665532 1110 012333344444444556777777777766543
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHH
Q 011378 239 DFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADM 301 (487)
Q Consensus 239 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 301 (487)
|-+++...|-.|+.++|-++-++- -|....-.|-+.|-..|++.+|...|...
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445555556666666666554432 14445556777777777777777777654
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=0.00088 Score=60.19 Aligned_cols=418 Identities=11% Similarity=0.118 Sum_probs=229.4
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHH
Q 011378 6 CKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAK 85 (487)
Q Consensus 6 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 85 (487)
...+++..|..+++--...+-+-...+--=+...+-+.|++++|...+..+.++. .|+...+..|--...-.|.+.+|.
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHH
Confidence 3456667777776655443322221121223444556778888887777665533 344444544443334456666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH-HHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 011378 86 EVLDEMLQMGLSPDTATYNTLLVE-SCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSA 164 (487)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 164 (487)
.+-+.. |+....+-|+-. .-+.++-++...+.+.+.+. ...--+|.....-.-.+.+|.+++......
T Consensus 112 ~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 112 SIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 655542 333333333333 33445555555444444321 111123333333333456677777666543
Q ss_pred CCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCcCChh-hHHHHHHHHHhc--C---------------------
Q 011378 165 GLVPDNVLYTIII-NGYCRNGFVLEALKMRDEMLEKGCVMDVV-TYNTILNGLCRA--K--------------------- 219 (487)
Q Consensus 165 g~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~--~--------------------- 219 (487)
+ |+....|.-+ -.|.+....+-+.+++....+. .||.. .-|.......+. |
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 2 3322233222 2345555555555555544432 13322 122222111111 1
Q ss_pred ------------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHH--
Q 011378 220 ------------MLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGF-- 285 (487)
Q Consensus 220 ------------~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-- 285 (487)
+-+.|.+++-.+.+ + =+..--.++--|.+.+++++|..+.+.+. |.. -|.-++++.
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~--~--IPEARlNL~iYyL~q~dVqeA~~L~Kdl~-----Ptt-P~EyilKgvv~ 326 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMK--H--IPEARLNLIIYYLNQNDVQEAISLCKDLD-----PTT-PYEYILKGVVF 326 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHh--h--ChHhhhhheeeecccccHHHHHHHHhhcC-----CCC-hHHHHHHHHHH
Confidence 11222222222211 0 11233345556889999999988765442 322 122333332
Q ss_pred Hcc-------CCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011378 286 CKV-------GEMEKANKLWADMISRKISPNYI-SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCR 357 (487)
Q Consensus 286 ~~~-------g~~~~a~~~~~~m~~~~~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 357 (487)
... ..+.-|.+.|.-.-.++..-|.. ---++.+.+.-..++++++...+.+...-..-|.+.|| +-++++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHH
Confidence 222 23556777776554444432322 12345566666778999999888887766666666664 7789999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCChHHHHH
Q 011378 358 SGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVIT-YNVILTGFCRQGRMHDSEL 436 (487)
Q Consensus 358 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~ 436 (487)
.|+..+|+++|-......++-+..-.+.|..+|.+.++.+.|++++-++... .+..+ ...+..-|.+.+.+--|.+
T Consensus 406 tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAK 482 (557)
T ss_pred hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987766555544444455668889999999999988776532 24444 3445568889999999999
Q ss_pred HHHHHHHcCCCCCHHHHHH
Q 011378 437 ILWRMIEKGLNPDRSTYTT 455 (487)
Q Consensus 437 ~~~~m~~~g~~p~~~ty~~ 455 (487)
.|+.+.. +.|++..|+.
T Consensus 483 AFd~lE~--lDP~pEnWeG 499 (557)
T KOG3785|consen 483 AFDELEI--LDPTPENWEG 499 (557)
T ss_pred hhhHHHc--cCCCccccCC
Confidence 9998754 4677777754
No 80
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.48 E-value=0.004 Score=67.56 Aligned_cols=335 Identities=14% Similarity=0.044 Sum_probs=202.5
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------cCChh--hHHHHHHHHH
Q 011378 145 FSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGC------VMDVV--TYNTILNGLC 216 (487)
Q Consensus 145 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~------~~~~~--~~~~li~~~~ 216 (487)
....|+++.+..+++.+.......+..........+...|+.+++...+....+.-- .+... ....+-..+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666665542211111222223344455677899998888877654211 11111 1122224456
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCeeehHHHHHHHHc
Q 011378 217 RAKMLTEADDLFNEMLERGVFPDF----YTFTTLIHGHCKDGNMNKALNLFDIMTQKSIK-----PDIVTYNTLIDGFCK 287 (487)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~~~~~~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~ 287 (487)
..|+++.|...+++..+.--..+. ...+.+-..+...|+++.|...++......-. +...++..+-..+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999987653111121 23455666678899999999998876532111 112344556667788
Q ss_pred cCCHHHHHHHHHHHHh----CCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--hhhHHHHHHHHH
Q 011378 288 VGEMEKANKLWADMIS----RKIS--P-NYISYGILINGYCSMGHVTEAFRLWYEMVGK--GIKPT--LVSCNTIIKGYC 356 (487)
Q Consensus 288 ~g~~~~a~~~~~~m~~----~~~~--p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~--~~~~~~li~~~~ 356 (487)
.|+++.|...+.+... .+.. | ....+..+...+...|++++|...+.+.... ...+. ...+..+-..+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999998877553 2221 1 2233445556677789999999988876432 11122 234444566777
Q ss_pred hcCChHHHHHHHHHHHHC----CCCCChhh--HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHh
Q 011378 357 RSGDASKADEFLSKMVSE----GVDPDSIS--YNTLINGFVREENMDKAFALVSKMENQGLVPD---VITYNVILTGFCR 427 (487)
Q Consensus 357 ~~~~~~~a~~~~~~m~~~----g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~ 427 (487)
..|+.+.|.+.++..... +..+.... -...+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 899999999988887532 11111101 11123445568899999998776543211111 1113456677889
Q ss_pred cCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011378 428 QGRMHDSELILWRMIEK----GLNPDR-STYTTLINGHVSQNNLKEAFRFHDEMLQR 479 (487)
Q Consensus 428 ~g~~~~a~~~~~~m~~~----g~~p~~-~ty~~l~~~~~~~~~~~~a~~~~~~m~~~ 479 (487)
.|+.++|...+.+.... |..++. .+...+-.++...|+.++|...+.+-.+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999987643 333322 35555667888999999999998888753
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.0016 Score=62.46 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=96.4
Q ss_pred hHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHH--------HHHHCCCCCChh
Q 011378 312 SYGILINGYCSM--GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLS--------KMVSEGVDPDSI 381 (487)
Q Consensus 312 t~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~g~~p~~~ 381 (487)
.+.+++..+.+. ....++..++.......-.-...+.-.+++.....|+++.|.+++. ...+.+..|..
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~- 419 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT- 419 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH-
Confidence 344444444322 2355666666655443222234455566777788888888888888 55555555544
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCCHhh----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 011378 382 SYNTLINGFVREENMDKAFALVSKMENQ--GLVPDVIT----YNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTT 455 (487)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ 455 (487)
...++..|.+.++-+.|..++++-... .-.+.... +.-+...--+.|..++|..+++++... -.+|..+...
T Consensus 420 -V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~ 497 (652)
T KOG2376|consen 420 -VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQ 497 (652)
T ss_pred -HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHH
Confidence 455667777777777788887654321 11222222 333334445778888888888888763 2356778888
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 011378 456 LINGHVSQNNLKEAFRFHD 474 (487)
Q Consensus 456 l~~~~~~~~~~~~a~~~~~ 474 (487)
++.+|++. +++.|..+-.
T Consensus 498 lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 498 LVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHhc-CHHHHHHHhh
Confidence 88888865 4666665533
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=1.7e-05 Score=70.06 Aligned_cols=228 Identities=15% Similarity=0.066 Sum_probs=145.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHH-HHHHHHHHc
Q 011378 34 NTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATY-NTLLVESCR 112 (487)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~-~~ll~~~~~ 112 (487)
+.+-+.|.+.|-+.+|...+++-.+. .|-+.||-.|-++|.+..++..|+.++.+-.+. .|-.+|| .-.-+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 45667777777777777777665443 244456666677777777777777777765542 3444443 233444555
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011378 113 KENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKM 192 (487)
Q Consensus 113 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 192 (487)
.++.++|.+++....+.. .-++....++...|.-.++++.|+.+++.+.+.|+.. ...|+.+--.|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s-peLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS-PELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC-hHHHhhHHHHHHhhcchhhhHHH
Confidence 677777777777665432 2244444555666677777788888888777777543 34555555555566666666666
Q ss_pred HHHHHHcCCcCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 193 RDEMLEKGCVMDV--VTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQ 268 (487)
Q Consensus 193 ~~~m~~~g~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (487)
|......--.|+. ..|-.+-....-.|++..|.+.|+-...++ .-+...+++|--.-.+.|+++.|..++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 6655543332322 235455555566788888888888766543 23567788888888888888888888876554
No 83
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.42 E-value=2.3e-05 Score=71.43 Aligned_cols=223 Identities=16% Similarity=0.131 Sum_probs=136.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH-HH
Q 011378 31 VTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLL-VE 109 (487)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll-~~ 109 (487)
...-.+.+++...|..+.++ .++.... .|.......+-..+...++-+.+..-+++.......++..++..+. ..
T Consensus 36 e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i 111 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATI 111 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 34456777888888776544 4443333 5665555444444433344444444444333333332233333222 34
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCC
Q 011378 110 SCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCR----NGF 185 (487)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~ 185 (487)
+...|++++|++++..- .+.......+..+.+.+++|.|.+.++.|++. ..|. +...+..++.. ...
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchh
Confidence 56678999998887542 35666677888999999999999999999864 3443 33344444433 336
Q ss_pred HHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 011378 186 VLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNM-NKALNLFD 264 (487)
Q Consensus 186 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~-~~a~~~~~ 264 (487)
+.+|..+|+++.+ .+.+++.+.|.+..++...|++++|++++.+..+.+ +-|+.+..+++......|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 8888889988754 456778888888888888999999998888876543 33667777788777777776 56667777
Q ss_pred HHHH
Q 011378 265 IMTQ 268 (487)
Q Consensus 265 ~m~~ 268 (487)
.++.
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 6664
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=0.00026 Score=62.01 Aligned_cols=337 Identities=13% Similarity=0.138 Sum_probs=215.2
Q ss_pred CCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHH
Q 011378 59 KGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSF 138 (487)
Q Consensus 59 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 138 (487)
.|+....--+++++..+.+..++..|.+++....+.. +.+....+.|-.+|-+..++..|...++++... -|...-|
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qY 80 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQY 80 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHH
Confidence 4554444557888888899999999999988765542 236777778888888999999999999998764 4555555
Q ss_pred HH-HHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHH
Q 011378 139 ST-LIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGY--CRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGL 215 (487)
Q Consensus 139 ~~-li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 215 (487)
.. -.....+++.+..|+.+...|... |+...-..-+++- ...+++..+..++++.-..| +..+.+..-...
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCll 154 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLL 154 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchhee
Confidence 43 345667888999999998888653 3333222223332 24567777777777764322 223333444445
Q ss_pred HhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------Ceee----
Q 011378 216 CRAKMLTEADDLFNEMLER-GVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKP-------------DIVT---- 277 (487)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~-~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-------------~~~~---- 277 (487)
.+.|+++.|.+-|+...+- |..| ...||..+. ..+.|+.+.|++...+..++|++- |+..
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 6889999999999998774 4444 456776664 456789999999999888887652 2211
Q ss_pred ----hHHHHHH-------HHccCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 011378 278 ----YNTLIDG-------FCKVGEMEKANKLWADMISR-KISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTL 345 (487)
Q Consensus 278 ----~~~li~~-------~~~~g~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 345 (487)
-+.++.+ +.+.|+.+.|.+-+.+|.-+ ....|.+|...+.-.=. .+++.+..+-+.-+.... +-..
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ 310 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPP 310 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCCh
Confidence 1344444 34567888888888777533 33456677665543222 234444444444443331 2345
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 346 VSCNTIIKGYCRSGDASKADEFLSKMVSEGVD-PDSISYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 346 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
.||..++-.||+..-++.|..++.+-...-.+ .+...|+.|=..-......++|.+-++.+.+
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 67888888899888888888888754332211 2344455433333345567777776666554
No 85
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.0033 Score=64.15 Aligned_cols=319 Identities=15% Similarity=0.179 Sum_probs=167.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 011378 29 DTVTYNTLINAYCREGFLEEAFQLMNSMSGK--GLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTL 106 (487)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 106 (487)
|+.-.+..++++...+-..+-.++++.+.-. .+.-+...-|.||-.. -.-+...+.++.+++.+.. .|+..
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdnyD-a~~ia----- 1055 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDNYD-APDIA----- 1055 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhccCC-chhHH-----
Confidence 4455666677777777777777777766432 1111111222233222 2335556666666665432 23322
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 011378 107 LVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFV 186 (487)
Q Consensus 107 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 186 (487)
..+...+-.++|..+|+..- .+....+.||. ..+.+|+|.++-+... ....|+.+-.+--+.|.+
T Consensus 1056 -~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1056 -EIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred -HHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 22334455667776666542 12322333332 3456666666555432 234677777777777777
Q ss_pred HHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 187 LEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIM 266 (487)
Q Consensus 187 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 266 (487)
.+|.+-+-+. -|+..|..+++...+.|.+++..+.+...+++.-.|... +.+|-+|++.+++.+-++.+
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---
Confidence 7776555332 355567777777777777777777776555554444433 35666777777766654433
Q ss_pred HHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 011378 267 TQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLV 346 (487)
Q Consensus 267 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 346 (487)
..||......+=+-|...|.++.|.-++. ++.-|.-|...+...|.++-|.+--+. ..+..
T Consensus 1190 ----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRK------Ans~k 1250 (1666)
T KOG0985|consen 1190 ----AGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARK------ANSTK 1250 (1666)
T ss_pred ----cCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhh------ccchh
Confidence 13555555555555566666666655554 344555666666666665555443221 12344
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 011378 347 SCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVS 404 (487)
Q Consensus 347 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 404 (487)
||.-.--+|...+.+..| .|-..++.....-..-|+..|-..|.+++...+++
T Consensus 1251 tWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 555555555444433332 22222232333334455555655666555444443
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.41 E-value=0.0022 Score=61.25 Aligned_cols=195 Identities=10% Similarity=-0.035 Sum_probs=102.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCccchHH-HHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHHHHH---H
Q 011378 33 YNTLINAYCREGFLEEAFQLMNSMSGK-GLKPGVFTYNS-LINGLCKKGRCDRAKEVLDEMLQMGLSPD-TATYNT---L 106 (487)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~---l 106 (487)
|..+...+...++.+.+.+.+...... ...++...-.. -...+...|++++|.+.+++..+. .|+ ...+.. .
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~ 86 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHH
Confidence 444444455566666655555443322 11122111111 112345577888888888876654 233 333331 1
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 011378 107 LVESCRKENMSEAEEIFCEMSRRGVAPDI-VSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGF 185 (487)
Q Consensus 107 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 185 (487)
.......+....+.+.++. ..+..|+. .....+...+...|++++|...+++..+.. +.+...+..+-..+...|+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 1111223444455554443 11222332 233344456677888888888888776643 2224456666667777777
Q ss_pred HHHHHHHHHHHHHcCC-cCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 186 VLEALKMRDEMLEKGC-VMDV--VTYNTILNGLCRAKMLTEADDLFNEML 232 (487)
Q Consensus 186 ~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~ 232 (487)
.++|...+++..+..- .++. ..|..+...+...|++++|.+++++..
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777777776654321 1222 234456666777777777777777764
No 87
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.38 E-value=7e-07 Score=52.71 Aligned_cols=33 Identities=45% Similarity=0.797 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011378 452 TYTTLINGHVSQNNLKEAFRFHDEMLQRGFVPD 484 (487)
Q Consensus 452 ty~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 484 (487)
||+.+|.+|++.|++++|.+++++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666666665
No 88
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=0.002 Score=61.64 Aligned_cols=287 Identities=14% Similarity=0.117 Sum_probs=193.7
Q ss_pred CCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHH
Q 011378 60 GLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFS 139 (487)
Q Consensus 60 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 139 (487)
++.-++.....--+-|...+++.++.++.+...+.. ++....+..=|.++...|+-.+-..+=.+|.+. .+-...+|=
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchh
Confidence 344455555555666777888888888888776542 455556666666777777777766666666654 233556777
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH--cC-CcCChhhHHHHHHHH
Q 011378 140 TLIGIFSRNGQLDRALMYFREMKSAGLVPD-NVLYTIIINGYCRNGFVLEALKMRDEMLE--KG-CVMDVVTYNTILNGL 215 (487)
Q Consensus 140 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~g-~~~~~~~~~~li~~~ 215 (487)
++---|.-.|..++|.++|.+... +.|. ...|-.+-.+|+-.|.-++|...+...-+ .| ..|. .| +---|
T Consensus 317 aVg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LY--lgmey 390 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LY--LGMEY 390 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HH--HHHHH
Confidence 777777777888888888887654 3333 34677777788888888877766554332 12 2232 12 22336
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCC----CeeehHHHHHHHHccC
Q 011378 216 CRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQ--KSIKP----DIVTYNTLIDGFCKVG 289 (487)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~----~~~~~~~li~~~~~~g 289 (487)
.+.++++.|.++|.+.... .+-|+...+-+--.....+.+.+|..+|+.... +.+.+ -..+++.|=..|.+.+
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 6788888899888876643 233667777776667777888888888875542 11111 2235677778888889
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011378 290 EMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRS 358 (487)
Q Consensus 290 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 358 (487)
..++|+..++..... .+-+..+++++--.|...|.++.|.+.|..- ..+.|+-.+...+++.+...
T Consensus 470 ~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKa--L~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKA--LALKPDNIFISELLKLAIED 535 (611)
T ss_pred hHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHH--HhcCCccHHHHHHHHHHHHh
Confidence 999998888876543 2347778888888888889999998888865 45688887777777766543
No 89
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.32 E-value=1.1e-06 Score=51.82 Aligned_cols=33 Identities=36% Similarity=0.924 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011378 417 TYNVILTGFCRQGRMHDSELILWRMIEKGLNPD 449 (487)
Q Consensus 417 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 449 (487)
+||++|.+|++.|++++|.++|++|...|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 90
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.26 E-value=1.8e-06 Score=50.53 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011378 451 STYTTLINGHVSQNNLKEAFRFHDEMLQRGFVP 483 (487)
Q Consensus 451 ~ty~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 483 (487)
.||+.++++|++.|+++.|.+++++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.26 E-value=0.001 Score=61.43 Aligned_cols=217 Identities=13% Similarity=0.022 Sum_probs=120.7
Q ss_pred CChhHHHHHHHHHhhC-CCCCCc--cchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH
Q 011378 44 GFLEEAFQLMNSMSGK-GLKPGV--FTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAE 120 (487)
Q Consensus 44 ~~~~~a~~~~~~m~~~-~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 120 (487)
+..+.++.-+.++... ...|+. ..|..+-..+.+.|+.+.|...|++..+.. +.+...|+.+-..+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3455555555555532 222322 334445555667777777777777766542 224566777777777777777777
Q ss_pred HHHHHHHHCCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011378 121 EIFCEMSRRGVAP-DIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEK 199 (487)
Q Consensus 121 ~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 199 (487)
+.|+...+. .| +..++..+..++...|++++|.+.|+...+. .|+..............++.++|...+.+....
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 777777653 34 3455666666677777777777777776653 343322122222233456677777777554432
Q ss_pred CCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011378 200 GCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLER---GV--FP-DFYTFTTLIHGHCKDGNMNKALNLFDIMTQKS 270 (487)
Q Consensus 200 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~--~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 270 (487)
. .++...| .+.. ...|+...+ +.+..+.+. .. .| ....|..+-..+.+.|+.++|...|+...+..
T Consensus 195 ~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 2222112 2222 223444333 244444321 11 11 23467777777778888888888887766544
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.26 E-value=0.0019 Score=59.70 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 347 SCNTIIKGYCRSGDASKADEFLSKMVS 373 (487)
Q Consensus 347 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (487)
.|..+-..+...|+.++|...|++..+
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555555566666666666665554
No 93
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.24 E-value=2e-06 Score=50.33 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011378 416 ITYNVILTGFCRQGRMHDSELILWRMIEKGLNP 448 (487)
Q Consensus 416 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 448 (487)
.+|+++|.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.18 E-value=0.003 Score=53.63 Aligned_cols=202 Identities=14% Similarity=0.050 Sum_probs=135.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-eeehHHHHHHHHcc
Q 011378 210 TILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPD-IVTYNTLIDGFCKV 288 (487)
Q Consensus 210 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~ 288 (487)
-|--.|.+.|+...|..-+++..+.. +-+.-+|..+-..|.+.|+.+.|.+.|+...+. .|+ ..+.|..=-.+|..
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhC
Confidence 44566788888888888888887753 224457788888888888888888888866542 343 34455555556888
Q ss_pred CCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 011378 289 GEMEKANKLWADMISRKISP-NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEF 367 (487)
Q Consensus 289 g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 367 (487)
|++++|...|+.....-.-| -..||..+.-+..+.|+.+.|...++.-.... +-...+...+.+...+.|++-.|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 88888888888766542222 23567777777778888888888887765442 22233455566667777888888777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhH
Q 011378 368 LSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITY 418 (487)
Q Consensus 368 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 418 (487)
++.....+. ++..+.-..|.--.+.|+.+.+.+.=..+... .|.+..|
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 777776655 66666666666666777777776655555442 3444433
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.0039 Score=54.88 Aligned_cols=298 Identities=15% Similarity=0.117 Sum_probs=195.5
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHH
Q 011378 24 KGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKP-GVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTAT 102 (487)
Q Consensus 24 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 102 (487)
.|+.....-+.+++..+.+..++++|++++..-.++ .| +......+-..|....++..|-..++++-+. .|...-
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~q 79 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQ 79 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHH
Confidence 344444555888999999999999999999887665 34 4555666667778889999999999998764 466655
Q ss_pred HHHH-HHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH--HHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 011378 103 YNTL-LVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGI--FSRNGQLDRALMYFREMKSAGLVPDNVLYTIIING 179 (487)
Q Consensus 103 ~~~l-l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 179 (487)
|... -..+-+.+.+.+|++|...|.+. |+...-..-+.+ -...+++..+..+.++....| +..+.+..--.
T Consensus 80 YrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCl 153 (459)
T KOG4340|consen 80 YRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchhe
Confidence 5432 23455778899999999998764 333322222222 345788889999988875432 22233333333
Q ss_pred HHhcCCHHHHHHHHHHHHH-cCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CCHH----
Q 011378 180 YCRNGFVLEALKMRDEMLE-KGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVF-------------PDFY---- 241 (487)
Q Consensus 180 ~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------~~~~---- 241 (487)
..+.|+.+.|.+-|....+ .|+.| ...||.-+..| +.++.+.|.+...+..++|++ ||..
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 4588999999998888766 46655 55788777654 678999999999999999874 2321
Q ss_pred ----HHHHHHHH-------HHhcCCHHHHHHHHHHHHHC-CCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 011378 242 ----TFTTLIHG-------HCKDGNMNKALNLFDIMTQK-SIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPN 309 (487)
Q Consensus 242 ----t~~~li~~-------~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 309 (487)
.-+.++.+ +.+.|+.+.|.+.+-.|.-+ .-..|..|...+.-.=. .+++-+..+-+.-+.... +-.
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP 309 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFP 309 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCC
Confidence 12334433 45677888887777666432 23345566544332211 222222222222222221 124
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 310 YISYGILINGYCSMGHVTEAFRLWYE 335 (487)
Q Consensus 310 ~~t~~~li~~~~~~~~~~~a~~~~~~ 335 (487)
..||..++-.||++.-++.|-.++-+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 57999999999999999999988865
No 96
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.008 Score=57.95 Aligned_cols=118 Identities=17% Similarity=0.199 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCChhhHH
Q 011378 315 ILINGYCSMGHVTEAFRLWY--------EMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS--EGVDPDSISYN 384 (487)
Q Consensus 315 ~li~~~~~~~~~~~a~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~ 384 (487)
.++......|+++.|.+++. .+...+..|-. ...+...+.+.++.+.|..++.+... ..-.+......
T Consensus 381 ~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~ 458 (652)
T KOG2376|consen 381 LRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALL 458 (652)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHH
Confidence 34444455555555555555 23223333322 22344445555555555555544432 11122222222
Q ss_pred HHHHHH----hccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 011378 385 TLINGF----VREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSEL 436 (487)
Q Consensus 385 ~li~~~----~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 436 (487)
+++.-. .+.|+-++|..+++++-+.+ .+|..+...++.+|++- +.+.|+.
T Consensus 459 ~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 459 SLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred hHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHH
Confidence 222222 24455555555555554432 34555555555555554 3444443
No 97
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.0078 Score=57.74 Aligned_cols=285 Identities=13% Similarity=0.086 Sum_probs=200.2
Q ss_pred CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHH
Q 011378 131 VAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNT 210 (487)
Q Consensus 131 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 210 (487)
..-+......-..-|-..+++.+..++++...+. .++....+..=|..+...|+..+-+.+=.+|.+. .+-...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 3344444555566778889999999999987763 2344455666677888889888777776677654 3456678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCe-eehHHHHHHHHcc
Q 011378 211 ILNGLCRAKMLTEADDLFNEMLERGVFPD-FYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDI-VTYNTLIDGFCKV 288 (487)
Q Consensus 211 li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~ 288 (487)
+---|.-.|..++|.+.|.+...- .|. ...|-..-++|+-.|.-|.|+..+....+--..-.. ..|-. --|.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg--mey~~t 393 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG--MEYMRT 393 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH--HHHHHh
Confidence 888888889999999999986542 222 356888889999999999999988766543211111 12222 236778
Q ss_pred CCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh--C----CCCCChhhHHHHHHHHHhcCCh
Q 011378 289 GEMEKANKLWADMISRKISP-NYISYGILINGYCSMGHVTEAFRLWYEMVG--K----GIKPTLVSCNTIIKGYCRSGDA 361 (487)
Q Consensus 289 g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~--~----~~~~~~~~~~~li~~~~~~~~~ 361 (487)
+.++.|.+.|.+.. ++.| |....+-+--..-..+.+.+|...|+.-.. + .......+++.|=.+|.+.+..
T Consensus 394 ~n~kLAe~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 394 NNLKLAEKFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred ccHHHHHHHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 89999999998764 4455 344444444444456788899888886551 1 1112344577777888899999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011378 362 SKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFC 426 (487)
Q Consensus 362 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (487)
++|...+++..... +-|..++.++--.|...|+++.|...|.+-- .++||-.+-..++..+.
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 99999999877543 3467788888888899999999999887653 56888766666666443
No 98
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.11 E-value=0.0033 Score=53.40 Aligned_cols=194 Identities=14% Similarity=0.083 Sum_probs=132.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHh
Q 011378 104 NTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD-NVLYTIIINGYCR 182 (487)
Q Consensus 104 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~ 182 (487)
.-|--.|...|+...|..-+++..+.. +.+..+|..+...|-+.|+.+.|.+.|++..+. .|+ ..+.|..=.-+|.
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHh
Confidence 345556778888888888888877653 224456777788888888888888888887653 343 3455666666778
Q ss_pred cCCHHHHHHHHHHHHHc-CCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011378 183 NGFVLEALKMRDEMLEK-GCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALN 261 (487)
Q Consensus 183 ~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~ 261 (487)
.|.+++|...|++-... ...--..+|..+.-+..+.|+.+.|++.|++..+.. +-.+.+...+-....+.|+.-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 88888888888776653 233334577777777788888888888888877643 1233456666777777788878877
Q ss_pred HHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHH
Q 011378 262 LFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMI 302 (487)
Q Consensus 262 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (487)
.++.....+. ++..+.---|+.-...|+.+.+.+.=..+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7776665554 555555555666666677666665544444
No 99
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.09 E-value=0.014 Score=57.80 Aligned_cols=308 Identities=16% Similarity=0.169 Sum_probs=166.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011378 114 ENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMR 193 (487)
Q Consensus 114 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 193 (487)
.++.+|+.+|-+- |. --..|..|..-..||+|+.+-+. .|-+.-...-.+.++++...|+-+.|-++-
T Consensus 545 kkfk~ae~ifleq-------n~--te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk 612 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQ-------NA--TEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK 612 (1636)
T ss_pred hhhhHHHHHHHhc-------cc--HHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc
Confidence 4566777766432 11 13467777777788888776543 222222233445566777777777765443
Q ss_pred HHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011378 194 DEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKP 273 (487)
Q Consensus 194 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 273 (487)
+ .|..+ -+.|+.|.+.|.+..|.+.-.. +..+..|.....-+-.++.+..-+++|=++|+.+..
T Consensus 613 ~--------sdgd~-laaiqlyika~~p~~a~~~a~n--~~~l~~de~il~~ia~alik~elydkagdlfeki~d----- 676 (1636)
T KOG3616|consen 613 E--------SDGDG-LAAIQLYIKAGKPAKAARAALN--DEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----- 676 (1636)
T ss_pred c--------ccCcc-HHHHHHHHHcCCchHHHHhhcC--HHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC-----
Confidence 2 11112 2457888888888777655321 112334555555555555555555555555554431
Q ss_pred CeeehHHHHHHHHccCCHHHHHHHHHHH---------------HhCCCCCCh--------hhHHHHHHHHHhcCCHHHHH
Q 011378 274 DIVTYNTLIDGFCKVGEMEKANKLWADM---------------ISRKISPNY--------ISYGILINGYCSMGHVTEAF 330 (487)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m---------------~~~~~~p~~--------~t~~~li~~~~~~~~~~~a~ 330 (487)
+..-+.+|.+-..+-+|.++-+-. ....-+-|. ...---|.+-.....+.+|+
T Consensus 677 ----~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai 752 (1636)
T KOG3616|consen 677 ----FDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAI 752 (1636)
T ss_pred ----HHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhH
Confidence 112222332222223332221100 000000000 00111233444556677777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 011378 331 RLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQG 410 (487)
Q Consensus 331 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 410 (487)
.+++.+..... -..-|--+-+.|+..|+++.|+++|.+.- .++--|..|.+.|++++|.++-++.. |
T Consensus 753 ~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~ 819 (1636)
T KOG3616|consen 753 SILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--G 819 (1636)
T ss_pred hHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--C
Confidence 77776654432 22235566778888888888888876422 24455777888888888877665543 2
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 411 LVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDE 475 (487)
Q Consensus 411 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~ 475 (487)
-...+..|-.-..-.-++|++.+|++++-... .|+ .-|.+|-++|..++.+++.++
T Consensus 820 ~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 820 PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 22344555555566677888888877654431 244 236678888888888877654
No 100
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=0.00034 Score=68.66 Aligned_cols=215 Identities=15% Similarity=0.149 Sum_probs=164.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011378 242 TFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYC 321 (487)
Q Consensus 242 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 321 (487)
.-..+-..+.+.|-...|+.+|+... .|...|.+|+..|+-.+|..+.++-.+ -+||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 33456677888999999999998654 678899999999999999999887665 5788899999888887
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCHHHHH
Q 011378 322 SMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDP-DSISYNTLINGFVREENMDKAF 400 (487)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~ 400 (487)
...-+++|.++++..... .-..+-....+.++++++.+.++.-.+.+ | -..+|-.+=.+..+.+++..|.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHH
Confidence 777789999988765322 00001111223688899988887655432 2 2345655666667888999998
Q ss_pred HHHHHHHhCCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011378 401 ALVSKMENQGLVPDV-ITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQR 479 (487)
Q Consensus 401 ~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~ 479 (487)
+.|..-.. +.||- ..||.+-.+|.+.|+-.+|...+++..+.. .-+-..|+..+-.....|.+++|++.+++|...
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 88877654 46765 569999999999999999999999988776 556667777777788899999999999988753
No 101
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.07 E-value=6.3e-05 Score=71.30 Aligned_cols=123 Identities=16% Similarity=0.131 Sum_probs=72.7
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011378 166 LVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEK--GCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTF 243 (487)
Q Consensus 166 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~ 243 (487)
...+.....++++.+....+++++..++-.++.. ....-..|.+++|+.|.+.|..+.+..+++.=..-|+.||.+|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3344555666666666666666666666655543 22223334456666666666666666666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHcc
Q 011378 244 TTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKV 288 (487)
Q Consensus 244 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 288 (487)
+.+|+.+.+.|++..|.+|...|.......+..|+.--+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666665555555555555555444444
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.06 E-value=0.012 Score=56.16 Aligned_cols=424 Identities=10% Similarity=0.108 Sum_probs=209.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 011378 28 PDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLL 107 (487)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 107 (487)
-|+.+|+.||+-+-.. .++++.+.++++... ++.++..|..-|++-.+..+++.+.++|.+.+..-+ +...|...|
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 5889999999988544 999999999998652 333457799999999999999999999999876543 455555555
Q ss_pred HHHHc-cCChhHHHHH----HHH-HHHCCCCCC-HhHHHHHH---------HHHHhCCCHHHHHHHHHHHHHCCCCC---
Q 011378 108 VESCR-KENMSEAEEI----FCE-MSRRGVAPD-IVSFSTLI---------GIFSRNGQLDRALMYFREMKSAGLVP--- 168 (487)
Q Consensus 108 ~~~~~-~~~~~~a~~~----~~~-m~~~g~~p~-~~~~~~li---------~~~~~~g~~~~a~~~~~~m~~~g~~~--- 168 (487)
.---+ .++...+... |+- +.+-|+.+- ...|+.-+ .-+....+++.+.+++..+....+.-
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 43222 2333332222 222 223444332 22344333 23555567778888888886532211
Q ss_pred ---ChhhHHHHHHHHHh-------cCCHHHHHHHHHHHHH--cCCcCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHH-
Q 011378 169 ---DNVLYTIIINGYCR-------NGFVLEALKMRDEMLE--KGCVMDVVTYNTILNGLCRAKMLT--EADDLFNEMLE- 233 (487)
Q Consensus 169 ---~~~~~~~ll~~~~~-------~~~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~- 233 (487)
|-..|-.=|+.... ......|.++..++.. .|...+..+ .=..|--+ ...++|..+.+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHHHH
Confidence 11122222222211 2233445555555432 233222111 00001111 11122222211
Q ss_pred ---cCCC-CC--------HHHHHHHHHHHHhcCC-HHHHHHHHHHH----HHCCCCCCeeehHHHHHHHHccCCHHHHHH
Q 011378 234 ---RGVF-PD--------FYTFTTLIHGHCKDGN-MNKALNLFDIM----TQKSIKPDIVTYNTLIDGFCKVGEMEKANK 296 (487)
Q Consensus 234 ---~~~~-~~--------~~t~~~li~~~~~~g~-~~~a~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 296 (487)
.++. .+ .++|+-.|..+.-+.+ +-.+-..+... .+.|-.|+... ..+++..
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~------------~t~e~~~ 314 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKS------------LTDEAAS 314 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchh------------hHHHHHH
Confidence 1111 00 0122222222111111 11111111111 11111111111 0223333
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 297 LWADMISRKISPNYISYGILINGYC---SMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS 373 (487)
Q Consensus 297 ~~~~m~~~~~~p~~~t~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (487)
+++.....-..-+..+|..+.+-=- .-...+.....++.....-..--..+|..+++.-.|..-++.|..+|.+..+
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~ 394 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE 394 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 3332221111112222222111100 0012333444444444332222233566666666677777777777777777
Q ss_pred CCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-
Q 011378 374 EGVDP-DSISYNTLINGFVREENMDKAFALVSKMENQGLVPDV-ITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR- 450 (487)
Q Consensus 374 ~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~- 450 (487)
.+..+ ++.+++++|..|+ .++.+-|.++|+.-.+. -+|. .--...++.+..-++=..++.+|++....++.|+.
T Consensus 395 ~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks 471 (656)
T KOG1914|consen 395 DKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKS 471 (656)
T ss_pred ccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhh
Confidence 77666 6667777777664 35556677777543221 1232 33355666666777777777777777766555544
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 451 -STYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 451 -~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
..|..+++--+..|+...+.++-+++.
T Consensus 472 ~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 472 KEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 477777777777777777777766554
No 103
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.018 Score=57.85 Aligned_cols=50 Identities=26% Similarity=0.355 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011378 430 RMHDSELILWRMIEKGLNPD----RSTYTTLINGHVSQNNLKEAFRFHDEMLQR 479 (487)
Q Consensus 430 ~~~~a~~~~~~m~~~g~~p~----~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~ 479 (487)
+..+...-+..|.+..+-|+ ...|.-+|..|++..+|.+|.+.+.+|+..
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 33334444444555544443 347788889999999999999999998753
No 104
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.03 E-value=9.5e-05 Score=70.09 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=63.1
Q ss_pred CCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHH
Q 011378 133 PDIVSFSTLIGIFSRNGQLDRALMYFREMKSAG--LVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNT 210 (487)
Q Consensus 133 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 210 (487)
.+......+++.+....+++.+..++-.++... ...-..|..++++.|.+.|..++++.++..=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 344444555555555555555555555554431 111122334555555555555555555555555555555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011378 211 ILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKD 253 (487)
Q Consensus 211 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~ 253 (487)
||+.+.+.|++..|.++..+|..++...++.|+...+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555554444
No 105
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.00 E-value=0.00015 Score=53.88 Aligned_cols=79 Identities=18% Similarity=0.385 Sum_probs=57.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHHHHH
Q 011378 384 NTLINGFVREENMDKAFALVSKMENQGL-VPDVITYNVILTGFCRQG--------RMHDSELILWRMIEKGLNPDRSTYT 454 (487)
Q Consensus 384 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~ty~ 454 (487)
...|..|...+++.....+++.++..|+ .|++.+|+.++.+.++.. ++-....++++|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555556777777777777777777 777777777777766543 3445567888898889999999999
Q ss_pred HHHHHHHh
Q 011378 455 TLINGHVS 462 (487)
Q Consensus 455 ~l~~~~~~ 462 (487)
.++..+..
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99888764
No 106
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.99 E-value=5.8e-05 Score=56.06 Aligned_cols=76 Identities=24% Similarity=0.331 Sum_probs=44.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCC-CCCccchHHHHHHHHhcCC--------hhhHHHHHHHHHHCCCCCCHHHHHH
Q 011378 35 TLINAYCREGFLEEAFQLMNSMSGKGL-KPGVFTYNSLINGLCKKGR--------CDRAKEVLDEMLQMGLSPDTATYNT 105 (487)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~--------~~~a~~~~~~m~~~g~~~~~~~~~~ 105 (487)
.-|..+...+++.....+|+.++..|+ .|+..+|+.++++.++..- .-..+.++++|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555556777777777777777777 6777777777776655321 1134445555555555555555555
Q ss_pred HHHHH
Q 011378 106 LLVES 110 (487)
Q Consensus 106 ll~~~ 110 (487)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 55444
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.98 E-value=0.0027 Score=66.95 Aligned_cols=222 Identities=11% Similarity=0.121 Sum_probs=144.0
Q ss_pred CCc-cchHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhH
Q 011378 63 PGV-FTYNSLINGLCKKGRCDRAKEVLDEMLQM-GLSPD---TATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVS 137 (487)
Q Consensus 63 p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 137 (487)
||+ ..|..-|..+.+.++.+.|++++++.+.. .++-. .-.|.+++..-.-.|.-+...++|++..+.-- .-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHH
Confidence 554 55888888888889999999999887642 11111 23566777766667777788888888776421 1234
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCC---hhhHHHHHHH
Q 011378 138 FSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMD---VVTYNTILNG 214 (487)
Q Consensus 138 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~ 214 (487)
|..|...|.+.+..++|.++++.|.+. +.-....|...++.+.+....+.|..++.+..+. .|- ..........
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 667888888888888888888888653 2244567777778887877777777777665542 222 2233444455
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCe--eehHHHHHHHHccCC
Q 011378 215 LCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDI--VTYNTLIDGFCKVGE 290 (487)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~ 290 (487)
-.+.|+.+.+..+|+.....- +--...|+..|+.=.++|+.+.+.++|+.....++.|-- ..|...+..=.+.|+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 566777777777777766432 113346777777777777777777777777766666532 334444444444444
No 108
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.97 E-value=1e-05 Score=46.01 Aligned_cols=26 Identities=27% Similarity=0.727 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 418 YNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 418 ~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
||++|++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 33334444444444444444333333
No 109
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.90 E-value=1.7e-05 Score=45.14 Aligned_cols=31 Identities=39% Similarity=0.654 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011378 451 STYTTLINGHVSQNNLKEAFRFHDEMLQRGF 481 (487)
Q Consensus 451 ~ty~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 481 (487)
.||+.++++|++.|++++|.+++++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3899999999999999999999999999986
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.88 E-value=0.01 Score=58.78 Aligned_cols=219 Identities=12% Similarity=0.075 Sum_probs=144.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011378 167 VPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTL 246 (487)
Q Consensus 167 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~l 246 (487)
.|-...-..+...+...|-..+|..+++++ ..|..+|.+|+..|+...|+.+..+..+ -+||+.-|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 344444556677788888889998888875 3678889999999999999999887766 46888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-CCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011378 247 IHGHCKDGNMNKALNLFDIMTQK-SIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGH 325 (487)
Q Consensus 247 i~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 325 (487)
.+......-+++|.++++....+ ...... .....++++++.+-|+.-.... +-...+|=.+-.+..+.++
T Consensus 464 GDv~~d~s~yEkawElsn~~sarA~r~~~~--------~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISARAQRSLAL--------LILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHHHHHhhcc--------ccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 88877777788888888654322 011011 1122567777777776543221 1123455555555566677
Q ss_pred HHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 011378 326 VTEAFRLWYEMVGKGIKPTL-VSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVS 404 (487)
Q Consensus 326 ~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 404 (487)
++.|.+.|..-.. ..||. ..||.+-.+|.+.++-.+|...+.+..+-+ .-+...|..-+-.-.+.|.+++|.+.+.
T Consensus 535 ~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 7777777665542 34443 467777777777777777777777777655 2333445555556667777777777776
Q ss_pred HHHh
Q 011378 405 KMEN 408 (487)
Q Consensus 405 ~m~~ 408 (487)
++.+
T Consensus 612 rll~ 615 (777)
T KOG1128|consen 612 RLLD 615 (777)
T ss_pred HHHH
Confidence 6653
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.88 E-value=0.0085 Score=63.43 Aligned_cols=227 Identities=13% Similarity=0.083 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011378 240 FYTFTTLIHGHCKDGNMNKALNLFDIMTQK-SIKP---DIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGI 315 (487)
Q Consensus 240 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ 315 (487)
...|...|......++.++|..+++..... +++- -...|.++++.--..|.-+...++|++..+. .-....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 345777777777777888887777765431 1111 1246777777766677777777788766542 223455677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhc
Q 011378 316 LINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD---SISYNTLINGFVR 392 (487)
Q Consensus 316 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~ 392 (487)
|...|.+.+.+++|.++++.|.++ +.....+|......+.+..+.+.|..++....+. -|. ...-+-....=.+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 888888888888888888888764 3366778888888888888888888888776542 222 2222333333357
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHH
Q 011378 393 EENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR--STYTTLINGHVSQNNLKEAF 470 (487)
Q Consensus 393 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~ty~~l~~~~~~~~~~~~a~ 470 (487)
.|+.+++..+|+..... ..--...|++.|+.=.++|+...++.+|++..+.++.|.. ..|..++..--++|+-+.+.
