Query 011378
Match_columns 487
No_of_seqs 252 out of 2674
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 06:54:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.4E-39 1.2E-43 329.0 38.2 454 8-479 66-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.6E-37 2.2E-41 312.1 39.7 444 2-460 91-594 (597)
3 4g26_A Pentatricopeptide repea 100.0 9.6E-35 3.3E-39 285.5 23.8 206 223-428 8-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.6E-34 5.6E-39 283.8 24.0 207 257-463 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 3.4E-21 1.2E-25 185.1 46.7 372 75-462 9-385 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 6.2E-21 2.1E-25 183.3 45.2 323 74-408 42-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 4.4E-20 1.5E-24 184.0 35.9 402 33-444 9-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.4E-19 4.9E-24 180.2 38.1 402 3-416 14-483 (514)
9 2y4t_A DNAJ homolog subfamily 99.8 1.3E-17 4.4E-22 163.2 37.2 301 28-338 24-357 (450)
10 2y4t_A DNAJ homolog subfamily 99.8 2.4E-17 8.2E-22 161.3 38.1 311 64-408 25-357 (450)
11 3spa_A Mtrpol, DNA-directed RN 99.8 7.5E-21 2.5E-25 192.2 11.6 116 311-426 128-247 (1134)
12 3spa_A Mtrpol, DNA-directed RN 99.8 1.1E-20 3.8E-25 190.9 11.7 149 276-429 128-286 (1134)
13 3fp2_A TPR repeat-containing p 99.8 5.4E-16 1.9E-20 155.3 39.1 395 30-443 25-490 (537)
14 3fp2_A TPR repeat-containing p 99.8 1.3E-15 4.4E-20 152.6 39.5 391 4-409 34-491 (537)
15 1b89_A Protein (clathrin heavy 99.7 7E-16 2.4E-20 145.0 25.1 346 6-404 14-367 (449)
16 1b89_A Protein (clathrin heavy 99.7 5.2E-16 1.8E-20 145.9 21.9 239 42-322 15-253 (449)
17 2ooe_A Cleavage stimulation fa 99.7 4.5E-13 1.5E-17 134.0 43.4 413 29-477 12-490 (530)
18 2ooe_A Cleavage stimulation fa 99.7 3.5E-13 1.2E-17 134.7 42.5 381 64-480 12-455 (530)
19 3ieg_A DNAJ homolog subfamily 99.7 3.7E-13 1.3E-17 126.8 38.5 326 101-459 4-349 (359)
20 2xm6_A Protein corresponding t 99.7 4.9E-12 1.7E-16 125.1 48.0 338 78-445 56-433 (490)
21 2xm6_A Protein corresponding t 99.7 6.8E-12 2.3E-16 124.1 48.9 364 14-410 26-433 (490)
22 3ieg_A DNAJ homolog subfamily 99.7 2.6E-13 8.9E-18 127.9 36.5 311 30-373 3-334 (359)
23 3hym_B Cell division cycle pro 99.7 9.1E-14 3.1E-18 129.6 32.4 280 173-460 25-314 (330)
24 3hym_B Cell division cycle pro 99.7 1E-13 3.4E-18 129.3 32.4 267 64-336 21-296 (330)
25 1xi4_A Clathrin heavy chain; a 99.7 1E-11 3.5E-16 130.2 48.0 413 2-474 992-1440(1630)
26 1fch_A Peroxisomal targeting s 99.7 2.3E-14 8E-19 136.0 25.9 231 171-406 65-311 (368)
27 1fch_A Peroxisomal targeting s 99.7 4.1E-14 1.4E-18 134.3 27.1 302 42-369 37-354 (368)
28 4eqf_A PEX5-related protein; a 99.6 1.5E-13 5.3E-18 130.3 25.3 262 172-437 67-349 (365)
29 1xi4_A Clathrin heavy chain; a 99.6 3.7E-11 1.3E-15 126.1 43.4 379 32-472 987-1377(1630)
30 3mkr_A Coatomer subunit epsilo 99.6 2.1E-13 7.3E-18 124.8 24.2 249 179-443 8-263 (291)
31 4eqf_A PEX5-related protein; a 99.6 1.9E-13 6.5E-18 129.7 24.1 265 204-475 64-352 (365)
32 3mkr_A Coatomer subunit epsilo 99.6 3E-13 1E-17 123.8 23.8 246 6-267 10-262 (291)
33 3cv0_A Peroxisome targeting si 99.6 5.9E-13 2E-17 123.9 26.3 276 172-475 23-311 (327)
34 3cv0_A Peroxisome targeting si 99.6 1.4E-12 4.8E-17 121.3 27.4 277 134-440 20-311 (327)
35 3uq3_A Heat shock protein STI1 99.4 4.4E-11 1.5E-15 106.9 22.5 121 320-443 115-235 (258)
36 3uq3_A Heat shock protein STI1 99.4 7.5E-11 2.6E-15 105.4 23.6 224 242-479 7-236 (258)
37 4g1t_A Interferon-induced prot 99.4 1.4E-09 4.9E-14 106.7 32.9 199 66-268 52-275 (472)
38 4g1t_A Interferon-induced prot 99.4 2.5E-09 8.6E-14 104.9 34.2 391 28-453 49-469 (472)
39 1ouv_A Conserved hypothetical 99.4 1.7E-09 5.9E-14 97.8 30.2 223 204-444 5-251 (273)
40 1ouv_A Conserved hypothetical 99.4 2.2E-09 7.4E-14 97.1 30.4 222 29-268 5-250 (273)
41 2ho1_A Type 4 fimbrial biogene 99.3 5.5E-10 1.9E-14 99.6 25.2 197 243-443 40-237 (252)
42 2vq2_A PILW, putative fimbrial 99.3 5.3E-10 1.8E-14 97.5 24.4 128 207-336 10-139 (225)
43 2ho1_A Type 4 fimbrial biogene 99.3 4.7E-10 1.6E-14 100.0 23.9 201 275-479 37-238 (252)
44 3e4b_A ALGK; tetratricopeptide 99.3 1E-09 3.4E-14 107.0 27.9 346 36-410 9-388 (452)
45 2vq2_A PILW, putative fimbrial 99.3 1.2E-09 4E-14 95.3 25.4 211 239-454 7-219 (225)
46 1xnf_A Lipoprotein NLPI; TPR, 99.3 1E-10 3.6E-15 105.7 18.8 244 218-473 18-269 (275)
47 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.9E-10 6.6E-15 103.9 19.3 119 113-233 18-139 (275)
48 2pl2_A Hypothetical conserved 99.3 7.7E-10 2.6E-14 96.4 21.3 111 149-264 98-209 (217)
49 3u4t_A TPR repeat-containing p 99.3 1.6E-09 5.3E-14 97.8 23.9 128 208-337 6-135 (272)
50 3e4b_A ALGK; tetratricopeptide 99.2 4E-09 1.4E-13 102.8 27.3 378 71-478 9-420 (452)
51 4e6h_A MRNA 3'-END-processing 99.2 2.1E-07 7.1E-12 94.2 40.3 217 259-479 328-570 (679)
52 2pl2_A Hypothetical conserved 99.2 7.2E-10 2.5E-14 96.6 19.7 90 382-475 120-210 (217)
53 4e6h_A MRNA 3'-END-processing 99.2 3.3E-07 1.1E-11 92.8 41.2 438 14-460 52-584 (679)
54 2q7f_A YRRB protein; TPR, prot 99.2 1.1E-09 3.8E-14 96.8 20.3 200 239-443 22-221 (243)
55 3u4t_A TPR repeat-containing p 99.2 4.1E-09 1.4E-13 95.0 23.6 159 175-337 8-169 (272)
56 4a1s_A PINS, partner of inscut 99.2 3.6E-10 1.2E-14 108.7 16.4 276 173-477 51-370 (411)
57 2q7f_A YRRB protein; TPR, prot 99.2 2.7E-09 9.2E-14 94.3 20.5 195 68-267 26-220 (243)
58 4a1s_A PINS, partner of inscut 99.2 9E-10 3.1E-14 106.0 17.6 60 242-301 225-289 (411)
59 3sf4_A G-protein-signaling mod 99.2 2E-09 6.9E-14 103.0 20.0 91 69-161 13-113 (406)
60 3ro2_A PINS homolog, G-protein 99.2 9.3E-10 3.2E-14 102.2 17.0 133 347-479 185-332 (338)
61 3ro2_A PINS homolog, G-protein 99.1 1.4E-09 4.7E-14 101.0 17.4 61 348-408 266-331 (338)
62 3sf4_A G-protein-signaling mod 99.1 1.6E-09 5.5E-14 103.8 18.2 130 277-406 189-333 (406)
63 2ond_A Cleavage stimulation fa 99.1 5.3E-08 1.8E-12 89.7 27.3 233 206-444 9-270 (308)
64 3ulq_A Response regulator aspa 99.1 1.2E-08 4.2E-13 97.1 23.3 228 212-442 110-366 (383)
65 2ond_A Cleavage stimulation fa 99.1 8E-08 2.7E-12 88.4 27.4 233 171-409 9-270 (308)
66 3ulq_A Response regulator aspa 99.1 9.3E-09 3.2E-13 97.9 21.4 160 143-302 111-291 (383)
67 3nf1_A KLC 1, kinesin light ch 99.1 2.8E-09 9.7E-14 97.9 16.9 168 205-372 27-222 (311)
68 3nf1_A KLC 1, kinesin light ch 99.1 4.2E-09 1.4E-13 96.8 17.4 169 170-338 27-223 (311)
69 1hz4_A MALT regulatory protein 99.0 1.8E-07 6E-12 88.6 26.8 297 175-479 19-349 (373)
70 1hz4_A MALT regulatory protein 99.0 3.7E-07 1.3E-11 86.4 27.8 200 208-407 96-320 (373)
71 2h6f_A Protein farnesyltransfe 99.0 1.7E-07 5.7E-12 88.7 24.6 220 108-336 105-344 (382)
72 2h6f_A Protein farnesyltransfe 99.0 2.2E-07 7.6E-12 87.8 25.2 226 137-371 99-344 (382)
73 3q15_A PSP28, response regulat 99.0 2.1E-07 7.1E-12 88.4 24.5 227 213-442 109-363 (378)
74 3as5_A MAMA; tetratricopeptide 99.0 1E-07 3.5E-12 79.8 20.1 163 312-478 10-172 (186)
75 3q15_A PSP28, response regulat 99.0 1.1E-07 3.8E-12 90.3 22.1 159 144-302 110-288 (378)
76 3vtx_A MAMA; tetratricopeptide 98.9 5.6E-07 1.9E-11 75.6 22.1 164 276-443 6-169 (184)
77 4abn_A Tetratricopeptide repea 98.9 1.1E-07 3.7E-12 93.2 19.6 211 81-298 84-315 (474)
78 3edt_B KLC 2, kinesin light ch 98.9 3.1E-08 1.1E-12 89.4 14.6 227 251-478 12-280 (283)
79 3as5_A MAMA; tetratricopeptide 98.9 3.3E-07 1.1E-11 76.7 19.8 160 104-267 12-171 (186)
80 3vtx_A MAMA; tetratricopeptide 98.9 9E-07 3.1E-11 74.3 22.2 57 208-265 110-166 (184)
81 4abn_A Tetratricopeptide repea 98.9 1.3E-07 4.5E-12 92.6 19.1 206 221-435 84-312 (474)
82 3edt_B KLC 2, kinesin light ch 98.9 7.2E-08 2.5E-12 87.0 16.1 133 136-268 44-197 (283)
83 3mv2_B Coatomer subunit epsilo 98.7 3.5E-06 1.2E-10 75.9 21.5 178 294-478 85-281 (310)
84 2fo7_A Synthetic consensus TPR 98.7 1.4E-06 4.6E-11 68.4 17.1 94 382-477 37-130 (136)
85 2fo7_A Synthetic consensus TPR 98.7 1.5E-06 5.1E-11 68.2 17.3 130 312-444 3-132 (136)
86 3mv2_B Coatomer subunit epsilo 98.7 3.1E-06 1.1E-10 76.3 20.1 179 224-409 85-282 (310)
87 2uy1_A Cleavage stimulation fa 98.6 0.00011 3.6E-09 72.1 30.9 365 44-477 28-411 (493)
88 4i17_A Hypothetical protein; T 98.6 9.3E-06 3.2E-10 70.7 20.1 130 204-337 6-144 (228)
89 1qqe_A Vesicular transport pro 98.6 4.3E-06 1.5E-10 76.1 18.6 97 207-303 79-186 (292)
90 4gyw_A UDP-N-acetylglucosamine 98.6 4.1E-06 1.4E-10 85.7 20.2 159 276-441 10-171 (723)
91 1qqe_A Vesicular transport pro 98.5 7E-06 2.4E-10 74.7 19.5 204 116-336 33-266 (292)
92 4i17_A Hypothetical protein; T 98.5 1E-05 3.5E-10 70.4 19.6 192 274-478 6-208 (228)
93 4gyw_A UDP-N-acetylglucosamine 98.5 8.2E-06 2.8E-10 83.6 20.6 159 66-231 10-171 (723)
94 2uy1_A Cleavage stimulation fa 98.5 0.0004 1.4E-08 67.9 31.5 368 9-443 28-412 (493)
95 2ifu_A Gamma-SNAP; membrane fu 98.4 6.3E-06 2.2E-10 75.6 15.5 95 347-442 118-222 (307)
96 2ifu_A Gamma-SNAP; membrane fu 98.3 2.2E-05 7.5E-10 71.9 17.5 199 113-337 4-222 (307)
97 3u3w_A Transcriptional activat 98.3 0.00021 7.2E-09 64.8 23.4 161 317-477 82-264 (293)
98 3u3w_A Transcriptional activat 98.3 0.00018 6.1E-09 65.3 22.3 160 141-300 81-262 (293)
99 3qky_A Outer membrane assembly 98.2 8.1E-05 2.8E-09 66.2 18.4 182 277-478 17-223 (261)
100 3rjv_A Putative SEL1 repeat pr 98.2 0.00011 3.6E-09 63.2 18.4 126 136-268 19-157 (212)
101 3rjv_A Putative SEL1 repeat pr 98.2 0.00035 1.2E-08 59.9 21.5 164 309-481 17-199 (212)
102 3qky_A Outer membrane assembly 98.2 6.5E-05 2.2E-09 66.8 17.2 97 100-198 15-125 (261)
103 2yhc_A BAMD, UPF0169 lipoprote 98.1 0.00031 1.1E-08 60.8 19.8 178 278-479 7-213 (225)
104 2qfc_A PLCR protein; TPR, HTH, 98.1 0.00037 1.3E-08 63.1 20.9 121 354-474 124-261 (293)
105 2qfc_A PLCR protein; TPR, HTH, 98.1 0.00052 1.8E-08 62.2 21.4 125 141-265 121-262 (293)
106 3qou_A Protein YBBN; thioredox 98.1 9.6E-05 3.3E-09 66.9 16.0 166 307-477 114-282 (287)
107 2yhc_A BAMD, UPF0169 lipoprote 98.1 0.00077 2.6E-08 58.3 21.2 62 68-129 7-70 (225)
108 2r5s_A Uncharacterized protein 98.1 4E-05 1.4E-09 63.6 12.3 62 415-476 108-170 (176)
109 1hh8_A P67PHOX, NCF-2, neutrop 98.1 0.00025 8.5E-09 60.6 17.8 124 280-408 11-149 (213)
110 2vsy_A XCC0866; transferase, g 98.1 0.00012 4.1E-09 73.4 17.8 153 288-445 2-158 (568)
111 3qou_A Protein YBBN; thioredox 98.0 0.00011 3.7E-09 66.6 15.1 161 135-300 117-280 (287)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.0 0.0004 1.4E-08 59.3 18.0 124 141-269 12-150 (213)
113 2vsy_A XCC0866; transferase, g 98.0 0.00017 5.7E-09 72.3 17.6 152 253-409 2-157 (568)
114 2r5s_A Uncharacterized protein 98.0 6.4E-05 2.2E-09 62.4 11.9 60 240-299 108-168 (176)
115 2pzi_A Probable serine/threoni 98.0 0.00012 4.2E-09 74.9 16.2 150 286-441 402-560 (681)
116 3urz_A Uncharacterized protein 98.0 0.00021 7.1E-09 61.1 15.4 162 283-455 12-195 (208)
117 3gw4_A Uncharacterized protein 98.0 8.9E-05 3.1E-09 62.8 12.9 156 286-442 3-174 (203)
118 3urz_A Uncharacterized protein 98.0 0.00035 1.2E-08 59.7 16.3 57 106-163 60-116 (208)
119 1na0_A Designed protein CTPR3; 97.9 0.00032 1.1E-08 53.6 14.3 59 313-372 12-70 (125)
120 3gw4_A Uncharacterized protein 97.9 0.00016 5.4E-09 61.2 13.5 131 136-266 27-173 (203)
121 1na0_A Designed protein CTPR3; 97.9 0.00042 1.4E-08 52.9 14.8 98 345-444 9-106 (125)
122 2pzi_A Probable serine/threoni 97.9 0.00036 1.2E-08 71.4 17.9 173 111-289 402-582 (681)
123 1a17_A Serine/threonine protei 97.8 0.0007 2.4E-08 54.9 15.2 127 348-477 16-144 (166)
124 1a17_A Serine/threonine protei 97.8 0.00093 3.2E-08 54.1 15.5 127 312-441 15-143 (166)
125 3dra_A Protein farnesyltransfe 97.8 0.014 4.9E-07 52.7 23.7 216 45-266 48-284 (306)
126 2vyi_A SGTA protein; chaperone 97.8 0.00083 2.8E-08 51.7 13.9 92 313-406 15-106 (131)
127 4b4t_Q 26S proteasome regulato 97.7 0.0032 1.1E-07 60.3 20.4 194 248-441 12-242 (434)
128 2vyi_A SGTA protein; chaperone 97.7 0.0013 4.4E-08 50.6 14.0 120 344-466 11-130 (131)
129 2lni_A Stress-induced-phosphop 97.7 0.0012 4.1E-08 51.1 13.6 60 382-442 52-111 (133)
130 2lni_A Stress-induced-phosphop 97.6 0.0018 6E-08 50.1 13.9 95 137-233 18-112 (133)
131 4ga2_A E3 SUMO-protein ligase 97.6 0.00044 1.5E-08 55.6 10.0 82 350-435 36-119 (150)
132 4b4t_Q 26S proteasome regulato 97.6 0.0048 1.6E-07 59.1 18.9 196 213-408 12-244 (434)
133 1p5q_A FKBP52, FK506-binding p 97.6 0.0021 7.1E-08 59.5 15.5 131 309-442 146-292 (336)
134 1p5q_A FKBP52, FK506-binding p 97.5 0.0016 5.5E-08 60.2 14.7 129 275-406 147-291 (336)
135 4ga2_A E3 SUMO-protein ligase 97.5 0.00048 1.6E-08 55.3 9.7 19 141-159 71-89 (150)
136 2e2e_A Formate-dependent nitri 97.5 0.00078 2.7E-08 55.6 11.2 119 287-408 22-143 (177)
137 3gyz_A Chaperone protein IPGC; 97.5 0.0034 1.2E-07 50.3 14.4 95 347-444 38-133 (151)
138 2e2e_A Formate-dependent nitri 97.5 0.0011 3.7E-08 54.7 11.5 120 322-444 22-144 (177)
139 2kck_A TPR repeat; tetratricop 97.5 0.002 6.9E-08 47.9 11.9 96 382-478 8-105 (112)
140 3dra_A Protein farnesyltransfe 97.5 0.06 2.1E-06 48.6 24.9 219 9-234 47-287 (306)
141 4gco_A Protein STI-1; structur 97.4 0.0029 1E-07 48.9 12.7 95 347-443 15-109 (126)
142 2kck_A TPR repeat; tetratricop 97.4 0.0021 7.1E-08 47.8 11.6 94 208-302 9-104 (112)
143 3gyz_A Chaperone protein IPGC; 97.4 0.006 2.1E-07 48.8 14.8 95 137-233 38-132 (151)
144 4f3v_A ESX-1 secretion system 97.4 0.0028 9.4E-08 56.3 13.7 186 217-408 18-236 (282)
145 3q49_B STIP1 homology and U bo 97.4 0.0042 1.4E-07 48.4 13.7 99 343-443 7-105 (137)
146 4f3v_A ESX-1 secretion system 97.4 0.0023 8E-08 56.7 13.2 126 106-234 108-237 (282)
147 1elw_A TPR1-domain of HOP; HOP 97.4 0.0083 2.8E-07 44.8 14.8 56 315-371 9-64 (118)
148 2c2l_A CHIP, carboxy terminus 97.4 0.0083 2.8E-07 53.8 16.7 91 208-301 7-98 (281)
149 1elw_A TPR1-domain of HOP; HOP 97.4 0.0039 1.3E-07 46.7 12.6 98 345-444 4-101 (118)
150 4gco_A Protein STI-1; structur 97.4 0.0069 2.3E-07 46.7 14.0 96 311-408 14-109 (126)
151 2c2l_A CHIP, carboxy terminus 97.4 0.0055 1.9E-07 55.0 15.3 95 172-268 6-100 (281)
152 1elr_A TPR2A-domain of HOP; HO 97.4 0.0038 1.3E-07 47.9 12.6 94 349-443 8-107 (131)
153 3ro3_A PINS homolog, G-protein 97.4 0.0018 6E-08 51.9 11.0 60 207-266 91-155 (164)
154 3ro3_A PINS homolog, G-protein 97.4 0.0015 5.1E-08 52.4 10.6 97 382-478 51-157 (164)
155 2vgx_A Chaperone SYCD; alterna 97.3 0.004 1.4E-07 49.7 12.5 98 344-444 20-118 (148)
156 1elr_A TPR2A-domain of HOP; HO 97.3 0.0032 1.1E-07 48.3 11.6 96 138-234 7-108 (131)
157 2xcb_A PCRH, regulatory protei 97.3 0.0045 1.5E-07 48.9 12.6 97 346-444 19-115 (142)
158 2fbn_A 70 kDa peptidylprolyl i 97.3 0.0058 2E-07 51.4 13.5 26 313-338 41-66 (198)
159 3upv_A Heat shock protein STI1 97.3 0.0068 2.3E-07 46.5 12.9 96 346-444 5-101 (126)
160 3q49_B STIP1 homology and U bo 97.2 0.0077 2.6E-07 46.8 13.4 99 308-408 7-105 (137)
161 2dba_A Smooth muscle cell asso 97.2 0.018 6.2E-07 45.1 15.7 95 136-233 29-127 (148)
162 2dba_A Smooth muscle cell asso 97.2 0.015 5.1E-07 45.7 15.1 93 347-443 30-127 (148)
163 3sz7_A HSC70 cochaperone (SGT) 97.2 0.0065 2.2E-07 49.2 12.8 99 344-444 10-108 (164)
164 4gcn_A Protein STI-1; structur 97.2 0.009 3.1E-07 46.1 13.0 101 138-242 11-118 (127)
165 2vgx_A Chaperone SYCD; alterna 97.2 0.0066 2.2E-07 48.4 12.4 95 312-408 23-117 (148)
166 2fbn_A 70 kDa peptidylprolyl i 97.2 0.011 3.9E-07 49.5 14.5 26 138-163 41-66 (198)
167 2xcb_A PCRH, regulatory protei 97.2 0.0072 2.4E-07 47.6 12.4 95 312-408 20-114 (142)
168 3upv_A Heat shock protein STI1 97.2 0.013 4.4E-07 44.8 13.6 96 311-408 5-100 (126)
169 4gcn_A Protein STI-1; structur 97.1 0.0037 1.3E-07 48.4 10.0 59 208-267 11-69 (127)
170 3sz7_A HSC70 cochaperone (SGT) 97.1 0.0078 2.7E-07 48.7 12.2 99 309-409 10-108 (164)
171 2xev_A YBGF; tetratricopeptide 97.1 0.011 3.8E-07 45.3 12.5 91 350-444 7-105 (129)
172 3n71_A Histone lysine methyltr 97.0 0.0048 1.6E-07 59.9 11.2 97 137-233 353-463 (490)
173 3n71_A Histone lysine methyltr 96.9 0.0061 2.1E-07 59.2 11.2 87 285-371 319-419 (490)
174 3k9i_A BH0479 protein; putativ 96.9 0.0023 8E-08 48.6 6.8 83 289-372 4-88 (117)
175 3k9i_A BH0479 protein; putativ 96.8 0.0024 8.3E-08 48.5 6.5 84 359-443 4-89 (117)
176 1hxi_A PEX5, peroxisome target 96.8 0.014 5E-07 44.4 10.7 88 386-477 23-112 (121)
177 1wao_1 Serine/threonine protei 96.7 0.0075 2.6E-07 58.7 10.8 114 356-474 17-134 (477)
178 2xev_A YBGF; tetratricopeptide 96.7 0.035 1.2E-06 42.3 12.9 23 315-337 44-66 (129)
179 1hxi_A PEX5, peroxisome target 96.6 0.018 6.3E-07 43.8 10.3 89 72-162 24-112 (121)
180 1wao_1 Serine/threonine protei 96.6 0.0093 3.2E-07 58.0 10.3 116 285-404 16-134 (477)
181 1klx_A Cysteine rich protein B 96.6 0.15 5.3E-06 39.6 15.5 111 360-481 10-128 (138)
182 1kt0_A FKBP51, 51 kDa FK506-bi 96.5 0.042 1.4E-06 53.1 14.2 128 312-442 270-413 (457)
183 3q7a_A Farnesyltransferase alp 96.5 0.52 1.8E-05 43.2 23.1 32 237-268 299-330 (349)
184 3mkq_A Coatomer beta'-subunit; 96.4 0.046 1.6E-06 57.0 15.1 75 244-336 633-707 (814)
185 1kt0_A FKBP51, 51 kDa FK506-bi 96.4 0.041 1.4E-06 53.1 13.5 89 310-401 317-406 (457)
186 1ihg_A Cyclophilin 40; ppiase 96.4 0.042 1.4E-06 51.3 13.1 88 380-471 273-362 (370)
187 3mkq_A Coatomer beta'-subunit; 96.4 0.052 1.8E-06 56.6 15.1 150 111-299 610-760 (814)
188 1klx_A Cysteine rich protein B 96.3 0.17 5.8E-06 39.4 14.2 16 115-130 10-25 (138)
189 1ihg_A Cyclophilin 40; ppiase 96.3 0.043 1.5E-06 51.3 12.4 120 313-436 226-362 (370)
190 3q7a_A Farnesyltransferase alp 96.2 0.72 2.5E-05 42.2 23.9 168 82-255 71-257 (349)
191 3rkv_A Putative peptidylprolyl 96.1 0.095 3.3E-06 42.0 12.1 60 347-407 65-124 (162)
192 3rkv_A Putative peptidylprolyl 96.0 0.22 7.5E-06 39.8 14.1 69 380-451 63-131 (162)
193 2if4_A ATFKBP42; FKBP-like, al 95.9 0.022 7.4E-07 52.6 8.4 145 310-477 179-326 (338)
194 2l6j_A TPR repeat-containing p 95.6 0.048 1.7E-06 40.1 7.8 61 382-443 6-66 (111)
195 2hr2_A Hypothetical protein; a 95.5 0.29 9.9E-06 39.0 12.2 61 207-267 59-129 (159)
196 2kat_A Uncharacterized protein 95.5 0.12 4.3E-06 38.4 9.8 79 363-443 3-81 (115)
197 2l6j_A TPR repeat-containing p 95.4 0.063 2.2E-06 39.5 8.0 62 311-373 5-66 (111)
198 2hr2_A Hypothetical protein; a 95.4 0.21 7.1E-06 39.9 11.1 61 312-372 59-129 (159)
199 2if4_A ATFKBP42; FKBP-like, al 95.4 0.06 2.1E-06 49.6 9.2 112 241-372 180-291 (338)
200 3qww_A SET and MYND domain-con 95.3 0.11 3.9E-06 49.4 11.0 60 417-476 342-408 (433)
201 3mkq_B Coatomer subunit alpha; 95.1 0.74 2.5E-05 37.2 13.5 97 322-439 17-113 (177)
202 1na3_A Designed protein CTPR2; 95.1 0.27 9.3E-06 34.3 10.3 61 382-443 11-71 (91)
203 3qwp_A SET and MYND domain-con 95.1 0.14 4.8E-06 48.7 10.8 91 352-442 294-398 (429)
204 1na3_A Designed protein CTPR2; 95.0 0.26 8.8E-06 34.4 9.9 60 348-408 12-71 (91)
205 2kat_A Uncharacterized protein 94.9 0.27 9.2E-06 36.5 10.3 59 102-161 21-79 (115)
206 3ma5_A Tetratricopeptide repea 94.9 0.19 6.5E-06 36.4 9.0 64 379-443 6-69 (100)
207 3ma5_A Tetratricopeptide repea 94.7 0.19 6.4E-06 36.4 8.6 58 207-265 9-66 (100)
208 3qwp_A SET and MYND domain-con 94.6 0.24 8.3E-06 47.1 11.2 58 207-264 331-395 (429)
209 3qww_A SET and MYND domain-con 94.5 0.21 7.3E-06 47.5 10.5 61 206-266 341-408 (433)
210 3mkq_B Coatomer subunit alpha; 93.7 2.1 7.3E-05 34.5 13.3 44 77-126 17-60 (177)
211 3ly7_A Transcriptional activat 93.2 1.8 6.1E-05 39.7 13.5 73 378-454 275-347 (372)
212 3ly7_A Transcriptional activat 93.2 2.3 7.9E-05 39.0 14.2 62 413-476 275-336 (372)
213 3dss_A Geranylgeranyl transfer 92.8 5.5 0.00019 36.1 21.8 220 41-268 40-303 (331)
214 3dss_A Geranylgeranyl transfer 92.5 5.9 0.0002 35.9 23.0 220 76-303 40-303 (331)
215 1wy6_A Hypothetical protein ST 92.5 2.8 9.4E-05 32.1 15.9 67 310-377 91-157 (172)
216 2kc7_A BFR218_protein; tetratr 92.0 0.56 1.9E-05 33.4 7.3 52 390-443 10-63 (99)
217 1zu2_A Mitochondrial import re 91.3 0.69 2.3E-05 36.8 7.4 60 116-179 62-133 (158)
218 1zu2_A Mitochondrial import re 91.2 0.53 1.8E-05 37.4 6.6 30 362-393 63-93 (158)
219 2v5f_A Prolyl 4-hydroxylase su 90.8 1.8 6.1E-05 31.4 9.0 70 379-450 4-79 (104)
220 1n11_A Ankyrin; clathrin, BAND 90.8 4.3 0.00015 38.3 14.1 356 71-476 17-399 (437)
221 1pc2_A Mitochondria fission pr 90.5 3.7 0.00013 32.2 10.7 85 82-170 15-104 (152)
222 1wdy_A 2-5A-dependent ribonucl 90.4 4.4 0.00015 35.3 12.9 19 35-53 7-25 (285)
223 2kc7_A BFR218_protein; tetratr 89.9 2 6.9E-05 30.3 8.6 52 320-372 10-62 (99)
224 1pc2_A Mitochondria fission pr 89.9 2.9 0.0001 32.8 9.7 65 378-443 30-99 (152)
225 1wdy_A 2-5A-dependent ribonucl 89.4 4.5 0.00015 35.2 12.2 15 365-379 199-213 (285)
226 1dce_A Protein (RAB geranylger 88.8 19 0.00065 35.4 18.8 136 116-255 89-241 (567)
227 1k1a_A B-cell lymphoma 3-encod 88.7 3.1 0.00011 35.3 10.3 21 40-60 16-36 (241)
228 3eu9_A Huntingtin-interacting 88.4 2.4 8.1E-05 36.0 9.3 50 212-265 181-232 (240)
229 3bee_A Putative YFRE protein; 88.3 5.2 0.00018 28.3 9.8 46 396-443 25-71 (93)
230 1wy6_A Hypothetical protein ST 88.0 7.5 0.00026 29.8 15.7 63 383-446 94-156 (172)
231 1v54_E Cytochrome C oxidase po 87.9 2.5 8.6E-05 30.3 7.1 62 395-457 25-86 (109)
232 1dce_A Protein (RAB geranylger 87.9 22 0.00075 35.0 18.4 174 41-220 39-241 (567)
233 2v5f_A Prolyl 4-hydroxylase su 87.9 3.9 0.00013 29.5 8.9 57 210-266 10-72 (104)
234 3bee_A Putative YFRE protein; 86.8 6.5 0.00022 27.7 9.2 48 221-269 25-72 (93)
235 1v54_E Cytochrome C oxidase po 86.1 7.4 0.00025 27.9 8.7 62 116-178 26-87 (109)
236 4h7y_A Dual specificity protei 85.7 9.4 0.00032 29.8 9.9 112 344-458 12-136 (161)
237 1nzn_A CGI-135 protein, fissio 85.6 8.2 0.00028 29.1 9.4 86 357-444 13-103 (126)
238 3eu9_A Huntingtin-interacting 84.7 3.2 0.00011 35.1 8.1 52 422-477 181-234 (240)
239 1n11_A Ankyrin; clathrin, BAND 84.5 19 0.00063 33.8 14.1 357 35-441 16-399 (437)
240 3u64_A Protein TP_0956; tetrat 84.3 11 0.00037 33.3 11.0 93 117-211 180-283 (301)
241 2ff4_A Probable regulatory pro 84.0 4.7 0.00016 37.6 9.4 67 385-452 176-247 (388)
242 4b4t_P 26S proteasome regulato 84.0 29 0.001 32.8 17.9 92 315-406 142-244 (445)
243 4b4t_P 26S proteasome regulato 82.7 33 0.0011 32.5 18.6 187 254-442 30-245 (445)
244 3u64_A Protein TP_0956; tetrat 82.5 12 0.00039 33.1 10.4 68 240-307 199-272 (301)
245 1k1a_A B-cell lymphoma 3-encod 82.0 9 0.00031 32.3 9.9 21 76-96 17-37 (241)
246 3lvg_A Clathrin heavy chain 1; 82.0 4.1E-05 1.4E-09 71.7 -25.2 202 239-472 82-284 (624)
247 2y69_E Cytochrome C oxidase su 81.1 10 0.00035 28.8 8.1 62 395-457 68-129 (152)
248 3jxi_A Vanilloid receptor-rela 80.4 2.4 8.3E-05 36.6 5.7 55 37-91 9-72 (260)
249 2ff4_A Probable regulatory pro 79.9 7.1 0.00024 36.3 8.9 68 417-485 173-245 (388)
250 4fhn_B Nucleoporin NUP120; pro 79.5 49 0.0017 35.8 16.5 91 348-440 941-1045(1139)
251 2y69_E Cytochrome C oxidase su 79.4 16 0.00054 27.8 8.7 60 118-178 71-130 (152)
252 4gns_B Protein CSD3, chitin bi 79.2 13 0.00045 37.8 11.0 127 139-266 252-397 (754)
253 3lvg_A Clathrin heavy chain 1; 79.2 0.012 4.1E-07 55.5 -9.9 219 138-393 57-276 (624)
254 3aji_A 26S proteasome non-ATPa 79.1 13 0.00044 31.1 9.8 19 37-55 10-28 (231)
255 4h7y_A Dual specificity protei 78.3 22 0.00076 27.7 10.6 52 219-271 74-125 (161)
256 3hra_A Ankyrin repeat family p 78.2 8.6 0.00029 31.3 8.2 17 38-54 10-26 (201)
257 3eiq_C Programmed cell death p 74.5 51 0.0017 30.0 12.6 26 207-232 56-81 (358)
258 3jxi_A Vanilloid receptor-rela 73.2 4.9 0.00017 34.6 5.6 24 76-99 13-36 (260)
259 4gns_B Protein CSD3, chitin bi 72.1 89 0.003 31.8 14.9 52 423-476 345-397 (754)
260 3kea_A K1L; tropism, ANK repea 72.0 33 0.0011 29.9 10.9 223 7-263 8-241 (285)
261 3aji_A 26S proteasome non-ATPa 71.9 26 0.00088 29.1 9.8 87 3-99 11-100 (231)
262 3kea_A K1L; tropism, ANK repea 70.2 38 0.0013 29.5 10.8 84 67-159 31-116 (285)
263 4fhn_B Nucleoporin NUP120; pro 70.1 45 0.0015 36.1 13.2 87 102-190 901-991 (1139)
264 3b7b_A Euchromatic histone-lys 68.4 17 0.00057 30.5 7.8 18 461-478 218-235 (237)
265 3t8k_A Uncharacterized protein 68.0 29 0.00098 28.0 8.9 65 35-99 40-108 (186)
266 2etb_A Transient receptor pote 67.0 28 0.00096 29.6 9.1 57 36-92 5-70 (256)
267 3utm_A Tankyrase-1; tankyrase, 66.6 70 0.0024 28.4 12.5 111 36-159 27-145 (351)
268 1nzn_A CGI-135 protein, fissio 65.9 40 0.0014 25.3 11.0 81 81-163 17-102 (126)
269 4b4t_R RPN7, 26S proteasome re 63.9 56 0.0019 30.7 11.1 97 207-305 133-238 (429)
270 3lpz_A GET4 (YOR164C homolog); 63.2 86 0.0029 28.2 21.0 165 279-477 39-214 (336)
271 3t8k_A Uncharacterized protein 63.2 56 0.0019 26.3 9.7 28 107-134 42-69 (186)
272 3b7b_A Euchromatic histone-lys 62.7 26 0.0009 29.2 8.0 208 211-443 14-235 (237)
273 3hra_A Ankyrin repeat family p 62.0 31 0.0011 27.8 8.1 15 365-379 158-172 (201)
274 4b4t_R RPN7, 26S proteasome re 61.7 67 0.0023 30.1 11.2 96 311-406 132-234 (429)
275 2rfa_A Transient receptor pote 60.3 48 0.0017 27.4 9.2 17 37-53 7-23 (232)
276 3eiq_C Programmed cell death p 60.0 77 0.0026 28.9 10.6 25 103-127 57-81 (358)
277 3esl_A Checkpoint serine/threo 57.6 67 0.0023 26.4 8.8 53 326-378 95-148 (202)
278 3ffl_A Anaphase-promoting comp 57.6 48 0.0016 26.3 7.7 68 165-232 13-90 (167)
279 4g8k_A 2-5A-dependent ribonucl 56.9 1.1E+02 0.0036 27.2 15.2 275 33-345 25-329 (337)
280 2f8y_A Notch homolog 1, transl 55.9 70 0.0024 26.1 9.4 46 35-85 27-75 (223)
281 2uwj_G Type III export protein 55.6 53 0.0018 23.4 7.1 14 76-89 50-63 (115)
282 3ljn_A Hypothetical protein; a 55.6 68 0.0023 28.9 10.0 209 34-265 21-266 (364)
283 2fu4_A Ferric uptake regulatio 55.6 44 0.0015 22.5 6.7 60 405-465 7-67 (83)
284 2p58_C Putative type III secre 54.8 56 0.0019 23.4 7.9 47 75-127 50-96 (116)
285 2pnn_A Transient receptor pote 54.7 32 0.0011 29.6 7.3 57 35-91 15-80 (273)
286 3lpz_A GET4 (YOR164C homolog); 53.9 1.2E+02 0.0043 27.1 20.6 112 137-263 37-159 (336)
287 2yru_A Steroid receptor RNA ac 53.7 65 0.0022 23.8 7.5 41 403-443 49-89 (118)
288 3esl_A Checkpoint serine/threo 53.2 77 0.0027 26.0 8.5 56 359-414 93-149 (202)
289 3twr_A Tankyrase-2; ankyrin re 52.7 32 0.0011 26.7 6.4 19 36-54 11-29 (165)
290 2uwj_G Type III export protein 52.2 62 0.0021 23.1 6.6 50 179-234 48-97 (115)
291 3d9h_A CDNA FLJ77766, highly s 51.8 45 0.0016 29.0 7.8 24 32-55 14-37 (285)
292 2p58_C Putative type III secre 51.3 64 0.0022 23.1 7.4 49 179-233 49-97 (116)
293 2fe3_A Peroxide operon regulat 50.6 61 0.0021 24.9 7.4 61 124-185 11-71 (145)
294 3twr_A Tankyrase-2; ankyrin re 50.4 44 0.0015 25.8 6.9 116 319-450 14-136 (165)
295 2keb_A DNA polymerase subunit 48.6 68 0.0023 22.7 6.3 30 119-148 28-57 (101)
296 2fe3_A Peroxide operon regulat 48.5 66 0.0022 24.7 7.3 59 405-464 12-70 (145)
297 2xig_A Ferric uptake regulatio 48.4 63 0.0022 25.0 7.2 61 404-465 16-76 (150)
298 2ion_A PDCD4, programmed cell 47.6 92 0.0031 24.2 7.9 65 347-412 11-77 (152)
299 2qx5_A Nucleoporin NIC96; mRNA 46.9 2.3E+02 0.008 28.2 19.1 25 277-301 355-382 (661)
300 1mzb_A Ferric uptake regulatio 46.8 60 0.0021 24.6 6.8 61 125-186 8-69 (136)
301 3ffl_A Anaphase-promoting comp 46.7 1.1E+02 0.0036 24.3 8.7 19 456-474 128-146 (167)
302 2dzn_A Probable 26S proteasome 46.2 49 0.0017 27.2 6.9 19 37-55 6-24 (228)
303 4g8k_A 2-5A-dependent ribonucl 45.7 1.6E+02 0.0054 26.0 14.3 19 105-123 27-45 (337)
304 1mzb_A Ferric uptake regulatio 45.4 69 0.0024 24.2 6.9 58 371-429 9-67 (136)
305 2zu6_B Programmed cell death p 45.0 1.7E+02 0.0056 26.0 12.3 68 383-451 169-238 (307)
306 2xig_A Ferric uptake regulatio 44.2 62 0.0021 25.0 6.6 61 124-185 16-76 (150)
307 2rfa_A Transient receptor pote 44.0 1.3E+02 0.0045 24.6 10.1 49 4-55 9-59 (232)
308 2nsz_A Programmed cell death p 43.6 1E+02 0.0035 23.1 9.7 65 347-412 9-75 (129)
309 3ljn_A Hypothetical protein; a 43.0 1.4E+02 0.0049 26.7 10.0 48 389-440 217-266 (364)
310 3eyy_A Putative iron uptake re 41.9 59 0.002 25.0 6.1 34 431-464 33-66 (145)
311 2w57_A Ferric uptake regulatio 41.7 76 0.0026 24.5 6.7 34 431-464 33-66 (150)
312 3eyy_A Putative iron uptake re 40.9 59 0.002 25.0 5.9 60 124-185 8-67 (145)
313 3utm_A Tankyrase-1; tankyrase, 40.7 1.9E+02 0.0064 25.4 13.8 243 5-275 31-308 (351)
314 1oai_A Nuclear RNA export fact 40.6 18 0.0006 23.0 2.2 25 463-487 33-57 (59)
315 2d2s_A Exocyst complex compone 39.1 1.2E+02 0.0041 25.6 7.9 18 4-21 27-44 (235)
316 2w57_A Ferric uptake regulatio 38.9 74 0.0025 24.6 6.2 60 125-185 7-67 (150)
317 4a1g_A Mitotic checkpoint seri 38.6 1E+02 0.0034 24.0 6.7 52 118-169 83-135 (152)
318 2pnn_A Transient receptor pote 38.1 52 0.0018 28.2 5.9 30 66-96 12-41 (273)
319 4a1g_A Mitotic checkpoint seri 37.2 1.5E+02 0.005 23.1 8.3 15 392-406 113-127 (152)
320 2d2s_A Exocyst complex compone 37.1 1.9E+02 0.0064 24.4 8.9 29 134-162 90-118 (235)
321 1bd8_A P19INK4D CDK4/6 inhibit 36.9 52 0.0018 25.0 5.2 20 36-55 5-24 (156)
322 1bd8_A P19INK4D CDK4/6 inhibit 36.6 57 0.0019 24.8 5.4 15 250-264 9-23 (156)
323 2keb_A DNA polymerase subunit 35.8 1.2E+02 0.0039 21.5 6.7 31 364-394 28-58 (101)
324 1zbp_A Hypothetical protein VP 35.6 1E+02 0.0035 26.7 6.9 20 351-370 37-56 (273)
325 2wvi_A Mitotic checkpoint seri 35.3 1.1E+02 0.0039 24.1 6.7 52 82-133 77-129 (164)
326 2etb_A Transient receptor pote 34.8 77 0.0026 26.7 6.4 55 4-58 8-71 (256)
327 2dzn_A Probable 26S proteasome 34.6 1.2E+02 0.0043 24.6 7.6 18 247-264 6-23 (228)
328 2xai_A ASB-9, ankyrin repeat a 34.2 2E+02 0.007 24.1 9.1 10 38-47 41-50 (261)
329 3d9h_A CDNA FLJ77766, highly s 33.7 1.6E+02 0.0054 25.3 8.4 26 35-64 61-86 (285)
330 4ets_A Ferric uptake regulatio 33.6 1E+02 0.0035 24.2 6.3 61 125-186 23-85 (162)
331 4ets_A Ferric uptake regulatio 32.8 1.1E+02 0.0038 24.0 6.4 41 424-464 41-83 (162)
332 2ion_A PDCD4, programmed cell 32.5 1.7E+02 0.0059 22.6 7.7 23 244-266 13-35 (152)
333 2b7e_A PRE-mRNA processing pro 30.5 34 0.0011 21.7 2.3 29 222-250 3-31 (59)
334 1ug3_A EIF4GI, eukaryotic prot 30.4 1.7E+02 0.0059 26.3 8.1 22 105-126 16-37 (339)
335 1wgl_A TOLL-interacting protei 30.1 73 0.0025 20.1 3.9 24 462-485 35-58 (59)
336 3f6q_A Integrin-linked protein 30.0 1.6E+02 0.0054 22.9 7.2 15 40-54 12-26 (179)
337 2wpv_A GET4, UPF0363 protein Y 29.9 2.9E+02 0.01 24.4 23.0 126 38-193 21-157 (312)
338 3l6a_A Eukaryotic translation 28.9 3.3E+02 0.011 24.7 10.8 24 69-92 16-39 (364)
339 2ijq_A Hypothetical protein; s 27.8 2.2E+02 0.0075 22.3 7.4 51 183-233 45-103 (161)
340 2o03_A Probable zinc uptake re 27.8 97 0.0033 23.2 5.1 43 387-429 17-59 (131)
341 4b4t_S RPN3, 26S proteasome re 27.7 97 0.0033 29.8 6.0 62 277-338 233-298 (523)
342 1dp3_A TRAM protein; helix-loo 26.2 41 0.0014 20.7 2.0 42 3-44 4-45 (55)
343 3bu8_A Telomeric repeat-bindin 26.1 2.1E+02 0.0073 23.7 6.8 20 73-92 122-141 (235)
344 2xai_A ASB-9, ankyrin repeat a 26.0 2.5E+02 0.0085 23.5 8.2 18 36-53 6-23 (261)
345 1awc_B Protein (GA binding pro 25.1 2.2E+02 0.0074 21.3 7.6 19 36-54 5-23 (153)
346 2wpv_A GET4, UPF0363 protein Y 25.1 3.6E+02 0.012 23.9 23.2 164 280-477 38-215 (312)
347 4aez_C MAD3, mitotic spindle c 25.1 1.2E+02 0.0041 25.3 5.4 52 327-378 131-183 (223)
348 4aez_C MAD3, mitotic spindle c 25.0 1.7E+02 0.0058 24.5 6.3 54 117-170 131-185 (223)
349 3mwm_A ZUR, putative metal upt 25.0 98 0.0034 23.5 4.7 45 385-429 18-62 (139)
350 4fke_A Aminopeptidase N; zinc 24.9 6.1E+02 0.021 26.4 17.9 89 35-128 691-786 (909)
351 3c1d_A Protein ORAA, regulator 24.8 2.5E+02 0.0084 21.8 11.8 101 80-185 45-145 (159)
352 3v31_A Ankyrin repeat family A 24.1 2.4E+02 0.0081 21.4 9.0 14 6-19 11-24 (167)
353 1ug3_A EIF4GI, eukaryotic prot 24.0 1.6E+02 0.0054 26.5 6.6 65 312-377 13-78 (339)
354 4gpm_A Engineered protein OR26 24.0 2.5E+02 0.0087 21.8 8.1 43 111-157 78-122 (169)
355 4fke_A Aminopeptidase N; zinc 23.9 6.3E+02 0.022 26.3 18.3 24 279-302 762-785 (909)
356 1qsa_A Protein (soluble lytic 23.6 5.4E+02 0.018 25.4 22.8 116 290-408 229-347 (618)
357 1yyh_A HN1;, notch 1, ankyrin 23.3 1.4E+02 0.0047 25.0 5.9 10 265-274 208-217 (253)
358 3v30_A DNA-binding protein rfx 23.2 1.6E+02 0.0054 22.6 5.9 151 2-163 6-160 (172)
359 2nsz_A Programmed cell death p 22.8 2.4E+02 0.0082 21.0 9.0 23 244-266 11-33 (129)
360 3bu8_A Telomeric repeat-bindin 22.7 1.9E+02 0.0065 24.0 5.9 49 116-164 88-143 (235)
361 3l6a_A Eukaryotic translation 21.9 4.5E+02 0.015 23.8 11.2 61 33-97 15-80 (364)
362 1yyh_A HN1;, notch 1, ankyrin 21.8 1.7E+02 0.0058 24.5 6.2 171 34-226 58-241 (253)
363 4b4t_S RPN3, 26S proteasome re 21.8 5.4E+02 0.018 24.7 12.2 63 66-128 232-298 (523)
364 2ijq_A Hypothetical protein; s 21.7 2.9E+02 0.01 21.6 7.1 52 322-373 44-103 (161)
365 1v3f_A Pleckstrin 2; three-hel 21.6 1.5E+02 0.005 22.0 4.8 49 13-61 7-71 (120)
366 2zu6_B Programmed cell death p 20.9 4.3E+02 0.015 23.3 11.7 25 138-162 6-30 (307)
367 3qil_A Clathrin heavy chain 1; 20.9 78 0.0027 23.5 3.0 49 105-156 37-85 (125)
368 3rjo_A Endoplasmic reticulum a 20.5 5E+02 0.017 23.9 21.6 229 142-378 115-373 (419)
369 2o03_A Probable zinc uptake re 20.5 2.1E+02 0.0073 21.2 5.8 10 83-92 28-37 (131)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-39 Score=329.01 Aligned_cols=454 Identities=11% Similarity=0.005 Sum_probs=383.1
Q ss_pred cCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHH
Q 011378 8 DHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEV 87 (487)
Q Consensus 8 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 87 (487)
.+.+..+...+..++ .++...|+.++..+.+.|++++|..+|+.|.. ..|+..++..+..+|.+.|++++|..+
T Consensus 66 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 66 DGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 344444555555443 26788999999999999999999999999974 457888999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH-HC--------------CCCCCHhHHHHHHHHHHhCCCHH
Q 011378 88 LDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMS-RR--------------GVAPDIVSFSTLIGIFSRNGQLD 152 (487)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~--------------g~~p~~~~~~~li~~~~~~g~~~ 152 (487)
|+.+... .++..+++.++.+|.+.|++++|.++|+++. .. |..++..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9988543 6789999999999999999999999998532 22 33456889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-hhh--------------------------------------HHHHHHHHHhcCCHHHHHHHH
Q 011378 153 RALMYFREMKSAGLVPD-NVL--------------------------------------YTIIINGYCRNGFVLEALKMR 193 (487)
Q Consensus 153 ~a~~~~~~m~~~g~~~~-~~~--------------------------------------~~~ll~~~~~~~~~~~a~~~~ 193 (487)
+|.++|++|.+.+ |+ ... |+.++..|.+.|++++|.+++
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999998754 32 222 333356677889999999999
Q ss_pred HHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011378 194 DEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKP 273 (487)
Q Consensus 194 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 273 (487)
+++.+. +++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++..|.+.|+.++|..+|+.+.+.. +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 998765 5889999999999999999999999999998765 3477889999999999999999999999987542 44
Q ss_pred CeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011378 274 DIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIK 353 (487)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 353 (487)
+..+++.+...|.+.|++++|.++|.++.... +.+..+|+.++.+|.+.|++++|.++|+++...+ +.+..+|+.+..
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 67789999999999999999999999987632 2357799999999999999999999999998764 457889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHHh
Q 011378 354 GYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQ----GLVPD--VITYNVILTGFCR 427 (487)
Q Consensus 354 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~ 427 (487)
+|.+.|+.++|.++++++.+.. +.+..+|+.+...|.+.|++++|.++|+++.+. +..|+ ..+|..+...|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999998753 346889999999999999999999999999765 77888 7899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011378 428 QGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQR 479 (487)
Q Consensus 428 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~ 479 (487)
.|++++|..+++++.+.+ ..+..+|..+...|...|++++|.+.++++.+.
T Consensus 529 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp TTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999998764 347899999999999999999999999999863
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.6e-37 Score=312.09 Aligned_cols=444 Identities=12% Similarity=0.027 Sum_probs=382.3
Q ss_pred hhhHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCCh
Q 011378 2 VNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRC 81 (487)
Q Consensus 2 i~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 81 (487)
+..|.+.|+++.|..+++++.. ..|+..++..+..+|.+.|++++|..+|+.+... +++..+|+.++.++.+.|++
T Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 91 RHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDW 166 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhH
Confidence 5678999999999999999974 4588899999999999999999999999988543 57889999999999999999
Q ss_pred hhHHHHHHHH-HHC--------------CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHH--------
Q 011378 82 DRAKEVLDEM-LQM--------------GLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSF-------- 138 (487)
Q Consensus 82 ~~a~~~~~~m-~~~--------------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-------- 138 (487)
++|.++|+++ ... |..++..+|+.+..+|.+.|++++|.++|++|.+.+.. +...+
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhc
Confidence 9999999953 222 33456889999999999999999999999999875421 22222
Q ss_pred ------------------------------HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 011378 139 ------------------------------STLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLE 188 (487)
Q Consensus 139 ------------------------------~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 188 (487)
+.++..|.+.|++++|.++|+++.+. .++..+|+.++.+|.+.|+.++
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHH
Confidence 22355677889999999999998765 5889999999999999999999
Q ss_pred HHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 189 ALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQ 268 (487)
Q Consensus 189 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (487)
|.++++++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.+...|.+.|++++|.++|+.+.+
T Consensus 324 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 324 VLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999998765 3478899999999999999999999999998543 55789999999999999999999999999876
Q ss_pred CCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 011378 269 KSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSC 348 (487)
Q Consensus 269 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 348 (487)
.. +.+..+|+.++..|.+.|++++|.++|+++...+ +.+..+|+.+..+|.+.|++++|.++|+.+.... +.+..+|
T Consensus 402 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 478 (597)
T 2xpi_A 402 MD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLL 478 (597)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 32 2356799999999999999999999999998653 3478899999999999999999999999998753 4478899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011378 349 NTIIKGYCRSGDASKADEFLSKMVSE----GVDPD--SISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVIL 422 (487)
Q Consensus 349 ~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (487)
+.+...|.+.|+.++|.++++++.+. +..|+ ..+|..+..+|.+.|++++|.+.++++.+.+ ..+..+|..+.
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 557 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 99999999999999999999999876 77888 7899999999999999999999999987754 34789999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 011378 423 TGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLINGH 460 (487)
Q Consensus 423 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~l~~~~ 460 (487)
..|.+.|++++|...++++.+. .|+ ...|..+...|
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 9999999999999999999874 454 44555554444
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.6e-35 Score=285.45 Aligned_cols=206 Identities=21% Similarity=0.298 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCC---------HH
Q 011378 223 EADDLFNEMLERGVFPDF-YTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGE---------ME 292 (487)
Q Consensus 223 ~a~~~~~~m~~~~~~~~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~ 292 (487)
.++.+.+++.++++.+.+ ..++.+|++|++.|++++|+++|+.|.+.|++||..|||+||++|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344455555555554433 24556666666666666666666666666666666666666666655443 67
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 293 KANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMV 372 (487)
Q Consensus 293 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 372 (487)
+|.++|.+|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|+.++|.+++++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 011378 373 SEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQ 428 (487)
Q Consensus 373 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 428 (487)
+.|+.||..||++||.+|++.|++++|.+++++|++.|..|+..||++|+..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888888888753
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.6e-34 Score=283.81 Aligned_cols=207 Identities=17% Similarity=0.231 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHCCCCCCe-eehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---------H
Q 011378 257 NKALNLFDIMTQKSIKPDI-VTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGH---------V 326 (487)
Q Consensus 257 ~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~---------~ 326 (487)
..+..+.+.++++++.+.. ..++.+|++|++.|++++|.++|.+|.+.|+.||..|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455566777777776543 46899999999999999999999999999999999999999999997764 7
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 011378 327 TEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKM 406 (487)
Q Consensus 327 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 406 (487)
++|.++|++|...|+.||..||++||++|++.|+.++|.+++++|.+.|+.||..||++||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011378 407 ENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQ 463 (487)
Q Consensus 407 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~ 463 (487)
.+.|+.||..||++||.+|++.|++++|..+|++|.+.|+.|+..||+.++..+...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999998864
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=3.4e-21 Score=185.09 Aligned_cols=372 Identities=15% Similarity=0.131 Sum_probs=228.2
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHH
Q 011378 75 LCKKGRCDRAKEVLDEMLQMGLSPD-TATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDR 153 (487)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 153 (487)
+.+.|++++|.+.+..+.+. .|+ ...+..+-..+...|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 34455555555555554432 232 2333333444455555555555555544331 2345556666666666666666
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 154 ALMYFREMKSAGLVPD-NVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMD-VVTYNTILNGLCRAKMLTEADDLFNEM 231 (487)
Q Consensus 154 a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 231 (487)
|...|+++... .|+ ...|..+..++.+.|+.++|.+.+++..+.. |+ ...+..+-..+...|++++|.+.|+++
T Consensus 86 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 86 AIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666665542 233 3346666666666666666666666655432 32 334455556666667777777777666
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-Ch
Q 011378 232 LERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISP-NY 310 (487)
Q Consensus 232 ~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~ 310 (487)
.+.. +-+..+|..+...+...|++++|...|+.+.+.. +.+...|..+-..+...|++++|...+.+.... .| +.
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 6542 2245666667777777777777777776665532 112345666666777777777777777665543 23 35
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011378 311 ISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGF 390 (487)
Q Consensus 311 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 390 (487)
.++..+...+...|++++|...|+.+.... +.+..+|..+...+.+.|+.++|...++++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 667777777777777777777777776542 2345567777777888888888888887776542 34566777788888
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 011378 391 VREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLINGHVS 462 (487)
Q Consensus 391 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~l~~~~~~ 462 (487)
.+.|++++|...++++.+.. ..+..+|..+...+.+.|++++|...++++.+ +.|+ ...|..+-..+..
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHH
Confidence 88888888888887776531 22456778888888888888888888888765 3453 3455555444443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=6.2e-21 Score=183.27 Aligned_cols=323 Identities=14% Similarity=0.057 Sum_probs=155.5
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhCCCHH
Q 011378 74 GLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAP-DIVSFSTLIGIFSRNGQLD 152 (487)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 152 (487)
.+.+.|++++|...++...+.. +.+...|..+...+.+.|++++|.+.|+++.+. .| +..+|..+..++.+.|+++
T Consensus 42 ~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 118 (388)
T 1w3b_A 42 IHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDME 118 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSS
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHH
Confidence 3334444444444444333221 223344444444444444444444444444332 12 2233444444444444444
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 153 RALMYFREMKSAGLVPD-NVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEM 231 (487)
Q Consensus 153 ~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 231 (487)
+|.+.|+++.+. .|+ ...+..+-..+.+.|+.++|.+.++++.+.. +-+..+|+.+...+.+.|+++.|...|+++
T Consensus 119 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 195 (388)
T 1w3b_A 119 GAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp HHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444432 122 2233334444444444444444444444321 112344455555555555555555555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh
Q 011378 232 LERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKP-DIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNY 310 (487)
Q Consensus 232 ~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 310 (487)
.+.. +.+...+..+-..+...|++++|+..|+...+. .| +..++..+...|.+.|++++|...|+++.... +.+.
T Consensus 196 l~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 271 (388)
T 1w3b_A 196 VTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFP 271 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCH
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCH
Confidence 4432 123344555555555555555555555444332 12 23445555555555555555555555554431 1123
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011378 311 ISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGF 390 (487)
Q Consensus 311 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 390 (487)
.+|..+...+...|++++|...|+.+.... +.+..++..+...+...|+.++|...++++.+.. +.+..++..+...|
T Consensus 272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 272 DAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVL 349 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 455555666666666666666666555432 3445556666666666666666666666655421 22344566666666
Q ss_pred hccCCHHHHHHHHHHHHh
Q 011378 391 VREENMDKAFALVSKMEN 408 (487)
Q Consensus 391 ~~~~~~~~a~~~~~~m~~ 408 (487)
.+.|++++|.+.++++.+
T Consensus 350 ~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 350 QQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 666666666666666554
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.4e-20 Score=183.98 Aligned_cols=402 Identities=10% Similarity=-0.057 Sum_probs=245.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011378 33 YNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCR 112 (487)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 112 (487)
+...-..+.+.|++++|...|+.+.... |+...|..+..++.+.|++++|.+.++++.+.. +.+...|..+..++.+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 3444445555555555555555554432 455555555555555555555555555555432 1233455555555555
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHH-----------------------------------H
Q 011378 113 KENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALM-----------------------------------Y 157 (487)
Q Consensus 113 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~-----------------------------------~ 157 (487)
.|++++|...|+++.+.+ +++......++..+.+......+.+ +
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 555555555555555443 1222222233332222222222221 2
Q ss_pred HHHHHHCCCCC--------C-hhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCC--------cCChhhHHHHH
Q 011378 158 FREMKSAGLVP--------D-NVLYTIIINGYCR---NGFVLEALKMRDEMLE-----KGC--------VMDVVTYNTIL 212 (487)
Q Consensus 158 ~~~m~~~g~~~--------~-~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~li 212 (487)
...+......+ + ...+......+.. .|+.++|...+++..+ ..- +.+...|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 22222111111 1 2223333333333 7788888888888776 211 22345677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHH
Q 011378 213 NGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEME 292 (487)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 292 (487)
..+...|+++.|...|+++.+.. |+...+..+...+...|++++|...++...+.. +.+...+..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence 77888888888888888877654 336777778888888888888888887766542 224556777778888888888
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 293 KANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMV 372 (487)
Q Consensus 293 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 372 (487)
+|...+.+..... +.+...+..+...+...|++++|...++...... +.+...+..+...|.+.|+.++|...++++.
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888776543 2245677777788888888888888888776542 3345677777788888888888888887776
Q ss_pred HCC-CCCC----hhhHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011378 373 SEG-VDPD----SISYNTLINGFVR---EENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 373 ~~g-~~p~----~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 444 (487)
+.. -.++ ...+..+...|.. .|++++|...+++..+.. ..+...+..+...|.+.|++++|...+++..+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 432 1122 2367777778888 888888888887776532 234566777777888888888888888887664
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.4e-19 Score=180.23 Aligned_cols=402 Identities=13% Similarity=0.012 Sum_probs=310.1
Q ss_pred hhHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChh
Q 011378 3 NALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCD 82 (487)
Q Consensus 3 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 82 (487)
..+.+.|+++.|...++++.+.. |+..+|..+..++.+.|++++|.+.++...+.+ +.+..+|..+..++.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHH
Confidence 35678999999999999998765 899999999999999999999999999987643 234567888999999999999
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH-----------------------------------H
Q 011378 83 RAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEM-----------------------------------S 127 (487)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m-----------------------------------~ 127 (487)
+|...|+++...+ +++......++..+.+......+.+.+..+ .
T Consensus 91 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 91 DAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 9999999998775 234444444444443332222222222111 1
Q ss_pred HCCCC--------CC-HhHHHHHHHHHHh---CCCHHHHHHHHHHHHH-----CCCCC--------ChhhHHHHHHHHHh
Q 011378 128 RRGVA--------PD-IVSFSTLIGIFSR---NGQLDRALMYFREMKS-----AGLVP--------DNVLYTIIINGYCR 182 (487)
Q Consensus 128 ~~g~~--------p~-~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~~~--------~~~~~~~ll~~~~~ 182 (487)
..... |+ ...+......+.. .|+++.|..+|+++.. ..-.| +..++..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 11111 11 3333333333443 8999999999999987 32122 24578888899999
Q ss_pred cCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011378 183 NGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNL 262 (487)
Q Consensus 183 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~ 262 (487)
.|+.++|...+++..+.... ...|..+...+...|+++.|...++++.+.. +.+...+..+...|...|++++|...
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999876533 7789999999999999999999999988653 34667889999999999999999999
Q ss_pred HHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-
Q 011378 263 FDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGI- 341 (487)
Q Consensus 263 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~- 341 (487)
|+...+... .+...+..+...+.+.|++++|...+.+..... +.+...+..+...+...|++++|...++......-
T Consensus 327 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 327 FDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 998876532 256688899999999999999999999987642 23567888999999999999999999998865321
Q ss_pred CCC----hhhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 011378 342 KPT----LVSCNTIIKGYCR---SGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPD 414 (487)
Q Consensus 342 ~~~----~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 414 (487)
.++ ...+..+...+.. .|+.++|...++...+.. +.+..++..+...|.+.|++++|...+++..+. .|+
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~ 481 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ART 481 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSS
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccc
Confidence 122 3488889999999 999999999999988643 235678889999999999999999999988764 455
Q ss_pred Hh
Q 011378 415 VI 416 (487)
Q Consensus 415 ~~ 416 (487)
..
T Consensus 482 ~~ 483 (514)
T 2gw1_A 482 ME 483 (514)
T ss_dssp HH
T ss_pred cH
Confidence 43
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.84 E-value=1.3e-17 Score=163.25 Aligned_cols=301 Identities=14% Similarity=0.091 Sum_probs=199.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 011378 28 PDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLL 107 (487)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 107 (487)
.+...+..+...+.+.|++++|..+|+.+... .+.+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 35567788888888888888888888887653 22356677888888888888888888888887654 23466777888
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCH----hHHHHHH------------HHHHhCCCHHHHHHHHHHHHHCCCCCChh
Q 011378 108 VESCRKENMSEAEEIFCEMSRRGVAPDI----VSFSTLI------------GIFSRNGQLDRALMYFREMKSAGLVPDNV 171 (487)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li------------~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 171 (487)
..+.+.|++++|.+.|+++.+. .|+. ..+..+. ..+.+.|++++|...|+++.... +.+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 8888888888888888888764 3432 3444443 33777777777777777776532 23456
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----
Q 011378 172 LYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTL----- 246 (487)
Q Consensus 172 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~l----- 246 (487)
.+..+...|.+.|+.++|.+.++++.+.. +.+..+|..+...|.+.|++++|...|+++.+.. +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 67777777777777777777777766542 2345677777777777777777777777776532 1223333333
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----eeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHH
Q 011378 247 -------IHGHCKDGNMNKALNLFDIMTQKSIKPD-----IVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYG 314 (487)
Q Consensus 247 -------i~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~ 314 (487)
...|.+.|++++|...|+.+.+. .|+ ..++..+...+.+.|++++|...+.++.... +.+...|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 55666666666666666666542 233 2245566666666666666666666654331 22455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 011378 315 ILINGYCSMGHVTEAFRLWYEMVG 338 (487)
Q Consensus 315 ~li~~~~~~~~~~~a~~~~~~m~~ 338 (487)
.+..+|...|++++|...++....
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 666666666666666666666654
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.84 E-value=2.4e-17 Score=161.34 Aligned_cols=311 Identities=12% Similarity=0.046 Sum_probs=174.8
Q ss_pred CccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 011378 64 GVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIG 143 (487)
Q Consensus 64 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 143 (487)
+...|..+...+.+.|++++|..+|+++.+.. +.+...|..+...+...|++++|...|+++.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 45667788888888889999999888887642 3457788888888888888888888888887754 234667788888
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHH------------HHhcCCHHHHHHHHHHHHHcCCcCChhh
Q 011378 144 IFSRNGQLDRALMYFREMKSAGLVPDN----VLYTIIING------------YCRNGFVLEALKMRDEMLEKGCVMDVVT 207 (487)
Q Consensus 144 ~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~------------~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 207 (487)
.|.+.|++++|.+.|+++.+. .|+. ..+..+... +.+.|+.++|...++++.+.. +.+...
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 888888888888888888764 3443 455555444 444555555555555554422 123444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCee-ehHHHHHHHH
Q 011378 208 YNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIV-TYNTLIDGFC 286 (487)
Q Consensus 208 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~ 286 (487)
+..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...|...|+.++|+..|+.+.+. .|+.. .+..+ ....
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~-~~~~ 255 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHY-KQVK 255 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH-HHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHH-HHHH
Confidence 5555555555555555555555544321 223445555555555555555555555544422 22221 12111 0000
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCh
Q 011378 287 KVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPT-----LVSCNTIIKGYCRSGDA 361 (487)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~ 361 (487)
....+..+...|...|++++|...|+.+... .|+ ...+..+...+.+.|+.
T Consensus 256 ----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 256 ----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred ----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCH
Confidence 0000011144555555555555555555442 222 22444555555555555
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 362 SKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 362 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
++|...++++.+.. +.+...|..+..+|...|++++|...+++..+
T Consensus 312 ~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 312 VEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55555555554321 12344555555555555555555555555544
No 11
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=7.5e-21 Score=192.18 Aligned_cols=116 Identities=18% Similarity=0.181 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH---hCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 011378 311 ISYGILINGYCSMGHVTEAFRLWYEMV---GKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLI 387 (487)
Q Consensus 311 ~t~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 387 (487)
.|||+||++||+.|++++|..+|.+|. ..|+.||+.|||+||.+||+.|++++|.++|++|.+.|+.||..|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 345555555555555555555554443 22444555555555555555555555555555555555555555555555
Q ss_pred HHHhccCC-HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011378 388 NGFVREEN-MDKAFALVSKMENQGLVPDVITYNVILTGFC 426 (487)
Q Consensus 388 ~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (487)
+++++.|+ .++|.++|++|.+.|+.||..+|++++.++.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 55554444 2344445555554455555555554444433
No 12
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=190.91 Aligned_cols=149 Identities=15% Similarity=0.223 Sum_probs=86.5
Q ss_pred eehHHHHHHHHccCCHHHHHHHHHHHHh---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011378 276 VTYNTLIDGFCKVGEMEKANKLWADMIS---RKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTII 352 (487)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 352 (487)
.|||+||++||+.|++++|.++|.+|.+ .|+.||+.|||+||.+||+.|++++|.++|++|...|+.||.+|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3566666666666666666666655542 3566666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCCh-HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC------HhhHHHHHHHH
Q 011378 353 KGYCRSGDA-SKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPD------VITYNVILTGF 425 (487)
Q Consensus 353 ~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~ 425 (487)
.++|+.|+. +.|.++|++|.+.|+.||..+|+++++++-+. .+.+.+.++ ..+++|+ +.+.+.|.+.|
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHHH
Confidence 666666653 55666666666666666666666666544433 223333333 2344443 34444455555
Q ss_pred HhcC
Q 011378 426 CRQG 429 (487)
Q Consensus 426 ~~~g 429 (487)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5444
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.80 E-value=5.4e-16 Score=155.29 Aligned_cols=395 Identities=12% Similarity=0.037 Sum_probs=208.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011378 30 TVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVE 109 (487)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 109 (487)
...+..+-..+.+.|++++|.+.|+...... +.++.+|..+...+.+.|++++|.+.+++..+.. +.+...+..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888889999999999999999987643 2356778888899999999999999999988754 3357788888889
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCCChhhHHHHHHHHHhc
Q 011378 110 SCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSA------GLVPDNVLYTIIINGYCRN 183 (487)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~~~~~~~~ll~~~~~~ 183 (487)
+...|++++|.+.|+.+. ..|+. .+..+..+...+....|...++++... ...|+... +..+...
T Consensus 103 ~~~~g~~~~A~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~ 173 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS---LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS----LASFFGI 173 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH----HHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHh---cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH----HHHHHHh
Confidence 999999999999996442 23332 233455666666778899988888542 12233222 2222222
Q ss_pred C------------------------------------------CHHHHHHHHHHHHHcCCcCC--------hhhHHHHHH
Q 011378 184 G------------------------------------------FVLEALKMRDEMLEKGCVMD--------VVTYNTILN 213 (487)
Q Consensus 184 ~------------------------------------------~~~~a~~~~~~m~~~g~~~~--------~~~~~~li~ 213 (487)
. ++++|..+++++.+.. |+ ..+|..+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGI 251 (537)
T ss_dssp SCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHH
Confidence 2 3444444444444321 11 112333334
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHH
Q 011378 214 GLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEK 293 (487)
Q Consensus 214 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 293 (487)
.+...|+++.|...|++..+. .|+...+..+...+...|++++|...|+...+.. +.+..++..+...+...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 444555555555555555443 2334445555555555555555555555444321 1123344455555555555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 294 ANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS 373 (487)
Q Consensus 294 a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (487)
|...+.+..... +.+...+..+...+...|++++|...++...... +.+...+..+-..|...|+.++|...+++..+
T Consensus 329 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555555444321 1123444455555555555555555555544332 22333444455555555555555555555433
Q ss_pred CC-----CCCChhhHHHHHHHHhcc----------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 011378 374 EG-----VDPDSISYNTLINGFVRE----------ENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELIL 438 (487)
Q Consensus 374 ~g-----~~p~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 438 (487)
.. .......+..+...|.+. |++++|...+++..+.. ..+...|..+...|.+.|++++|...|
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 21 000111122222333444 55555555555444321 122344455555555555555555555
Q ss_pred HHHHH
Q 011378 439 WRMIE 443 (487)
Q Consensus 439 ~~m~~ 443 (487)
++..+
T Consensus 486 ~~al~ 490 (537)
T 3fp2_A 486 EDSAI 490 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.79 E-value=1.3e-15 Score=152.58 Aligned_cols=391 Identities=12% Similarity=0.032 Sum_probs=259.2
Q ss_pred hHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhh
Q 011378 4 ALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDR 83 (487)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 83 (487)
.+.+.|+++.|...+++..+.. +.+..+|..+..++.+.|++++|.+.++.....+ +.+..+|..+...+.+.|++++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 4667888888888888876643 2366778888888888888888888888876542 2245667777778888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC------CCCCCHhHH-------------------
Q 011378 84 AKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRR------GVAPDIVSF------------------- 138 (487)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~------------------- 138 (487)
|.+.|+.+.. .|+.. +..+..+...+....|...++++... ...|+....
T Consensus 112 A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 8888863322 23222 22233444455566778888777442 112222211
Q ss_pred -----------HHHHHHHHhC--------CCHHHHHHHHHHHHHCCCCCC--------hhhHHHHHHHHHhcCCHHHHHH
Q 011378 139 -----------STLIGIFSRN--------GQLDRALMYFREMKSAGLVPD--------NVLYTIIINGYCRNGFVLEALK 191 (487)
Q Consensus 139 -----------~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~--------~~~~~~ll~~~~~~~~~~~a~~ 191 (487)
..+...+... |++++|..+++++.+.. |+ ..++..+-..+...|+.++|..
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 1122222211 36777888888776543 33 2245556667777888888888
Q ss_pred HHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011378 192 MRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSI 271 (487)
Q Consensus 192 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 271 (487)
.+++..+.. |+...|..+...+...|+++.|.+.|++..+.. +.+..++..+...+...|++++|...|+...+..
T Consensus 265 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 340 (537)
T 3fp2_A 265 LLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN- 340 (537)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence 888877643 456677778888888888888888888877653 3356778888888888888888888888776543
Q ss_pred CCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCChh
Q 011378 272 KPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKG-----IKPTLV 346 (487)
Q Consensus 272 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~ 346 (487)
+.+...+..+...+...|++++|...+.+..... +.+...+..+...+...|++++|...++...... ......
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 1234577778888888888888888888776542 2345677788888888888888888888765432 111222
Q ss_pred hHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 011378 347 SCNTIIKGYCRS----------GDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQ 409 (487)
Q Consensus 347 ~~~~li~~~~~~----------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 409 (487)
.+...-..+.+. |++++|...+++..+.. +.+...+..+...|.+.|++++|.+.+++..+.
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 233444566666 88888888888877642 234567778888888888888888888877653
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=7e-16 Score=145.00 Aligned_cols=346 Identities=12% Similarity=0.110 Sum_probs=148.4
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHH
Q 011378 6 CKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAK 85 (487)
Q Consensus 6 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 85 (487)
-+.|++++|.++++++.. | .+|..+..++.+.|++++|.+.|.. .+|..+|..+++++.+.|++++|.
T Consensus 14 ~~~~~ld~A~~fae~~~~----~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE----P--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC----h--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 456778899999888842 3 4788999999999999999988864 257778889999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 011378 86 EVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAG 165 (487)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 165 (487)
++++...+. .++..+.+.++.+|++.|+++++.++++ .|+..+|..+...|...|.++.|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 977765553 4567888889999999999999888875 377778999999999999999999999876
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011378 166 LVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTT 245 (487)
Q Consensus 166 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~ 245 (487)
..|..+.+++.+.|++++|.+.+.+. .++.+|..++.+|...|+++.|...... +..++.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 37889999999999999999888877 3678899999999999999998555443 2233444557
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHcc--CCHHHHHHHHHHHHhCCCCC------ChhhHHHHH
Q 011378 246 LIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKV--GEMEKANKLWADMISRKISP------NYISYGILI 317 (487)
Q Consensus 246 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p------~~~t~~~li 317 (487)
++..|.+.|++++|..+++...... +-....|+-|--.|++- +++.+..+.|.. +-.++| +...|.-+.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHH
Confidence 8888999999999998888665332 23445666666666665 234444444431 112222 345677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHH
Q 011378 318 NGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMD 397 (487)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 397 (487)
-.|...++++.|.. .|..+ +|+..--..+.+...+..+.+--.+.+.... +..|. ..|-|+.++...=+..
T Consensus 290 ~ly~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~--~l~~ll~~l~~~ld~~ 360 (449)
T 1b89_A 290 FLYDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPL--LLNDLLMVLSPRLDHT 360 (449)
T ss_dssp HHHHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGG--GHHHHHHHHGGGCCHH
T ss_pred HHHHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHH--HHHHHHHHHHhccCcH
Confidence 77777777777766 33332 2232223334444455555554444444433 12233 2555555555555555
Q ss_pred HHHHHHH
Q 011378 398 KAFALVS 404 (487)
Q Consensus 398 ~a~~~~~ 404 (487)
++..+|+
T Consensus 361 r~v~~~~ 367 (449)
T 1b89_A 361 RAVNYFS 367 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=5.2e-16 Score=145.87 Aligned_cols=239 Identities=13% Similarity=0.106 Sum_probs=82.4
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHH
Q 011378 42 REGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEE 121 (487)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 121 (487)
+.|++++|.++++.+ +++.+|..+..++.+.|++++|.+.|.+ .+|..+|..++..+...|++++|.+
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 457788888877766 3445788888888888888888888764 2566777778888878888888888
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011378 122 IFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGC 201 (487)
Q Consensus 122 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 201 (487)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+.+.|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66655553 3445667778888888888887777664 266667777777777888888877777754
Q ss_pred cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHH
Q 011378 202 VMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTL 281 (487)
Q Consensus 202 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 281 (487)
..|..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +..+..-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 47777777777778887777777776 2567777777777777777777443322 11222224456
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011378 282 IDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCS 322 (487)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 322 (487)
+..|.+.|++++|..+++...... +.....|+-|--+|++
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 667777777777777776654332 2334455555555544
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=4.5e-13 Score=133.95 Aligned_cols=413 Identities=10% Similarity=0.100 Sum_probs=234.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011378 29 DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLV 108 (487)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 108 (487)
|...|..++. +.+.|+++.|..+|+.+.+. .+-+...|...+..+.+.|+++.|.++|++.... .|+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 6678888888 47899999999999998764 2334567999999999999999999999998865 478777777765
Q ss_pred H-HHccCChhHHHH----HHHHHHH-CCCCC-CHhHHHHHHHHHHh---------CCCHHHHHHHHHHHHHCCCCCCh--
Q 011378 109 E-SCRKENMSEAEE----IFCEMSR-RGVAP-DIVSFSTLIGIFSR---------NGQLDRALMYFREMKSAGLVPDN-- 170 (487)
Q Consensus 109 ~-~~~~~~~~~a~~----~~~~m~~-~g~~p-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~~~~-- 170 (487)
. ....|+.+.|.+ +|+...+ .|..| +...|...+....+ .|+++.|..+|+...+. |+.
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~ 164 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI 164 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence 3 335577777665 6665543 35544 45667777766554 68899999999988762 332
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHH------HcC---CCCC-
Q 011378 171 -VLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEML------ERG---VFPD- 239 (487)
Q Consensus 171 -~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~------~~~---~~~~- 239 (487)
..|......--..|. .+...++. .+.+++..|..++++.. +.. ++|+
T Consensus 165 ~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 233322221100110 00011110 01223344444443321 111 2222
Q ss_pred -------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCeeehHHHHHHHHc-------cCCHH-----
Q 011378 240 -------FYTFTTLIHGHCKD----GNM----NKALNLFDIMTQKSIKPDIVTYNTLIDGFCK-------VGEME----- 292 (487)
Q Consensus 240 -------~~t~~~li~~~~~~----g~~----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~----- 292 (487)
...|...+...... ++. +.+..+|+..... .+-+...|..+...+.+ .|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 13344433322221 121 2455555554432 11233445555555443 46655
Q ss_pred --HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChHHHHHHH
Q 011378 293 --KANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTL--VSCNTIIKGYCRSGDASKADEFL 368 (487)
Q Consensus 293 --~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~ 368 (487)
+|..++.+....-.+.+...|..+...+.+.|++++|..+|+..... .|+. ..|..+...+.+.|+.++|..+|
T Consensus 302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 66666666553222224556666666666667777777777666653 3432 35666666666667777777777
Q ss_pred HHHHHCCCCCC-hhhHHHHHH-HHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011378 369 SKMVSEGVDPD-SISYNTLIN-GFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKG 445 (487)
Q Consensus 369 ~~m~~~g~~p~-~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 445 (487)
+...+. .|+ ...|..... .+...|+.++|..+|++..+. .| +...|..++..+.+.|+.++|..+|++....+
T Consensus 380 ~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 380 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 666543 222 111211111 122466777777777655442 23 35566666666677777777777777766542
Q ss_pred -CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 446 -LNPD--RSTYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 446 -~~p~--~~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
..|+ ...|...+......|+.+.+.++..++.
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222 3366666666666677777776666654
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=3.5e-13 Score=134.74 Aligned_cols=381 Identities=9% Similarity=0.044 Sum_probs=254.5
Q ss_pred CccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 011378 64 GVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIG 143 (487)
Q Consensus 64 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 143 (487)
+...|..++. +.+.|+++.|..+|+++.+. .+-+...|..++..+.+.|+++.|.++|++..+. .|+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 5567888887 47788999999999998764 2345667888888888899999999999988765 367776766664
Q ss_pred H-HHhCCCHHHHHH----HHHHHHH-CCCCCC-hhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCcCCh--
Q 011378 144 I-FSRNGQLDRALM----YFREMKS-AGLVPD-NVLYTIIINGYCR---------NGFVLEALKMRDEMLEKGCVMDV-- 205 (487)
Q Consensus 144 ~-~~~~g~~~~a~~----~~~~m~~-~g~~~~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~m~~~g~~~~~-- 205 (487)
. ....|+.+.|.+ +|+.... .|..|+ ...|...+....+ .|+.+.|..++++..+. |+.
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~ 164 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI 164 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence 3 345677666554 6665543 455543 4566666665544 56777777777776652 221
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH------HCC---CCCCe
Q 011378 206 -VTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMT------QKS---IKPDI 275 (487)
Q Consensus 206 -~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~------~~~---~~~~~ 275 (487)
..|..........+ ..+...++. .+.++++.|..+++... +.. ++|+.
T Consensus 165 ~~~~~~~~~~e~~~~--------------------~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGIN--------------------IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHC--------------------HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhc--------------------hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 12211111000000 011111111 12345667776665532 121 34442
Q ss_pred --------eehHHHHHHHHcc----CCH----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------cCCHH-----
Q 011378 276 --------VTYNTLIDGFCKV----GEM----EKANKLWADMISRKISPNYISYGILINGYCS-------MGHVT----- 327 (487)
Q Consensus 276 --------~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~-------~~~~~----- 327 (487)
..|...+...... ++. +.+..+|++.... .+-+...|..+...+.. .|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 3555555443322 233 4677788877654 23356778777777765 78887
Q ss_pred --HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhccCCHHHHHHHH
Q 011378 328 --EAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDS--ISYNTLINGFVREENMDKAFALV 403 (487)
Q Consensus 328 --~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~ 403 (487)
+|..+++.-...-.+.+...|..+...+.+.|+.++|..++++..+. .|+. ..|..+...+.+.|++++|.++|
T Consensus 302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 89999998875323445778999999999999999999999999874 5642 47888888888999999999999
Q ss_pred HHHHhCCCCCC-HhhHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011378 404 SKMENQGLVPD-VITYNVILT-GFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQNNLKEAFRFHDEMLQRG 480 (487)
Q Consensus 404 ~~m~~~g~~p~-~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~g 480 (487)
++..+. .|+ ...|-.... .+...|+.++|..+|++..+. .| +...|..++..+.+.|+.++|..++++.+..+
T Consensus 380 ~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 380 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 988764 232 222222222 234689999999999998764 35 57788999999999999999999999998763
No 19
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.70 E-value=3.7e-13 Score=126.85 Aligned_cols=326 Identities=12% Similarity=0.053 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011378 101 ATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGY 180 (487)
Q Consensus 101 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 180 (487)
..+..+-..+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...|..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 344445555555666666666666555432 1234455555555566666666666665554431 11234455555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCc--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011378 181 CRNGFVLEALKMRDEMLEKGCV--MDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNK 258 (487)
Q Consensus 181 ~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~ 258 (487)
.+.|+.++|...+++..+.... .+...+..+...+ . ...+..+...+...|++++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHHH
Confidence 5555555555555555432110 0111222220000 0 0001112345555666666
Q ss_pred HHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011378 259 ALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVG 338 (487)
Q Consensus 259 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 338 (487)
|+..++.+.+.. +.+...+..+...+...|++++|...+.+..... +.+..++..+...+...|++++|...++...+
T Consensus 139 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 139 AITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666665554321 1233455555566666666666666666554431 22445556666666666666666666665554
Q ss_pred CCCCCChhhHH------------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHhccCCHHHHHH
Q 011378 339 KGIKPTLVSCN------------TIIKGYCRSGDASKADEFLSKMVSEGVDPDS-----ISYNTLINGFVREENMDKAFA 401 (487)
Q Consensus 339 ~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~~~~~~a~~ 401 (487)
.. +.+...+. .+...+.+.|+.++|...+++..+.. |+. ..+..+...|.+.|++++|..