T Consensus 1613 ~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 88999999999877543 2224568999999999999999999999999999988865 47888888877778755544
Q ss_pred HH
Q 011378 471 RF 472 (487)
Q Consensus 471 ~~ 472 (487)
.+
T Consensus 1692 ~V 1693 (1710)
T KOG1070|consen 1692 YV 1693 (1710)
T ss_pred HH
Confidence 33
No 112
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.024 Score=52.46 Aligned_cols=292 Identities=15% Similarity=0.079 Sum_probs=188.7
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChh-hHHHHHH
Q 011378 138 FSTLIGIFSR--NGQLDRALMYFREMKSAG-LVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVV-TYNTILN 213 (487)
Q Consensus 138 ~~~li~~~~~--~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~ 213 (487)
.+.-+.+++. .++-..+...+-.+.... +.-|......+-+.+...|+.+++...|++.+.. .|+.. ....---
T Consensus 197 ls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~ 274 (564)
T KOG1174|consen 197 LSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAV 274 (564)
T ss_pred HHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHH
Confidence 3334444433 444445554444444333 3445667888888999999999998888876542 22221 1122223
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHH---HHHHccCC
Q 011378 214 GLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLI---DGFCKVGE 290 (487)
Q Consensus 214 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li---~~~~~~g~ 290 (487)
.+.+.|++++...+-..+.... .-+...|-.-.......++.+.|+.+-+... ..+....-.+| ..+...|+
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I----~~~~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCI----DSEPRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHh----ccCcccchHHHhccHHHHhccc
Confidence 3456788888777777765432 1122223333344456677888877665544 33444443444 45677889
Q ss_pred HHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH-HHHHH-hcCChHHHHHH
Q 011378 291 MEKANKLWADMISRKISP-NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTI-IKGYC-RSGDASKADEF 367 (487)
Q Consensus 291 ~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~-~~~~~~~a~~~ 367 (487)
.++|.=-|+..+. +.| +..+|..|+.+|...|.+.+|.-+-++..+. ++.+..+.+.+ -.+|. ...--++|+.+
T Consensus 350 ~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 350 HTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred hHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 9999888887653 444 6789999999999999999998877665432 23344444333 12332 22335778888
Q ss_pred HHHHHHCCCCCChh-hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 368 LSKMVSEGVDPDSI-SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 368 ~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
+++-. .+.|+.. ..+.+-..|...|..+++..++++-.. ..||....+.|-+.+...+.+.+|...|.....
T Consensus 427 ~ek~L--~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 427 AEKSL--KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhh--ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 87654 3557643 566777888899999999999987654 479999999999999999999999988887654
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.82 E-value=0.0062 Score=54.21 Aligned_cols=185 Identities=12% Similarity=0.024 Sum_probs=114.9
Q ss_pred eeehHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCh-hhHHH
Q 011378 275 IVTYNTLIDGFCKVGEMEKANKLWADMISRKI-SPN-YISYGILINGYCSMGHVTEAFRLWYEMVGKGIK-PTL-VSCNT 350 (487)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~~~ 350 (487)
...+-.+...+.+.|++++|...|.+...... .|. ...+..+..++...|++++|...++.+.+..-. |.. .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 34566666778888899999888888765431 111 235667778888888999999988888754311 111 12333
Q ss_pred HHHHHHhc--------CChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 011378 351 IIKGYCRS--------GDASKADEFLSKMVSEGVDPDSI-SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVI 421 (487)
Q Consensus 351 li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 421 (487)
+-.++... |+.+.|.+.++..... .|+.. .+..+.... . .. .... ...-.+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~------~~~~--------~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LR------NRLA--------GKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HH------HHHH--------HHHHHH
Confidence 33344433 5677777777777653 23322 121111100 0 00 0000 011245
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011378 422 LTGFCRQGRMHDSELILWRMIEKGL-NP-DRSTYTTLINGHVSQNNLKEAFRFHDEMLQR 479 (487)
Q Consensus 422 i~~~~~~g~~~~a~~~~~~m~~~g~-~p-~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~ 479 (487)
...+.+.|++.+|...+.+.....- .| ....+..+..++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5678899999999999999876421 23 3568889999999999999999998888654
No 114
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.81 E-value=0.00034 Score=58.85 Aligned_cols=104 Identities=19% Similarity=0.304 Sum_probs=66.8
Q ss_pred CCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 011378 307 SPNYISYGILINGYCSM-----GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSI 381 (487)
Q Consensus 307 ~p~~~t~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 381 (487)
..+-.+|..+++.|... |+++-....+..|...|++-|..+|+.||+.+-+ |.+. |...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence 45667777777777543 5666666666677777777777777777776654 2211 1111
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 011378 382 SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQG 429 (487)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 429 (487)
... +---| ..+-+-|.+++++|+..|+-||..++..++..|++.+
T Consensus 108 fQ~-~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 FQA-EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHH-HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111 11111 2345678888999999999999999999999987665
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.023 Score=49.52 Aligned_cols=167 Identities=17% Similarity=0.179 Sum_probs=103.5
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011378 300 DMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD 379 (487)
Q Consensus 300 ~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 379 (487)
.+.......+...-..-...|+..|++++|++.... +- +....-.=...+.+..+.+-|...+++|.+- -+
T Consensus 98 ~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 98 LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----GE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 333333333333333344557788888888887654 11 2222222233455667788888888888752 24
Q ss_pred hhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 011378 380 SISYNTLINGFVR----EENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTT 455 (487)
Q Consensus 380 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ 455 (487)
..|.+-|-.+|++ .+++.+|.-+|++|-+. ..|+..+-+.....+...|++++|+.+++..+.+.-. ++.|...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHH
Confidence 5566666666654 35688888888888653 5788888888888888888888888888888765432 3445555
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHH
Q 011378 456 LINGHVSQNN-LKEAFRFHDEML 477 (487)
Q Consensus 456 l~~~~~~~~~-~~~a~~~~~~m~ 477 (487)
++-+-...|. .+-.-+.+.++.
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHH
Confidence 5444444444 333445555554
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.75 E-value=0.0058 Score=54.42 Aligned_cols=61 Identities=18% Similarity=0.074 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 206 VTYNTILNGLCRAKMLTEADDLFNEMLERGVFPD-F---YTFTTLIHGHCKDGNMNKALNLFDIMTQ 268 (487)
Q Consensus 206 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~---~t~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (487)
..+-.+...+.+.|+++.|...|++..... |+ + ..+..+..++...|++++|...++.+.+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344555556666677777776666665432 22 1 2445555666666666666666666554
No 117
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.69 E-value=0.00037 Score=58.63 Aligned_cols=105 Identities=18% Similarity=0.219 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHc-----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChh
Q 011378 97 SPDTATYNTLLVESCR-----KENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNV 171 (487)
Q Consensus 97 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 171 (487)
..|..+|..++..+.+ .|.++-....+..|.+.|+.-|..+|+.||..+-+..-. |...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fv----------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFV----------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcc----------------cccH
Confidence 3566666666666653 467777777788888888888888888888877653211 1111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCC
Q 011378 172 LYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKM 220 (487)
Q Consensus 172 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 220 (487)
...... -...+.+-+.+++++|+..|+.||..|+..|++.+++.+.
T Consensus 108 fQ~~F~---hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFM---HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhc---cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111000 0122345566677777777777777777777777766554
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.66 E-value=0.053 Score=56.69 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHH
Q 011378 242 TFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWAD 300 (487)
Q Consensus 242 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 300 (487)
.+..+-.+|-+.|+.+++..+|+.+.+.. +-|....|.+-..|+.. ++++|..++..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 33444444445555555555555444433 22334444444444444 55555544443
No 119
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.62 E-value=0.092 Score=52.61 Aligned_cols=212 Identities=17% Similarity=0.100 Sum_probs=126.5
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCC
Q 011378 19 CEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSP 98 (487)
Q Consensus 19 ~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 98 (487)
.+++...++-|+..|..+.=++.+.|+++.+-+.|++..-. ..-..+.|+.+-..++..|.-..|..+++.-....-.|
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 34444456678888888888888889988888888875432 22244667777777888888888888887654332224
Q ss_pred CH-HHHHHHHHHHH-ccCChhHHHHHHHHHHH--CCCC--CCHhHHHHHHHHHHh----C-------CCHHHHHHHHHHH
Q 011378 99 DT-ATYNTLLVESC-RKENMSEAEEIFCEMSR--RGVA--PDIVSFSTLIGIFSR----N-------GQLDRALMYFREM 161 (487)
Q Consensus 99 ~~-~~~~~ll~~~~-~~~~~~~a~~~~~~m~~--~g~~--p~~~~~~~li~~~~~----~-------g~~~~a~~~~~~m 161 (487)
+. ..+-..-+.|. +.+.++++.+.-.+... .|.. .....|-.+--+|.. . ....++++.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 32 22222222232 33566666655544443 1111 111222222222221 1 1223566777776
Q ss_pred HHCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 162 KSAGL-VPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLE 233 (487)
Q Consensus 162 ~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (487)
.+.+. .|+...|-++ . |+-.+++..|.+...+..+-+-.-+...|.-+.-.+...+++.+|+.+.+...+
T Consensus 471 v~~d~~dp~~if~lal-q-~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLAL-Q-YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HhcCCCCchHHHHHHH-H-HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 66443 3333333332 2 556778888888888887776666778888888888888888888888776654
No 120
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.018 Score=55.45 Aligned_cols=245 Identities=18% Similarity=0.155 Sum_probs=165.4
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHH
Q 011378 110 SCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD-NVLYTIIINGYCRNGFVLE 188 (487)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~ 188 (487)
+.+.|++.+|.-.|+...+.. +-+...|.-|-...+..++=..|+..+.+..+ +.|+ ......|--.|...|.-.+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHH
Confidence 457788888888888776653 22566787788888888888888888777665 3454 4456667777888898899
Q ss_pred HHHHHHHHHHcCCc--------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011378 189 ALKMRDEMLEKGCV--------MDVVTYNTILNGLCRAKMLTEADDLFNEMLE-RGVFPDFYTFTTLIHGHCKDGNMNKA 259 (487)
Q Consensus 189 a~~~~~~m~~~g~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~t~~~li~~~~~~g~~~~a 259 (487)
|+++++.+.....+ ++...-+. ..+.....+..+.++|-++.. .+.++|+.....|--.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999888654321 01110000 222233345667777777644 45557777888888888889999999
Q ss_pred HHHHHHHHHCCCCC-CeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHH-
Q 011378 260 LNLFDIMTQKSIKP-DIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNY-ISYGILINGYCSMGHVTEAFRLWYEM- 336 (487)
Q Consensus 260 ~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m- 336 (487)
.+.|+...+ ++| |..+||.|=-.++...+.++|..-|++..+ ++|+. ...-.|--+|...|.+++|.+.|-..
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999987764 356 456789988888888889999999987764 45654 23445666788999999998877653
Q ss_pred --HhCCC------CCChhhHHHHHHHHHhcCChHH
Q 011378 337 --VGKGI------KPTLVSCNTIIKGYCRSGDASK 363 (487)
Q Consensus 337 --~~~~~------~~~~~~~~~li~~~~~~~~~~~ 363 (487)
.+++- .++-..|.+|=.++...++.+.
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 33311 1223456666555555555443
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.59 E-value=0.021 Score=59.55 Aligned_cols=236 Identities=10% Similarity=0.091 Sum_probs=121.9
Q ss_pred ccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 011378 65 VFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLV-ESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIG 143 (487)
Q Consensus 65 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 143 (487)
...|..|++.+...+++++|.++.+.-.+. .|+...+-.+.. .+...++.+++.-+ .++.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 455666777777777777777777744432 344322211111 33333333333222 2333
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHH
Q 011378 144 IFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTE 223 (487)
Q Consensus 144 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~ 223 (487)
.+....++..+..+...|... .-+...+..+..+|-+.|..+++..++++..+.. +-|+...|.+-..|... +++.
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 344444443333344444332 1223355566666666677777777777666655 44556666666666666 6666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHh
Q 011378 224 ADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMIS 303 (487)
Q Consensus 224 a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (487)
|.+++.+.... +...+++..+.++|..+.... |+ +++.-.++.+.+..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki~~ 215 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKVLG 215 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHHHh
Confidence 66666665442 455556666666666655431 11 12222222222222
Q ss_pred C-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011378 304 R-KISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYC 356 (487)
Q Consensus 304 ~-~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 356 (487)
. +..--+.++-.+-..|-...+++++..+++.+.+.. +.|.....-|+.+|.
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 1 223334455555566666677777777777766543 234445555665554
No 122
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.47 E-value=0.15 Score=51.21 Aligned_cols=206 Identities=12% Similarity=0.092 Sum_probs=114.9
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhH
Q 011378 94 MGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLY 173 (487)
Q Consensus 94 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 173 (487)
..+.-|...|.-|.-+..+.|+++.+.+.|++....-+. ....|..+-..++-+|.-..|..+++.-....-.|+..+-
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 345567777777777888888888888888776543222 3445777777777777777777777765433222432222
Q ss_pred HHHH-HHHH-hcCCHHHHHHHHHHHHH----cCCcCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcC-
Q 011378 174 TIII-NGYC-RNGFVLEALKMRDEMLE----KGCVMDVVTYNTILNGLCRA-----------KMLTEADDLFNEMLERG- 235 (487)
Q Consensus 174 ~~ll-~~~~-~~~~~~~a~~~~~~m~~----~g~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~- 235 (487)
-.++ ..|. +.+.+++++++-.+..+ ..-...+..|..+--+|... .....+.+.+++..+.+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 2222 2222 23455555554443333 11112233444333333321 12334445555554432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHH
Q 011378 236 VFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMI 302 (487)
Q Consensus 236 ~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (487)
-.|+..-|-++ -|+..++++.|.+..+...+-+-.-+...|.-|.-.+...+++.+|+.+.....
T Consensus 476 ~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 476 TDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred CCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 23333333333 456667778887777777666555666777777777777777777777776544
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.46 E-value=0.051 Score=55.96 Aligned_cols=229 Identities=13% Similarity=0.080 Sum_probs=146.9
Q ss_pred HHHHHHHHhcCChhHH-HHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011378 34 NTLINAYCREGFLEEA-FQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCR 112 (487)
Q Consensus 34 ~~ll~~~~~~~~~~~a-~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 112 (487)
.-+=.+++.-|..++| .+++++..+ ++...++.....+++.-...... ....+...+-.|-.....
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i~~~ 98 (694)
T PRK15179 32 DLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARALEA 98 (694)
T ss_pred hHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHHHHH
Confidence 3333445556666655 344544432 44444444444433333322221 234457777778888888
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHH
Q 011378 113 KENMSEAEEIFCEMSRRGVAPD-IVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDN-VLYTIIINGYCRNGFVLEAL 190 (487)
Q Consensus 113 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~~~a~ 190 (487)
.|..++|+.+++...+. .|+ ......+..++.+.+++++|+...++.... .|+. .....+-.++.+.|..++|.
T Consensus 99 ~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A~ 174 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQAD 174 (694)
T ss_pred cCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHHH
Confidence 99999999999988774 564 445666788889999999999999888764 4554 45666677788899999999
Q ss_pred HHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011378 191 KMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKS 270 (487)
Q Consensus 191 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 270 (487)
.+|++.... .+-+..++-.+-.++...|+.++|...|+...+. ..|...-|+..+. ++..-...++.+.-.+
T Consensus 175 ~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 246 (694)
T PRK15179 175 ACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------DLNADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------HHHHHHHHHHHcCccc
Confidence 999999873 2234667888888888899999999999988764 2344555555442 3344445555443332
Q ss_pred ----CCCCeeehHHHHHHHHc
Q 011378 271 ----IKPDIVTYNTLIDGFCK 287 (487)
Q Consensus 271 ----~~~~~~~~~~li~~~~~ 287 (487)
....+.....+|..|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 247 DGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred ccCCCceeeeeHHHHHHHHhh
Confidence 22233344555555443
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.022 Score=49.53 Aligned_cols=159 Identities=11% Similarity=0.016 Sum_probs=103.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011378 279 NTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRS 358 (487)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 358 (487)
..+-..+-..|+-+....+...... ....|....+.......+.|++..|...+++.... -++|...|+.+=-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 3344455555665555555544321 11223344455777777778888888877776543 366777788777788888
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 011378 359 GDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELIL 438 (487)
Q Consensus 359 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 438 (487)
|+.+.|..-+.+..+.-. -+....|.|--.|.-.|+++.|..++.+-...+ .-|...-..+.-.-..+|++++|+.+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 888888877777665322 133456666666677788888888887776654 225556677777778888888887766
Q ss_pred HHH
Q 011378 439 WRM 441 (487)
Q Consensus 439 ~~m 441 (487)
.+-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 554
No 125
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.40 E-value=0.0088 Score=56.74 Aligned_cols=118 Identities=16% Similarity=0.195 Sum_probs=51.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 011378 316 LINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREEN 395 (487)
Q Consensus 316 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 395 (487)
|+..+...++++.|..+++++.+.. |+. .-.+.+.+...++-.+|.+++++..+. .+-|......-..-|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 3334444455555555555554443 332 223444444445555555555544421 11122223333333444444
Q ss_pred HHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHH
Q 011378 396 MDKAFALVSKMENQGLVPDV-ITYNVILTGFCRQGRMHDSELILWR 440 (487)
Q Consensus 396 ~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~ 440 (487)
.+.|.++.++..+. .|+. .+|..|...|.+.|+++.|...+..
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 55555544444332 3332 2444444455555555544444443
No 126
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.40 E-value=0.12 Score=48.63 Aligned_cols=441 Identities=16% Similarity=0.211 Sum_probs=220.3
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCChh------hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHH--HH
Q 011378 5 LCKDHKIDSAKMFLCEMEQKGVYPDTV------TYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLING--LC 76 (487)
Q Consensus 5 ~~~~~~~~~a~~~~~~~~~~g~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~ 76 (487)
+-+.+++.++..+|.++-+..- -+++ .-+.++++|-.. +++..........+. .| ...|-.+..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 4578899999999999865431 2222 345566676544 344444444344332 23 3346666665 34
Q ss_pred hcCChhhHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHccCChhHHHHHHHHHHHC----CCCCCHhHH
Q 011378 77 KKGRCDRAKEVLDEMLQM--GLSP------------DTATYNTLLVESCRKENMSEAEEIFCEMSRR----GVAPDIVSF 138 (487)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~--g~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~ 138 (487)
+.+.++.|.+.+....+. +-.| |..-=+....++...|.+.++..+++.|... ...-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 788999999998877655 3222 2222244556677889999999988888653 334688889
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHH
Q 011378 139 STLIGIFSRNGQLDRALMYFREMKS---AGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGL 215 (487)
Q Consensus 139 ~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 215 (487)
+.++-.++|+ +|-++++ ..+-|| |--++-.|-+.=...++.. + ..+.|.......++...
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~~~-Y-----~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQRP-Y-----EKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhhch-H-----HhhCcHHHHHHHHHHHH
Confidence 9888887775 3333332 223332 2233333322111100000 0 00112222222222222
Q ss_pred Hhc--CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CeeehHHHHHHHHcc
Q 011378 216 CRA--KMLTEADDLFNEMLERGVFPDFY-TFTTLIHGHCKDGNMNKALNLFDIMTQKSIKP----DIVTYNTLIDGFCKV 288 (487)
Q Consensus 216 ~~~--~~~~~a~~~~~~m~~~~~~~~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~~li~~~~~~ 288 (487)
.-. ....--.+++..+.+.-+.|+-. ....++..+.. +.+.+..+-+.+....+.+ =+.+|..++....+.
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11122223333334444455432 22333333333 3333333333222211111 123566666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhh-------HHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH---
Q 011378 289 GEMEKANKLWADMISRKISPNYIS-------YGILINGYC----SMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKG--- 354 (487)
Q Consensus 289 g~~~~a~~~~~~m~~~~~~p~~~t-------~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--- 354 (487)
++..+|...+.-...- .|+... -..+-+..+ ..-+..+-+.+|++.....+..-. ..+-|+.+
T Consensus 312 ~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~ 388 (549)
T PF07079_consen 312 VQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKH 388 (549)
T ss_pred HhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHH
Confidence 6666666666544321 122110 011111111 112345566677766655432221 12223322
Q ss_pred HHhcCC-hHHHHHHHHHHHHCCCCC-ChhhHHHHH----HHHhc---cCCHHHHHHHHHHHHhCCCCCCH----hhHHHH
Q 011378 355 YCRSGD-ASKADEFLSKMVSEGVDP-DSISYNTLI----NGFVR---EENMDKAFALVSKMENQGLVPDV----ITYNVI 421 (487)
Q Consensus 355 ~~~~~~-~~~a~~~~~~m~~~g~~p-~~~~~~~li----~~~~~---~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l 421 (487)
+=+.|. -++|.++++...+ +.| |..+-|+.. .+|.. ...+..-.++-+-..+.|+.|-. ..-|.|
T Consensus 389 lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 334444 6777777777664 222 222222221 22221 22344444444555677877743 334555
Q ss_pred HHH--HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 422 LTG--FCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEM 476 (487)
Q Consensus 422 i~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m 476 (487)
.+| +-.+|+++++...-.-+. .+.|++.+|..+--++....++++|-.+++++
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 543 356788888865444443 46788889888888888888899998888754
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.34 E-value=0.012 Score=47.86 Aligned_cols=86 Identities=16% Similarity=0.273 Sum_probs=40.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 011378 353 KGYCRSGDASKADEFLSKMVSEGVDPDS--ISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGR 430 (487)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 430 (487)
+.+...|++++|...|+......-.|+. ...-.|-..+...|++++|...++...... .....+...-+.+.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCC
Confidence 4455556666666666555554422221 122234444555555555555554432221 122233444445555555
Q ss_pred hHHHHHHHHH
Q 011378 431 MHDSELILWR 440 (487)
Q Consensus 431 ~~~a~~~~~~ 440 (487)
+++|...|++
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.094 Score=45.83 Aligned_cols=86 Identities=16% Similarity=0.262 Sum_probs=43.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCC
Q 011378 215 LCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHC----KDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGE 290 (487)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 290 (487)
+.+..+++.|++.+++|.+- -+..|.+-|-.++. -.+.+.+|.-+|++|.+ ...|+..+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcC
Confidence 34445566666666666542 12334433333322 23345566666665543 234445555555555555566
Q ss_pred HHHHHHHHHHHHhC
Q 011378 291 MEKANKLWADMISR 304 (487)
Q Consensus 291 ~~~a~~~~~~m~~~ 304 (487)
+++|..++++....
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 66666666555443
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.33 E-value=0.009 Score=56.66 Aligned_cols=124 Identities=18% Similarity=0.190 Sum_probs=99.5
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011378 278 YNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCR 357 (487)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 357 (487)
..+|++.+...++++.|..+|+++.... |+. ...+...+...++-.+|.++.++.... .+-+....+.-.+.|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 4566677777899999999999998765 554 345788888888889999998888743 24456666666777889
Q ss_pred cCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 358 SGDASKADEFLSKMVSEGVDPDSI-SYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 358 ~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
.++.+.|..+.+++.. ..|+.. +|..|..+|...|+++.|...+..+.-
T Consensus 247 k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999998875 457665 999999999999999999998887753
No 130
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.32 E-value=0.012 Score=47.81 Aligned_cols=126 Identities=13% Similarity=0.131 Sum_probs=88.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH--HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH--hhHHHHH
Q 011378 347 SCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISY--NTLINGFVREENMDKAFALVSKMENQGLVPDV--ITYNVIL 422 (487)
Q Consensus 347 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li 422 (487)
.|..++..+. .++...+...++.+.+..-....... -.+-..+...|++++|...|+...+..-.|+. ...-.|.
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 4555555653 78888888888888875322112222 23447778899999999999999886522221 2344567
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 423 TGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDE 475 (487)
Q Consensus 423 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~ 475 (487)
..+...|++++|...++......+ ....+...-+.|...|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 788899999999999977433332 334566677899999999999998874
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.092 Score=45.54 Aligned_cols=184 Identities=15% Similarity=0.203 Sum_probs=110.2
Q ss_pred HhcCCHHHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCee----ehHHHHHHHH
Q 011378 216 CRAKMLTEADDLFNEMLE---RG-VFPDFYT-FTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIV----TYNTLIDGFC 286 (487)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~---~~-~~~~~~t-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~ 286 (487)
....+.+++.+++.++.. .| ..++.++ |.-++-+....|+.+.|...++.++.+- |... ....++ -
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~l---E 97 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLL---E 97 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHH---H
Confidence 345677778877777753 34 5566554 4555666677777888887777776553 3321 122222 2
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 011378 287 KVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADE 366 (487)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 366 (487)
..|+.++|.+++....... +.|.+++---+...-..|+--+|++-+.+..+. +..|...|.-+-..|...|++++|.-
T Consensus 98 a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 3567777777777766554 345556655555555566666666666655432 45677777777777777777777777
Q ss_pred HHHHHHHCCCCC-ChhhHHHHHHHHhccC---CHHHHHHHHHHHHh
Q 011378 367 FLSKMVSEGVDP-DSISYNTLINGFVREE---NMDKAFALVSKMEN 408 (487)
Q Consensus 367 ~~~~m~~~g~~p-~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~ 408 (487)
+++++.- +.| ++..+..+-+.+...| +++.+.+.+.+-.+
T Consensus 176 ClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 176 CLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 7777764 234 3334445554444333 44555555555443
No 132
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.31 E-value=0.076 Score=45.66 Aligned_cols=154 Identities=7% Similarity=0.057 Sum_probs=94.0
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 011378 283 DGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDAS 362 (487)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 362 (487)
-.|...|+++.+......+.. |. . .+...++.+++...++...... +.|...|..+-..|...|+.+
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
Confidence 557778887775433322111 11 0 1112455566666565554432 456667777777888888888
Q ss_pred HHHHHHHHHHHCCCCC-ChhhHHHHHHH-HhccCC--HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 011378 363 KADEFLSKMVSEGVDP-DSISYNTLING-FVREEN--MDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELIL 438 (487)
Q Consensus 363 ~a~~~~~~m~~~g~~p-~~~~~~~li~~-~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 438 (487)
+|...++...+.. | +...+..+-.+ |...|+ .++|.+++++..+.. .-+...+..+...+.+.|++++|...+
T Consensus 91 ~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 91 NALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888776543 3 44555555554 355565 478888888776643 225566777777778888888888888
Q ss_pred HHHHHcCCCCCHHHH
Q 011378 439 WRMIEKGLNPDRSTY 453 (487)
Q Consensus 439 ~~m~~~g~~p~~~ty 453 (487)
+++.+. ..|+...+
T Consensus 168 ~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 168 QKVLDL-NSPRVNRT 181 (198)
T ss_pred HHHHhh-CCCCccHH
Confidence 887653 23444333
No 133
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.29 E-value=0.071 Score=45.86 Aligned_cols=160 Identities=11% Similarity=0.093 Sum_probs=111.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011378 246 LIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGH 325 (487)
Q Consensus 246 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 325 (487)
-+-.|...|+++......+.+. .|. . .+...++.+++...++..... -+.|...|..|-..|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~----~~~-~-------~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA----DPL-H-------QFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh----Ccc-c-------cccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCC
Confidence 3457889999888644432111 111 1 222366777777777665543 24577789999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCC--hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHH
Q 011378 326 VTEAFRLWYEMVGKGIKPTLVSCNTIIKGY-CRSGD--ASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFAL 402 (487)
Q Consensus 326 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 402 (487)
+++|...++...+.. +-+...+..+-.++ ...|+ .++|.+++++..+..- -+...+..|-..+.+.|++++|...
T Consensus 89 ~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999877653 33566666666664 56676 5899999999887542 2556788888889999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHH
Q 011378 403 VSKMENQGLVPDVITYNVI 421 (487)
Q Consensus 403 ~~~m~~~g~~p~~~~~~~l 421 (487)
++++.+. ..|+..-+..+
T Consensus 167 ~~~aL~l-~~~~~~r~~~i 184 (198)
T PRK10370 167 WQKVLDL-NSPRVNRTQLV 184 (198)
T ss_pred HHHHHhh-CCCCccHHHHH
Confidence 9998765 25555544433
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.25 E-value=0.19 Score=47.80 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=48.5
Q ss_pred ccCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHH
Q 011378 112 RKENMSEAEEIFCEMSRRGVAP-DIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD-NVLYTIIINGYCRNGFVLEA 189 (487)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a 189 (487)
..++.+.|+..++.+... .| |..-+......+.+.++.++|.+.++.+... .|+ ....-.+-++|.+.|+..++
T Consensus 318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 344455555555544332 22 2222223334444555555555555544432 233 23333344444444444444
Q ss_pred HHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011378 190 LKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFN 229 (487)
Q Consensus 190 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 229 (487)
..++...... .+-|+..|..|-.+|...|+..++..-..
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 4444443322 12344444444444444444444444333
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.24 E-value=0.035 Score=52.59 Aligned_cols=108 Identities=14% Similarity=0.172 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCCHHHHHHH
Q 011378 324 GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD-SISYNTLINGFVREENMDKAFAL 402 (487)
Q Consensus 324 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~ 402 (487)
|++++|+..++.+.+. .+-|...+....+.+.+.++.++|.+.++++... .|+ ....-.+-.+|.+.|+..+|...
T Consensus 320 ~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 320 GQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred cccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHH
Confidence 4444444444444332 1222333333344444444444444444444432 233 22233333444444444444444
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 011378 403 VSKMENQGLVPDVITYNVILTGFCRQGRMHDSE 435 (487)
Q Consensus 403 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 435 (487)
++..... .+-|+..|..|..+|...|+..++.
T Consensus 397 L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 397 LNRYLFN-DPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHhhc-CCCCchHHHHHHHHHHHhCchHHHH
Confidence 4443322 1233444444444444444444443
No 136
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.082 Score=51.18 Aligned_cols=216 Identities=15% Similarity=0.123 Sum_probs=93.0
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-ccchHHHHHHHHhcCChhhH
Q 011378 6 CKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPG-VFTYNSLINGLCKKGRCDRA 84 (487)
Q Consensus 6 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a 84 (487)
.+.|++..|.-.|+...+.. +-+...|--|-......++-..|+..+....+ +.|+ ....-+|--.|...|.-..|
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHHH
Confidence 44555555555555544432 11344555555555555555555555544433 2232 23333333344445555555
Q ss_pred HHHHHHHHHCCCC-----C---CHHHHHHHHHHHHccCChhHHHHHHHHH-HHCCCCCCHhHHHHHHHHHHhCCCHHHHH
Q 011378 85 KEVLDEMLQMGLS-----P---DTATYNTLLVESCRKENMSEAEEIFCEM-SRRGVAPDIVSFSTLIGIFSRNGQLDRAL 155 (487)
Q Consensus 85 ~~~~~~m~~~g~~-----~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 155 (487)
.+.++.......+ + +...-+. +.+.....+....++|-++ .+.+..+|....+.|--.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 5555444322100 0 0000000 1111122223333333333 23343344444555555555556666666
Q ss_pred HHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCCh-hhHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 156 MYFREMKSAGLVP-DNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDV-VTYNTILNGLCRAKMLTEADDLFNE 230 (487)
Q Consensus 156 ~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~ 230 (487)
..|+...+. .| |..+||.|=-.++...+.++|..-+.+..+. .|+- ...-.|--+|...|.+++|.+.|-.
T Consensus 451 Dcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 451 DCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 666555442 23 2345555555555555555555555544431 2211 1222233334555555555544443
No 137
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.20 E-value=0.075 Score=52.08 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHh-----------
Q 011378 348 CNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVI----------- 416 (487)
Q Consensus 348 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----------- 416 (487)
...+-.-+.+......|.++|.+|-+ ..++++..+..+++++|..+-++..+ +.||+.
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhh
Confidence 33333334455556667777776653 23456667777777777777666554 344442
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011378 417 TYNVILTGFCRQGRMHDSELILWRMIEKGLN 447 (487)
Q Consensus 417 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 447 (487)
-|.--=.+|.++|+..||.++++++....+.
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnnav~ 849 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNNAVA 849 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhhhhh
Confidence 2334446889999999999999998766554
No 138
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.17 E-value=0.2 Score=46.45 Aligned_cols=125 Identities=15% Similarity=0.185 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011378 311 ISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGF 390 (487)
Q Consensus 311 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 390 (487)
.+.+..|.-|...|+...|.++-.+.. -|+...|..-+++++..+++++...+-.. + -.+.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHH
Confidence 456666777778888888887766652 37777888888888888888876665432 2 2346678888888
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011378 391 VREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHV 461 (487)
Q Consensus 391 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~ 461 (487)
.+.|+..+|..++.++ ++.--+..|.+.|++.+|-+.-.+. -|......+.+.+.
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~------kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE------KDIDLLKQILKRCP 302 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc------CCHHHHHHHHHHCC
Confidence 8888888888887762 2356677788888888886654443 24444444444443
No 139
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.17 E-value=0.14 Score=44.66 Aligned_cols=118 Identities=17% Similarity=0.053 Sum_probs=47.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCC
Q 011378 141 LIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKM 220 (487)
Q Consensus 141 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 220 (487)
......+.|++..|...+.+.... -.+|...|+.+--+|.+.|+.++|..-+.+..+-- .-+...+|.+.-.+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCC
Confidence 444445555555555555544331 12334444444444444444444444333333211 0122233344444444444
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011378 221 LTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALN 261 (487)
Q Consensus 221 ~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~ 261 (487)
++.|..++......+ .-|...-.++..+-...|++++|.+
T Consensus 184 ~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 184 LEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 444444444433321 1133333333334444444444443
No 140
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.13 E-value=0.4 Score=49.55 Aligned_cols=171 Identities=12% Similarity=0.033 Sum_probs=122.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcc
Q 011378 35 TLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDT-ATYNTLLVESCRK 113 (487)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~ 113 (487)
.++....+.....+++--...... ....++..+..|-....+.|.+++|..+++...+. .|+. .....+...+.+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~ 133 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQ 133 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHh
Confidence 355555555555554433333322 23445677888888888999999999999998874 5664 4566677788899
Q ss_pred CChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011378 114 ENMSEAEEIFCEMSRRGVAP-DIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKM 192 (487)
Q Consensus 114 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 192 (487)
+++++|+...++..+.. | +......+-.++.+.|+.++|..+|++....+ .-+..++..+-.++.+.|+.++|...
T Consensus 134 ~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~ 210 (694)
T PRK15179 134 QGIEAGRAEIELYFSGG--SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDV 210 (694)
T ss_pred ccHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999987763 4 44556667778889999999999999998732 22366888888889999999999999
Q ss_pred HHHHHHcCCcCChhhHHHHH
Q 011378 193 RDEMLEKGCVMDVVTYNTIL 212 (487)
Q Consensus 193 ~~~m~~~g~~~~~~~~~~li 212 (487)
|+...+.-- +...-|+..+
T Consensus 211 ~~~a~~~~~-~~~~~~~~~~ 229 (694)
T PRK15179 211 LQAGLDAIG-DGARKLTRRL 229 (694)
T ss_pred HHHHHHhhC-cchHHHHHHH
Confidence 988765321 2334454443
No 141
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.11 E-value=0.013 Score=47.53 Aligned_cols=93 Identities=10% Similarity=-0.079 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHc
Q 011378 208 YNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCK 287 (487)
Q Consensus 208 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 287 (487)
+...-..+.+.|++++|...|+...... +.+...|..+-.++...|++++|...|+...... +.+...+..+-.++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344455556666666666666655432 2345555566666666666666666666555421 2234455555555666
Q ss_pred cCCHHHHHHHHHHHH
Q 011378 288 VGEMEKANKLWADMI 302 (487)
Q Consensus 288 ~g~~~~a~~~~~~m~ 302 (487)
.|+.++|...|....
T Consensus 105 ~g~~~eAi~~~~~Al 119 (144)
T PRK15359 105 MGEPGLAREAFQTAI 119 (144)
T ss_pred cCCHHHHHHHHHHHH
Confidence 666666666665544
No 142
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.08 E-value=0.028 Score=45.55 Aligned_cols=92 Identities=11% Similarity=-0.092 Sum_probs=52.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 011378 350 TIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQG 429 (487)
Q Consensus 350 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 429 (487)
.+-.++...|++++|...++...... +.+...|..+-.++.+.|++++|...+++..... ..+...+..+-..+.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34445555666666666666655322 1234455566666666666666666666655432 224455555656666666
Q ss_pred ChHHHHHHHHHHHH
Q 011378 430 RMHDSELILWRMIE 443 (487)
Q Consensus 430 ~~~~a~~~~~~m~~ 443 (487)
+.++|...|++...
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666544
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.07 E-value=0.028 Score=44.93 Aligned_cols=91 Identities=12% Similarity=0.015 Sum_probs=44.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 011378 351 IIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGR 430 (487)
Q Consensus 351 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 430 (487)
+...+...|+.++|.+.++.....+ +.+...+..+-..|.+.|++++|...++...+.+ ..+...+..+-..+...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 3344445555555555555544432 1233444445555555555555555555443332 2233444444445555555
Q ss_pred hHHHHHHHHHHHH
Q 011378 431 MHDSELILWRMIE 443 (487)
Q Consensus 431 ~~~a~~~~~~m~~ 443 (487)
.++|...+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 144
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.01 E-value=0.033 Score=44.48 Aligned_cols=94 Identities=10% Similarity=-0.011 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 011378 313 YGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVR 392 (487)
Q Consensus 313 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 392 (487)
...+...+...|++++|...|+.....+ +.+...+..+-..+...|+.+.|...++...+.+ +.+...+..+-..|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3344455555666666666666554432 2344555555556666666666666666554432 2233444445555666
Q ss_pred cCCHHHHHHHHHHHHh
Q 011378 393 EENMDKAFALVSKMEN 408 (487)
Q Consensus 393 ~~~~~~a~~~~~~m~~ 408 (487)
.|+.++|...+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666655544
No 145
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.99 E-value=0.3 Score=45.32 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=57.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHH
Q 011378 207 TYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFC 286 (487)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 286 (487)
+.+..|.-+...|....|.++-++.. .||-.-|-..|.+++..+++++-..+-.. +-++.-|-.++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44445555555666666655544431 25555666666666666666655443221 112345666666666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011378 287 KVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRL 332 (487)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~ 332 (487)
+.|+.++|..+... .++.--+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHH
Confidence 66666666655543 1223445556666666666554
No 146
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.34 Score=45.17 Aligned_cols=257 Identities=18% Similarity=0.126 Sum_probs=118.4
Q ss_pred CCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhH
Q 011378 133 PDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNV----LYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTY 208 (487)
Q Consensus 133 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 208 (487)
-|+.-...+-..+...|+.+.|...|++.... .|+.. .|..|+ .+.|+.++...+...+.... ..+...|
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL---~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLL---GQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHH---HhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 34555555666666666666666666655432 23322 233322 34455555555444443321 0111222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCC-CeeehHHHHHH
Q 011378 209 NTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLI---HGHCKDGNMNKALNLFDIMTQKSIKP-DIVTYNTLIDG 284 (487)
Q Consensus 209 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~ 284 (487)
-.-.+.....++++.|..+-++..+. |+.....+| ..+...++++.|.-.|+... .+.| +..+|..|+.+
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~----~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq--~Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDS----EPRNHEALILKGRLLIALERHTQAVIAFRTAQ--MLAPYRLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhcc----CcccchHHHhccHHHHhccchHHHHHHHHHHH--hcchhhHHHHHHHHHH
Confidence 22223333445555555555544332 111111111 34445566666665555432 2222 44566666666
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCChhhHHHHH-HHHHh-cCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCh
Q 011378 285 FCKVGEMEKANKLWADMISRKISPNYISYGILI-NGYCS-MGHVTEAFRLWYEMVGKGIKPTL-VSCNTIIKGYCRSGDA 361 (487)
Q Consensus 285 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li-~~~~~-~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~ 361 (487)
|...|++.+|..+-+...+. ++-+..+.+.+- ..|.. ...-++|.++++.-. .++|+- ...+.+-.-|...|..
T Consensus 378 YLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L--~~~P~Y~~AV~~~AEL~~~Eg~~ 454 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL--KINPIYTPAVNLIAELCQVEGPT 454 (564)
T ss_pred HHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh--ccCCccHHHHHHHHHHHHhhCcc
Confidence 66666666655544433221 112333332221 11211 112344555444322 223432 2344455555566666
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 011378 362 SKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKM 406 (487)
Q Consensus 362 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 406 (487)
+.+..+++.-.. ..||....+.|-+.+.....+.+|...|..-
T Consensus 455 ~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 455 KDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred chHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 666666655442 3466666666666666666666666555443
No 147
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.93 E-value=0.028 Score=51.32 Aligned_cols=129 Identities=9% Similarity=0.094 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011378 347 SCNTIIKGYCRSGDASKADEFLSKMVSEG-VDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGF 425 (487)
Q Consensus 347 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (487)
+|..+++...|.+..+.|..+|....+.+ ...++....+++..+ ..++.+.|.++|+...+. +..+...|..-++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555666666666555332 233444444444322 234445566666655432 233445556666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 426 CRQGRMHDSELILWRMIEKGLNP---DRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 478 (487)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~g~~p---~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~ 478 (487)
.+.|+.+.|+.+|++.... +.+ ....|..+++--...|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665433 211 123666666666666666666666655543
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.76 E-value=0.031 Score=40.69 Aligned_cols=89 Identities=13% Similarity=0.134 Sum_probs=41.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011378 387 INGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNL 466 (487)
Q Consensus 387 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~ 466 (487)
...+...|++++|...+++..+.. ..+...+..+...+...|++++|...+++...... .+...+..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhH
Confidence 334444555555555555443321 11223344444455555555555555555443221 1223444555555555555
Q ss_pred HHHHHHHHHHH
Q 011378 467 KEAFRFHDEML 477 (487)
Q Consensus 467 ~~a~~~~~~m~ 477 (487)
+.|...+.+..
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T cd00189 85 EEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 149
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.75 Score=46.29 Aligned_cols=323 Identities=12% Similarity=0.120 Sum_probs=190.6
Q ss_pred HCCCCCCHhHHH-----HHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH--HHHHHHHHHHHHcC
Q 011378 128 RRGVAPDIVSFS-----TLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFV--LEALKMRDEMLEKG 200 (487)
Q Consensus 128 ~~g~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~g 200 (487)
.-|+..+..-|. .+|.-+...+.+..|.++-..+...-..- ..+|.....-+.+..+. +++++-.++-.+.-
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 356666666555 36778888899999999888875422222 45566666666665433 23333333222222
Q ss_pred CcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----
Q 011378 201 CVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGV----FPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSI----- 271 (487)
Q Consensus 201 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~----- 271 (487)
. -+..+|..+..-....|+.+.|..+.+.=...+- ..+..-+...+.-+..+|+.+....++-.+.++-.
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 2 4456788888888899999999988764222211 11333466777788888998888887765544211
Q ss_pred -----CC-CeeehHHHHHH--------HHccCCHHHHHHHHH--HHH----hCCCCCChhhHHHHHHHHHhcCC------
Q 011378 272 -----KP-DIVTYNTLIDG--------FCKVGEMEKANKLWA--DMI----SRKISPNYISYGILINGYCSMGH------ 325 (487)
Q Consensus 272 -----~~-~~~~~~~li~~--------~~~~g~~~~a~~~~~--~m~----~~~~~p~~~t~~~li~~~~~~~~------ 325 (487)
.| ....|.-+++- +...++-..+...|. ... -.+..|+..+ .-++|++...