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 32 11122221 22445667777777777777766533 322 224445667777788888887
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 011378 402 LVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLING 459 (487)
Q Consensus 402 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~l~~~ 459 (487)
.+++..+.. ..+...|..+...+.+.|++++|...+++..+. .|+ ...+..+..+
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 777776531 225667777777777888888888777777653 344 3334443333
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=4.9e-12 Score=125.07 Aligned_cols=338 Identities=13% Similarity=0.079 Sum_probs=179.6
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----CC
Q 011378 78 KGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCR----KENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSR----NG 149 (487)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g 149 (487)
.++++.|...|....+.| +...+..|-..|.. .++.++|.+.|++..+.| +...+..+-..|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 455555555555554432 23344444444444 555555555555555543 33344444444544 45
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHh----cCCH
Q 011378 150 QLDRALMYFREMKSAGLVPDNVLYTIIINGYCR----NGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCR----AKML 221 (487)
Q Consensus 150 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~ 221 (487)
++++|...|++....| +...+..|-..|.. .++.++|.+.+++..+.| +...+..+-..|.+ .++.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 5555655555555443 23344444444444 455556665555555543 34445555555554 5566
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHc----cCCHHH
Q 011378 222 TEADDLFNEMLERGVFPDFYTFTTLIHGHCK----DGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCK----VGEMEK 293 (487)
Q Consensus 222 ~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~ 293 (487)
+.|.+.|++..+.| +...+..+-..|.. .++.++|...|+...+.+ +...+..+-..|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 66666666555543 34444445445543 555666666665554432 22233344444444 556666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---ChHHHH
Q 011378 294 ANKLWADMISRKISPNYISYGILINGYCSM-----GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSG---DASKAD 365 (487)
Q Consensus 294 a~~~~~~m~~~~~~p~~~t~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~a~ 365 (487)
|...|+.....+ +...+..|-..|... ++.++|...++.....| +...+..+-..|...| +.++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 666666555432 333444555555554 56666666666665543 2334444444454434 566666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChHHHHHH
Q 011378 366 EFLSKMVSEGVDPDSISYNTLINGFVR----EENMDKAFALVSKMENQGLVPDVITYNVILTGFCR----QGRMHDSELI 437 (487)
Q Consensus 366 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~ 437 (487)
+.+++..+.| +...+..|-..|.. .++.++|...+++..+.| +...+..|-..|.+ .++.++|...
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 6666666543 34455555555555 566667776666666544 34455555555555 6667777776
Q ss_pred HHHHHHcC
Q 011378 438 LWRMIEKG 445 (487)
Q Consensus 438 ~~~m~~~g 445 (487)
|++..+.|
T Consensus 426 ~~~A~~~~ 433 (490)
T 2xm6_A 426 FDTASTND 433 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHCC
Confidence 66666554
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=6.8e-12 Score=124.07 Aligned_cols=364 Identities=14% Similarity=0.060 Sum_probs=285.8
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHh----cCChhhHH
Q 011378 14 AKMFLCEMEQKGVYPDTVTYNTLINAYCR----EGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCK----KGRCDRAK 85 (487)
Q Consensus 14 a~~~~~~~~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~ 85 (487)
+...+....+.| +...+..+-..|.. .++++.|..+|+...+.| ++..+..+-..+.. .+++++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 344455544443 66777778888887 899999999999887764 45567777777777 88999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----CCCHHHHHHH
Q 011378 86 EVLDEMLQMGLSPDTATYNTLLVESCR----KENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSR----NGQLDRALMY 157 (487)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~ 157 (487)
+.|.+..+.| +...+..|-..|.. .++.++|.+.|++..+.| +...+..+-..|.. .++.++|.+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999988765 55566667677776 789999999999988876 45667777777877 7899999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHh----cCCHHHHHHHHH
Q 011378 158 FREMKSAGLVPDNVLYTIIINGYCR----NGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCR----AKMLTEADDLFN 229 (487)
Q Consensus 158 ~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~ 229 (487)
|++..+.| +...+..|-..|.+ .++.++|.+.+++..+.| +...+..+-..|.. .++++.|.+.|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99988764 56677788888887 789999999999888765 45677777777776 789999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHcc-----CCHHHHHHHHHH
Q 011378 230 EMLERGVFPDFYTFTTLIHGHCK----DGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKV-----GEMEKANKLWAD 300 (487)
Q Consensus 230 ~m~~~~~~~~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~ 300 (487)
+..+.| +...+..+-..|.. .++.++|+..|+...+.+ +...+..|-..|... ++.++|...|..
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 988764 45566667677777 889999999999887654 344666677777776 899999999998
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 011378 301 MISRKISPNYISYGILINGYCSMG---HVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCR----SGDASKADEFLSKMVS 373 (487)
Q Consensus 301 m~~~~~~p~~~t~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~ 373 (487)
..+.+ +...+..|-..|...| +.++|...|+.....| +...+..|-..|.. .++.++|...+++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 87764 4456677777777766 7889999999888764 56777778888887 7899999999999888
Q ss_pred CCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCC
Q 011378 374 EGVDPDSISYNTLINGFVR----EENMDKAFALVSKMENQG 410 (487)
Q Consensus 374 ~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g 410 (487)
.| +...+..|-..|.+ .++.++|...+++..+.+
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 66 45667777788877 799999999999887765
No 22
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.69 E-value=2.6e-13 Score=127.92 Aligned_cols=311 Identities=12% Similarity=0.053 Sum_probs=156.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011378 30 TVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVE 109 (487)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 109 (487)
+..+..+...+.+.|++++|...|+...... +.+..+|..+...+.+.|++++|...+++..+.. +-+...|..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3445566666677777777777777665431 1234556666666666777777777777665532 1244556666666
Q ss_pred HHccCChhHHHHHHHHHHHCCCCC----CHhHHHHH------------HHHHHhCCCHHHHHHHHHHHHHCCCCCChhhH
Q 011378 110 SCRKENMSEAEEIFCEMSRRGVAP----DIVSFSTL------------IGIFSRNGQLDRALMYFREMKSAGLVPDNVLY 173 (487)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 173 (487)
+...|++++|...+++..+. .| +...+..+ ...+...|++++|.+.+++..+.. +.+...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 66667777777776666543 23 22222222 344555555555555555554422 1233444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011378 174 TIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKD 253 (487)
Q Consensus 174 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~ 253 (487)
..+...+.+.|+.++|...+++..+.. +.+...|..+...+...|+++.|...|++..+.. +.+...+..+...
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~---- 231 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV---- 231 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH----
Confidence 455555555555555555555544332 2233444555555555555555555555544321 1111111111000
Q ss_pred CCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh-----hhHHHHHHHHHhcCCHHH
Q 011378 254 GNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNY-----ISYGILINGYCSMGHVTE 328 (487)
Q Consensus 254 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~t~~~li~~~~~~~~~~~ 328 (487)
. .......+...+.+.|++++|...+.+..... |+. ..+..+...+...|++++
T Consensus 232 -------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 232 -------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp -------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHH
Confidence 0 00000112334555555555555555554432 221 123334555566666666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 329 AFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS 373 (487)
Q Consensus 329 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (487)
|...++...... +.+..++..+-..|...|+.++|...+++..+
T Consensus 291 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 291 AIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666555431 22445555666666666666666666666554
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.69 E-value=9.1e-14 Score=129.59 Aligned_cols=280 Identities=11% Similarity=-0.008 Sum_probs=130.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011378 173 YTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCK 252 (487)
Q Consensus 173 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~ 252 (487)
+..+...+...|+.++|.++++++.+.. +.+...+..+...+.+.|++++|..+++++.+.. +.+...+..+...+..
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 3333333444444444444444433321 1122233333444444444444444444444321 1123344444444444
Q ss_pred cC-CHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011378 253 DG-NMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFR 331 (487)
Q Consensus 253 ~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~ 331 (487)
.| +.++|...|+...+.. +.+...|..+...+...|++++|...+.+...... .+...+..+...|...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLAER 180 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHHHH
Confidence 44 4444444444443221 11223344444445555555555555544433211 122334445555555555555555
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCCChhhHHHHHHHHhccCCHHHHHHHH
Q 011378 332 LWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEG--------VDPDSISYNTLINGFVREENMDKAFALV 403 (487)
Q Consensus 332 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~~~~~~a~~~~ 403 (487)
.++...... +.+...+..+...+...|+.++|...+++..+.. .+.+..++..+...|...|++++|...+
T Consensus 181 ~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 181 FFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 555554332 2234455555555555566666655555554321 1222345666666666666666666666
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 011378 404 SKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGH 460 (487)
Q Consensus 404 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~l~~~~ 460 (487)
++..+.. ..+...|..+...+.+.|++++|...+++..+ +.| +...+..+..++
T Consensus 260 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 260 RQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHH
T ss_pred HHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHH
Confidence 6554431 22345566666666666666666666666543 234 334444444444
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.69 E-value=1e-13 Score=129.27 Aligned_cols=267 Identities=10% Similarity=-0.027 Sum_probs=130.2
Q ss_pred CccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 011378 64 GVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIG 143 (487)
Q Consensus 64 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 143 (487)
+...+..+...+...|++++|.++|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33344444444444555555555555544321 1122333334444445555555555555554421 113334455555
Q ss_pred HHHhCC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHH
Q 011378 144 IFSRNG-QLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLT 222 (487)
Q Consensus 144 ~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 222 (487)
.+...| ++++|...|++..+.. +.+...|..+...+...|+.++|...+++..+..- .+...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHH
Confidence 555555 5666666665554432 11234455555555555555555555555544321 12334445556666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCeeehHHHHHHHHccCCHHHH
Q 011378 223 EADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKS--------IKPDIVTYNTLIDGFCKVGEMEKA 294 (487)
Q Consensus 223 ~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~~~a 294 (487)
.|.+.+++..+.. +.+...+..+...+...|++++|...++...+.. .+.+..++..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 6666666655432 2345556666666666666666666665544311 011233445555555555555555
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 295 NKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEM 336 (487)
Q Consensus 295 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 336 (487)
...+++..... +.+...+..+...+...|++++|...++..
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 55555444321 113344444455555555555555555444
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=1e-11 Score=130.19 Aligned_cols=413 Identities=11% Similarity=0.085 Sum_probs=273.3
Q ss_pred hhhHHhcCChhhHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcC
Q 011378 2 VNALCKDHKIDSAKMFLCEMEQKGV--YPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKG 79 (487)
Q Consensus 2 i~~~~~~~~~~~a~~~~~~~~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 79 (487)
++.|...|.+..|.++++++...+- .-+....+.++.+..+. +.....+..+.... ....-+-..+...|
T Consensus 992 vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNE 1063 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCC
Confidence 4556666777777777776653321 11234455555555555 44555544444331 11223445556677
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHH
Q 011378 80 RCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFR 159 (487)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 159 (487)
.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+-.++.+.|++++|.+.|.
T Consensus 1064 lyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7777777777642 12222233332 5566777777776441 35568888888888888998888886
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011378 160 EMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPD 239 (487)
Q Consensus 160 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 239 (487)
+. -|...|..++..+.+.|+.+++.+.+..-++.. +++...+.+..+|++.++++....+.+ .++
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n 1194 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPN 1194 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCC
Confidence 53 456677888888888899988888887666544 333334458888888888876554431 346
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011378 240 FYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILING 319 (487)
Q Consensus 240 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 319 (487)
...|..+-..|...|++++|...|... ..|..+...|.+.|++++|.+.+++. -+..+|.-+-.+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 667777888888899999999888864 38889999999999999999988765 366888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc--cCCHH
Q 011378 320 YCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVR--EENMD 397 (487)
Q Consensus 320 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~~ 397 (487)
|...|++..|...... +..+...+..++..|.+.|.+++|..+++.-.... .-....|.-|-..|++ .+++.
T Consensus 1260 cve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHH
Confidence 8888888888775542 45566777789999999999999999997665332 2233355555555554 34555
Q ss_pred HHHHHHHHHHhCCCCC------CHhhHHHHHHHHHhcCChHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHH
Q 011378 398 KAFALVSKMENQGLVP------DVITYNVILTGFCRQGRMHDSELILWRMIE-----------KGLNPDRSTYTTLINGH 460 (487)
Q Consensus 398 ~a~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----------~g~~p~~~ty~~l~~~~ 460 (487)
++.++|.. ..++.| +...|.-++-.|.+.|+++.|....-+-.. ..-..+...|...+.-|
T Consensus 1334 Ehlk~f~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fy 1411 (1630)
T 1xi4_A 1334 EHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFY 1411 (1630)
T ss_pred HHHHHHHH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHH
Confidence 55555542 122333 456799999999999999988632211100 01135677777778777
Q ss_pred HhcC---------------CHHHHHHHHH
Q 011378 461 VSQN---------------NLKEAFRFHD 474 (487)
Q Consensus 461 ~~~~---------------~~~~a~~~~~ 474 (487)
.... +++.+.+++.
T Consensus 1412 l~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1412 LEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 7776 7777766665
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.67 E-value=2.3e-14 Score=135.98 Aligned_cols=231 Identities=7% Similarity=-0.070 Sum_probs=116.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011378 171 VLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGH 250 (487)
Q Consensus 171 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~ 250 (487)
..+..+-..+.+.|+.++|...+++..+.. +.+...|..+...+.+.|+++.|.+.|+++.+.. +.+..++..+...|
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345556666666666666666666665542 2344566666666777777777777777666543 23556666777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCeeehHH---------------HHHHHHccCCHHHHHHHHHHHHhCCCC-CChhhHH
Q 011378 251 CKDGNMNKALNLFDIMTQKSIKPDIVTYNT---------------LIDGFCKVGEMEKANKLWADMISRKIS-PNYISYG 314 (487)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---------------li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~t~~ 314 (487)
...|+.++|...|+.+.+..... ...+.. .+..+...|++++|...+.++...... ++..++.
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 77777777777776665532111 111110 122222445555555555544432211 1234444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 011378 315 ILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREE 394 (487)
Q Consensus 315 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 394 (487)
.+...+...|++++|...++...... +.+..++..+...|...|+.++|...+++..+.. +.+...+..+...|.+.|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCC
Confidence 55555555555555555555444321 2223344444444444555555555444444321 112334444444444444
Q ss_pred CHHHHHHHHHHH
Q 011378 395 NMDKAFALVSKM 406 (487)
Q Consensus 395 ~~~~a~~~~~~m 406 (487)
++++|...+++.
T Consensus 300 ~~~~A~~~~~~a 311 (368)
T 1fch_A 300 AHREAVEHFLEA 311 (368)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444444444443
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.66 E-value=4.1e-14 Score=134.32 Aligned_cols=302 Identities=13% Similarity=0.026 Sum_probs=166.0
Q ss_pred hcCChhHHHH-HHHHHhhCC-CCC--CccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 011378 42 REGFLEEAFQ-LMNSMSGKG-LKP--GVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMS 117 (487)
Q Consensus 42 ~~~~~~~a~~-~~~~m~~~~-~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 117 (487)
-.|+++.|.+ .++...... -.| +...|..+-..+.+.|++++|...|+++.+.. +.+...|..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777776 666433211 111 34567777778888888888888888887653 335667777777888888888
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 118 EAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNV-LYTIIINGYCRNGFVLEALKMRDEM 196 (487)
Q Consensus 118 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m 196 (487)
+|.+.|++..+.. +.+..++..+...+.+.|++++|...++++.... |+.. .+..+-.. ...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~------- 178 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AGG------- 178 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hhh-------
Confidence 8888888877653 2356677778888888888888888888877643 2211 11111000 000
Q ss_pred HHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCe
Q 011378 197 LEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVF-PDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDI 275 (487)
Q Consensus 197 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 275 (487)
..+ ...+. .+..+...|+++.|...|+++.+..-. ++..++..+...|...|++++|+..|+...+.. +.+.
T Consensus 179 ----~~~-~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 179 ----AGL-GPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ----hcc-cHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 000 00001 112222555566666666555543211 135555556666666666666666665544331 1123
Q ss_pred eehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----------CCCh
Q 011378 276 VTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGI----------KPTL 345 (487)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~----------~~~~ 345 (487)
.++..+...+.+.|++++|...|.+..... +.+...+..+...|...|++++|...|+......- ....
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 455556666666666666666666554431 22345566666666666666666666665543210 0114
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHH
Q 011378 346 VSCNTIIKGYCRSGDASKADEFLS 369 (487)
Q Consensus 346 ~~~~~li~~~~~~~~~~~a~~~~~ 369 (487)
.+|..+..+|...|+.++|..+++
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHH
Confidence 566667777777777777666655
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.62 E-value=1.5e-13 Score=130.33 Aligned_cols=262 Identities=7% Similarity=-0.088 Sum_probs=137.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011378 172 LYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHC 251 (487)
Q Consensus 172 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~ 251 (487)
.|..+...+.+.|+.++|...+++..+.. +.+...|..+...|.+.|+++.|...|++..+.. +.+..++..+...|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34455555555555555555555554432 2234456666666666666666666666665532 224556666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCC---------CCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHH
Q 011378 252 KDGNMNKALNLFDIMTQKSIK---------PDIVTYNTLIDGFCKVGEMEKANKLWADMISRKIS-PNYISYGILINGYC 321 (487)
Q Consensus 252 ~~g~~~~a~~~~~~m~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~t~~~li~~~~ 321 (487)
..|++++|+..|+.+.+.... ....++..+...+.+.|++++|...+.+....... ++..++..+...|.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 666666666666655442100 01223334456666677777777777666554211 14556666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHH
Q 011378 322 SMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFA 401 (487)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 401 (487)
..|++++|...++...... +.+..+|..+..+|...|+.++|...+++..+.. +.+..++..+...|.+.|++++|..
T Consensus 225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 6677777776666665432 2345556666666666666666666666655432 1124455556666666666666666
Q ss_pred HHHHHHhCC---CCC--------CHhhHHHHHHHHHhcCChHHHHHH
Q 011378 402 LVSKMENQG---LVP--------DVITYNVILTGFCRQGRMHDSELI 437 (487)
Q Consensus 402 ~~~~m~~~g---~~p--------~~~~~~~li~~~~~~g~~~~a~~~ 437 (487)
.+++..+.. ..| +...|..+...+...|+.+.+..+
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 665543210 000 134455555555555555555443
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.61 E-value=3.7e-11 Score=126.12 Aligned_cols=379 Identities=13% Similarity=0.157 Sum_probs=245.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011378 32 TYNTLINAYCREGFLEEAFQLMNSMSGKG--LKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVE 109 (487)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 109 (487)
-....+++|+..|.+.+++++++...-.+ +.-+...-+.++.+..+. +.....++.++... .+ ...+-..
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----~d---~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----YD---APDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh----cc---HHHHHHH
Confidence 34566777777788888888887766321 111223344455555555 55666666665542 11 2224455
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-hCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 011378 110 SCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFS-RNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLE 188 (487)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 188 (487)
+...|.+++|..+|++.. .+...+..+. ..+++++|.++.++. -+..+|..+-.++-+.|++++
T Consensus 1059 ai~lglyEEAf~IYkKa~---------~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD---------VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC---------CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 666788888888887742 1122223333 667788888777754 235677788888888888888
Q ss_pred HHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 189 ALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQ 268 (487)
Q Consensus 189 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (487)
|.+.+.+- -|...|..++.+|.+.|++++|.+.+...++.. +++...+.+..+|++.+++++...+. +
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 88777542 456677778888888888888888887665543 33333334777788887777544332 1
Q ss_pred CCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 011378 269 KSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSC 348 (487)
Q Consensus 269 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 348 (487)
.++...|..+-..|-..|++++|...|... ..|..+..+|.+.|++++|.+.++.- .+..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 234455666777778888888888888753 47788888888888888888877654 355777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHH-
Q 011378 349 NTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFC- 426 (487)
Q Consensus 349 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~- 426 (487)
.-+-.+|...|++..|..+... +..+...+..++..|-+.|.+++|..+++.-- |+.| ....|+-+-..++
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL--~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccChhHhHHHHHHHHHHHh
Confidence 7777788888887777666543 33455667788888999999999999886543 2222 2234444444444
Q ss_pred -hcCChHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCCHHHHHHH
Q 011378 427 -RQGRMHDSELILWRMIEKGLNP------DRSTYTTLINGHVSQNNLKEAFRF 472 (487)
Q Consensus 427 -~~g~~~~a~~~~~~m~~~g~~p------~~~ty~~l~~~~~~~~~~~~a~~~ 472 (487)
+-+++-++.++|..= ..+.| +...|..++..|.+.|+++.|..+
T Consensus 1327 y~peklmEhlk~f~~r--ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred CCHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 455555555555531 22222 456899999999999999999743
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.61 E-value=2.1e-13 Score=124.79 Aligned_cols=249 Identities=6% Similarity=-0.009 Sum_probs=151.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011378 179 GYCRNGFVLEALKMRDEMLEKGCVMDV--VTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNM 256 (487)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~ 256 (487)
-....|....|....+.... ..|+. ...-.+..+|...|+++.|...++. .-.|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 34455667776666554422 22322 2334455677777777777665543 1345566666677777777777
Q ss_pred HHHHHHHHHHHHCCCCCCee-ehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 257 NKALNLFDIMTQKSIKPDIV-TYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYE 335 (487)
Q Consensus 257 ~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 335 (487)
++|+..++.+...+..|+.. .+..+-..+...|++++|.+.++. +.+...+..+...+.+.|++++|...++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777776665555433 334444666777777777777754 34566667777777777777777777777
Q ss_pred HHhCCCCCChhhH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 011378 336 MVGKGIKPTLVSC---NTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLV 412 (487)
Q Consensus 336 m~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 412 (487)
+.... |+.... ..++..+...|+.++|..+++++.+. .+.+...++.+..++.+.|++++|...+++..+.. .
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 76542 443211 12233334446777777777777654 33456667777777777777777777777655431 1
Q ss_pred CCHhhHHHHHHHHHhcCChHH-HHHHHHHHHH
Q 011378 413 PDVITYNVILTGFCRQGRMHD-SELILWRMIE 443 (487)
Q Consensus 413 p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~ 443 (487)
-+..++..++..+...|+.++ +..+++++.+
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 245566667777777777655 4566666654
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.60 E-value=1.9e-13 Score=129.68 Aligned_cols=265 Identities=9% Similarity=-0.028 Sum_probs=212.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHH
Q 011378 204 DVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLID 283 (487)
Q Consensus 204 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 283 (487)
+...|..+...+.+.|+++.|.+.|+++.+.. +.+..+|..+...|...|++++|+..|+...+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568889999999999999999999998764 3478899999999999999999999999887643 234678999999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCC-----------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHH
Q 011378 284 GFCKVGEMEKANKLWADMISRKISPN-----------YISYGILINGYCSMGHVTEAFRLWYEMVGKGIK-PTLVSCNTI 351 (487)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~~~~p~-----------~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l 351 (487)
.|...|++++|...+.+..... |+ ...+..+...+...|++++|...++......-. ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999987632 22 223445678899999999999999998875322 267889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCC
Q 011378 352 IKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGR 430 (487)
Q Consensus 352 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 430 (487)
...|...|+.++|...+++..+.. +.+..+|..+...|...|++++|...+++..+. .| +...|..+...|.+.|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCC
Confidence 999999999999999999988653 235778999999999999999999999988764 34 47789999999999999
Q ss_pred hHHHHHHHHHHHHcCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 431 MHDSELILWRMIEKGL---N--------PDRSTYTTLINGHVSQNNLKEAFRFHDE 475 (487)
Q Consensus 431 ~~~a~~~~~~m~~~g~---~--------p~~~ty~~l~~~~~~~~~~~~a~~~~~~ 475 (487)
+++|...+++..+..- . .+...|..+..++...|+.+.+.+..++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999875321 1 1367899999999999999988877653
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.59 E-value=3e-13 Score=123.79 Aligned_cols=246 Identities=13% Similarity=0.080 Sum_probs=131.4
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhh
Q 011378 6 CKDHKIDSAKMFLCEMEQKGVYPDT--VTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDR 83 (487)
Q Consensus 6 ~~~~~~~~a~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 83 (487)
.-.|.+..|....+.... ..|+. ...-.+.+++...|+++.|...++. .-+|+..++..+...+.+.++.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 345566666665554432 12332 2334455666666666666654432 123444555555566666666666
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 011378 84 AKEVLDEMLQMGLSPDT-ATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMK 162 (487)
Q Consensus 84 a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 162 (487)
|.+.++++...+..|+. ..+..+-..+...|++++|.+.+++ +.+...+..+...+.+.|++++|.+.|+.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666655544433 3333333555666666666666654 3455556666666666666666666666665
Q ss_pred HCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011378 163 SAGLVPDNVLY---TIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPD 239 (487)
Q Consensus 163 ~~g~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 239 (487)
+.. |+.... ...+..+...|+.++|..+++++.+. .+.+...|+.+..++.+.|++++|...|++..+.. +-+
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 542 432211 11222333345666666666666554 33455556666666666666666666666655432 224
Q ss_pred HHHHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 011378 240 FYTFTTLIHGHCKDGNMNK-ALNLFDIMT 267 (487)
Q Consensus 240 ~~t~~~li~~~~~~g~~~~-a~~~~~~m~ 267 (487)
+.++..++..+...|+.++ +.++++.+.
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5556666666666665543 345555444
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=5.9e-13 Score=123.87 Aligned_cols=276 Identities=11% Similarity=-0.055 Sum_probs=163.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011378 172 LYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHC 251 (487)
Q Consensus 172 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~ 251 (487)
.+..+...+.+.|+.++|..++++..+.. +-+...|..+...+.+.|+++.|...|+++.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34444555555556666655555554432 1234445555555555555555555555554432 223445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHH--HHHhcCCHHHH
Q 011378 252 KDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILIN--GYCSMGHVTEA 329 (487)
Q Consensus 252 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~--~~~~~~~~~~a 329 (487)
..|++++|...++...+.... +...+..+... .|+......+.. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 555555555555554433111 11111111000 000000011102 25566677777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 011378 330 FRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQ 409 (487)
Q Consensus 330 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 409 (487)
...++...... +.+...+..+...|...|+.++|...+++..+.. +.+...+..+...|...|++++|...+++..+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777766543 3356677777777788888888888887776542 234567778888888888888888888877653
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 410 GLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-----------DRSTYTTLINGHVSQNNLKEAFRFHDE 475 (487)
Q Consensus 410 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------~~~ty~~l~~~~~~~~~~~~a~~~~~~ 475 (487)
. ..+...|..+...+.+.|++++|...+++.....-.. +...|..+...+...|++++|..++++
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2 2346678888888889999999998888877543221 367888888999999999999888764
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.58 E-value=1.4e-12 Score=121.26 Aligned_cols=277 Identities=9% Similarity=-0.082 Sum_probs=198.3
Q ss_pred CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHH
Q 011378 134 DIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILN 213 (487)
Q Consensus 134 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 213 (487)
+...+-.....+.+.|++++|..+|+++.+.. +.+...+..+...+.+.|+.++|...+++..+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 33456677888999999999999999987753 2356788889999999999999999999988753 346678889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHH--HHHccCCH
Q 011378 214 GLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLID--GFCKVGEM 291 (487)
Q Consensus 214 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~ 291 (487)
.+...|+++.|.+.++++.+... .+...+..+... .|+......+-. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 99999999999999999987531 122222222110 011111112212 25566777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 011378 292 EKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKM 371 (487)
Q Consensus 292 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 371 (487)
++|...+.+..... +.+...+..+...+...|++++|...++...... +.+...+..+...+...|+.++|...+++.
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777765432 2256677777778888888888888888776542 335667778888888888888888888887
Q ss_pred HHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-------------CHhhHHHHHHHHHhcCChHHHHHHH
Q 011378 372 VSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-------------DVITYNVILTGFCRQGRMHDSELIL 438 (487)
Q Consensus 372 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-------------~~~~~~~li~~~~~~g~~~~a~~~~ 438 (487)
.+.. +.+...+..+...|.+.|++++|.+.+++..+. .| +...|..+...+.+.|+.++|..++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6643 234667888888888999999999888877653 23 3678888999999999999998877
Q ss_pred HH
Q 011378 439 WR 440 (487)
Q Consensus 439 ~~ 440 (487)
++
T Consensus 310 ~~ 311 (327)
T 3cv0_A 310 AQ 311 (327)
T ss_dssp TC
T ss_pred HH
Confidence 64
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.41 E-value=4.4e-11 Score=106.93 Aligned_cols=121 Identities=12% Similarity=0.002 Sum_probs=64.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHH
Q 011378 320 YCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKA 399 (487)
Q Consensus 320 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 399 (487)
+...|++++|...++...... +.+...+..+...+...|+.++|...+++..+.. +.+...+..+...|.+.|++++|
T Consensus 115 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 192 (258)
T 3uq3_A 115 LTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEA 192 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHH
Confidence 333444555555555544321 1123344555555555666666666665555432 12344555666666666666666
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 400 FALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 400 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
...+++..+.. ..+...|..+...+.+.|++++|...+++..+
T Consensus 193 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 193 IADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666554431 22345566666666666666666666666543
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.41 E-value=7.5e-11 Score=105.41 Aligned_cols=224 Identities=12% Similarity=0.100 Sum_probs=164.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCC----hhhHHH
Q 011378 242 TFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRK--ISPN----YISYGI 315 (487)
Q Consensus 242 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~t~~~ 315 (487)
.+..+-..+...|++++|+..|+...+.. .+...+..+...+...|++++|...+.+..... ..|+ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44555555666666666666666555544 445556666666666666666666666554321 1112 467777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 011378 316 LINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREEN 395 (487)
Q Consensus 316 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 395 (487)
+...+...|++++|...|+..... .|+. ..+...|+.++|...++...... +.+...+..+...|...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 888888888888888888887664 3442 34667788999999999988742 1235578888899999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 396 MDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDE 475 (487)
Q Consensus 396 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~ 475 (487)
+++|...+++..+.. ..+...|..+...|.+.|++++|...+++..+.. ..+...|..+...|...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999887643 3357789999999999999999999999988753 23477889999999999999999999998
Q ss_pred HHHC
Q 011378 476 MLQR 479 (487)
Q Consensus 476 m~~~ 479 (487)
..+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=1.4e-09 Score=106.65 Aligned_cols=199 Identities=13% Similarity=-0.000 Sum_probs=90.2
Q ss_pred cchHHHHHHHHhcCChhhHHHHHHHHHHC-----C---CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHC----C--C
Q 011378 66 FTYNSLINGLCKKGRCDRAKEVLDEMLQM-----G---LSPDTATYNTLLVESCRKENMSEAEEIFCEMSRR----G--V 131 (487)
Q Consensus 66 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g--~ 131 (487)
..||.+-..+...|++++|++.|++..+. + ......+|+.+-..|...|++++|...+++..+. . .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 34555555555556666665555543321 0 1112345555555666666666666555544321 0 0
Q ss_pred CC-CHhHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCcCC
Q 011378 132 AP-DIVSFSTLIGIFSR--NGQLDRALMYFREMKSAGLVPDN-VLYTIIING---YCRNGFVLEALKMRDEMLEKGCVMD 204 (487)
Q Consensus 132 ~p-~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~g~~~~ 204 (487)
.+ ...+++..-.++.+ .+++++|.+.|++..+. .|+. ..+..+..+ +...+..++|++.+++..+.. +.+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 11 12233333333332 23456666666655542 2332 222222222 223344455555555444321 112
Q ss_pred hhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 205 VVTYNTILNGLCR----AKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQ 268 (487)
Q Consensus 205 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (487)
...+..+...+.. .++++.|.+.+++..... +.+...+..+-..|...|+.++|+..|+...+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 2333333333322 345556666666555432 23445566666666666666666666665543
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=2.5e-09 Score=104.88 Aligned_cols=391 Identities=14% Similarity=0.018 Sum_probs=228.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHhh-----CC--CCC-CccchHHHHHHHHhcCChhhHHHHHHHHHHC----C
Q 011378 28 PDTVTYNTLINAYCREGFLEEAFQLMNSMSG-----KG--LKP-GVFTYNSLINGLCKKGRCDRAKEVLDEMLQM----G 95 (487)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~--~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g 95 (487)
.....||.+-..+...|+.++|++.|+.-.+ .+ ..| ...+|+.+-..|...|++++|...+++..+. .
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456789999999999999999999976432 11 123 3467889999999999999999999876542 1
Q ss_pred --CCC-CHHHHHHHHHHHHc--cCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHH---HHhCCCHHHHHHHHHHHHHCCC
Q 011378 96 --LSP-DTATYNTLLVESCR--KENMSEAEEIFCEMSRRGVAPD-IVSFSTLIGI---FSRNGQLDRALMYFREMKSAGL 166 (487)
Q Consensus 96 --~~~-~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~ 166 (487)
..+ ...+++..-.++.+ .+++++|.+.|++..+. .|+ ...+..+..+ +...++.++|++.+++..+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l-- 204 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL-- 204 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--
Confidence 112 24455555444443 45799999999998764 343 3344444333 45567888899888887664
Q ss_pred CCC-hhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 011378 167 VPD-NVLYTIIINGYCR----NGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFY 241 (487)
Q Consensus 167 ~~~-~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 241 (487)
.|+ ...+..+...+.+ .+..++|.+.+++..... +.+...+..+...|.+.|+++.|...+++..+.. +-+..
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 343 4455555555554 456778888888776643 3456678899999999999999999999988753 22455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011378 242 TFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYC 321 (487)
Q Consensus 242 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 321 (487)
++..+-..|...+.... ... ....... ....+..+.|...+....... +.+..++..+-..+.
T Consensus 283 ~~~~lg~~y~~~~~~~~---------~~~-~~~~~~~------~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVM---------NLR-ENGMYGK------RKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHHHH---------HC-------CH------HHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh---------hHH-HHHHHHH------HHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence 66665554432211100 000 0000011 111223566777776655432 234456777778888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHH
Q 011378 322 SMGHVTEAFRLWYEMVGKGIKPTLV--SCNTIIK-GYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDK 398 (487)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 398 (487)
..|++++|...|+........+... .+..+-. .....|+.++|...+++..+ +.|+....... .+.
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~~ 414 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KDK 414 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HHH
Confidence 8888888888888776654333221 1222211 23456888888888887765 34554332222 233
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHH
Q 011378 399 AFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKG-LNPDRSTY 453 (487)
Q Consensus 399 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~ty 453 (487)
+.+++++..+.. ..+..+|+.+-..|...|++++|...|++..+.| ..|+..+|
T Consensus 415 l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 415 LQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 344444433321 3456788888888999999999999999887653 34665554
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.37 E-value=1.7e-09 Score=97.77 Aligned_cols=223 Identities=13% Similarity=0.001 Sum_probs=153.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCeeehH
Q 011378 204 DVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCK----DGNMNKALNLFDIMTQKSIKPDIVTYN 279 (487)
Q Consensus 204 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~ 279 (487)
+...+..+-..+.+.|+++.|.+.|++..+. -+...+..+-..|.. .++.++|+..|+...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4456667777777888888888888887763 245667777777777 888888888887776654 455666
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011378 280 TLIDGFCK----VGEMEKANKLWADMISRKISPNYISYGILINGYCS----MGHVTEAFRLWYEMVGKGIKPTLVSCNTI 351 (487)
Q Consensus 280 ~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 351 (487)
.+-..|.. .+++++|...|+.....+ +...+..+-..|.. .+++++|...|+.....+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 67777777 778888888877776654 55666777777777 777777777777776655 44555566
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011378 352 IKGYCR----SGDASKADEFLSKMVSEGVDPDSISYNTLINGFVR----EENMDKAFALVSKMENQGLVPDVITYNVILT 423 (487)
Q Consensus 352 i~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (487)
-..|.. .++.++|...+++..+.+ +...+..|-..|.. .+++++|...+++..+.+ +...+..+-.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 677777777777766653 34555566666666 777777777777666543 2455566666
Q ss_pred HHHh----cCChHHHHHHHHHHHHc
Q 011378 424 GFCR----QGRMHDSELILWRMIEK 444 (487)
Q Consensus 424 ~~~~----~g~~~~a~~~~~~m~~~ 444 (487)
.|.+ .+++++|...+++..+.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHc
Confidence 6666 67777777777766554
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.36 E-value=2.2e-09 Score=97.09 Aligned_cols=222 Identities=14% Similarity=0.034 Sum_probs=138.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCCHHHHH
Q 011378 29 DTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCK----KGRCDRAKEVLDEMLQMGLSPDTATYN 104 (487)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~ 104 (487)
+..++..+-..+.+.|++++|.+.|+...+. -+...+..+-..+.+ .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455666667777777777777777776652 234456666666666 777777777777776654 555666
Q ss_pred HHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 011378 105 TLLVESCR----KENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSR----NGQLDRALMYFREMKSAGLVPDNVLYTII 176 (487)
Q Consensus 105 ~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 176 (487)
.+-..+.. .+++++|.+.|++..+.+ +...+..+-..|.+ .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 777777777777776654 45566666666666 777777777777766654 34455555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011378 177 INGYCR----NGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCR----AKMLTEADDLFNEMLERGVFPDFYTFTTLIH 248 (487)
Q Consensus 177 l~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~ 248 (487)
-..|.+ .++.++|...+++..+.+ +...+..+-..|.. .++++.|.+.|++..+.+ +...+..+-.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555555 666666666666665543 23455555556666 666666666666665543 2444555555
Q ss_pred HHHh----cCCHHHHHHHHHHHHH
Q 011378 249 GHCK----DGNMNKALNLFDIMTQ 268 (487)
Q Consensus 249 ~~~~----~g~~~~a~~~~~~m~~ 268 (487)
.|.. .++.++|...|+...+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHH
Confidence 5555 5666666666655443
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.35 E-value=5.5e-10 Score=99.57 Aligned_cols=197 Identities=11% Similarity=-0.007 Sum_probs=102.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011378 243 FTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCS 322 (487)
Q Consensus 243 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 322 (487)
+..+...+...|++++|...|+.+.+.. +.+...+..+...|.+.|++++|.+.+.+..... +.+...+..+...|..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 3444444444455555554444443321 1123344444444555555555555554443321 1234445555555556
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHH
Q 011378 323 MGHVTEAFRLWYEMVGKGIKP-TLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFA 401 (487)
Q Consensus 323 ~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 401 (487)
.|++++|...++.....+..| +...+..+...|...|+.++|...+++..+.. +.+...+..+...|...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666555422333 23445555556666666666666666655432 1234455666666666666666666
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 402 LVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 402 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
.+++..+.. ..+...+..+...+.+.|+.++|...++++.+
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666655431 23444556666666666666666666666654
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.34 E-value=5.3e-10 Score=97.53 Aligned_cols=128 Identities=10% Similarity=-0.044 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHH
Q 011378 207 TYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFC 286 (487)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 286 (487)
.|..+...+...|+++.|.+.|++..+.. +.+...+..+...|...|+.++|...++...+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444445555555555555444321 1233444444444455555555555444443321 112223334444444
Q ss_pred cc-CCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 287 KV-GEMEKANKLWADMISRKISPN-YISYGILINGYCSMGHVTEAFRLWYEM 336 (487)
Q Consensus 287 ~~-g~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m 336 (487)
.. |++++|...+.+....+..|+ ...+..+...+...|++++|...++..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 139 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS 139 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44 444444444444433111121 233333444444444444444444443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.33 E-value=4.7e-10 Score=100.03 Aligned_cols=201 Identities=9% Similarity=-0.047 Sum_probs=169.0
Q ss_pred eeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011378 275 IVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKG 354 (487)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 354 (487)
...+..+...+...|++++|...|.+..... +.+...+..+...+...|++++|...++...... +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3456777888999999999999999887643 3356788899999999999999999999987653 3467788889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHH
Q 011378 355 YCRSGDASKADEFLSKMVSEGVDP-DSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHD 433 (487)
Q Consensus 355 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 433 (487)
|...|+.++|.+.++++.+.+..| +...+..+...|...|++++|.+.+++..+.. ..+...+..+...+.+.|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998754556 45678888899999999999999999887643 2357788999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011378 434 SELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQR 479 (487)
Q Consensus 434 a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~ 479 (487)
|...+++..+.. ..+...+..+...+...|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999987642 246677888889999999999999999998764
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.33 E-value=1e-09 Score=107.05 Aligned_cols=346 Identities=13% Similarity=0.051 Sum_probs=185.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCCh---hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011378 36 LINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRC---DRAKEVLDEMLQMGLSPDTATYNTLLVESCR 112 (487)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 112 (487)
+...+.+.|++++|.++|+...+.|. +..+..+-..+...|+. ++|.+.|.+..+. +...+..|-..+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 45566677888888888887766552 22333344444556666 7788887776643 33334444443333
Q ss_pred cC-----ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHH---HHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 011378 113 KE-----NMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDR---ALMYFREMKSAGLVPDNVLYTIIINGYCRNG 184 (487)
Q Consensus 113 ~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 184 (487)
.+ +.++|...|++..+.|... .+..|-..|...+..+. +.+.+......|. ...+..|-..|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCC
Confidence 33 6778888888877765432 45556666665554333 3344444333332 334555556666666
Q ss_pred CHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHH
Q 011378 185 FVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAK---MLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKD----GNMN 257 (487)
Q Consensus 185 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~----g~~~ 257 (487)
.++++......+.+.-...++..+..+-..|.+.| +.++|.+.|++..+.| .++...+..+-..|... ++.+
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 55444444333333222233447777777777777 7778888888777766 34444445555555444 6788
Q ss_pred HHHHHHHHHHHCCCCCCeeehHHHHHH-H--HccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----CHHHH
Q 011378 258 KALNLFDIMTQKSIKPDIVTYNTLIDG-F--CKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMG-----HVTEA 329 (487)
Q Consensus 258 ~a~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~-----~~~~a 329 (487)
+|+..|+... +-+...+..|-.. | ...++.++|.+.|++....| +...+..|-..|. .| ++++|
T Consensus 235 ~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 8888887765 2233444444444 2 45777888888887776655 4555555555555 44 77777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCCHHHHHH
Q 011378 330 FRLWYEMVGKGIKPTLVSCNTIIKGYCR----SGDASKADEFLSKMVSEGVDPDSISYNTLINGFVR----EENMDKAFA 401 (487)
Q Consensus 330 ~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~ 401 (487)
...|+.-. .-+......|-..|.. ..+.++|...+++..+.|. ......|-..|.. ..+.++|..