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~---~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKT---AANAFAKSKEKSFEAK 659 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHH---HHHHHhhhhhhhhHHH
Confidence 11 12222222220 111111111111111 000 0123333332 3334443332
Q ss_pred -HHHHHHHHH---HHH-hCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHH
Q 011378 326 -VTEAFRLWY---EMV-GKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAF 400 (487)
Q Consensus 326 -~~~a~~~~~---~m~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 400 (487)
.++-.+++. .+. +.|..-.--+.+--+.-+...|+..+|.++-++.+ -||...|-.=+.+++..+++++-+
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 112222222 221 12333333455666677778899999988887665 489889988999999999999876
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011378 401 ALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHD 474 (487)
Q Consensus 401 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~ 474 (487)
++-++++ ++.-|-..+.+|.++|+.++|.+++-+.. +. ...+.+|++.|++.+|.+.--
T Consensus 736 kfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~------~l---~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 736 KFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG------GL---QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC------Ch---HHHHHHHHHhccHHHHHHHHH
Confidence 6555443 25568888999999999999998877641 21 268899999999999987643
No 150
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.74 E-value=0.033 Score=50.93 Aligned_cols=129 Identities=12% Similarity=0.147 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011378 32 TYNTLINAYCREGFLEEAFQLMNSMSGKG-LKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVES 110 (487)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 110 (487)
+|..+|+..-+.+.++.|..+|......+ +........++|.. .-.++.+.|.++|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45566666666666666666666655321 11222222222221 1134555566666665432 233445555555555
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 011378 111 CRKENMSEAEEIFCEMSRRGVAPDI---VSFSTLIGIFSRNGQLDRALMYFREMKS 163 (487)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~ 163 (487)
.+.++.+.|..+|+..... +.++. ..|...+..=.+.|+++.+.++...+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666666655433 22211 2555555555555666666555555544
No 151
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.69 E-value=0.024 Score=44.37 Aligned_cols=49 Identities=22% Similarity=0.284 Sum_probs=24.5
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCcCChhhHHHHHHH
Q 011378 166 LVPDNVLYTIIINGYCRNGFVLEALKMRDEMLE-KGCVMDVVTYNTILNG 214 (487)
Q Consensus 166 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~ 214 (487)
+.|+..+..+++.+|+.++++..|.++++...+ .+++.+..+|..|++-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 445555555555555555555555555554432 2444444455554443
No 152
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.66 E-value=0.82 Score=45.64 Aligned_cols=64 Identities=9% Similarity=0.203 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 380 SISYNTLINGFVREENMDKAFALVSKMEN-QGLVPDVITYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 380 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
...|-+|..--...|.++.|...--.+.+ ..+-|....|+.|.-+-|....+....+.|-++..
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 45566666666777888888776555543 24567777787777666666666666666665543
No 153
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.61 E-value=0.031 Score=43.78 Aligned_cols=96 Identities=15% Similarity=0.165 Sum_probs=68.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011378 344 TLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILT 423 (487)
Q Consensus 344 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (487)
|..++..+|.++++.|+++....+++..= |+.++.. ...+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 44567778888888888877777765332 4433321 00010 1134567899999999999
Q ss_pred HHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHH
Q 011378 424 GFCRQGRMHDSELILWRMIE-KGLNPDRSTYTTLING 459 (487)
Q Consensus 424 ~~~~~g~~~~a~~~~~~m~~-~g~~p~~~ty~~l~~~ 459 (487)
+|+..|++..|.++++.... -++..+..+|..|+.=
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999764 5788888999999873
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.57 E-value=0.05 Score=39.54 Aligned_cols=89 Identities=13% Similarity=0.184 Sum_probs=42.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 011378 352 IKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRM 431 (487)
Q Consensus 352 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 431 (487)
...+...|+.++|...++...+.. +.+...+..+...+...+++++|.+.+++..... ..+...+..+...+...|+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 334444555555555555544321 1122334444445555555555555555544332 12223455555555556666
Q ss_pred HHHHHHHHHHH
Q 011378 432 HDSELILWRMI 442 (487)
Q Consensus 432 ~~a~~~~~~m~ 442 (487)
++|...+.+..
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T cd00189 85 EEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHH
Confidence 66655555543
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.55 E-value=0.094 Score=40.55 Aligned_cols=94 Identities=10% Similarity=0.015 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHhCC--CCCCHhhHHHHH
Q 011378 349 NTIIKGYCRSGDASKADEFLSKMVSEGVDPD----SISYNTLINGFVREENMDKAFALVSKMENQG--LVPDVITYNVIL 422 (487)
Q Consensus 349 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li 422 (487)
-.+...+.+.|+.++|...++.+.... |+ ...+..+...+.+.|+++.|...++...... .......+..+.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666666666666665432 21 2234445555666666666666666554321 011123344455
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 011378 423 TGFCRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 423 ~~~~~~g~~~~a~~~~~~m~~~ 444 (487)
..+.+.|+.++|...+.++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555666666666666665544
No 156
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.54 E-value=0.84 Score=44.25 Aligned_cols=120 Identities=16% Similarity=0.214 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHC-CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChHHHHHHH
Q 011378 361 ASKADEFLSKMVSE-GVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELIL 438 (487)
Q Consensus 361 ~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 438 (487)
.+.....+++.... .++|+ .+|..+|..--+..-++.|..+|.+..+.+..+ ++..+++++..+|.. +...|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk-D~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK-DKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC-ChhHHHHHH
Confidence 44455566665543 34454 468888888888889999999999999988888 889999999999876 568898888
Q ss_pred HH-HHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC
Q 011378 439 WR-MIEKGLNPDRSTY-TTLINGHVSQNNLKEAFRFHDEMLQRGFVPDD 485 (487)
Q Consensus 439 ~~-m~~~g~~p~~~ty-~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 485 (487)
+- |+.. +|..-| ...++-+..-++=..+..+|++.+..++.||.
T Consensus 425 eLGLkkf---~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 425 ELGLKKF---GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred HHHHHhc---CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 75 3333 444433 44566667778888888888888888777765
No 157
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.48 Score=41.29 Aligned_cols=185 Identities=15% Similarity=0.123 Sum_probs=100.6
Q ss_pred cCCHHHHHHHHHHHHH---cC-CcCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCH
Q 011378 183 NGFVLEALKMRDEMLE---KG-CVMDVV-TYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIH-GHCKDGNM 256 (487)
Q Consensus 183 ~~~~~~a~~~~~~m~~---~g-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~-~~~~~g~~ 256 (487)
..+.++..+++.++.. .| ..++.. .|.-++-+....+..+.|...++.+.++= |.+.-...|=. .+-..|+.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 3456666666666653 23 333332 34455556666777777777777766542 44332222211 13345677
Q ss_pred HHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 257 NKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEM 336 (487)
Q Consensus 257 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 336 (487)
++|+++++...+.. +.|..++-.=+-.....|..-+|++-+.+-.+ .+.-|...|.-+-..|...|++++|.--++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 77777777666554 33444554444444445555555555544433 34457777777777777777777777777776
Q ss_pred HhCCCCCChhh-HHHHHHHH---HhcCChHHHHHHHHHHHH
Q 011378 337 VGKGIKPTLVS-CNTIIKGY---CRSGDASKADEFLSKMVS 373 (487)
Q Consensus 337 ~~~~~~~~~~~-~~~li~~~---~~~~~~~~a~~~~~~m~~ 373 (487)
.-. .|-... +-.+-..+ ....+.+.+...+....+
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 543 333322 22222222 223345556666665554
No 158
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.47 E-value=0.67 Score=42.22 Aligned_cols=83 Identities=11% Similarity=0.213 Sum_probs=55.2
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC--H---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 011378 392 REENMDKAFALVSKMENQGLVPD--V---ITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLINGHVSQNN 465 (487)
Q Consensus 392 ~~~~~~~a~~~~~~m~~~g~~p~--~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~l~~~~~~~~~ 465 (487)
+.+++.++.+--++..+. .|. . ..+.++-..+...|++.+|.+...+.++ +.|+ ..++--=-.+|.-...
T Consensus 281 e~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred hhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHH
Confidence 345555555544443332 343 2 2344555566788899999988888764 5666 6677777789998899
Q ss_pred HHHHHHHHHHHHH
Q 011378 466 LKEAFRFHDEMLQ 478 (487)
Q Consensus 466 ~~~a~~~~~~m~~ 478 (487)
|++|+.=++.-++
T Consensus 357 YD~AI~dye~A~e 369 (504)
T KOG0624|consen 357 YDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888887654
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.39 E-value=0.2 Score=38.68 Aligned_cols=94 Identities=11% Similarity=0.000 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CcCChhhHHHHHHHH
Q 011378 140 TLIGIFSRNGQLDRALMYFREMKSAGLV-P-DNVLYTIIINGYCRNGFVLEALKMRDEMLEKG--CVMDVVTYNTILNGL 215 (487)
Q Consensus 140 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~ 215 (487)
.+...+.+.|++++|.+.|+++.+.... + ....+..+...+.+.|+.++|...++...... .+.....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444445555555555544432100 0 01223334444444444444444444443321 111122333334444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 011378 216 CRAKMLTEADDLFNEMLE 233 (487)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~ 233 (487)
.+.++.+.|...+++..+
T Consensus 87 ~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHhCChHHHHHHHHHHHH
Confidence 444555555555544444
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.37 E-value=0.0071 Score=43.81 Aligned_cols=18 Identities=11% Similarity=0.361 Sum_probs=7.4
Q ss_pred HHHHhccCCHHHHHHHHH
Q 011378 387 INGFVREENMDKAFALVS 404 (487)
Q Consensus 387 i~~~~~~~~~~~a~~~~~ 404 (487)
-.+|.+.|++++|..+++
T Consensus 32 a~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 333444444444444443
No 161
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.37 E-value=0.039 Score=48.42 Aligned_cols=104 Identities=16% Similarity=0.234 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHH-----ccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhh
Q 011378 98 PDTATYNTLLVESC-----RKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVL 172 (487)
Q Consensus 98 ~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 172 (487)
.|..+|-..+..+. +.+.++-.-.-+..|++.|+.-|..+|+.||+.+-+-.-+.. ...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~----------------nvf 128 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ----------------NVF 128 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH----------------HHH
Confidence 45555555555443 235666666677888888888888889888888765433221 100
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCC
Q 011378 173 YTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKM 220 (487)
Q Consensus 173 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 220 (487)
-..++ .| -..-+-+..++++|+..|+.||-.+-..|++++++.+-
T Consensus 129 Q~~F~-HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFL-HY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHh-hC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 00000 01 11223345566666666666666666666666666553
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.33 E-value=0.42 Score=40.05 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 313 YGILINGYCSMGHVTEAFRLWYEMVGKGIKPT--LVSCNTIIKGYCRSGDASKADEFLSKMVS 373 (487)
Q Consensus 313 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (487)
+..+...+...|++++|...|++..+....++ ...+..+-..+.+.|+.++|...+++..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444555555666666666655544322221 23444455555555555555555555443
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.29 E-value=0.0098 Score=43.04 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 011378 393 EENMDKAFALVSKMENQGL-VPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR-STYTTLINGHVSQNNLKEAF 470 (487)
Q Consensus 393 ~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ty~~l~~~~~~~~~~~~a~ 470 (487)
.|+++.|..+++++.+..- .|+...+-.+...|.+.|++++|..++++ . ++.|+. ...-.+..+|...|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4788999999999876421 22444555588899999999999999988 2 223333 33334578899999999999
Q ss_pred HHHHH
Q 011378 471 RFHDE 475 (487)
Q Consensus 471 ~~~~~ 475 (487)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
No 164
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.29 E-value=0.038 Score=48.51 Aligned_cols=105 Identities=14% Similarity=0.218 Sum_probs=64.4
Q ss_pred CCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 011378 307 SPNYISYGILINGYCS-----MGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSI 381 (487)
Q Consensus 307 ~p~~~t~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 381 (487)
.-|-.+|-..+..|.. .++++-....++.|...|++.|+.+|+.||..+-+..- .|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH
Confidence 4455667677776654 35677777777888888888888888888877654321 12111
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 011378 382 SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGR 430 (487)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 430 (487)
.-..++ .|= .+-+-+.++++.|+..|+-||-.+--.++.+|++.+.
T Consensus 128 fQ~~F~-HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFL-HYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHh-hCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111 111 2234466777777777777777777777777766654
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.21 E-value=0.96 Score=41.43 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=13.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Q 011378 139 STLIGIFSRNGQLDRALMYFREM 161 (487)
Q Consensus 139 ~~li~~~~~~g~~~~a~~~~~~m 161 (487)
.-.-+.|-..|++++|.+.|.+.
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHH
Confidence 33445566666777666666654
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.16 E-value=0.1 Score=43.59 Aligned_cols=63 Identities=19% Similarity=0.090 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--CccchHHHHHHHHhcCChhhHHHHHHHHHH
Q 011378 31 VTYNTLINAYCREGFLEEAFQLMNSMSGKGLKP--GVFTYNSLINGLCKKGRCDRAKEVLDEMLQ 93 (487)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (487)
..|..+...+...|++++|...|+......-.| ...+|..+-..+...|++++|.+.++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555566666666655543321111 112444444555555555555555555443
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.07 E-value=0.17 Score=42.31 Aligned_cols=26 Identities=15% Similarity=-0.068 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 207 TYNTILNGLCRAKMLTEADDLFNEML 232 (487)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~ 232 (487)
+|..+-..+...|++++|...++...
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444455555555555554444
No 168
>PLN02789 farnesyltranstransferase
Probab=95.98 E-value=1.4 Score=41.11 Aligned_cols=132 Identities=11% Similarity=0.108 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHcc---CC----HHHH
Q 011378 222 TEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKV---GE----MEKA 294 (487)
Q Consensus 222 ~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~----~~~a 294 (487)
+.+..+++++.+.. +-|...|+..--++...|+++++++.++.+.+.... |...|+.....+.+. |. .+++
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 34445555554432 124445555555555555566666666655544322 222333332222222 11 2234
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011378 295 NKLWADMISRKISPNYISYGILINGYCSM----GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCR 357 (487)
Q Consensus 295 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 357 (487)
.....+.... -+-|...|+.+-..+... +...+|...+.+....+ ..+......|++.|+.
T Consensus 203 l~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4444333322 123555666666665552 23344666665544422 2234455566666654
No 169
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=1.7 Score=42.11 Aligned_cols=236 Identities=14% Similarity=0.144 Sum_probs=123.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHH-------
Q 011378 208 YNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNT------- 280 (487)
Q Consensus 208 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~------- 280 (487)
+-.+.++..+..+++.+.+-+....+.. -+..-++..-.+|...|....+...-+...+.|... ..-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHHH
Confidence 3456666677778888888777776644 344445555667777777666655544433333211 111221
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcC
Q 011378 281 LIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVS-CNTIIKGYCRSG 359 (487)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~~ 359 (487)
+=.+|.+.++.+.+...|.+.......|+..+ +....+++.+...... -+.|.... .-.=-..+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a--~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA--YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH--hhChhHHHHHHHHHHHHHhcc
Confidence 22356666788888888887766665555433 1222333333333221 12222211 001123455677
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCChHHHHHHH
Q 011378 360 DASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVI-TYNVILTGFCRQGRMHDSELIL 438 (487)
Q Consensus 360 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~ 438 (487)
++..|...+.+++... +-|...|+..--+|.+.+.+..|.+=.+.-.+. .|+-. -|..=..++....+++.|...|
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777655 345667777777777777777776654443332 33321 1211112222233555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh
Q 011378 439 WRMIEKGLNPDRSTYTTLINGHVS 462 (487)
Q Consensus 439 ~~m~~~g~~p~~~ty~~l~~~~~~ 462 (487)
++-++. .|+..-+..-+.-|..
T Consensus 450 ~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 450 QEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHhc--CchhHHHHHHHHHHHH
Confidence 554432 3554444444444444
No 170
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.84 E-value=0.65 Score=42.59 Aligned_cols=22 Identities=9% Similarity=0.386 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHcCCcCChhhHH
Q 011378 188 EALKMRDEMLEKGCVMDVVTYN 209 (487)
Q Consensus 188 ~a~~~~~~m~~~g~~~~~~~~~ 209 (487)
.+.++++.+.+.|+++....|.
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHcCCcccccccc
Confidence 3444455555555554444443
No 171
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.82 E-value=0.44 Score=38.63 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCC
Q 011378 417 TYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEML-----QRGFVPDD 485 (487)
Q Consensus 417 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~-----~~g~~p~~ 485 (487)
....++..+...|++++|..+++.+.... .-+...|..+|.+|...|+...|.++++++. +-|+.|++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 34455555666666666666666665431 1245566666666666666666666666654 23666653
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.76 E-value=0.5 Score=46.66 Aligned_cols=211 Identities=14% Similarity=0.181 Sum_probs=104.7
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHH---------HHHHhhCCCCCCccchHHHHHHHHhcCChhhH--HHHHHHHHHCC
Q 011378 27 YPDTVTYNTLINAYCREGFLEEAFQL---------MNSMSGKGLKPGVFTYNSLINGLCKKGRCDRA--KEVLDEMLQMG 95 (487)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~a~~~---------~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a--~~~~~~m~~~g 95 (487)
.|....+.+-+..+...|.+++|.++ |+.+... ..+.-.++..=++|.+.++..-- ..=+++|++.|
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 34445566667777788888887654 2222111 01223344444556665554422 22334566777
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHH------------HHHH
Q 011378 96 LSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFR------------EMKS 163 (487)
Q Consensus 96 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~------------~m~~ 163 (487)
-.|+.... ...++-.|++.+|.++|.+- |.. |-.++.|..-+.+|.|-+++. +-.+
T Consensus 631 e~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~ 698 (1081)
T KOG1538|consen 631 ETPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD 698 (1081)
T ss_pred CCchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 77776542 23345566677777776532 211 223444444444444433322 1100
Q ss_pred --CCC-CCChhhHHHHHHHHHhcCCHHHHHHHH------HHHHHcCCcCC---hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 164 --AGL-VPDNVLYTIIINGYCRNGFVLEALKMR------DEMLEKGCVMD---VVTYNTILNGLCRAKMLTEADDLFNEM 231 (487)
Q Consensus 164 --~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~------~~m~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m 231 (487)
.++ +| .+....+...|+..+|..+. +-+.+-+-..| ..+.-.+-..+-+...+..|-++|..|
T Consensus 699 WAr~~keP-----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 699 WARNIKEP-----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred HhhhcCCc-----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 011 11 12233344456666665442 12222222232 233333444445556677778888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 232 LERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDI 265 (487)
Q Consensus 232 ~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~ 265 (487)
-+. .+++......+++++|..+-+.
T Consensus 774 gD~---------ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 774 GDL---------KSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred ccH---------HHHhhheeecccchHhHhhhhh
Confidence 542 3566677778888888776654
No 173
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.75 E-value=3 Score=43.18 Aligned_cols=223 Identities=18% Similarity=0.168 Sum_probs=141.4
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHH--HhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhh
Q 011378 6 CKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAY--CREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDR 83 (487)
Q Consensus 6 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 83 (487)
...+++..|..-.+.+.+.- |+. .|.-+++++ .+.|..++|..+++....-+.. |..|...+-..|-+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 34677888888887764431 332 455666665 5688999999888887654433 66778888888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCC----------HHH
Q 011378 84 AKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQ----------LDR 153 (487)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~ 153 (487)
+..++++..+. -|+..-..-+.-+|++.+++..-.++=-+|-+ ..+-+...|-++++...+.-. +..
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999987754 57777777778888888776655544333322 123345566667766654321 224
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 154 ALMYFREMKSAGLVPD-NVLYTIIINGYCRNGFVLEALKMRD-EMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEM 231 (487)
Q Consensus 154 a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~-~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 231 (487)
|.+.++.+...+-+.. ..-.-.-+..+-..|..++|.+++. ..-+.-...+...-+--+..+...+.+.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 5555555544331211 1111222233345677888888873 3333333444555566777788888888888888888
Q ss_pred HHcC
Q 011378 232 LERG 235 (487)
Q Consensus 232 ~~~~ 235 (487)
..+|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 7765
No 174
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=1.1 Score=39.31 Aligned_cols=139 Identities=9% Similarity=0.025 Sum_probs=66.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-----HHHH
Q 011378 279 NTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCN-----TIIK 353 (487)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-----~li~ 353 (487)
+.++..+.-.|.+.-...++.+..+..-+-+....+.|.+.-.+.|+.+.|...|++..+..-+.|-.+++ ..-.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 45555555555555556666555554433444555555555566666666666666554322222222222 2223
Q ss_pred HHHhcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 011378 354 GYCRSGDASKADEFLSKMVSEG-VDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVI 421 (487)
Q Consensus 354 ~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 421 (487)
.|..+.++..|...+.+..... -.|-...-.+|+..| .|+..+|.+.++.|... .|...+-+++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 3444555555555555544321 111122222333333 45556666666665543 3444444433
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.73 E-value=0.92 Score=45.33 Aligned_cols=143 Identities=11% Similarity=0.094 Sum_probs=78.0
Q ss_pred CCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhc--------CChHHHHHHHHH
Q 011378 305 KISPNYISYGILINGYCSMG-----HVTEAFRLWYEMVGKGIKPTL-VSCNTIIKGYCRS--------GDASKADEFLSK 370 (487)
Q Consensus 305 ~~~p~~~t~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~--------~~~~~a~~~~~~ 370 (487)
+.+.+...|...+.+..... +...|..+|++.... .|+- ..|..+..++... .+...+.+..+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34455566666666644322 255666666665543 3442 2233222222211 112233333333
Q ss_pred HHHC-CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011378 371 MVSE-GVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD 449 (487)
Q Consensus 371 m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 449 (487)
.... ....+...|.++--.....|++++|...+++..+. .|+...|..+-..+...|+.++|...+++... +.|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 2222 12234456666655555667888888888777664 36777777777777888888888777777544 3455
Q ss_pred HHHH
Q 011378 450 RSTY 453 (487)
Q Consensus 450 ~~ty 453 (487)
.+||
T Consensus 486 ~pt~ 489 (517)
T PRK10153 486 ENTL 489 (517)
T ss_pred CchH
Confidence 5554
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.69 E-value=1.7 Score=39.86 Aligned_cols=110 Identities=21% Similarity=0.252 Sum_probs=54.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHcc-CCHHHHHHHHHHHHh----CCCCCC--hhhHHHHHHH
Q 011378 247 IHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKV-GEMEKANKLWADMIS----RKISPN--YISYGILING 319 (487)
Q Consensus 247 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~~~~p~--~~t~~~li~~ 319 (487)
+..|...|++..|-+.+.. +-..|-.. |+++.|.+.|.+... .+ .+. ...+..+...
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 3455555665555444433 23334444 566666666655432 12 111 1234555666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChh-------hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 320 YCSMGHVTEAFRLWYEMVGKGIKPTLV-------SCNTIIKGYCRSGDASKADEFLSKMVS 373 (487)
Q Consensus 320 ~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (487)
+.+.|++++|..+|+++.......+.. .+.++| ++...||...|.+.+++...
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Confidence 777777777777777766543332221 122222 44456677777777776653
No 177
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.68 E-value=3.4 Score=43.39 Aligned_cols=421 Identities=14% Similarity=0.087 Sum_probs=214.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHH--HH
Q 011378 32 TYNTLINAYCREGFLEEAFQLMNSMSGKGLKP-GVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTL--LV 108 (487)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l--l~ 108 (487)
.|..+-.-|+...+...|.+.|+...+- -| +...+....+.+++..+++.|..+.-.--+... .-...+|-+ --
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~-a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP-AFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch-HHHHHhhhhhccc
Confidence 4666666666666677777777765442 22 345577778888888888888887433222210 111122222 22
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH--HHhcCC
Q 011378 109 ESCRKENMSEAEEIFCEMSRRGVAP-DIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIING--YCRNGF 185 (487)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~ 185 (487)
.|-..+++..+..-|+...+- .| |...|..+..+|.++|++..|.++|.+.... .|+ .+|...-.+ -+..|.
T Consensus 571 yyLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGK 645 (1238)
T ss_pred cccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhh
Confidence 355667777777777766543 33 5567788899999999999999999877553 343 244433332 355677
Q ss_pred HHHHHHHHHHHHHc------CCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-C---
Q 011378 186 VLEALKMRDEMLEK------GCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDG-N--- 255 (487)
Q Consensus 186 ~~~a~~~~~~m~~~------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g-~--- 255 (487)
..+++..+...... +..--..++-.+...+...|-...+..++++-.+. ..+++++..+... .
T Consensus 646 Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~-------f~~~l~h~~~~~~~~Wi~ 718 (1238)
T KOG1127|consen 646 YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES-------FIVSLIHSLQSDRLQWIV 718 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------HHHHHHHhhhhhHHHHHH
Confidence 77777666544321 11111112222222233333344444444443321 1112222211110 0
Q ss_pred HHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCH---H---HHHHHHHHHHhCCCCCChhhHHHHHHHHHh----c--
Q 011378 256 MNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEM---E---KANKLWADMISRKISPNYISYGILINGYCS----M-- 323 (487)
Q Consensus 256 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~---~a~~~~~~m~~~~~~p~~~t~~~li~~~~~----~-- 323 (487)
...|..+|-... .+ .|+......|..-+-+.+.. | .+.+.+- ....+..+..+|..|...|.+ .
T Consensus 719 asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~--~hlsl~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 719 ASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGI--AHLSLAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred HhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhh--HHHHHhhccchHHHHhHHHHHHHHHcCC
Confidence 112222222222 11 22222222222212222222 1 0111110 011122334556555555544 1
Q ss_pred CC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHH
Q 011378 324 GH--VTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFA 401 (487)
Q Consensus 324 ~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 401 (487)
+. ...|..-+..-++ +..|...+-..+.+....|++.-+...|-+-.... +....+|..+--.|.+..+++.|..
T Consensus 795 t~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVS--LCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred cchhHHHHHHHHHHHHH--HhhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhH
Confidence 22 2234444433322 23344444444555566677777777665544322 2234567777777888899999999
Q ss_pred HHHHHHhCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 402 LVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMI----EKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEM 476 (487)
Q Consensus 402 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m 476 (487)
.|.+... +.| +...|-....--...|+.-++..+|.+-. ..|-.|+..-|-+-.......|+.++-+..-+..
T Consensus 872 af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 872 AFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 9988765 345 44556555544556788888888887732 2344566666666666666677766555444433
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.66 E-value=0.56 Score=39.30 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--ccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHHHHHHH
Q 011378 31 VTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPG--VFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSP-DTATYNTLL 107 (487)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll 107 (487)
..+..+...+...|++++|...|+........+. ...|..+-..+.+.|+++.|...+.+..+. .| +...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 3466666677777888888888877654322221 245666666777778888888877776653 23 234444444
Q ss_pred HHHHccCChhH
Q 011378 108 VESCRKENMSE 118 (487)
Q Consensus 108 ~~~~~~~~~~~ 118 (487)
..+...|+...
T Consensus 114 ~~~~~~g~~~~ 124 (172)
T PRK02603 114 VIYHKRGEKAE 124 (172)
T ss_pred HHHHHcCChHh
Confidence 55555555433
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.51 E-value=0.86 Score=35.36 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=63.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HhhH-HHHHHHHHh
Q 011378 354 GYCRSGDASKADEFLSKMVSEGVDPDS--ISYNTLINGFVREENMDKAFALVSKMENQGLVPD---VITY-NVILTGFCR 427 (487)
Q Consensus 354 ~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~-~~li~~~~~ 427 (487)
++-..|+.++|..+++.....|...+. ..+-.+-+.+-..|++++|..++++.... .|+ .... ..+..++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHH
Confidence 455668888888888888777765542 24555667777788888888888776543 244 2121 222335667
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011378 428 QGRMHDSELILWRMIEKGLNPDRSTYTTLINGHV 461 (487)
Q Consensus 428 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~ 461 (487)
.|+.++|...+-.... ++...|..=|..|.
T Consensus 88 ~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred CCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 7888888776655443 34445555555554
No 180
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.49 E-value=0.54 Score=37.78 Aligned_cols=126 Identities=9% Similarity=0.099 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 011378 313 YGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVR 392 (487)
Q Consensus 313 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 392 (487)
...++..+...+........++.+...+ ..+....+.++..|++.+. +...+.++. .++.......+..|-+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3455666666666666666666666554 3455566666666665432 233333331 1223333445555656
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011378 393 EENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQ-GRMHDSELILWRMIEKGLNPDRSTYTTLINGHV 461 (487)
Q Consensus 393 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~ 461 (487)
.+.++.+..++.++.. |.-.+..+.+. ++++.|.+.+.+ .-+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 6666666555555421 22233333333 555555555443 124445555555444
No 181
>PLN02789 farnesyltranstransferase
Probab=95.48 E-value=2.2 Score=39.79 Aligned_cols=204 Identities=11% Similarity=0.114 Sum_probs=96.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCC--H
Q 011378 216 CRAKMLTEADDLFNEMLERGVFPDF-YTFTTLIHGHCKDG-NMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGE--M 291 (487)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~~~~-~t~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~ 291 (487)
...+..++|..+..++.+. .|+. ..|+.--..+...| .+++++..++.+.+...+ +..+|+.---.+.+.|. .
T Consensus 48 ~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 48 ASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 3344555555555555542 2322 22332222333334 356666666555543221 12233322222233333 2
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CC----hHHH
Q 011378 292 EKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRS---GD----ASKA 364 (487)
Q Consensus 292 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~----~~~a 364 (487)
+++..+...+.+.. +-+...|+..-..+...|++++++..++.+++.... |...|+-....+.+. |. .+..
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 44555555554322 235666766666666777777777777777665422 233343333333222 11 1344
Q ss_pred HHHHHHHHHCCCCC-ChhhHHHHHHHHhcc----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 011378 365 DEFLSKMVSEGVDP-DSISYNTLINGFVRE----ENMDKAFALVSKMENQGLVPDVITYNVILTGFCR 427 (487)
Q Consensus 365 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 427 (487)
.+...+.+.. .| |...|+-+-..+... ++..+|.+++.+....+ ..++.....|++.|+.
T Consensus 203 l~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4444444432 23 345566555555542 23344666665544322 2244556667776664
No 182
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.45 E-value=3.8 Score=42.42 Aligned_cols=193 Identities=16% Similarity=0.121 Sum_probs=126.5
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhH
Q 011378 5 LCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRA 84 (487)
Q Consensus 5 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 84 (487)
+.+.|+.+.|...++.....+.. |..|...+-.+|-+.+..++|..+|+..... .|+..-...+..+|+|.+++.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999988766643 8889999999999999999999999987654 57766677788889999888876
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcc-C---------ChhHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhCCCHHH
Q 011378 85 KEVLDEMLQMGLSPDTATYNTLLVESCRK-E---------NMSEAEEIFCEMSRRG-VAPDIVSFSTLIGIFSRNGQLDR 153 (487)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~---------~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~ 153 (487)
.+.--+|-+. ++-+...+=+++...... . -+..|.+.++.+.+.+ .--+..-.-.-.......|.+++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 6655555432 122233322333332221 1 1334566677766554 11122222233345567788999
Q ss_pred HHHHH-HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011378 154 ALMYF-REMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGC 201 (487)
Q Consensus 154 a~~~~-~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 201 (487)
|.+++ ....+.-..-+...-+--++.+...+.+.+..++-.++...|.
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 99988 3343332233344445567777888888888888888877664
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.37 E-value=1.1 Score=44.67 Aligned_cols=135 Identities=12% Similarity=0.097 Sum_probs=94.1
Q ss_pred CCCCCChhhHHHHHHHHHh--cCC---hHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhcc--------CCHHHHHHHHH
Q 011378 339 KGIKPTLVSCNTIIKGYCR--SGD---ASKADEFLSKMVSEGVDPDS-ISYNTLINGFVRE--------ENMDKAFALVS 404 (487)
Q Consensus 339 ~~~~~~~~~~~~li~~~~~--~~~---~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~--------~~~~~a~~~~~ 404 (487)
.+.+.|...|...+++... .++ ...|..+|++..+ ..||- ..|..+..+|... .++..+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4567788999999998653 223 6688889988876 45764 3444443333221 12333333333
Q ss_pred HHHhC-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 405 KMENQ-GLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 405 ~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
+.... ....+...|.++.......|++++|...+++..+. .|+...|..+-..|...|++++|...+++-.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32222 23345577888877777889999999999998775 4788899999999999999999999987754
No 184
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.37 E-value=0.11 Score=42.21 Aligned_cols=69 Identities=19% Similarity=0.331 Sum_probs=42.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCCHHH
Q 011378 383 YNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMI-----EKGLNPDRST 452 (487)
Q Consensus 383 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~t 452 (487)
...++..+...|+++.|..+.+++.... ..|...|..+|.+|...|+..+|..+|+++. +.|+.|+..|
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4455666677778888887777776531 3356677888888888888888887777764 3578887664
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.34 E-value=0.067 Score=36.65 Aligned_cols=48 Identities=21% Similarity=0.384 Sum_probs=21.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 393 EENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMI 442 (487)
Q Consensus 393 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 442 (487)
.|++++|.+++++.... .| +...+-.+...|.+.|++++|..+++++.
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555444332 12 33333444445555555555555555443
No 186
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.34 E-value=5 Score=43.05 Aligned_cols=137 Identities=14% Similarity=0.164 Sum_probs=83.7
Q ss_pred ehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011378 277 TYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGY----CSMGHVTEAFRLWYEMVGKGIKPTLVSCNTII 352 (487)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 352 (487)
.|.-.++---++|-+++|..++ .|+...+.....+| ....++++|.-.|+..-+ ..--+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl 972 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKAL 972 (1265)
T ss_pred ccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHH
Confidence 3344444445555555555554 36666555555444 456777777776654321 12356
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 011378 353 KGYCRSGDASKADEFLSKMVSEGVDPDS--ISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGR 430 (487)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 430 (487)
.+|..+|++.+|..+...+... -|. .+--.|..-+...++.-+|.++..+--. ...-.+..+|+...
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s--------d~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS--------DPEEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc--------CHHHHHHHHhhHhH
Confidence 7888888888888887766531 122 2235677777788887777777765432 24455667788888
Q ss_pred hHHHHHHHHHH
Q 011378 431 MHDSELILWRM 441 (487)
Q Consensus 431 ~~~a~~~~~~m 441 (487)
+++|.++...-
T Consensus 1042 ~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1042 WEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHhc
Confidence 89887765543
No 187
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.32 E-value=4.5 Score=42.53 Aligned_cols=216 Identities=14% Similarity=0.072 Sum_probs=103.6
Q ss_pred CChhhHHHHHHHHHh------cC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-
Q 011378 203 MDVVTYNTILNGLCR------AK--MLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKP- 273 (487)
Q Consensus 203 ~~~~~~~~li~~~~~------~~--~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~- 273 (487)
.+..+|-.|...|.+ .+ +...|...+++..+.. .-+..+||.|--. .-.|++..+..-|- ...-..|
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfI--ks~~sep~ 848 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFI--KSRFSEPT 848 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhh--hhhhcccc
Confidence 345566555555544 11 1234555555554321 1244455554433 44455555544442 2222223
Q ss_pred CeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHH--HH--hCCCCCChhhH
Q 011378 274 DIVTYNTLIDGFCKVGEMEKANKLWADMISRKISP-NYISYGILINGYCSMGHVTEAFRLWYE--MV--GKGIKPTLVSC 348 (487)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~--m~--~~~~~~~~~~~ 348 (487)
...+|..+--.+.+..+++-|...|...++ +.| |...|-..-...-..|+.-++..+|.. .. ..|--|+..-|
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 445666666667778888888888876553 334 445555544444556666667666654 11 12222333222
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH---------CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh-CCCCCCHhhH
Q 011378 349 NTIIKGYCRSGDASKADEFLSKMVS---------EGVDPDSISYNTLINGFVREENMDKAFALVSKMEN-QGLVPDVITY 418 (487)
Q Consensus 349 ~~li~~~~~~~~~~~a~~~~~~m~~---------~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~ 418 (487)
-.-..-....|+.++-..-.++... .|.+-+...|.+..+..-+.+....|.++..+.-. ...+.|..+|
T Consensus 927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqy 1006 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQY 1006 (1238)
T ss_pred HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2222223344444332222221111 23444455666555555555555555555443321 1124566677
Q ss_pred HHHHHH
Q 011378 419 NVILTG 424 (487)
Q Consensus 419 ~~li~~ 424 (487)
|++..-
T Consensus 1007 nvak~~ 1012 (1238)
T KOG1127|consen 1007 NVAKPD 1012 (1238)
T ss_pred hhhhhh
Confidence 765443
No 188
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.26 E-value=0.55 Score=44.65 Aligned_cols=86 Identities=14% Similarity=0.061 Sum_probs=41.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCHHH
Q 011378 320 YCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDP-DSISYNTLINGFVREENMDK 398 (487)
Q Consensus 320 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~ 398 (487)
+...|++++|...|++..... +.+...|..+-.+|.+.|++++|...++..... .| +...|..+-.+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHHH
Confidence 334455555555555554332 223334444445555555555555555555432 22 23344444455555555555
Q ss_pred HHHHHHHHHh
Q 011378 399 AFALVSKMEN 408 (487)
Q Consensus 399 a~~~~~~m~~ 408 (487)
|...+++..+
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 189
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.10 E-value=1.4 Score=35.35 Aligned_cols=84 Identities=10% Similarity=0.127 Sum_probs=38.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCC
Q 011378 70 SLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNG 149 (487)
Q Consensus 70 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 149 (487)
.++..+.+.+.......+++.+...+ ..+....|.++..|++.. .....+.++. .++......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444455555555555554443 234445555555555432 2222222221 112222334555565555
Q ss_pred CHHHHHHHHHHH
Q 011378 150 QLDRALMYFREM 161 (487)
Q Consensus 150 ~~~~a~~~~~~m 161 (487)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555544
No 190
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.07 E-value=4.3 Score=40.87 Aligned_cols=328 Identities=14% Similarity=0.146 Sum_probs=154.2
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-CCCCC--------CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 011378 97 SPDTATYNTLLVESCRKENMSEAEEIFCEMSR-RGVAP--------DIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLV 167 (487)
Q Consensus 97 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~p--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 167 (487)
.|....|..|.......-.++.|+.-|-.... .|++. +...-.+-|.+| -|++++|.++|-+|..+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 47777787777777777777777777765543 23221 111111122222 367888888777775543
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011378 168 PDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMD----VVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTF 243 (487)
Q Consensus 168 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~ 243 (487)
..|..+.+.|++..+.++++ ..|...| ...|+.+-..+.....++.|.+.+..-.. -
T Consensus 765 -------LAielr~klgDwfrV~qL~r---~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~ 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIR---NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------T 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHH---ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------h
Confidence 23444555555555444332 1111111 12344444444444444444444433211 0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011378 244 TTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSM 323 (487)
Q Consensus 244 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 323 (487)
...+..+.+...+++-+.+ ...++-+....-.+-+++.+.|.-++|.+.+-... . | -.-+..|...
T Consensus 826 e~~~ecly~le~f~~LE~l-----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~L 891 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVL-----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVEL 891 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHH-----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHH
Confidence 1222222222222222111 12334455566667777777777777776654321 1 1 1345566677
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHH----------HHHHHHHhcCChHHHHHHHHHHHHC----CCCCCh----hhHHH
Q 011378 324 GHVTEAFRLWYEMVGKGIKPTLVSCN----------TIIKGYCRSGDASKADEFLSKMVSE----GVDPDS----ISYNT 385 (487)
Q Consensus 324 ~~~~~a~~~~~~m~~~~~~~~~~~~~----------~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~----~~~~~ 385 (487)
+++.+|.++-+...-..+..-+.-+. --|..+.++|+.-.|.+++.+|.++ +.+|-. ....+
T Consensus 892 nQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~A 971 (1189)
T KOG2041|consen 892 NQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGA 971 (1189)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHH
Confidence 77777776655432111111110010 1234456667766777777777543 333321 11222
Q ss_pred HH-HHHh----------ccCCHHHHHHHHHHHHhC---CC----CCCHhhHHHHH--HHHHhcCChHHHHHHHHHHHH-c
Q 011378 386 LI-NGFV----------REENMDKAFALVSKMENQ---GL----VPDVITYNVIL--TGFCRQGRMHDSELILWRMIE-K 444 (487)
Q Consensus 386 li-~~~~----------~~~~~~~a~~~~~~m~~~---g~----~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~-~ 444 (487)
|+ .-+- +.|..++|..+++.-... .+ =.....|.-+| .-....|.++.|.+.--.+.+ .
T Consensus 972 lLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYE 1051 (1189)
T KOG2041|consen 972 LLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYE 1051 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHh
Confidence 21 1111 234444554433321100 00 01122344343 444567888888765555543 3
Q ss_pred CCCCCHHHHHHHHHHHH
Q 011378 445 GLNPDRSTYTTLINGHV 461 (487)
Q Consensus 445 g~~p~~~ty~~l~~~~~ 461 (487)
.+-|....|..+--+-+
T Consensus 1052 d~lpP~eiySllALaac 1068 (1189)
T KOG2041|consen 1052 DFLPPAEIYSLLALAAC 1068 (1189)
T ss_pred hcCCHHHHHHHHHHHHh
Confidence 56677788877644333
No 191
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.05 E-value=0.67 Score=44.05 Aligned_cols=101 Identities=16% Similarity=0.080 Sum_probs=71.5
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 011378 283 DGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDAS 362 (487)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 362 (487)
..+...|++++|...|.+..... +-+...|..+..+|...|++++|+..++...... +.+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 44566788888888888876542 2245667777788888888888888888876543 234556777777888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHH
Q 011378 363 KADEFLSKMVSEGVDPDSISYNTLI 387 (487)
Q Consensus 363 ~a~~~~~~m~~~g~~p~~~~~~~li 387 (487)
+|...++...+. .|+......++
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHH
Confidence 888888887753 35544444443
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.89 E-value=0.12 Score=35.43 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=8.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHH
Q 011378 385 TLINGFVREENMDKAFALVSKM 406 (487)
Q Consensus 385 ~li~~~~~~~~~~~a~~~~~~m 406 (487)
.|..+|.+.|++++|..+++++
T Consensus 30 ~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 30 LLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHTT-HHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444433
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.87 E-value=0.15 Score=34.54 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=24.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 424 GFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 424 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
.+.+.|++++|...|++..+.. | +...+..+-..+...|++++|..++++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555554432 3 23344444445555555555555555443
No 194
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.73 E-value=1.7 Score=39.82 Aligned_cols=131 Identities=11% Similarity=0.148 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--c----CCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCC-
Q 011378 291 MEKANKLWADMISRKISPNYISYGILINGYCS--M----GHVTEAFRLWYEMVGKGI---KPTLVSCNTIIKGYCRSGD- 360 (487)
Q Consensus 291 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~--~----~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~- 360 (487)
+++...++..+.+.|+.-+..+|-+-...... . ....+|..+|+.|++... .++...+.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566777777788887777665332222211 1 235667888888876532 2334456556544 2333
Q ss_pred ---hHHHHHHHHHHHHCCCCCChh--hHHHHHHHHhccC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011378 361 ---ASKADEFLSKMVSEGVDPDSI--SYNTLINGFVREE--NMDKAFALVSKMENQGLVPDVITYNVILT 423 (487)
Q Consensus 361 ---~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (487)
.+.++.+++.+.+.|+..+-. ..+.++..+-... ...++.++++.+++.|+++....|..+--
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 355677777777777765432 2333332222111 14567777778888888877777665533
No 195
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.65 E-value=1.2 Score=42.21 Aligned_cols=145 Identities=14% Similarity=0.225 Sum_probs=103.6
Q ss_pred eehHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-HHHHHH
Q 011378 276 VTYNTLIDGFCKVGEMEKANKLWADMISRK-ISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVS-CNTIIK 353 (487)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~ 353 (487)
..|...|+...+..-++.|..+|.+..+.+ +.+++..++++|.-++. |+...|.++|+-=... -||... .+-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456778888888888899999999888887 67888899999987765 6677888888753222 344443 345666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011378 354 GYCRSGDASKADEFLSKMVSEGVDPD--SISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFC 426 (487)
Q Consensus 354 ~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (487)
-+.+.++-+.|..+|+....+ +..+ ..+|..+|+.=...|++..+..+=++|.+. .|...+-.+..+.|.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 777888888888888855432 1122 457888888888889998888887777663 555555555555553
No 196
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.63 E-value=4.1 Score=38.48 Aligned_cols=77 Identities=9% Similarity=0.036 Sum_probs=40.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCC--C-ChhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011378 280 TLIDGFCKVGEMEKANKLWADMISRKIS--P-NYISYGILINGYCS---MGHVTEAFRLWYEMVGKGIKPTLVSCNTIIK 353 (487)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~~~~--p-~~~t~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 353 (487)
.|+-+|....+++...++.+.+...... + ....--...-++-+ .|+.++|.+++..+....-.++..+|..+-.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444567777777777777766543111 0 11111122233334 5667777777766555555666666665555
Q ss_pred HHH
Q 011378 354 GYC 356 (487)
Q Consensus 354 ~~~ 356 (487)
.|.
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 543
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.53 E-value=0.23 Score=33.54 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=29.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 213 NGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMT 267 (487)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 267 (487)
..+.+.|++++|.+.|++..+.. +-+...+..+-..+...|++++|...|+...
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455566666666666665543 2244555555556666666666666665544
No 198
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.43 E-value=1.8 Score=33.67 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=6.9
Q ss_pred HHHHHhccCCHHHHHHHHH
Q 011378 386 LINGFVREENMDKAFALVS 404 (487)
Q Consensus 386 li~~~~~~~~~~~a~~~~~ 404 (487)
+-.+|.+.|+..++.+++.
T Consensus 126 ia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 126 IANAYKKLGNTREANELLK 144 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHHHH
Confidence 3333333333333333333
No 199
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.43 E-value=0.59 Score=45.57 Aligned_cols=129 Identities=16% Similarity=0.115 Sum_probs=66.6
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011378 278 YNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCR 357 (487)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 357 (487)
.+.++.-+-+.|-.+.|+.+-.+-. .-.+...+.|+++.|.++.++ .++...|..|-+...+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 5556666666666666665543311 123334455666666654432 2355566666666666
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 011378 358 SGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELI 437 (487)
Q Consensus 358 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 437 (487)
.|+++.|++.+++... |..|+-.|.-.|+.+.-.++.+.-...| -+|+...++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665432 4555555666666665555555444443 345555555555555555544
Q ss_pred HH
Q 011378 438 LW 439 (487)
Q Consensus 438 ~~ 439 (487)
+.
T Consensus 425 L~ 426 (443)
T PF04053_consen 425 LI 426 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 200
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.34 E-value=7.2 Score=40.14 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC
Q 011378 101 ATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRN 148 (487)
Q Consensus 101 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 148 (487)
..| .+|..|.|+|++++|.++..+..+. .......|-..+..|..+
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 344 3455666888888888877444332 333344566667776654
No 201
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.31 E-value=0.13 Score=36.32 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 417 TYNVILTGFCRQGRMHDSELILWRMIEK--GLN---PD-RSTYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 417 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~---p~-~~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
+|+.+-..|...|++++|...|++..+. -.. |+ ..+|..+-..|...|++++|.+++++-.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666777777777666665532 111 22 3466677777777777777777776543
No 202
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.27 E-value=1.2 Score=36.14 Aligned_cols=88 Identities=14% Similarity=0.029 Sum_probs=53.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHH
Q 011378 213 NGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEME 292 (487)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 292 (487)
..+...|++++|.++|+-+..-. +-+..-|-.|--.|-..|++++|+..|........ -|...+-.+-.++.+.|+.+
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHH
Confidence 33456677777777777665432 22344455566666667777777777766554442 34455556666677777777
Q ss_pred HHHHHHHHHH
Q 011378 293 KANKLWADMI 302 (487)
Q Consensus 293 ~a~~~~~~m~ 302 (487)
.|.+-|+...
T Consensus 121 ~A~~aF~~Ai 130 (157)
T PRK15363 121 YAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.07 E-value=2.2 Score=33.12 Aligned_cols=49 Identities=22% Similarity=0.229 Sum_probs=19.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 288 VGEMEKANKLWADMISRKISPNY--ISYGILINGYCSMGHVTEAFRLWYEM 336 (487)
Q Consensus 288 ~g~~~~a~~~~~~m~~~~~~p~~--~t~~~li~~~~~~~~~~~a~~~~~~m 336 (487)
.|+.++|..+|++....|..... ..+-.+-.++-..|++++|..++++.
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEA 64 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444443333221 12223333344444444444444433
No 204
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.03 E-value=1.7 Score=42.47 Aligned_cols=129 Identities=20% Similarity=0.124 Sum_probs=57.9
Q ss_pred hHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 011378 68 YNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSR 147 (487)
Q Consensus 68 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 147 (487)
.+.+++-+-+.|.++.|+++..+-.. -.....+.|+++.|.++-++. .+...|..|-....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 45555555555555555554443211 223334455555555443322 234455555555555
Q ss_pred CCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHH
Q 011378 148 NGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDL 227 (487)
Q Consensus 148 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 227 (487)
.|+++.|.+.|.+.+ -|..|+-.|.-.|+.+.-.++.+.-...|- +|....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence 555555555555432 234444445555555554444444444432 33344444444555555544
Q ss_pred HH
Q 011378 228 FN 229 (487)
Q Consensus 228 ~~ 229 (487)
+.
T Consensus 425 L~ 426 (443)
T PF04053_consen 425 LI 426 (443)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 205
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=8.1 Score=39.39 Aligned_cols=342 Identities=13% Similarity=0.128 Sum_probs=185.9
Q ss_pred CCCCCCccchH-----HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHCC
Q 011378 59 KGLKPGVFTYN-----SLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKE---NMSEAEEIFCEMSRRG 130 (487)
Q Consensus 59 ~~~~p~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~g 130 (487)
-|++.+..-|. .+|+-+...+.+..|.++-..+...-..- ...|.....-+.+.. +-+-+..+-+++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 35555544443 45777778888999999888875321111 455555555554442 222233333333332
Q ss_pred CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChh
Q 011378 131 VAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGL----VPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVV 206 (487)
Q Consensus 131 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 206 (487)
..|. .+|..+...-..+|+.+.|..+++.=...+- -.+..-+...+.-..+.|+.+-...++..+..+ .+..
T Consensus 504 ~~~~-iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s 579 (829)
T KOG2280|consen 504 LTPG-ISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRS 579 (829)
T ss_pred CCCc-eeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHH
Confidence 3444 4678888888899999999888764222111 012223555666666777776666665555432 1111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH---HHHCCCCCCeeehHHHHH
Q 011378 207 TYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDI---MTQKSIKPDIVTYNTLID 283 (487)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~---m~~~~~~~~~~~~~~li~ 283 (487)
.+.-. ..+.-.|..+|.+..++.-... +..+...++-..+...|.. .....+.+-.......-+
T Consensus 580 ~l~~~------l~~~p~a~~lY~~~~r~~~~~~-------l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~ 646 (829)
T KOG2280|consen 580 SLFMT------LRNQPLALSLYRQFMRHQDRAT-------LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAAN 646 (829)
T ss_pred HHHHH------HHhchhhhHHHHHHHHhhchhh-------hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHH
Confidence 11111 1223344445544433210000 0111122222222222210 000001111222233334
Q ss_pred HHHccCC-------HHHHHH---HHHHHH-hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011378 284 GFCKVGE-------MEKANK---LWADMI-SRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTII 352 (487)
Q Consensus 284 ~~~~~g~-------~~~a~~---~~~~m~-~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 352 (487)
.+.+... .++-.+ +.+... +.+..-.-.|.+-.+.-+...|+-.+|.++-.+.+ -||...|..=+
T Consensus 647 ~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~ 722 (829)
T KOG2280|consen 647 AFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKL 722 (829)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHH
Confidence 4444333 111122 222222 12334445567777888888999999999877764 68888888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChH
Q 011378 353 KGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMH 432 (487)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 432 (487)
.+++..+++++.+++-+.+.. +.-|.-.+.+|.+.|+.++|.+++.+... +.-...+|.+.|++.
T Consensus 723 ~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~ 787 (829)
T KOG2280|consen 723 TALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVK 787 (829)
T ss_pred HHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHH
Confidence 999999999987776665442 34466678999999999999998876432 114567888888888
Q ss_pred HHHHHH
Q 011378 433 DSELIL 438 (487)
Q Consensus 433 ~a~~~~ 438 (487)
+|..+-
T Consensus 788 eAad~A 793 (829)
T KOG2280|consen 788 EAADLA 793 (829)
T ss_pred HHHHHH
Confidence 886543
No 206
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.97 E-value=0.37 Score=32.95 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 011378 205 VVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDG-NMNKALNLFDIMT 267 (487)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g-~~~~a~~~~~~m~ 267 (487)
..+|..+-..+.+.|++++|...|.+..+.. +-+...|..+-.+|...| ++++|+..|+...
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3456666666677777777777777766643 224556666666677776 5777776666544
No 207
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.74 E-value=6.7 Score=37.55 Aligned_cols=422 Identities=14% Similarity=0.210 Sum_probs=229.8
Q ss_pred hhhHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHH--HhcCChhHHHHHHHHHhhC--CCCCC---c--------c
Q 011378 2 VNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAY--CREGFLEEAFQLMNSMSGK--GLKPG---V--------F 66 (487)
Q Consensus 2 i~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~--~~~p~---~--------~ 66 (487)
|++|..+. ++.....+.+.++.- | ...|-.+..++ -+.+.++.|.+.+..-.++ +-.|. . +
T Consensus 53 lnAffl~n-ld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df 128 (549)
T PF07079_consen 53 LNAFFLNN-LDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDF 128 (549)
T ss_pred HHHHHHhh-HHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHH
Confidence 44554443 666666777765542 2 22344444443 4688899999888766554 32221 1 1
Q ss_pred c-hHHHHHHHHhcCChhhHHHHHHHHHHCCCC----CCHHHHHHHHHHHHccCChhHHHHHHHHHHH---CCCCCCHhHH
Q 011378 67 T-YNSLINGLCKKGRCDRAKEVLDEMLQMGLS----PDTATYNTLLVESCRKENMSEAEEIFCEMSR---RGVAPDIVSF 138 (487)
Q Consensus 67 ~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~ 138 (487)
. =+.....+...|.+.+++.+++++.+.=++ .+..+||.++-.+++. .|-++++ ..+-|+- |
T Consensus 129 ~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pdy--Y 198 (549)
T PF07079_consen 129 FLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPDY--Y 198 (549)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChHH--H
Confidence 1 134566778899999999999998865444 7889999877777664 3333322 3344442 2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCcCChh-hHHHHHHHH
Q 011378 139 STLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNG--FVLEALKMRDEMLEKGCVMDVV-TYNTILNGL 215 (487)
Q Consensus 139 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~ 215 (487)
-+|-.|-+.= ..+++-.-..+.|.......+++...-.. ...--.++++.+.+.-+.|+-. ....++..+
T Consensus 199 -emilfY~kki------~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f 271 (549)
T PF07079_consen 199 -EMILFYLKKI------HAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQF 271 (549)
T ss_pred -HHHHHHHHHH------HHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHH
Confidence 2333333221 11111111123444444444444433222 1222234444444555555422 223333333
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeee-------hHHHHHH
Q 011378 216 CRAKMLTEADDLFNEMLERGVFP----DFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVT-------YNTLIDG 284 (487)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~~----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-------~~~li~~ 284 (487)
.+ +.+++..+=+.+....+.+ =..+|..++....+.++..+|-+.+..+.-- .|+... -.++-+.
T Consensus 272 ~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~I 347 (549)
T PF07079_consen 272 MS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDI 347 (549)
T ss_pred hc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHH
Confidence 33 4444444433332221111 2457899999999999999998888766532 333322 1233333
Q ss_pred HHcc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHH---HHhcCC-HHHHHHHHHHHHhC---CCCCChhhHHHHHH
Q 011378 285 FCKV----GEMEKANKLWADMISRKISPNYISYGILING---YCSMGH-VTEAFRLWYEMVGK---GIKPTLVSCNTIIK 353 (487)
Q Consensus 285 ~~~~----g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~---~~~~~~-~~~a~~~~~~m~~~---~~~~~~~~~~~li~ 353 (487)
.|.- -+...-..+|.......+..- ..-.-|+.+ +-+.|. -++|+++++...+- .++.-..++..+-.
T Consensus 348 v~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq 426 (549)
T PF07079_consen 348 VCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQ 426 (549)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4421 134455666666665433211 111223322 344555 67788888877642 12222223333444
Q ss_pred HHHhc---CChHHHHHHHHHHHHCCCCCChh----hHHHHHHH--HhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011378 354 GYCRS---GDASKADEFLSKMVSEGVDPDSI----SYNTLING--FVREENMDKAFALVSKMENQGLVPDVITYNVILTG 424 (487)
Q Consensus 354 ~~~~~---~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (487)
+|... ..+.+...+-+...+.|++|-.+ .-|.|-+| ....|++.++.-.-.-+.+ +.|++.+|.-+--.
T Consensus 427 ~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~ 504 (549)
T PF07079_consen 427 AYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLC 504 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHH
Confidence 55432 34555566666667789887433 34444433 2356888887654433333 68999999877667
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011378 425 FCRQGRMHDSELILWRMIEKGLNPDRSTYTTL 456 (487)
Q Consensus 425 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l 456 (487)
...+.++++|+.+++.+ .|+..++++=
T Consensus 505 l~e~k~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 505 LMENKRYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred HHHHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence 77899999999999874 6787777654
No 208
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=93.57 E-value=5.1 Score=35.69 Aligned_cols=56 Identities=7% Similarity=-0.023 Sum_probs=31.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 211 ILNGLCRAKMLTEADDLFNEMLER--GVFPDFYTFTTLIHGHCKDGNMNKALNLFDIM 266 (487)
Q Consensus 211 li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 266 (487)
+..-|.+.|.+..|..-|+.+.++ +.+......-.++.+|.+.|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 334456666666666666666553 22333444555666666666666666555544
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.46 E-value=1.9 Score=38.88 Aligned_cols=93 Identities=14% Similarity=0.046 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HhhH
Q 011378 347 SCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDS----ISYNTLINGFVREENMDKAFALVSKMENQGLVPD----VITY 418 (487)
Q Consensus 347 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~ 418 (487)
.|..-+....+.|++++|...|+.+.+.- |+. ..+--+-..|...|++++|...|+.+.+. .|+ ...+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHH
Confidence 34444444445566666666666666432 322 23334455556666666666666666432 122 1222
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 419 NVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 419 ~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
--+...+...|+.++|..++++..+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2233344455666666666555543
No 210
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.32 E-value=0.58 Score=31.97 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 011378 416 ITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQN-NLKEAFRFHDEML 477 (487)
Q Consensus 416 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~l~~~~~~~~-~~~~a~~~~~~m~ 477 (487)
.+|..+-..+.+.|++++|...|.+..+. .| +...|..+-.+|...| ++++|++.+++-+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34555555566666666666666665543 23 3345555555666666 4666666655443
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.03 E-value=0.33 Score=34.23 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 207 TYNTILNGLCRAKMLTEADDLFNEMLER--GVF---PD-FYTFTTLIHGHCKDGNMNKALNLFDIM 266 (487)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~---~~-~~t~~~li~~~~~~g~~~~a~~~~~~m 266 (487)
+|+.+-..|...|++++|...|++..+. ... |+ ..++..+-..|...|+.++|+..++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555666666666666666666665432 111 11 345556666666666666666666543
No 212
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.96 E-value=4.5 Score=33.35 Aligned_cols=132 Identities=14% Similarity=0.144 Sum_probs=72.2
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH-HhCC
Q 011378 332 LWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKM-ENQG 410 (487)
Q Consensus 332 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~g 410 (487)
..+.+...+++|+...+..+++.+.+.|..... ..+...++-||.......+-.+. +....+.++--.| +..|
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhh
Confidence 344455667777777777777777777775553 33344566666554444432222 1222333332222 2211
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 411 LVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 478 (487)
Q Consensus 411 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~ 478 (487)
..+..++..+...|++-+|.++.++.... +......++.+-...+|...-..+++-..+
T Consensus 90 -----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 -----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred -----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13667777888888888888877664221 111224466666666665555555555444
No 213
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.77 E-value=7.2 Score=35.15 Aligned_cols=114 Identities=11% Similarity=0.154 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHH-CCCCCCeeehHHHHHHHHccCCHHHHHH
Q 011378 221 LTEADDLFNEMLE-RGVFPDFYTFTTLIHGHCK-DG-NMNKALNLFDIMTQ-KSIKPDIVTYNTLIDGFCKVGEMEKANK 296 (487)
Q Consensus 221 ~~~a~~~~~~m~~-~~~~~~~~t~~~li~~~~~-~g-~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~ 296 (487)
+.+|.++|+.... ..+--|..+.+.+++.... .+ ....-.++.+.+.+ .+-.++..+...+|+.+++.+++++-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455566653322 3355566666666666655 22 23333344444432 3455666677777777777777777777
Q ss_pred HHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011378 297 LWADMISR-KISPNYISYGILINGYCSMGHVTEAFRLWY 334 (487)
Q Consensus 297 ~~~~m~~~-~~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 334 (487)
+|...... +..-|...|..+|..-...|+..-..++.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 77665544 455567777777777777777665555444
No 214
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=92.70 E-value=7 Score=34.83 Aligned_cols=55 Identities=9% Similarity=0.033 Sum_probs=29.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 422 LTGFCRQGRMHDSELILWRMIEK--GLNPDRSTYTTLINGHVSQNNLKEAFRFHDEM 476 (487)
Q Consensus 422 i~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m 476 (487)
...|-+.|.+.-|..=++.+.+. +-.......-.++.+|...|..++|..+..-+
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34455666666666666665542 11223334455566666666666666655433
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.67 E-value=3.3 Score=37.36 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 137 SFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDN----VLYTIIINGYCRNGFVLEALKMRDEML 197 (487)
Q Consensus 137 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~ 197 (487)
.|...+....+.|++++|...|+.+.+.. |+. ..+-.+-..|...|+.++|...|..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444455566666666666555432 221 233344444445555555555555444
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.53 E-value=1.1 Score=30.89 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=29.9
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 388 NGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
..|.+.+++++|.++++++...+ +.++..|.-.-..+.+.|++++|...|++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34555666666666666655431 11333444445555666666666666666553
No 217
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=11 Score=36.73 Aligned_cols=103 Identities=20% Similarity=0.184 Sum_probs=74.5
Q ss_pred hhHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCc-cchHHHHHHHHhcCCh
Q 011378 3 NALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGV-FTYNSLINGLCKKGRC 81 (487)
Q Consensus 3 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~ 81 (487)
++.+..|+++.|...|-+..... +++...|+.=..+|++.|++++|++=-.. ...+.|+- ..|...-.++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k--~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATK--TRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHH--HHhcCCchhhHHHHhHHHHHhcccH
Confidence 34577899999999998876654 34778899999999999999998854333 23456663 5677777788888999
Q ss_pred hhHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 011378 82 DRAKEVLDEMLQMGLSPD-TATYNTLLVES 110 (487)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~ 110 (487)
++|..-|.+=++. .|+ ...++-+..++
T Consensus 87 ~eA~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 9999999876553 343 34444444444
No 218
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.32 E-value=1.6 Score=39.36 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=62.0
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh
Q 011378 234 RGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQK---SIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNY 310 (487)
Q Consensus 234 ~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 310 (487)
.|......+...++..-....+++.++..+=.++.. ...|+... .+.++-+.+- ++++++.++..-...|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllky-~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLKY-DPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHcc-ChHHHHHHHhCcchhccccch
Confidence 344455556666665555566677776666555432 22233222 2334433332 556777777766677777777
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011378 311 ISYGILINGYCSMGHVTEAFRLWYEMVGK 339 (487)
Q Consensus 311 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 339 (487)
.+++.+|+.+.+.+++.+|.++..+|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777777776665543
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.11 E-value=0.8 Score=31.67 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=46.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011378 423 TGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQRG 480 (487)
Q Consensus 423 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~g 480 (487)
..|.+++++++|..+++.+...+- .+...|...-..+...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 568899999999999999987522 255566777789999999999999999988543
No 220
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.11 E-value=2 Score=38.63 Aligned_cols=101 Identities=14% Similarity=0.276 Sum_probs=77.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCC
Q 011378 353 KGYCRSGDASKADEFLSKMVSEGVDP-DSISYNTLINGFVREENMDKAFALVSKMENQGLVPD-VITYNVILTGFCRQGR 430 (487)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 430 (487)
.-+.+.+++++|...|.+.+. +.| |.+-|..=-.+|.+.|.++.|++=.+.-.. +.|. ..+|..|=.+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 346678999999999998886 445 566677778899999999999886665433 3443 3578999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011378 431 MHDSELILWRMIEKGLNPDRSTYTTLING 459 (487)
Q Consensus 431 ~~~a~~~~~~m~~~g~~p~~~ty~~l~~~ 459 (487)
+++|...|++.++ +.|+=.+|..=+..
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 9999999888654 68887777765543
No 221
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.01 E-value=3.2 Score=37.32 Aligned_cols=97 Identities=22% Similarity=0.332 Sum_probs=65.7
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChH
Q 011378 285 FCKVGEMEKANKLWADMISRKISP-NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPT-LVSCNTIIKGYCRSGDAS 362 (487)
Q Consensus 285 ~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~ 362 (487)
+.+.+++++|...|.+.+. +.| |.+-|..=-.+|++.|.++.|.+-.+.-+. +.|. ..+|..|=.+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 4556788888888877654 333 566677778888888888888776554432 2232 246777777888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHH
Q 011378 363 KADEFLSKMVSEGVDPDSISYNTLI 387 (487)
Q Consensus 363 ~a~~~~~~m~~~g~~p~~~~~~~li 387 (487)
+|.+.|++.. .+.|+-.+|-.=+
T Consensus 167 ~A~~aykKaL--eldP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKAL--ELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhh--ccCCCcHHHHHHH
Confidence 8888877655 3667766665444
No 222
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=91.99 E-value=6.5 Score=32.85 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=98.4
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCChhh
Q 011378 306 ISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSE---GVDPDSIS 382 (487)
Q Consensus 306 ~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~ 382 (487)
..|++..---|-.+....|+..+|...|.+-..--+--|....-.+-++....++...|...++++.+. +-.||..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~- 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH- 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch-
Confidence 357777777788888899999999999888765555667777778888888888888888888887764 3445533
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 011378 383 YNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYT 454 (487)
Q Consensus 383 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~ 454 (487)
-.+-..+...|+..+|+.-|+.... ..|+...-...-..+.++|+..++..-+....+. +.-+...|.
T Consensus 164 -Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~-~~r~~~H~r 231 (251)
T COG4700 164 -LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVDT-AKRSRPHYR 231 (251)
T ss_pred -HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HHhcchhHH
Confidence 3445677788888888888877665 3566554444445567778777776544443321 223444554
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.69 E-value=3.7 Score=39.47 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 345 LVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDS----ISYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 345 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
...++.+-.+|...|++++|...++...+. .|+. ..|..+-.+|.+.|+.++|.+.+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666666777777777777777665543 3543 2466666677777777777776666654
No 224
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.65 E-value=3.2 Score=37.54 Aligned_cols=104 Identities=13% Similarity=0.271 Sum_probs=69.0
Q ss_pred HCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc
Q 011378 128 RRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAG---LVPD--NVLYTIIINGYCRNGFVLEALKMRDEMLEKGCV 202 (487)
Q Consensus 128 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 202 (487)
..|...+..+...++..-....+++.+..++-+++... ..|+ .++|-.++..| +.+++.-++..-...|+-
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky----~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY----DPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc----ChHHHHHHHhCcchhccc
Confidence 45555566666667777677778888887777776532 2222 23333333332 455777777777778888
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011378 203 MDVVTYNTILNGLCRAKMLTEADDLFNEMLERG 235 (487)
Q Consensus 203 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 235 (487)
||..+.+.+|+.+.+.+++.+|-++.-.|..++
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888888888877777766554
No 225
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=91.45 E-value=2.7 Score=33.65 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 011378 137 SFSTLIGIFSRNGQ-LDRALMYFREMKSAGLVPDNVLYTIIINGYC 181 (487)
Q Consensus 137 ~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 181 (487)
+|.+++++.++..- ---+..+|..|++.+.+++...|..+|+++.
T Consensus 81 sf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 81 SFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred hHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34444444444333 2233344444444444444444444444433
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.15 E-value=14 Score=35.04 Aligned_cols=76 Identities=13% Similarity=0.027 Sum_probs=41.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCcCChhhHHHHHH
Q 011378 140 TLIGIFSRNGQLDRALMYFREMKSAG---LVPDNVLYTIIINGYCR---NGFVLEALKMRDEMLEKGCVMDVVTYNTILN 213 (487)
Q Consensus 140 ~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 213 (487)
.++-.|-...+++...++.+.+.... +.-...+--...-++-| .|+.++|.+++.......-.+++.+|..+-.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44455777777777777777776531 11111111112223334 6777777777777555555566666655544
Q ss_pred HH
Q 011378 214 GL 215 (487)
Q Consensus 214 ~~ 215 (487)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
No 227
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.15 E-value=6.8 Score=35.93 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=80.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH--HHHH--HHhccCCHHH
Q 011378 323 MGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYN--TLIN--GFVREENMDK 398 (487)
Q Consensus 323 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~--~~~~~~~~~~ 398 (487)
.|.+.+|-..|+.+.+ ..+.|...++---.+|.-.|+.+.-...+++.... ..||...|+ .=|. ++...|.+++
T Consensus 116 ~g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 3555555556666553 34556666666666676677766666666666542 123332222 1122 2235667777
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 399 AFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEK---GLNPDRSTYTTLINGHVSQNNLKEAFRFHDE 475 (487)
Q Consensus 399 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~ 475 (487)
|++.-++--+-+ ..|.-.-....+.+-..|+..++.+..++-... +.-.-...|-..--.+.+.+.++.|..++..
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 766555443321 224444455555566677777776665553211 1112234555555566666777777777654
No 228
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=90.94 E-value=7.6 Score=31.61 Aligned_cols=84 Identities=7% Similarity=-0.135 Sum_probs=40.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011378 181 CRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKAL 260 (487)
Q Consensus 181 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~ 260 (487)
...|++++|..+|+-+..... -+..-|-.|--++-..|++++|...|....... +-|+..+-.+-.++...|+.+.|.
T Consensus 46 y~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence 344555555555544433211 122233344444445555555555555554433 234455555555555566666665
Q ss_pred HHHHHH
Q 011378 261 NLFDIM 266 (487)
Q Consensus 261 ~~~~~m 266 (487)
.-|+..
T Consensus 124 ~aF~~A 129 (157)
T PRK15363 124 KALKAV 129 (157)
T ss_pred HHHHHH
Confidence 555543
No 229
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.90 E-value=22 Score=36.93 Aligned_cols=178 Identities=13% Similarity=0.164 Sum_probs=106.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHH----HHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 011378 32 TYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLIN----GLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLL 107 (487)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~----~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 107 (487)
...+-|..+.+...++.|+.+-.. .+. +..+...+.. .+.+.|++++|...+-+-... +.| ..++
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH
Confidence 345567777777777777766543 222 2333333333 345688888888877664321 111 2355
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 011378 108 VESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVL 187 (487)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 187 (487)
.-|.......+-...++.+.+.|+.- ...-+.|+++|.+-++.+.-.++.+... .|.. .+-....+..+.+.+..+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 66666666777777788888888754 3344678889999988888777766544 3322 112445666666777777
Q ss_pred HHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 188 EALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEML 232 (487)
Q Consensus 188 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 232 (487)
+|..+-..... .......+ +-..+++++|.+.++.+.
T Consensus 481 ~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 77655443322 22222333 334577888888877653
No 230
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.58 E-value=7 Score=30.62 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 011378 312 SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVD 377 (487)
Q Consensus 312 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 377 (487)
....-++.....|.-+.-.++..++.+. -++++...-.+-.+|.+.|+..++.+++++.-++|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3445566667777777777777777653 3666677777778888888888888888887777764
No 231
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.51 E-value=3.6 Score=37.11 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=41.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCChhhHHHHH
Q 011378 103 YNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKS-----AGLVPDNVLYTIII 177 (487)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~ll 177 (487)
+..++..+...++.+.+.+.++++.... +.+...|..+|.+|.+.|+...|+..|+++++ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3445555555566666666666655442 23455566666666666666666666665543 34555544444443
Q ss_pred HH
Q 011378 178 NG 179 (487)
Q Consensus 178 ~~ 179 (487)
+.
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
No 232
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.23 E-value=3.5 Score=34.61 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 207 TYNTILNGLCRAKMLTEADDLFNEMLERGVFPD--FYTFTTLIHGHCKDGNMNKALNLFDIMT 267 (487)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~t~~~li~~~~~~g~~~~a~~~~~~m~ 267 (487)
.+..+...|++.|+.+.|.+.|.++.+....|. ...+-.+|......+++..+........
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456666777777777777777777776554443 2345667777777777777766665544
No 233
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.19 E-value=9.5 Score=31.51 Aligned_cols=131 Identities=18% Similarity=0.246 Sum_probs=68.3
Q ss_pred HHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-C
Q 011378 51 QLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSR-R 129 (487)
Q Consensus 51 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~ 129 (487)
+.+.++...+++|+...|..+|+.+.+.|.+.. +..+.+.++-+|.......+-.+... ...+.++=-+|.. .
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHHHh
Confidence 445556666777777777777777777776443 33445556666665555444333322 2223333222221 1
Q ss_pred CCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 130 GVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEM 196 (487)
Q Consensus 130 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 196 (487)
|. .+..++..+...|++-+|+++.+.... .+......++++-.+.++..--..++.-.
T Consensus 89 ~~-----~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 89 GT-----AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred hh-----hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 244566777777777777777665422 12223345566655555554444444333
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=89.62 E-value=7.4 Score=37.55 Aligned_cols=60 Identities=17% Similarity=0.019 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 172 LYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDV----VTYNTILNGLCRAKMLTEADDLFNEMLE 233 (487)
Q Consensus 172 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (487)
.|+.+-.+|.+.|++++|...+++-.+. .|+. .+|..+-.+|...|++++|...+++..+
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555555555555544332 1221 2344555555555555555555555444
No 235
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=89.54 E-value=13 Score=32.07 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=20.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHH
Q 011378 282 IDGFCKVGEMEKANKLWADMISRKISPNY----ISYGILINGYCSMGHVT 327 (487)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~t~~~li~~~~~~~~~~ 327 (487)
.+.|.+.|.+..|..-++.+.+.- |+. ...-.++.+|.+.|..+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~y--p~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENY--PDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhCChH
Confidence 344555555555555555554431 221 23344555555555444
No 236
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.87 E-value=18 Score=34.19 Aligned_cols=66 Identities=14% Similarity=0.027 Sum_probs=50.1
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011378 414 DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP---DRSTYTTLINGHVSQNNLKEAFRFHDEMLQR 479 (487)
Q Consensus 414 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~ 479 (487)
...+|.-++..+.++|.++.|...+.++...+..+ .+...-.-.+.....|+.++|+..+++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44578888999999999999999999987644222 3344444567777889999999999888873
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.76 E-value=27 Score=34.72 Aligned_cols=52 Identities=10% Similarity=0.142 Sum_probs=25.4
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HhcCCh-------HHHHHHHHHH
Q 011378 389 GFVREENMDKAFALVSKMENQGLVPDVITYNVILTGF-CRQGRM-------HDSELILWRM 441 (487)
Q Consensus 389 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~-------~~a~~~~~~m 441 (487)
.++-..++++|.+.+.++.+.. ..+...|.-+..+| ...|+. ++|..+|.+.
T Consensus 314 ~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 314 CHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 3444556666666666665432 22333444444433 344555 5555555554
No 238
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.60 E-value=6.1 Score=35.69 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 011378 314 GILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKM 371 (487)
Q Consensus 314 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 371 (487)
..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|...++.+
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 334444444444444444444443221 223334444444444444444444444433
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.53 E-value=27 Score=34.66 Aligned_cols=163 Identities=13% Similarity=0.060 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCee
Q 011378 207 TYNTILNGLCRAKMLTEADDLFNEMLER-GVFPDF-----YTFTTLIHGHCK----DGNMNKALNLFDIMTQKSIKPDIV 276 (487)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~-----~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~ 276 (487)
....+++..+=.|+-+.+.+.+.+..+. ++.-.. -+|..++..++. ....+.|.++++.+.++ -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 3445555566666666666666655432 221111 223344433333 34567777777776654 45655
Q ss_pred ehHHHH-HHHHccCCHHHHHHHHHHHHhCC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011378 277 TYNTLI-DGFCKVGEMEKANKLWADMISRK-ISP--NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTII 352 (487)
Q Consensus 277 ~~~~li-~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 352 (487)
.|.-.- +.+...|++++|.+.|.+..... -.| ....+=-+...+....++++|...|..+.+.. ..+..+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 443322 23455677888888887544311 111 11223334555677788999999998887642 23444554444
Q ss_pred HHH-HhcCCh-------HHHHHHHHHHH
Q 011378 353 KGY-CRSGDA-------SKADEFLSKMV 372 (487)
Q Consensus 353 ~~~-~~~~~~-------~~a~~~~~~m~ 372 (487)
.+| ...++. ++|.+++.+..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 443 245666 77888887765
No 240
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=88.20 E-value=10 Score=30.36 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCC-hhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 011378 69 NSLINGLCKKGRCDRAKEVLDEMLQMG-----LSPDTATYNTLLVESCRKEN-MSEAEEIFCEMSRRGVAPDIVSFSTLI 142 (487)
Q Consensus 69 ~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li 142 (487)
|.++...+..+++.....+++.+.... -..+..+|++++.+.++... --.+..+|+.|++.+.+++...|..+|
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444445554444444442110 02345567777777766555 345556677777766777777777777
Q ss_pred HHHHhCCCHH
Q 011378 143 GIFSRNGQLD 152 (487)
Q Consensus 143 ~~~~~~g~~~ 152 (487)
.++.+-...+
T Consensus 123 ~~~l~g~~~~ 132 (145)
T PF13762_consen 123 KAALRGYFHD 132 (145)
T ss_pred HHHHcCCCCc
Confidence 7766653333
No 241
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=88.08 E-value=20 Score=32.47 Aligned_cols=100 Identities=10% Similarity=0.089 Sum_probs=60.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChhhHH
Q 011378 308 PNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCR---SGDASKADEFLSKMVSEGVDPDSISYN 384 (487)
Q Consensus 308 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~ 384 (487)
-|...|-.|-..|...|++++|..-|..-.+.. .+|...+..+-.++.. ..+..++..+++++.... +-|+....
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 366777777778888888887777777655421 2333334344343332 233566777777776532 12344555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhC
Q 011378 385 TLINGFVREENMDKAFALVSKMENQ 409 (487)
Q Consensus 385 ~li~~~~~~~~~~~a~~~~~~m~~~ 409 (487)
.|--.+...|++.+|...++.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5556667777777777777777664
No 242
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.58 E-value=1.5 Score=25.43 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 452 TYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 452 ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
+|..|-+.|.+.|++++|..++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777777777777777744
No 243
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.43 E-value=22 Score=32.18 Aligned_cols=64 Identities=3% Similarity=-0.047 Sum_probs=34.3
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCcCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011378 166 LVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEK-GCVMDVVTYNTILNGLCRAKMLTEADDLFN 229 (487)
Q Consensus 166 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 229 (487)
-.++..+...+|+.+++.+++..-.++++..... +..-|...|..+|..-.+.|+..-..++..
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3444555555555555555555555555554433 344455555555555555555555544443
No 244
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=87.20 E-value=25 Score=32.58 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=54.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHH---HHHhcCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 011378 29 DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLIN---GLCKKGRCDRAKEVLDEMLQMGLSPDTATYNT 105 (487)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 105 (487)
|+.-.-.+-+.+.-.|.+..|+.-|....+ .|+..|.++.+ .|...|.-..|+.=+.+..+. .||-..-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 333344566667777788888877776654 34455655543 455566666666666665543 455322110
Q ss_pred -HHHHHHccCChhHHHHHHHHHHHC
Q 011378 106 -LLVESCRKENMSEAEEIFCEMSRR 129 (487)
Q Consensus 106 -ll~~~~~~~~~~~a~~~~~~m~~~ 129 (487)
--..+.+.|.++.|..=|+...++
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQH 135 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhc
Confidence 112345677777777777777654
No 245
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.57 E-value=11 Score=27.95 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 011378 118 EAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIIN 178 (487)
Q Consensus 118 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 178 (487)
+..+-++.+....+.|++....+.+.+|-|.+++..|.++|+-.+.+ +.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45555666667777788888888888888888888888888877653 1222225655554
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.39 E-value=11 Score=30.09 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=55.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCC-CccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 011378 28 PDTVTYNTLINAYCREGFLEEAFQLMNSMSGK-GLKP-GVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNT 105 (487)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 105 (487)
|....|+.-..++ +.|++++|.+.|+.+..+ ...| ....--.++.++.+.++++.|...+++..+..-.--..-|..
T Consensus 9 ~~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 9 SPQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3445566555554 789999999999988764 1211 223445678889999999999999998876532111244555
Q ss_pred HHHHHHc
Q 011378 106 LLVESCR 112 (487)
Q Consensus 106 ll~~~~~ 112 (487)
.+.+++.
T Consensus 88 Y~~gL~~ 94 (142)
T PF13512_consen 88 YMRGLSY 94 (142)
T ss_pred HHHHHHH
Confidence 5555544
No 247
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.20 E-value=13 Score=31.21 Aligned_cols=59 Identities=22% Similarity=0.377 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHH
Q 011378 313 YGILINGYCSMGHVTEAFRLWYEMVGKGIKPTL--VSCNTIIKGYCRSGDASKADEFLSKM 371 (487)
Q Consensus 313 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m 371 (487)
+..+...|++.|+.+.|.+.+..+......+.. ..+-.+|+...-.+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444445555555555555555554444333322 22344445555555555554444443
No 248
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.19 E-value=24 Score=31.40 Aligned_cols=153 Identities=11% Similarity=0.148 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 011378 292 EKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKM 371 (487)
Q Consensus 292 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 371 (487)
+...+.|++-. ....++++..+.-.+.+.-...++.+.++..-+.+......|.+.-...||.+.|...++..
T Consensus 166 ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44556665432 12345666666667778888888888888766677777888888888999999999999988
Q ss_pred HHCCCCCChhhHHHHHH-----HHhccCCHHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHhcCChHHHHHHHHHHHHc
Q 011378 372 VSEGVDPDSISYNTLIN-----GFVREENMDKAFALVSKMENQGLVPDVITYN--VILTGFCRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 372 ~~~g~~p~~~~~~~li~-----~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~ 444 (487)
.+..-+.|-.+++.++. .|.-++++..|...+++..... ..|+..-| +|+-.| -|+..+|.+.++.|+..
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc
Confidence 87665666666666653 3455677888888787765542 11222222 333333 57889999999999764
Q ss_pred CCCCCHHHHHHH
Q 011378 445 GLNPDRSTYTTL 456 (487)
Q Consensus 445 g~~p~~~ty~~l 456 (487)
.|...+=+++
T Consensus 316 --~P~~~l~es~ 325 (366)
T KOG2796|consen 316 --DPRHYLHESV 325 (366)
T ss_pred --CCccchhhhH
Confidence 4554444433
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.09 E-value=36 Score=33.35 Aligned_cols=82 Identities=12% Similarity=0.100 Sum_probs=55.9
Q ss_pred eeehHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHH
Q 011378 275 IVTYNTLIDGFCKVGEMEKANKLWADMISRKIS-PNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTL-VSCNTII 352 (487)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li 352 (487)
..+=..|-.+..+.|+.++|.+.++++.+..-. -.......|+.++...+.+.++..++..-.+...+.+. ..|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 334455777778889999999999998765322 24456678999999999999999998876443333332 2466544
Q ss_pred HHHH
Q 011378 353 KGYC 356 (487)
Q Consensus 353 ~~~~ 356 (487)
-.+.
T Consensus 339 LkaR 342 (539)
T PF04184_consen 339 LKAR 342 (539)
T ss_pred HHHH
Confidence 4433
No 250
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=85.92 E-value=34 Score=32.96 Aligned_cols=94 Identities=10% Similarity=0.120 Sum_probs=69.8
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 011378 16 MFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMG 95 (487)
Q Consensus 16 ~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 95 (487)
++=++++.. +.|+.+|-.||.-+...+..++..+++++|.. .++.=+..|..-|++=....++..+..+|.+.+...
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~-pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSS-PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC-CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 455556554 35888999999999999999999999999964 233344678888888777889999999999988765
Q ss_pred CCCCHHHHHHHHHHHHccC
Q 011378 96 LSPDTATYNTLLVESCRKE 114 (487)
Q Consensus 96 ~~~~~~~~~~ll~~~~~~~ 114 (487)
+. ...|...|.---+.+
T Consensus 107 l~--ldLW~lYl~YIRr~n 123 (660)
T COG5107 107 LN--LDLWMLYLEYIRRVN 123 (660)
T ss_pred cc--HhHHHHHHHHHHhhC
Confidence 44 555555555444444
No 251
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.91 E-value=18 Score=32.80 Aligned_cols=99 Identities=15% Similarity=0.150 Sum_probs=62.5
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHhcc---CCHHHHHHHHHHHHhCCCCC-CHh
Q 011378 342 KPTLVSCNTIIKGYCRSGDASKADEFLSKMVSE-GVDPDSISYNTLINGFVRE---ENMDKAFALVSKMENQGLVP-DVI 416 (487)
Q Consensus 342 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p-~~~ 416 (487)
+-|...|-.|=..|...|+.+.|..-|+...+. |-.|+ .+..+-.++... ..-.++..+|++.... .| |+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~--~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE--ILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHH
Confidence 456778888888888888888888888776543 33333 333333333322 2345666777776543 34 444
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011378 417 TYNVILTGFCRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 417 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 444 (487)
+-.-|...+..+|++.+|...++.|.+.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5555556777788888888887777654
No 252
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.78 E-value=20 Score=32.07 Aligned_cols=94 Identities=17% Similarity=0.249 Sum_probs=47.2
Q ss_pred chHHHHHHHHhcCChhhHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-CCCCC-HhHHHH
Q 011378 67 TYNSLINGLCKKGRCDRAKEVLDEMLQMG----LSPDTATYNTLLVESCRKENMSEAEEIFCEMSRR-GVAPD-IVSFST 140 (487)
Q Consensus 67 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~-~~~~~~ 140 (487)
.|+.-++.+ +.|++..|...|....+.. ..|+..-| |-.++...|+.++|..+|..+.+. +-.|- +..+--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455554443 3445666666555555432 23344444 455555666666666666555432 11111 123334
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 011378 141 LIGIFSRNGQLDRALMYFREMKS 163 (487)
Q Consensus 141 li~~~~~~g~~~~a~~~~~~m~~ 163 (487)
|-....+.|+.+.|...|++..+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 44555566666666666666554
No 253
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=85.73 E-value=28 Score=31.69 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHH
Q 011378 222 TEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADM 301 (487)
Q Consensus 222 ~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 301 (487)
.-+.++|+..... ...+.++.++-+.+.-+.-++. ++|+..+-..+-..+...|--+...-.-.++
T Consensus 184 ~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft~agL~elvey~~~q~ 249 (412)
T KOG2297|consen 184 SFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFTDAGLKELVEYHRNQQ 249 (412)
T ss_pred HHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 4466777776543 2456666666555444444333 3666666666666655554322211111111
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCh---hhHHHHHHHHHhcCChH-HHHHHHHHHHHCCC
Q 011378 302 ISRKISPNYISYGILINGYCSMGHVTEAFRLW-YEMVGKGIKPTL---VSCNTIIKGYCRSGDAS-KADEFLSKMVSEGV 376 (487)
Q Consensus 302 ~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~-~~m~~~~~~~~~---~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~ 376 (487)
. .+- --..-..|.+-..+...+++..... ++|++..++-.. ..|..++++---+.+-+ -|.+.++.+
T Consensus 250 ~-~~a--~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrhl----- 321 (412)
T KOG2297|consen 250 S-EGA--RKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL----- 321 (412)
T ss_pred H-HHH--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH-----
Confidence 0 000 0000112222223333455544443 456555544332 35777776654443222 133444433
Q ss_pred CCChhhHHHHHHHHhccCCHHHHH
Q 011378 377 DPDSISYNTLINGFVREENMDKAF 400 (487)
Q Consensus 377 ~p~~~~~~~li~~~~~~~~~~~a~ 400 (487)
.+|.-|+.+++..|+.+...