T Consensus 307 ~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 77776654 3344455555545544 2377777777777776653 2223334444432 456777777
Q ss_pred HHHHHHhCC
Q 011378 402 LVSKMENQG 410 (487)
Q Consensus 402 ~~~~m~~~g 410 (487)
.+++-.+.|
T Consensus 380 ~~~~A~~~g 388 (452)
T 3e4b_A 380 FSQLAKAQD 388 (452)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHCC
Confidence 777766655
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.32 E-value=1.2e-09 Score=95.29 Aligned_cols=211 Identities=9% Similarity=-0.001 Sum_probs=140.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011378 239 DFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILIN 318 (487)
Q Consensus 239 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 318 (487)
+...+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+.+..... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45667777788888888888888887766532 2235567777777888888888888887766532 234566777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCH
Q 011378 319 GYCSM-GHVTEAFRLWYEMVGKGIKPT-LVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENM 396 (487)
Q Consensus 319 ~~~~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 396 (487)
.+... |++++|...++.....+..|+ ...+..+...+...|+.++|...++++.+.. +.+...+..+...|.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 77777 888888888877766333333 4556667777777777777777777766532 12355666777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 011378 397 DKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYT 454 (487)
Q Consensus 397 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~ 454 (487)
++|...+++..+..-..+...+..+...+...|+.+++..+++.+... .|+...+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~ 219 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHH
Confidence 777777776655321134555666666667777777777777766543 34444333
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.31 E-value=1e-10 Score=105.67 Aligned_cols=244 Identities=9% Similarity=-0.047 Sum_probs=138.7
Q ss_pred cCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHH
Q 011378 218 AKMLTEADDLFNEMLERGVF---PDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKA 294 (487)
Q Consensus 218 ~~~~~~a~~~~~~m~~~~~~---~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 294 (487)
.|+++.|...|+++.+.... .+..++..+...+...|++++|...|+...+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 34555666666655543211 123455555556666666666666665554432 11344555566666666666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011378 295 NKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSE 374 (487)
Q Consensus 295 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (487)
.+.|.+..... +.+...+..+...|...|++++|...++..... .|+.......+..+...|+.++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 66666555431 123456666666677777777777777666543 344333444444445567777777777665543
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011378 375 GVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPD-----VITYNVILTGFCRQGRMHDSELILWRMIEKGLNPD 449 (487)
Q Consensus 375 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 449 (487)
. +++...+ .+...+...++.++|...+++..+. .|+ ...|..+...|.+.|++++|...+++.... .|+
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 247 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 247 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cch
Confidence 2 2333333 3566666677777777777665432 221 466777778888888888888888887654 342
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH
Q 011378 450 RSTYTTLINGHVSQNNLKEAFRFH 473 (487)
Q Consensus 450 ~~ty~~l~~~~~~~~~~~~a~~~~ 473 (487)
. +.....++...|++++|++-+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 233344566667777776654
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.29 E-value=1.9e-10 Score=103.88 Aligned_cols=119 Identities=9% Similarity=-0.116 Sum_probs=54.5
Q ss_pred cCChhHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011378 113 KENMSEAEEIFCEMSRRGVAP---DIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEA 189 (487)
Q Consensus 113 ~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 189 (487)
.+++++|...++++.+..... +...+..+...+...|++++|...|++..+.. +.+...|..+...+.+.|+.++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 345555555555555432111 23344445555555555555555555554421 11234444444445555555555
Q ss_pred HHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 190 LKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLE 233 (487)
Q Consensus 190 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (487)
.+.+++..+.. +.+...|..+...|.+.|++++|.+.|+++.+
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55544444321 11233444444444444444444444444443
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.27 E-value=7.7e-10 Score=96.39 Aligned_cols=111 Identities=16% Similarity=0.040 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHH
Q 011378 149 GQLDRALMYFREMKSAGLVPD-NVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDL 227 (487)
Q Consensus 149 g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 227 (487)
|++++|...|++..+. .|+ ...|..+-..+...|+.++|...+++..+.. .+...+..+-..|...|++++|...
T Consensus 98 g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~ 173 (217)
T 2pl2_A 98 GYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQ 173 (217)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555554432 222 3344444444555555555555555544443 3444445555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011378 228 FNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFD 264 (487)
Q Consensus 228 ~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~ 264 (487)
|++..+.. +-+...+..+...+...|+.++|+..|+
T Consensus 174 ~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 174 YAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 55544421 1234444445555555555555554444
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.27 E-value=1.6e-09 Score=97.78 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCe--eehHHHHHHH
Q 011378 208 YNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDI--VTYNTLIDGF 285 (487)
Q Consensus 208 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~ 285 (487)
+-.....+.+.|+++.|...|++..+.. +.+...+..+...|...|++++|+..++...+..-.|+. ..|..+-..+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344445555566666666665555432 112334555555555555555555555555442211111 1144455555
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 286 CKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMV 337 (487)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 337 (487)
...|++++|...|....... +.+...+..+...|...|++++|...++...
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 55555555555555544321 1123344445555555555555555554443
No 50
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.25 E-value=4e-09 Score=102.77 Aligned_cols=378 Identities=12% Similarity=0.051 Sum_probs=234.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh---hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 011378 71 LINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENM---SEAEEIFCEMSRRGVAPDIVSFSTLIGIFSR 147 (487)
Q Consensus 71 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 147 (487)
+-..+.+.|++++|.+.|.+..+.|. ++. +..|-..+...|+. ++|.+.|++..+. +...+..+-..+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~A--~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SEA--QVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CTG--GGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HHH--HHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 45566788999999999999887763 222 22333334445666 8999999888754 44455566664555
Q ss_pred CC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCcCChhhHHHHHHHHHhcC
Q 011378 148 NG-----QLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVL---EALKMRDEMLEKGCVMDVVTYNTILNGLCRAK 219 (487)
Q Consensus 148 ~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 219 (487)
.+ ++++|...|++....|... .+..|-..|...+... ++.+.+....+.|. ...+..+-..|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCC
Confidence 55 7889999999998866432 5666666666655433 44555555555544 456667777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHcc----CCHH
Q 011378 220 MLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDG---NMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKV----GEME 292 (487)
Q Consensus 220 ~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~ 292 (487)
.++.+..-.....+.-...++..+..+-..|...| +.++|+..|+...+.|-. +...+..|-..|... ++.+
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence 55544444333322212223347788888888899 899999999988776632 333334566666544 7999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----ChHHH
Q 011378 293 KANKLWADMISRKISPNYISYGILING-Y--CSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSG-----DASKA 364 (487)
Q Consensus 293 ~a~~~~~~m~~~~~~p~~~t~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-----~~~~a 364 (487)
+|.+.|+... . -+...+..|-.. + ...+++++|...|+.-...| +...+..|-..|. .| +.++|
T Consensus 235 ~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999876 3 344555555555 3 45899999999999988877 5566666666665 45 99999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChHHHHH
Q 011378 365 DEFLSKMVSEGVDPDSISYNTLINGFVR----EENMDKAFALVSKMENQGLVPDVITYNVILTGFCR----QGRMHDSEL 436 (487)
Q Consensus 365 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~ 436 (487)
...+++.. . -+...+..|-..|.. ..+.++|...+++-.+.|. ......|-..|.. ..+..+|..
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 99999877 3 345556666666655 4599999999999888763 3344445445542 568999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 437 ILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 478 (487)
Q Consensus 437 ~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~ 478 (487)
.++...+.|........ ..+......++.++|.++.++.++
T Consensus 380 ~~~~A~~~g~~~a~~~l-~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 380 FSQLAKAQDTPEANDLA-TQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHTTCCHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99998887753322222 223333445567788888777654
No 51
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.25 E-value=2.1e-07 Score=94.24 Aligned_cols=217 Identities=11% Similarity=0.001 Sum_probs=135.2
Q ss_pred HHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 259 ALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKAN-KLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMV 337 (487)
Q Consensus 259 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 337 (487)
...+|+..... .+-+...|-.....+...|+.++|. +++..... .++.+...|-..+...-+.|++++|..+|+...
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~-~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ-CIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455544432 1223445555556666667777775 77777654 333455556666677777788888888887766
Q ss_pred hCC---------CCCC------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHC-C-CCCChhhHHHHHHHHhccC
Q 011378 338 GKG---------IKPT------------LVSCNTIIKGYCRSGDASKADEFLSKMVSE-G-VDPDSISYNTLINGFVREE 394 (487)
Q Consensus 338 ~~~---------~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g-~~p~~~~~~~li~~~~~~~ 394 (487)
... -.|+ ..+|...++...+.|+.+.|..+|....+. + ..+......+.+.-.. .+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CC
Confidence 431 0131 235767777777778888888888887765 2 2233333333333221 34
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 011378 395 NMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP--DRSTYTTLINGHVSQNNLKEAFRF 472 (487)
Q Consensus 395 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~ty~~l~~~~~~~~~~~~a~~~ 472 (487)
+.+.|.++|+...+. ..-+...|...+......|+.+.|+.+|++.......| ....|..+++.-...|+.+.+.++
T Consensus 485 d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 485 DTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 578888888776554 22344556677777777888888888888776543322 235777778877888888888888
Q ss_pred HHHHHHC
Q 011378 473 HDEMLQR 479 (487)
Q Consensus 473 ~~~m~~~ 479 (487)
.+++.+.
T Consensus 564 ~~R~~~~ 570 (679)
T 4e6h_A 564 EKRFFEK 570 (679)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887653
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.25 E-value=7.2e-10 Score=96.56 Aligned_cols=90 Identities=13% Similarity=0.018 Sum_probs=33.9
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 011378 382 SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGH 460 (487)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~l~~~~ 460 (487)
.+..+-..|...|++++|...+++..+.. .+...+..+...+...|++++|...+++..+. .| +...+..+...+
T Consensus 120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 120 LHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASAL 195 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 34444444444444444444444443333 33444444444444444444444444444432 12 233444444444
Q ss_pred HhcCCHHHHHHHHHH
Q 011378 461 VSQNNLKEAFRFHDE 475 (487)
Q Consensus 461 ~~~~~~~~a~~~~~~ 475 (487)
...|++++|...+++
T Consensus 196 ~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 196 LLKGKAEEAARAAAL 210 (217)
T ss_dssp TC-------------
T ss_pred HHccCHHHHHHHHHH
Confidence 444555555444443
No 53
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.24 E-value=3.3e-07 Score=92.78 Aligned_cols=438 Identities=10% Similarity=0.087 Sum_probs=283.5
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCC---hhhHHHHHHH
Q 011378 14 AKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGR---CDRAKEVLDE 90 (487)
Q Consensus 14 a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~ 90 (487)
...+-..+.+.. -|..+|..++..+.+.+.++.+..+|+.+... ++.+...|...+..-.+.++ ++.+.++|++
T Consensus 52 i~~lE~~l~~np--~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 52 IGKLNDMIEEQP--TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 334444455542 48889999999999999999999999998764 34455678888888888888 9999999999
Q ss_pred HHHCC-CCCCHHHHHHHHHHHHccCCh--------hHHHHHHHHHHH-CCC-CCC-HhHHHHHHHHHHh---------CC
Q 011378 91 MLQMG-LSPDTATYNTLLVESCRKENM--------SEAEEIFCEMSR-RGV-APD-IVSFSTLIGIFSR---------NG 149 (487)
Q Consensus 91 m~~~g-~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~m~~-~g~-~p~-~~~~~~li~~~~~---------~g 149 (487)
..... ..|+...|...+.-..+.++. +.+.++|+.... .|. .|+ ...|...+....+ .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 87653 248888888887766555543 334477776543 466 553 4567777665432 34
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhH---HHHHHHHHh----------cCCHHHHHHHHHHHHH--cCCc---CC-------
Q 011378 150 QLDRALMYFREMKSAGLVPDNVLY---TIIINGYCR----------NGFVLEALKMRDEMLE--KGCV---MD------- 204 (487)
Q Consensus 150 ~~~~a~~~~~~m~~~g~~~~~~~~---~~ll~~~~~----------~~~~~~a~~~~~~m~~--~g~~---~~------- 204 (487)
+++.+..+|..........-..+| ..+.+.... ...++.|...+.++.. .++. |.
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 577888999988753221112233 222222100 0112223333333321 1211 10
Q ss_pred -------------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHH
Q 011378 205 -------------VVTYNTILNGLCRAK-------MLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKAL-NLF 263 (487)
Q Consensus 205 -------------~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~-~~~ 263 (487)
...|...+.---..+ ..+.+..+|++.... ++-+...|-....-+...|+.++|. .+|
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 123444444322222 123455677777654 3346777888888888889999997 999
Q ss_pred HHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCC---------CCCC------------hhhHHHHHHHHHh
Q 011378 264 DIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRK---------ISPN------------YISYGILINGYCS 322 (487)
Q Consensus 264 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p~------------~~t~~~li~~~~~ 322 (487)
+.... .++.+...|-..+...-+.|+++.|.++|....... ..|+ ...|...+....+
T Consensus 368 ~rAi~-~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 368 KLGQQ-CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 88765 233455556777888888999999999999887531 0132 2357777887788
Q ss_pred cCCHHHHHHHHHHHHhC-C-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHH
Q 011378 323 MGHVTEAFRLWYEMVGK-G-IKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAF 400 (487)
Q Consensus 323 ~~~~~~a~~~~~~m~~~-~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 400 (487)
.|..+.|..+|....+. + ..+......+.+.-. ..++.+.|..+|+...+. .+-+...+...+.-....|+.+.|.
T Consensus 447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHH
Confidence 89999999999998765 2 222233322333221 235589999999988765 3334556667777777889999999
Q ss_pred HHHHHHHhCCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011378 401 ALVSKMENQGLVP--DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGH 460 (487)
Q Consensus 401 ~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~ 460 (487)
.+|++.....-.+ ....|...+..=.+.|..+.+.++.+++.+. .|+......+++-|
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 9999886653211 3457888888889999999999999999875 34444444444443
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.23 E-value=1.1e-09 Score=96.84 Aligned_cols=200 Identities=15% Similarity=0.108 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011378 239 DFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILIN 318 (487)
Q Consensus 239 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 318 (487)
...+|..+...+...|++++|...|+...+.. +.+...+..+...+.+.|++++|...+.+..... +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44556666667777777777777777665422 2234566666677777777777777777665432 224556666677
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHH
Q 011378 319 GYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDK 398 (487)
Q Consensus 319 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 398 (487)
.+...|++++|...++...+.. +.+...+..+...+...|+.++|...+++..+.. +.+...+..+...|.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777665543 3345566666666777777777777777665432 1245566666666777777777
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 399 AFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 399 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
|...+++..+.. ..+...|..+...|.+.|++++|...+++..+
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 777776665432 22355666666677777777777777776655
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.21 E-value=4.1e-09 Score=95.01 Aligned_cols=159 Identities=12% Similarity=0.056 Sum_probs=75.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHh
Q 011378 175 IIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFP--DFYTFTTLIHGHCK 252 (487)
Q Consensus 175 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~t~~~li~~~~~ 252 (487)
..-..+.+.|+.++|...+++..+.. +-+...|..+...|.+.|++++|...+++..+..-.| ....|..+-..+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34444555556666665555555432 1123355555555555566666666655555422111 12235555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHH
Q 011378 253 DGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISP-NYISYGILINGYCSMGHVTEAFR 331 (487)
Q Consensus 253 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~ 331 (487)
.|++++|+..|+...+.. +.+..++..+-..|...|++++|...|.+.... .| +...|..+...+...+++++|..
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665555544321 112345555555555566666665555544332 22 22333333312222334555555
Q ss_pred HHHHHH
Q 011378 332 LWYEMV 337 (487)
Q Consensus 332 ~~~~m~ 337 (487)
.|+...
T Consensus 164 ~~~~a~ 169 (272)
T 3u4t_A 164 SFVKVL 169 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.19 E-value=3.6e-10 Score=108.74 Aligned_cols=276 Identities=13% Similarity=0.081 Sum_probs=140.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHH
Q 011378 173 YTIIINGYCRNGFVLEALKMRDEMLEKGCVMDV----VTYNTILNGLCRAKMLTEADDLFNEMLER----GV-FPDFYTF 243 (487)
Q Consensus 173 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~t~ 243 (487)
+..+-..+...|+.++|...+++..+.+.. +. ..|..+...|...|+++.|.+.+++..+. +- .....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334455566677777777777766654211 11 34566666666677777777776665432 11 1123445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CeeehHHHHHHHHccCC----------HHHHHHHHHHHHhCCCCC
Q 011378 244 TTLIHGHCKDGNMNKALNLFDIMTQK----SIKP-DIVTYNTLIDGFCKVGE----------MEKANKLWADMISRKISP 308 (487)
Q Consensus 244 ~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~p 308 (487)
..+-..|...|++++|...++...+. +-.| ...++..+-..|...|+ .++|...
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~----------- 198 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA----------- 198 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-----------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-----------
Confidence 55556666666666666666544321 1001 12234444444444444 0000000
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC---
Q 011378 309 NYISYGILINGYCSMGHVTEAFRLWYEMVGK----GIKP-TLVSCNTIIKGYCRSGDASKADEFLSKMVSEGV-DPD--- 379 (487)
Q Consensus 309 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~--- 379 (487)
+++|...+++.... +-.+ ...++..+-..|...|++++|...+++..+..- .++
T Consensus 199 -----------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 199 -----------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 44444444332210 1111 122444555555566666666666655443110 011
Q ss_pred -hhhHHHHHHHHhccCCHHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-
Q 011378 380 -SISYNTLINGFVREENMDKAFALVSKMENQ----GLV-PDVITYNVILTGFCRQGRMHDSELILWRMIEK----GLNP- 448 (487)
Q Consensus 380 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p- 448 (487)
..++..+...|...|++++|...+++..+. +-. ....++..+...|...|++++|...+++.... +-.+
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 341 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence 125556666666677777777666554321 100 01345666666777777777777777765532 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 449 DRSTYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 449 ~~~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
...+|..+...|...|++++|...+++..
T Consensus 342 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 342 EARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 12366666677777777777777777654
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.18 E-value=2.7e-09 Score=94.31 Aligned_cols=195 Identities=14% Similarity=0.091 Sum_probs=78.6
Q ss_pred hHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 011378 68 YNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSR 147 (487)
Q Consensus 68 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 147 (487)
|..+-..+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.+
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 3334444444455555555554444321 1223344444444444455555555554444331 1133444444455555
Q ss_pred CCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHH
Q 011378 148 NGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDL 227 (487)
Q Consensus 148 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 227 (487)
.|++++|.+.+++..+.. ..+...+..+...+.+.|+.++|...+++..+.. +.+...+..+...+.+.|+++.|.+.
T Consensus 104 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555544322 1123344444444444444444444444443321 11233444444444555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 228 FNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMT 267 (487)
Q Consensus 228 ~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 267 (487)
|++..+.. +.+..++..+...|...|+.++|...++...
T Consensus 182 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 182 FAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55444331 1233444444444555555555555544443
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.16 E-value=9e-10 Score=105.96 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----eeehHHHHHHHHccCCHHHHHHHHHHH
Q 011378 242 TFTTLIHGHCKDGNMNKALNLFDIMTQKSIK-PD----IVTYNTLIDGFCKVGEMEKANKLWADM 301 (487)
Q Consensus 242 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m 301 (487)
++..+-..|...|++++|+..++...+.... ++ ..++..+...|...|++++|...+.+.
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555555666666666666666544321100 00 113444445555555555555555443
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.16 E-value=2e-09 Score=103.04 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCChhHHHHHHHHHHHC----CCCC-CHhHH
Q 011378 69 NSLINGLCKKGRCDRAKEVLDEMLQMGLSPD-----TATYNTLLVESCRKENMSEAEEIFCEMSRR----GVAP-DIVSF 138 (487)
Q Consensus 69 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~ 138 (487)
...-..+.+.|++++|...|++..+.. |+ ...|..+-..+...|++++|...+++..+. +-.| ....+
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 333444555666666666666655432 22 234444555555555555555555544321 1111 12234
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Q 011378 139 STLIGIFSRNGQLDRALMYFREM 161 (487)
Q Consensus 139 ~~li~~~~~~g~~~~a~~~~~~m 161 (487)
..+...+...|++++|...+++.
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~a 113 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRH 113 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444555555555555555444
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.16 E-value=9.3e-10 Score=102.18 Aligned_cols=133 Identities=11% Similarity=0.018 Sum_probs=89.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-CHh
Q 011378 347 SCNTIIKGYCRSGDASKADEFLSKMVSE----GVDP-DSISYNTLINGFVREENMDKAFALVSKMENQ----GLVP-DVI 416 (487)
Q Consensus 347 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~ 416 (487)
++..+-..|...|+.++|...+++..+. +..+ ...++..+...|...|++++|.+.+++..+. +-.+ ...
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 5566666777777777777777765532 1111 1236777777788888888888887765431 1111 145
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011378 417 TYNVILTGFCRQGRMHDSELILWRMIEK----GLNP-DRSTYTTLINGHVSQNNLKEAFRFHDEMLQR 479 (487)
Q Consensus 417 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~~ 479 (487)
++..+...+...|++++|...+++.... +-.+ ...++..+...|...|++++|...+++..+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6777788888899999998888887542 1111 1347777888899999999999999887753
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.14 E-value=1.4e-09 Score=101.04 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 348 CNTIIKGYCRSGDASKADEFLSKMVSE----GVDP-DSISYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 348 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
+..+-..|...|+.++|...+++..+. +-.+ ...++..+...|.+.|++++|...+++..+
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 334444444455555555544443321 1101 122445555556666666666666655543
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.14 E-value=1.6e-09 Score=103.76 Aligned_cols=130 Identities=17% Similarity=0.142 Sum_probs=70.8
Q ss_pred ehHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hh
Q 011378 277 TYNTLIDGFCKVGEMEKANKLWADMISRKI-SPN----YISYGILINGYCSMGHVTEAFRLWYEMVGK----GIKPT-LV 346 (487)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~ 346 (487)
++..+-..|...|++++|...+.+...... .++ ..++..+...|...|++++|...++..... +-.+. ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 344555555555666666555554432100 011 225556666666667777766666654421 11111 33
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHhccCCHHHHHHHHHHH
Q 011378 347 SCNTIIKGYCRSGDASKADEFLSKMVSE----GVDPD-SISYNTLINGFVREENMDKAFALVSKM 406 (487)
Q Consensus 347 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m 406 (487)
++..+-..|...|++++|...+++.... +-.+. ..++..+-..|...|++++|.+.+++.
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5556666677777777777777665432 11111 345666667777777777777776654
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.13 E-value=5.3e-08 Score=89.69 Aligned_cols=233 Identities=10% Similarity=-0.012 Sum_probs=139.8
Q ss_pred hhHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHH
Q 011378 206 VTYNTILNGLCRA----KML----TEADDLFNEMLERGVFPDFYTFTTLIHGHCK-------DGNM-------NKALNLF 263 (487)
Q Consensus 206 ~~~~~li~~~~~~----~~~----~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~-------~g~~-------~~a~~~~ 263 (487)
..|...+.---+. ++. +.|..+|++..+.. +-++..|..+...+.. .|+. ++|..+|
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 4566666554333 132 56667777776532 3355667666666653 4664 7777777
Q ss_pred HHHHHCCCCCC-eeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh-h-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011378 264 DIMTQKSIKPD-IVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNY-I-SYGILINGYCSMGHVTEAFRLWYEMVGKG 340 (487)
Q Consensus 264 ~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~-t~~~li~~~~~~~~~~~a~~~~~~m~~~~ 340 (487)
+...+. +.|+ ...|..+...+.+.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|+...+..
T Consensus 88 ~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 88 ERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 766542 2343 34677777777777777777777777665 33432 2 56777777777777777777777766543
Q ss_pred CCCChhhHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCC--Hh
Q 011378 341 IKPTLVSCNTIIKGY-CRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQ-GLVPD--VI 416 (487)
Q Consensus 341 ~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~--~~ 416 (487)
+++...|....... ...|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++.... .+.|+ ..
T Consensus 165 -p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp -TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 22333333222221 12577777777777665431 123456666666677777777777777776664 23442 45
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011378 417 TYNVILTGFCRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 417 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 444 (487)
.|..++....+.|+.++|..+++++.+.
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666667777777777777776653
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.12 E-value=1.2e-08 Score=97.11 Aligned_cols=228 Identities=11% Similarity=-0.010 Sum_probs=115.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc--CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CC-CeeehHH
Q 011378 212 LNGLCRAKMLTEADDLFNEMLER--GVF--P-DFYTFTTLIHGHCKDGNMNKALNLFDIMTQK----SI-KP-DIVTYNT 280 (487)
Q Consensus 212 i~~~~~~~~~~~a~~~~~~m~~~--~~~--~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~~-~~~~~~~ 280 (487)
-..+...|+++.|...|++..+. ... + ...++..+-..|...|+.+.|+..++...+. +- .+ ...+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34456677777777777776542 111 1 2345666777777777777777777654431 10 01 1234555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCChhhHHH
Q 011378 281 LIDGFCKVGEMEKANKLWADMISR----KISP-NYISYGILINGYCSMGHVTEAFRLWYEMVGK----GI-KPTLVSCNT 350 (487)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ 350 (487)
+-..|...|++++|...+.+.... +-.+ ...++..+-..|...|++++|...+++.... +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 566666667777766666654421 1011 1124555666666666666666666654431 22 222344555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCCChhhHHHHHHHHhccCC---HHHHHHHHHHHHhCCCCCCH-hhHHHHH
Q 011378 351 IIKGYCRSGDASKADEFLSKMVSE----GVDPDSISYNTLINGFVREEN---MDKAFALVSKMENQGLVPDV-ITYNVIL 422 (487)
Q Consensus 351 li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~~-~~~~~li 422 (487)
+-..|.+.|+.++|...+++..+. +-+.....+..|-..|...|+ +++|..++++. +..|+. ..+..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 556666666666666666554421 111111223444445555555 34444433332 222221 2334444
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 011378 423 TGFCRQGRMHDSELILWRMI 442 (487)
Q Consensus 423 ~~~~~~g~~~~a~~~~~~m~ 442 (487)
..|.+.|++++|...+++..
T Consensus 347 ~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 45555555555555555443
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.11 E-value=8e-08 Score=88.45 Aligned_cols=233 Identities=7% Similarity=0.026 Sum_probs=164.2
Q ss_pred hhHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCcCChhhHHHHHHHHHh-------cCCH-------HHHHHHH
Q 011378 171 VLYTIIINGYCRN----GFV----LEALKMRDEMLEKGCVMDVVTYNTILNGLCR-------AKML-------TEADDLF 228 (487)
Q Consensus 171 ~~~~~ll~~~~~~----~~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~ 228 (487)
..|...++.--+. ++. .+|...+++.... .+-+...|..+...+.. .|++ ++|..+|
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 4566666654443 122 5677777777664 23455677777776653 4775 8888888
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCee--ehHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011378 229 NEMLERGVFP-DFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIV--TYNTLIDGFCKVGEMEKANKLWADMISRK 305 (487)
Q Consensus 229 ~~m~~~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 305 (487)
++..+. +.| +...|..+...+.+.|++++|..+|+...+ +.|+.. .|..+...+.+.|++++|..+|.+.....
T Consensus 88 ~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 88 ERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 887763 234 556788888888888999999999988776 345432 68888888888889999999988877543
Q ss_pred CCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC--hh
Q 011378 306 ISPNYISYGILINGYC-SMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEG-VDPD--SI 381 (487)
Q Consensus 306 ~~p~~~t~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~--~~ 381 (487)
+++...|........ ..|+.++|..+|+...+.. +-+...|..+...+.+.|+.++|..+|+...... ..|+ ..
T Consensus 165 -p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp -TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 223344433322222 3688999999888876542 3356778888888888899999999998888763 4553 45
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 011378 382 SYNTLINGFVREENMDKAFALVSKMENQ 409 (487)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 409 (487)
.|..++....+.|+.+.|..++++..+.
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888889999998888887653
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.10 E-value=9.3e-09 Score=97.94 Aligned_cols=160 Identities=11% Similarity=0.043 Sum_probs=86.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C--CcCChhhHHHH
Q 011378 143 GIFSRNGQLDRALMYFREMKSA----GLVP-DNVLYTIIINGYCRNGFVLEALKMRDEMLEK----G--CVMDVVTYNTI 211 (487)
Q Consensus 143 ~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g--~~~~~~~~~~l 211 (487)
..+...|++++|...|++..+. +-.+ ...+|..+-..|...|+.++|...+.+..+. + ......+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 4456667777777777766542 1111 1235566666666666666666666554431 1 01112355666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCeeehHHH
Q 011378 212 LNGLCRAKMLTEADDLFNEMLER----GVFP-DFYTFTTLIHGHCKDGNMNKALNLFDIMTQ----KSI-KPDIVTYNTL 281 (487)
Q Consensus 212 i~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~~-~~~~~~~~~l 281 (487)
-..|...|+++.|.+.|++..+. +-.+ ...++..+-..|...|++++|+..|+...+ .+- +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 66666777777777766665432 1000 113555666666666666666666655443 122 1223345555
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 011378 282 IDGFCKVGEMEKANKLWADMI 302 (487)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~ 302 (487)
-..|.+.|++++|...+.+..
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 556666666666666655443
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.09 E-value=2.8e-09 Score=97.94 Aligned_cols=168 Identities=16% Similarity=0.104 Sum_probs=95.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 011378 205 VVTYNTILNGLCRAKMLTEADDLFNEMLER-------GVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQK------SI 271 (487)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------~~ 271 (487)
..++..+...+...|+++.|..+|+++.+. .......++..+...|...|++++|...++...+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777777788888888888888877652 22223456677777777788888888777765432 11
Q ss_pred CC-CeeehHHHHHHHHccCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 011378 272 KP-DIVTYNTLIDGFCKVGEMEKANKLWADMISR------KISP-NYISYGILINGYCSMGHVTEAFRLWYEMVGK---- 339 (487)
Q Consensus 272 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---- 339 (487)
.| ...++..+...|...|++++|...+.+.... +..| ....+..+...+...|++++|...++.....
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 11 2345566666666666777766666655432 1112 2234555555555566666666655554432
Q ss_pred --CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 340 --GIKP-TLVSCNTIIKGYCRSGDASKADEFLSKMV 372 (487)
Q Consensus 340 --~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 372 (487)
+-.| ...++..+...|...|+.++|...+++..
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111 12234444555555555555555555544
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.08 E-value=4.2e-09 Score=96.77 Aligned_cols=169 Identities=17% Similarity=0.109 Sum_probs=136.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 011378 170 NVLYTIIINGYCRNGFVLEALKMRDEMLEK-------GCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLER------GV 236 (487)
Q Consensus 170 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~ 236 (487)
..++..+...+...|+.++|...+++..+. ..+.....+..+...|...|++++|...+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 457888999999999999999999988763 33445567888999999999999999999998764 22
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CeeehHHHHHHHHccCCHHHHHHHHHHHHhC----
Q 011378 237 FP-DFYTFTTLIHGHCKDGNMNKALNLFDIMTQK------SIKP-DIVTYNTLIDGFCKVGEMEKANKLWADMISR---- 304 (487)
Q Consensus 237 ~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 304 (487)
.| ...++..+...|...|++++|...|+...+. +-.| ....+..+-..+...|++++|...+.+....
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22 4567888999999999999999999877653 2222 3456788889999999999999999988754
Q ss_pred --CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011378 305 --KISP-NYISYGILINGYCSMGHVTEAFRLWYEMVG 338 (487)
Q Consensus 305 --~~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 338 (487)
+..| ...++..+...|...|++++|...+++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2233 345788899999999999999999998764
No 69
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.03 E-value=1.8e-07 Score=88.64 Aligned_cols=297 Identities=12% Similarity=0.067 Sum_probs=187.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHHH
Q 011378 175 IIINGYCRNGFVLEALKMRDEMLEKGCVMDVV----TYNTILNGLCRAKMLTEADDLFNEMLERGV-FPDF----YTFTT 245 (487)
Q Consensus 175 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~t~~~ 245 (487)
..-..+...|+.++|...+++.....-..+.. .++.+-..+...|+++.|.+.+++..+..- ..+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445567899999999888877643222221 455666778888999999999888764210 1122 33566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCC--CC-eeehHHHHHHHHccCCHHHHHHHHHHHHhCCCC--C--ChhhHH
Q 011378 246 LIHGHCKDGNMNKALNLFDIMTQK----SIK--PD-IVTYNTLIDGFCKVGEMEKANKLWADMISRKIS--P--NYISYG 314 (487)
Q Consensus 246 li~~~~~~g~~~~a~~~~~~m~~~----~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p--~~~t~~ 314 (487)
+-..+...|++++|...++...+. +-. |. ...+..+-..+...|++++|...+.+....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777788899999999888766432 222 22 234566677788889999999988876643221 1 234567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hhhHHH
Q 011378 315 ILINGYCSMGHVTEAFRLWYEMVGKGIKPTL-VSCN-----TIIKGYCRSGDASKADEFLSKMVSEGVDPD---SISYNT 385 (487)
Q Consensus 315 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ 385 (487)
.+...+...|++++|...+++.....-.++. ..+. .....+...|+.++|...++........++ ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 7777888889999999888876543211111 1121 223446788899999888887665332111 224566
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh----CCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011378 386 LINGFVREENMDKAFALVSKMEN----QGLVPDV-ITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGH 460 (487)
Q Consensus 386 li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~ 460 (487)
+...+...|++++|...+++... .|..++. ..+..+...+...|+.++|...+++.....- . ...+..+
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~~~~ 332 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFISHF 332 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHHHHH
Confidence 67778888899888888876642 2322233 2556666777888888888888888764210 0 1123344
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 011378 461 VSQNNLKEAFRFHDEMLQR 479 (487)
Q Consensus 461 ~~~~~~~~a~~~~~~m~~~ 479 (487)
...| +....+++.+...
T Consensus 333 ~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 333 VIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HTTH--HHHHHHHHHHHHT
T ss_pred HHcc--HHHHHHHHHHHhC
Confidence 4455 4556666666543
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.00 E-value=3.7e-07 Score=86.36 Aligned_cols=200 Identities=10% Similarity=-0.004 Sum_probs=109.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--Cee
Q 011378 208 YNTILNGLCRAKMLTEADDLFNEMLER----GVF--P-DFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIK--P--DIV 276 (487)
Q Consensus 208 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~--~~~ 276 (487)
+..+-..+...|++++|...+++..+. +-. | ....+..+-..+...|++++|...++........ + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344555556666666666666655432 111 2 2234445556666667777777666654432111 1 123
Q ss_pred ehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhh
Q 011378 277 TYNTLIDGFCKVGEMEKANKLWADMISRKISPNY-ISYG-----ILINGYCSMGHVTEAFRLWYEMVGKGIKPT---LVS 347 (487)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~t~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~ 347 (487)
++..+-..+...|++++|...+.+.......++. ..+. .....+...|++++|...++........++ ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 4555556666677777777777665432111111 1111 222335677777777777766544321111 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCChh-hHHHHHHHHhccCCHHHHHHHHHHHH
Q 011378 348 CNTIIKGYCRSGDASKADEFLSKMVS----EGVDPDSI-SYNTLINGFVREENMDKAFALVSKME 407 (487)
Q Consensus 348 ~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~ 407 (487)
+..+...+...|+.++|...++.... .|..++.. .+..+-.++...|+.++|...+++..
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45566777777888888777776643 22222222 55556677778888888888777654
No 71
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.99 E-value=1.7e-07 Score=88.68 Aligned_cols=220 Identities=11% Similarity=0.066 Sum_probs=95.4
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCC
Q 011378 108 VESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQ-LDRALMYFREMKSAGLVP-DNVLYTIIINGYCRNGF 185 (487)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~ 185 (487)
..+.+.|++++|.+.+++..+.. +-+...|+.+-.++.+.|+ +++|+..|++..... | +...|..+-.++.+.|+
T Consensus 105 ~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~~~~~~g~ 181 (382)
T 2h6f_A 105 AVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVLVEWLRD 181 (382)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHccC
Confidence 33344444444444444443321 1123334444444444443 444444444444321 2 23344444444444444
Q ss_pred HHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHH-----
Q 011378 186 VLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCK-DGNMNKA----- 259 (487)
Q Consensus 186 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~-~g~~~~a----- 259 (487)
.++|...+++..+.. +-+...|..+-.++.+.|++++|...|+++.+.. +-+...|+.+-.++.+ .|..++|
T Consensus 182 ~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 182 PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 444444444444321 1133344444455555555555555555554432 1234444444444544 3333444
Q ss_pred HHHHHHHHHCCCCC-CeeehHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---------CHH
Q 011378 260 LNLFDIMTQKSIKP-DIVTYNTLIDGFCKVG--EMEKANKLWADMISRKISPNYISYGILINGYCSMG---------HVT 327 (487)
Q Consensus 260 ~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~---------~~~ 327 (487)
+..|+...+. .| +...|+.+-..+.+.| +.++|.+.+.++ .....+...+..+...|...| .++
T Consensus 260 l~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~ 335 (382)
T 2h6f_A 260 VQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILN 335 (382)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 2444433321 22 2234444444454444 355555555444 112223344455555555442 235
Q ss_pred HHHHHHHHH
Q 011378 328 EAFRLWYEM 336 (487)
Q Consensus 328 ~a~~~~~~m 336 (487)
+|..+++.+
T Consensus 336 ~A~~~~~~l 344 (382)
T 2h6f_A 336 KALELCEIL 344 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566665555
No 72
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.98 E-value=2.2e-07 Score=87.85 Aligned_cols=226 Identities=10% Similarity=0.065 Sum_probs=126.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCcCChhhHHHHHHH
Q 011378 137 SFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD-NVLYTIIINGYCRNGF-VLEALKMRDEMLEKGCVMDVVTYNTILNG 214 (487)
Q Consensus 137 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 214 (487)
.|..+-..+.+.|++++|+..+++.... .|+ ...|+.+-..+.+.|+ .++|+..+++..+..- -+...|+.+-.+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 3445555566666666666666666553 233 4456666666666664 6666666666655321 234456666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHc-cCCHHH
Q 011378 215 LCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCK-VGEMEK 293 (487)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~ 293 (487)
+.+.|++++|...|+++.+.. +-+...|..+-.++.+.|++++|+..|+.+.+... -+...|+.+-..+.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchH
Confidence 666666666666666666542 22455666666666666666666666666554321 134455566666665 444355
Q ss_pred H-----HHHHHHHHhCCCCC-ChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC------
Q 011378 294 A-----NKLWADMISRKISP-NYISYGILINGYCSMG--HVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSG------ 359 (487)
Q Consensus 294 a-----~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~------ 359 (487)
| ...+.+.... .| +...|..+...+...| ++++|...+.++ ..-..+...+..+...|.+.|
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 5 3555544432 23 3445666666666555 466666666655 222334455556666665543
Q ss_pred ---ChHHHHHHHHHH
Q 011378 360 ---DASKADEFLSKM 371 (487)
Q Consensus 360 ---~~~~a~~~~~~m 371 (487)
..++|.++++++
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 235666666665
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.96 E-value=2.1e-07 Score=88.40 Aligned_cols=227 Identities=10% Similarity=0.009 Sum_probs=124.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CC-CeeehHHH
Q 011378 213 NGLCRAKMLTEADDLFNEMLERGV-FPD----FYTFTTLIHGHCKDGNMNKALNLFDIMTQK----SI-KP-DIVTYNTL 281 (487)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~~-~~~~~~~l 281 (487)
..+...|+++.|...|++..+... .++ ..++..+-..|...|+.+.|...++...+. +- .+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344567788888888877654311 122 345666777777778877777777654431 10 11 13355666
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChhhHHHHH
Q 011378 282 IDGFCKVGEMEKANKLWADMISR----KISP-NYISYGILINGYCSMGHVTEAFRLWYEMVGK----GIKPTLVSCNTII 352 (487)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li 352 (487)
-..|...|++++|...+.+.... +-.+ ...++..+-..|...|++++|...+++.... +.+....++..+-
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 66677777777777777655431 1111 1234566666677777777777777665431 2122244556666
Q ss_pred HHHHhcCChHHHHHHHHHHHHCC----CCCChhhHHHHHHHHhccCC---HHHHHHHHHHHHhCCCCCCH-hhHHHHHHH
Q 011378 353 KGYCRSGDASKADEFLSKMVSEG----VDPDSISYNTLINGFVREEN---MDKAFALVSKMENQGLVPDV-ITYNVILTG 424 (487)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~~-~~~~~li~~ 424 (487)
..|.+.|+.++|...+++..+.. -+.....+..+-..|...++ +++|...+++ .+..|+. ..+..+...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHH
Confidence 66667777777777776655421 11112234455555555555 4444444443 2222222 234445555
Q ss_pred HHhcCChHHHHHHHHHHH
Q 011378 425 FCRQGRMHDSELILWRMI 442 (487)
Q Consensus 425 ~~~~g~~~~a~~~~~~m~ 442 (487)
|.+.|++++|...|++..
T Consensus 346 y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666666666666655543
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.96 E-value=1e-07 Score=79.82 Aligned_cols=163 Identities=11% Similarity=0.068 Sum_probs=99.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 011378 312 SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFV 391 (487)
Q Consensus 312 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 391 (487)
.+..+...+...|++++|...++...... +.+...+..+...+...|+.++|...+++..+.. +.+...+..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445555666666666666665554321 2344555666666666666666666666665432 223455666666666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011378 392 REENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFR 471 (487)
Q Consensus 392 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~ 471 (487)
..|++++|.+.+++..+.. ..+...+..+...+...|++++|...+++..... ..+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777776665431 2345566666667777777777777777766542 2345666667777777777777777
Q ss_pred HHHHHHH
Q 011378 472 FHDEMLQ 478 (487)
Q Consensus 472 ~~~~m~~ 478 (487)
.+++..+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.95 E-value=1.1e-07 Score=90.29 Aligned_cols=159 Identities=14% Similarity=0.061 Sum_probs=82.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CcC-ChhhHHHHH
Q 011378 144 IFSRNGQLDRALMYFREMKSAGL-VPD----NVLYTIIINGYCRNGFVLEALKMRDEMLEK----G-CVM-DVVTYNTIL 212 (487)
Q Consensus 144 ~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g-~~~-~~~~~~~li 212 (487)
.+...|++++|...|++..+.-- .++ ..++..+-..|...|+.+.|...+.+..+. + ..+ ...+++.+-
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34566777777777766654210 111 234555556666666666666665554331 1 011 133455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCeeehHHHHH
Q 011378 213 NGLCRAKMLTEADDLFNEMLER----GVFP-DFYTFTTLIHGHCKDGNMNKALNLFDIMTQK----SIKPDIVTYNTLID 283 (487)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li~ 283 (487)
..|...|+++.|.+.|++..+. +-.+ ...++..+-..|...|++++|+..|+...+. +-+....++..+-.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 6666677777777666665432 1111 1234555566666666666666666554430 11111334455555
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 011378 284 GFCKVGEMEKANKLWADMI 302 (487)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~ 302 (487)
.|.+.|++++|...+.+..