T Consensus 322 ----K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 ----KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred ----HhhhHHHHHHhcCChHHHHH
Confidence 35888888888888876543
No 254
>PHA02875 ankyrin repeat protein; Provisional
Probab=85.38 E-value=38 Score=32.95 Aligned_cols=68 Identities=12% Similarity=0.229 Sum_probs=33.9
Q ss_pred HHHHHHHcCCcCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHH
Q 011378 192 MRDEMLEKGCVMDVVT--YNTILNGLCRAKMLTEADDLFNEMLERGVFPDFY--TFTTLIHGHCKDGNMNKALNLF 263 (487)
Q Consensus 192 ~~~~m~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--t~~~li~~~~~~g~~~~a~~~~ 263 (487)
+++.+.+.|..|+... ..+.+...++.|+.+-+ +.+.+.|..|+.. ...+.+...+..|+.+.+..++
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 3444555676665433 23344445566666433 3344455544432 1223455566667766654444
No 255
>PRK15331 chaperone protein SicA; Provisional
Probab=85.35 E-value=14 Score=30.34 Aligned_cols=87 Identities=14% Similarity=0.001 Sum_probs=58.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHH
Q 011378 215 LCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKA 294 (487)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 294 (487)
+...|++++|..+|.-+.--+ +-|..-|..|-..|-..++.++|+..|...-.-.. -|...+-..-.+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 456788888888888776543 22444566666677778888888888876544332 2233333456677788888888
Q ss_pred HHHHHHHHh
Q 011378 295 NKLWADMIS 303 (487)
Q Consensus 295 ~~~~~~m~~ 303 (487)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888876655
No 256
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.29 E-value=62 Score=35.36 Aligned_cols=113 Identities=12% Similarity=0.153 Sum_probs=61.8
Q ss_pred CCChhhHHHHH----HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH--
Q 011378 342 KPTLVSCNTII----KGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDV-- 415 (487)
Q Consensus 342 ~~~~~~~~~li----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-- 415 (487)
.|+...+..+. +.+...+.+++|.-.|+..-+ ..--+.+|..+|++.+|..+-.+|... -|.
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 44544433333 333444555555555543221 122356666667777766666555321 121
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011378 416 ITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHD 474 (487)
Q Consensus 416 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~ 474 (487)
.+-..|+.-+..+++.-+|-++..+-.. .+..-+..|+....|++|.++..
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~s--------d~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLS--------DPEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhc--------CHHHHHHHHhhHhHHHHHHHHHH
Confidence 1225667777778888888777666432 23455666676777888877643
No 257
>PHA02875 ankyrin repeat protein; Provisional
Probab=85.16 E-value=39 Score=32.88 Aligned_cols=74 Identities=19% Similarity=0.182 Sum_probs=32.2
Q ss_pred hcCChhhHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcc--chHHHHHHHHhcCChh
Q 011378 7 KDHKIDSAKMFLCEMEQKGVYPDTVT--YNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVF--TYNSLINGLCKKGRCD 82 (487)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~~~ 82 (487)
+.|+++.+..++ +.|..|+... ..+.+..+++.|+.+-+ +.+.+.|..|+.. .....+...++.|+.+
T Consensus 11 ~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 11 LFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred HhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence 344544444333 3455444322 33455555566665433 3333445444322 1112233344556655
Q ss_pred hHHHHH
Q 011378 83 RAKEVL 88 (487)
Q Consensus 83 ~a~~~~ 88 (487)
.+..++
T Consensus 83 ~v~~Ll 88 (413)
T PHA02875 83 AVEELL 88 (413)
T ss_pred HHHHHH
Confidence 444433
No 258
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.24 E-value=58 Score=34.12 Aligned_cols=170 Identities=18% Similarity=0.236 Sum_probs=109.9
Q ss_pred hHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHH----HhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcC
Q 011378 4 ALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAY----CREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKG 79 (487)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 79 (487)
.+++...++-|..+- +.++. |..+...+.+.| -+.|++++|...+-+-... +.| ..+|+-|....
T Consensus 343 iL~kK~ly~~Ai~LA---k~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLA---KSQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHhhhHHHHHHHH---HhcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 344444444444433 23332 444445555544 4689999999887654321 122 34577777777
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHH
Q 011378 80 RCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFR 159 (487)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 159 (487)
....--.+++.+.+.|+. +...-+.||.+|.+.++.+...++.+.-. .|... .-....+..|-+.+-.+.|..+-.
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChHHHHHHHHH
Confidence 777888899999998875 44445789999999999998887776554 34332 123468888999999998887665
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 160 EMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEM 196 (487)
Q Consensus 160 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 196 (487)
.... .......+++ ..+++++|++.+..+
T Consensus 488 k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred Hhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 5433 3344455554 467788888887765
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=83.80 E-value=2.8 Score=24.21 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 417 TYNVILTGFCRQGRMHDSELILWRMI 442 (487)
Q Consensus 417 ~~~~li~~~~~~g~~~~a~~~~~~m~ 442 (487)
+|+.|-..|.+.|++++|..++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777788888888888888888754
No 260
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.70 E-value=0.61 Score=37.60 Aligned_cols=85 Identities=9% Similarity=0.193 Sum_probs=55.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCC
Q 011378 70 SLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNG 149 (487)
Q Consensus 70 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 149 (487)
.+|+.+.+.+.+.....+++.+...+..-+....+.++..|++.+..+...++++.. +......++..|-+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 356666667777777777777776665566777778888888887777777776621 1122235677777777
Q ss_pred CHHHHHHHHHHH
Q 011378 150 QLDRALMYFREM 161 (487)
Q Consensus 150 ~~~~a~~~~~~m 161 (487)
.++.+.-++..+
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 777776666654
No 261
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.51 E-value=0.97 Score=36.41 Aligned_cols=82 Identities=10% Similarity=0.161 Sum_probs=46.4
Q ss_pred hhhHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCCh
Q 011378 2 VNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRC 81 (487)
Q Consensus 2 i~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 81 (487)
|+.+-+.+.+.....+++.+...+...+....+.++..|++.++.+...++++. .+......+++.|-+.+.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcchH
Confidence 455556666777777777776655445566667777777777666666655541 1112334455555555555
Q ss_pred hhHHHHHHH
Q 011378 82 DRAKEVLDE 90 (487)
Q Consensus 82 ~~a~~~~~~ 90 (487)
+++.-++.+
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555554443
No 262
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.07 E-value=5.3 Score=29.58 Aligned_cols=59 Identities=15% Similarity=0.113 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011378 399 AFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLIN 458 (487)
Q Consensus 399 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~ 458 (487)
..+-+..+-...+.|++....+.+.+|.+-+++..|.++|+-.+.+-- +....|..++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lq 87 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHH
Confidence 333444444556677777777777777777777777777777664311 22225555443
No 263
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.97 E-value=13 Score=37.09 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=49.5
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHH
Q 011378 76 CKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRAL 155 (487)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 155 (487)
.+.|+++.|.++..+. -+..-|..|-.+..+.+++..|.+-|....+ |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 3455555555555442 2444556666666666666666665554332 445555555555555444
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011378 156 MYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRD 194 (487)
Q Consensus 156 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 194 (487)
.+-...++.| ..|...-+|...|+++++.+++.
T Consensus 713 ~la~~~~~~g------~~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 713 VLASLAKKQG------KNNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHhhc------ccchHHHHHHHcCCHHHHHHHHH
Confidence 4444444333 12233334445556665555543
No 264
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.94 E-value=11 Score=27.62 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 187 LEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEML 232 (487)
Q Consensus 187 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 232 (487)
.+..+-++.+....+.|++....+.+.+|-|.+++..|.++|+..+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444555555556666666666666666666666666665544
No 265
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=81.86 E-value=30 Score=29.10 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=89.5
Q ss_pred CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CcCChhh
Q 011378 131 VAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKG---CVMDVVT 207 (487)
Q Consensus 131 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~ 207 (487)
+.|+...--.|-+...+.|+..+|...|++....-+.-|..+.-.+-++....++...+...++.+.+.. -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 4577766667888899999999999999988876566777777788888888888888888888877643 2233 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011378 208 YNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKAL 260 (487)
Q Consensus 208 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~ 260 (487)
.-.+-..+...|..++|+.-|+..... .|++..-.-.-..+.+.|+.+++.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 334556777788888888888887764 455544333334456666655554
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.80 E-value=41 Score=30.66 Aligned_cols=102 Identities=10% Similarity=-0.001 Sum_probs=49.7
Q ss_pred ehHHHHHHHHccCCHH---HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011378 277 TYNTLIDGFCKVGEME---KANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIK 353 (487)
Q Consensus 277 ~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 353 (487)
+...++.+|...+..+ +|..+++.+.+.... ....+-.-+..+.+.++.+++.+++..|...- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4566666666666543 344455555433222 12233344555555667777777777776542 112233333443
Q ss_pred HHHh--cCChHHHHHHHHHHHHCCCCCCh
Q 011378 354 GYCR--SGDASKADEFLSKMVSEGVDPDS 380 (487)
Q Consensus 354 ~~~~--~~~~~~a~~~~~~m~~~g~~p~~ 380 (487)
.+.. ......+...+..+....+.|..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 3311 12334555556555554444443
No 267
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.70 E-value=25 Score=31.40 Aligned_cols=86 Identities=20% Similarity=0.202 Sum_probs=35.8
Q ss_pred hcCCHHHHHHHHHHHHHCCC--CCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC-hhhHHHHHHHHHhcCCHH
Q 011378 252 KDGNMNKALNLFDIMTQKSI--KPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKI-SPN-YISYGILINGYCSMGHVT 327 (487)
Q Consensus 252 ~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~-~~t~~~li~~~~~~~~~~ 327 (487)
++|++..|..-|....+..- .-....+-.|-.++...|++++|..+|..+.+..- .|- ...+--|-.+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 33445555555544443210 00112233455555555555555555555443211 111 122223333444445555
Q ss_pred HHHHHHHHHH
Q 011378 328 EAFRLWYEMV 337 (487)
Q Consensus 328 ~a~~~~~~m~ 337 (487)
+|...|+++.
T Consensus 233 ~A~atl~qv~ 242 (262)
T COG1729 233 EACATLQQVI 242 (262)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 268
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=81.53 E-value=14 Score=34.95 Aligned_cols=129 Identities=15% Similarity=0.098 Sum_probs=67.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC-CCCCee
Q 011378 207 TYNTILNGLCRAKMLTEADDLFNEMLE----RGVF-PDFYTFTTLIHGHCKDGNMNKALNLFDIMT----QKS-IKPDIV 276 (487)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~-~~~~t~~~li~~~~~~g~~~~a~~~~~~m~----~~~-~~~~~~ 276 (487)
.|..|-+.|.-.|+++.|....+.-.+ -|-. ..-..++.+-+++.-.|+++.|.+.|+.-. +-| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555555566777777665543221 1111 112346666677777777777777775322 111 111223
Q ss_pred ehHHHHHHHHccCCHHHHHHHHHHHHhC-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 277 TYNTLIDGFCKVGEMEKANKLWADMISR-----KISPNYISYGILINGYCSMGHVTEAFRLWYE 335 (487)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 335 (487)
..-+|-+.|.-..++++|+..+..-..- ...-....|=+|-.+|...|..++|+...+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4445666666666667776666432210 1111234455667777777777776665443
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=79.52 E-value=27 Score=34.16 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=44.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhc
Q 011378 351 IIKGYCRSGDASKADEFLSKMVSEG-VDPDSISYNTLINGFVREENMDKAFALVSKMENQGL-VPDVITYNVILTGFCRQ 428 (487)
Q Consensus 351 li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~ 428 (487)
+-.++-+.|+.++|.+.+++|.+.. ..-.......|+.++...+.+.++..++.+-.+..+ +.-..+|+..+-.+...
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 4444556677777777777776432 111233566677777777777777777777654322 12234566555444333
No 270
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=78.80 E-value=42 Score=28.88 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=23.3
Q ss_pred hcCChhHHHHHHHHHhhCC-CCC-CccchHHHHHHHHhcCChhhHHHHHHHHHH
Q 011378 42 REGFLEEAFQLMNSMSGKG-LKP-GVFTYNSLINGLCKKGRCDRAKEVLDEMLQ 93 (487)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (487)
+.|++.+|.+.|+.+...- -.| .....-.+..++-+.|+++.|...++++.+
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555666666665554421 111 011223344455555666666665555443
No 271
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.78 E-value=5.8 Score=23.38 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 451 STYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 451 ~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
.+++.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 455666666666666666666666554
No 272
>PRK15331 chaperone protein SicA; Provisional
Probab=78.65 E-value=30 Score=28.47 Aligned_cols=87 Identities=11% Similarity=-0.061 Sum_probs=40.2
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 011378 285 FCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKA 364 (487)
Q Consensus 285 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 364 (487)
+-..|++++|..+|+-+..... .+..-|..|-.+|-..+++++|...|......+. -|...+=-.-.+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 3445666666666655443221 1222344455555555666666665554333221 1111111233444555556666
Q ss_pred HHHHHHHHH
Q 011378 365 DEFLSKMVS 373 (487)
Q Consensus 365 ~~~~~~m~~ 373 (487)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 555555544
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.24 E-value=38 Score=28.13 Aligned_cols=137 Identities=13% Similarity=0.152 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-HHHHHH
Q 011378 31 VTYNTLINAYCREGFLEEAFQLMNSMSGKGLK--PGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTA-TYNTLL 107 (487)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll 107 (487)
..|..-++. ++.+..++|+.-|..+..-|.. |.. .--.+-...++.|+...|...|++.-..--.|-.. -..-|=
T Consensus 60 d~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvL-A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVL-ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHH-HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344444443 5677788888888888775543 211 11112234567888888888888876554344333 111111
Q ss_pred --HHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 011378 108 --VESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD 169 (487)
Q Consensus 108 --~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 169 (487)
..+...|.++++..-++.+...|-+.-...--.|--+--+.|++..|.+.|.++...--.|.
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 13457788888888888776555433333344555566788999999999888876544454
No 274
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=78.18 E-value=46 Score=29.18 Aligned_cols=125 Identities=19% Similarity=0.278 Sum_probs=66.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 011378 316 LINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREEN 395 (487)
Q Consensus 316 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 395 (487)
.+..|.+.-++.-|-...+.+ ++|-. +-.+++ -|.+..+.+-..++.+-....++.-+..-..+++ +...|+
T Consensus 136 tMEiyS~ttRFalaCN~s~KI----iEPIQ-SRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKI----IEPIQ-SRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHcccchhhhhhcchhhh----hhhHH-hhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 455555555555444433332 23322 222222 3555555555566666555666655554444444 456788
Q ss_pred HHHHHHHHHHHHh-CCC-----------CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011378 396 MDKAFALVSKMEN-QGL-----------VPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD 449 (487)
Q Consensus 396 ~~~a~~~~~~m~~-~g~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 449 (487)
..+|..-++.--. -|+ .|.+....-++..|.+ +++++|.+.++++-+.|..|.
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHH
Confidence 8887776654332 222 2555555555555443 466777777777767777664
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=77.71 E-value=45 Score=31.26 Aligned_cols=199 Identities=16% Similarity=0.135 Sum_probs=110.2
Q ss_pred ehHHHHHHHHccCCHHHHHHHHH-HHHhC-CCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC---hhh
Q 011378 277 TYNTLIDGFCKVGEMEKANKLWA-DMISR-KIS---PNYISYGILINGYCSMGHVTEAFRLWYEMVG-KGIKPT---LVS 347 (487)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~-~m~~~-~~~---p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~---~~~ 347 (487)
+|..+.++.++.|++++++..-- +|.-. ... --...|-.+-.++-+..++.+++.+-..-.. .|-.|. -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 55566666666666666544321 11100 000 0122344444555444555555554333221 122221 122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--CC-CC--ChhhHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCCCHhhH
Q 011378 348 CNTIIKGYCRSGDASKADEFLSKMVSE--GV-DP--DSISYNTLINGFVREENMDKAFALVSKMEN----QGLVPDVITY 418 (487)
Q Consensus 348 ~~~li~~~~~~~~~~~a~~~~~~m~~~--g~-~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~~ 418 (487)
.-++-.++...+.++++.+.|+...+- .+ .| ...+|..|-+.|....++++|.-+..+-.+ .|++-=...|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 233555666667788888888776532 11 12 235688888899999999998877655432 2322111223
Q ss_pred HH-----HHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHH----HHHHHHHhcCCHHHHHHHHHH
Q 011378 419 NV-----ILTGFCRQGRMHDSELILWRMIEKGLN-PDRSTYT----TLINGHVSQNNLKEAFRFHDE 475 (487)
Q Consensus 419 ~~-----li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~ty~----~l~~~~~~~~~~~~a~~~~~~ 475 (487)
.. +..++...|++.+|.+..++..+..++ -|+.+|. .+-+-|...|+.|.|+.-+++
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 33 345778899999999888886543222 3444444 456788888998888877665
No 276
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.16 E-value=6.5 Score=23.15 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 416 ITYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 416 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888887653
No 277
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=75.96 E-value=6.4 Score=23.91 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 452 TYTTLINGHVSQNNLKEAFRFHDEMLQ 478 (487)
Q Consensus 452 ty~~l~~~~~~~~~~~~a~~~~~~m~~ 478 (487)
++..+-..|.+.|++++|.+++++.++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677778888888888888887775
No 278
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=75.70 E-value=37 Score=26.69 Aligned_cols=91 Identities=16% Similarity=0.164 Sum_probs=50.8
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHH---HHHHhCCC
Q 011378 74 GLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLI---GIFSRNGQ 150 (487)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li---~~~~~~g~ 150 (487)
+++..|+.+.|++.|.+....- +-..+.||.--.++--.|+.++|++=+++..+..-.-+-..+.+.+ ..|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3456677777777776655421 2245666766666666677777776666655432222222333332 23455666
Q ss_pred HHHHHHHHHHHHHCC
Q 011378 151 LDRALMYFREMKSAG 165 (487)
Q Consensus 151 ~~~a~~~~~~m~~~g 165 (487)
-+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 677766666655544
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=75.33 E-value=65 Score=29.35 Aligned_cols=27 Identities=11% Similarity=-0.011 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 242 TFTTLIHGHCKDGNMNKALNLFDIMTQ 268 (487)
Q Consensus 242 t~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (487)
++-.-+..+.+.++.+.+.+++..|..
T Consensus 123 ~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 123 VFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 333344444445555566565555554
No 280
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.19 E-value=27 Score=30.19 Aligned_cols=54 Identities=19% Similarity=0.118 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 011378 315 ILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLS 369 (487)
Q Consensus 315 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 369 (487)
..++.+.+.+.+.+++...++-++.. +.|...=+.+++-+|-.|++++|..-++
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 33444444445555555444443321 2233333445555555555555544443
No 281
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=74.96 E-value=13 Score=23.31 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=21.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011378 426 CRQGRMHDSELILWRMIEKGLNPDRSTYTTLIN 458 (487)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~ 458 (487)
-++|.+.++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345566666666777766777666666666554
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.49 E-value=46 Score=27.24 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=28.5
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHHhCCCHHHHHHHHHHHHHC
Q 011378 110 SCRKENMSEAEEIFCEMSRRGVAPDIVSFST-LIGIFSRNGQLDRALMYFREMKSA 164 (487)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~ 164 (487)
..+.++.++++.+++-+... +|....... -...+.+.|+|++|..+|+++...
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34555666666666666442 343322221 223455667777777777776543
No 283
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=74.28 E-value=2.2 Score=33.30 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=20.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCC
Q 011378 461 VSQNNLKEAFRFHDEMLQRGFVPDD 485 (487)
Q Consensus 461 ~~~~~~~~a~~~~~~m~~~g~~p~~ 485 (487)
...|.-.+|.++|++|+++|-+||+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc
Confidence 3346667888999999999999986
No 284
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=74.17 E-value=64 Score=28.70 Aligned_cols=63 Identities=21% Similarity=0.347 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCC-CccchHHHHHHHHhcCChhhHHHHHHHHHH
Q 011378 30 TVTYNTLINAYCREGFLEEAFQLMNSMSGKG-LKP-GVFTYNSLINGLCKKGRCDRAKEVLDEMLQ 93 (487)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 93 (487)
...|+..++.+ +.|++++|.+.|+.+.... ..| ...+--.++-++-+.++++.|...+++...
T Consensus 35 ~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 35 SELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34455555554 6667777777777665431 111 122333344455566666666666666554
No 285
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=72.36 E-value=46 Score=26.21 Aligned_cols=91 Identities=18% Similarity=0.059 Sum_probs=49.7
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHH---HHHHhcCC
Q 011378 144 IFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTIL---NGLCRAKM 220 (487)
Q Consensus 144 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li---~~~~~~~~ 220 (487)
+.+..|+++.|++.|.+.... .+-....||.=.+++.-.|+.++|++=+++..+..-.-+...+.+.+ ..|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456677777777777765542 12234567777777777777777776666555432222222222222 22334566
Q ss_pred HHHHHHHHHHHHHcC
Q 011378 221 LTEADDLFNEMLERG 235 (487)
Q Consensus 221 ~~~a~~~~~~m~~~~ 235 (487)
.+.|..=|....+-|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666555444
No 286
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=72.36 E-value=36 Score=25.08 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 011378 117 SEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIIN 178 (487)
Q Consensus 117 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 178 (487)
=++.+-++.+....+.|++....+.+++|-|.+++..|.++|+-.+.+- ..+..+|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 3555666666677777888778888888888888888888888766321 113335555544
No 287
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.20 E-value=64 Score=32.47 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=49.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHH
Q 011378 322 SMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFA 401 (487)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 401 (487)
+.|+++.|.++..+. -+..-|..|-++....+++..|.+++..... |..|+-.+...|+.+-...
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 455666665554432 2334455666666666666666666654332 4455555555555544333
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 011378 402 LVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILW 439 (487)
Q Consensus 402 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 439 (487)
+-+.-++.| ..|.-.-+|-..|+++++.+++.
T Consensus 714 la~~~~~~g------~~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 714 LASLAKKQG------KNNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHhhc------ccchHHHHHHHcCCHHHHHHHHH
Confidence 333333333 22333444555566666655444
No 288
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=71.99 E-value=17 Score=21.95 Aligned_cols=16 Identities=31% Similarity=0.661 Sum_probs=5.8
Q ss_pred HHhcCChHHHHHHHHH
Q 011378 355 YCRSGDASKADEFLSK 370 (487)
Q Consensus 355 ~~~~~~~~~a~~~~~~ 370 (487)
|.+.|+.++|.+++++
T Consensus 11 ~~~~G~~~~A~~~~~~ 26 (44)
T PF13428_consen 11 YRRLGQPDEAERLLRR 26 (44)
T ss_pred HHHcCCHHHHHHHHHH
Confidence 3333333333333333
No 289
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=71.53 E-value=15 Score=22.95 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHCCCCCCHH
Q 011378 83 RAKEVLDEMLQMGLSPDTA 101 (487)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~ 101 (487)
++..++++|.+.|+..+..
T Consensus 20 ~~~~~l~~l~~~g~~is~~ 38 (48)
T PF11848_consen 20 EVKPLLDRLQQAGFRISPK 38 (48)
T ss_pred hHHHHHHHHHHcCcccCHH
Confidence 3333333333333333333
No 290
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=71.10 E-value=1.3e+02 Score=30.88 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=41.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHH
Q 011378 204 DVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLID 283 (487)
Q Consensus 204 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 283 (487)
+...|..-+..+...++.. ....+....+--..+.....-++..|.+.|..+.+.++.+.+-.+-+. ..-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHH
Confidence 3334555444444433222 444444444322334556677888888888888888888766554322 224556666
Q ss_pred HHHccCCHHHHHHHHHHH
Q 011378 284 GFCKVGEMEKANKLWADM 301 (487)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m 301 (487)
.+.+.|+.+.+..+-..+
T Consensus 447 ~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHH---------------
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 666777665554444333
No 291
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.98 E-value=64 Score=26.90 Aligned_cols=124 Identities=13% Similarity=0.144 Sum_probs=66.3
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHhH-HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChh-hHHHHHH--HHHhcCCH
Q 011378 111 CRKENMSEAEEIFCEMSRRGVAPDIVS-FSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNV-LYTIIIN--GYCRNGFV 186 (487)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~--~~~~~~~~ 186 (487)
++.+..++|+.-|.++.+.|...-.+. ---.-...+..|+-..|...|.+.-...-.|-.. -...|=. .+..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 345556666666666665554321110 0112234456677777777777765543333322 1111211 23456666
Q ss_pred HHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011378 187 LEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLER 234 (487)
Q Consensus 187 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (487)
++....++.+-..+.+.-...-..|--+-.+.|++..|...|..+.+.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666666665555444444444445555566778888888888776654
No 292
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=68.41 E-value=58 Score=27.86 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCChhhHHHHHHHHhccCCHHHH
Q 011378 327 TEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSE---GVDPDSISYNTLINGFVREENMDKA 399 (487)
Q Consensus 327 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~~~~~a 399 (487)
+.|.+.|-.+.+.+.--++..--.|-..|. ..|.+++..++....+. +-.+|+..+.+|.+.|.+.++++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444443333333333333333 23444444444433321 2234444444455555444444444
No 293
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=68.30 E-value=1.5e+02 Score=30.67 Aligned_cols=48 Identities=21% Similarity=0.149 Sum_probs=33.4
Q ss_pred ccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 011378 65 VFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKE 114 (487)
Q Consensus 65 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 114 (487)
..+| ++|-.|.|+|++++|.++..+..+ ........+...+..++...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCC
Confidence 3455 577888999999999999955443 34455667778888887753
No 294
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.21 E-value=1.1e+02 Score=28.72 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=40.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHCC
Q 011378 424 GFCRQGRMHDSELILWRMIEKGLNPDRSTYTTL----INGHVSQNNLKEAFRFHDEMLQRG 480 (487)
Q Consensus 424 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l----~~~~~~~~~~~~a~~~~~~m~~~g 480 (487)
.|.+-+.+.-+..++..|..+.+.--..||.++ |...+.-+..++|.+..-+|.+.|
T Consensus 286 rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 286 RFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 356677777888888888777776677777776 344445577788888887787665
No 295
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=66.07 E-value=1.3e+02 Score=28.93 Aligned_cols=49 Identities=18% Similarity=0.322 Sum_probs=30.7
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHhCCCHHHHHHHHH
Q 011378 110 SCRKENMSEAEEIFCEMSRRGVAPDIV----SFSTLIGIFSRNGQLDRALMYFR 159 (487)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~ 159 (487)
+|+.|+......+|+...+-|.. |.. .|+-|-++|.--+++++|+++..
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 67888888888888888777643 322 23334445555566677766543
No 296
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.67 E-value=8.3 Score=30.23 Aligned_cols=31 Identities=35% Similarity=0.526 Sum_probs=19.9
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011378 77 KKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVE 109 (487)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 109 (487)
..|.-..|-.+|..|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345555577777777777777764 4555554
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=65.10 E-value=22 Score=19.77 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 452 TYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 452 ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
.|..+-..|...|++++|+..+++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 45556666666666666666666654
No 298
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.93 E-value=1.7e+02 Score=29.91 Aligned_cols=117 Identities=13% Similarity=0.057 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHCCCC-CCeeehHHHHHH-HHccCCHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHhcC--
Q 011378 256 MNKALNLFDIMTQKSIK-PDIVTYNTLIDG-FCKVGEMEKANKLWADMIS-------RKISPNYISYGILINGYCSMG-- 324 (487)
Q Consensus 256 ~~~a~~~~~~m~~~~~~-~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~-------~~~~p~~~t~~~li~~~~~~~-- 324 (487)
...+...++.....|-. +-...-.....+ ++...+++.|...|+.... .+ +......+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45566666665554321 111111222233 4556677777777776654 33 2223444555555432
Q ss_pred ---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHHCCC
Q 011378 325 ---HVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCR-SGDASKADEFLSKMVSEGV 376 (487)
Q Consensus 325 ---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~ 376 (487)
+...|..++..-...|. |+....-..+.-... ..+...|.+++......|.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 44556666666555553 222222111111111 1345566666666665554
No 299
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.40 E-value=99 Score=27.99 Aligned_cols=87 Identities=13% Similarity=0.140 Sum_probs=52.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh--CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH---
Q 011378 280 TLIDGFCKVGEMEKANKLWADMIS--RKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKG--- 354 (487)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--- 354 (487)
.=|.+++..+++.++....-+--. .+++|. ..-.-|-.|.+-+....+.++-..-....-.-+...|.++..-
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 346777888888887665543322 233343 3344455577778877777776665544333444446665444
Q ss_pred --HHhcCChHHHHHHH
Q 011378 355 --YCRSGDASKADEFL 368 (487)
Q Consensus 355 --~~~~~~~~~a~~~~ 368 (487)
+.-.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 44568888887777
No 300
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.38 E-value=1e+02 Score=27.30 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCChhhHHHHHHHHhccCCHHHHHHH
Q 011378 348 CNTIIKGYCRSGDASKADEFLSKMVSEG---VDPDSISYNTLINGFVREENMDKAFAL 402 (487)
Q Consensus 348 ~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~~~~~~a~~~ 402 (487)
|-..|-.|....|+..|+.+++.--+.+ -.-|..+...|+.+| ..|+.+++.++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3344445555667777777776643321 122455666677666 45555555444
No 301
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=63.48 E-value=1.4e+02 Score=28.51 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 311 ISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS 373 (487)
Q Consensus 311 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (487)
..+..|.-+|.+.+++..|++..+.....+ ++|....=-==++|...|+++.|...|+++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345666677777777777777766655433 23332222222455556666667666666664
No 302
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.02 E-value=1.3e+02 Score=28.01 Aligned_cols=151 Identities=14% Similarity=0.110 Sum_probs=89.9
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHH----HHHHHhcCCHH
Q 011378 147 RNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTI----LNGLCRAKMLT 222 (487)
Q Consensus 147 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l----i~~~~~~~~~~ 222 (487)
-.|...+|...++++.+. .+.|...+..-=+++.-.|+.+.....+++.... ..+|.+.|.-+ --++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 346667777777777653 4556666666677788888887777777776543 12344333322 22334678888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCeeehHHHHHHHHccCCHHHHHHHHH
Q 011378 223 EADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQK---SIKPDIVTYNTLIDGFCKVGEMEKANKLWA 299 (487)
Q Consensus 223 ~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (487)
+|++.-++..+-+ +.|.+.-.+.-+.+--.|+.+++.+.-..-... +.-.-..-|-...-.+...+.++.|+.+|.
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888877766543 346666677777777788888887654322110 000001112222233455678888888885
Q ss_pred H
Q 011378 300 D 300 (487)
Q Consensus 300 ~ 300 (487)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
No 303
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=62.63 E-value=1.1e+02 Score=27.17 Aligned_cols=52 Identities=27% Similarity=0.349 Sum_probs=24.9
Q ss_pred ccCChhHHHHHHHHHHHCCC-CC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 011378 112 RKENMSEAEEIFCEMSRRGV-AP-DIVSFSTLIGIFSRNGQLDRALMYFREMKS 163 (487)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 163 (487)
+.|++++|.+.|+.+..+.. .| ...+.-.++-++-+.++.+.|+...++...
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45555555555555543211 11 122223344445556666666655555544
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=61.78 E-value=89 Score=25.64 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=7.0
Q ss_pred ccCChhHHHHHHHHH
Q 011378 112 RKENMSEAEEIFCEM 126 (487)
Q Consensus 112 ~~~~~~~a~~~~~~m 126 (487)
+.|++.+|..+|+++
T Consensus 56 ~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 56 VRGDWDDALRLLREL 70 (160)
T ss_pred HhCCHHHHHHHHHHH
Confidence 344444444444444
No 305
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=61.19 E-value=18 Score=22.23 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=15.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 011378 351 IIKGYCRSGDASKADEFLSKMVSE 374 (487)
Q Consensus 351 li~~~~~~~~~~~a~~~~~~m~~~ 374 (487)
|-++|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445666777777777777766643
No 306
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=60.95 E-value=54 Score=27.52 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=12.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHH
Q 011378 72 INGLCKKGRCDRAKEVLDEMLQ 93 (487)
Q Consensus 72 i~~~~~~~~~~~a~~~~~~m~~ 93 (487)
+-.|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3445566666666666665544
No 307
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=60.67 E-value=1.4e+02 Score=28.62 Aligned_cols=17 Identities=29% Similarity=0.174 Sum_probs=11.1
Q ss_pred hHHhcCChhhHHHHHHH
Q 011378 4 ALCKDHKIDSAKMFLCE 20 (487)
Q Consensus 4 ~~~~~~~~~~a~~~~~~ 20 (487)
.|.+.|++..|..-+++
T Consensus 217 ~~fK~gk~~~A~~~Yer 233 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYER 233 (397)
T ss_pred HHHhhchHHHHHHHHHH
Confidence 45666777777666555
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.30 E-value=2.3e+02 Score=29.81 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=35.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC
Q 011378 72 INGLCKKGRCDRAKEVLDEMLQMGLSP---DTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRN 148 (487)
Q Consensus 72 i~~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 148 (487)
|+-+.+.+.+++|++..+... |..| -...+..+|..+.-.+++++|..+.-.|... +..-|---+..++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 334445555555555544322 2223 2334455555555556666665555555332 233344444444444
Q ss_pred CCHH
Q 011378 149 GQLD 152 (487)
Q Consensus 149 g~~~ 152 (487)
++..
T Consensus 437 ~~l~ 440 (846)
T KOG2066|consen 437 DQLT 440 (846)
T ss_pred cccc
Confidence 4443
No 309
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=59.91 E-value=1.1e+02 Score=26.18 Aligned_cols=79 Identities=6% Similarity=-0.019 Sum_probs=50.0
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCHH
Q 011378 111 CRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSA---GLVPDNVLYTIIINGYCRNGFVL 187 (487)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~~~~~ 187 (487)
.....-+.|.+.|-++...+.--++. .-..+..|.-..+.+++..++....+. +-.+|...+.+|.+.+.+.++.+
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~e-lq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAE-LQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33434566777777776655444443 334444444567777777777766542 22567778888888888888887
Q ss_pred HHH
Q 011378 188 EAL 190 (487)
Q Consensus 188 ~a~ 190 (487)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 764
No 310
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=59.59 E-value=1.5e+02 Score=27.53 Aligned_cols=166 Identities=13% Similarity=0.098 Sum_probs=86.9
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011378 114 ENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMR 193 (487)
Q Consensus 114 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 193 (487)
++.+....+++.+++.+..|= |..+ +. +..+..|...++.|..+ +...+++-.+..
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~---Ye~l----ce---------------~~~i~~D~~~l~~m~~~--neeki~eld~~i 91 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPL---YEYL----CE---------------SLVIKLDQDLLNSMKKA--NEEKIKELDEKI 91 (393)
T ss_pred cCHHHHHHHHHHHHhcccchH---HHHH----Hh---------------hcceeccHHHHHHHHHh--hHHHHHHHHHHH
Confidence 355556666777777666552 2222 11 22334444444444432 222333333334
Q ss_pred HHHHHc-CCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHH
Q 011378 194 DEMLEK-GCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLER----GVFPDFYTFTTLIH-GHCKDGNMNKALNLFDIMT 267 (487)
Q Consensus 194 ~~m~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~t~~~li~-~~~~~g~~~~a~~~~~~m~ 267 (487)
+..+++ |=.--...+-....-||+.|+-+.|.+.+..-.++ |.+.|+.-+.+=+. .|....-+.+-++..+.+.
T Consensus 92 edaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~li 171 (393)
T KOG0687|consen 92 EDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLI 171 (393)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 444333 21112234555667788888888888887765543 56667655444332 2333333455555555565
Q ss_pred HCCCCCCe----eehHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011378 268 QKSIKPDI----VTYNTLIDGFCKVGEMEKANKLWADMISRK 305 (487)
Q Consensus 268 ~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 305 (487)
+.|-..+. .+|..+-.+- ..++.+|-.+|.+.....
T Consensus 172 E~GgDWeRrNRlKvY~Gly~ms--vR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 172 EEGGDWERRNRLKVYQGLYCMS--VRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HhCCChhhhhhHHHHHHHHHHH--HHhHHHHHHHHHHHcccc
Confidence 66654432 3455554333 346888888888876543
No 311
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=59.55 E-value=59 Score=26.22 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=30.5
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011378 403 VSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQN 464 (487)
Q Consensus 403 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~ 464 (487)
.+.+++.|++++.-= ..++..+.+.+..-.|+.+++++.+.+..-+..|.-.-++.+.+.|
T Consensus 9 ~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344455555544322 2334444444444556666666665555555555555555555444
No 312
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=59.09 E-value=57 Score=26.31 Aligned_cols=64 Identities=8% Similarity=0.030 Sum_probs=41.0
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 011378 121 EIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGF 185 (487)
Q Consensus 121 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 185 (487)
++...+++.|++++.. --.++..+.+.++.-.|.++++++++.+...+..|--.-|+.+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3456667778777664 346777777777778888888888877665555443333444444443
No 313
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=59.04 E-value=16 Score=19.18 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=5.2
Q ss_pred HHHhcCChHHHHH
Q 011378 424 GFCRQGRMHDSEL 436 (487)
Q Consensus 424 ~~~~~g~~~~a~~ 436 (487)
.+...|++++|+.
T Consensus 10 ~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 10 ALLAQGDPDEAER 22 (26)
T ss_pred HHHHcCCHHHHHH
Confidence 3334444444433
No 314
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.87 E-value=20 Score=21.95 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=12.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 011378 457 INGHVSQNNLKEAFRFHDEMLQ 478 (487)
Q Consensus 457 ~~~~~~~~~~~~a~~~~~~m~~ 478 (487)
-.+|..-|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3455555666666665555554
No 315
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.27 E-value=1.4e+02 Score=26.99 Aligned_cols=89 Identities=12% Similarity=0.086 Sum_probs=46.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHh--
Q 011378 140 TLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCR-- 217 (487)
Q Consensus 140 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-- 217 (487)
.=|.+++.-++|.+++...-+-=+.--+....+.-.-|-.|.|.+......++-..+.+.--.-+...|.++...|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 345666777777776643322211111111223334455566777776666666666554333344456666655543
Q ss_pred ---cCCHHHHHHHH
Q 011378 218 ---AKMLTEADDLF 228 (487)
Q Consensus 218 ---~~~~~~a~~~~ 228 (487)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 46677776665
No 316
>PRK11906 transcriptional regulator; Provisional
Probab=57.22 E-value=2e+02 Score=28.24 Aligned_cols=106 Identities=10% Similarity=0.091 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCChHHHHHHH
Q 011378 362 SKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDV---ITYNVILTGFCRQGRMHDSELIL 438 (487)
Q Consensus 362 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~ 438 (487)
.+|.++-+...+.+ .-|......+-.+..-.++++.|..+|++-.. +.||. ..|..++ +.-.|+.++|...+
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~--~~~~G~~~~a~~~i 395 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALV--HFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHH--HHHcCCHHHHHHHH
Confidence 34444444443322 12333333333333445557777777766554 34543 2233333 33356677776666
Q ss_pred HHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011378 439 WRMIE-KGLNPDRSTYTTLINGHVSQNNLKEAFRFH 473 (487)
Q Consensus 439 ~~m~~-~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~ 473 (487)
++..+ ...+-........++.|+.++ .++|++++
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 66322 222223334444555666544 55555554
No 317
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=56.86 E-value=1.6e+02 Score=26.86 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=37.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH-------HHHHHHHHhcCChHHHHHHHH
Q 011378 316 LINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSC-------NTIIKGYCRSGDASKADEFLS 369 (487)
Q Consensus 316 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-------~~li~~~~~~~~~~~a~~~~~ 369 (487)
+.+...+.+++++|...+.++..+|+..+..+. .-+.+.|.+.|+.....+.+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 344556778888888888888888888776543 345666677776666555444
No 318
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=56.81 E-value=70 Score=26.60 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=37.9
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHH
Q 011378 369 SKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHD 433 (487)
Q Consensus 369 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 433 (487)
+.+.+.|+.++..=. .++......++.-.|.++++.+.+.+-.++..|--.-+..+.+.|-+..
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 334566766554322 3344444445556778888888777766666665555566666665543
No 319
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=56.81 E-value=78 Score=24.72 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 011378 118 EAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKS 163 (487)
Q Consensus 118 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 163 (487)
+..+.++.+....+.|+....-..+.+|-|.+++..|.++|+-.+.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455566666677777777777778888888888888888877765
No 320
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=56.63 E-value=1.7e+02 Score=27.37 Aligned_cols=201 Identities=8% Similarity=0.015 Sum_probs=100.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHh
Q 011378 177 INGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGV----FPDFYTFTTLIHGHCK 252 (487)
Q Consensus 177 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~t~~~li~~~~~ 252 (487)
..+..+.|+++...+........ .++...|.++... +.++.+.+....+.....-. .....+|........+
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 45666777777644444333211 2344445554443 66777777777766654210 0111222222222222
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011378 253 DGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRL 332 (487)
Q Consensus 253 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~ 332 (487)
.-.+.+..++.+.....+- + ..+.....+.|++-. ....++..+|..++..=.. +
T Consensus 81 lq~L~Elee~~~~~~~~~~--~-------------~~~~~~l~~~W~~Rl-~~~~~~~~~~~~il~~R~~---------~ 135 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQ--N-------------PQDLKSLLKRWRSRL-PNMQDDFSVWEPILSLRRL---------V 135 (352)
T ss_pred HhHHHHHHHHHHHHHhhcc--c-------------HHHHHHHHHHHHHHH-HHhccchHHHHHHHHHHHH---------H
Confidence 2223333333222211100 0 222333344444332 2335666666555532100 0
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 333 WYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDP---DSISYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 333 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
+..+ ........+|..+.+.+.+.|.++.|...+..+...+..+ ++...-.-.......|+.++|...++...+
T Consensus 136 l~~~--~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 136 LSLI--LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred Hhcc--cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1100 1223445678888999999999999999999887654221 222222234445667888899988877765
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=55.88 E-value=1.1e+02 Score=24.80 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=29.0
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHhHHH-HHHHHHHhCCCHHHHHHHHHHHHHC
Q 011378 112 RKENMSEAEEIFCEMSRRGVAPDIVSFS-TLIGIFSRNGQLDRALMYFREMKSA 164 (487)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~ 164 (487)
...++++++.+++.|.-. +|+..-.. .-...+.+.|++++|.++|++..+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 356677777777766542 33322111 1223456677777777777777654
No 322
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=55.82 E-value=2.5e+02 Score=28.87 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=58.3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 011378 28 PDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLL 107 (487)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 107 (487)
+....++.+++.+ +.-+.+.-.++++++.. .+ ...+..++++.+..|-.....-+.+++....+.+ ...-..+.