T Consensus 270 ~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5555566666655555544
No 76
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.89 E-value=5.6e-07 Score=75.62 Aligned_cols=164 Identities=13% Similarity=0.087 Sum_probs=82.5
Q ss_pred eehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011378 276 VTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGY 355 (487)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 355 (487)
.+|..+=..|.+.|++++|.+.|++..+.. +-+...+..+...|...|++++|...+....... +.+...+..+-..+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 345555555666666666666665554321 1134455555555556666666665555544332 22333444444455
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 011378 356 CRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSE 435 (487)
Q Consensus 356 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 435 (487)
...++.+.+...+++..... +-+...+..+-..|.+.|++++|.+.+++..+.. .-+...|..+...|.+.|++++|.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 55555555555555544321 1123445555555555555555555555544321 113344555555555555555555
Q ss_pred HHHHHHHH
Q 011378 436 LILWRMIE 443 (487)
Q Consensus 436 ~~~~~m~~ 443 (487)
..|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555443
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.88 E-value=1.1e-07 Score=93.23 Aligned_cols=211 Identities=10% Similarity=0.047 Sum_probs=109.6
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHH
Q 011378 81 CDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENM-SEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFR 159 (487)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 159 (487)
++.+.+.+++..... ..+...|..+-..+...|++ ++|.+.|++..+.. +-+...|..+-..|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444433221 12444555555555555665 66666655554432 1134455555555666666666666666
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhc--------CCHH
Q 011378 160 EMKSAGLVPDNVLYTIIINGYCRN---------GFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRA--------KMLT 222 (487)
Q Consensus 160 ~m~~~g~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------~~~~ 222 (487)
+..+. .|+...+..+-..+... |+.++|.+.+++..+.. +-+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 55543 24445555555555555 56666666665555432 12344555555555555 5566
Q ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CeeehHHHHHHHHccCCHHHHHHHH
Q 011378 223 EADDLFNEMLERGVF--PDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKP-DIVTYNTLIDGFCKVGEMEKANKLW 298 (487)
Q Consensus 223 ~a~~~~~~m~~~~~~--~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~ 298 (487)
+|.+.|++..+..-. -+...|..+-..|...|++++|+..|+...+. .| +...+..+-..+...|++++|...+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666665543200 24555666666666666666666666555432 12 2234555555555556666655544
No 78
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.88 E-value=3.1e-08 Score=89.36 Aligned_cols=227 Identities=15% Similarity=0.087 Sum_probs=152.9
Q ss_pred HhcCCHHHHHHHHHHHHHC-------CCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhC------CCCC-ChhhHHHH
Q 011378 251 CKDGNMNKALNLFDIMTQK-------SIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISR------KISP-NYISYGIL 316 (487)
Q Consensus 251 ~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~t~~~l 316 (487)
...|++++|+..|+...+. .-+....++..+-..|...|++++|...+.+.... +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777887777655431 11223567888889999999999999999987754 2223 35678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-hhh
Q 011378 317 INGYCSMGHVTEAFRLWYEMVGK------GI-KPTLVSCNTIIKGYCRSGDASKADEFLSKMVSE------GVDPD-SIS 382 (487)
Q Consensus 317 i~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~ 382 (487)
...|...|++++|...+...... .- +....++..+-..|...|++++|...+++..+. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999987653 11 223567888888999999999999999988764 22332 457
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhC-------CCCCCHhh-HHHHHHHHHhcCChHHHHHHHHHHHH--cCCC---C-
Q 011378 383 YNTLINGFVREENMDKAFALVSKMENQ-------GLVPDVIT-YNVILTGFCRQGRMHDSELILWRMIE--KGLN---P- 448 (487)
Q Consensus 383 ~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~---p- 448 (487)
+..+...|...|++++|...+++..+. ...+.... |..+...+...+....+.. +.+... .... |
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence 888889999999999999999877542 12333333 3333333333333222222 222211 1111 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 449 DRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 478 (487)
Q Consensus 449 ~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~ 478 (487)
...+|..+...|...|++++|..++++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234788888999999999999999998764
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.87 E-value=3.3e-07 Score=76.68 Aligned_cols=160 Identities=14% Similarity=0.040 Sum_probs=77.8
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 011378 104 NTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRN 183 (487)
Q Consensus 104 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 183 (487)
..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...+++..+.. ..+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 334444444555555555554443321 1234444455555555555555555555544321 12233444445555555
Q ss_pred CCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011378 184 GFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLF 263 (487)
Q Consensus 184 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~ 263 (487)
|+.++|.+.+++..+.. +.+...+..+...+...|+++.|.+.+++..+.. +.+...+..+...+...|+.++|...+
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555444331 1233445555555555555555555555554432 223445555555555555555555555
Q ss_pred HHHH
Q 011378 264 DIMT 267 (487)
Q Consensus 264 ~~m~ 267 (487)
+...
T Consensus 168 ~~~~ 171 (186)
T 3as5_A 168 KKAN 171 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 80
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.86 E-value=9e-07 Score=74.32 Aligned_cols=57 Identities=9% Similarity=0.004 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 208 YNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDI 265 (487)
Q Consensus 208 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~ 265 (487)
+..+-..|.+.|++++|.+.|++..+.. +.+..+|..+-..|.+.|+.++|+..|+.
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 110 YYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333344444444444444444433321 11233344444444444444444444443
No 81
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.85 E-value=1.3e-07 Score=92.64 Aligned_cols=206 Identities=13% Similarity=-0.005 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHH
Q 011378 221 LTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNM-NKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWA 299 (487)
Q Consensus 221 ~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (487)
++.+...+++.... -+.+...+..+-..+...|++ ++|+..|+...+.. +-+...|..+-..|.+.|++++|...|.
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444443321 123455555666666666666 66666665554331 1123455555555555666666666555
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CChH
Q 011378 300 DMISRKISPNYISYGILINGYCSM---------GHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRS--------GDAS 362 (487)
Q Consensus 300 ~m~~~~~~p~~~t~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------~~~~ 362 (487)
..... .|+...+..+-..+... |++++|...+++..... +.+...|..+-.+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 55433 24445555555555555 55555555555544331 22334444444444444 4455
Q ss_pred HHHHHHHHHHHCCCCC----ChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChHHHH
Q 011378 363 KADEFLSKMVSEGVDP----DSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSE 435 (487)
Q Consensus 363 ~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 435 (487)
+|...+++..+. .| +...|..+-..|...|++++|.+.+++..+. .| +...+..+...+...|++++|.
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544432 12 3334444444444455555555444444332 12 2223444444444444444443
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.85 E-value=7.2e-08 Score=86.95 Aligned_cols=133 Identities=15% Similarity=0.060 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-C
Q 011378 136 VSFSTLIGIFSRNGQLDRALMYFREMKSA------GLVP-DNVLYTIIINGYCRNGFVLEALKMRDEMLEK------G-C 201 (487)
Q Consensus 136 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------g-~ 201 (487)
.++..+...+...|++++|...+++.... +-.| ...++..+-..|...|+.++|...+++..+. . .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444555555555555555555554332 1111 1234555555555555555555555444332 1 1
Q ss_pred cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 202 VMDVVTYNTILNGLCRAKMLTEADDLFNEMLER------GVFP-DFYTFTTLIHGHCKDGNMNKALNLFDIMTQ 268 (487)
Q Consensus 202 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (487)
+.....|..+...|...|++++|...|++..+. +-.| ...++..+...|...|+.++|...++...+
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223445666667777777777777777776543 1122 245666777777777777777777765543
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.70 E-value=3.5e-06 Score=75.87 Aligned_cols=178 Identities=10% Similarity=0.084 Sum_probs=84.2
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 294 ANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGI-KPTLVSCNTIIKGYCRSGDASKADEFLSKMV 372 (487)
Q Consensus 294 a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 372 (487)
|...|++....+ .++..+...+..++...|++++|++++......+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444443332 23333334555555556666666666655443332 1233445555566666666666666666654
Q ss_pred HCCCCC-----ChhhHHHHHHHHh--ccC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 373 SEGVDP-----DSISYNTLINGFV--REE--NMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 373 ~~g~~p-----~~~~~~~li~~~~--~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
+. .| +..+...|..+++ ..| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|+..++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 42 34 2334444444422 122 566666666665443 23322223333355566666666666654432
Q ss_pred c-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 444 K-----GL---NP-DRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 478 (487)
Q Consensus 444 ~-----g~---~p-~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~ 478 (487)
. +- .| ++.++..++......|+ +|.++++++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 1 00 12 33344344444444454 55555555553
No 84
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.70 E-value=1.4e-06 Score=68.42 Aligned_cols=94 Identities=15% Similarity=0.223 Sum_probs=41.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011378 382 SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHV 461 (487)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~ 461 (487)
.+..+...+...|++++|...++++...+ ..+...+..+...+.+.|++++|...++++.... ..+...+..+...+.
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 114 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 33334444444444444444444443321 1123344444444455555555555555444321 112344444555555
Q ss_pred hcCCHHHHHHHHHHHH
Q 011378 462 SQNNLKEAFRFHDEML 477 (487)
Q Consensus 462 ~~~~~~~a~~~~~~m~ 477 (487)
..|++++|...++++.
T Consensus 115 ~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 115 KQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHH
Confidence 5555555555555544
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.70 E-value=1.5e-06 Score=68.16 Aligned_cols=130 Identities=15% Similarity=0.222 Sum_probs=110.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 011378 312 SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFV 391 (487)
Q Consensus 312 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 391 (487)
.|..+...+...|++++|..+++.+.... +.+...+..+...+...|+.++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 56788889999999999999999987654 3466788888999999999999999999988654 235667888999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011378 392 REENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 392 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 444 (487)
..|++++|.+.++++.+.. ..+...+..+...+.+.|++++|...+.++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999987643 335778889999999999999999999998764
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.67 E-value=3.1e-06 Score=76.25 Aligned_cols=179 Identities=10% Similarity=0.037 Sum_probs=108.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCeeehHHHHHHHHccCCHHHHHHHHHHHH
Q 011378 224 ADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIK-PDIVTYNTLIDGFCKVGEMEKANKLWADMI 302 (487)
Q Consensus 224 a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (487)
+...|++..+.+ .++..++..+-.++...|++++|++++......+-. -+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455666655544 445555556667777788888888887765443321 234566677777888888888888887776
Q ss_pred hCCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 303 SRKISP-----NYISYGILING--YCSMG--HVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS 373 (487)
Q Consensus 303 ~~~~~p-----~~~t~~~li~~--~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (487)
+. .| +..+...|..+ ....| +..+|+.+|+++... .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 34 34555556655 23333 777888888877543 34433334445567777777777777775543
Q ss_pred C-----CC---CC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 011378 374 E-----GV---DP-DSISYNTLINGFVREENMDKAFALVSKMENQ 409 (487)
Q Consensus 374 ~-----g~---~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 409 (487)
. .. .| |..+...+|......|+ +|.++++++++.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 2 11 13 34455344444444555 667777777664
No 87
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.60 E-value=0.00011 Score=72.07 Aligned_cols=365 Identities=10% Similarity=0.029 Sum_probs=163.9
Q ss_pred CChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCC-hhhHHHHHHHHHH-CCCCC-CHHHHHHHHHHHHc----cCCh
Q 011378 44 GFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGR-CDRAKEVLDEMLQ-MGLSP-DTATYNTLLVESCR----KENM 116 (487)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~-~g~~~-~~~~~~~ll~~~~~----~~~~ 116 (487)
++++.+..+|+..... .|+...|...++-..+.++ .+....+|+.... .|..| +...|...+.-+-. .+++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7778888888776553 4677777777776666553 3556666766543 24333 45566666554321 2456
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011378 117 SEAEEIFCEMSRRGVAPDIVSFSTLIGIFS---RNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMR 193 (487)
Q Consensus 117 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 193 (487)
+.+.++|+..... |.. ....+-..|. +..+...+..+..+. . +....|..++
T Consensus 106 ~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~~~-------------------~--~~y~~ar~~y 160 (493)
T 2uy1_A 106 EKIRNGYMRALQT---PMG-SLSELWKDFENFELELNKITGKKIVGDT-------------------L--PIFQSSFQRY 160 (493)
T ss_dssp HHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHHCHHHHHHHHHHH-------------------H--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHhccccHHHHHHHH-------------------h--HHHHHHHHHH
Confidence 6666677666652 211 1111111111 111112222222111 0 1122233333
Q ss_pred HHHHHcCCcCChhhHHHHHHHHHhcC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 194 DEMLEKGCVMDVVTYNTILNGLCRAK--M-----LTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIM 266 (487)
Q Consensus 194 ~~m~~~g~~~~~~~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 266 (487)
++....--..+...|...+.--...+ . .+.+..+|+++... .+.++..|...+.-+.+.|+++.|..+|+..
T Consensus 161 ~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erA 239 (493)
T 2uy1_A 161 QQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERG 239 (493)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32221000012234444333322111 0 23455667766653 2344566666666667777777777777766
Q ss_pred HHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 011378 267 TQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLV 346 (487)
Q Consensus 267 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 346 (487)
... |....... .|......++. +..+...-. . ...+.+ ... .......
T Consensus 240 i~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~---------------~-~~~~~~-----~~~--~~~~~~~ 287 (493)
T 2uy1_A 240 IEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYS---------------M-GEAESA-----EKV--FSKELDL 287 (493)
T ss_dssp HHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC---------------------------------CHHHHHH
T ss_pred HhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHH---------------h-hccchh-----hhh--cccccHH
Confidence 655 33221111 12221111111 111111000 0 000000 000 0000113
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH--HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011378 347 SCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYN--TLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTG 424 (487)
Q Consensus 347 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (487)
.|...++...+.++.+.|..+|+.....+ ++...|. +.+.... .++.+.|..+|+...+.. .-+...|...++.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 34445555555566666777766661111 1222222 2222211 224666777776654431 1122334555565
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 425 FCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 425 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
..+.|+.+.|+.+|++. ......|...+..-...|+.+.+.+++++..
T Consensus 364 e~~~~~~~~aR~l~er~-----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL-----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHTCHHHHHHHHHHS-----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56667777777777664 1245566666666666677777766666655
No 88
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.56 E-value=9.3e-06 Score=70.68 Aligned_cols=130 Identities=16% Similarity=0.038 Sum_probs=76.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CeeehHHHH
Q 011378 204 DVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKP-DIVTYNTLI 282 (487)
Q Consensus 204 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li 282 (487)
|+..|...-..+.+.|++++|.+.|++..+..-.++...+..+-..+...|++++|+..|+...+. .| +...+..+-
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 445666666667777777777777777766543356666666666677777777777777665543 22 234555666
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCC-h-------hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 283 DGFCKVGEMEKANKLWADMISRKISPN-Y-------ISYGILINGYCSMGHVTEAFRLWYEMV 337 (487)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-~-------~t~~~li~~~~~~~~~~~a~~~~~~m~ 337 (487)
..|...|++++|...+++..... |+ . ..|..+-..+...|++++|...|+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 66666666666666666655432 22 2 224444444445555555555555543
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.56 E-value=4.3e-06 Score=76.08 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCC----CCCC-e
Q 011378 207 TYNTILNGLCRAKMLTEADDLFNEMLER----GVFP-DFYTFTTLIHGHCKD-GNMNKALNLFDIMTQKS----IKPD-I 275 (487)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~t~~~li~~~~~~-g~~~~a~~~~~~m~~~~----~~~~-~ 275 (487)
+|+.+-..|.+.|++++|...|++..+. |-.. -..+++.+-..|... |++++|+..|+...+.. -.+. .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4455555555555555555555544321 1000 022444455555553 55555555554433210 0000 1
Q ss_pred eehHHHHHHHHccCCHHHHHHHHHHHHh
Q 011378 276 VTYNTLIDGFCKVGEMEKANKLWADMIS 303 (487)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (487)
.+++.+-..+.+.|++++|...|.+...
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2344444444455555555555544443
No 90
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.56 E-value=4.1e-06 Score=85.72 Aligned_cols=159 Identities=14% Similarity=0.098 Sum_probs=77.6
Q ss_pred eehHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011378 276 VTYNTLIDGFCKVGEMEKANKLWADMISRKISP-NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKG 354 (487)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 354 (487)
..|+.|-..|.+.|++++|.+.|++..+. .| +...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-.+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34555555555555555555555554432 22 23445555555555555555555555544321 1123445555555
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChH
Q 011378 355 YCRSGDASKADEFLSKMVSEGVDPD-SISYNTLINGFVREENMDKAFALVSKMENQGLVPD-VITYNVILTGFCRQGRMH 432 (487)
Q Consensus 355 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 432 (487)
|...|+.++|.+.+++..+. .|+ ...|+.|-..|...|++++|.+.+++..+. .|+ ...|..+...+...|+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 55555555555555554432 232 334555555555555555555555544332 232 334445555555555555
Q ss_pred HHHHHHHHH
Q 011378 433 DSELILWRM 441 (487)
Q Consensus 433 ~a~~~~~~m 441 (487)
+|...+++.
T Consensus 163 ~A~~~~~ka 171 (723)
T 4gyw_A 163 DYDERMKKL 171 (723)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544444
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.54 E-value=7e-06 Score=74.71 Aligned_cols=204 Identities=13% Similarity=0.075 Sum_probs=130.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhcCCHHHHH
Q 011378 116 MSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSA----GLVPD-NVLYTIIINGYCRNGFVLEAL 190 (487)
Q Consensus 116 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~~~~~~a~ 190 (487)
+++|...+++. ...|...|++++|...|++.... |-.++ ..+|+.+-..|.+.|+.++|.
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 66666666554 34566777777777777765432 21122 346777777777888888887
Q ss_pred HHHHHHHHc----CCcC-ChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHHhcCCHHHH
Q 011378 191 KMRDEMLEK----GCVM-DVVTYNTILNGLCRA-KMLTEADDLFNEMLERG----VFPD-FYTFTTLIHGHCKDGNMNKA 259 (487)
Q Consensus 191 ~~~~~m~~~----g~~~-~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~----~~~~-~~t~~~li~~~~~~g~~~~a 259 (487)
..+++..+. |-.. -..+|+.+-..|... |+++.|...|++..+.. -.+. ..++..+...+.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 777665432 2111 134677888888886 99999999998876531 1111 35688888999999999999
Q ss_pred HHHHHHHHHCCCCCCee------ehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHH--hcCC
Q 011378 260 LNLFDIMTQKSIKPDIV------TYNTLIDGFCKVGEMEKANKLWADMISRKISPNY------ISYGILINGYC--SMGH 325 (487)
Q Consensus 260 ~~~~~~m~~~~~~~~~~------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~t~~~li~~~~--~~~~ 325 (487)
+..|+...+........ .|..+..++...|++++|...|++... +.|+. ..+..++.+|. ..++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 99999887654332221 456667778888999999988887653 23332 12344555554 3456
Q ss_pred HHHHHHHHHHH
Q 011378 326 VTEAFRLWYEM 336 (487)
Q Consensus 326 ~~~a~~~~~~m 336 (487)
+++|...|+.+
T Consensus 256 ~~~A~~~~~~~ 266 (292)
T 1qqe_A 256 LSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHhccC
Confidence 67777666544
No 92
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.53 E-value=1e-05 Score=70.40 Aligned_cols=192 Identities=11% Similarity=0.045 Sum_probs=140.9
Q ss_pred CeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011378 274 DIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIK 353 (487)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 353 (487)
|...+...-..+.+.|++++|...|.........++...+..+..++...|++++|...++...... +.+...|..+-.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3456677778888999999999999988876544677777778899999999999999999887643 234567888888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-h-------hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HhhHHHHH
Q 011378 354 GYCRSGDASKADEFLSKMVSEGVDPD-S-------ISYNTLINGFVREENMDKAFALVSKMENQGLVPD---VITYNVIL 422 (487)
Q Consensus 354 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li 422 (487)
.|...|+.++|...+++..+.. |+ . ..|..+-..+...|++++|.+.+++..+. .|+ ...|..+-
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999887643 43 3 34677777788899999999999987653 565 45566666
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 423 TGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQ 478 (487)
Q Consensus 423 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~ 478 (487)
..|...| ..+++++...+ ..+...|...... ..+.+++|...+++-.+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~~--~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEKAK--ADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHHH--HHHHHHHHHHHHHHHhh
Confidence 6665443 34445554432 2345556555433 34668999999988875
No 93
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.50 E-value=8.2e-06 Score=83.55 Aligned_cols=159 Identities=16% Similarity=0.122 Sum_probs=75.8
Q ss_pred cchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHhHHHHHHH
Q 011378 66 FTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPD-TATYNTLLVESCRKENMSEAEEIFCEMSRRGVAP-DIVSFSTLIG 143 (487)
Q Consensus 66 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~ 143 (487)
..|+.+-..+.+.|++++|.+.|++..+. .|+ ...|+.+-..+.+.|++++|.+.|++..+. .| +...|..+-.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 44555555555555666555555555442 232 344555555555555555555555555442 22 2344555555
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHH
Q 011378 144 IFSRNGQLDRALMYFREMKSAGLVPD-NVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLT 222 (487)
Q Consensus 144 ~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 222 (487)
++.+.|++++|++.|++..+. .|+ ...|+.+-..|.+.|+.++|.+.+++..+.. +-+...|..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 555555555555555554432 222 3344444444444455555444444443321 112233444444444444444
Q ss_pred HHHHHHHHH
Q 011378 223 EADDLFNEM 231 (487)
Q Consensus 223 ~a~~~~~~m 231 (487)
+|.+.+++.
T Consensus 163 ~A~~~~~ka 171 (723)
T 4gyw_A 163 DYDERMKKL 171 (723)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 94
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.49 E-value=0.0004 Score=67.92 Aligned_cols=368 Identities=11% Similarity=0.028 Sum_probs=207.3
Q ss_pred CChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHhh-CCCCC-CccchHHHHHHHH----hcCCh
Q 011378 9 HKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGF-LEEAFQLMNSMSG-KGLKP-GVFTYNSLINGLC----KKGRC 81 (487)
Q Consensus 9 ~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~-~~~~p-~~~~~~~li~~~~----~~~~~ 81 (487)
+.++.+..+|++.... .|+...|..-++-..+.++ .+....+|+.... -|..| +...|...+.-+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6788888999887763 4899999998888877764 4567778887655 35434 4566776666543 34678
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 011378 82 DRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREM 161 (487)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 161 (487)
+.+.++|++.......--...|..... +-+..+...+.++..+. . +.+..|..+++..
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~-------------------~--~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKIVGDT-------------------L--PIFQSSFQRYQQI 163 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHH-------------------H--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHHHHHH-------------------h--HHHHHHHHHHHHH
Confidence 899999999887321111122222211 11111222333332221 1 1233344444444
Q ss_pred HHCCCCCChhhHHHHHHHHHhcC--C-----HHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011378 162 KSAGLVPDNVLYTIIINGYCRNG--F-----VLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLER 234 (487)
Q Consensus 162 ~~~g~~~~~~~~~~ll~~~~~~~--~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (487)
...--..+...|...++---..+ . ...+..++++.... ++.+...|-..+.-+.+.|+++.|..++++....
T Consensus 164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 32100013345665555433221 1 23456678877764 3455677888888888999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHH
Q 011378 235 GVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYG 314 (487)
Q Consensus 235 ~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~ 314 (487)
+.+...|. .|+...+.++ +++.+.+ .+... ..+.+.. . . .......|.
T Consensus 243 --P~~~~l~~----~y~~~~e~~~---~~~~l~~---------------~~~~~-~~~~~~~-----~-~-~~~~~~lw~ 290 (493)
T 2uy1_A 243 --SDGMFLSL----YYGLVMDEEA---VYGDLKR---------------KYSMG-EAESAEK-----V-F-SKELDLLRI 290 (493)
T ss_dssp --CCSSHHHH----HHHHHTTCTH---HHHHHHH---------------HTC-----------------C-HHHHHHHHH
T ss_pred --CCcHHHHH----HHHhhcchhH---HHHHHHH---------------HHHhh-ccchhhh-----h-c-ccccHHHHH
Confidence 33332222 2222211111 1222221 11000 0000000 0 0 001123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHh
Q 011378 315 ILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCN--TIIKGYCRSGDASKADEFLSKMVSEGVDPD-SISYNTLINGFV 391 (487)
Q Consensus 315 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~ 391 (487)
..+....+.+..+.|..+|+.. +.. ..+...|. +.+.... .++.+.|..+++...+.- |+ ...+...++-..
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
Confidence 5566666677788888888877 211 12333332 2222222 346889999998877642 32 334555666667
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 392 REENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 392 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
+.|+.+.|..++++.. .....|...+..=.+.|+.+.+..++++...
T Consensus 366 ~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 366 RIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7899999999998862 2567788888877888999999998888763
No 95
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.41 E-value=6.3e-06 Score=75.60 Aligned_cols=95 Identities=13% Similarity=-0.022 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCCCH-h
Q 011378 347 SCNTIIKGYCRSGDASKADEFLSKMVSE----GVDPD-SISYNTLINGFVREENMDKAFALVSKMEN----QGLVPDV-I 416 (487)
Q Consensus 347 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~-~ 416 (487)
+++.+-..|.. |++++|...+++..+. |-.+. ..++..+-..|.+.|++++|...+++..+ .+..+.. .
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 34444444444 5555555555544321 10000 23444555555555555555555554432 1111111 1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 417 TYNVILTGFCRQGRMHDSELILWRMI 442 (487)
Q Consensus 417 ~~~~li~~~~~~g~~~~a~~~~~~m~ 442 (487)
.+..+...+...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34444444455556666655555544
No 96
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.34 E-value=2.2e-05 Score=71.94 Aligned_cols=199 Identities=10% Similarity=-0.020 Sum_probs=102.5
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011378 113 KENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKM 192 (487)
Q Consensus 113 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 192 (487)
.|++++|.+++++..+.-- .+ .+...++++.|...|++. ...|...|+.++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4667788888876654211 00 011135566666555543 2345566666666666
Q ss_pred HHHHHHc----CCcC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 011378 193 RDEMLEK----GCVM-DVVTYNTILNGLCRAKMLTEADDLFNEMLER----GVFP-DFYTFTTLIHGHCKDGNMNKALNL 262 (487)
Q Consensus 193 ~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~t~~~li~~~~~~g~~~~a~~~ 262 (487)
+.+..+. |-.. -..+|+.+...|.+.|++++|...|++..+. |-.. -..++..+-..|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 5554321 1111 1235666666677777777777777665432 1111 12455566666666 777777776
Q ss_pred HHHHHHC----CCCC-CeeehHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCh-hhHHHHHHHHHhcCCHHHHHHH
Q 011378 263 FDIMTQK----SIKP-DIVTYNTLIDGFCKVGEMEKANKLWADMISR----KISPNY-ISYGILINGYCSMGHVTEAFRL 332 (487)
Q Consensus 263 ~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~t~~~li~~~~~~~~~~~a~~~ 332 (487)
|+...+. +-.+ ...+++.+-..|.+.|++++|...|.+.... +..+.. ..+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6654321 1100 0234555556666666666666666554431 111111 1344444455555666666666
Q ss_pred HHHHH
Q 011378 333 WYEMV 337 (487)
Q Consensus 333 ~~~m~ 337 (487)
|++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66554
No 97
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.32 E-value=0.00021 Score=64.78 Aligned_cols=161 Identities=11% Similarity=-0.007 Sum_probs=83.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-CCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hhhHHHH
Q 011378 317 INGYCSMGHVTEAFRLWYEMVGKG-IKPTL----VSCNTIIKGYCRSGDASKADEFLSKMVSEGVD-PD----SISYNTL 386 (487)
Q Consensus 317 i~~~~~~~~~~~a~~~~~~m~~~~-~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~l 386 (487)
+..+...|++++|..+++...... ..|+. ..+..+...+...++.++|...+++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 444555555666655555554321 11121 11223334444555666666666665542211 22 1245666
Q ss_pred HHHHhccCCHHHHHHHHHHHHh----C-CCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HHHHHH
Q 011378 387 INGFVREENMDKAFALVSKMEN----Q-GLVPDV-ITYNVILTGFCRQGRMHDSELILWRMIE----KGLNPD-RSTYTT 455 (487)
Q Consensus 387 i~~~~~~~~~~~a~~~~~~m~~----~-g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~ty~~ 455 (487)
-..|...|++++|...+++..+ . +..+.. .+|..+...|.+.|++++|...+++..+ .+-.+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6666666666666666655542 1 111221 2566666667777777777766666542 222222 446666
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHH
Q 011378 456 LINGHVSQN-NLKEAFRFHDEML 477 (487)
Q Consensus 456 l~~~~~~~~-~~~~a~~~~~~m~ 477 (487)
+-..|...| ++++|.+.+++-.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 666777777 3577766666544
No 98
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.29 E-value=0.00018 Score=65.28 Aligned_cols=160 Identities=9% Similarity=0.001 Sum_probs=81.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-CCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc-CC----hhhHHH
Q 011378 141 LIGIFSRNGQLDRALMYFREMKSAG-LVPDNV----LYTIIINGYCRNGFVLEALKMRDEMLEKGCV-MD----VVTYNT 210 (487)
Q Consensus 141 li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~ 210 (487)
.+..+.+.|++++|..++++..... ..|+.. .+..+...+...++.++|...+++..+.... .+ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556667777777777777765522 122211 2223444444555666666666666552221 12 124666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-eeehH
Q 011378 211 ILNGLCRAKMLTEADDLFNEMLER-----GVFPD-FYTFTTLIHGHCKDGNMNKALNLFDIMTQ----KSIKPD-IVTYN 279 (487)
Q Consensus 211 li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~-~~~~~ 279 (487)
+...|...|+++.|...|++..+. +..+. ..++..+...|.+.|++++|+..++...+ .+..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 666666667777776666666531 11111 23555666666666666666666654332 111111 23444
Q ss_pred HHHHHHHccCC-HHHHHHHHHH
Q 011378 280 TLIDGFCKVGE-MEKANKLWAD 300 (487)
Q Consensus 280 ~li~~~~~~g~-~~~a~~~~~~ 300 (487)
.+-..|.+.|+ .++|.+.+.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHH
Confidence 45555555553 3555555543
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.24 E-value=8.1e-05 Score=66.20 Aligned_cols=182 Identities=10% Similarity=0.064 Sum_probs=97.5
Q ss_pred ehHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-ChhhHHHHH
Q 011378 277 TYNTLIDGFCKVGEMEKANKLWADMISRKISP-N-YISYGILINGYCSMGHVTEAFRLWYEMVGKGI-KP-TLVSCNTII 352 (487)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~-~~~~~~~li 352 (487)
.+-.+-..+.+.|++++|...|.......... . ...+..+..+|...|++++|...|+...+..- .| ....+..+-
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 34445555666777777777777766542111 0 34556666667777777777777776665321 11 123444455
Q ss_pred HHHHh--------cCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011378 353 KGYCR--------SGDASKADEFLSKMVSEGVDPDS-ISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILT 423 (487)
Q Consensus 353 ~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (487)
.++.. .|+.++|...+++..+.. |+. .....+. .+...... -...+-.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~~~~~la~ 156 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LARKQYEAAR 156 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHHHHHHHHH
Confidence 55555 666777777776665432 322 1111110 00000000 0001244455
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHH
Q 011378 424 GFCRQGRMHDSELILWRMIEKGLN-P-DRSTYTTLINGHVSQ----------NNLKEAFRFHDEMLQ 478 (487)
Q Consensus 424 ~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~ty~~l~~~~~~~----------~~~~~a~~~~~~m~~ 478 (487)
.|.+.|++++|...|++.....-. | ....+..+..+|... |++++|...+++.++
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 677777777777777777654211 1 234555566666644 777778777777764
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.23 E-value=0.00011 Score=63.21 Aligned_cols=126 Identities=13% Similarity=0.065 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCcCChhhHHHH
Q 011378 136 VSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNG----FVLEALKMRDEMLEKGCVMDVVTYNTI 211 (487)
Q Consensus 136 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~g~~~~~~~~~~l 211 (487)
..+..+-..|...+++++|.+.|++..+.| +...+..|-..|.. + +.++|.+.+++..+.| +...+..|
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~L 91 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVL 91 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 334444444444445555555544444432 22233333333333 3 4444444444444333 22333444
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 011378 212 LNGLCR----AKMLTEADDLFNEMLERGVF-PDFYTFTTLIHGHCK----DGNMNKALNLFDIMTQ 268 (487)
Q Consensus 212 i~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~ 268 (487)
-..|.. .++++.|.+.|++..+.|.. .++..+..|-..|.. .++.++|+..|+...+
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 444443 44555555555555443311 013444444444444 4455555555554443
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.22 E-value=0.00035 Score=59.90 Aligned_cols=164 Identities=12% Similarity=0.026 Sum_probs=87.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCChhhHH
Q 011378 309 NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSG----DASKADEFLSKMVSEGVDPDSISYN 384 (487)
Q Consensus 309 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~ 384 (487)
+...+..|-..|...+++++|+..|+.....| +...+..|-..|.. + +.++|.+.+++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44445555555555566666666666555543 33444444444444 4 5666666666665543 334444
Q ss_pred HHHHHHhc----cCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 011378 385 TLINGFVR----EENMDKAFALVSKMENQGLV-PDVITYNVILTGFCR----QGRMHDSELILWRMIEKGLNPDRSTYTT 455 (487)
Q Consensus 385 ~li~~~~~----~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~ 455 (487)
.|-..|.. .+++++|.+.+++..+.|-. ..+..+..|-..|.. .+++++|...|++..+. ..+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 55555554 56666666666665554311 014455555555555 56666666666666554 123334455
Q ss_pred HHHHHHhc-C-----CHHHHHHHHHHHHHCCC
Q 011378 456 LINGHVSQ-N-----NLKEAFRFHDEMLQRGF 481 (487)
Q Consensus 456 l~~~~~~~-~-----~~~~a~~~~~~m~~~g~ 481 (487)
|-..|... | ++++|...+++-.+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 55555432 2 66667666666655553
No 102
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.21 E-value=6.5e-05 Score=66.82 Aligned_cols=97 Identities=11% Similarity=-0.020 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC-hhhH
Q 011378 100 TATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPD----IVSFSTLIGIFSRNGQLDRALMYFREMKSAGL-VPD-NVLY 173 (487)
Q Consensus 100 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~-~~~~ 173 (487)
...+-.+-..+.+.|++++|...|+++.+.. |+ ...+..+..++.+.|++++|...|++..+... .|. ...+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3444444455556666666666666665532 21 34455555666666666666666666655321 111 2234
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHH
Q 011378 174 TIIINGYCR--------NGFVLEALKMRDEMLE 198 (487)
Q Consensus 174 ~~ll~~~~~--------~~~~~~a~~~~~~m~~ 198 (487)
..+-.++.+ .|+.++|...+++..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 444444444 5555555555555544
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.15 E-value=0.00031 Score=60.82 Aligned_cols=178 Identities=13% Similarity=0.007 Sum_probs=107.0
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHH
Q 011378 278 YNTLIDGFCKVGEMEKANKLWADMISRKIS-PN-YISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLV----SCNTI 351 (487)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l 351 (487)
+..+...+.+.|++++|...|.++...... |. ...+..+..++...|++++|...|+...+.. |+.. .+-.+
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHH
Confidence 344556677788888888888887764321 21 2456677788888888888888888876542 3221 22223
Q ss_pred HHHHHh------------------cCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 011378 352 IKGYCR------------------SGDASKADEFLSKMVSEGVDPDSI-SYNTLINGFVREENMDKAFALVSKMENQGLV 412 (487)
Q Consensus 352 i~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 412 (487)
-.++.. .|+.++|...+++..+. .|+.. .+..+.. ...+...+.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~----- 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH-----
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH-----
Confidence 333332 34555566666555542 23321 1111100 000000000
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011378 413 PDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR----STYTTLINGHVSQNNLKEAFRFHDEMLQR 479 (487)
Q Consensus 413 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~ty~~l~~~~~~~~~~~~a~~~~~~m~~~ 479 (487)
...-.+...|.+.|++++|...|+++.+. .|+. ..+..+..+|.+.|++++|.+.++.+...
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 01123455778899999999999998764 3432 46778889999999999999999988765
No 104
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.14 E-value=0.00037 Score=63.12 Aligned_cols=121 Identities=12% Similarity=-0.031 Sum_probs=55.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCC---CCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCC--CHhhHHHHH
Q 011378 354 GYCRSGDASKADEFLSKMVSEGV---DPD--SISYNTLINGFVREENMDKAFALVSKMEN----QGLVP--DVITYNVIL 422 (487)
Q Consensus 354 ~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p--~~~~~~~li 422 (487)
.+...|+.++|...+++...... .+. ..+|+.+-..|...|++++|...+++..+ .+-.+ ...+|..+.
T Consensus 124 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg 203 (293)
T 2qfc_A 124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA 203 (293)
T ss_dssp HHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHH
Confidence 34444555555555555443211 111 22455555555555555555555554431 11111 113455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHH-HHHHH
Q 011378 423 TGFCRQGRMHDSELILWRMIEK----GLNPD-RSTYTTLINGHVSQNNLKEA-FRFHD 474 (487)
Q Consensus 423 ~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~ty~~l~~~~~~~~~~~~a-~~~~~ 474 (487)
..|.+.|++++|...+++..+. +.... ..+|..+-..|...|++++| ...++
T Consensus 204 ~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 5555666666665555554321 11111 34555555555556666555 44343
No 105
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.12 E-value=0.00052 Score=62.16 Aligned_cols=125 Identities=11% Similarity=0.058 Sum_probs=62.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCC---CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCcC--ChhhHH
Q 011378 141 LIGIFSRNGQLDRALMYFREMKSAGLV---PD--NVLYTIIINGYCRNGFVLEALKMRDEMLE----KGCVM--DVVTYN 209 (487)
Q Consensus 141 li~~~~~~g~~~~a~~~~~~m~~~g~~---~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~g~~~--~~~~~~ 209 (487)
+...+...|++++|+..+++....... +. ..+|+.+-..|...|+.++|...+++..+ .+..+ ...+|+
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 333444555555555555554432111 11 22455555555555555555555555431 11111 113555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHH
Q 011378 210 TILNGLCRAKMLTEADDLFNEMLER----GVFP-DFYTFTTLIHGHCKDGNMNKA-LNLFDI 265 (487)
Q Consensus 210 ~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~t~~~li~~~~~~g~~~~a-~~~~~~ 265 (487)
.+...|.+.|++++|...+++..+. +... -..+|..+-..|.+.|+.++| ...++.
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 6666666666666666666655432 1111 144566666666666666666 554543
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.10 E-value=9.6e-05 Score=66.90 Aligned_cols=166 Identities=10% Similarity=0.030 Sum_probs=117.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 011378 307 SPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTL 386 (487)
Q Consensus 307 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 386 (487)
+.+...+..+-..+...|++++|...++...... +-+...+..+-..+.+.|+.++|...++..... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3344566677777888888888888888876542 335567777888888889999988888876543 3554432222
Q ss_pred H-HHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhc
Q 011378 387 I-NGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLN-PDRSTYTTLINGHVSQ 463 (487)
Q Consensus 387 i-~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~ty~~l~~~~~~~ 463 (487)
. ..+...++.+.|...+++.... .| +...+..+...+.+.|++++|...+.+.....-. .+...+..+...+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 2 2355667777777777766553 34 4667788888888999999999888888765321 1256788888888888
Q ss_pred CCHHHHHHHHHHHH
Q 011378 464 NNLKEAFRFHDEML 477 (487)
Q Consensus 464 ~~~~~a~~~~~~m~ 477 (487)
|+.++|...+++-+
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 88888887776644
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.10 E-value=0.00077 Score=58.31 Aligned_cols=62 Identities=11% Similarity=0.069 Sum_probs=36.4
Q ss_pred hHHHHHHHHhcCChhhHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 011378 68 YNSLINGLCKKGRCDRAKEVLDEMLQMGL-SPD-TATYNTLLVESCRKENMSEAEEIFCEMSRR 129 (487)
Q Consensus 68 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 129 (487)
+-.+-..+.+.|++++|...|+++.+..- .|. ...+..+..++.+.|++++|...|++..+.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33444556667777777777777665321 111 234555566666777777777777766543
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.09 E-value=4e-05 Score=63.63 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=31.2
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 415 VITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQNNLKEAFRFHDEM 476 (487)
Q Consensus 415 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~l~~~~~~~~~~~~a~~~~~~m 476 (487)
...+..+...+.+.|++++|...|++.....-.+ +...+..+...+...|+.++|...+++.
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 4445555555555555555555555554432211 1334555555555555555555555543
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.09 E-value=0.00025 Score=60.59 Aligned_cols=124 Identities=11% Similarity=-0.038 Sum_probs=70.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011378 280 TLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSG 359 (487)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 359 (487)
.+-..+...|++++|...|.+. +.|+...|..+...+...|++++|...++...... +.+...+..+-..|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 3444555666666666666544 24555666666666666666666666666655432 234455666666666666
Q ss_pred ChHHHHHHHHHHHHCCCC--------------CC-hhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 360 DASKADEFLSKMVSEGVD--------------PD-SISYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 360 ~~~~a~~~~~~m~~~g~~--------------p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
+.++|...+++..+..-. |+ ...+..+-..|.+.|++++|.+.+++..+
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666666666543211 11 13445555555566666666666655544
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.08 E-value=0.00012 Score=73.36 Aligned_cols=153 Identities=8% Similarity=0.000 Sum_probs=110.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 011378 288 VGEMEKANKLWADMISRKISP-NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADE 366 (487)
Q Consensus 288 ~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 366 (487)
.|++++|...+++.... .| +...+..+-..+...|++++|...+++..+.. +.+...+..+-..|...|+.++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999999877543 34 46788889999999999999999999987653 3356788888899999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CChHHHHHHHHHHHH
Q 011378 367 FLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQ---GRMHDSELILWRMIE 443 (487)
Q Consensus 367 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~ 443 (487)
.+++..+.. +.+...+..+-..|.+.|++++|.+.+++..+.. ..+...+..+...+... |+.++|...+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999987643 2246688888999999999999999999886642 22467788888899999 999999999999877
Q ss_pred cC
Q 011378 444 KG 445 (487)
Q Consensus 444 ~g 445 (487)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 54
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.04 E-value=0.00011 Score=66.57 Aligned_cols=161 Identities=11% Similarity=-0.017 Sum_probs=86.8
Q ss_pred HhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHH-H
Q 011378 135 IVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVP-DNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTI-L 212 (487)
Q Consensus 135 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-i 212 (487)
...+..+...+.+.|++++|...|++.... .| +...+..+...+.+.|+.++|...+++.... .|+....... .