T Consensus 308 ~~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~---~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~ 381 (574)
T smart00638 308 PAAAKFLRLVRLL-RTLSEEQLEQLWRQLYE---KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLA 381 (574)
T ss_pred chHHHHHHHHHHH-HhCCHHHHHHHHHHHHh---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHH
Confidence 3445667777766 45566777777777653 11 4567888888888888776666666666555433 22222222
Q ss_pred H--HHHccCChhHHHHHHHHHHHCCCCCCH
Q 011378 108 V--ESCRKENMSEAEEIFCEMSRRGVAPDI 135 (487)
Q Consensus 108 ~--~~~~~~~~~~a~~~~~~m~~~g~~p~~ 135 (487)
. ...+....+-...+++.+......+..
T Consensus 382 ~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~ 411 (574)
T smart00638 382 VLPHTARYPTEEILKALFELAESPEVQKQP 411 (574)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcCccccccH
Confidence 2 233445555555555555444455444
No 323
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.59 E-value=55 Score=25.53 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011378 398 KAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 398 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 444 (487)
+..+-+..+-...+.|++.....-+.+|.+-+++..|.++|+-.+.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444555556677788888888888888888888888888877643
No 324
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.13 E-value=1.7e+02 Score=26.78 Aligned_cols=147 Identities=14% Similarity=0.061 Sum_probs=69.0
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHH
Q 011378 144 IFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTE 223 (487)
Q Consensus 144 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~ 223 (487)
.....|++..|..+|....+..-. +...--.+..+|...|+.+.|..++..+-..--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345566666666666666543211 1334445566666667777766666654221111111111112223333333333
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCeeehHHHHHHHHccCCHHHH
Q 011378 224 ADDLFNEMLERGVFP-DFYTFTTLIHGHCKDGNMNKALNLFD-IMTQKSIKPDIVTYNTLIDGFCKVGEMEKA 294 (487)
Q Consensus 224 a~~~~~~m~~~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 294 (487)
...+-..... -| |...--.+-..+...|+.+.|.+.+= .+++..-.-|...-..|++.+.-.|.-+.+
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 3333333222 23 44444455556667777777766553 333322222344455666666655544433
No 325
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.96 E-value=91 Score=23.63 Aligned_cols=26 Identities=15% Similarity=0.501 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 011378 138 FSTLIGIFSRNGQLDRALMYFREMKS 163 (487)
Q Consensus 138 ~~~li~~~~~~g~~~~a~~~~~~m~~ 163 (487)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77788888888888888888887765
No 326
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=54.81 E-value=39 Score=31.30 Aligned_cols=47 Identities=15% Similarity=0.277 Sum_probs=34.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCHHHHHH
Q 011378 353 KGYCRSGDASKADEFLSKMVSEGVDP-DSISYNTLINGFVREENMDKAFA 401 (487)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~ 401 (487)
.-|.+.|.+++|..++..-+. +.| +.+++..-..+|.+...+..|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 567888888888888876543 345 67777777778888877776654
No 327
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=54.73 E-value=1.3e+02 Score=25.29 Aligned_cols=219 Identities=18% Similarity=0.132 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCeeehHHHHHHHHccCCHHHHHH
Q 011378 219 KMLTEADDLFNEMLERGVF-PDFYTFTTLIHGHCKDGNMNKALNLFDIMTQK-SIKPDIVTYNTLIDGFCKVGEMEKANK 296 (487)
Q Consensus 219 ~~~~~a~~~~~~m~~~~~~-~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~ 296 (487)
+....+...+......... .....+......+...+....+...+...... ........+......+...+..+.+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444433221 12455566666666677777776666554432 122233344455555555666666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 011378 297 LWADMISRKISPNYISYGILIN-GYCSMGHVTEAFRLWYEMVGKGIKP----TLVSCNTIIKGYCRSGDASKADEFLSKM 371 (487)
Q Consensus 297 ~~~~m~~~~~~p~~~t~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m 371 (487)
.+.........+. ........ .+...|+++.+...+..... ..| ....+......+...++.+.+...+...
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 6666554333221 11222222 56666666666666666533 222 2222333333344556666666666655
Q ss_pred HHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 372 VSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPD-VITYNVILTGFCRQGRMHDSELILWRMI 442 (487)
Q Consensus 372 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 442 (487)
...........+..+-..+...++.+.+...+...... .|+ ...+..+...+...|..+++...+.+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 54322112344555555555556666666666555432 222 2222333333335555555555555544
No 328
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=54.02 E-value=50 Score=23.31 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=31.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 011378 427 RQGRMHDSELILWRMIEKGLNPD--RSTYTTLINGHVSQNNLKEAFRF 472 (487)
Q Consensus 427 ~~g~~~~a~~~~~~m~~~g~~p~--~~ty~~l~~~~~~~~~~~~a~~~ 472 (487)
.+.+..+|...+...+++--.|. ..++..++.+|++-|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777665433322 24777788888888888888776
No 329
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=53.85 E-value=1.2e+02 Score=26.40 Aligned_cols=77 Identities=12% Similarity=0.055 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHH
Q 011378 347 SCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQ--GLVPDVITYNVILTG 424 (487)
Q Consensus 347 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~ 424 (487)
|.+..++.+.+.+.++++....+.-.+.+ +.|.-+-..|+..++-.|++++|..-++..... ...+-..+|..+|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556777888889999988887765543 335556777899999999999999877766542 233445666666653
No 330
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=53.71 E-value=1.2e+02 Score=24.44 Aligned_cols=74 Identities=16% Similarity=0.145 Sum_probs=46.8
Q ss_pred HccCChhHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 011378 111 CRKENMSEAEEIFCEMSRRGVAP---DIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGF 185 (487)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 185 (487)
.+.|++++|.+.|+.+..+ .+. ....--.++.+|.+.++++.|...++.+.+....-....|...+.+++.-..
T Consensus 21 l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 3667788888877777654 111 2223345777888888888888888888775543334566666666554433
No 331
>PHA03100 ankyrin repeat protein; Provisional
Probab=53.21 E-value=2.4e+02 Score=27.97 Aligned_cols=232 Identities=14% Similarity=0.124 Sum_probs=107.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccc--hHHHHHH-----HHhcCChhhHHHHHHHHHHCCCCCCH---HHH
Q 011378 34 NTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFT--YNSLING-----LCKKGRCDRAKEVLDEMLQMGLSPDT---ATY 103 (487)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~-----~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~ 103 (487)
.+.+...++.|+.+-+..++ +.|..|+... ....+.. .+..+..+ +.+.+.+.|..++. ...
T Consensus 36 ~t~L~~A~~~~~~~ivk~Ll----~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~ 107 (480)
T PHA03100 36 VLPLYLAKEARNIDVVKILL----DNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGI 107 (480)
T ss_pred chhhhhhhccCCHHHHHHHH----HcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCC
Confidence 45666677778876655544 4565554422 1123333 34444433 44444555654432 223
Q ss_pred HHHHHHHH-ccCChhHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCChhh--HHHH
Q 011378 104 NTLLVESC-RKENMSEAEEIFCEMSRRGVAPDIVS--FSTLIGIFSRNG--QLDRALMYFREMKSAGLVPDNVL--YTII 176 (487)
Q Consensus 104 ~~ll~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~--~~~l 176 (487)
+.|..+.. ..|+.+- ++.+.+.|..++... -.+.+...++.| +.+.+ +.+.+.|..++... -.+.
T Consensus 108 tpL~~A~~~~~~~~~i----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv----~~Ll~~g~din~~d~~g~tp 179 (480)
T PHA03100 108 TPLLYAISKKSNSYSI----VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKIL----KLLIDKGVDINAKNRYGYTP 179 (480)
T ss_pred chhhHHHhcccChHHH----HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHH----HHHHHCCCCcccccCCCCCH
Confidence 33443332 5555443 444445665553321 224556666666 44433 33444565544321 1233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCcCChhh--------HHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCH---HHH
Q 011378 177 INGYCRNGFVLEALKMRDEMLEKGCVMDVVT--------YNTILNGLCRAKM--LTEADDLFNEMLERGVFPDF---YTF 243 (487)
Q Consensus 177 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--------~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~---~t~ 243 (487)
+...++.|.. ++.+.+.+.|..++... +.+.+...+..|+ .+. .+.+.+.|..++. .-.
T Consensus 180 L~~A~~~~~~----~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~i----v~~Ll~~g~din~~d~~g~ 251 (480)
T PHA03100 180 LHIAVEKGNI----DVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEV----VNYLLSYGVPINIKDVYGF 251 (480)
T ss_pred HHHHHHhCCH----HHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHH----HHHHHHcCCCCCCCCCCCC
Confidence 4445556644 34444555666554321 1334444455555 433 3444445554432 222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeee---hHHHHHHHHccCCHHHHH
Q 011378 244 TTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVT---YNTLIDGFCKVGEMEKAN 295 (487)
Q Consensus 244 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~ 295 (487)
+. ++..+..|+.+ +++.+.+.|..++... .+++ ....+.+..+-+.
T Consensus 252 Tp-L~~A~~~~~~~----iv~~Ll~~gad~n~~d~~g~tpl-~~A~~~~~~~iv~ 300 (480)
T PHA03100 252 TP-LHYAVYNNNPE----FVKYLLDLGANPNLVNKYGDTPL-HIAILNNNKEIFK 300 (480)
T ss_pred CH-HHHHHHcCCHH----HHHHHHHcCCCCCccCCCCCcHH-HHHHHhCCHHHHH
Confidence 23 34445556644 4445556666554322 2333 3334455544333
No 332
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.14 E-value=71 Score=27.14 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=22.0
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 411 LVPDVITYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 411 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
..|+...|..++.++...|+.++|..+..++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356777777777777777777777666666543
No 333
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=52.96 E-value=37 Score=18.58 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 452 TYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 452 ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
.|..+-..|...|++++|.+.+++.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34555566777777777777777655
No 334
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=52.69 E-value=5e+02 Score=31.48 Aligned_cols=315 Identities=11% Similarity=0.044 Sum_probs=162.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHH----HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHH
Q 011378 141 LIGIFSRNGQLDRALMYFREM----KSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLC 216 (487)
Q Consensus 141 li~~~~~~g~~~~a~~~~~~m----~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 216 (487)
+-.+--+++.+.+|+..++.- +.. ......|..+...|+..+++++..-+...-. .+... -.-|-...
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl-~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSL-YQQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccH-HHHHHHHH
Confidence 444666888899999888873 221 1123345555568999998888766554311 12222 23344557
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeee-hHHHHHHHHccCCHHHHH
Q 011378 217 RAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVT-YNTLIDGFCKVGEMEKAN 295 (487)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~ 295 (487)
..|++..|...|+.+.+.+ ++...+++-+++.....|.++..+...+....+. .+.... ++.=+.+-.+.+++|...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 7899999999999998754 2336678888887778888887776554333221 111111 222233336667777666
Q ss_pred HHHHHHHhCCCCCChhhHHHH-----HHHHHhcCCHHH--HHHHHHHH-----HhCCCCCC-hhhHHHHHHHHHhcCChH
Q 011378 296 KLWADMISRKISPNYISYGIL-----INGYCSMGHVTE--AFRLWYEM-----VGKGIKPT-LVSCNTIIKGYCRSGDAS 362 (487)
Q Consensus 296 ~~~~~m~~~~~~p~~~t~~~l-----i~~~~~~~~~~~--a~~~~~~m-----~~~~~~~~-~~~~~~li~~~~~~~~~~ 362 (487)
.... .+ +..+|... +-..-+...+.. ..+..++. ...+..-+ ...|+.+++.+.-..-..
T Consensus 1539 ~~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1539 SYLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred hhhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 6544 11 22333332 111111121111 11111111 11111211 134555554443221111
Q ss_pred HHHHHHHHHHHCCCCCChhh------HHH---HHHHHhccCCHHHHHH--HHHHHHhCCCCCC-HhhHHHHHHHHHhcCC
Q 011378 363 KADEFLSKMVSEGVDPDSIS------YNT---LINGFVREENMDKAFA--LVSKMENQGLVPD-VITYNVILTGFCRQGR 430 (487)
Q Consensus 363 ~a~~~~~~m~~~g~~p~~~~------~~~---li~~~~~~~~~~~a~~--~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 430 (487)
..+.+ .++.++..+ |.. ....+.+..+.-.|.+ +++.-+..+++.. ..+|-....-...+|+
T Consensus 1612 ~~~~l------~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1612 SIEEL------KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred HHHHh------hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 11111 123332221 111 1112222111111111 1111111133332 3568888888888999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011378 431 MHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQRGF 481 (487)
Q Consensus 431 ~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 481 (487)
++.|...+-+..+.+ -...+-....-....|+-..|+.++++-....+
T Consensus 1686 ~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 999988766655543 345566677888999999999999999875443
No 335
>PRK09462 fur ferric uptake regulator; Provisional
Probab=52.31 E-value=91 Score=25.17 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=32.0
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 011378 369 SKMVSEGVDPDSISYNTLINGFVRE-ENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRM 431 (487)
Q Consensus 369 ~~m~~~g~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 431 (487)
+.+.+.|..++..= ..++...... +..-.|.++++.+.+.+-..+..|.-..+..+...|-+
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455566555432 2233333332 34556777777777666455555544444555555543
No 336
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.25 E-value=29 Score=31.62 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 011378 138 FSTLIGIFSRNGQLDRALMYFREMKSAGLV 167 (487)
Q Consensus 138 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 167 (487)
|+..|....+.|++++|+.++++.+..|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445666666666666666666666665544
No 337
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=52.06 E-value=1.6e+02 Score=27.42 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhhHH--HHHHHHHhcCChHHHHHHHHHHHH-----CCCCCChh-
Q 011378 313 YGILINGYCSMGHVTEAFRLWYEMVGK---GIKPTLVSCN--TIIKGYCRSGDASKADEFLSKMVS-----EGVDPDSI- 381 (487)
Q Consensus 313 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~- 381 (487)
...++...-+.++.++|.+..+++... --.|+.+.|. .+...+...||..++.+.+.+..+ .|++|++.
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 344555555666777777777776642 2345555443 334445566777777777777665 56666443
Q ss_pred hHHHHHHHH
Q 011378 382 SYNTLINGF 390 (487)
Q Consensus 382 ~~~~li~~~ 390 (487)
.|..+-+-|
T Consensus 158 ~fY~lssqY 166 (380)
T KOG2908|consen 158 SFYSLSSQY 166 (380)
T ss_pred hHHHHHHHH
Confidence 344444444
No 338
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=52.01 E-value=1.7e+02 Score=25.86 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=42.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccC
Q 011378 210 TILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVG 289 (487)
Q Consensus 210 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 289 (487)
..|..|.+.-++..|...+.+..+ | ..+- ..|--|.+..+.+--.++.+..+..+++-+..-..+++ +...|
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiE----P-IQSR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~G 206 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIE----P-IQSR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQG 206 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhh----h-HHhh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccc
Confidence 345556666666666555554432 1 1111 22223445555454455555555566665555555554 45567
Q ss_pred CHHHHHHHHHH
Q 011378 290 EMEKANKLWAD 300 (487)
Q Consensus 290 ~~~~a~~~~~~ 300 (487)
+...|...++.
T Consensus 207 DMRQalNnLQs 217 (333)
T KOG0991|consen 207 DMRQALNNLQS 217 (333)
T ss_pred hHHHHHHHHHH
Confidence 77776665543
No 339
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=51.94 E-value=99 Score=25.70 Aligned_cols=58 Identities=12% Similarity=0.065 Sum_probs=25.1
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcC
Q 011378 21 MEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKG 79 (487)
Q Consensus 21 ~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 79 (487)
++..|++++..- -.++..+......-.|.++++.+.+.+..++..|.-.-|+.+.+.|
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 344454443321 2344444444444455555555555444444444333344444443
No 340
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.39 E-value=1.2e+02 Score=25.65 Aligned_cols=62 Identities=11% Similarity=0.170 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHCCCCCCH--hH-----HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011378 116 MSEAEEIFCEMSRRGVAPDI--VS-----FSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGY 180 (487)
Q Consensus 116 ~~~a~~~~~~m~~~g~~p~~--~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 180 (487)
++.|+.+|+.+.+.--.|.. .. --..+-.|.++|.+++|.+++++.-+ .|+......-|...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~I 153 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHH
Confidence 55667777766654333311 11 12356689999999999999998876 34444433333333
No 341
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.28 E-value=1.8e+02 Score=25.91 Aligned_cols=205 Identities=12% Similarity=0.111 Sum_probs=90.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011378 33 YNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCR 112 (487)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 112 (487)
|.---.+|-...+++.|...+..-.. +..-|..-|. ....++.|.-+..+|... .--...|+.-...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 44445556566666666665544321 1111111121 122234444444444431 1112345555666667
Q ss_pred cCChhHHHHHHHHHHH--CCCCCCH--hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 011378 113 KENMSEAEEIFCEMSR--RGVAPDI--VSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLE 188 (487)
Q Consensus 113 ~~~~~~a~~~~~~m~~--~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 188 (487)
+|.++.|...++..-+ .++.|+. ..|.--+...-..++...|.+++.+. -+.+++....++
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~---------------sr~lVrl~kf~E 168 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC---------------SRVLVRLEKFTE 168 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh---------------hhHhhhhHHhhH
Confidence 7776666666655432 2334432 23333344444444444444443332 233444444444
Q ss_pred HHHHHHHHHHcC--C--cCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHH
Q 011378 189 ALKMRDEMLEKG--C--VMDV-VTYNTILNGLCRAKMLTEADDLFNEMLERG---VFPDFYTFTTLIHGHCKDGNMNKAL 260 (487)
Q Consensus 189 a~~~~~~m~~~g--~--~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~t~~~li~~~~~~g~~~~a~ 260 (487)
+...+.+-..-. + -++. ..|-..|-.+.-..++..|++++++--+.+ -.-+..+...||.+| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 433322211000 0 0111 112333334445567777777776643322 122455666777665 455666655
Q ss_pred HHH
Q 011378 261 NLF 263 (487)
Q Consensus 261 ~~~ 263 (487)
.++
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 544
No 342
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=51.16 E-value=1.5e+02 Score=24.91 Aligned_cols=186 Identities=19% Similarity=0.088 Sum_probs=85.5
Q ss_pred CChhHHHHHHHHHhhCCCC-CCccchHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChhHHHH
Q 011378 44 GFLEEAFQLMNSMSGKGLK-PGVFTYNSLINGLCKKGRCDRAKEVLDEMLQM-GLSPDTATYNTLLVESCRKENMSEAEE 121 (487)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~ 121 (487)
+....+...+......... .....+......+...+.+..+...+...... ........+..........++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444444444444332211 12344555556666666777666666665432 222334444445555555566666666
Q ss_pred HHHHHHHCCCCCCHhHHHHHHH-HHHhCCCHHHHHHHHHHHHHCCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 122 IFCEMSRRGVAPDIVSFSTLIG-IFSRNGQLDRALMYFREMKSAGLVP----DNVLYTIIINGYCRNGFVLEALKMRDEM 196 (487)
Q Consensus 122 ~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m 196 (487)
.+.........+.. ....... .+...|+++.+...+.+... ..| ....+......+...++.+.+...+...
T Consensus 117 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALALDPDPDL-AEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcCCCCcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 66666554333211 1112222 56666667776666666533 222 1122222222233444555555444444
Q ss_pred HHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 197 LEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEML 232 (487)
Q Consensus 197 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 232 (487)
...........+..+-..+...+.++.+...+....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 229 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKAL 229 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 332211122333444444444444444444444443
No 343
>PRK14136 recX recombination regulator RecX; Provisional
Probab=50.59 E-value=2.1e+02 Score=26.42 Aligned_cols=86 Identities=12% Similarity=0.093 Sum_probs=45.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 011378 307 SPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTL 386 (487)
Q Consensus 307 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 386 (487)
.|-...++..+..|....+- -.++.+.+.+.|+.+ +....+++.+.+.|+.-|..--..+
T Consensus 159 ~~~~~lk~kAL~lLSrReRS--e~ELr~KL~kkG~~e------------------e~IE~VIerLke~gYLDDeRFAesy 218 (309)
T PRK14136 159 RPARSLKGRALGYLSRREYS--RAELARKLAPYADES------------------DSVEPLLDALEREGWLSDARFAESL 218 (309)
T ss_pred ccHHHHHHHHHHHhhccccc--HHHHHHHHHHcCCCH------------------HHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 45556666666666554432 234445555555433 2344566666666666555544444
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCH
Q 011378 387 INGFVREENMDKAFALVSKMENQGLVPDV 415 (487)
Q Consensus 387 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 415 (487)
+.... +.+ --..+-.++...|+.++.
T Consensus 219 Vr~R~--~kk-Gp~rIrqELrQKGId~eL 244 (309)
T PRK14136 219 VHRRA--SRV-GSARIVSELKRHAVGDAL 244 (309)
T ss_pred HHHHh--hch-hHHHHHHHHHHcCCCHHH
Confidence 44322 221 123455677778876543
No 344
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=50.22 E-value=2.5e+02 Score=27.36 Aligned_cols=76 Identities=11% Similarity=0.157 Sum_probs=46.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011378 383 YNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVS 462 (487)
Q Consensus 383 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~ 462 (487)
-..|+.-|.-.|++.+|...++++.- .+--....+.+++.+.-+.|+-.....+++.....|+ .|-+.|-++|-+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 35567777777777777777766531 1122445677777777777776666666666655443 455666666655
Q ss_pred c
Q 011378 463 Q 463 (487)
Q Consensus 463 ~ 463 (487)
.
T Consensus 587 V 587 (645)
T KOG0403|consen 587 V 587 (645)
T ss_pred h
Confidence 3
No 345
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.01 E-value=88 Score=28.67 Aligned_cols=58 Identities=17% Similarity=0.347 Sum_probs=43.0
Q ss_pred HHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011378 260 LNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCS 322 (487)
Q Consensus 260 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 322 (487)
.++|+.|...++.|.-..+..+.-.+++.-.+.+...+|..+.+. ..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 567778888888888888888887888888888888888877653 3336666666653
No 346
>PLN03025 replication factor C subunit; Provisional
Probab=49.65 E-value=2.2e+02 Score=26.52 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=53.5
Q ss_pred HHHHHHHHH-HHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC-C-C----------CCCHhhHHHHHHHHHhc
Q 011378 362 SKADEFLSK-MVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQ-G-L----------VPDVITYNVILTGFCRQ 428 (487)
Q Consensus 362 ~~a~~~~~~-m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g-~----------~p~~~~~~~li~~~~~~ 428 (487)
++....++. ..+.|+..+......++..+ .|++..+...++..... + + .|....-..++.+. ..
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~-~~ 237 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC-LK 237 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH-Hc
Confidence 444444444 44568887777777777654 68999999888754321 1 1 12222233344444 35
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH
Q 011378 429 GRMHDSELILWRMIEKGLNPDRS 451 (487)
Q Consensus 429 g~~~~a~~~~~~m~~~g~~p~~~ 451 (487)
+++++|...+.+|...|+.|...
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~~~I 260 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSPTDI 260 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 67888888888888888776543
No 347
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=49.09 E-value=20 Score=20.36 Aligned_cols=22 Identities=14% Similarity=0.505 Sum_probs=13.3
Q ss_pred CHhHHHHHHHHHHhCCCHHHHH
Q 011378 134 DIVSFSTLIGIFSRNGQLDRAL 155 (487)
Q Consensus 134 ~~~~~~~li~~~~~~g~~~~a~ 155 (487)
+...|+.+-..+.+.|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555666666666666666654
No 348
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=48.87 E-value=1.1e+02 Score=22.83 Aligned_cols=50 Identities=14% Similarity=0.274 Sum_probs=21.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011378 179 GYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLER 234 (487)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (487)
.+...|++++|..+.+.+ .-||...|-+|-. .+.|..+....-+..|..+
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 344455555554443332 2344444443332 2344444444444444433
No 349
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=48.74 E-value=1.7e+02 Score=24.91 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--------------CCeeehHHHHHHHHccCCHHHHHHHHHH
Q 011378 243 FTTLIHGHCKDGNMNKALNLFDIMTQKSIK--------------PDIVTYNTLIDGFCKVGEMEKANKLWAD 300 (487)
Q Consensus 243 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--------------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 300 (487)
--+++..|.+.-++.++..+++.|.+..+. +--...|.-...|.+.|.+|.|..++++
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 346677788888888888888877654332 2223456667778888888888887763
No 350
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.61 E-value=30 Score=23.08 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=14.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 011378 455 TLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 455 ~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 35667777777777777766664
No 351
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.53 E-value=34 Score=31.19 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=32.4
Q ss_pred CCCCHH-HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 011378 96 LSPDTA-TYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFST 140 (487)
Q Consensus 96 ~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 140 (487)
+.||+. -|+.-|....+.||+++|++++++..+.|+.---.+|-.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 345554 456888888888888888888888888887654444433
No 352
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.48 E-value=80 Score=26.83 Aligned_cols=52 Identities=10% Similarity=0.101 Sum_probs=34.7
Q ss_pred hcCChHHHHHHHHHHHH-CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 357 RSGDASKADEFLSKMVS-EGVDPDSISYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 357 ~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
...+.+......+...+ ....|+..+|..++.++...|+.++|.....++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555544444444432 24568888888888888888888888887777765
No 353
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=48.48 E-value=2.3e+02 Score=29.25 Aligned_cols=93 Identities=8% Similarity=0.070 Sum_probs=53.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHH--H-HHHHHHHhCCCCCChhhHHHHHHH
Q 011378 280 TLIDGFCKVGEMEKANKLWADMISR--KISPNYISYGILINGYCSMGHVTEA--F-RLWYEMVGKGIKPTLVSCNTIIKG 354 (487)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~t~~~li~~~~~~~~~~~a--~-~~~~~m~~~~~~~~~~~~~~li~~ 354 (487)
+|+.+|...|++-.+.++++..... |-+.=...||..|+.+.+.|.++-. . ..-+.+....+.-|..||..|+++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 7777888888887777777766532 2233344566667777777765421 1 111122334466677777777766
Q ss_pred HHhcCChHHHHHHHHHHH
Q 011378 355 YCRSGDASKADEFLSKMV 372 (487)
Q Consensus 355 ~~~~~~~~~a~~~~~~m~ 372 (487)
-...-......-++.+.+
T Consensus 113 sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred hcChHhHHhccHHHHHHH
Confidence 655444444444444444
No 354
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=48.40 E-value=2.6e+02 Score=26.87 Aligned_cols=291 Identities=17% Similarity=0.185 Sum_probs=146.4
Q ss_pred HHHHHHHHHh--cCChhHHHHHHHHHhhCCCCCCccchHHHHHHHH--hcCChhhHHHHHHHHHHCCCCCCHHH--HHHH
Q 011378 33 YNTLINAYCR--EGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLC--KKGRCDRAKEVLDEMLQMGLSPDTAT--YNTL 106 (487)
Q Consensus 33 ~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~l 106 (487)
|..|-+++.- .||-..|.++-..-. +-+..|..-...++.+-+ -.|+++.|.+-|+-|.. .|.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~-~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARAS-KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHH-hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHH
Confidence 4455555543 456666665543321 113345555555665433 36788888888888764 233221 1122
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCChh--hHHHHHHHHHh
Q 011378 107 LVESCRKENMSEAEEIFCEMSRRGVAPD-IVSFSTLIGIFSRNGQLDRALMYFREMKSAG-LVPDNV--LYTIIINGYCR 182 (487)
Q Consensus 107 l~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~--~~~~ll~~~~~ 182 (487)
.-..-+.|+.+.|.+.-+..... .|. .-.+.+.+...+..|+|+.|+++.+.-++.. +.++.. .-..|+.+-+.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 22334557777776666555432 222 2345677777788888888888777766533 344432 22333333221
Q ss_pred ---cCCHHHHHHHHHHHHHcCCcCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011378 183 ---NGFVLEALKMRDEMLEKGCVMDVVTYN-TILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNK 258 (487)
Q Consensus 183 ---~~~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~ 258 (487)
..+...|...- .+...+.||..--. .--.++.+.|+...+-.+++.+=+..-+|+.. .+..+.+.|+ .
T Consensus 239 s~ldadp~~Ar~~A--~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--t 310 (531)
T COG3898 239 SLLDADPASARDDA--LEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--T 310 (531)
T ss_pred HHhcCChHHHHHHH--HHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--c
Confidence 11222332222 22233444433221 22356677788888888877776655444432 2223445554 2
Q ss_pred HHHHHHHHHH-CCCCCC-eeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHH
Q 011378 259 ALNLFDIMTQ-KSIKPD-IVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCS-MGHVTEAFRLWYE 335 (487)
Q Consensus 259 a~~~~~~m~~-~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~-~~~~~~a~~~~~~ 335 (487)
+++=++..++ ..++|| ...--++..+-...|++..|..--+.. ....|....|-.|-+.-.. .|+-+++....-+
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa--~r~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA--AREAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH--hhhCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 2222222211 123343 334445555556666666554433222 2335677777666665433 3777777776655
Q ss_pred HHhC
Q 011378 336 MVGK 339 (487)
Q Consensus 336 m~~~ 339 (487)
-.+.
T Consensus 389 av~A 392 (531)
T COG3898 389 AVKA 392 (531)
T ss_pred HhcC
Confidence 5443
No 355
>PRK09857 putative transposase; Provisional
Probab=48.00 E-value=1.3e+02 Score=27.60 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=28.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011378 383 YNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP 448 (487)
Q Consensus 383 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 448 (487)
+..++..-.+.++.++..++++.+.+. ........-.+..-+.+.|.-+++..+..+|...|+.+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 334444444555555555555555443 11122222234444444444444444445555444433
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.18 E-value=65 Score=22.75 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=23.2
Q ss_pred hcCChHHHHHHHHHHHHCCC-CCCh-hhHHHHHHHHhccCCHHHHHHH
Q 011378 357 RSGDASKADEFLSKMVSEGV-DPDS-ISYNTLINGFVREENMDKAFAL 402 (487)
Q Consensus 357 ~~~~~~~a~~~~~~m~~~g~-~p~~-~~~~~li~~~~~~~~~~~a~~~ 402 (487)
...+.+.|...++...++-. .|+. .+++.|+.+|+..|+++++.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555543322 2222 2455666666666666555543
No 357
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=47.06 E-value=49 Score=18.18 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 452 TYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 452 ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
.|..+-..|...|++++|.+.+++-.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555556666666666666666543
No 358
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=46.60 E-value=3.9e+02 Score=28.49 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=14.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHH
Q 011378 71 LINGLCKKGRCDRAKEVLDEML 92 (487)
Q Consensus 71 li~~~~~~~~~~~a~~~~~~m~ 92 (487)
++..+.|+|+.+.|.++.++-.
T Consensus 331 ~vyy~lR~G~lk~A~~~l~e~~ 352 (835)
T KOG2168|consen 331 LVYYLLRCGDLKAASQFLNENK 352 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh
Confidence 5556667777777777666654
No 359
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=46.57 E-value=2e+02 Score=25.16 Aligned_cols=73 Identities=23% Similarity=0.310 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC---CHhHHH--HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh
Q 011378 96 LSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAP---DIVSFS--TLIGIFSRNGQLDRALMYFREMKSAGLVPDN 170 (487)
Q Consensus 96 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 170 (487)
+.+...-+|.|+--|.-...+.+|.+.|.. +.|+.| +..+++ .-|....+.|+++.|.+..+++...-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 345555566666555555555566655543 344444 333333 4666778888888888887776543333343
No 360
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=46.19 E-value=90 Score=23.59 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 011378 349 NTIIKGYCRSGDASKADEFLSKMV 372 (487)
Q Consensus 349 ~~li~~~~~~~~~~~a~~~~~~m~ 372 (487)
..++..|...++.++|...+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 456667777788888877777653
No 361
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.99 E-value=2.3e+02 Score=25.59 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 346 VSCNTIIKGYCRSGDASKADEFLSKMV 372 (487)
Q Consensus 346 ~~~~~li~~~~~~~~~~~a~~~~~~m~ 372 (487)
..|..=|+.|....+-.....+++...
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 345555666666666666666665544
No 362
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=45.93 E-value=1.3e+02 Score=30.90 Aligned_cols=78 Identities=19% Similarity=0.118 Sum_probs=32.0
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011378 120 EEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEK 199 (487)
Q Consensus 120 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 199 (487)
....+++..+---.+...-.-++..|.+.|..+.|.++.+.+-..-+ ...-|..-|..+.+.|+...+..+.+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44444444332222444455677777777777777777776644321 2345666777777777776666665555543
No 363
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=45.90 E-value=23 Score=23.72 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCC
Q 011378 464 NNLKEAFRFHDEMLQRGFVPDDAF 487 (487)
Q Consensus 464 ~~~~~a~~~~~~m~~~g~~p~~~~ 487 (487)
=+++.|.+.|.++...|=-|.++|
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhc
Confidence 458888888888887776666655
No 364
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.57 E-value=2.7e+02 Score=28.07 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=27.6
Q ss_pred HHHHHHHHH-HHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 362 SKADEFLSK-MVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 362 ~~a~~~~~~-m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
++....++. +.+.|+..+......++... .|++..+...++++..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLA 223 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh
Confidence 344444444 34567776666666555443 5788888888777643
No 365
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=45.54 E-value=39 Score=18.27 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=15.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 011378 456 LINGHVSQNNLKEAFRFHDEMLQ 478 (487)
Q Consensus 456 l~~~~~~~~~~~~a~~~~~~m~~ 478 (487)
+-.++...|++++|.++++++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34456667777888777777764
No 366
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=45.52 E-value=1.6e+02 Score=29.04 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=14.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC
Q 011378 460 HVSQNNLKEAFRFHDEMLQRGF 481 (487)
Q Consensus 460 ~~~~~~~~~a~~~~~~m~~~g~ 481 (487)
|+..|....+-..|++|.+.|-
T Consensus 403 wlg~~eR~~~~l~fNe~V~~Ge 424 (545)
T TIGR01228 403 WLGYGERAKLGLAINEMVRSGE 424 (545)
T ss_pred hcCccHHHHHHHHHHHHHHcCC
Confidence 4445555566666899998874
No 367
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.17 E-value=3.2e+02 Score=27.61 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=22.0
Q ss_pred HHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 011378 371 MVSEGVDPDSISYNTLINGFVREENMDKAFALVSKME 407 (487)
Q Consensus 371 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 407 (487)
+.+.|+..+......++... .|++..|..++++..
T Consensus 191 l~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~i 225 (509)
T PRK14958 191 LKEENVEFENAALDLLARAA--NGSVRDALSLLDQSI 225 (509)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHH
Confidence 34557766665555555443 577888888776654
No 368
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.16 E-value=1.4e+02 Score=30.68 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=49.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhC--CCCCCccchHHHHHHHHhcCChhh--HHH-HHHHHHHCCCCCCHHHHHHHHHH
Q 011378 35 TLINAYCREGFLEEAFQLMNSMSGK--GLKPGVFTYNSLINGLCKKGRCDR--AKE-VLDEMLQMGLSPDTATYNTLLVE 109 (487)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~--a~~-~~~~m~~~g~~~~~~~~~~ll~~ 109 (487)
++..+|...|++..+.+++++...+ |-+.=...||.-|+.+.+.|.++- +.+ .=+.+++..+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 7888898999999888888887654 323333457777888888887652 111 11223344456677777776655
Q ss_pred HHc
Q 011378 110 SCR 112 (487)
Q Consensus 110 ~~~ 112 (487)
...
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 443
No 369
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.91 E-value=2.5e+02 Score=25.75 Aligned_cols=168 Identities=11% Similarity=0.060 Sum_probs=98.6
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHH
Q 011378 13 SAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEML 92 (487)
Q Consensus 13 ~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 92 (487)
...++++.... ++....+. -.......|++.+|..+|.......- -+...--.+...+...|+.+.|..+++.++
T Consensus 121 qlr~~ld~~~~---~~~e~~~~-~~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 121 QLRQFLDKVLP---AEEEEALA-EAKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred HHHHHHHHhcC---hHHHHHHH-HhhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 44445554432 23333333 33445688999999998887755321 123445567788889999999999999877
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHH-HHCCCCCCh
Q 011378 93 QMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAP-DIVSFSTLIGIFSRNGQLDRALMYFREM-KSAGLVPDN 170 (487)
Q Consensus 93 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~g~~~~~ 170 (487)
..--.........-|..+.+.....+...+-.+.-. .| |...--.+-..+...|+.+.|++.+-.+ ++.--.-|.
T Consensus 196 ~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~ 272 (304)
T COG3118 196 LQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG 272 (304)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc
Confidence 543222223322334444444444444444444433 34 4444445777888899999998755544 443233455
Q ss_pred hhHHHHHHHHHhcCCHHH
Q 011378 171 VLYTIIINGYCRNGFVLE 188 (487)
Q Consensus 171 ~~~~~ll~~~~~~~~~~~ 188 (487)
..-..|++.+.--|..+.
T Consensus 273 ~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 273 EARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHHHHHhcCCCCH
Confidence 566777777777774443
No 370
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.63 E-value=3.1e+02 Score=28.41 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=26.1
Q ss_pred HHHHHHHH-HHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 011378 363 KADEFLSK-MVSEGVDPDSISYNTLINGFVREENMDKAFALVSKME 407 (487)
Q Consensus 363 ~a~~~~~~-m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 407 (487)
+....++. +.+.|+..+......|+.. ..|++..+..++++..
T Consensus 187 ei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~i 230 (618)
T PRK14951 187 TVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAI 230 (618)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 33334433 3456777776666666653 3578888888776544
No 371
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.70 E-value=66 Score=21.40 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 011378 116 MSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKS 163 (487)
Q Consensus 116 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 163 (487)
++...++++.++.. +.|...--.+|.++...|++++|.++.+++..
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455555555432 12333333577888888888888887777653
No 372
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=43.48 E-value=2.4e+02 Score=27.64 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=10.0
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 011378 316 LINGYCSMGHVTEAFRLWYE 335 (487)
Q Consensus 316 li~~~~~~~~~~~a~~~~~~ 335 (487)
.|++|.+.+++++|..-+++
T Consensus 92 TIDSyTR~n~y~~A~~~l~~ 111 (480)
T TIGR01503 92 TIDAYTRQNRYDEAAVGIKE 111 (480)
T ss_pred eeecccccccHHHHHHHHHh
Confidence 34555555555555554443
No 373
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=43.43 E-value=1.4e+02 Score=22.36 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=25.4
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 011378 74 GLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRG 130 (487)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 130 (487)
.+...|+|.+|..+.+.+ ..||...|-+|-. .+.|-.+.+..-+..|-..|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 445566666666655544 2466665544422 34444444444444444443
No 374
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=43.40 E-value=80 Score=24.20 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011378 429 GRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQN 464 (487)
Q Consensus 429 g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~ 464 (487)
|++++....+=.+.. |...+...+...+++++++|
T Consensus 62 Ge~~~~~~~ll~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 62 GEYDDIYEALLKQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred CchHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 666666655555544 67778888888888888776
No 375
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=43.12 E-value=3.6e+02 Score=27.14 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=49.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHh
Q 011378 139 STLIGIFSRNGQLDRALMYFREMKSAGLVPDN-VLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCR 217 (487)
Q Consensus 139 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 217 (487)
..++.-|.+.+++++|..++..|.-.-..... ...+.+.+.+-+...-.+....++.....=..|....-.....-|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 45777888899999998888877542211110 12334445555555445555555555544443433333333333322
Q ss_pred cCCHHHHHHHHHHHHHc
Q 011378 218 AKMLTEADDLFNEMLER 234 (487)
Q Consensus 218 ~~~~~~a~~~~~~m~~~ 234 (487)
.-.+.|.++|..|.+.
T Consensus 492 -~V~~~aRRfFhhLLR~ 507 (545)
T PF11768_consen 492 -PVSDLARRFFHHLLRY 507 (545)
T ss_pred -HHHHHHHHHHHHHHHh
Confidence 2234455666665543
No 376
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=42.74 E-value=88 Score=20.88 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=7.5
Q ss_pred hcCCHHHHHHHHHHHH
Q 011378 182 RNGFVLEALKMRDEML 197 (487)
Q Consensus 182 ~~~~~~~a~~~~~~m~ 197 (487)
+.|++-+|.+++++.-
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 3445555555555544
No 377
>PHA02798 ankyrin-like protein; Provisional
Probab=42.31 E-value=3.7e+02 Score=26.91 Aligned_cols=162 Identities=9% Similarity=0.119 Sum_probs=76.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCc---cchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH---HHHHHHHH
Q 011378 36 LINAYCREGFLEEAFQLMNSMSGKGLKPGV---FTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTA---TYNTLLVE 109 (487)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~ 109 (487)
++..|....+. -.++++.+.++|..++. .-.+.|..++.....+....++.+.+.+.|..++.. -.+.|..+
T Consensus 39 ~~~~yl~~~~~--~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a 116 (489)
T PHA02798 39 IFQKYLQRDSP--STDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCL 116 (489)
T ss_pred HHHHHHhCCCC--CHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHH
Confidence 44434444332 22455566667776654 222333332221122334467777788888766543 23333333
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHhCCC---HHHHHHHHHHHHHCCCCCChhh---HHHHHHHHH
Q 011378 110 SCRKENMSEAEEIFCEMSRRGVAPDIVS--FSTLIGIFSRNGQ---LDRALMYFREMKSAGLVPDNVL---YTIIINGYC 181 (487)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~~~~---~~~ll~~~~ 181 (487)
+..+.. .-.+++..+.+.|..++... -.+.+..+++.|. ++- .+.+.+.|..++... ..+.+..+.
T Consensus 117 -~~~~~~-~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~v----v~~Ll~~gadin~~~~~~~~t~Lh~~~ 190 (489)
T PHA02798 117 -LSNGYI-NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEI----IKLLLEKGVDINTHNNKEKYDTLHCYF 190 (489)
T ss_pred -HHcCCc-ChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHH----HHHHHHhCCCcccccCcCCCcHHHHHH
Confidence 333322 23456666667777665432 1234555556555 333 334444565554321 112233333
Q ss_pred hcCCHHHHHHHHHHHHHcCCcCCh
Q 011378 182 RNGFVLEALKMRDEMLEKGCVMDV 205 (487)
Q Consensus 182 ~~~~~~~a~~~~~~m~~~g~~~~~ 205 (487)
+.+-...-.++++.+.+.|..++.