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 334445555666666777776666666543 23 2345555666666666666666666655432 2332222111 1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CeeehHHHHHHHHccCCH
Q 011378 213 NGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKP-DIVTYNTLIDGFCKVGEM 291 (487)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~ 291 (487)
..+.+.+..+.|...+++..+.. +.+...+..+-..+...|+.++|+..|+...+..-.. +...+..+...|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 22444555555666666655432 2345566666666666666666666666555432111 133556666666666666
Q ss_pred HHHHHHHHH
Q 011378 292 EKANKLWAD 300 (487)
Q Consensus 292 ~~a~~~~~~ 300 (487)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 666555544
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.04 E-value=0.0004 Score=59.31 Aligned_cols=124 Identities=15% Similarity=-0.039 Sum_probs=65.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCC
Q 011378 141 LIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKM 220 (487)
Q Consensus 141 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 220 (487)
+...+.+.|++++|...|++. +.|+...|..+-..+.+.|+.++|...+++..+.. +.+...|..+..+|.+.|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 334444555555555555543 23444555555555555555555555555544432 2234455555556666666
Q ss_pred HHHHHHHHHHHHHcC--------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011378 221 LTEADDLFNEMLERG--------------VFP-DFYTFTTLIHGHCKDGNMNKALNLFDIMTQK 269 (487)
Q Consensus 221 ~~~a~~~~~~m~~~~--------------~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 269 (487)
+++|.+.|++..+.. ..| ....+..+-..|...|+.++|...|+...+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666555421 111 1245566666666777777777776665543
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.03 E-value=0.00017 Score=72.34 Aligned_cols=152 Identities=14% Similarity=0.024 Sum_probs=111.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011378 253 DGNMNKALNLFDIMTQKSIKP-DIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFR 331 (487)
Q Consensus 253 ~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~ 331 (487)
.|+.++|+..|+...+. .| +...+..+-..+.+.|++++|...+++..+.. +.+...+..+...|...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999999876543 34 35678888899999999999999999887642 2356788899999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc---CCHHHHHHHHHHHHh
Q 011378 332 LWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVRE---ENMDKAFALVSKMEN 408 (487)
Q Consensus 332 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~ 408 (487)
.++...+.. +.+...+..+-..|.+.|+.++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999987653 3456788889999999999999999999987653 22466788889999999 999999999998876
Q ss_pred C
Q 011378 409 Q 409 (487)
Q Consensus 409 ~ 409 (487)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 4
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.00 E-value=6.4e-05 Score=62.38 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CeeehHHHHHHHHccCCHHHHHHHHH
Q 011378 240 FYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKP-DIVTYNTLIDGFCKVGEMEKANKLWA 299 (487)
Q Consensus 240 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (487)
...+..+-..+...|+.++|...|+...+....+ +...+..+...+...|+.++|...|+
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 3444444444555555555555554444332211 12234444444444444444444444
No 115
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.00 E-value=0.00012 Score=74.94 Aligned_cols=150 Identities=9% Similarity=-0.047 Sum_probs=73.5
Q ss_pred HccCCHHHHHHHHHHHHh------CCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011378 286 CKVGEMEKANKLWADMIS------RKI-SPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRS 358 (487)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~------~~~-~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 358 (487)
...|++++|.+.+++... ... +.+...+..+..++...|++++|...++...+.. +.+...|..+-.+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 445555555555555441 011 2233445555555555555555555555554321 22334454555555555
Q ss_pred CChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChHHHHH
Q 011378 359 GDASKADEFLSKMVSEGVDP-DSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSEL 436 (487)
Q Consensus 359 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~ 436 (487)
|++++|...|++..+.. | +...+..+-.+|.+.|++++ .+.+++..+. .| +...|..+-..+.+.|++++|..
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555554322 2 23344555555555555555 5555544332 22 23445555555555555555555
Q ss_pred HHHHH
Q 011378 437 ILWRM 441 (487)
Q Consensus 437 ~~~~m 441 (487)
.|++.
T Consensus 556 ~~~~a 560 (681)
T 2pzi_A 556 TLDEV 560 (681)
T ss_dssp HHHTS
T ss_pred HHHhh
Confidence 55543
No 116
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.00 E-value=0.00021 Score=61.11 Aligned_cols=162 Identities=14% Similarity=0.067 Sum_probs=101.3
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCC-hhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 011378 283 DGFCKVGEMEKANKLWADMISRKISPN-YISYGI----------------LINGYCSMGHVTEAFRLWYEMVGKGIKPTL 345 (487)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~----------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 345 (487)
..+...|++++|...|.+.... .|+ ...|.. +-.+|...|++++|...|+...+.. +-+.
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 88 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNV 88 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 4567789999999999887654 343 334555 7777788888888888888776543 3356
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCC--HHHHHHHHHHHHhCCCCCCHhh--HHH
Q 011378 346 VSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD-SISYNTLINGFVREEN--MDKAFALVSKMENQGLVPDVIT--YNV 420 (487)
Q Consensus 346 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~--~~~ 420 (487)
..+..+-..|...|+.++|...+++..+. .|+ ...+..+-..|...++ .+.+...+... +.|+... +..
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~ 162 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKL----SSPTKMQYARYR 162 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----hCCCchhHHHHH
Confidence 67777777888888888888888887763 343 4566666666654443 23333333332 2344332 222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 011378 421 ILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTT 455 (487)
Q Consensus 421 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ 455 (487)
.-.++...|++++|...|++..+ +.|+......
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 33344557788888888887653 4676544333
No 117
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.99 E-value=8.9e-05 Score=62.78 Aligned_cols=156 Identities=10% Similarity=-0.051 Sum_probs=92.4
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-ChhhHHHHHHHHHhcCC
Q 011378 286 CKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVG----KGIKP-TLVSCNTIIKGYCRSGD 360 (487)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~~~ 360 (487)
...|++++|.+.++.... ........+..+-..+...|++++|...+++... .+..| ...++..+-..|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 456788888884444332 1123456677777788888888888888877654 22222 23456666677777888
Q ss_pred hHHHHHHHHHHHHC----CCCC--ChhhHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCC-CHhhHHHHHHHHHhcC
Q 011378 361 ASKADEFLSKMVSE----GVDP--DSISYNTLINGFVREENMDKAFALVSKMEN----QGLVP-DVITYNVILTGFCRQG 429 (487)
Q Consensus 361 ~~~a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~g 429 (487)
+++|...+++..+. +-.| ....+..+-..+...|++++|...+++..+ .+-.+ -..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88887777765532 2111 123466666777777777777777766542 11111 1123456666677777
Q ss_pred ChHHHHHHHHHHH
Q 011378 430 RMHDSELILWRMI 442 (487)
Q Consensus 430 ~~~~a~~~~~~m~ 442 (487)
++++|...+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777776666543
No 118
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.97 E-value=0.00035 Score=59.67 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=28.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 011378 106 LLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKS 163 (487)
Q Consensus 106 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 163 (487)
+-..+.+.|++++|...|++..+.. +-+...+..+-.++.+.|++++|...|++..+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444455555555555555554431 11344455555555555555555555555544
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.94 E-value=0.00032 Score=53.56 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 313 YGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMV 372 (487)
Q Consensus 313 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 372 (487)
+..+...+...|++++|...++...... +.+..++..+...+.+.|+.++|...++++.
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3334444444444444444444443321 1223333334444444444444444444433
No 120
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.94 E-value=0.00016 Score=61.19 Aligned_cols=131 Identities=12% Similarity=-0.079 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCc--CC
Q 011378 136 VSFSTLIGIFSRNGQLDRALMYFREMKS----AGLVP-DNVLYTIIINGYCRNGFVLEALKMRDEMLEK----GCV--MD 204 (487)
Q Consensus 136 ~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~--~~ 204 (487)
..+..+-..+...|++++|...+++... .+..| ....+..+-..+...|+.++|.+.+++..+. +-. ..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444455555555555555544432 11111 1223444444444555555554444433321 101 11
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 205 VVTYNTILNGLCRAKMLTEADDLFNEMLER----GVF-PDFYTFTTLIHGHCKDGNMNKALNLFDIM 266 (487)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~t~~~li~~~~~~g~~~~a~~~~~~m 266 (487)
...+..+-..+...|++++|.+.+++..+. +-. .-..++..+-..+...|++++|...++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 223455555556666666666666555421 100 01123445555566666666666555443
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.93 E-value=0.00042 Score=52.91 Aligned_cols=98 Identities=14% Similarity=0.224 Sum_probs=77.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011378 345 LVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTG 424 (487)
Q Consensus 345 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (487)
...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+.. ..+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4567777888888999999999998887643 2356678888888889999999999998886642 3356778888888
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 011378 425 FCRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 425 ~~~~g~~~~a~~~~~~m~~~ 444 (487)
+.+.|++++|...++++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999888764
No 122
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.91 E-value=0.00036 Score=71.43 Aligned_cols=173 Identities=9% Similarity=-0.089 Sum_probs=108.4
Q ss_pred HccCChhHHHHHHHHHHH------CCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 011378 111 CRKENMSEAEEIFCEMSR------RGVAP-DIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRN 183 (487)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~------~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 183 (487)
...+++++|.+.+++..+ ....| +...+..+...+.+.|++++|...|++..+.. .-+...|..+-.++.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 566777777777776651 01223 34456666677777777777777777766532 12345666677777777
Q ss_pred CCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011378 184 GFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLF 263 (487)
Q Consensus 184 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~ 263 (487)
|+.++|...|++..+.. +-+...|..+-.++.+.|++++ .+.|++..+.. +-+...|..+-.++.+.|+.++|+..|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777766542 1244566777777777788877 77777776543 235567777777788888888888777
Q ss_pred HHHHHCCCCCC-eeehHHHHHHHHccC
Q 011378 264 DIMTQKSIKPD-IVTYNTLIDGFCKVG 289 (487)
Q Consensus 264 ~~m~~~~~~~~-~~~~~~li~~~~~~g 289 (487)
+...+ +.|+ ...+..+..++...+
T Consensus 558 ~~al~--l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 558 DEVPP--TSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HTSCT--TSTTHHHHHHHHHHHTC---
T ss_pred Hhhcc--cCcccHHHHHHHHHHHHccC
Confidence 65543 2343 344555555554433
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.83 E-value=0.0007 Score=54.90 Aligned_cols=127 Identities=14% Similarity=0.111 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 011378 348 CNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCR 427 (487)
Q Consensus 348 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 427 (487)
+..+-..+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+.. ..+...|..+...+.+
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3344445555566666666665554422 1234455556666666666666666666554431 2234556666666667
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 428 QGRMHDSELILWRMIEKGLNPDRSTY--TTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 428 ~g~~~~a~~~~~~m~~~g~~p~~~ty--~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
.|++++|...+++..+..- .+...+ -.....+...|++++|.+.++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777766654321 122233 223333556677777777766543
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.80 E-value=0.00093 Score=54.13 Aligned_cols=127 Identities=8% Similarity=-0.051 Sum_probs=69.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 011378 312 SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFV 391 (487)
Q Consensus 312 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 391 (487)
.+..+...+...|++++|...|+...... +.+...+..+-..+...|++++|...+++..+.. +.+...+..+-..|.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34445555556666666666666554432 2244555556666666666666666666655432 123445666666666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhH--HHHHHHHHhcCChHHHHHHHHHH
Q 011378 392 REENMDKAFALVSKMENQGLVPDVITY--NVILTGFCRQGRMHDSELILWRM 441 (487)
Q Consensus 392 ~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m 441 (487)
..|++++|...+++..+.. ..+...+ -.....+.+.|++++|...+.+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6777777777766655431 1122233 22223355666777776666554
No 125
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.76 E-value=0.014 Score=52.74 Aligned_cols=216 Identities=11% Similarity=0.061 Sum_probs=102.5
Q ss_pred ChhHHHHHHHHHhhCCCCCCc-cchHHHHHHHHhcC--ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hcc---C
Q 011378 45 FLEEAFQLMNSMSGKGLKPGV-FTYNSLINGLCKKG--RCDRAKEVLDEMLQMGLSPDTATYNTLLVES----CRK---E 114 (487)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~----~~~---~ 114 (487)
..++|+++.+.+... .|+- ..|+.--..+...+ +++++++.++.+.... +-+...|+---..+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 345788877777653 3443 23554444555556 7777777777776532 11223333222222 223 5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHH--HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC------H
Q 011378 115 NMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLD--RALMYFREMKSAGLVPDNVLYTIIINGYCRNGF------V 186 (487)
Q Consensus 115 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~------~ 186 (487)
++++++++++.+.+.. +-|...|+.--.+..+.|.++ +++++++++.+... -|...|+.--..+.+.+. .
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 6677777777776542 225556665555555666666 66666666665331 233344433333333333 4
Q ss_pred HHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011378 187 LEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKML-TEADDLFNEMLERG--VFPDFYTFTTLIHGHCKDGNMNKALNLF 263 (487)
Q Consensus 187 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~--~~~~~~t~~~li~~~~~~g~~~~a~~~~ 263 (487)
+++++.++.+.... +-|...|+-+-..+.+.|.. +.+..+..+..+.+ -..++..+..+...|.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 44444444444332 12333444444444444332 22223333322211 1123344444444444444444444444
Q ss_pred HHH
Q 011378 264 DIM 266 (487)
Q Consensus 264 ~~m 266 (487)
+.+
T Consensus 282 ~~l 284 (306)
T 3dra_A 282 DLL 284 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.76 E-value=0.00083 Score=51.69 Aligned_cols=92 Identities=12% Similarity=0.050 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 011378 313 YGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVR 392 (487)
Q Consensus 313 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 392 (487)
+..+...+...|++++|...++...... +.+...+..+...+...|+.++|...+++..+.. +.+...+..+...|.+
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3334444444444444444444443321 1223333444444444444444444444433321 1122333333344444
Q ss_pred cCCHHHHHHHHHHH
Q 011378 393 EENMDKAFALVSKM 406 (487)
Q Consensus 393 ~~~~~~a~~~~~~m 406 (487)
.|++++|...+++.
T Consensus 93 ~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 93 LNKHVEAVAYYKKA 106 (131)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH
Confidence 44444444444433
No 127
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.0032 Score=60.26 Aligned_cols=194 Identities=7% Similarity=-0.034 Sum_probs=94.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-Cee---------------ehHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCh
Q 011378 248 HGHCKDGNMNKALNLFDIMTQKSIKP-DIV---------------TYNTLIDGFCKVGEMEKANKLWADMISR-KISPNY 310 (487)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~---------------~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~ 310 (487)
..+.+.|++++|++.|....+..... +.. .+..|...|.+.|++++|.+.+...... +..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 45667788888888887776543222 111 1455666667777777777666654421 111111
Q ss_pred h----hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCC--
Q 011378 311 I----SYGILINGYCSMGHVTEAFRLWYEMVG----KGIKPT-LVSCNTIIKGYCRSGDASKADEFLSKMVSE--GVD-- 377 (487)
Q Consensus 311 ~----t~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~-- 377 (487)
. ..+.+-..+...|+.+++..++..... .+..+. ..++..+...|...|++++|..++++.... +..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 111122222334566666666654432 222222 234455555666666666666666554422 111
Q ss_pred CC-hhhHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHH
Q 011378 378 PD-SISYNTLINGFVREENMDKAFALVSKMEN----QGLVPD--VITYNVILTGFCRQGRMHDSELILWRM 441 (487)
Q Consensus 378 p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m 441 (487)
|. ..++..+...|...|++++|...+++... .+..|. ...+..+...+...|++++|...|.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11 23455555556666666666665554332 111111 123444444555555666665555554
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.69 E-value=0.0013 Score=50.57 Aligned_cols=120 Identities=8% Similarity=0.013 Sum_probs=92.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011378 344 TLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILT 423 (487)
Q Consensus 344 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (487)
+...+..+...+...|++++|...+++..... +.+...+..+...|...|++++|.+.+++..+.. ..+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34566777788889999999999999987643 2356778888899999999999999998887642 234677888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011378 424 GFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNL 466 (487)
Q Consensus 424 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~ 466 (487)
.+.+.|++++|...+++.....- .+...+..+...+...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 99999999999999999876521 2456666677777666653
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.67 E-value=0.0012 Score=51.09 Aligned_cols=60 Identities=5% Similarity=-0.022 Sum_probs=24.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 382 SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMI 442 (487)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 442 (487)
.+..+...|...|++++|.+.+++..+.. ..+...+..+...+.+.|++++|...+++..
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33334444444444444444444333221 1123334444444444444444444444443
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.62 E-value=0.0018 Score=50.07 Aligned_cols=95 Identities=19% Similarity=0.130 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHH
Q 011378 137 SFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLC 216 (487)
Q Consensus 137 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 216 (487)
.+..+...+.+.|++++|...|++..... ..+...+..+...+...|+.++|.+.+++..+.. +.+...|..+...+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 34444444445555555555544443321 1123334444444444444444444444443321 112334444444455
Q ss_pred hcCCHHHHHHHHHHHHH
Q 011378 217 RAKMLTEADDLFNEMLE 233 (487)
Q Consensus 217 ~~~~~~~a~~~~~~m~~ 233 (487)
+.|++++|.+.|++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555554443
No 131
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.58 E-value=0.00044 Score=55.56 Aligned_cols=82 Identities=17% Similarity=0.143 Sum_probs=39.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHh
Q 011378 350 TIIKGYCRSGDASKADEFLSKMVSEGVDP-DSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCR 427 (487)
Q Consensus 350 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~ 427 (487)
.+-..|.+.|++++|.+.+++..+. .| +...|..+-..|.+.|++++|...+++..+. .| +...|..+...|.+
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3444444555555555555544432 12 2334555555555555555555555544432 23 23445555555555
Q ss_pred cCChHHHH
Q 011378 428 QGRMHDSE 435 (487)
Q Consensus 428 ~g~~~~a~ 435 (487)
.|+.+++.
T Consensus 112 ~~~~~~aa 119 (150)
T 4ga2_A 112 NDVTDGRA 119 (150)
T ss_dssp HCSSSSHH
T ss_pred cCChHHHH
Confidence 55554433
No 132
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.0048 Score=59.06 Aligned_cols=196 Identities=12% Similarity=0.012 Sum_probs=139.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCe
Q 011378 213 NGLCRAKMLTEADDLFNEMLERGVFP-DF---------------YTFTTLIHGHCKDGNMNKALNLFDIMTQKS-IKPDI 275 (487)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~~~~~-~~---------------~t~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~ 275 (487)
..+.+.|++++|.+.|.+..+..-.. +. ..+..+...|...|++++|.+.+......- -.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 55678899999999999998754322 11 237788999999999999999998765421 11121
Q ss_pred ---eehHHHH-HHHHccCCHHHHHHHHHHHHh----CCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC
Q 011378 276 ---VTYNTLI-DGFCKVGEMEKANKLWADMIS----RKISPN-YISYGILINGYCSMGHVTEAFRLWYEMVGK----GIK 342 (487)
Q Consensus 276 ---~~~~~li-~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~ 342 (487)
.....++ ..+...|+.++|..++..... .+..+. ..++..+...+...|++++|..++.+.... +-+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1222233 334557889999999987653 333333 456788999999999999999999887642 222
Q ss_pred CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CC--CCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 343 PT-LVSCNTIIKGYCRSGDASKADEFLSKMVSE--GV--DPD--SISYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 343 ~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~--~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
+. ..++..+...|...|++++|..++++.... .+ +|. ...+..+...+...+++++|...+.+.-+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 347888899999999999999999887532 22 222 24567777888899999999998876644
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.55 E-value=0.0021 Score=59.46 Aligned_cols=131 Identities=14% Similarity=-0.005 Sum_probs=76.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011378 309 NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPT--------------LVSCNTIIKGYCRSGDASKADEFLSKMVSE 374 (487)
Q Consensus 309 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (487)
+...+..+-..|...|++++|...|+......-... ...|..+-.+|.+.|++++|...+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345667777777778888888888777665421111 355666666666666666666666666543
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChHHHH-HHHHHHH
Q 011378 375 GVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSE-LILWRMI 442 (487)
Q Consensus 375 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~-~~~~~m~ 442 (487)
. +.+...|..+-.+|...|++++|...|++..+. .| +...+..+...+.+.|+.+++. ..++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 123445566666666666666666666655442 23 3445555555666666666652 3444443
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.55 E-value=0.0016 Score=60.22 Aligned_cols=129 Identities=12% Similarity=-0.042 Sum_probs=90.7
Q ss_pred eeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011378 275 IVTYNTLIDGFCKVGEMEKANKLWADMISRKISPN--------------YISYGILINGYCSMGHVTEAFRLWYEMVGKG 340 (487)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~ 340 (487)
...+..+-..|.+.|++++|...|.+.....-... ...|..+-.+|...|++++|...++......
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44566677778888888888888887765432211 3677788888888888888888888776643
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCHHHHH-HHHHHH
Q 011378 341 IKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDP-DSISYNTLINGFVREENMDKAF-ALVSKM 406 (487)
Q Consensus 341 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~-~~~~~m 406 (487)
+.+...|..+-.+|...|++++|...+++..+. .| +...+..+-..+.+.++.++|. ..+++|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667777778888888888888888887754 24 3456777777777777777773 344444
No 135
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.54 E-value=0.00048 Score=55.31 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=7.1
Q ss_pred HHHHHHhCCCHHHHHHHHH
Q 011378 141 LIGIFSRNGQLDRALMYFR 159 (487)
Q Consensus 141 li~~~~~~g~~~~a~~~~~ 159 (487)
+-.++.+.|++++|...|+
T Consensus 71 lg~~~~~~~~~~~A~~~~~ 89 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYR 89 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHH
Confidence 3333333333333333333
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.53 E-value=0.00078 Score=55.59 Aligned_cols=119 Identities=11% Similarity=0.110 Sum_probs=58.8
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCCh--HH
Q 011378 287 KVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKG-YCRSGDA--SK 363 (487)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~--~~ 363 (487)
..|++++|...+....... +.+...|..+...|...|++++|...|+...... +.+...+..+-.. +...|+. ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3445555555555443321 1234455555666666666666666666554332 2233444444444 4455555 66
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 364 ADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 364 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
|...+++..+.. +.+...+..+...|...|++++|...+++..+
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 666666555432 11234455555555666666666666655544
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.52 E-value=0.0034 Score=50.30 Aligned_cols=95 Identities=11% Similarity=-0.050 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHH
Q 011378 347 SCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGF 425 (487)
Q Consensus 347 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~ 425 (487)
.+..+-..+.+.|++++|...|+...... +-+...|..|-.+|...|++++|...+++..+. .| +...|..+-..|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHH
Confidence 34445555666666666666666665432 123445666666666666666666666665542 23 344556666666
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 011378 426 CRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~ 444 (487)
.+.|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666665543
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.49 E-value=0.0011 Score=54.74 Aligned_cols=120 Identities=8% Similarity=0.052 Sum_probs=89.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-HhccCCH--HH
Q 011378 322 SMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLING-FVREENM--DK 398 (487)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~--~~ 398 (487)
..|++++|...++...... +.+...|..+-..|...|++++|...+++..... +.+...+..+... |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4577888888888766543 3466788888889999999999999999887643 1245567777777 7788888 99
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011378 399 AFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 399 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 444 (487)
|...+++..+.. ..+...+..+...+...|++++|...+++....
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 999998886642 224667788888899999999999999998764
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.47 E-value=0.002 Score=47.90 Aligned_cols=96 Identities=8% Similarity=-0.087 Sum_probs=52.9
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 011378 382 SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLN-PDRSTYTTLINGH 460 (487)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~ty~~l~~~~ 460 (487)
.+..+...+...|++++|...+++..+.. ..+...|..+...+.+.|++++|...+++..+..-. .+...+..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34444555555666666666665554321 123445555556666666666666666665543210 0345566666666
Q ss_pred Hhc-CCHHHHHHHHHHHHH
Q 011378 461 VSQ-NNLKEAFRFHDEMLQ 478 (487)
Q Consensus 461 ~~~-~~~~~a~~~~~~m~~ 478 (487)
... |++++|.+.+++..+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 666 666666666666553
No 140
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.45 E-value=0.06 Score=48.60 Aligned_cols=219 Identities=8% Similarity=-0.006 Sum_probs=157.9
Q ss_pred CChhhHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcC--ChhHHHHHHHHHhhCCCCCC-ccchHHHHHHH----Hhc--
Q 011378 9 HKIDSAKMFLCEMEQKGVYPD-TVTYNTLINAYCREG--FLEEAFQLMNSMSGKGLKPG-VFTYNSLINGL----CKK-- 78 (487)
Q Consensus 9 ~~~~~a~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~----~~~-- 78 (487)
...++|....+.+.... |+ ...|+.--..+...+ ++++++++++.+... .|. ..+|+.--..+ ...
T Consensus 47 e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 47 EYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHhccc
Confidence 34468888888876643 53 456787777777777 999999999998764 243 34455433333 344
Q ss_pred -CChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh--HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCC-----
Q 011378 79 -GRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMS--EAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQ----- 150 (487)
Q Consensus 79 -~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----- 150 (487)
+++++++++++.+.+.. +-|...|+---..+.+.+..+ ++++.++.+.+... -|...|+.--.+..+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhh
Confidence 78999999999998743 346777776666677778777 99999999987653 367778776666666666
Q ss_pred -HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CcCChhhHHHHHHHHHhcCCHHHHHH
Q 011378 151 -LDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLE-ALKMRDEMLEKG--CVMDVVTYNTILNGLCRAKMLTEADD 226 (487)
Q Consensus 151 -~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~ 226 (487)
++++++.++++.... .-|...|+-+-..+.+.|...+ +..+.++..+.+ -+.+...+..+...|.+.|+.++|.+
T Consensus 201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 888999988877643 2356678888777878777444 445665554432 23466778889999999999999999
Q ss_pred HHHHHHHc
Q 011378 227 LFNEMLER 234 (487)
Q Consensus 227 ~~~~m~~~ 234 (487)
+++.+.++
T Consensus 280 ~~~~l~~~ 287 (306)
T 3dra_A 280 VYDLLKSK 287 (306)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99998763
No 141
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.44 E-value=0.0029 Score=48.86 Aligned_cols=95 Identities=9% Similarity=0.060 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011378 347 SCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFC 426 (487)
Q Consensus 347 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (487)
.+...=..|.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|...+++..+.. ..+...|..+-..+.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45555666777778888877777766532 2245567777777777777777777777665432 223556777777777
Q ss_pred hcCChHHHHHHHHHHHH
Q 011378 427 RQGRMHDSELILWRMIE 443 (487)
Q Consensus 427 ~~g~~~~a~~~~~~m~~ 443 (487)
..|++++|...|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 77777777777777665
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.44 E-value=0.0021 Score=47.81 Aligned_cols=94 Identities=13% Similarity=0.016 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCeeehHHHHHHHH
Q 011378 208 YNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIK-PDIVTYNTLIDGFC 286 (487)
Q Consensus 208 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~ 286 (487)
|..+...+.+.|++++|...|++..+.. +.+...+..+-..+...|++++|...|+...+..-. .+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3344444444455555555554444321 123334444444444455555555544444332110 02233444444444
Q ss_pred cc-CCHHHHHHHHHHHH
Q 011378 287 KV-GEMEKANKLWADMI 302 (487)
Q Consensus 287 ~~-g~~~~a~~~~~~m~ 302 (487)
+. |++++|.+.+....
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAK 104 (112)
T ss_dssp TCSSCSHHHHHHHHHHG
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 44 44444444444443
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.43 E-value=0.006 Score=48.82 Aligned_cols=95 Identities=14% Similarity=0.073 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHH
Q 011378 137 SFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLC 216 (487)
Q Consensus 137 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 216 (487)
.+..+-..+.+.|++++|...|++..... +.+...|..+-.+|.+.|+.++|...+++..+.. +-++..|..+-.+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 34444455566666666666666655432 1123445555555555555555555555554432 113344555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 011378 217 RAKMLTEADDLFNEMLE 233 (487)
Q Consensus 217 ~~~~~~~a~~~~~~m~~ 233 (487)
+.|++++|...|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555554
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.43 E-value=0.0028 Score=56.28 Aligned_cols=186 Identities=9% Similarity=-0.086 Sum_probs=91.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCCee-------------
Q 011378 217 RAKMLTEADDLFNEMLERGVFPDFYTFTTL-------IHGHCKDGNMNKALNLFDIMTQKSIKPDIV------------- 276 (487)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~~~~~~~~t~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------- 276 (487)
..++...|.+.|.+..+.. +-....|..+ ...+.+.++..+++..+. +..++.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~--~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLS--GSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHH--HTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHH--HHhcCChhhhhhhhccCCccccc
Confidence 5678888888888877642 1133455544 223333222333332222 2234344311
Q ss_pred ---------ehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--h
Q 011378 277 ---------TYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPT--L 345 (487)
Q Consensus 277 ---------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~ 345 (487)
..-.+...+...|++++|.++|..+...+ |+....-.+-..+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 01223455566677777777776554332 433233344445666677777776665332211 110 1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 346 VSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD--SISYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 346 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
..+..+=.++.+.|+.++|...+++.......|. ......+-.++.+.|+.++|...|+++..
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2344445556666666666666666553332233 11233333445556666666666666554
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.43 E-value=0.0042 Score=48.37 Aligned_cols=99 Identities=8% Similarity=0.008 Sum_probs=76.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011378 343 PTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVIL 422 (487)
Q Consensus 343 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 422 (487)
.+...+..+-..+...|++++|...++...... +.+...+..+-..|...|++++|...+++..+.. ..+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 456677788888888999999999998877643 2246678888888888999999998888876642 22466788888
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 011378 423 TGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 423 ~~~~~~g~~~~a~~~~~~m~~ 443 (487)
..+...|++++|...|.+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 888889999999888888764
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.42 E-value=0.0023 Score=56.72 Aligned_cols=126 Identities=7% Similarity=-0.105 Sum_probs=71.2
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhc
Q 011378 106 LLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD--NVLYTIIINGYCRN 183 (487)
Q Consensus 106 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~ 183 (487)
+...+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|+...... .|. ...+..+=.++.+.
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3445556667777777776665432 433233344446667777777777776433211 110 22455566666777
Q ss_pred CCHHHHHHHHHHHHHcCCcCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011378 184 GFVLEALKMRDEMLEKGCVMD--VVTYNTILNGLCRAKMLTEADDLFNEMLER 234 (487)
Q Consensus 184 ~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (487)
|+.++|+..+++.......|. .......-.++.+.|+.++|..+|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 777777777776653322132 223444555566677777777777777664
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.40 E-value=0.0083 Score=44.83 Aligned_cols=56 Identities=23% Similarity=0.194 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 011378 315 ILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKM 371 (487)
Q Consensus 315 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 371 (487)
.+...+...|++++|...++...... +.+...+..+-..+...|+.++|...+++.
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 64 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 33333444444444444444433221 112333333333344444444444444433
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.37 E-value=0.0083 Score=53.77 Aligned_cols=91 Identities=12% Similarity=-0.053 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CeeehHHHHHHHH
Q 011378 208 YNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKP-DIVTYNTLIDGFC 286 (487)
Q Consensus 208 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~ 286 (487)
+..+...+.+.|++++|...|++..+.. +-+...|..+-..|.+.|++++|+..++...+. .| +...+..+-.+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3334444444555555555555444321 113444444445555555555555555444322 22 2233444444555
Q ss_pred ccCCHHHHHHHHHHH
Q 011378 287 KVGEMEKANKLWADM 301 (487)
Q Consensus 287 ~~g~~~~a~~~~~~m 301 (487)
..|++++|...|...
T Consensus 84 ~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 84 EMESYDEAIANLQRA 98 (281)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555443
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.37 E-value=0.0039 Score=46.70 Aligned_cols=98 Identities=9% Similarity=0.041 Sum_probs=71.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011378 345 LVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTG 424 (487)
Q Consensus 345 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 424 (487)
...+..+...+...|++++|...++...... +.+...+..+...|...|++++|...+++..+.. ..+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4556667777888888888888888876542 2255667777778888888888888887776542 2245667777778
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 011378 425 FCRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 425 ~~~~g~~~~a~~~~~~m~~~ 444 (487)
+.+.|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 88888888888888877643
No 150
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.37 E-value=0.0069 Score=46.72 Aligned_cols=96 Identities=13% Similarity=0.001 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011378 311 ISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGF 390 (487)
Q Consensus 311 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 390 (487)
..+...-..|.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|...+++..+.. +.+...|..+-.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 445666666777777777777777665432 3345566666677777777777777777766532 12345666666777
Q ss_pred hccCCHHHHHHHHHHHHh
Q 011378 391 VREENMDKAFALVSKMEN 408 (487)
Q Consensus 391 ~~~~~~~~a~~~~~~m~~ 408 (487)
...|++++|.+.|++..+
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 777777777777766654
No 151
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.36 E-value=0.0055 Score=54.97 Aligned_cols=95 Identities=11% Similarity=-0.080 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011378 172 LYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHC 251 (487)
Q Consensus 172 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~ 251 (487)
.+..+-..+.+.|+.++|...+.+..+.. +-+...|..+-.+|.+.|++++|...+++..+.. +-+...+..+-.+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33444444455555555555555444321 1244455666666666666666666666665432 224556666666777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 011378 252 KDGNMNKALNLFDIMTQ 268 (487)
Q Consensus 252 ~~g~~~~a~~~~~~m~~ 268 (487)
..|++++|+..|+...+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777765543
No 152
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.36 E-value=0.0038 Score=47.86 Aligned_cols=94 Identities=12% Similarity=0.110 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC--CCCC----HhhHHHHH
Q 011378 349 NTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQG--LVPD----VITYNVIL 422 (487)
Q Consensus 349 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~----~~~~~~li 422 (487)
..+-..+...|++++|...+++..... +.+...+..+...|...|++++|...+++..+.. ..++ ...|..+.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 334444444455555555554444322 1233344444555555555555555555443321 0111 34455555
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 011378 423 TGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 423 ~~~~~~g~~~~a~~~~~~m~~ 443 (487)
..+.+.|++++|...+++..+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 566666666666666666554
No 153
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.36 E-value=0.0018 Score=51.93 Aligned_cols=60 Identities=13% Similarity=-0.022 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 207 TYNTILNGLCRAKMLTEADDLFNEMLER----GVFP-DFYTFTTLIHGHCKDGNMNKALNLFDIM 266 (487)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m 266 (487)
.+..+...+...|++++|.+.+++..+. +..+ ...++..+-..+...|+.++|...++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444555555666666666666554421 1100 1234445555555666666666555543
No 154
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.35 E-value=0.0015 Score=52.38 Aligned_cols=97 Identities=11% Similarity=0.055 Sum_probs=57.3
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHH
Q 011378 382 SYNTLINGFVREENMDKAFALVSKMEN----QGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEK----GLNP-DRS 451 (487)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ 451 (487)
++..+-..|...|++++|.+.+++..+ .+-.+ ....+..+...+...|++++|...+++..+. +-.+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 445555555666666666666554432 11111 1334566666777777777777777765532 1111 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 452 TYTTLINGHVSQNNLKEAFRFHDEMLQ 478 (487)
Q Consensus 452 ty~~l~~~~~~~~~~~~a~~~~~~m~~ 478 (487)
.+..+...|...|++++|.+.+++-.+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566677788888888888888877654
No 155
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.32 E-value=0.004 Score=49.68 Aligned_cols=98 Identities=15% Similarity=-0.020 Sum_probs=78.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHH
Q 011378 344 TLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVIL 422 (487)
Q Consensus 344 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li 422 (487)
+...+..+-..+.+.|++++|...++...... +.+...|..+-.+|...|++++|...+++.... .| +...|..+-
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHH
Confidence 34456667778889999999999999887643 235667888888899999999999999888654 34 456788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 011378 423 TGFCRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 423 ~~~~~~g~~~~a~~~~~~m~~~ 444 (487)
..|...|++++|...|++..+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999987653
No 156
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.30 E-value=0.0032 Score=48.27 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=47.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--cCC----hhhHHHH
Q 011378 138 FSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGC--VMD----VVTYNTI 211 (487)
Q Consensus 138 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~~~~~l 211 (487)
+..+...+.+.|+++.|...|++..... ..+...+..+...+...|+.++|...+++..+... .++ ...|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444445555555555555555544322 12233444455555555555555555554443211 111 3345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 011378 212 LNGLCRAKMLTEADDLFNEMLER 234 (487)
Q Consensus 212 i~~~~~~~~~~~a~~~~~~m~~~ 234 (487)
...+.+.|+++.|.+.|++..+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 55666666666666666665553
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.30 E-value=0.0045 Score=48.86 Aligned_cols=97 Identities=8% Similarity=-0.071 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011378 346 VSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGF 425 (487)
Q Consensus 346 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (487)
..+..+-..+.+.|++++|...++...... +.+...|..+-.+|.+.|++++|...+++..... .-+...|..+...|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 345556667788899999999998887643 2256677788888889999999999998876642 22456677788888
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 011378 426 CRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~ 444 (487)
...|++++|...|++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8999999999998887653
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.25 E-value=0.0058 Score=51.36 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011378 313 YGILINGYCSMGHVTEAFRLWYEMVG 338 (487)
Q Consensus 313 ~~~li~~~~~~~~~~~a~~~~~~m~~ 338 (487)
+..+-..+...|++++|...|+....
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~ 66 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALD 66 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444455555555655555555443
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0068 Score=46.46 Aligned_cols=96 Identities=17% Similarity=0.070 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHH
Q 011378 346 VSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTG 424 (487)
Q Consensus 346 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~ 424 (487)
..|..+-..+.+.|++++|...+++..+.. +.+...|..+-.+|.+.|++++|...+++..+. .| +...|..+...
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 445566677788888888888888877643 224567778888888888888888888877654 34 45677777788
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 011378 425 FCRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 425 ~~~~g~~~~a~~~~~~m~~~ 444 (487)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888877653
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.25 E-value=0.0077 Score=46.80 Aligned_cols=99 Identities=12% Similarity=-0.022 Sum_probs=78.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 011378 308 PNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLI 387 (487)
Q Consensus 308 p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 387 (487)
.+...+..+...+...|++++|...|....... +.+...|..+-..+...|++++|...++...+.. +.+...+..+-
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 456778888888899999999999998876653 3356778888888889999999999998887643 22456788888
Q ss_pred HHHhccCCHHHHHHHHHHHHh
Q 011378 388 NGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~m~~ 408 (487)
..|...|++++|...+++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 888899999999988887654
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.24 E-value=0.018 Score=45.14 Aligned_cols=95 Identities=14% Similarity=-0.037 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHH
Q 011378 136 VSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD----NVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTI 211 (487)
Q Consensus 136 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 211 (487)
..+..+...+.+.|++++|...|++..+. .|+ ...|..+-..|.+.|+.++|...+++..+.. +.+...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 34444444555555555555555554432 233 2344444444445555555555444443321 1123344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 011378 212 LNGLCRAKMLTEADDLFNEMLE 233 (487)
Q Consensus 212 i~~~~~~~~~~~a~~~~~~m~~ 233 (487)
..++...|++++|...|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.015 Score=45.66 Aligned_cols=93 Identities=18% Similarity=0.125 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHH
Q 011378 347 SCNTIIKGYCRSGDASKADEFLSKMVSEGVDPD----SISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVI 421 (487)
Q Consensus 347 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l 421 (487)
.+..+-..+...|++++|...+++..+. .|+ ...+..+-..|...|++++|...+++..+. .| +...|..+
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 105 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHHH
Confidence 3344444444445555555555444432 233 334444445555555555555555544332 12 33444555
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 011378 422 LTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 422 i~~~~~~g~~~~a~~~~~~m~~ 443 (487)
...+...|++++|...+++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555566666555555543
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.20 E-value=0.0065 Score=49.24 Aligned_cols=99 Identities=9% Similarity=-0.037 Sum_probs=82.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011378 344 TLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILT 423 (487)
Q Consensus 344 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 423 (487)
+...+..+-..+.+.|++++|...+++..+.. +-+...|..+-.+|.+.|++++|...+++..+.. .-+...|..+-.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567778888999999999999999988643 2256788889999999999999999999887642 224678888999
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 011378 424 GFCRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 424 ~~~~~g~~~~a~~~~~~m~~~ 444 (487)
.|.+.|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.20 E-value=0.009 Score=46.10 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=52.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CcCC----hhhHHH
Q 011378 138 FSTLIGIFSRNGQLDRALMYFREMKSAGLVP-DNVLYTIIINGYCRNGFVLEALKMRDEMLEKG--CVMD----VVTYNT 210 (487)
Q Consensus 138 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~----~~~~~~ 210 (487)
+..+-..+.+.|++++|++.|++..+. .| +...|..+-.+|.+.|+.++|.+.+++..+.. ...+ ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 444555566666666666666655442 22 23445555555666666666655555544321 1111 123445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 011378 211 ILNGLCRAKMLTEADDLFNEMLERGVFPDFYT 242 (487)
Q Consensus 211 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t 242 (487)
+-.++...|+++.|.+.|++..+. .||+.+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 555566666777777776665542 344443
No 165
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.18 E-value=0.0066 Score=48.39 Aligned_cols=95 Identities=7% Similarity=-0.136 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 011378 312 SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFV 391 (487)
Q Consensus 312 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 391 (487)
.+..+-..+...|++++|...|+...... +.+...|..+-.+|...|++++|...+++..... +.+...+..+-.+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 44445555566666666666666554432 2244555555556666666666666666655432 113345555666666
Q ss_pred ccCCHHHHHHHHHHHHh
Q 011378 392 REENMDKAFALVSKMEN 408 (487)
Q Consensus 392 ~~~~~~~a~~~~~~m~~ 408 (487)
..|++++|.+.+++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665543
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.18 E-value=0.011 Score=49.51 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=13.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 011378 138 FSTLIGIFSRNGQLDRALMYFREMKS 163 (487)
Q Consensus 138 ~~~li~~~~~~g~~~~a~~~~~~m~~ 163 (487)
+..+-..+.+.|++++|...|++...
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~ 66 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALD 66 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344455555555555555555544
No 167
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.17 E-value=0.0072 Score=47.65 Aligned_cols=95 Identities=8% Similarity=-0.155 Sum_probs=56.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 011378 312 SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFV 391 (487)
Q Consensus 312 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 391 (487)
.+..+-..+...|++++|...|+...... +.+...|..+-.+|.+.|++++|...++...... +.+...+..+-.+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34444555666666666666666655432 2344555566666666677777777766665532 123345555666666
Q ss_pred ccCCHHHHHHHHHHHHh
Q 011378 392 REENMDKAFALVSKMEN 408 (487)
Q Consensus 392 ~~~~~~~a~~~~~~m~~ 408 (487)
..|++++|.+.+++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777776666543
No 168
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.013 Score=44.85 Aligned_cols=96 Identities=8% Similarity=0.026 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011378 311 ISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGF 390 (487)
Q Consensus 311 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 390 (487)
..|..+-..+...|++++|...|+...... +.+...|..+-.+|.+.|++++|...+++..+.. +.+...|..+-.+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 456666777788888888888888776543 3356677777888888888888888888877643 12355677777888
Q ss_pred hccCCHHHHHHHHHHHHh
Q 011378 391 VREENMDKAFALVSKMEN 408 (487)
Q Consensus 391 ~~~~~~~~a~~~~~~m~~ 408 (487)
...|++++|...+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 888888888888877654
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.12 E-value=0.0037 Score=48.35 Aligned_cols=59 Identities=7% Similarity=0.098 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 208 YNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMT 267 (487)
Q Consensus 208 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 267 (487)
+..+-..+.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++|+..|+...
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 4445555666666666666666655432 2244556666666666666666666665443
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.08 E-value=0.0078 Score=48.73 Aligned_cols=99 Identities=13% Similarity=-0.007 Sum_probs=83.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 011378 309 NYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLIN 388 (487)
Q Consensus 309 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 388 (487)
+...+..+-..+...|++++|...|+...... +.+...|..+-.+|.+.|++++|...+++..+.. +-+...|..+-.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45678888899999999999999999987653 3367788889999999999999999999988753 224678888999
Q ss_pred HHhccCCHHHHHHHHHHHHhC
Q 011378 389 GFVREENMDKAFALVSKMENQ 409 (487)
Q Consensus 389 ~~~~~~~~~~a~~~~~~m~~~ 409 (487)
.|...|++++|...+++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999987653
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.07 E-value=0.011 Score=45.27 Aligned_cols=91 Identities=11% Similarity=0.114 Sum_probs=67.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HhhHHHH
Q 011378 350 TIIKGYCRSGDASKADEFLSKMVSEGVDPDS----ISYNTLINGFVREENMDKAFALVSKMENQGLVPD----VITYNVI 421 (487)
Q Consensus 350 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~l 421 (487)
.+-..+...|++++|...++...+.. |+. ..+..+-..|.+.|++++|...+++..+. .|+ ...+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~l 82 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHH
Confidence 34556778889999999888887643 332 36666777888888999998888887653 243 4556777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 011378 422 LTGFCRQGRMHDSELILWRMIEK 444 (487)
Q Consensus 422 i~~~~~~g~~~~a~~~~~~m~~~ 444 (487)
...+.+.|++++|...|++....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888888888888888887764
No 172
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.96 E-value=0.0048 Score=59.93 Aligned_cols=97 Identities=11% Similarity=0.019 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCc
Q 011378 137 SFSTLIGIFSRNGQLDRALMYFREMKS-----AGL-VPD-NVLYTIIINGYCRNGFVLEALKMRDEMLE-------KGCV 202 (487)
Q Consensus 137 ~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-------~g~~ 202 (487)
+++.|..+|...|++++|..++++... .|- -|+ ..+++.|-..|...|+.++|..++++..+ ...+
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 444455555555555555555444321 111 122 22455555555555555555554443321 1222
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 203 MDVVTYNTILNGLCRAKMLTEADDLFNEMLE 233 (487)
Q Consensus 203 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (487)
....+.+.+-.++...+.+++|+.++..+++
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223445555666666777777777777764
No 173
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.88 E-value=0.0061 Score=59.19 Aligned_cols=87 Identities=13% Similarity=0.012 Sum_probs=41.5
Q ss_pred HHccCCHHHHHHHHHHHHhC---CCC---C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCC---CC-hhhHHH
Q 011378 285 FCKVGEMEKANKLWADMISR---KIS---P-NYISYGILINGYCSMGHVTEAFRLWYEMVG---KGIK---PT-LVSCNT 350 (487)
Q Consensus 285 ~~~~g~~~~a~~~~~~m~~~---~~~---p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~---~~-~~~~~~ 350 (487)
+...|++++|..++.+.... -+. | ...+++.|...|...|++++|..+++.... .-+. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34456666666665544321 111 1 123455666666666666666655554321 1111 11 234555
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 011378 351 IIKGYCRSGDASKADEFLSKM 371 (487)
Q Consensus 351 li~~~~~~~~~~~a~~~~~~m 371 (487)
|-..|...|++++|..++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 555555555555555555443
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.88 E-value=0.0023 Score=48.55 Aligned_cols=83 Identities=14% Similarity=0.040 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 011378 289 GEMEKANKLWADMISRKI--SPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADE 366 (487)
Q Consensus 289 g~~~~a~~~~~~m~~~~~--~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 366 (487)
|++++|...|.+....+. +.+...+..+-..|...|++++|...|+...... +-+...+..+-.++...|+.++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 344444444444443220 1122334444444555555555555555444331 1223344444444555555555555
Q ss_pred HHHHHH
Q 011378 367 FLSKMV 372 (487)
Q Consensus 367 ~~~~m~ 372 (487)
.+++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.83 E-value=0.0024 Score=48.46 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=42.4
Q ss_pred CChHHHHHHHHHHHHCCC-CC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 011378 359 GDASKADEFLSKMVSEGV-DP-DSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSEL 436 (487)
Q Consensus 359 ~~~~~a~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 436 (487)
|+.++|...+++..+.+. .| +...+..|-..|...|++++|...+++..+.. .-+...+..+...+.+.|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555555554321 12 23345555555666666666666665554431 1124455555556666666666666
Q ss_pred HHHHHHH
Q 011378 437 ILWRMIE 443 (487)
Q Consensus 437 ~~~~m~~ 443 (487)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.79 E-value=0.014 Score=44.44 Aligned_cols=88 Identities=13% Similarity=0.061 Sum_probs=46.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc
Q 011378 386 LINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLINGHVSQ 463 (487)
Q Consensus 386 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~l~~~~~~~ 463 (487)
+-..+.+.|++++|...+++..+. .| +...|..+-..+.+.|++++|...+++..+. .| +...+..+...|...
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 334445555555555555555432 23 3444555555555666666666666555443 23 334555555556666
Q ss_pred CCHHHHHHHHHHHH
Q 011378 464 NNLKEAFRFHDEML 477 (487)
Q Consensus 464 ~~~~~a~~~~~~m~ 477 (487)
|++++|...+++.+
T Consensus 99 g~~~~A~~~~~~al 112 (121)
T 1hxi_A 99 HNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666665554
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.75 E-value=0.0075 Score=58.68 Aligned_cols=114 Identities=14% Similarity=0.162 Sum_probs=55.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHH
Q 011378 356 CRSGDASKADEFLSKMVSEGVDP-DSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDS 434 (487)
Q Consensus 356 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 434 (487)
.+.|++++|.+.+++..+. .| +...|..+-.+|.+.|++++|.+.+++..+.. .-+...|..+...|.+.|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445555555555555442 22 24455555555566666666666655554431 11344555555566666666666
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHH--HHhcCCHHHHHHHHH
Q 011378 435 ELILWRMIEKGLNPD-RSTYTTLING--HVSQNNLKEAFRFHD 474 (487)
Q Consensus 435 ~~~~~~m~~~g~~p~-~~ty~~l~~~--~~~~~~~~~a~~~~~ 474 (487)
...+++..+. .|+ ...+..+-.+ +...|++++|.+.++
T Consensus 94 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666665543 121 1222223222 555566666666554
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.75 E-value=0.035 Score=42.33 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 011378 315 ILINGYCSMGHVTEAFRLWYEMV 337 (487)
Q Consensus 315 ~li~~~~~~~~~~~a~~~~~~m~ 337 (487)
.+..++...|++++|...|+...
T Consensus 44 ~lg~~~~~~~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 44 WLGESYYATRNFQLAEAQFRDLV 66 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444444444444444443
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.63 E-value=0.018 Score=43.83 Aligned_cols=89 Identities=13% Similarity=0.064 Sum_probs=41.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCH
Q 011378 72 INGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQL 151 (487)
Q Consensus 72 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 151 (487)
-..+.+.|++++|...|++..+.. +-+...|..+-..+...|++++|...|++..+.. +-+...+..+..++.+.|++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 334445555555555555544321 1133444444444555555555555555544331 11333444455555555555
Q ss_pred HHHHHHHHHHH
Q 011378 152 DRALMYFREMK 162 (487)
Q Consensus 152 ~~a~~~~~~m~ 162 (487)
++|...+++..
T Consensus 102 ~~A~~~~~~al 112 (121)
T 1hxi_A 102 NAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.60 E-value=0.0093 Score=58.02 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=66.7
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 011378 285 FCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKA 364 (487)
Q Consensus 285 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 364 (487)
+.+.|++++|.+.+++..+.. +.+...|..+..+|...|++++|...++...+.. +.+...+..+-.+|...|+.++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 445666666666666655431 1235566667777777777777777777666542 23455666666777777777777
Q ss_pred HHHHHHHHHCCCCCC-hhhHHHHHHH--HhccCCHHHHHHHHH
Q 011378 365 DEFLSKMVSEGVDPD-SISYNTLING--FVREENMDKAFALVS 404 (487)
Q Consensus 365 ~~~~~~m~~~g~~p~-~~~~~~li~~--~~~~~~~~~a~~~~~ 404 (487)
.+.+++..+.. |+ ...+..+-.+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777766532 22 2233333333 666677777777665
No 181
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.55 E-value=0.15 Score=39.64 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChHHHH
Q 011378 360 DASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCR----QGRMHDSE 435 (487)
Q Consensus 360 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~ 435 (487)
+.++|.+.+++..+.| .|+.. |-..|...+.+++|.+.+++--+.| +...+..|-..|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555555544 12221 3344444445555555555554443 33444444444444 55555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 011378 436 LILWRMIEKGLNPDRSTYTTLINGHVS----QNNLKEAFRFHDEMLQRGF 481 (487)
Q Consensus 436 ~~~~~m~~~g~~p~~~ty~~l~~~~~~----~~~~~~a~~~~~~m~~~g~ 481 (487)
..|++..+.| +...+..|-..|.. .+++++|.+.+++-.+.|.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 5555555442 34444455555555 5556666666655555443
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.50 E-value=0.042 Score=53.06 Aligned_cols=128 Identities=13% Similarity=-0.002 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 011378 312 SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPT--------------LVSCNTIIKGYCRSGDASKADEFLSKMVSEGVD 377 (487)
Q Consensus 312 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 377 (487)
.|..+-..+.+.|++++|...|+......-... ...|..+-.+|.+.|++++|...+++..+.. +
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 455555666666666666666665544211100 3556666667777777777777777766532 1
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChHHHHH-HHHHHH
Q 011378 378 PDSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSEL-ILWRMI 442 (487)
Q Consensus 378 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~-~~~~m~ 442 (487)
.+...|..+-.+|...|++++|...|++..+. .| +...+..+...+.+.|+.+++.+ .+..|.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23556666777777777777777777776543 34 33456666666666666666653 344443
No 183
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.46 E-value=0.52 Score=43.16 Aligned_cols=32 Identities=13% Similarity=0.307 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 237 FPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQ 268 (487)
Q Consensus 237 ~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (487)
.+.+..+..+...|...|+.++|.++++.+.+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 35667777788888888888888888877754
No 184
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.43 E-value=0.046 Score=56.99 Aligned_cols=75 Identities=16% Similarity=0.081 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011378 244 TTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSM 323 (487)
Q Consensus 244 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 323 (487)
..++..+.+.|..+.|+++.+.- ..-.......|+++.|.++.+.+ .+...|..|-..+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 55555555566666655443210 01122334455666665554322 3445566666666666
Q ss_pred CCHHHHHHHHHHH
Q 011378 324 GHVTEAFRLWYEM 336 (487)
Q Consensus 324 ~~~~~a~~~~~~m 336 (487)
++++.|.+.|..+
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 6666665555544
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.41 E-value=0.041 Score=53.12 Aligned_cols=89 Identities=9% Similarity=0.009 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHH
Q 011378 310 YISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDP-DSISYNTLIN 388 (487)
Q Consensus 310 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~ 388 (487)
...|..+-.+|.+.|++++|+..++...... +.+...|..+-.+|...|++++|...|++..+. .| +...+..+-.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3567777778888888888888888776543 335667777777888888888888888877753 34 3446667777
Q ss_pred HHhccCCHHHHHH
Q 011378 389 GFVREENMDKAFA 401 (487)
Q Consensus 389 ~~~~~~~~~~a~~ 401 (487)
.+.+.++.+++.+
T Consensus 394 ~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 394 CQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766653
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.40 E-value=0.042 Score=51.35 Aligned_cols=88 Identities=10% Similarity=0.010 Sum_probs=57.0
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 011378 380 SISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNP-DRSTYTTLI 457 (487)
Q Consensus 380 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~l~ 457 (487)
...|..+-.+|.+.|++++|.+.+++..+. .| +...|..+-.+|.+.|++++|...|++..+. .| +...+..+-
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 345666777777777777777777776653 34 4556677777777788888887777776654 34 344555555
Q ss_pred HHHHhcCCHHHHHH
Q 011378 458 NGHVSQNNLKEAFR 471 (487)
Q Consensus 458 ~~~~~~~~~~~a~~ 471 (487)
..+...++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555565555543
No 187
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.37 E-value=0.052 Score=56.56 Aligned_cols=150 Identities=12% Similarity=0.125 Sum_probs=77.5
Q ss_pred HccCChhHHHH-HHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011378 111 CRKENMSEAEE-IFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEA 189 (487)
Q Consensus 111 ~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 189 (487)
...+++++|.+ ++..+ |+......++..+.+.|.++.|+++.+.-. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 34666777665 44221 101123566667777777777776543111 112233456677776
Q ss_pred HHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011378 190 LKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQK 269 (487)
Q Consensus 190 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 269 (487)
.++.+.+ .+...|..+-..+.+.++++.|++.|..+.+ |..+...|...|+.+....+-+.....
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6664332 3455677777777777777777777766542 334444444455555544444333332
Q ss_pred CCCCCeeehHHHHHHHHccCCHHHHHHHHH
Q 011378 270 SIKPDIVTYNTLIDGFCKVGEMEKANKLWA 299 (487)
Q Consensus 270 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (487)
| -++.-..+|.+.|++++|.+++.
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHH
Confidence 2 22333334444555555555443
No 188
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.29 E-value=0.17 Score=39.39 Aligned_cols=16 Identities=6% Similarity=0.237 Sum_probs=7.7
Q ss_pred ChhHHHHHHHHHHHCC
Q 011378 115 NMSEAEEIFCEMSRRG 130 (487)
Q Consensus 115 ~~~~a~~~~~~m~~~g 130 (487)
+.++|.+.|++..+.|
T Consensus 10 d~~~A~~~~~~aa~~g 25 (138)
T 1klx_A 10 DLKKAIQYYVKACELN 25 (138)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCC
Confidence 4444555555444444
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.27 E-value=0.043 Score=51.29 Aligned_cols=120 Identities=16% Similarity=0.132 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC--------------CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 011378 313 YGILINGYCSMGHVTEAFRLWYEMVGK--------------GIKP-TLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVD 377 (487)
Q Consensus 313 ~~~li~~~~~~~~~~~a~~~~~~m~~~--------------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 377 (487)
+..+-..+.+.|++++|...|+..... ...| +...|..+-.+|.+.|++++|...+++..+. .
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--D 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--C
Confidence 444555555666666666666554430 0122 3456677777788888888888888877753 3
Q ss_pred C-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChHHHHH
Q 011378 378 P-DSISYNTLINGFVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSEL 436 (487)
Q Consensus 378 p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~ 436 (487)
| +...+..+-.+|...|++++|.+.+++..+. .| +...+..+...+.+.++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4556777778888888888888888777653 34 44555666666666666665543
No 190
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.21 E-value=0.72 Score=42.22 Aligned_cols=168 Identities=9% Similarity=0.008 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC-ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC-C-CHHHHHHH
Q 011378 82 DRAKEVLDEMLQMGLSPD-TATYNTLLVESCRKE-NMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRN-G-QLDRALMY 157 (487)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~a~~~ 157 (487)
++|+++++.+.... |+ ...|+.--..+...+ ++++++++++.+....- -+..+|+.--.++.+. + ++++++++
T Consensus 71 e~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 71 ERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 35555555555422 22 233443333333344 36666666666654321 1334444433333333 3 55666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCC-------HH
Q 011378 158 FREMKSAGLVPDNVLYTIIINGYCRNGFVL--------EALKMRDEMLEKGCVMDVVTYNTILNGLCRAKM-------LT 222 (487)
Q Consensus 158 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~-------~~ 222 (487)
++++.+.. .-|...|+----.+.+.|..+ ++++..+++.+... -|-..|+..-..+.+.+. ++
T Consensus 148 ~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHH
Confidence 66665432 123334443333333322222 56666666665432 345556655555555554 45
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011378 223 EADDLFNEMLERGVFPDFYTFTTLIHGHCKDGN 255 (487)
Q Consensus 223 ~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~ 255 (487)
++.+.++++.... +-|...|+-+-..+.+.|+
T Consensus 226 eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 226 DELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 6666666665532 2355566555444444443
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.07 E-value=0.095 Score=41.98 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 011378 347 SCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKME 407 (487)
Q Consensus 347 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 407 (487)
.|..+-.+|.+.|++++|...++...+.. +.+...|..+-.+|...|++++|...+++..
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 34444444445555555555554444321 1123344444444455555555555444443
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.01 E-value=0.22 Score=39.76 Aligned_cols=69 Identities=9% Similarity=0.060 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011378 380 SISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRS 451 (487)
Q Consensus 380 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 451 (487)
...|..+-.+|.+.|++++|...+++..+.. ..+...|..+-.+|...|++++|...|++.... .|+-.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 3578888899999999999999998886642 235677888889999999999999999988764 45543
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.93 E-value=0.022 Score=52.60 Aligned_cols=145 Identities=8% Similarity=-0.018 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 011378 310 YISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLING 389 (487)
Q Consensus 310 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 389 (487)
...+..+-..+.+.|++++|...|+..... .|+... +...++.+++...+. ...|..+-.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345666666777778888888888776543 233221 111222222222111 1256677777
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHH-HHhcCCH
Q 011378 390 FVREENMDKAFALVSKMENQGLVP-DVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRS-TYTTLING-HVSQNNL 466 (487)
Q Consensus 390 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-ty~~l~~~-~~~~~~~ 466 (487)
|.+.|++++|...+++..+. .| +...|..+-.+|...|++++|...|++..+ +.|+.. .+..+... ....+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776553 34 566777788888888888888888887643 344332 33333333 2334566
Q ss_pred HHHHHHHHHHH
Q 011378 467 KEAFRFHDEML 477 (487)
Q Consensus 467 ~~a~~~~~~m~ 477 (487)
+.+.+++..|.
T Consensus 316 ~~a~~~~~~~l 326 (338)
T 2if4_A 316 QKQKEMYKGIF 326 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHHhh
Confidence 67777777776
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.048 Score=40.13 Aligned_cols=61 Identities=7% Similarity=0.059 Sum_probs=30.2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 382 SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
.+..+-..+...|++++|.+.+++..+.. ..+...|..+-..+.+.|++++|...+++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444445555555555555555443321 11334455555555555555555555555543
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.49 E-value=0.29 Score=39.01 Aligned_cols=61 Identities=13% Similarity=0.019 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 207 TYNTILNGLCRAKMLTEADDLFNEMLER-----GVFPD-FYTF----TTLIHGHCKDGNMNKALNLFDIMT 267 (487)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~-~~t~----~~li~~~~~~g~~~~a~~~~~~m~ 267 (487)
.|+.+-.++.+.|++++|...+++..+. .+.|+ ...| ...-.++...|++++|+..|+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 6667777777777777777777766653 12453 3456 666777777777777777776554
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.45 E-value=0.12 Score=38.38 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 363 KADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMI 442 (487)
Q Consensus 363 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 442 (487)
.|...+++..+.. +.+...+..+-..|...|++++|...+++..+.. ..+...|..+...|.+.|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566777766532 2356678888889999999999999998886642 2345678888889999999999999998876
Q ss_pred H
Q 011378 443 E 443 (487)
Q Consensus 443 ~ 443 (487)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.063 Score=39.46 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 311 ISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVS 373 (487)
Q Consensus 311 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (487)
..+..+-..+...|++++|...|+...... +.+...+..+-.+|.+.|++++|...+++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344445555555555555555555544331 22344455555555555555555555555543
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.41 E-value=0.21 Score=39.86 Aligned_cols=61 Identities=11% Similarity=-0.006 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCh-hhH----HHHHHHHHhcCChHHHHHHHHHHH
Q 011378 312 SYGILINGYCSMGHVTEAFRLWYEMVGK-----GIKPTL-VSC----NTIIKGYCRSGDASKADEFLSKMV 372 (487)
Q Consensus 312 t~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~-~~~----~~li~~~~~~~~~~~a~~~~~~m~ 372 (487)
.|+.+-.++...|++++|+..++.-... .+.|+. ..| ...-.++...|++++|...|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666777777777777777766655432 124432 244 555556666666666666666654
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.38 E-value=0.06 Score=49.58 Aligned_cols=112 Identities=10% Similarity=-0.028 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011378 241 YTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGY 320 (487)
Q Consensus 241 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 320 (487)
..+..+-..+.+.|++++|+..|+...+. .|+.. .+...|+.+++...+. ...|..+-.+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34555556666666677776666654432 12111 1112222222222111 12445555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 321 CSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMV 372 (487)
Q Consensus 321 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 372 (487)
.+.|++++|...++...... +.+...|..+-.+|...|++++|...+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555544321 2233444455555555555555555555443
No 200
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.32 E-value=0.11 Score=49.35 Aligned_cols=60 Identities=7% Similarity=-0.110 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 417 TYNVILTGFCRQGRMHDSELILWRMIEK-----GLN-PD-RSTYTTLINGHVSQNNLKEAFRFHDEM 476 (487)
Q Consensus 417 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~-p~-~~ty~~l~~~~~~~~~~~~a~~~~~~m 476 (487)
+++.|...|..+|++++|..++++..+. |-. |+ ..+|+.|-..|..+|++++|..++++-
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4555555555555555555555554321 110 11 124555555555555555555555443
No 201
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.74 Score=37.24 Aligned_cols=97 Identities=12% Similarity=0.178 Sum_probs=43.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHH
Q 011378 322 SMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFA 401 (487)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 401 (487)
..|+++.|.++.+++ .+...|..|-+...+.|+++-|+++|+.... +..|.-.|.-.|+.+...+
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 345555555544443 2344455555555555555555555554331 3333334444454444333
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 011378 402 LVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILW 439 (487)
Q Consensus 402 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 439 (487)
+-+.-...| -+++-...+-..|+++++.+++.
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 322222222 24444444444555555554443
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.12 E-value=0.27 Score=34.26 Aligned_cols=61 Identities=13% Similarity=0.233 Sum_probs=30.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 382 SYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
.+..+-..|...|++++|...+++..+.. ..+...+..+...+.+.|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444555555555555555443321 11334455555555566666666665555544
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.05 E-value=0.14 Score=48.75 Aligned_cols=91 Identities=8% Similarity=-0.041 Sum_probs=55.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC---CCCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHh-----CC-CCCCH-hh
Q 011378 352 IKGYCRSGDASKADEFLSKMVSEG---VDPD----SISYNTLINGFVREENMDKAFALVSKMEN-----QG-LVPDV-IT 417 (487)
Q Consensus 352 i~~~~~~~~~~~a~~~~~~m~~~g---~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g-~~p~~-~~ 417 (487)
+..+.+.|++++|..++++..+.. ..|+ ..+++.|...|...|++++|+.++++..+ .| -.|++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445556677777777777766431 2222 24667777777777777777777665532 11 12332 35
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 418 YNVILTGFCRQGRMHDSELILWRMI 442 (487)
Q Consensus 418 ~~~li~~~~~~g~~~~a~~~~~~m~ 442 (487)
++.|-..|..+|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6777777777777777777776654
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.00 E-value=0.26 Score=34.39 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 348 CNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 348 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
+..+-..+...|++++|...+++..+.. +.+...+..+-..|.+.|++++|...+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3334444444455555555554444321 11233444455555555555555555555443
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.94 E-value=0.27 Score=36.47 Aligned_cols=59 Identities=14% Similarity=-0.040 Sum_probs=24.7
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH
Q 011378 102 TYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREM 161 (487)
Q Consensus 102 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 161 (487)
.+..+-..+...|++++|...|++..+.. +.+...|..+..++.+.|++++|...|++.
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334444444444444444444443321 112333444444444444444444444443
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.89 E-value=0.19 Score=36.38 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=52.1
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 379 DSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 379 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
+...+..+-..|...|++++|...|++..+.. .-+...|..+-..|.+.|++++|...+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45678888889999999999999999887642 22456788888899999999999999888654
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.73 E-value=0.19 Score=36.42 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 207 TYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDI 265 (487)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~ 265 (487)
.|..+-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|...|+.++|...|+.
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444444444444322 11233444444444444444444444443
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.62 E-value=0.24 Score=47.12 Aligned_cols=58 Identities=12% Similarity=0.048 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 011378 207 TYNTILNGLCRAKMLTEADDLFNEMLER-----G-VFPD-FYTFTTLIHGHCKDGNMNKALNLFD 264 (487)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~-~~t~~~li~~~~~~g~~~~a~~~~~ 264 (487)
+++.+...|...|++++|..++++..+- | -.|+ ..+++.|-..|...|++++|+.+++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~ 395 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLR 395 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3444444444444444444444443321 1 1121 2334445555555555555555444
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.49 E-value=0.21 Score=47.47 Aligned_cols=61 Identities=5% Similarity=-0.189 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 206 VTYNTILNGLCRAKMLTEADDLFNEMLER-----G-VFPD-FYTFTTLIHGHCKDGNMNKALNLFDIM 266 (487)
Q Consensus 206 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m 266 (487)
.+++.|...|...|++++|..++++..+- | -.|+ ..+++.|-..|...|+.++|+.+++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 45666666666666666666666655431 1 1232 235666666666666666666666543
No 210
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.74 E-value=2.1 Score=34.55 Aligned_cols=44 Identities=27% Similarity=0.346 Sum_probs=20.0
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 011378 77 KKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEM 126 (487)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 126 (487)
+.|+++.|.++.+++ -+...|..|-......|+++-|++.|...
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444433 23444444444444444444444444443
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.19 E-value=1.8 Score=39.74 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=41.4
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 011378 378 PDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYT 454 (487)
Q Consensus 378 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~ 454 (487)
.+..+|.++-..+...|++++|...+++....+ |+...|..+-..+.-.|+.++|...+.+.... .|...||.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 345556555555555566666666666665543 55555544445555666666666666655442 45555543
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.18 E-value=2.3 Score=39.03 Aligned_cols=62 Identities=15% Similarity=-0.016 Sum_probs=35.8
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 413 PDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEM 476 (487)
Q Consensus 413 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m 476 (487)
.+...|.++...+...|++++|...+++....+ |+...|..+-..+...|++++|...+++-
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345555555555555566666666666665543 55555555555666666666666665543
No 213
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=92.78 E-value=5.5 Score=36.09 Aligned_cols=220 Identities=12% Similarity=0.113 Sum_probs=134.6
Q ss_pred HhcCChh-HHHHHHHHHhhCCCCCCcc-chHH---HHHHHHhcC-------ChhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011378 41 CREGFLE-EAFQLMNSMSGKGLKPGVF-TYNS---LINGLCKKG-------RCDRAKEVLDEMLQMGLSPDTATYNTLLV 108 (487)
Q Consensus 41 ~~~~~~~-~a~~~~~~m~~~~~~p~~~-~~~~---li~~~~~~~-------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 108 (487)
.+.|.++ +|+++++.+... .|+.. +|+. ++....+.. .+++++.+++.+.... +-+..+|+---.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4556554 788888887763 34432 2442 233333211 1577888888877642 235566665555
Q ss_pred HHHccC--ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--
Q 011378 109 ESCRKE--NMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQ-LDRALMYFREMKSAGLVPDNVLYTIIINGYCRN-- 183 (487)
Q Consensus 109 ~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-- 183 (487)
.+.+.+ ++++++++++.+.+.. +-|...|+.--.+..+.|. ++++++.++.+.+... -|...|+..-..+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhh
Confidence 555555 4788888888887754 2366777776666677777 5888888888876542 2444555554444443
Q ss_pred ------------CCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCC-
Q 011378 184 ------------GFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRA-----------KMLTEADDLFNEMLERGVFPD- 239 (487)
Q Consensus 184 ------------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~- 239 (487)
+.++++++.+....... +-|...|+-+--.+.+. +.++++.+.++++.+.. ||
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd~ 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PEN 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TTC
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--ccc
Confidence 34677888877776543 23555666444444444 45788888888888743 43
Q ss_pred HHHHHHHH---HHHHhcCCHHHHHHHHHHHHH
Q 011378 240 FYTFTTLI---HGHCKDGNMNKALNLFDIMTQ 268 (487)
Q Consensus 240 ~~t~~~li---~~~~~~g~~~~a~~~~~~m~~ 268 (487)
...+..++ ...-..+..+++...+..+.+
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 33333332 233346777888888887764
No 214
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=92.55 E-value=5.9 Score=35.89 Aligned_cols=220 Identities=11% Similarity=0.065 Sum_probs=138.2
Q ss_pred HhcCChh-hHHHHHHHHHHCCCCCCH-HHHHH---HHHHHHccC-------ChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 011378 76 CKKGRCD-RAKEVLDEMLQMGLSPDT-ATYNT---LLVESCRKE-------NMSEAEEIFCEMSRRGVAPDIVSFSTLIG 143 (487)
Q Consensus 76 ~~~~~~~-~a~~~~~~m~~~g~~~~~-~~~~~---ll~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 143 (487)
.+.|.++ +|++..+.+... .|+. ..|+. ++....+.. .+++++.+++.+.... +-+..+|+.--.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456655 788888888764 3443 33443 233222211 2678888998887653 236667777666
Q ss_pred HHHhCC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhc--
Q 011378 144 IFSRNG--QLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGF-VLEALKMRDEMLEKGCVMDVVTYNTILNGLCRA-- 218 (487)
Q Consensus 144 ~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-- 218 (487)
++.+.| .+++++.+++.+.+.. .-|...|+.---.+.+.|. .+++++.++.+.+... -|...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhh
Confidence 666666 4889999999988743 2355667666666667777 5888899888887643 4566676655554443
Q ss_pred ------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCe
Q 011378 219 ------------KMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKD-----------GNMNKALNLFDIMTQKSIKPDI 275 (487)
Q Consensus 219 ------------~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~ 275 (487)
+.++++.+.+....... +-|...|+-+--.+.+. +.++++++.++.+.+. .||.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 45778888888877643 33566666444444443 3578888888877754 3443
Q ss_pred -eehHH---HHHHHHccCCHHHHHHHHHHHHh
Q 011378 276 -VTYNT---LIDGFCKVGEMEKANKLWADMIS 303 (487)
Q Consensus 276 -~~~~~---li~~~~~~g~~~~a~~~~~~m~~ 303 (487)
.++-+ ++......|..+++...+.++..
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 22222 22333346677788888887764
No 215
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.54 E-value=2.8 Score=32.08 Aligned_cols=67 Identities=13% Similarity=0.089 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 011378 310 YISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVD 377 (487)
Q Consensus 310 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 377 (487)
......-++.....|.-+.-.++..++.. ..+|+....-.+-.+|.+.|+..++.+++.+.-++|++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33444555555566666666666666433 33555555556666666666666666666666666653
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=92.05 E-value=0.56 Score=33.40 Aligned_cols=52 Identities=12% Similarity=0.232 Sum_probs=25.7
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCC-CHh-hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 390 FVREENMDKAFALVSKMENQGLVP-DVI-TYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 390 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
+.+.|++++|.+.+++..+. .| +.. .|..+-..|...|++++|...|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555544432 22 223 444455555555555555555555544
No 217
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=91.35 E-value=0.69 Score=36.77 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 011378 116 MSEAEEIFCEMSRRGVAP-DIVSFSTLIGIFSRN-----------GQLDRALMYFREMKSAGLVPDNVLYTIIING 179 (487)
Q Consensus 116 ~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 179 (487)
+++|...|++..+. .| +...|..+-.+|... |++++|.+.|++..+ +.|+...|...+..
T Consensus 62 ~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 62 IQEAITKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 44666666666553 23 345566666666654 478888888887776 35766666555554
No 218
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=91.18 E-value=0.53 Score=37.43 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcc
Q 011378 362 SKADEFLSKMVSEGVDPD-SISYNTLINGFVRE 393 (487)
Q Consensus 362 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 393 (487)
++|+..|++.++. .|+ ...|..|-.+|...
T Consensus 63 ~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 63 QEAITKFEEALLI--DPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHh
Confidence 3455555544432 232 23444444444433
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.85 E-value=1.8 Score=31.39 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=50.5
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHhC------CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011378 379 DSISYNTLINGFVREENMDKAFALVSKMENQ------GLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDR 450 (487)
Q Consensus 379 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 450 (487)
+..-+-.|-..+.+.++++.|...++...+. +-.+....+..+..++.+.|++++|...+++... +.|+-
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 3444556777788889999999888765432 1123456788888888999999999998888765 35654
No 220
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=90.81 E-value=4.3 Score=38.34 Aligned_cols=356 Identities=17% Similarity=0.154 Sum_probs=162.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHh--HHHHHHHHHH
Q 011378 71 LINGLCKKGRCDRAKEVLDEMLQMGLSPDTAT--YNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIV--SFSTLIGIFS 146 (487)
Q Consensus 71 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~ 146 (487)
.+...++.|+.+-+.. +.+.|..|+... ..+.|...+..|+.+-+..++ +.|..++.. .-.+.+...+
T Consensus 17 ~L~~Aa~~g~~~~v~~----Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLPIVKN----LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHHHHHH----HHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHH
Confidence 3444456777654444 444566655321 223455566677766555444 345444321 1123455556
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCCh---hhHHHHHHHHHhcCCH
Q 011378 147 RNGQLDRALMYFREMKSAGLVPDNVL--YTIIINGYCRNGFVLEALKMRDEMLEKGCVMDV---VTYNTILNGLCRAKML 221 (487)
Q Consensus 147 ~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~~~~ 221 (487)
+.|+.+-+..+++ .|..|+... -.+.+...++.|+.+-+.. +.+.+..++. ..++ .+...++.|+.
T Consensus 89 ~~g~~~~v~~Ll~----~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~ 159 (437)
T 1n11_A 89 RIGHTNMVKLLLE----NNANPNLATTAGHTPLHIAAREGHVETVLA----LLEKEASQACMTKKGFT-PLHVAAKYGKV 159 (437)
T ss_dssp HHTCHHHHHHHHH----HTCCTTCCCTTCCCHHHHHHHHTCHHHHHH----HHHTTCCSCCCCTTSCC-HHHHHHHTTCH
T ss_pred HCCCHHHHHHHHh----CCCCCCCCCCCCCcHHHHHHHcCCHHHHHH----HHhCCCCCcCCCCCCCC-HHHHHHHcCCH
Confidence 7777765554444 354443221 1123334455666654443 3344443322 2222 33444566666
Q ss_pred HHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeeh--HHHHHHHHccCCHHHHHHH
Q 011378 222 TEADDLFNEMLERGVFPDFYT--FTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTY--NTLIDGFCKVGEMEKANKL 297 (487)
Q Consensus 222 ~~a~~~~~~m~~~~~~~~~~t--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~ 297 (487)
+-+.. +.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++...+ .+.+...++.|+.+-+..+
T Consensus 160 ~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 231 (437)
T 1n11_A 160 RVAEL----LLERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231 (437)
T ss_dssp HHHHH----HHHTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHH----HHhCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 54443 344555443211 112344455666654 44455556655544321 2334444566776555444
Q ss_pred HHHHHhCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHH
Q 011378 298 WADMISRKISPNYI---SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLV---SCNTIIKGYCRSGDASKADEFLSKM 371 (487)
Q Consensus 298 ~~~m~~~~~~p~~~---t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m 371 (487)
+ +.|..++.. -.+.|. ..+..|+.+ +.+.+.+.|..++.. -.+.|. ..++.|+.+-+ +.+
T Consensus 232 l----~~g~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~----~~L 297 (437)
T 1n11_A 232 L----QYGGSANAESVQGVTPLH-LAAQEGHAE----MVALLLSKQANGNLGNKSGLTPLH-LVAQEGHVPVA----DVL 297 (437)
T ss_dssp H----HTTCCTTCCCTTCCCHHH-HHHHTTCHH----HHHHHHTTTCCTTCCCTTCCCHHH-HHHHHTCHHHH----HHH
T ss_pred H----HcCCCCCCCCCCCCCHHH-HHHHCCCHH----HHHHHHhcCCCCCCCCCCCCCHHH-HHHHcCCHHHH----HHH
Confidence 4 344433322 223333 334556654 333444555554432 223333 34455665543 333
Q ss_pred HHCCCCCChh---hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhh---HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011378 372 VSEGVDPDSI---SYNTLINGFVREENMDKAFALVSKMENQGLVPDVIT---YNVILTGFCRQGRMHDSELILWRMIEKG 445 (487)
Q Consensus 372 ~~~g~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g 445 (487)
.+.|..++.. -.+. +...+..|+.+-+..++ +.|..++... ++. +...++.|..+-+ +-+.+.|
T Consensus 298 l~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll----~~gad~n~~~~~g~t~-L~~A~~~g~~~iv----~~Ll~~g 367 (437)
T 1n11_A 298 IKHGVMVDATTRMGYTP-LHVASHYGNIKLVKFLL----QHQADVNAKTKLGYSP-LHQAAQQGHTDIV----TLLLKNG 367 (437)
T ss_dssp HHHTCCTTCCCSSCCCH-HHHHHHSSCSHHHHHHH----HTTCCTTCCCTTSCCH-HHHHHHTTCHHHH----HHHHHTT
T ss_pred HhCCccCCCCCCCCCCH-HHHHHHcCcHHHHHHHH----hcCCCCCCCCCCCCCH-HHHHHHCChHHHH----HHHHHCc
Confidence 4445554432 2223 33444566665444333 3455544322 233 3334456665433 4455567
Q ss_pred CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 446 LNPDRST--YTTLINGHVSQNNLKEAFRFHDEM 476 (487)
Q Consensus 446 ~~p~~~t--y~~l~~~~~~~~~~~~a~~~~~~m 476 (487)
..|+... -.+-+....+.|.. +..+++...
T Consensus 368 a~~~~~~~~g~t~l~~A~~~g~~-~~~~~l~~~ 399 (437)
T 1n11_A 368 ASPNEVSSDGTTPLAIAKRLGYI-SVTDVLKVV 399 (437)
T ss_dssp CCSCCCCSSSCCHHHHHHHTTCH-HHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHcCcH-HHHHHHHhc
Confidence 7776431 11122333444543 444555444
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=90.46 E-value=3.7 Score=32.22 Aligned_cols=85 Identities=15% Similarity=0.107 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHCCCCC-C-HhHHHHHHHHHHhCCCHHHHHH
Q 011378 82 DRAKEVLDEMLQMGLSPDTATYNTLLVESCRKE---NMSEAEEIFCEMSRRGVAP-D-IVSFSTLIGIFSRNGQLDRALM 156 (487)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~g~~p-~-~~~~~~li~~~~~~g~~~~a~~ 156 (487)
..+.+-|.+..+.|. ++..+.-.+-.++++.+ +++++..+|++..+.. .| + ...+=.+--+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344555555555443 56666666677777777 5668888888877754 23 1 2223335556788899999998
Q ss_pred HHHHHHHCCCCCCh
Q 011378 157 YFREMKSAGLVPDN 170 (487)
Q Consensus 157 ~~~~m~~~g~~~~~ 170 (487)
+++.+.+ +.|+.
T Consensus 93 y~~~lL~--ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHh--cCCCC
Confidence 8888876 35654
No 222
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=90.37 E-value=4.4 Score=35.28 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=10.6
Q ss_pred HHHHHHHhcCChhHHHHHH
Q 011378 35 TLINAYCREGFLEEAFQLM 53 (487)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~ 53 (487)
+.+...++.|+++....++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH
Confidence 4455556667665554444
No 223
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=89.93 E-value=2 Score=30.30 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=22.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 320 YCSMGHVTEAFRLWYEMVGKGIKPTLV-SCNTIIKGYCRSGDASKADEFLSKMV 372 (487)
Q Consensus 320 ~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~ 372 (487)
+...|++++|...++...... +.+.. .+..+-.+|...|+.++|...+++..
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444443321 11223 34444444444445555544444444
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=89.87 E-value=2.9 Score=32.80 Aligned_cols=65 Identities=11% Similarity=0.105 Sum_probs=29.2
Q ss_pred CChhhHHHHHHHHhccC---CHHHHHHHHHHHHhCCCCC-C-HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 378 PDSISYNTLINGFVREE---NMDKAFALVSKMENQGLVP-D-VITYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 378 p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p-~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
++..+.-.+--++++.+ +.+++..+++..-+.. .| + ...+=.|--+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34433334444444444 3445555555444332 23 1 22222233344555666666665555544
No 225
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=89.36 E-value=4.5 Score=35.21 Aligned_cols=15 Identities=13% Similarity=0.388 Sum_probs=6.8
Q ss_pred HHHHHHHHHCCCCCC
Q 011378 365 DEFLSKMVSEGVDPD 379 (487)
Q Consensus 365 ~~~~~~m~~~g~~p~ 379 (487)
.++++.+.+.|..++
T Consensus 199 ~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 199 EAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHcCCCCC
Confidence 344444444454443
No 226
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=88.84 E-value=19 Score=35.42 Aligned_cols=136 Identities=10% Similarity=-0.016 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHH
Q 011378 116 MSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNG--QLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNG-FVLEALKM 192 (487)
Q Consensus 116 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~ 192 (487)
++++.+.++.+.+.. +-+..+|+.=-.++.+.| +++++++.++++.+.. .-+...|+.--..+.+.| ..+++++.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHH
Confidence 444444444444322 113334444334444444 3455555555554422 112334444333344444 44444444
Q ss_pred HHHHHHcCCcCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011378 193 RDEMLEKGCVMDVVTYNTILNGLCRA--------------KMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGN 255 (487)
Q Consensus 193 ~~~m~~~g~~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~ 255 (487)
++++.+... -|...|+.....+.+. +.++++.+.+++..... +-|...|.-.-..+.+.++
T Consensus 167 ~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 167 TDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHCC-CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 444443221 2333444333333321 34567777777766532 2245566665555555554
No 227
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=88.66 E-value=3.1 Score=35.32 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=9.0
Q ss_pred HHhcCChhHHHHHHHHHhhCC
Q 011378 40 YCREGFLEEAFQLMNSMSGKG 60 (487)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~ 60 (487)
.++.|+.+.+..+++.+...|
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 334444444444444433333
No 228
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=88.42 E-value=2.4 Score=35.95 Aligned_cols=50 Identities=18% Similarity=-0.029 Sum_probs=22.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHH
Q 011378 212 LNGLCRAKMLTEADDLFNEMLERGVFPDFYT--FTTLIHGHCKDGNMNKALNLFDI 265 (487)
Q Consensus 212 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t--~~~li~~~~~~g~~~~a~~~~~~ 265 (487)
+...++.|+.+-+..++ +.|..++... -.+.+....+.|+.+-+.-+++.