T Consensus 191 ~~~~~~~~~~ivk~Li~~Ga~i~~ 214 (489)
T PHA02798 191 KYNIDRIDADILKLFVDNGFIINK 214 (489)
T ss_pred HhccccCCHHHHHHHHHCCCCccc
Confidence 322111124566677777766544
No 378
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=42.30 E-value=1.3e+02 Score=22.65 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCC
Q 011378 314 GILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGD--ASKADEFLSKMVSEGV 376 (487)
Q Consensus 314 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~ 376 (487)
..++..|...++.++|..-+.++... .-.......++..+...++ .+....++..+...+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 45666777778888887777665322 1112233344444443322 2334445555554443
No 379
>PHA03100 ankyrin repeat protein; Provisional
Probab=42.12 E-value=3.6e+02 Score=26.75 Aligned_cols=241 Identities=12% Similarity=0.066 Sum_probs=116.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHH--HHHHHHH-----HHccCChhHHHHHHHHHHHCCCCCCHh---HHHH
Q 011378 71 LINGLCKKGRCDRAKEVLDEMLQMGLSPDTAT--YNTLLVE-----SCRKENMSEAEEIFCEMSRRGVAPDIV---SFST 140 (487)
Q Consensus 71 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~-----~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ 140 (487)
.+...++.|+.+ +++.+.+.|..|+... ..+.+.. ++..++.+ +.+.+.+.|..++.. ..+
T Consensus 38 ~L~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~t- 108 (480)
T PHA03100 38 PLYLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGIT- 108 (480)
T ss_pred hhhhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCc-
Confidence 344445666654 4555556677776532 2234444 44555443 445555667655332 233
Q ss_pred HHHHHH--hCCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhH--HHHHHH
Q 011378 141 LIGIFS--RNGQLDRALMYFREMKSAGLVPDNV--LYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTY--NTILNG 214 (487)
Q Consensus 141 li~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~ 214 (487)
.+...+ +.|+.+.+..++ +.|..++.. .-.+.+...++.|. .-.++++.+.+.|..++.... .+.+..
T Consensus 109 pL~~A~~~~~~~~~iv~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~ 182 (480)
T PHA03100 109 PLLYAISKKSNSYSIVEYLL----DNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHI 182 (480)
T ss_pred hhhHHHhcccChHHHHHHHH----HcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHH
Confidence 344444 677766555444 456555332 12344555555652 123455666677876654322 234455
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCe---eehHHHHH
Q 011378 215 LCRAKMLTEADDLFNEMLERGVFPDFY--------TFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDI---VTYNTLID 283 (487)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~~~~~--------t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~ 283 (487)
.+..|+.+-+. .+.+.|..|+.. .+.+.++..+..|+ ...++.+.+.+.|..++. .-.+.|..
T Consensus 183 A~~~~~~~iv~----~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~~ 256 (480)
T PHA03100 183 AVEKGNIDVIK----FLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLHY 256 (480)
T ss_pred HHHhCCHHHHH----HHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 56666554444 444556555422 11444555555555 112344455566665543 23444443
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011378 284 GFCKVGEMEKANKLWADMISRKISPNYIS---YGILINGYCSMGHVTEAFRLWYEMVGKGIK 342 (487)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~t---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 342 (487)
+ +..|+.+-+. .+.+.|..|+... .+.+ ...+..++.+ +++.+.+.|..
T Consensus 257 A-~~~~~~~iv~----~Ll~~gad~n~~d~~g~tpl-~~A~~~~~~~----iv~~Ll~~g~~ 308 (480)
T PHA03100 257 A-VYNNNPEFVK----YLLDLGANPNLVNKYGDTPL-HIAILNNNKE----IFKLLLNNGPS 308 (480)
T ss_pred H-HHcCCHHHHH----HHHHcCCCCCccCCCCCcHH-HHHHHhCCHH----HHHHHHhcCCC
Confidence 3 4556644333 3344565554432 1222 2223344443 44555556643
No 380
>PF14162 YozD: YozD-like protein
Probab=41.77 E-value=31 Score=21.64 Aligned_cols=18 Identities=39% Similarity=0.696 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHCCCCCCC
Q 011378 468 EAFRFHDEMLQRGFVPDD 485 (487)
Q Consensus 468 ~a~~~~~~m~~~g~~p~~ 485 (487)
-|..+++++.++|+.|++
T Consensus 13 IAefFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 13 IAEFFYHELVKRGYVPTE 30 (57)
T ss_pred HHHHHHHHHHHccCCCcH
Confidence 456678888888888864
No 381
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=41.09 E-value=3.4e+02 Score=26.14 Aligned_cols=120 Identities=13% Similarity=0.173 Sum_probs=56.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh-CCCCCCH-hhHHHHHHHHHhcC
Q 011378 352 IKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMEN-QGLVPDV-ITYNVILTGFCRQG 429 (487)
Q Consensus 352 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~-~~~~~li~~~~~~g 429 (487)
-+++.+.|++.++-.+++.+=+..-.|++. ++..+.+.|+. +..-+++.+. ..++|+- .+--....+-.-.|
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 355666677777777776665554444432 23334444442 2222222221 1234432 23333334444556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 011378 430 RMHDSELILWRMIEKGLNPDRSTYTTLINGHVS-QNNLKEAFRFHDEMLQR 479 (487)
Q Consensus 430 ~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~-~~~~~~a~~~~~~m~~~ 479 (487)
++..|+.--+.. ....|....|-.|-+--.. .|+-.++...+.+-.++
T Consensus 344 e~~~ARa~Aeaa--~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 344 EFSAARAKAEAA--AREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chHHHHHHHHHH--hhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 665554333322 1235666666666554333 36666665554444443
No 382
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.70 E-value=2.3e+02 Score=24.21 Aligned_cols=52 Identities=10% Similarity=0.189 Sum_probs=22.1
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011378 391 VREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 391 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 444 (487)
...|.+|.|...++.-.+.++.+ .....-=+.+...|+-.+|+.-+.+....
T Consensus 137 ~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 137 LQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 34455555555555443322111 11111223445555555555555554444
No 383
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=40.28 E-value=1.2e+02 Score=28.41 Aligned_cols=103 Identities=14% Similarity=0.149 Sum_probs=59.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 011378 248 HGHCKDGNMNKALNLFDIMTQKSIKP-DIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHV 326 (487)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~ 326 (487)
+-|++.|.+++|++.|..-. -+.| |.+++..-..+|.+...+..|+.=-.... ..=...+.+|.+.+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~i--a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai--------aLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI--AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI--------ALDKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhccchhHHHHHhhhhh--ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH--------HhhHHHHHHHHHHHHH
Confidence 67889999999998886432 2345 66777777778888877776654222211 1112346777776665
Q ss_pred HHHHHHHHHHHh-----CCCCCChhhHHHHHHHHHhcCChHH
Q 011378 327 TEAFRLWYEMVG-----KGIKPTLVSCNTIIKGYCRSGDASK 363 (487)
Q Consensus 327 ~~a~~~~~~m~~-----~~~~~~~~~~~~li~~~~~~~~~~~ 363 (487)
.+++....+-++ ..++|+. +-|-+.+.+.....+
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~---~ELkK~~a~i~Sl~E 213 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKN---IELKKSLARINSLRE 213 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCccc---HHHHHHHHHhcchHh
Confidence 555555544432 2345652 234444444444333
No 384
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=40.14 E-value=63 Score=25.59 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=34.2
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011378 415 VITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGH 460 (487)
Q Consensus 415 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~ 460 (487)
+.|...++.+. +.|-+.+...++++|.++|+..+..+|+.++.-.
T Consensus 110 ~GtlGvL~~ak-~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 110 TGTLGVLALAK-SKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred eehhHHHHHHH-HcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 34555555444 5678888889999999999999999998887643
No 385
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.02 E-value=1.9e+02 Score=26.59 Aligned_cols=58 Identities=12% Similarity=0.244 Sum_probs=36.9
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 011378 365 DEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCR 427 (487)
Q Consensus 365 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 427 (487)
.++++.+...++.|.-..|.=+.-.+...=.+.++..+++.+-. |..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 46677777777777766665555556666667777777776642 33336666666664
No 386
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.77 E-value=2.7e+02 Score=25.54 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=34.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 011378 105 TLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKS 163 (487)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 163 (487)
.++...-+.+++....+.+..++. ...-..-+......|++..|+++..+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 355556666666666666666642 33344567777788888888887777654
No 387
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.68 E-value=78 Score=24.08 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=28.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChH
Q 011378 386 LINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMH 432 (487)
Q Consensus 386 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 432 (487)
++......+..-.|.++++.+++.+..++..|.-..++.+.+.|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444445555667777777777665566666555556666666544
No 388
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=39.45 E-value=1.1e+02 Score=30.48 Aligned_cols=21 Identities=10% Similarity=0.270 Sum_probs=12.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 011378 456 LINGHVSQNNLKEAFRFHDEM 476 (487)
Q Consensus 456 l~~~~~~~~~~~~a~~~~~~m 476 (487)
+.+.+.+.++++.|+.+--++
T Consensus 500 fFhhLLR~~rfekAFlLAvdi 520 (545)
T PF11768_consen 500 FFHHLLRYQRFEKAFLLAVDI 520 (545)
T ss_pred HHHHHHHhhHHHHHHHHHHhc
Confidence 445556666677766665443
No 389
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=39.43 E-value=3.4e+02 Score=25.77 Aligned_cols=126 Identities=12% Similarity=0.057 Sum_probs=63.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCc-CChhh-HHH
Q 011378 140 TLIGIFSRNGQLDRALMYFREMKSAG-----LVPDNVLYTIIINGYCRNGFVLEALKMRDEMLE--KGCV-MDVVT-YNT 210 (487)
Q Consensus 140 ~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~g~~-~~~~~-~~~ 210 (487)
++-+++.--+.++++++.|+.....- ......+|-.|=+.|.+..+.+++.-+..+..+ +.+. -|+.. |..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 34455555666777777777654311 111223677777777777777777655443322 1111 12221 222
Q ss_pred HH-----HHHHhcCCHHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 211 IL-----NGLCRAKMLTEADDLFNEML----ERGVFP-DFYTFTTLIHGHCKDGNMNKALNLFDI 265 (487)
Q Consensus 211 li-----~~~~~~~~~~~a~~~~~~m~----~~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~ 265 (487)
++ -++-..|.+-+|.+.-++.. ..|-.| -......+-+.|-..|+.+.|+.-|+.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 21 22334455555555544433 233222 223344555667777777777666653
No 390
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=39.42 E-value=3.9e+02 Score=28.12 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=29.5
Q ss_pred HHHHHHHHHH-HHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 362 SKADEFLSKM-VSEGVDPDSISYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 362 ~~a~~~~~~m-~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
++....+... .+.|+..+......++... .|++..+..++++...
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 4444444443 4567777777776666554 6888888888877654
No 391
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=39.26 E-value=2.8e+02 Score=26.14 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=19.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC
Q 011378 461 VSQNNLKEAFRFHDEMLQRGFVP 483 (487)
Q Consensus 461 ~~~~~~~~a~~~~~~m~~~g~~p 483 (487)
...|+...|..+++++...|.+|
T Consensus 219 il~g~~~~a~~~l~~L~~~ge~p 241 (334)
T COG1466 219 LLKGDVKKALRLLRDLLLEGEEP 241 (334)
T ss_pred HHCCCHHHHHHHHHHHHHcCCcH
Confidence 44788999999999998888877
No 392
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=39.10 E-value=2.1e+02 Score=26.64 Aligned_cols=116 Identities=12% Similarity=0.119 Sum_probs=61.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHH
Q 011378 218 AKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKL 297 (487)
Q Consensus 218 ~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 297 (487)
.--+.+|+++|++..+.+ ..+|+. -+.+...|...+| +.++....-+.+-..|.-+-.+.|+..+|.+.
T Consensus 229 a~Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~~~da------~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAG----ETIYRQ-SQQCQHQSPQHEA------QLRRDTNVLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred hhhHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhccchhh------hhhcccchhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 345667888888876643 122321 1112222222222 23332222222224455556778999999999
Q ss_pred HHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011378 298 WADMISRKIS-PNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPT 344 (487)
Q Consensus 298 ~~~m~~~~~~-p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 344 (487)
|+++.+..-- .-...-..||.+|.....+.++..++-..-+-..+.+
T Consensus 298 ~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkS 345 (556)
T KOG3807|consen 298 MRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKS 345 (556)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcch
Confidence 9998754311 1112335688888887777777666655444444333
No 393
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=39.06 E-value=78 Score=21.40 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011378 171 VLYTIIINGYCRNGFVLEALKMRDEMLEKG 200 (487)
Q Consensus 171 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 200 (487)
..++-+++..++..-++++...+.+..++|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333444444444444444444444444333
No 394
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=38.69 E-value=3.2e+02 Score=25.25 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=11.8
Q ss_pred ehHHHHHHHHccCCHHHHHHHHHHHHh
Q 011378 277 TYNTLIDGFCKVGEMEKANKLWADMIS 303 (487)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (487)
.-..++.+++...+.+...+++.....
T Consensus 203 ~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 203 EKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 334445555555454444444444444
No 395
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=38.33 E-value=3.3e+02 Score=25.20 Aligned_cols=72 Identities=11% Similarity=0.251 Sum_probs=42.0
Q ss_pred HhcCCHHHHHHHH-HHHHHCCCCCCe---eehHHHHHHHHccCCHH-HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011378 251 CKDGNMNKALNLF-DIMTQKSIKPDI---VTYNTLIDGFCKVGEME-KANKLWADMISRKISPNYISYGILINGYCSMGH 325 (487)
Q Consensus 251 ~~~g~~~~a~~~~-~~m~~~~~~~~~---~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 325 (487)
.+...+++..... +.|++.+++-.. ..|++++++---+..-+ -|.+.++ ...+|..|+.+++..|+
T Consensus 266 s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr---------hlK~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR---------HLKQYAPLLAAFCSQGQ 336 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH---------HHHhhhHHHHHHhcCCh
Confidence 3444456555544 466666665433 35888887754332211 1333333 34578999999999998
Q ss_pred HHHHHH
Q 011378 326 VTEAFR 331 (487)
Q Consensus 326 ~~~a~~ 331 (487)
.+-.+-
T Consensus 337 sEL~Ll 342 (412)
T KOG2297|consen 337 SELELL 342 (412)
T ss_pred HHHHHH
Confidence 775543
No 396
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=37.58 E-value=2.2e+02 Score=23.09 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=9.1
Q ss_pred hccCCHHHHHHHHHHHHh
Q 011378 391 VREENMDKAFALVSKMEN 408 (487)
Q Consensus 391 ~~~~~~~~a~~~~~~m~~ 408 (487)
+..|++++|..+|.+..+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 445555555555555444
No 397
>PRK09857 putative transposase; Provisional
Probab=37.36 E-value=2e+02 Score=26.45 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=12.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011378 456 LINGHVSQNNLKEAFRFHDEMLQRGFV 482 (487)
Q Consensus 456 l~~~~~~~~~~~~a~~~~~~m~~~g~~ 482 (487)
+..-+-+.|.-+.+.++..+|+..|+.
T Consensus 246 iAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 246 IAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333333444444444555555555543
No 398
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=37.32 E-value=1.1e+02 Score=23.09 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHhcC
Q 011378 429 GRMHDSELILWRMI--EKGLNPDRSTYTTLINGHVSQN 464 (487)
Q Consensus 429 g~~~~a~~~~~~m~--~~g~~p~~~ty~~l~~~~~~~~ 464 (487)
|.+++....+=+.. ..|..++...+...+++++++|
T Consensus 61 Ge~~~i~~alLkq~~~~~~~~~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 61 GEYGDIYLALLKQRCVADGPELDDESLAKALNLHVHRG 98 (105)
T ss_pred CchHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 66666654433333 5677788888888888888776
No 399
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=37.28 E-value=3.4e+02 Score=25.13 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 209 NTILNGLCRAKMLTEADDLFNEML 232 (487)
Q Consensus 209 ~~li~~~~~~~~~~~a~~~~~~m~ 232 (487)
|.++..+...+..+....+++.+.
T Consensus 202 n~vvq~~l~~~~~~~~~~i~~~l~ 225 (322)
T cd07920 202 NYVVQHVLELGDPDDTSRIIEKLL 225 (322)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345555555555554455554443
No 400
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=36.51 E-value=1.5e+02 Score=20.85 Aligned_cols=10 Identities=10% Similarity=0.126 Sum_probs=4.1
Q ss_pred HHHHHHhcCC
Q 011378 36 LINAYCREGF 45 (487)
Q Consensus 36 ll~~~~~~~~ 45 (487)
.+...+..|+
T Consensus 29 ~l~~A~~~~~ 38 (89)
T PF12796_consen 29 ALHYAAENGN 38 (89)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHcCC
Confidence 3333344444
No 401
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.01 E-value=67 Score=21.71 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=23.6
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011378 413 PDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQ 463 (487)
Q Consensus 413 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~ 463 (487)
|+...++-++..+++..-++++...+.+....|. -+..+|-.-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 3334445555555554455555555555555444 2444444444444443
No 402
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=35.82 E-value=69 Score=24.65 Aligned_cols=45 Identities=16% Similarity=0.031 Sum_probs=23.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011378 420 VILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQN 464 (487)
Q Consensus 420 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~ 464 (487)
.++..+.+.+..-.|..+++.|.+.|...+..|.-.-++.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444444445566666666666666666665555555555544
No 403
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=35.71 E-value=4.8e+02 Score=26.35 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=26.8
Q ss_pred HHHHHHHHH-HHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 011378 362 SKADEFLSK-MVSEGVDPDSISYNTLINGFVREENMDKAFALVSKME 407 (487)
Q Consensus 362 ~~a~~~~~~-m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 407 (487)
++....++. +.+.|+..+......+... ..|++..|...+++..
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai 234 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAA 234 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 344444443 3455776666655555543 3678888888887763
No 404
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.59 E-value=6.1e+02 Score=27.56 Aligned_cols=116 Identities=10% Similarity=0.126 Sum_probs=62.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCC---hhhHHHHHHHHHhcCCH--HHHHHHHHHHHHcC----CC--CC-
Q 011378 172 LYTIIINGYCRNGFVLEALKMRDEMLEKGCVMD---VVTYNTILNGLCRAKML--TEADDLFNEMLERG----VF--PD- 239 (487)
Q Consensus 172 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~----~~--~~- 239 (487)
-|..|+..|...|.-++|+++|.+..+.--..| ..-+-.++.-+.+.+.. +.+.+.-+...+.. +. .+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 577777777778888888877777655221011 11122344444444433 44444333333221 10 00
Q ss_pred -H---HHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHc
Q 011378 240 -F---YTFT-TLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCK 287 (487)
Q Consensus 240 -~---~t~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 287 (487)
. .+.+ .-+-.|......+.+..+++.+....-.++....+.++.-|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 0 0111 1233566677778888888887776666666777777777765
No 405
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=35.49 E-value=44 Score=24.02 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=29.9
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011378 413 PDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQ 463 (487)
Q Consensus 413 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~ 463 (487)
|......-++..+.. +++.+++..++++...|+.++ ...+.+.......
T Consensus 3 p~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~-~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 3 PPPEVIEEILESCLN-GDFKEARKKLYELLVEGYSAS-DILKQLHEVLVES 51 (89)
T ss_dssp --HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--HH-HHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHh
Confidence 444455566666654 489999999999988887554 3445555555554
No 406
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.79 E-value=6.3e+02 Score=27.47 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=31.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 011378 141 LIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRN 183 (487)
Q Consensus 141 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 183 (487)
.+-.|.+....+.+..+++++....-.++....+.++..|++.
T Consensus 597 ~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 597 DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 4455677778888888888887766666777778888877653
No 407
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=34.06 E-value=1.3e+02 Score=23.05 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=36.8
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------------------CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011378 412 VPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLN------------------PDRSTYTTLINGHVSQNNLKEAFRFH 473 (487)
Q Consensus 412 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~------------------p~~~ty~~l~~~~~~~~~~~~a~~~~ 473 (487)
.|...|-.-|...++-.. .-+..++++|.+.|+- +-...+...+..+.+.|+++.|++++
T Consensus 16 ~~~~vtl~elA~~l~cS~--Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~~g~~~~a~~ll 93 (115)
T PF12793_consen 16 QPVEVTLDELAELLFCSR--RNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLEQGKYEQALQLL 93 (115)
T ss_pred CCcceeHHHHHHHhCCCH--HHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344445555555443221 3456677777776641 22345666677778888888888887
Q ss_pred H
Q 011378 474 D 474 (487)
Q Consensus 474 ~ 474 (487)
+
T Consensus 94 ~ 94 (115)
T PF12793_consen 94 D 94 (115)
T ss_pred H
Confidence 6
No 408
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=33.61 E-value=1.7e+02 Score=22.41 Aligned_cols=90 Identities=16% Similarity=0.167 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHh-CCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHH
Q 011378 11 IDSAKMFLCEMEQ-KGVYP-DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVL 88 (487)
Q Consensus 11 ~~~a~~~~~~~~~-~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 88 (487)
.+++.+.+.++.+ -|+.| ++.+=-++-..+.....++. .+.-...|+..+-.||. |+++.....+
T Consensus 5 S~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~----~~~~~d~g~e~~~~t~~---------Ge~~~~~~~l 71 (113)
T PF08870_consen 5 SKKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSD----EDIKDDSGLELNWKTFT---------GEYDDIYEAL 71 (113)
T ss_pred CHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCC----CccCCCCCeEEeeeeec---------CchHHHHHHH
Confidence 3566677776644 36777 54443444444433322221 00011223333333332 6666555554
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccC
Q 011378 89 DEMLQMGLSPDTATYNTLLVESCRKE 114 (487)
Q Consensus 89 ~~m~~~g~~~~~~~~~~ll~~~~~~~ 114 (487)
-.+.- |...|...+...++++...|
T Consensus 72 l~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 72 LKQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred HHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 44443 55567777777777665554
No 409
>PHA02798 ankyrin-like protein; Provisional
Probab=33.60 E-value=2.5e+02 Score=28.07 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCCCCChhh---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 011378 329 AFRLWYEMVGKGIKPTLVS---CNTIIKGYCRSGDASKADEFLSKMVSEGVDPDS 380 (487)
Q Consensus 329 a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 380 (487)
..++.+-+.+.|..++... .+.|.-+ +..+.. .-.++++.+.+.|..++.
T Consensus 88 ~~~iv~~Ll~~GadiN~~d~~G~TpLh~a-~~~~~~-~~~~iv~~Ll~~Gadvn~ 140 (489)
T PHA02798 88 MLDIVKILIENGADINKKNSDGETPLYCL-LSNGYI-NNLEILLFMIENGADTTL 140 (489)
T ss_pred HHHHHHHHHHCCCCCCCCCCCcCcHHHHH-HHcCCc-ChHHHHHHHHHcCCCccc
Confidence 3556666666676655432 3333322 222221 223455555566666543
No 410
>PHA02989 ankyrin repeat protein; Provisional
Probab=33.16 E-value=5.1e+02 Score=25.92 Aligned_cols=264 Identities=14% Similarity=0.183 Sum_probs=117.9
Q ss_pred HHHHHHHhCCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccch--HHHHHHHHhcCCh--hhHHHHHHH
Q 011378 16 MFLCEMEQKGVYPDTVT-YNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTY--NSLINGLCKKGRC--DRAKEVLDE 90 (487)
Q Consensus 16 ~~~~~~~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~~~~--~~a~~~~~~ 90 (487)
++++.+.+.|..++... -.+.+..++..++. -.++.+.+.++|..+|...+ +.+ ..+++.+.. ....++.+.
T Consensus 17 ~~v~~LL~~GadvN~~~~g~t~l~~~~~~~~~--~~~iv~~Ll~~GAdvn~~~~~~tpL-~~a~~~~~~~~~~~~~iv~~ 93 (494)
T PHA02989 17 NALEFLLRTGFDVNEEYRGNSILLLYLKRKDV--KIKIVKLLIDNGADVNYKGYIETPL-CAVLRNREITSNKIKKIVKL 93 (494)
T ss_pred HHHHHHHHcCCCcccccCCCCHHHHHHhcCCC--ChHHHHHHHHcCCCccCCCCCCCcH-HHHHhccCcchhhHHHHHHH
Confidence 44555567787776541 12233333333221 12344455567766654321 223 233333332 334567777
Q ss_pred HHHCCCCCCHHH---HHHHHHHHH--ccCChhHHHHHHHHHHHCCCCC-CHh---HHHHHHHHHHh--CCCHHHHHHHHH
Q 011378 91 MLQMGLSPDTAT---YNTLLVESC--RKENMSEAEEIFCEMSRRGVAP-DIV---SFSTLIGIFSR--NGQLDRALMYFR 159 (487)
Q Consensus 91 m~~~g~~~~~~~---~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~~p-~~~---~~~~li~~~~~--~g~~~~a~~~~~ 159 (487)
+.+.|..++... .+.|..+.. ..++ .++.+.+.+.|..+ +.. -++.+ ..++. .++.+- .+
T Consensus 94 Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~----~eiv~~Ll~~Gadin~~~d~~g~tpL-h~a~~~~~~~~~i----v~ 164 (494)
T PHA02989 94 LLKFGADINLKTFNGVSPIVCFIYNSNINN----CDMLRFLLSKGINVNDVKNSRGYNLL-HMYLESFSVKKDV----IK 164 (494)
T ss_pred HHHCCCCCCCCCCCCCcHHHHHHHhcccCc----HHHHHHHHHCCCCcccccCCCCCCHH-HHHHHhccCCHHH----HH
Confidence 888887665432 334433321 2233 34566667788777 332 22333 33332 344443 34
Q ss_pred HHHHCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhh--HHHHHHHHHhcCCH--HHHHHHHHHHH
Q 011378 160 EMKSAGLVPDNV---LYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVT--YNTILNGLCRAKML--TEADDLFNEML 232 (487)
Q Consensus 160 ~m~~~g~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~~~~--~~a~~~~~~m~ 232 (487)
.+.+.|..|+.. .-.+-+..+++.+-...-.++.+.+.+.|..++... ..+++..+...+.. .....+++-+
T Consensus 165 ~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l- 243 (494)
T PHA02989 165 ILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFI- 243 (494)
T ss_pred HHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHH-
Confidence 444566655431 111222333333321223456666777887766543 23333333322210 0111222212
Q ss_pred HcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeee---hHHHHHHHHccCCHHHHHHHH
Q 011378 233 ERGVFPDF---YTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVT---YNTLIDGFCKVGEMEKANKLW 298 (487)
Q Consensus 233 ~~~~~~~~---~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~ 298 (487)
..|..++. .-++.|.. .+..|+.+ +++.+.+.|..++... .+.| ...++.|..+-+..++
T Consensus 244 ~~~advn~~d~~G~TpL~~-Aa~~~~~~----~v~~LL~~Gadin~~d~~G~TpL-~~A~~~~~~~iv~~LL 309 (494)
T PHA02989 244 LKYIKINKKDKKGFNPLLI-SAKVDNYE----AFNYLLKLGDDIYNVSKDGDTVL-TYAIKHGNIDMLNRIL 309 (494)
T ss_pred HhCCCCCCCCCCCCCHHHH-HHHhcCHH----HHHHHHHcCCCccccCCCCCCHH-HHHHHcCCHHHHHHHH
Confidence 22332221 22333333 33445543 4455566776665432 3344 4445567766555444
No 411
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=32.39 E-value=3.2e+02 Score=23.34 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=11.8
Q ss_pred HhcCCHHHHHHHHHHHH
Q 011378 461 VSQNNLKEAFRFHDEML 477 (487)
Q Consensus 461 ~~~~~~~~a~~~~~~m~ 477 (487)
.+.|+++.|.++++-|.
T Consensus 132 l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 132 LRKGSFEEAERFLKFME 148 (204)
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34677777777777775
No 412
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=31.87 E-value=51 Score=24.92 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=32.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC
Q 011378 421 ILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQRGFVPDD 485 (487)
Q Consensus 421 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 485 (487)
||..++++.-+.+=+++ ..+..+|......|.+-+... .--.-+..=..+.++|..+|++||+
T Consensus 8 Li~~LpRqqLLGQHREl-~ALrg~Gw~~~h~Tv~yVf~~-s~~~L~~yH~lv~~EM~~RGY~~~~ 70 (120)
T TIGR02328 8 LITKLPRQQLLGQHREC-CALRGNGWGKKHSTVDYVFCY-SPYKLFAYHLLVMEEMATRGYHVSK 70 (120)
T ss_pred HHhhccHHHHHHHHHHH-HHHHccccCCCcceehhhhhc-CHHHHHHHHHHHHHHHHHcCCCCCh
Confidence 34444444333333322 234456777666665544332 0001122234467888899998886
No 413
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=31.53 E-value=2e+02 Score=24.98 Aligned_cols=43 Identities=14% Similarity=0.293 Sum_probs=20.9
Q ss_pred HHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 011378 365 DEFLSKMVSEGVDP-DSISYNTLINGFVREENMDKAFALVSKME 407 (487)
Q Consensus 365 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 407 (487)
.++++-..+.|++- =++.|+++|+.-.-.-+.++..+++..++
T Consensus 192 ~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 192 EEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred HHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 33344444444431 23455666655444455666666655543
No 414
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.43 E-value=2e+02 Score=20.80 Aligned_cols=15 Identities=13% Similarity=0.209 Sum_probs=7.1
Q ss_pred CCCHHHHHHHHHHHH
Q 011378 148 NGQLDRALMYFREMK 162 (487)
Q Consensus 148 ~g~~~~a~~~~~~m~ 162 (487)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344444444444444
No 415
>PRK09462 fur ferric uptake regulator; Provisional
Probab=31.02 E-value=2.8e+02 Score=22.28 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 011378 151 LDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGF 185 (487)
Q Consensus 151 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 185 (487)
.-.|.++++.+++.+...+..|--.-|+.+...|-
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 34444444444444433343333333444444443
No 416
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=31.01 E-value=1.6e+02 Score=25.50 Aligned_cols=46 Identities=11% Similarity=0.227 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 432 HDSELILWRMIEKGLNP-DRSTYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 432 ~~a~~~~~~m~~~g~~p-~~~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
+-.+.+++-.++.|++- =+..|.++|+--.-.-+++++.+++..+.
T Consensus 189 ~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 189 DNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred HhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 33445555566666542 33467777766665666777777776653
No 417
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.98 E-value=4.2e+02 Score=24.30 Aligned_cols=144 Identities=21% Similarity=0.259 Sum_probs=81.9
Q ss_pred HHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCChhhHHHHHHHHhccCCHHHHH
Q 011378 330 FRLWYEMVGKG--------IKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS-EGVDPDSISYNTLINGFVREENMDKAF 400 (487)
Q Consensus 330 ~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~~~~~a~ 400 (487)
..++.-+...| ++-|...+|.|++-- ..++++..+-+++... .|-.-....+..+-..|+..++.+.+.
T Consensus 58 aplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkn--eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~ 135 (412)
T COG5187 58 APLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKN--EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGF 135 (412)
T ss_pred hHHHHHHHhccCCcccchheehhhHHHHHHHHhh--HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 33444455555 344444555555321 1223333333343332 233334567788889999999999999
Q ss_pred HHHHHHH----hCCCCCCHhhHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 011378 401 ALVSKME----NQGLVPDVITYNVILT-GFCRQGRMHDSELILWRMIEKGLNPDR----STYTTLINGHVSQNNLKEAFR 471 (487)
Q Consensus 401 ~~~~~m~----~~g~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p~~----~ty~~l~~~~~~~~~~~~a~~ 471 (487)
+...+.. ..|++-|+...-+-+. .|..+.-.++-.+..+.|.++|-.=++ .+|..+..+- ..++.+|-.
T Consensus 136 ~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~--~RnFkeAa~ 213 (412)
T COG5187 136 EWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMM--RRNFKEAAI 213 (412)
T ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHH--HHhhHHHHH
Confidence 8876543 3577777654333332 234444566667777888888765332 3666655443 356777777
Q ss_pred HHHHHH
Q 011378 472 FHDEML 477 (487)
Q Consensus 472 ~~~~m~ 477 (487)
++-+..
T Consensus 214 Ll~d~l 219 (412)
T COG5187 214 LLSDIL 219 (412)
T ss_pred HHHHHh
Confidence 766553
No 418
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.45 E-value=1.2e+02 Score=23.02 Aligned_cols=16 Identities=19% Similarity=0.102 Sum_probs=6.7
Q ss_pred ChhHHHHHHHHHhhCC
Q 011378 45 FLEEAFQLMNSMSGKG 60 (487)
Q Consensus 45 ~~~~a~~~~~~m~~~~ 60 (487)
..-.|.++++.+.+.+
T Consensus 15 ~~~sa~ei~~~l~~~~ 30 (116)
T cd07153 15 GHLTAEEIYERLRKKG 30 (116)
T ss_pred CCCCHHHHHHHHHhcC
Confidence 3334444444444433
No 419
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=30.44 E-value=54 Score=31.70 Aligned_cols=69 Identities=26% Similarity=0.346 Sum_probs=45.2
Q ss_pred HccCChhHHHHHHHHHH-------------HCCC-CCCHhHHHHHHHHHHhCCC---HHHHHHHHHHH-----HHCCCCC
Q 011378 111 CRKENMSEAEEIFCEMS-------------RRGV-APDIVSFSTLIGIFSRNGQ---LDRALMYFREM-----KSAGLVP 168 (487)
Q Consensus 111 ~~~~~~~~a~~~~~~m~-------------~~g~-~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m-----~~~g~~~ 168 (487)
+..+|++...++|++.. +.|+ .|...-...|-..|-+.|- +|+++.-|+.. ...|++|
T Consensus 182 ~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~P 261 (432)
T COG0001 182 LPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEP 261 (432)
T ss_pred ecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCc
Confidence 35688888888888763 2355 4555444455556666665 56766666654 2357899
Q ss_pred ChhhHHHHHHH
Q 011378 169 DNVLYTIIING 179 (487)
Q Consensus 169 ~~~~~~~ll~~ 179 (487)
|..|+..+|-+
T Consensus 262 DlttlGKiIGG 272 (432)
T COG0001 262 DLTTLGKIIGG 272 (432)
T ss_pred chhhhhhhhcC
Confidence 99998887764
No 420
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=30.33 E-value=4.5e+02 Score=24.45 Aligned_cols=80 Identities=8% Similarity=0.065 Sum_probs=51.6
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC--C----CC----------CCHhhHHHHHHHHHhcC
Q 011378 366 EFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQ--G----LV----------PDVITYNVILTGFCRQG 429 (487)
Q Consensus 366 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g----~~----------p~~~~~~~li~~~~~~g 429 (487)
.+-+.+.+.|+..+......|+... .+++..+..-++++.-. | +. ++...|. ++++... |
T Consensus 138 ~i~~~~~~~g~~i~~~a~~~L~~~~--g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~~~~if~-l~dai~~-~ 213 (326)
T PRK07452 138 LVERTAQELGVKLTPEAAELLAEAV--GNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNTTQNSLQ-LADALLQ-G 213 (326)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHh--CccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccCcCcHHH-HHHHHHC-C
Confidence 3445567789988888888888766 35777777777776542 1 11 1222344 5555544 6
Q ss_pred ChHHHHHHHHHHHHcCCCCC
Q 011378 430 RMHDSELILWRMIEKGLNPD 449 (487)
Q Consensus 430 ~~~~a~~~~~~m~~~g~~p~ 449 (487)
+...|..+++.+...|..|-
T Consensus 214 ~~~~A~~~l~~L~~~g~~p~ 233 (326)
T PRK07452 214 NTGKALALLDDLLDANEPAL 233 (326)
T ss_pred CHHHHHHHHHHHHHCCCcHH
Confidence 77888888888887776543
No 421
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=29.77 E-value=2e+02 Score=20.19 Aligned_cols=14 Identities=14% Similarity=0.093 Sum_probs=7.0
Q ss_pred HHHHHHHCCCCCCC
Q 011378 472 FHDEMLQRGFVPDD 485 (487)
Q Consensus 472 ~~~~m~~~g~~p~~ 485 (487)
+.+.+.+.|..||.
T Consensus 74 ~~~~Ll~~g~~~~~ 87 (89)
T PF12796_consen 74 IVKLLLEHGADVNI 87 (89)
T ss_dssp HHHHHHHTTT-TTS
T ss_pred HHHHHHHcCCCCCC
Confidence 44555556666653
No 422
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=29.61 E-value=6e+02 Score=25.62 Aligned_cols=134 Identities=16% Similarity=0.255 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHhC-----CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHH
Q 011378 325 HVTEAFRLWYEMVGK-----GIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKA 399 (487)
Q Consensus 325 ~~~~a~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 399 (487)
++-++.+++..+... ..-.++..||++|++. .+....++..|.+.|+-.|. .|++|+.-.-+..+....
T Consensus 595 nI~~a~~my~~i~e~~RlyssCfKN~iIYNaVISgI-----heqmK~lmkl~PR~~iL~Di-HF~aLL~K~kKp~K~~~t 668 (782)
T PF07218_consen 595 NIYEALQMYSYIAEYIRLYSSCFKNMIIYNAVISGI-----HEQMKNLMKLMPRKPILKDI-HFEALLNKEKKPQKITRT 668 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH-----HHHHHHHHHhCCCcchhHHH-HHHHHhhhcccccccccc
Confidence 455555555544321 2335677788888654 56677788888888876554 477777666542211111
Q ss_pred HHHHHHHHhCCCCCCHhh----------HHHHHHHHHhcCChHHHHHHHHHHHH-------cCC------CCCHHHHHHH
Q 011378 400 FALVSKMENQGLVPDVIT----------YNVILTGFCRQGRMHDSELILWRMIE-------KGL------NPDRSTYTTL 456 (487)
Q Consensus 400 ~~~~~~m~~~g~~p~~~~----------~~~li~~~~~~g~~~~a~~~~~~m~~-------~g~------~p~~~ty~~l 456 (487)
-.+. +.|++.+ --.+|.+|....+ .+...+..+|+- .++ -|+-..+..|
T Consensus 669 d~v~-------YdPTVKsyAL~~LeR~PmvsvInsfFEaKK-K~Ls~i~aqmKLDlfSL~nedlKiP~d~~~nsKL~~kL 740 (782)
T PF07218_consen 669 DYVL-------YDPTVKSYALTELEREPMVSVINSFFEAKK-KDLSDIMAQMKLDLFSLTNEDLKIPNDKGANSKLTAKL 740 (782)
T ss_pred ccee-------cCchHHHHHhhhhccchHHHHHHHHHHHHH-HHHHHHHHHHhhhHHhhccccccCCCCCCcchHHHHHH
Confidence 1111 2343333 3467777766544 344455666641 122 2566677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 011378 457 INGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 457 ~~~~~~~~~~~~a~~~~~~m~ 477 (487)
++-|- .+-..+|++|.
T Consensus 741 iskYK-----~EIK~~FkEMr 756 (782)
T PF07218_consen 741 ISKYK-----KEIKKLFKEMR 756 (782)
T ss_pred HHHHH-----HHHHHHHHHHH
Confidence 77775 34566777775
No 423
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=29.52 E-value=33 Score=22.22 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=26.2
Q ss_pred cCChhHHHHHHHHHhhCCCCCCccchHHHHHHHH
Q 011378 43 EGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLC 76 (487)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 76 (487)
.|-.++...+|.+|.++..-|.+..|+-.|+-|.
T Consensus 5 igy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 5 IGYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYS 38 (55)
T ss_pred ccCCHHHHHHHHcCcccccCccceeeeeeHHHHH
Confidence 3566788888999988888888888887666553
No 424
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=28.39 E-value=4.1e+02 Score=23.34 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=49.2
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---Chhh--HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 011378 340 GIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDP---DSIS--YNTLINGFVREENMDKAFALVSKMENQGLVPD 414 (487)
Q Consensus 340 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 414 (487)
.+.+...-+|.|+--|.-...+.+|.+.|. ...|+.| |..+ -..-|......|++++|.+.+..+.-.=+.-|
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 345555566666666655555555555444 2445554 2222 23445566777777777777666532222223
Q ss_pred Hhh-HHHH---HHHHHhcCChHHHHHHHHH
Q 011378 415 VIT-YNVI---LTGFCRQGRMHDSELILWR 440 (487)
Q Consensus 415 ~~~-~~~l---i~~~~~~g~~~~a~~~~~~ 440 (487)
... |... +--..++|..++|.+..+.
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 211 1111 1122455666666655554
No 425
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=28.35 E-value=3.2e+02 Score=22.15 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=6.4
Q ss_pred HHHHHHHHHHcCC
Q 011378 224 ADDLFNEMLERGV 236 (487)
Q Consensus 224 a~~~~~~m~~~~~ 236 (487)
-..+-.++..+|+
T Consensus 78 ~~~I~~~L~~kGi 90 (157)
T PRK00117 78 PRRIRQELRQKGV 90 (157)
T ss_pred HHHHHHHHHHcCC
Confidence 3344455555554
No 426
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=28.29 E-value=3.7e+02 Score=25.13 Aligned_cols=47 Identities=15% Similarity=0.318 Sum_probs=21.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCChHHHHHHHHH
Q 011378 322 SMGHVTEAFRLWYEMVGKGIKPTLV---SCNTIIKGYCRSGDASKADEFLSK 370 (487)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~ 370 (487)
+.|+..+|.+.++++.+. .|-.. .-..||.++....-+.....++.+
T Consensus 287 klGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666655432 12222 222355555544444444444433
No 427
>PRK14136 recX recombination regulator RecX; Provisional
Probab=28.18 E-value=4.9e+02 Score=24.11 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=15.7
Q ss_pred CCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 011378 133 PDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVP 168 (487)
Q Consensus 133 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 168 (487)
|....++..+..+++...-.. ++.++|.+.|+.+
T Consensus 160 ~~~~lk~kAL~lLSrReRSe~--ELr~KL~kkG~~e 193 (309)
T PRK14136 160 PARSLKGRALGYLSRREYSRA--ELARKLAPYADES 193 (309)
T ss_pred cHHHHHHHHHHHhhcccccHH--HHHHHHHHcCCCH
Confidence 444455555555554433222 3444455444433
No 428
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=28.14 E-value=5.1e+02 Score=24.37 Aligned_cols=79 Identities=13% Similarity=0.215 Sum_probs=57.1
Q ss_pred ehHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCChh
Q 011378 277 TYNTLIDGFCKVGEMEKANKLWADMISR---KISPNYISY--GILINGYCSMGHVTEAFRLWYEMVG-----KGIKPTLV 346 (487)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~t~--~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~ 346 (487)
....++...-+.++.++|.+.++++... --.|+.+.| ......+...|+..++.++.++..+ -+++|+++
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3456666777788999999999998753 335666665 4456667788999999999998877 68888775
Q ss_pred h-HHHHHHHH
Q 011378 347 S-CNTIIKGY 355 (487)
Q Consensus 347 ~-~~~li~~~ 355 (487)
+ |..+=+-|
T Consensus 157 ~~fY~lssqY 166 (380)
T KOG2908|consen 157 SSFYSLSSQY 166 (380)
T ss_pred hhHHHHHHHH
Confidence 4 54444434
No 429
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=27.93 E-value=6e+02 Score=25.10 Aligned_cols=164 Identities=15% Similarity=0.246 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCC------C---CCChhhHHHHHHHHH-----
Q 011378 256 MNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRK------I---SPNYISYGILINGYC----- 321 (487)
Q Consensus 256 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~---~p~~~t~~~li~~~~----- 321 (487)
+++-.+.++.+.+.| .+| ....-|++|.+.+++++|...+++-.+.| . ...+.++.-++.+.-
T Consensus 70 ~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQv 146 (480)
T TIGR01503 70 LDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQI 146 (480)
T ss_pred HHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeec
Confidence 455555555555443 112 22334566666666666666666544321 1 122333444444331
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 011378 322 SMGHVTEAFRLWYEMVGKGIKPT---LVSCNTIIKGYCRSG-------DASKADEFLSKMVSEGVDPDSISYNTLINGFV 391 (487)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 391 (487)
+.| -.++..+++-+...|+... ..+||.- |++.- +++.+.++.-...+.|+..|..+|..|...++
T Consensus 147 RHG-tpDarlL~e~~~a~G~~a~EGG~ISYnlP---YsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtLv 222 (480)
T TIGR01503 147 RHG-TPDARLLAEIILAGGFTSFEGGGISYNIP---YAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTLV 222 (480)
T ss_pred cCC-CCcHHHHHHHHHHcCCCccCCCcceeccc---cCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCcc
Confidence 112 1245555555555554322 2333321 22211 23333444444445677767666665443322
Q ss_pred ccCCHHHHHHHHHHHH--hCCCCCCHhhHHHHHHHHHhcCChHHH
Q 011378 392 REENMDKAFALVSKME--NQGLVPDVITYNVILTGFCRQGRMHDS 434 (487)
Q Consensus 392 ~~~~~~~a~~~~~~m~--~~g~~p~~~~~~~li~~~~~~g~~~~a 434 (487)
- =-+.-|..+++-+- +.|++.=+ -+|+++|++..-
T Consensus 223 P-Psisiav~ilE~Lla~eqGVksis-------vgy~Q~Gn~~QD 259 (480)
T TIGR01503 223 P-PSISNAIGIIEGLLAAEQGVKNIT-------VGYGQVGNLTQD 259 (480)
T ss_pred C-hHHHHHHHHHHHHHHHHcCCeEEE-------eccccCCChHHH
Confidence 1 12344555565553 45655221 246666666544
No 430
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=27.91 E-value=8.1e+02 Score=26.62 Aligned_cols=97 Identities=15% Similarity=0.220 Sum_probs=49.8
Q ss_pred HHHHHHHHH-HhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 011378 328 EAFRLWYEM-VGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKM 406 (487)
Q Consensus 328 ~a~~~~~~m-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 406 (487)
+..+.+.++ .+.|+..+...+..+++.. .|+...+...++++.. +......++......+.
T Consensus 183 ~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia-~~~~~~IT~e~V~allg--------------- 244 (824)
T PRK07764 183 VMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLA-GAGPEGVTYERAVALLG--------------- 244 (824)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh-hcCCCCCCHHHHHHHhc---------------
Confidence 333333333 3456666666665555444 3667677666666542 11122222222222111
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011378 407 ENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP 448 (487)
Q Consensus 407 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 448 (487)
..+.....-++++.. .|+...+..++.++.+.|..|
T Consensus 245 -----~~~~~~I~~lidAL~-~~D~a~al~~l~~Li~~G~dp 280 (824)
T PRK07764 245 -----VTDSALIDEAVDALA-AGDGAALFGTVDRVIEAGHDP 280 (824)
T ss_pred -----CCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 112223334455554 467888888889988888753
No 431
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=27.58 E-value=93 Score=15.65 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 011378 209 NTILNGLCRAKMLTEADDLFNEM 231 (487)
Q Consensus 209 ~~li~~~~~~~~~~~a~~~~~~m 231 (487)
..+-..+...++++.|...|...
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33344444445555555555443
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.45 E-value=1.8e+02 Score=25.96 Aligned_cols=58 Identities=12% Similarity=0.122 Sum_probs=38.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH----HcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 420 VILTGFCRQGRMHDSELILWRMI----EKGL-NPDRSTYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 420 ~li~~~~~~g~~~~a~~~~~~m~----~~g~-~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
-+...|.+.|++++|.++|+.+. ..|+ .+...+...+..++...|+.++.+.+.=+|.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34456677777777777777764 2232 3445566677788888888888888766654
No 433
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=26.90 E-value=3.8e+02 Score=22.45 Aligned_cols=99 Identities=21% Similarity=0.313 Sum_probs=56.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH-H
Q 011378 84 AKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREM-K 162 (487)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m-~ 162 (487)
..+|+..+.+.|..-|..--.+.+..-.+.| ..-..+..++.+.|+.+++ -..++..+......+.|..++..- +
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi~~~~--Ie~aL~~~~~~~~~~~a~~~~~kk~~ 129 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGIDDEI--IEEALELIDEEDEQERARKVLRKKFK 129 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCCCHHH--HHHHHhccchHHHHHHHHHHHHHHhC
Confidence 4455555566665555555555566555655 4556677788888864443 455666566666666666655543 3
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCH
Q 011378 163 SAGLVPDNVLYTIIINGYCRNGFV 186 (487)
Q Consensus 163 ~~g~~~~~~~~~~ll~~~~~~~~~ 186 (487)
..+..|+......+...+.+.|+.
T Consensus 130 ~~~~~~~~~~k~Ki~r~L~~rGFs 153 (174)
T COG2137 130 RENKPPDKKEKAKIQRFLLRRGFS 153 (174)
T ss_pred ccccCcchhHHHHHHHHHHHcCCC
Confidence 333455555555555555555543
No 434
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=26.69 E-value=1.6e+02 Score=22.50 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=22.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCC
Q 011378 35 TLINAYCREGFLEEAFQLMNSMSGKGL 61 (487)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~~~ 61 (487)
+++.-+-++...++|+++.+.|..+|-
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 457777888999999999999998873
No 435
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=26.43 E-value=2.7e+02 Score=20.56 Aligned_cols=48 Identities=17% Similarity=0.190 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011378 396 MDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKG 445 (487)
Q Consensus 396 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 445 (487)
.++..+++..+.... ....|++.|+.++...|.-..|+.+-..+...|
T Consensus 47 ~eq~~qmL~~W~~~~--G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNKT--GRKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 566666666665532 224567777777777777777766655555544
No 436
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.41 E-value=1.2e+02 Score=21.44 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC
Q 011378 350 TIIKGYCRSGDASKADEFLSKMVSEG 375 (487)
Q Consensus 350 ~li~~~~~~~~~~~a~~~~~~m~~~g 375 (487)
++++.+.++.-.++|.++++.|.+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 35667788899999999999999887
No 437
>COG5210 GTPase-activating protein [General function prediction only]
Probab=26.20 E-value=6.8e+02 Score=25.16 Aligned_cols=131 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhc-CChhhHHHHHHHHHHC
Q 011378 16 MFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKK-GRCDRAKEVLDEMLQM 94 (487)
Q Consensus 16 ~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~ 94 (487)
++++.+.+.|+.+...++.-++..+.+.-.++.+.++|+-+-..|...-...+.+++...... ...+.-..+.....+.
T Consensus 363 ~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 442 (496)
T COG5210 363 ELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDELLDLLLKQL 442 (496)
T ss_pred HHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhccCchhHHHHHHHhh
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCC
Q 011378 95 GLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQ 150 (487)
Q Consensus 95 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 150 (487)
-..+....+ .-......+...+...+...+.+.++.|+. +.+.+.--.+.+.
T Consensus 443 ~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~i~p~~--~~~~~~~~~~~~~ 494 (496)
T COG5210 443 FLHSGKEAW--SSILKFRHGTDRDILLFIEDLLKKDITPTR--YRSELREIQRKRN 494 (496)
T ss_pred hhhhhhhhh--hhhHHhhhhhhhhHHHHHHhhhhcccCchh--hhHHHHHHhhhhc
No 438
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.43 E-value=4.4e+02 Score=22.65 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=66.1
Q ss_pred HHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHH---H--HHHHHccCChhHHHHHH
Q 011378 49 AFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNT---L--LVESCRKENMSEAEEIF 123 (487)
Q Consensus 49 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~---l--l~~~~~~~~~~~a~~~~ 123 (487)
.++.|+.-.......-+..|..++.... .+.+ ......+.+... +...+|.. | -..+...+++++|+.-+
T Consensus 38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~---n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL 112 (207)
T COG2976 38 GWRYWQSHQVEQAQEASAQYQNAIKAVQ-AKKP-KSIAAAEKFVQA---NGKTIYAVLAALELAKAEVEANNLDKAEAQL 112 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc-hhHHHHHHHHhh---ccccHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3444544333222233455666666653 2233 344444444432 22233332 2 23456677777777777
Q ss_pred HHHHHCCCCCCHhHHHHHH-----HHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 124 CEMSRRGVAPDIVSFSTLI-----GIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLE 198 (487)
Q Consensus 124 ~~m~~~g~~p~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 198 (487)
+.-... |....+.+++ +.....|.+|.|+..++..+..+..+ ...-.-=+.+...|+-.+|..-+..-..
T Consensus 113 ~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 113 KQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence 655432 2223333333 45566677777777766544322111 0011112344555555566555555544
Q ss_pred c
Q 011378 199 K 199 (487)
Q Consensus 199 ~ 199 (487)
.
T Consensus 188 ~ 188 (207)
T COG2976 188 S 188 (207)
T ss_pred c
Confidence 4
No 439
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=25.37 E-value=5.4e+02 Score=23.73 Aligned_cols=42 Identities=29% Similarity=0.282 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHH
Q 011378 256 MNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWA 299 (487)
Q Consensus 256 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (487)
..+|+++|..+.++.-+ ..+-+.+|.++....+..+|...+.
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHH
Confidence 46777888777654322 2234456666666666666666554
No 440
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=25.32 E-value=22 Score=22.60 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=16.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCCCC
Q 011378 463 QNNLKEAFRFHDEMLQRGFVPDDAF 487 (487)
Q Consensus 463 ~~~~~~a~~~~~~m~~~g~~p~~~~ 487 (487)
.=+++.|...|.++...|--|.++|
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~eAF 50 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPEAF 50 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CCCC
T ss_pred CCCHHHHHHHHHHHHHcCCCChHhc
Confidence 3457888888888887777776665
No 441
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=25.20 E-value=2.7e+02 Score=20.19 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=8.1
Q ss_pred hcCCHHHHHHHHHHHH
Q 011378 217 RAKMLTEADDLFNEML 232 (487)
Q Consensus 217 ~~~~~~~a~~~~~~m~ 232 (487)
+.|+.+.|.+++..+.
T Consensus 48 ~~g~~~~ar~LL~~L~ 63 (88)
T cd08819 48 NHGNESGARELLKRIV 63 (88)
T ss_pred ccCcHHHHHHHHHHhc
Confidence 3455555555555544
No 442
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=24.83 E-value=3.2e+02 Score=20.83 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 151 LDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNE 230 (487)
Q Consensus 151 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 230 (487)
.++|..+.+++.+.+- -...+--+-+..+.+.|++++|+. .-.....||...|-+|-. .+.|..+.+..-+.+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl----~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALL----LPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHH----HHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHH----hcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 4455555555554432 112222233334455555555511 011122344444433322 345555555555554
Q ss_pred HHHc
Q 011378 231 MLER 234 (487)
Q Consensus 231 m~~~ 234 (487)
+..+
T Consensus 95 la~~ 98 (116)
T PF09477_consen 95 LASS 98 (116)
T ss_dssp HCT-
T ss_pred HHhC
Confidence 4433
No 443
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=24.72 E-value=3.5e+02 Score=21.25 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 221 LTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMT 267 (487)
Q Consensus 221 ~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 267 (487)
......+++.+.+.++.-....+.-+=..|.+-.+..+|-.+|+.++
T Consensus 79 VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 79 VRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred hhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 33444555666666655444455555555666667777777776553
No 444
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=24.64 E-value=1.9e+02 Score=22.13 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=6.0
Q ss_pred hhhHHHHHHHHHHCC
Q 011378 81 CDRAKEVLDEMLQMG 95 (487)
Q Consensus 81 ~~~a~~~~~~m~~~g 95 (487)
+-.|.++++.+.+.+
T Consensus 23 ~~ta~ei~~~l~~~~ 37 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKG 37 (120)
T ss_dssp SEEHHHHHHHHHHTT
T ss_pred CCCHHHHHHHhhhcc
Confidence 333444444444333
No 445
>COG0819 TenA Putative transcription activator [Transcription]
Probab=24.42 E-value=4.8e+02 Score=22.80 Aligned_cols=30 Identities=10% Similarity=0.179 Sum_probs=19.9
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhCCCHHHH
Q 011378 125 EMSRRGVAPDIVSFSTLIGIFSRNGQLDRA 154 (487)
Q Consensus 125 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 154 (487)
.+.+....|....|+.-|...+..|++...
T Consensus 99 ~~~~~~~~~~~~aYt~ym~~~~~~g~~~~~ 128 (218)
T COG0819 99 ELLKTEPSPANKAYTRYLLDTAYSGSFAEL 128 (218)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhcCCHHHH
Confidence 344445556777788888877887776543
No 446
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.28 E-value=5.7e+02 Score=23.57 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 011378 291 MEKANKLWADMISRKI----SPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADE 366 (487)
Q Consensus 291 ~~~a~~~~~~m~~~~~----~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 366 (487)
.+.|.+.|......+. ..+...-..++....+.|..+....+++..... ++..--..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5667777777666422 233444455666666777766555555555432 355666778888888888888888
Q ss_pred HHHHHHHCC-CCCChhhHHHHHHHHhccC--CHHHHHHHHH
Q 011378 367 FLSKMVSEG-VDPDSISYNTLINGFVREE--NMDKAFALVS 404 (487)
Q Consensus 367 ~~~~m~~~g-~~p~~~~~~~li~~~~~~~--~~~~a~~~~~ 404 (487)
+++.....+ +.+.. .+. ++.++...+ ..+.+++.+.
T Consensus 223 ~l~~~l~~~~v~~~d-~~~-~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-IRY-VLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTT-HHH-HHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-HHH-HHHHHhcCChhhHHHHHHHHH
Confidence 888777654 44333 333 333333222 2466666653
No 447
>PF08564 CDC37_C: Cdc37 C terminal domain; InterPro: IPR013873 Cdc37 is a protein required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the C-terminal domain whose function is unclear. It is found C-terminal to the Hsp90 chaperone (heat shock protein 90) binding domain IPR013874 from INTERPRO and the N-terminal kinase binding domain of Cdc37 IPR013855 from INTERPRO []. ; PDB: 1US7_B.
Probab=24.15 E-value=91 Score=23.19 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=4.2
Q ss_pred HHHHHhcCChhhHHHHHHHHH
Q 011378 72 INGLCKKGRCDRAKEVLDEML 92 (487)
Q Consensus 72 i~~~~~~~~~~~a~~~~~~m~ 92 (487)
+..+.+.++++...++|..|.
T Consensus 28 mq~Alet~~ld~vnkVl~~M~ 48 (99)
T PF08564_consen 28 MQKALETGDLDEVNKVLGKMP 48 (99)
T ss_dssp ------------HHHHHT--S
T ss_pred HHHHHHcCCHHHHHHHHHhCC
Confidence 344455666666666666654
No 448
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.03 E-value=8.9e+02 Score=25.76 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=13.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 011378 141 LIGIFSRNGQLDRALMYFREMK 162 (487)
Q Consensus 141 li~~~~~~g~~~~a~~~~~~m~ 162 (487)
|+..|...+++..|.+++-..+
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 5556666666666666555544
No 449
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.70 E-value=5.8e+02 Score=23.47 Aligned_cols=146 Identities=14% Similarity=0.110 Sum_probs=79.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHH
Q 011378 167 VPDNVLYTIIINGYCRNGFVLEALKMRDEMLE-KGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLE----RGVFPDFY 241 (487)
Q Consensus 167 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~ 241 (487)
+.|...+|.|++. +...+++--+-.++.++ +|-.--...|..+..-|++.++.+.+.+...+..+ .|.+.|..
T Consensus 78 kfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~ 155 (412)
T COG5187 78 KFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVF 155 (412)
T ss_pred ehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhH
Confidence 3455555655542 12223333222333332 23333455677788888998888887776665543 46666654
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCe----eehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011378 242 TFTT-LIHGHCKDGNMNKALNLFDIMTQKSIKPDI----VTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGIL 316 (487)
Q Consensus 242 t~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l 316 (487)
...+ |--.|....-+++.+++.+.|.++|-..+. -+|..+...-. .++.+|-.++.+.....-.....+|...
T Consensus 156 l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~--RnFkeAa~Ll~d~l~tF~S~El~sY~~~ 233 (412)
T COG5187 156 LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMR--RNFKEAAILLSDILPTFESSELISYSRA 233 (412)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHH--HhhHHHHHHHHHHhccccccccccHHHH
Confidence 3322 222334444467777778888887765443 24444433322 3577888888877655433344444433
No 450
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=23.60 E-value=5.8e+02 Score=23.43 Aligned_cols=136 Identities=16% Similarity=0.152 Sum_probs=71.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCccchH-------HHHHHHHhcCChhhHHHHHHHHH----HCCCCCCHHHHH
Q 011378 36 LINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYN-------SLINGLCKKGRCDRAKEVLDEML----QMGLSPDTATYN 104 (487)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------~li~~~~~~~~~~~a~~~~~~m~----~~g~~~~~~~~~ 104 (487)
+.+...+..++++|...+..+..+|+..+..+.| .+-+.|.+.|++..-.+...... +..-+..+....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 4455567777788888887777777766654433 44556666776665555443322 211122333444
Q ss_pred HHHHHHHcc-CChhHHHHHHHHHHHCCCCCCHh-----HHHHHHHHHHhCCCHHHHHHHH----HHHHHCCCCCChh
Q 011378 105 TLLVESCRK-ENMSEAEEIFCEMSRRGVAPDIV-----SFSTLIGIFSRNGQLDRALMYF----REMKSAGLVPDNV 171 (487)
Q Consensus 105 ~ll~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~-----~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~~~~~ 171 (487)
+|+..+-.. .+++....+.....++..+-... .=.-++..+.+.|.+.+|+.+. .++++..-+|+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 455444322 34555555555544332221111 1124666777777777776443 3444444445443
No 451
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=23.40 E-value=6.2e+02 Score=23.74 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011378 452 TYTTLINGHVSQNNLKEAFRFHDEMLQRGFVP 483 (487)
Q Consensus 452 ty~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 483 (487)
+.-.++++.. .|+...|..+++.+...|..|
T Consensus 214 ~if~l~dai~-~~~~~~a~~~l~~ll~~g~~p 244 (343)
T PRK06585 214 SLDDAADAAL-AGDLAAFERALDRALAEGTAP 244 (343)
T ss_pred cHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCH
Confidence 3344566644 688889999999999888877
No 452
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=23.38 E-value=1.8e+02 Score=23.13 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=25.0
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 011378 109 ESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGI 144 (487)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 144 (487)
.+-+.|-..++..++++|.+.|+..+...|+.++.-
T Consensus 118 ~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 118 LAKSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred HHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 344566777777788888888877777777766543
No 453
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.04 E-value=7.7e+02 Score=24.69 Aligned_cols=90 Identities=10% Similarity=0.067 Sum_probs=51.5
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhh
Q 011378 338 GKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVIT 417 (487)
Q Consensus 338 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 417 (487)
..|+..+......+.... .|+...|..+++.....+ ....++... .+++ |+ ++...
T Consensus 195 ~Egi~~e~eAL~~Ia~~S--~Gd~RdAL~lLeq~i~~~--~~~it~~~V-------------~~~l------g~-~~~~~ 250 (484)
T PRK14956 195 IENVQYDQEGLFWIAKKG--DGSVRDMLSFMEQAIVFT--DSKLTGVKI-------------RKMI------GY-HGIEF 250 (484)
T ss_pred HcCCCCCHHHHHHHHHHc--CChHHHHHHHHHHHHHhC--CCCcCHHHH-------------HHHh------CC-CCHHH
Confidence 456666666655554333 477777777777654321 111122111 1111 32 35555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011378 418 YNVILTGFCRQGRMHDSELILWRMIEKGLNPDRS 451 (487)
Q Consensus 418 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 451 (487)
+..++.+....+....+..++.+|.+.|..|...
T Consensus 251 ~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 251 LTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 6666666666655667888888888888877644
No 454
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=22.99 E-value=6e+02 Score=23.44 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCChhh
Q 011378 312 SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMV-----SEGVDPDSIS 382 (487)
Q Consensus 312 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~g~~p~~~~ 382 (487)
+++..-..|..+|.+.+|.++.+...... +.+...+-.|+..+...||--.+..-++.+. +-|+..|...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 34555566777777777777666554332 3344556667777777777555555554443 2355555443
No 455
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.93 E-value=9.7e+02 Score=25.80 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHH-HCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 011378 361 ASKADEFLSKMV-SEGVDPDSISYNTLINGFVREENMDKAFALVSKME 407 (487)
Q Consensus 361 ~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 407 (487)
.++..+.++... ..|+..+......+... ..|++.+|+.+++...
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAi 225 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 344445555543 45766666555555443 3788888888876643
No 456
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.78 E-value=8e+02 Score=24.80 Aligned_cols=36 Identities=8% Similarity=-0.001 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 011378 99 DTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDI 135 (487)
Q Consensus 99 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 135 (487)
+....-.++.+... ++.+.+..++++|.+.|..|..
T Consensus 245 ~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 245 EPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 33344445554433 6777788888888887776643
No 457
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.46 E-value=3e+02 Score=21.03 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=17.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCC
Q 011378 71 LINGLCKKGRCDRAKEVLDEMLQMG 95 (487)
Q Consensus 71 li~~~~~~~~~~~a~~~~~~m~~~g 95 (487)
+|+.+.++...++|+++++.|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4566666777777777777777666
No 458
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=22.43 E-value=2.1e+02 Score=19.79 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=12.4
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHH
Q 011378 78 KGRCDRAKEVLDEMLQMGLSPDTATYN 104 (487)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~~~~~~ 104 (487)
.++.+.+.+++++....|..|.....+
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~ 40 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEE 40 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 444555555555555444444444333
No 459
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=22.40 E-value=6.2e+02 Score=24.52 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=12.4
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011378 443 EKGLNPDRSTYTTLINGHVSQNNLKEAF 470 (487)
Q Consensus 443 ~~g~~p~~~ty~~l~~~~~~~~~~~~a~ 470 (487)
..|.-.|...+...++.+...-.+++|+
T Consensus 179 ~~G~l~D~~~l~~~lr~~lgd~TFeEAy 206 (391)
T cd07229 179 REGYFLDVKVLEEFVRANLGDLTFEEAY 206 (391)
T ss_pred cCCCcccHHHHHHHHHHHcCCCcHHHHH
Confidence 3444444444444444444333344443
No 460
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=22.40 E-value=6.4e+02 Score=23.51 Aligned_cols=24 Identities=8% Similarity=0.162 Sum_probs=17.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC
Q 011378 426 CRQGRMHDSELILWRMIEKGLNPD 449 (487)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~g~~p~ 449 (487)
+..|++....+..+++.+.|+.|-
T Consensus 266 a~S~d~~~~v~~~Rei~~sg~~~~ 289 (346)
T KOG0989|consen 266 ALSADTPNTVKRVREIMRSGYSPL 289 (346)
T ss_pred HHccChHHHHHHHHHHHHhccCHH
Confidence 566778888888888877777664
No 461
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=22.08 E-value=4.7e+02 Score=21.89 Aligned_cols=104 Identities=15% Similarity=0.203 Sum_probs=54.4
Q ss_pred HHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-CCC
Q 011378 54 NSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRR-GVA 132 (487)
Q Consensus 54 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~ 132 (487)
..+.+.|+.-|..--.+.+..-.+.| ..-..+..++.+.|+ +..+-...+.........+.|.+++..-... +..
T Consensus 59 ~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~~~~~ 134 (174)
T COG2137 59 DRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFKRENKP 134 (174)
T ss_pred HHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhCccccC
Confidence 33333333333332333444444444 345567777888884 4445555666566666666676666554333 345
Q ss_pred CCHhHHHHHHHHHHhCCC-HHHHHHHHHHH
Q 011378 133 PDIVSFSTLIGIFSRNGQ-LDRALMYFREM 161 (487)
Q Consensus 133 p~~~~~~~li~~~~~~g~-~~~a~~~~~~m 161 (487)
|+..-...+...+.+.|- .+.+..++..+
T Consensus 135 ~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 135 PDKKEKAKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred cchhHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 554444555555555554 44444454444
No 462
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=21.82 E-value=2.6e+02 Score=19.91 Aligned_cols=39 Identities=18% Similarity=0.071 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 011378 396 MDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSEL 436 (487)
Q Consensus 396 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 436 (487)
.+++.+++....+.. ....|...|+.++.+.|+-+-+.+
T Consensus 44 ~eq~~~mL~~W~~r~--g~~at~~~L~~AL~~i~r~Di~~~ 82 (84)
T cd08317 44 AQQAQAMLKLWLERE--GKKATGNSLEKALKKIGRDDIVEK 82 (84)
T ss_pred HHHHHHHHHHHHHhc--CCcchHHHHHHHHHHcChHHHHHH
Confidence 466667776666542 234667777777777777666543
No 463
>PRK13342 recombination factor protein RarA; Reviewed
Probab=21.79 E-value=7.5e+02 Score=24.08 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHH---CCC-CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 011378 116 MSEAEEIFCEMSR---RGV-APDIVSFSTLIGIFSRNGQLDRALMYFREMKS 163 (487)
Q Consensus 116 ~~~a~~~~~~m~~---~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 163 (487)
.++...++..... .|+ ..+......++..+ .|++..++.+++....
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~ 202 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAAL 202 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 3455555555432 243 44444444454433 6777777777776543
No 464
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=21.64 E-value=3.1e+02 Score=21.70 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=16.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 011378 32 TYNTLINAYCREGFLEEAFQLMNSMSGKGL 61 (487)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 61 (487)
.+..++-.+...|+++.|+++.+...++|.
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 344444455556666666666655555554
No 465
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=21.56 E-value=1.1e+03 Score=25.73 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011378 209 NTILNGLCRAKMLTEADDLFNEMLERGVFPDFYT--FTTLIHGHCKDGNMNKALNLFDIMTQKSIKPD 274 (487)
Q Consensus 209 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 274 (487)
...+...+..|+.+.+..++ +.|..+|... -.+.++..+..|+.+-+.- +.+.|..++
T Consensus 623 ~~~L~~Aa~~g~~~~v~~Ll----~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~----Ll~~GAdv~ 682 (823)
T PLN03192 623 GDLLCTAAKRNDLTAMKELL----KQGLNVDSEDHQGATALQVAMAEDHVDMVRL----LIMNGADVD 682 (823)
T ss_pred chHHHHHHHhCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHCCcHHHHHH----HHHcCCCCC
Confidence 34455556666666555444 3444433221 1123334455565554433 334554444
No 466
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=21.49 E-value=8.5e+02 Score=24.57 Aligned_cols=165 Identities=16% Similarity=0.182 Sum_probs=102.7
Q ss_pred CCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011378 273 PDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTII 352 (487)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 352 (487)
.|....-+++.-++.+-...-.+.+-.+|...| -+-..|-.++.+|... .-+.-..+|+.+.+..+. |.+.-.-|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355566677777777777666666666666544 2445667777878777 557777888877665432 222223344
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC--C---hhhHHHHHHHHhccCCHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHH
Q 011378 353 KGYCRSGDASKADEFLSKMVSEGVDP--D---SISYNTLINGFVREENMDKAFALVSKMEN-QGLVPDVITYNVILTGFC 426 (487)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~m~~~g~~p--~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~ 426 (487)
.-|- .++.+++..+|.+...+=++. + ...|.-|+..- ..+.|....+..+..+ .|-..-...+.-+-.-|.
T Consensus 140 ~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4444 377777777777766433321 1 12455554322 4556777777766654 354555666777777888
Q ss_pred hcCChHHHHHHHHHHHHc
Q 011378 427 RQGRMHDSELILWRMIEK 444 (487)
Q Consensus 427 ~~g~~~~a~~~~~~m~~~ 444 (487)
...++.+|.+++..+.+.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 888888888888877654
No 467
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=21.47 E-value=7.9e+02 Score=24.22 Aligned_cols=73 Identities=23% Similarity=0.386 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011378 313 YGILINGYCSMGHVTEAFRLWYEMVGKGIKP--TLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGF 390 (487)
Q Consensus 313 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 390 (487)
...|+.-|...|++.+|.+..+++ |.+- ...++.+++.+.-+.|+-.....+++..-++|. .|-+.|-.+|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf 584 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhh
Confidence 456777777777777777766554 3221 234567777777777776666666666655543 4455555555
Q ss_pred hc
Q 011378 391 VR 392 (487)
Q Consensus 391 ~~ 392 (487)
-+
T Consensus 585 ~R 586 (645)
T KOG0403|consen 585 ER 586 (645)
T ss_pred hh
Confidence 43
No 468
>PRK11906 transcriptional regulator; Provisional
Probab=21.31 E-value=8.1e+02 Score=24.26 Aligned_cols=144 Identities=11% Similarity=0.092 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHH-hCCCCCChh-hHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011378 291 MEKANKLWADMI-SRKISPNYI-SYGILINGYCS---------MGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSG 359 (487)
Q Consensus 291 ~~~a~~~~~~m~-~~~~~p~~~-t~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 359 (487)
.+.|..+|.+.. .+.+.|+.. .|..+-.++.. .....+|.++-+.-...+ +-|......+-.+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 455666676655 234455433 23333222221 112334444444333332 233444333333344456
Q ss_pred ChHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHhccCCHHHHHHHHHH-HHhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 011378 360 DASKADEFLSKMVSEGVDPDS---ISYNTLINGFVREENMDKAFALVSK-MENQGLVPDVITYNVILTGFCRQGRMHDSE 435 (487)
Q Consensus 360 ~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 435 (487)
+.+.|..+|+.... ..||. ..|..++. .-.|+.++|.+.+++ +.-...+-....-.-.|+.|+..+ ++++.
T Consensus 353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~--~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKI--HSTDIASLYYYRALVH--FHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhh--cCCccHHHHHHHHHHH--HHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 67888888876654 33543 33444443 347888888887777 332222223334444555666664 46666
Q ss_pred HHHHH
Q 011378 436 LILWR 440 (487)
Q Consensus 436 ~~~~~ 440 (487)
+++.+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 65554
No 469
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=21.19 E-value=7.5e+02 Score=23.83 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=22.9
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHH--hcCCHHHHHHHHHHH
Q 011378 286 CKVGEMEKANKLWADMISRKISPNYI--SYGILINGYC--SMGHVTEAFRLWYEM 336 (487)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~~~~p~~~--t~~~li~~~~--~~~~~~~a~~~~~~m 336 (487)
...+++..|.+++.++... ++++.. .+..+..+|. ..-++++|.+.++..
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3455666666666665554 333332 2333333332 233444455444443
No 470
>PHA02874 ankyrin repeat protein; Provisional
Probab=21.09 E-value=7.8e+02 Score=24.01 Aligned_cols=130 Identities=14% Similarity=0.162 Sum_probs=56.6
Q ss_pred hHHhcCChhhHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCc---cchHHHHHHHHhc
Q 011378 4 ALCKDHKIDSAKMFLCEMEQKGVYPDT--VTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGV---FTYNSLINGLCKK 78 (487)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~ 78 (487)
..+..|+++....+++. .+...+. ....+.+...++.|+.+-+..++ +.|..++. ..++.+.. .++.
T Consensus 7 ~ai~~gd~~~v~~ll~~---~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll----~~Ga~~n~~~~~~~t~L~~-A~~~ 78 (434)
T PHA02874 7 MCIYSGDIEAIEKIIKN---KGNCINISVDETTTPLIDAIRSGDAKIVELFI----KHGADINHINTKIPHPLLT-AIKI 78 (434)
T ss_pred HHHhcCCHHHHHHHHHc---CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHH-HHHc
Confidence 34566777665555542 1211111 11234455556677766655444 34544432 22333333 3345
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHhCCCHHHHHH
Q 011378 79 GRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVS--FSTLIGIFSRNGQLDRALM 156 (487)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~ 156 (487)
|+.+ +.+.+.+.|..++.... ...+ .++++.+.+.|..++... -.+.+...++.|+.+.+..
T Consensus 79 ~~~~----iv~~Ll~~g~~~~~~~~--------~~~~----~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~ 142 (434)
T PHA02874 79 GAHD----IIKLLIDNGVDTSILPI--------PCIE----KDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKM 142 (434)
T ss_pred CCHH----HHHHHHHCCCCCCcchh--------ccCC----HHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHH
Confidence 5543 33334444544332111 1111 234455555555543321 1234444556666655443
Q ss_pred H
Q 011378 157 Y 157 (487)
Q Consensus 157 ~ 157 (487)
+
T Consensus 143 L 143 (434)
T PHA02874 143 L 143 (434)
T ss_pred H
Confidence 3
No 471
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=20.88 E-value=3.3e+02 Score=19.67 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 226 DLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQ 268 (487)
Q Consensus 226 ~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (487)
++|+-....|+..|+..|.++++...-+-.++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 4555555556666666666666555555555555555555543
No 472
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=20.86 E-value=2.7e+02 Score=18.55 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=24.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-----hcCChHHHHHH
Q 011378 321 CSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYC-----RSGDASKADEF 367 (487)
Q Consensus 321 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-----~~~~~~~a~~~ 367 (487)
-..|++-+|-++++++-...-.+....+..||+... +.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345667777777776654333334445555555432 44555555443
No 473
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=20.79 E-value=2.6e+02 Score=19.25 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 011378 396 MDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSEL 436 (487)
Q Consensus 396 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 436 (487)
.+.+.+++..+.... ++..|...|+.++.+.|+.+.|.+
T Consensus 38 ~~~~~~mL~~W~~~~--~~~at~~~L~~aL~~~~~~~~a~~ 76 (79)
T cd01670 38 REQAYQLLLKWEERE--GDNATVGNLIEALREIGRRDDAAK 76 (79)
T ss_pred HHHHHHHHHHHHhcc--CcCcHHHHHHHHHHHcCHHHHHHH
Confidence 455666666665542 235566666666666666555544
No 474
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=20.69 E-value=8.4e+02 Score=24.22 Aligned_cols=105 Identities=23% Similarity=0.359 Sum_probs=60.9
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---ccchHHHHHHHHhcCC
Q 011378 6 CKDHKIDSAKMFLCEMEQKGVYPD--TVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPG---VFTYNSLINGLCKKGR 80 (487)
Q Consensus 6 ~~~~~~~~a~~~~~~~~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~ 80 (487)
+.+|+++-.+.+++ .|...+ +.|=++-+++.|=.|+++-...++ ++|..|+ .+--+.|+-+|. .|.
T Consensus 92 saAGHl~vVk~L~~----~ga~VN~tT~TNStPLraACfDG~leivKyLv----E~gad~~IanrhGhTcLmIa~y-kGh 162 (615)
T KOG0508|consen 92 SAAGHLEVVKLLLR----RGASVNDTTRTNSTPLRAACFDGHLEIVKYLV----EHGADPEIANRHGHTCLMIACY-KGH 162 (615)
T ss_pred hccCcHHHHHHHHH----hcCccccccccCCccHHHHHhcchhHHHHHHH----HcCCCCcccccCCCeeEEeeec-cCc
Confidence 34566655555443 343333 334446778877788877666555 4555443 333444444443 344
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHH--HHHHHHHHccCChhHHHHHH
Q 011378 81 CDRAKEVLDEMLQMGLSPDTATY--NTLLVESCRKENMSEAEEIF 123 (487)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~--~~ll~~~~~~~~~~~a~~~~ 123 (487)
.+ +.+.+.+.|..++..++ |+-+.-|+..|.++-..-++
T Consensus 163 ~~----I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll 203 (615)
T KOG0508|consen 163 VD----IAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLL 203 (615)
T ss_pred hH----HHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHH
Confidence 44 44455566777776665 77888888888876554444
No 475
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.66 E-value=5.1e+02 Score=23.04 Aligned_cols=54 Identities=19% Similarity=0.075 Sum_probs=25.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHH----HcC-CcCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 177 INGYCRNGFVLEALKMRDEML----EKG-CVMDVVTYNTILNGLCRAKMLTEADDLFNE 230 (487)
Q Consensus 177 l~~~~~~~~~~~a~~~~~~m~----~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 230 (487)
-.-|.+.|+.++|.++++.+. +.| ..+...+...+..++.+.|+.+....+--+
T Consensus 185 A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 334455555555555554442 122 223334444555555666666655554433
No 476
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=20.66 E-value=2.5e+02 Score=27.38 Aligned_cols=84 Identities=8% Similarity=0.110 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHHCCCCCCeeehHHHHHHHHccCCHH
Q 011378 223 EADDLFNEMLERGVFP---DFYTFTTLIHGHCKDGNMNKALNLFDI-------MTQKSIKPDIVTYNTLIDGFCKVGEME 292 (487)
Q Consensus 223 ~a~~~~~~m~~~~~~~---~~~t~~~li~~~~~~g~~~~a~~~~~~-------m~~~~~~~~~~~~~~li~~~~~~g~~~ 292 (487)
++..+++-+...|+.. .+.+|++ -|.+.-.+++++.-|+. ..++|+..+..++..+...++ ..-+.
T Consensus 109 d~~~l~e~~~a~g~~a~egg~isy~~---py~k~~~Le~si~~wqy~~rl~~~y~e~gv~in~E~fg~l~~~l~-pptla 184 (428)
T cd00245 109 DARLLAEIAIASGFDATEGGPISYNL---PYSKNVPLEKSIENWQYCDRLVGFYEENGVPINREPFGPLTGTLV-PPSIL 184 (428)
T ss_pred cHHHHHHHHHHhCcccccccceeecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceecccCCcCcccCcC-CcHHH
Confidence 3444455444444322 2234433 23444455666655522 235677777777766442222 23455
Q ss_pred HHHHHHHHHHhCCCCCCh
Q 011378 293 KANKLWADMISRKISPNY 310 (487)
Q Consensus 293 ~a~~~~~~m~~~~~~p~~ 310 (487)
-|..+++.....+...+.
T Consensus 185 ~aiaylea~la~glgV~~ 202 (428)
T cd00245 185 IAIQILEALLAAEQGVKS 202 (428)
T ss_pred HHHHHHHHHHHccCCCCE
Confidence 667777777666666555
No 477
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.19 E-value=8.1e+02 Score=23.82 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=41.1
Q ss_pred eehHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011378 276 VTYNTLIDGFCKVGEMEKANKLWADMISR--KISPNYISYGILINGYCSMGHVTEAFRLWYEMVG 338 (487)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 338 (487)
..+.-+-+.|..+|+++.|.+.+...... ...-.+..|-.+|..-.-.|+|........+-.+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 35777888888899999999988774321 1112334455566666667777777776665543
No 478
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=20.13 E-value=8.3e+02 Score=23.95 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=44.2
Q ss_pred cCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHH-----HHhcCCHHHHHHHHHHHHHCCC
Q 011378 199 KGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYT--FTTLIHG-----HCKDGNMNKALNLFDIMTQKSI 271 (487)
Q Consensus 199 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t--~~~li~~-----~~~~g~~~~a~~~~~~m~~~~~ 271 (487)
..+.||..+.|-+-+.++.....+-...+|+--.+++-+.-++. ..+||++ -.++..-++++++++.|-..--
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~ 256 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLS 256 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcc
Confidence 45667777766666666666666666666766665542111111 1112221 2234445667777766654322
Q ss_pred CCCeeehHHHHHHHH
Q 011378 272 KPDIVTYNTLIDGFC 286 (487)
Q Consensus 272 ~~~~~~~~~li~~~~ 286 (487)
--|+.-+-+|..-|+
T Consensus 257 ~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 257 VEDVPDFFSLAQYYS 271 (669)
T ss_pred cccchhHHHHHHHHh
Confidence 224444444444443
No 479
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=20.11 E-value=9.5e+02 Score=24.61 Aligned_cols=64 Identities=9% Similarity=0.101 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 011378 99 DTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLV 167 (487)
Q Consensus 99 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 167 (487)
....|+.|+..+ +.-+.++..++++++.. .+ ...+..++.+.+.+|-.....-+.++++...+.
T Consensus 309 ~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~---~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~ 372 (574)
T smart00638 309 AAAKFLRLVRLL-RTLSEEQLEQLWRQLYE---KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT 372 (574)
T ss_pred hHHHHHHHHHHH-HhCCHHHHHHHHHHHHh---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 334455555444 34445555666665543 11 345566666666666666666666666554443
No 480
>PF07827 KNTase_C: KNTase C-terminal domain; InterPro: IPR012481 Kanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit being composed of two domains. The C-terminal domain contains five alpha helices, four of which are organised into an up-and-down alpha helical bundle. Residues found in this domain may contribute to this enzyme's active site []. ; GO: 0016779 nucleotidyltransferase activity, 0046677 response to antibiotic; PDB: 1KNY_A.
Probab=20.10 E-value=2.9e+02 Score=22.04 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 011378 100 TATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIING 179 (487)
Q Consensus 100 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 179 (487)
...|.++|.++..+.-+.....++.+..+..-.|+. |..++. ...+|++..+..+++.... .|+.+...
T Consensus 59 ~A~~~AmliGL~Nr~~ytT~a~~l~Eal~Lp~rP~G--yd~l~~-lvm~G~L~d~~~i~~~cE~--------~W~Gl~~W 127 (143)
T PF07827_consen 59 LAWYGAMLIGLHNRTLYTTSARVLPEALSLPSRPSG--YDELAQ-LVMSGQLTDPEKIYESCEA--------LWTGLVKW 127 (143)
T ss_dssp HHHHHHHHHHHHCT---SSCCCHHHHHTTSSS--TT--HHHHHH-HHHHTB---HHHHHHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHhccceeeccccccHHHhcCCCCCcc--HHHHHH-HHhccccCCHHHHHHHHHH--------HHHHHHHH
Confidence 456777777887777777777777777766555654 444443 4566777777777766543 55555555
Q ss_pred HHhcC
Q 011378 180 YCRNG 184 (487)
Q Consensus 180 ~~~~~ 184 (487)
..+.|
T Consensus 128 a~~hg 132 (143)
T PF07827_consen 128 AAEHG 132 (143)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 55444
No 481
>PHA02989 ankyrin repeat protein; Provisional
Probab=20.10 E-value=8.8e+02 Score=24.23 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=37.0
Q ss_pred HHHHHHhhCCCCCCccc--hHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCCh--hHHHHHHHH
Q 011378 51 QLMNSMSGKGLKPGVFT--YNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATY-NTLLVESCRKENM--SEAEEIFCE 125 (487)
Q Consensus 51 ~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~~~~--~~a~~~~~~ 125 (487)
++.+.+.++|..+|... .+.+..+.++.+.. .++.+.+.+.|..++...+ .+-+..+++.+.. ....++.+.
T Consensus 17 ~~v~~LL~~GadvN~~~~g~t~l~~~~~~~~~~---~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~ 93 (494)
T PHA02989 17 NALEFLLRTGFDVNEEYRGNSILLLYLKRKDVK---IKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKL 93 (494)
T ss_pred HHHHHHHHcCCCcccccCCCCHHHHHHhcCCCC---hHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHHH
Confidence 44455556777776541 22333333332211 2344455556665553221 1222233333322 233456666
Q ss_pred HHHCCCCCCH
Q 011378 126 MSRRGVAPDI 135 (487)
Q Consensus 126 m~~~g~~p~~ 135 (487)
+.+.|..++.
T Consensus 94 Ll~~Gadin~ 103 (494)
T PHA02989 94 LLKFGADINL 103 (494)
T ss_pred HHHCCCCCCC
Confidence 6667765543
Done!