T Consensus 181 L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLL----EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHHHTCHHHHHHHH----HHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 44445556655443333 3344333211 11234445566666655555443
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.28 E-value=5.2 Score=28.25 Aligned_cols=46 Identities=11% Similarity=0.074 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 396 MDKAFALVSKMENQGLVPD-VITYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 396 ~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
.++|..++++.... .|+ +.....+-..+.+.|++++|...++++.+
T Consensus 25 ~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555555544432 232 23333333444555555555555555543
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.01 E-value=7.5 Score=29.75 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=32.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011378 383 YNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGL 446 (487)
Q Consensus 383 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 446 (487)
.+.-++..+..|+-|+-.++...+.. +-+|++...--+..+|.+-|+..++..++.+.-++|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34444555555555555555554311 1234444445555555555555555555555555554
No 231
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.94 E-value=2.5 Score=30.27 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011378 395 NMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLI 457 (487)
Q Consensus 395 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~ 457 (487)
+.-+..+-+..+-...+.|++......+.+|.+-+++..|.++|+-.+.+- .+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 444555555555566667777777777777777777777777777666442 22233455544
No 232
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=87.87 E-value=22 Score=34.98 Aligned_cols=174 Identities=11% Similarity=0.071 Sum_probs=116.8
Q ss_pred HhcC-ChhHHHHHHHHHhhCCCCCCc-cchHHHHHHHHhcCC----------hhhHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011378 41 CREG-FLEEAFQLMNSMSGKGLKPGV-FTYNSLINGLCKKGR----------CDRAKEVLDEMLQMGLSPDTATYNTLLV 108 (487)
Q Consensus 41 ~~~~-~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 108 (487)
.+.| ..++|++.++.+... .|+- ..|+.-=..+.+.++ ++++++.++.+.+.. +-+...|+---.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w 115 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 115 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3444 446789999888763 3443 345543334444444 889999999988643 235667777677
Q ss_pred HHHccC--ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--
Q 011378 109 ESCRKE--NMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNG-QLDRALMYFREMKSAGLVPDNVLYTIIINGYCRN-- 183 (487)
Q Consensus 109 ~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-- 183 (487)
.+.+.+ +++++.+.++.+.+... -|...|+.--.+..+.| ..+++++.++++.+.. .-|...|+..-..+.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSC
T ss_pred HHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcc
Confidence 777778 67999999999988653 37778888777778888 8899999988886543 22455666666655552
Q ss_pred ------------CCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCC
Q 011378 184 ------------GFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKM 220 (487)
Q Consensus 184 ------------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 220 (487)
+.++++.+.+.+..... +-|...|+-.-..+.+.+.
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 44677777777766533 2355567666666655555
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=87.86 E-value=3.9 Score=29.51 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 210 TILNGLCRAKMLTEADDLFNEMLERG------VFPDFYTFTTLIHGHCKDGNMNKALNLFDIM 266 (487)
Q Consensus 210 ~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 266 (487)
.|-..+.+.+++..|...|+...+.- -.+....+..+-.++.+.|+.+.|+..++..
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34444444444444444444433210 0122333444444444444444444444433
No 234
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.75 E-value=6.5 Score=27.75 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011378 221 LTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQK 269 (487)
Q Consensus 221 ~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 269 (487)
.++|..++++..+.. +-++.....+-..+...|++++|+..|+.+.+.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456666666655432 123444455555566666666666666655543
No 235
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.11 E-value=7.4 Score=27.90 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 011378 116 MSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIIN 178 (487)
Q Consensus 116 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 178 (487)
.=++.+-++.+....+.|++....+.+++|-|.+++..|.++|+-.+.+ +.+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 3355566666667777777777777888888888888888887777653 2222345555554
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.66 E-value=9.4 Score=29.80 Aligned_cols=112 Identities=12% Similarity=0.049 Sum_probs=64.4
Q ss_pred ChhhHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCChh-hHHHHHHHH------hccCCHHHHHHHHHHHHhCC
Q 011378 344 TLVSCNTIIKGYCRSGDA------SKADEFLSKMVSEGVDPDSI-SYNTLINGF------VREENMDKAFALVSKMENQG 410 (487)
Q Consensus 344 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~-~~~~li~~~------~~~~~~~~a~~~~~~m~~~g 410 (487)
|..+|-..++-.-+.|+. ++..++|+.... .++|+.. .|..-|..+ ...++.++|.++|+.+...+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 344555555555555555 555566665543 3444421 111111111 23378888888888885433
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011378 411 LVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLIN 458 (487)
Q Consensus 411 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~ 458 (487)
-+- ...|-.....=.++|++..|++++.+....+.+|.. ..+..+.
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~-~le~a~~ 136 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE-MLEIALR 136 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH-HHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH-HHHHHHH
Confidence 233 555666666667899999999999988877665543 3333333
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=85.61 E-value=8.2 Score=29.10 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=51.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHH---HHHHHHHHHhCCCCC-CHhhHHH-HHHHHHhcCCh
Q 011378 357 RSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDK---AFALVSKMENQGLVP-DVITYNV-ILTGFCRQGRM 431 (487)
Q Consensus 357 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~p-~~~~~~~-li~~~~~~g~~ 431 (487)
....+..+.+-+......|. |+..+--.+-.++++....++ +..+++..-..+ .| ....+.- |.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 33444555555655554444 555555555666777776555 667776665542 23 2333333 33477888888
Q ss_pred HHHHHHHHHHHHc
Q 011378 432 HDSELILWRMIEK 444 (487)
Q Consensus 432 ~~a~~~~~~m~~~ 444 (487)
++|.+.++.+++.
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888764
No 238
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=84.68 E-value=3.2 Score=35.10 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=21.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 011378 422 LTGFCRQGRMHDSELILWRMIEKGLNPDRSTYT--TLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 422 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~--~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
+...++.|..+-+..+ .+.|..|+..... +-+....+.|+.+-+..+++...
T Consensus 181 L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLL----LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHHHHTCHHHHHHH----HHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence 3444455555443333 3335544432111 12333345565555544444333
No 239
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=84.51 E-value=19 Score=33.84 Aligned_cols=357 Identities=17% Similarity=0.155 Sum_probs=163.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCccc--hHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 011378 35 TLINAYCREGFLEEAFQLMNSMSGKGLKPGVFT--YNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTA--TYNTLLVES 110 (487)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~~ 110 (487)
+.+...+..|+.+-+..++ ++|..|+... ....+...++.|+.+-+.-+++ .|..++.. .-.+.|...
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 87 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCA 87 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHH
Confidence 3456666777776555444 3455554322 1233444456676654444443 34333221 112234445
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCC
Q 011378 111 CRKENMSEAEEIFCEMSRRGVAPDIVS--FSTLIGIFSRNGQLDRALMYFREMKSAGLVPD---NVLYTIIINGYCRNGF 185 (487)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~ 185 (487)
+..|+.+-+. .+.+.|..|+... -.+.+...++.|+.+.+..+++. +..++ ..-++ .+...++.|+
T Consensus 88 ~~~g~~~~v~----~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~g~t-~L~~A~~~g~ 158 (437)
T 1n11_A 88 ARIGHTNMVK----LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK----EASQACMTKKGFT-PLHVAAKYGK 158 (437)
T ss_dssp HHHTCHHHHH----HHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TCCSCCCCTTSCC-HHHHHHHTTC
T ss_pred HHCCCHHHHH----HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC----CCCCcCCCCCCCC-HHHHHHHcCC
Confidence 5666665443 3444455443221 12344555667777766655543 32221 11122 3333455566
Q ss_pred HHHHHHHHHHHHHcCCcCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHH
Q 011378 186 VLEALKMRDEMLEKGCVMDVVT--YNTILNGLCRAKMLTEADDLFNEMLERGVFPDFYT--FTTLIHGHCKDGNMNKALN 261 (487)
Q Consensus 186 ~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t--~~~li~~~~~~g~~~~a~~ 261 (487)
.+ +++.+.+.|..++... -.+.+...+..|+.+- .+.+.+.|..|+... -.+.+...+..|+.+.+..
T Consensus 159 ~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 230 (437)
T 1n11_A 159 VR----VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDI----VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 230 (437)
T ss_dssp HH----HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHH----HHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 54 3444555665554321 1123344455666543 344445554443221 1223445556677655443
Q ss_pred HHHHHHHCCCCCCee---ehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHH
Q 011378 262 LFDIMTQKSIKPDIV---TYNTLIDGFCKVGEMEKANKLWADMISRKISPNY---ISYGILINGYCSMGHVTEAFRLWYE 335 (487)
Q Consensus 262 ~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~t~~~li~~~~~~~~~~~a~~~~~~ 335 (487)
+.+.|..++.. ..+. +...+..|..+-+..++ +.+..++. .-.+.|. ..+..|+.+-+ +.
T Consensus 231 ----Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~----~~ 296 (437)
T 1n11_A 231 ----LLQYGGSANAESVQGVTP-LHLAAQEGHAEMVALLL----SKQANGNLGNKSGLTPLH-LVAQEGHVPVA----DV 296 (437)
T ss_dssp ----HHHTTCCTTCCCTTCCCH-HHHHHHTTCHHHHHHHH----TTTCCTTCCCTTCCCHHH-HHHHHTCHHHH----HH
T ss_pred ----HHHcCCCCCCCCCCCCCH-HHHHHHCCCHHHHHHHH----hcCCCCCCCCCCCCCHHH-HHHHcCCHHHH----HH
Confidence 44455444332 2223 33445667765544443 34433332 1222333 33455666533 33
Q ss_pred HHhCCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh---HHHHHHHHhccCCHHHHHHHHHHHHhC
Q 011378 336 MVGKGIKPTLV---SCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSIS---YNTLINGFVREENMDKAFALVSKMENQ 409 (487)
Q Consensus 336 m~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~ 409 (487)
+.+.|..++.. -.+.|. ..+..|+.+- ++.+.+.|..++... ++.| ...+..|+.+-+ +.+.+.
T Consensus 297 Ll~~g~~~~~~~~~g~t~L~-~A~~~g~~~~----v~~Ll~~gad~n~~~~~g~t~L-~~A~~~g~~~iv----~~Ll~~ 366 (437)
T 1n11_A 297 LIKHGVMVDATTRMGYTPLH-VASHYGNIKL----VKFLLQHQADVNAKTKLGYSPL-HQAAQQGHTDIV----TLLLKN 366 (437)
T ss_dssp HHHHTCCTTCCCSSCCCHHH-HHHHSSCSHH----HHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHH----HHHHHT
T ss_pred HHhCCccCCCCCCCCCCHHH-HHHHcCcHHH----HHHHHhcCCCCCCCCCCCCCHH-HHHHHCChHHHH----HHHHHC
Confidence 44445544432 223333 3445677654 444455666654322 2333 334456766544 344455
Q ss_pred CCCCCHhh--HHHHHHHHHhcCChHHHHHHHHHH
Q 011378 410 GLVPDVIT--YNVILTGFCRQGRMHDSELILWRM 441 (487)
Q Consensus 410 g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m 441 (487)
|..|+... -.+-+....+.|.. +..++++..
T Consensus 367 ga~~~~~~~~g~t~l~~A~~~g~~-~~~~~l~~~ 399 (437)
T 1n11_A 367 GASPNEVSSDGTTPLAIAKRLGYI-SVTDVLKVV 399 (437)
T ss_dssp TCCSCCCCSSSCCHHHHHHHTTCH-HHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHcCcH-HHHHHHHhc
Confidence 66665421 12233334555553 333444443
No 240
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=84.33 E-value=11 Score=33.27 Aligned_cols=93 Identities=11% Similarity=0.047 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhC-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCHH
Q 011378 117 SEAEEIFCEMSRRGVAPD---IVSFSTLIGIFSRN-----GQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRN-GFVL 187 (487)
Q Consensus 117 ~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~~~~ 187 (487)
..|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++....+..-+..++...-+.+++. |+.+
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 344455555544 3455 55788888889984 99999999999988754322366777777888885 8899
Q ss_pred HHHHHHHHHHHcCCc--CChhhHHHH
Q 011378 188 EALKMRDEMLEKGCV--MDVVTYNTI 211 (487)
Q Consensus 188 ~a~~~~~~m~~~g~~--~~~~~~~~l 211 (487)
++.+.+++-...... |+....|.+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 999999998887666 665555443
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.02 E-value=4.7 Score=37.55 Aligned_cols=67 Identities=10% Similarity=0.111 Sum_probs=41.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCCHHH
Q 011378 385 TLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMI-----EKGLNPDRST 452 (487)
Q Consensus 385 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~t 452 (487)
.++.++...|+.++|...+..+... -..+...|..++.++.+.|+..+|...|+++. +.|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4455566667777776666655432 12355567777777777777777777666654 3477777654
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.96 E-value=29 Score=32.81 Aligned_cols=92 Identities=15% Similarity=0.092 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC--hhhH
Q 011378 315 ILINGYCSMGHVTEAFRLWYEMVGK--GIKPT---LVSCNTIIKGYCRSGDASKADEFLSKMVS----EGVDPD--SISY 383 (487)
Q Consensus 315 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~--~~~~ 383 (487)
.|...+-..|++.+|.++..++... |.-.. ...+...++.|...+++.+|..++++... ....|+ ...|
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 4455555566666666666655422 21111 12445556666677777777776666531 222222 1245
Q ss_pred HHHHHHHhccCCHHHHHHHHHHH
Q 011378 384 NTLINGFVREENMDKAFALVSKM 406 (487)
Q Consensus 384 ~~li~~~~~~~~~~~a~~~~~~m 406 (487)
...+..+...+++.+|...|-+.
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Confidence 55556666667776666655444
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.70 E-value=33 Score=32.46 Aligned_cols=187 Identities=11% Similarity=0.071 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHH----hc
Q 011378 254 GNMNKALNLFDIMTQK-----SIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISR-KISPNYISYGILINGYC----SM 323 (487)
Q Consensus 254 g~~~~a~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~----~~ 323 (487)
|+++.|++.+-.+.+. ...........++..|.+.|+++...+.+.-+... |..+... ..++..+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcC
Confidence 6788888777555432 12223345677788888888888877766554432 3333222 23333322 12
Q ss_pred CCHHHHHHHHHHHHhCCCCCCh--------hhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---hhhHHHHHHHH
Q 011378 324 GHVTEAFRLWYEMVGKGIKPTL--------VSCNTIIKGYCRSGDASKADEFLSKMVSE--GVDPD---SISYNTLINGF 390 (487)
Q Consensus 324 ~~~~~a~~~~~~m~~~~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~li~~~ 390 (487)
...+.-..+.-.-.-..+.... .....|.+.|...|++.+|..++..+... |..+. ...+-.-+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222111110000001111111 12234566666777777777777766532 22221 23455555666
Q ss_pred hccCCHHHHHHHHHHHHh----CCCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 011378 391 VREENMDKAFALVSKMEN----QGLVPDV--ITYNVILTGFCRQGRMHDSELILWRMI 442 (487)
Q Consensus 391 ~~~~~~~~a~~~~~~m~~----~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~ 442 (487)
...+++.+|..++.+... ..-.|+. .-|...+..+...+++.+|.+.|.+..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666777777766665431 1111211 234555555556666666666555543
No 244
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=82.48 E-value=12 Score=33.10 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHcc-CCHHHHHHHHHHHHhCCCC
Q 011378 240 FYTFTTLIHGHCK-----DGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKV-GEMEKANKLWADMISRKIS 307 (487)
Q Consensus 240 ~~t~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~ 307 (487)
...|..+...|.. .|+.++|.+.|+...+.+-.-+..++...-+.++.. |+.+++.+.+.+.......
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3455566666666 366666666666555433222244555555556553 6666666666666655444
No 245
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=82.04 E-value=9 Score=32.30 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=9.5
Q ss_pred HhcCChhhHHHHHHHHHHCCC
Q 011378 76 CKKGRCDRAKEVLDEMLQMGL 96 (487)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~ 96 (487)
++.|+.+.+..+++.+.+.|.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcCC
Confidence 334455444444444444443
No 246
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=81.98 E-value=4.1e-05 Score=71.72 Aligned_cols=202 Identities=10% Similarity=0.099 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011378 239 DFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILIN 318 (487)
Q Consensus 239 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 318 (487)
|+..|..+|.+..+.|.+++-+..+...++..-.| .+=+.|+-+|++.+++.+.++++. .||..-...+-+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 34445555555555555555555554444332222 223355555555555444333321 244444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHH
Q 011378 319 GYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREENMDK 398 (487)
Q Consensus 319 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 398 (487)
-|...|.++.|.-+|..+ ..|..|-..+.+.|+++.|.+.-+ -.-++.||.-.-.+|+..+.+.-
T Consensus 153 rcf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~AVdaAr------KAns~ktWKeV~~ACvd~~EfrL 217 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR------KANSTRTWKEVCFACVDGKEFRL 217 (624)
T ss_dssp HHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGSSTTTTT------TCCSSCSHHHHTHHHHHSCTTTT
T ss_pred HHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHHHHHHH------hcCChhHHHHHHHHHhCchHHHH
Confidence 444555544444444322 122233334444555555433222 12356678888888888887766
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011378 399 AFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGL-NPDRSTYTTLINGHVSQNNLKEAFRF 472 (487)
Q Consensus 399 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~ty~~l~~~~~~~~~~~~a~~~ 472 (487)
|.-.--.+. .......-++..|-..|.+++-..+++.-. |+ +....+|+.|-=.|++- +++..++-
T Consensus 218 AqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 218 AQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF-KPQKMREH 284 (624)
T ss_dssp TTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHHHH
T ss_pred HHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc-CHHHHHHH
Confidence 544332222 112233456667888888888777766532 33 35667888887777765 34444433
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.07 E-value=10 Score=28.83 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011378 395 NMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLI 457 (487)
Q Consensus 395 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~ 457 (487)
+.-+..+-+..+-...+.|++.....-+.+|.+-+++..|.++|+-.+.+- .+....|.-++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 333344444444455566666666666666666666666666666655432 22233454443
No 248
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=80.38 E-value=2.4 Score=36.63 Aligned_cols=55 Identities=16% Similarity=0.062 Sum_probs=31.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCcc-------chHHHHHHHH--hcCChhhHHHHHHHH
Q 011378 37 INAYCREGFLEEAFQLMNSMSGKGLKPGVF-------TYNSLINGLC--KKGRCDRAKEVLDEM 91 (487)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~li~~~~--~~~~~~~a~~~~~~m 91 (487)
+...++.|+.+....+++.+.+.|..++.. -++.|..+.. +.|..+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 444556777777777777666666555532 3344544442 456666666555543
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.86 E-value=7.1 Score=36.34 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=56.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCC
Q 011378 417 TYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEMLQ-----RGFVPDD 485 (487)
Q Consensus 417 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~ 485 (487)
....++..+...|+.+++...+..+... -..+...|..++.+|.+.|+..+|.+.|++..+ -|+.|.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 3456778888999999999888887653 123777999999999999999999999998764 4999875
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.49 E-value=49 Score=35.75 Aligned_cols=91 Identities=12% Similarity=0.206 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc------------CCHHHHHHHHHHHHh-C-CCCC
Q 011378 348 CNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVRE------------ENMDKAFALVSKMEN-Q-GLVP 413 (487)
Q Consensus 348 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~------------~~~~~a~~~~~~m~~-~-g~~p 413 (487)
|..+++++...|++++|...+-.+.....+ ......|+...+.. |..+++.+++..... . -...
T Consensus 941 ~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~ 1018 (1139)
T 4fhn_B 941 THETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVES 1018 (1139)
T ss_dssp HHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCcccc
Confidence 455555555555555555555444443322 12233344433333 333344444432211 0 0111
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHH
Q 011378 414 DVITYNVILTGFCRQGRMHDSELILWR 440 (487)
Q Consensus 414 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 440 (487)
.+.-|..|-..+..+|++..|-.++.+
T Consensus 1019 ~p~Yy~iLYs~ri~r~dyR~AA~vmYe 1045 (1139)
T 4fhn_B 1019 QPCWYNILFSWRYKHQNYRDAAAIIYE 1045 (1139)
T ss_dssp STHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHhHhhhhccCChHHHHHHHHH
Confidence 112356665566677777766554443
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.45 E-value=16 Score=27.81 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 011378 118 EAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIIN 178 (487)
Q Consensus 118 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 178 (487)
+..+-++.+....+.|++....+.+++|-|.+++..|.++|+-.+.+ ..+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 55666777777888899888889999999999999999999888763 2333445666655
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=79.21 E-value=13 Score=37.82 Aligned_cols=127 Identities=18% Similarity=0.153 Sum_probs=74.4
Q ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHc------CCcCChh----
Q 011378 139 STLIGIFSRNGQ-LDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGF-VLEALKMRDEMLEK------GCVMDVV---- 206 (487)
Q Consensus 139 ~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~------g~~~~~~---- 206 (487)
..++..+...|+ .+.|..+|+++......-+......++..+.+.++ --+|.++..+..+. ...+...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 345555665666 57788888888775322222222233333333322 22344444333211 1111110
Q ss_pred --hH-HHHH----HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 207 --TY-NTIL----NGLCRAKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIM 266 (487)
Q Consensus 207 --~~-~~li----~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 266 (487)
.+ ..|+ .-+.+.|+++.|.++-++.... .+-+..+|-.|...|.+.|+++.|+-.+..+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 00 1122 3355689999999999987663 2346889999999999999999999888766
No 253
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=79.20 E-value=0.012 Score=55.49 Aligned_cols=219 Identities=13% Similarity=0.138 Sum_probs=96.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHh
Q 011378 138 FSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCR 217 (487)
Q Consensus 138 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 217 (487)
|+.|-.+..+.+++.+|++.|-+ .-|...|.-+|.+..+.|..++-.+.+...++. .-++..=+.|+.+|++
T Consensus 57 Ws~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 57 WSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAK 128 (624)
T ss_dssp SSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHT
T ss_pred HHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHh
Confidence 44455555555544444332211 123334555555555555555544444332222 1222333455555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeeehHHHHHHHHccCCHHHHHHH
Q 011378 218 AKMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVTYNTLIDGFCKVGEMEKANKL 297 (487)
Q Consensus 218 ~~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 297 (487)
.+++.+.++++. .||..-...+-+-|...|.++.|.-+|. ++.-|..|-.++.+.|++..|.+.
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys---------~isN~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN---------NVSNFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGG---------GSCCCTTTSSSSSSCSGGGSSTTT
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHH---------hCccHHHHHHHHHHHHHHHHHHHH
Confidence 555444333322 1333333444444445555444433332 222344444445555555544432
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 011378 298 WADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADEFLSKMVSEGVD 377 (487)
Q Consensus 298 ~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 377 (487)
- .-.-+..||--+-.+|...+.+.-|.-.--.++-.. | -...++.-|-..|.+++...+++.-. |..
T Consensus 193 A------rKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEagl--glE 259 (624)
T 3lvg_A 193 A------RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAAL--GLE 259 (624)
T ss_dssp T------TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHT--TST
T ss_pred H------HhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCC
Confidence 1 122355666666666666666655444322222111 1 11224445555666666555555433 221
Q ss_pred -CChhhHHHHHHHHhcc
Q 011378 378 -PDSISYNTLINGFVRE 393 (487)
Q Consensus 378 -p~~~~~~~li~~~~~~ 393 (487)
....+|+-|--.|++.
T Consensus 260 rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF 276 (624)
T ss_dssp TCCHHHHHHHHHHHHSS
T ss_pred chhHHHHHHHHHHHHhc
Confidence 2344555555555554
No 254
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=79.05 E-value=13 Score=31.08 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=11.7
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 011378 37 INAYCREGFLEEAFQLMNS 55 (487)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~ 55 (487)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 5555666666666666654
No 255
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=78.32 E-value=22 Score=27.75 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011378 219 KMLTEADDLFNEMLERGVFPDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSI 271 (487)
Q Consensus 219 ~~~~~a~~~~~~m~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 271 (487)
++.++|.++|+.+.+.+-.- ...|...-..=.+.|+++.|..++......+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 45666666666665432222 44444444445566666666666665554433
No 256
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=78.24 E-value=8.6 Score=31.35 Aligned_cols=17 Identities=0% Similarity=-0.042 Sum_probs=9.4
Q ss_pred HHHHhcCChhHHHHHHH
Q 011378 38 NAYCREGFLEEAFQLMN 54 (487)
Q Consensus 38 ~~~~~~~~~~~a~~~~~ 54 (487)
...+..|+.+....++.
T Consensus 10 ~~A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHHHTTCHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHH
Confidence 33345666666665553
No 257
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=74.49 E-value=51 Score=30.01 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 207 TYNTILNGLCRAKMLTEADDLFNEML 232 (487)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~ 232 (487)
....+|.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 45677777778888888887777764
No 258
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=73.17 E-value=4.9 Score=34.64 Aligned_cols=24 Identities=17% Similarity=0.157 Sum_probs=11.9
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCC
Q 011378 76 CKKGRCDRAKEVLDEMLQMGLSPD 99 (487)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~~ 99 (487)
++.|+.+....+++.+.+.|..++
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcc
Confidence 344555555555555544444444
No 259
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=72.11 E-value=89 Score=31.80 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=37.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011378 423 TGFCRQGRMHDSELILWRMIEKGLNPD-RSTYTTLINGHVSQNNLKEAFRFHDEM 476 (487)
Q Consensus 423 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~l~~~~~~~~~~~~a~~~~~~m 476 (487)
..|...|+++.|..+-++.... .|+ ..||..|...|...|+++.|+-.++-+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4455678888887777776542 444 678888888888888888888777766
No 260
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=72.03 E-value=33 Score=29.87 Aligned_cols=223 Identities=11% Similarity=0.037 Sum_probs=111.8
Q ss_pred hcCChhhHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHH
Q 011378 7 KDHKIDSAKMFLCEMEQKGV-YPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAK 85 (487)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 85 (487)
+..+.....+++.. .++ .+|..- .+.+...++.|+.+.+..+++ .|..++...-...+...++.|+.+-+.
T Consensus 8 ~~~~~~~v~~lL~~---~~~~~~d~~g-~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 8 NTWKSKQLKSFLSS---KDTFKADVHG-HSASYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp GGCCHHHHHHHHHS---TTTTCCCTTS-CCHHHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHH
T ss_pred HhcCHHHHHHHHHh---CCCCccCCCC-CCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 34445555555543 232 223322 345666677888876655554 454444432223444556677766444
Q ss_pred HHHHHHHHCCCCCCHH---HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhH---HHHHHHHHHhCCCHHHHHHHHH
Q 011378 86 EVLDEMLQMGLSPDTA---TYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVS---FSTLIGIFSRNGQLDRALMYFR 159 (487)
Q Consensus 86 ~~~~~m~~~g~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~ 159 (487)
. +.+.|..++.. -++ .+...+..|+.+-+.-++ +.|..++... +.+.+...+..|+.+-+..++
T Consensus 80 ~----Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll- 149 (285)
T 3kea_A 80 I----LLFSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL- 149 (285)
T ss_dssp H----HHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHH-
T ss_pred H----HHHCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHH----hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH-
Confidence 4 44456555432 223 344455667766554444 4455444322 235666667778876554444
Q ss_pred HHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011378 160 EMKSAGLVPDNV-LYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVV---TYNTILNGLCRAKMLTEADDLFNEMLERG 235 (487)
Q Consensus 160 ~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 235 (487)
+.|..+... .-.+.+...+..|..+-+..+++. |..++.. -++..+...++.|+. ++.+.+.+.|
T Consensus 150 ---~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~g 218 (285)
T 3kea_A 150 ---SEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY----MTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYD 218 (285)
T ss_dssp ---TTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH----HHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSC
T ss_pred ---hCCCccccccCCccHHHHHHHcChHHHHHHHHHc----CCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcC
Confidence 344333221 334445555677777655444433 3333322 223333444555665 3455556677
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011378 236 VFPDFYTFTTLIHGHCKDGNMNKALNLF 263 (487)
Q Consensus 236 ~~~~~~t~~~li~~~~~~g~~~~a~~~~ 263 (487)
..|+.... .-...|+.+-+.-++
T Consensus 219 ad~~~~~~-----~a~~~~~~~iv~~Ll 241 (285)
T 3kea_A 219 INIYSANL-----ENVLLDDAEIAKMII 241 (285)
T ss_dssp BCSTTTTG-----GGGTTTCHHHHHHHH
T ss_pred CCCCCCCh-----hhhhcCCHHHHHHHH
Confidence 77765542 224566665554444
No 261
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=71.93 E-value=26 Score=29.15 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=45.5
Q ss_pred hhHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCc---cchHHHHHHHHhcC
Q 011378 3 NALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGV---FTYNSLINGLCKKG 79 (487)
Q Consensus 3 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~ 79 (487)
...++.|+++....+++.-...-..+|..-+ +.+...++.|+.+-+. .+.+.|..++. ..++.+..+ ++.|
T Consensus 11 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A-~~~~ 84 (231)
T 3aji_A 11 CNLAYSGKLDELKERILADKSLATRTDQDSR-TALHWACSAGHTEIVE----FLLQLGVPVNDKDDAGWSPLHIA-ASAG 84 (231)
T ss_dssp HHHHHHTCHHHHHHHHHHCGGGGGCCCTTSC-CHHHHHHHHTCHHHHH----HHHHTTCCSCCCCTTSCCHHHHH-HHHT
T ss_pred HHHHHhCCHHHHHHHHHhchhhhhcCCCCCC-CHHHHHHHcCcHHHHH----HHHHhCCCCCCcCCCCCCHHHHH-HHcC
Confidence 3457788888888888764332112333333 3455556777765544 44455655543 234444333 4455
Q ss_pred ChhhHHHHHHHHHHCCCCCC
Q 011378 80 RCDRAKEVLDEMLQMGLSPD 99 (487)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~ 99 (487)
+.+ +++.+.+.|..++
T Consensus 85 ~~~----~v~~Ll~~g~~~~ 100 (231)
T 3aji_A 85 XDE----IVKALLVKGAHVN 100 (231)
T ss_dssp CHH----HHHHHHHTTCCTT
T ss_pred HHH----HHHHHHHcCCCCC
Confidence 544 4444455555443
No 262
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=70.21 E-value=38 Score=29.48 Aligned_cols=84 Identities=8% Similarity=0.045 Sum_probs=36.5
Q ss_pred chHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhH--HHHHHHH
Q 011378 67 TYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVS--FSTLIGI 144 (487)
Q Consensus 67 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~ 144 (487)
-++.|.. .++.|+.+.+..+ .+.|..++...-.+.|...+..|+.+-+..+ .+.|..++... -.+.+..
T Consensus 31 g~t~L~~-A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~L~~ 101 (285)
T 3kea_A 31 GHSASYY-AIADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNTALYY 101 (285)
T ss_dssp SCCHHHH-HHHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCHHHH
T ss_pred CCCHHHH-HHHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcHHHH
Confidence 3343333 3456665544433 3344444332222344455566665544333 34455443211 1123344
Q ss_pred HHhCCCHHHHHHHHH
Q 011378 145 FSRNGQLDRALMYFR 159 (487)
Q Consensus 145 ~~~~g~~~~a~~~~~ 159 (487)
.+..|+.+-+..+++
T Consensus 102 A~~~g~~~~v~~Ll~ 116 (285)
T 3kea_A 102 AVDSGNMQTVKLFVK 116 (285)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 445566554444433
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=70.07 E-value=45 Score=36.05 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=55.7
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCC--CC--HhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 011378 102 TYNTLLVESCRKENMSEAEEIFCEMSRRGVA--PD--IVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIII 177 (487)
Q Consensus 102 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 177 (487)
-|.-++..+-+.+.++.+.++-....+..-. ++ ...|+.+.+.+..-|++++|...+-.+...... ......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence 3566777777778777777665544432211 11 124677778888888888888887777665433 34566777
Q ss_pred HHHHhcCCHHHHH
Q 011378 178 NGYCRNGFVLEAL 190 (487)
Q Consensus 178 ~~~~~~~~~~~a~ 190 (487)
..+|..|....-.
T Consensus 979 ~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 979 NQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHCCHHHHH
T ss_pred HHHHhCCChhhhh
Confidence 7777777665543
No 264
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=68.36 E-value=17 Score=30.52 Aligned_cols=18 Identities=6% Similarity=0.143 Sum_probs=9.3
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 011378 461 VSQNNLKEAFRFHDEMLQ 478 (487)
Q Consensus 461 ~~~~~~~~a~~~~~~m~~ 478 (487)
...|+.+.+.++.+++++
T Consensus 218 ~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQD 235 (237)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 344555555555555544
No 265
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=68.02 E-value=29 Score=28.05 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=31.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCcc---chHHHHHHHHh-cCChhhHHHHHHHHHHCCCCCC
Q 011378 35 TLINAYCREGFLEEAFQLMNSMSGKGLKPGVF---TYNSLINGLCK-KGRCDRAKEVLDEMLQMGLSPD 99 (487)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~~~ 99 (487)
+.+...+..|+.+.-.++.+.+.++|..++.. -++.|.-++.. ..+.....++.+.+.+.|..++
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 34555555565555555666666666655442 23333333322 1223334455555556665544
No 266
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=66.98 E-value=28 Score=29.55 Aligned_cols=57 Identities=12% Similarity=0.009 Sum_probs=29.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCc-------cchHHHHHHHHh--cCChhhHHHHHHHHH
Q 011378 36 LINAYCREGFLEEAFQLMNSMSGKGLKPGV-------FTYNSLINGLCK--KGRCDRAKEVLDEML 92 (487)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~--~~~~~~a~~~~~~m~ 92 (487)
.+...++.|+.+....+++.+.+.|..++. .-++.|..++.. .|+.+-+..+++.-.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCC
Confidence 344556667777666666666555554432 334444444322 256665555555433
No 267
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=66.55 E-value=70 Score=28.37 Aligned_cols=111 Identities=11% Similarity=0.092 Sum_probs=53.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCC---ccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH---HHHHHHHH
Q 011378 36 LINAYCREGFLEEAFQLMNSMSGKGLKPG---VFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTA---TYNTLLVE 109 (487)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~ 109 (487)
.+...++.|+.+....++.. .+..++ ..-.+. +...++.|+.+- ++.+.+.|..++.. -++ .|..
T Consensus 27 ~L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~-L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~ 97 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLTP---LNVNCHASDGRKSTP-LHLAAGYNRVRI----VQLLLQHGADVHAKDKGGLV-PLHN 97 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCH-HHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCC-HHHH
T ss_pred hHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCH-HHHHHHcCCHHH----HHHHHHcCCCCCccCCCCCc-HHHH
Confidence 44445677888777766643 233222 222333 334445666543 34444455544322 222 3344
Q ss_pred HHccCChhHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHhCCCHHHHHHHHH
Q 011378 110 SCRKENMSEAEEIFCEMSRRGVAPDIVS--FSTLIGIFSRNGQLDRALMYFR 159 (487)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~ 159 (487)
.+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+.+..+++
T Consensus 98 A~~~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 145 (351)
T 3utm_A 98 ACSYGHYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145 (351)
T ss_dssp HHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHCCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 45556654 4444445565554321 1134445556677665544443
No 268
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=65.90 E-value=40 Score=25.32 Aligned_cols=81 Identities=14% Similarity=0.084 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhH---HHHHHHHHHHCCCCC-CHhHHH-HHHHHHHhCCCHHHHH
Q 011378 81 CDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSE---AEEIFCEMSRRGVAP-DIVSFS-TLIGIFSRNGQLDRAL 155 (487)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~m~~~g~~p-~~~~~~-~li~~~~~~g~~~~a~ 155 (487)
...+.+-+.+....|. ++..+--.+-.++++..+... +..+++++.+.+ .| ...-|. .+--++.|.|+++.|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444554444333 555555556666666666555 677777766543 12 222222 3445677888888888
Q ss_pred HHHHHHHH
Q 011378 156 MYFREMKS 163 (487)
Q Consensus 156 ~~~~~m~~ 163 (487)
+.++.+.+
T Consensus 95 ~~~~~lL~ 102 (126)
T 1nzn_A 95 KYVRGLLQ 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887766
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.94 E-value=56 Score=30.66 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=56.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCe----ee
Q 011378 207 TYNTILNGLCRAKMLTEADDLFNEMLERGVF--PDFYTFTTLIHGHCKDGNMNKALNLFDIMTQ---KSIKPDI----VT 277 (487)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~----~~ 277 (487)
++..+...|.+.|+++.|.+++.++...... .-...+-.+|..+...+++..+...++.... .+-.|+. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556666677777777777777776654222 2234566667777777777777776665543 1211211 11
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011378 278 YNTLIDGFCKVGEMEKANKLWADMISRK 305 (487)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~~~ 305 (487)
|..++ +...+++..|.+.|.+.....
T Consensus 213 ~~gl~--~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIH--CLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHG--GGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHH--HHHhChHHHHHHHHHHHhccC
Confidence 22222 344677888888887765543
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=63.23 E-value=86 Score=28.21 Aligned_cols=165 Identities=13% Similarity=0.061 Sum_probs=89.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCChhhHHHHHHH
Q 011378 279 NTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRL----WYEMVGKGIKPTLVSCNTIIKG 354 (487)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~li~~ 354 (487)
.++..-|.+.+++++|.+++.+- ...+.+.|+...|-++ .+...+.++++|......|+..
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34555567777777777766432 1223344554444333 3445566777777777777766
Q ss_pred HHhcCChH-HHHHHHHHHH----HCC--CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 011378 355 YCRSGDAS-KADEFLSKMV----SEG--VDPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCR 427 (487)
Q Consensus 355 ~~~~~~~~-~a~~~~~~m~----~~g--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 427 (487)
+......+ .-..+++.++ +.| -.-|+.....+-..|.+.+++.+|+.-|- .|-.++...|..++..+.+
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHH
Confidence 66554311 1233333332 223 22355566667788888888888877652 2323344566555555544
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 428 QGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 428 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
.+...++-..+-+ .+-.|+..++...|..+++...
T Consensus 180 ~~~~~e~dlfiaR---------------aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 180 QDESHTAPLYCAR---------------AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp TSCGGGHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCccHHHHHHH---------------HHHHHHHhCCHHHHHHHHHHHH
Confidence 4443433322222 2334555677777777665554
No 271
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=63.18 E-value=56 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=13.8
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCC
Q 011378 107 LVESCRKENMSEAEEIFCEMSRRGVAPD 134 (487)
Q Consensus 107 l~~~~~~~~~~~a~~~~~~m~~~g~~p~ 134 (487)
|...+..++.+.-.++.+.+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3334444544444455555555555544
No 272
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=62.69 E-value=26 Score=29.23 Aligned_cols=208 Identities=13% Similarity=0.073 Sum_probs=95.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCeee--hHHHHHHHH
Q 011378 211 ILNGLCRAKMLTEADDLFNEMLERGVFPDFYT--FTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDIVT--YNTLIDGFC 286 (487)
Q Consensus 211 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~ 286 (487)
.+...++.|+.+.+ +.+.+.|..++... -.+.+...+..|+.+.+ +.+.+.|..++... -.+.+...+
T Consensus 14 ~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 14 PLHAAAEAGHVDIC----HMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV----KYLIKAGALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp HHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHTTTCCCCCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCcHHHH----HHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHHH
Confidence 34445666776543 44445565544321 12344455566665543 34445565554322 123344445
Q ss_pred ccCCHHHHHHHHHHHHhCC-CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCC
Q 011378 287 KVGEMEKANKLWADMISRK-ISPN---YISYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVS--CNTIIKGYCRSGD 360 (487)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~~-~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~ 360 (487)
..|+.+-+..++ +.+ ..++ ..-.+.|. ..+..|+.+ +++.+.+.|..++... -.+.+...+..|+
T Consensus 86 ~~~~~~~~~~Ll----~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 156 (237)
T 3b7b_A 86 KKGHYEVVQYLL----SNGQMDVNCQDDGGWTPMI-WATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGC 156 (237)
T ss_dssp HTTCHHHHHHHH----TTTCCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred HcCCHHHHHHHH----hCCCCCcccCCCCCCCHHH-HHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCC
Confidence 566655544443 333 2222 22222333 333445554 3444445555544321 1122333344555
Q ss_pred hHHHHHHHHHHHHCCCCCChhh--HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhh--HHHHHHHHHhcCChHHHHH
Q 011378 361 ASKADEFLSKMVSEGVDPDSIS--YNTLINGFVREENMDKAFALVSKMENQGLVPDVIT--YNVILTGFCRQGRMHDSEL 436 (487)
Q Consensus 361 ~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~ 436 (487)
.+ +++.+.+.|..++... -.+.+...++.++.+-+.. +.+.|..++... -.+.+......|+.+.+.+
T Consensus 157 ~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~ 228 (237)
T 3b7b_A 157 VD----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVL----FLSRDSDVTLKNKEGETPLQCASLNSQVWSALQ 228 (237)
T ss_dssp HH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH----HHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHH
T ss_pred HH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHH----HHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Confidence 43 4445555666554321 1233444455666554333 334455444321 2234445556667777766
Q ss_pred HHHHHHH
Q 011378 437 ILWRMIE 443 (487)
Q Consensus 437 ~~~~m~~ 443 (487)
+.+.+.+
T Consensus 229 l~~~l~d 235 (237)
T 3b7b_A 229 MSKALQD 235 (237)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 6666654
No 273
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=62.01 E-value=31 Score=27.82 Aligned_cols=15 Identities=13% Similarity=0.481 Sum_probs=6.9
Q ss_pred HHHHHHHHHCCCCCC
Q 011378 365 DEFLSKMVSEGVDPD 379 (487)
Q Consensus 365 ~~~~~~m~~~g~~p~ 379 (487)
.++++.+.+.|..|+
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 344444444554443
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.71 E-value=67 Score=30.14 Aligned_cols=96 Identities=18% Similarity=0.032 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHHH
Q 011378 311 ISYGILINGYCSMGHVTEAFRLWYEMVGKGIKP--TLVSCNTIIKGYCRSGDASKADEFLSKMVSE-GVDPDSISYNTLI 387 (487)
Q Consensus 311 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li 387 (487)
.+...+...|.+.|+++.|.+.+.++......+ -+..+-.+++.+...+++..+...+++.... .-.+|...-+.+-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 355677788888888888888888877543222 3345667777788888888888877776432 1112322222221
Q ss_pred ----HHHhccCCHHHHHHHHHHH
Q 011378 388 ----NGFVREENMDKAFALVSKM 406 (487)
Q Consensus 388 ----~~~~~~~~~~~a~~~~~~m 406 (487)
-.+...+++..|...|-..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHH
Confidence 2223456666666665443
No 275
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=60.30 E-value=48 Score=27.41 Aligned_cols=17 Identities=12% Similarity=0.137 Sum_probs=8.8
Q ss_pred HHHHHhcCChhHHHHHH
Q 011378 37 INAYCREGFLEEAFQLM 53 (487)
Q Consensus 37 l~~~~~~~~~~~a~~~~ 53 (487)
+...++.|+.+....++
T Consensus 7 L~~A~~~g~~~~v~~Ll 23 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLL 23 (232)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 44445566655544444
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=60.03 E-value=77 Score=28.85 Aligned_cols=25 Identities=12% Similarity=0.325 Sum_probs=16.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHH
Q 011378 103 YNTLLVESCRKENMSEAEEIFCEMS 127 (487)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~m~ 127 (487)
...+|.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 3456666666677777776666654
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=57.65 E-value=67 Score=26.39 Aligned_cols=53 Identities=19% Similarity=0.095 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 011378 326 VTEAFRLWYEMVGKGIKPTLV-SCNTIIKGYCRSGDASKADEFLSKMVSEGVDP 378 (487)
Q Consensus 326 ~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 378 (487)
..++..+|..|..+|+..... .|...-..+...|++.+|.++++.=++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334444555444444443322 34444444444455555555544444444444
No 278
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=57.62 E-value=48 Score=26.29 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=31.5
Q ss_pred CCCCChhhHHHH--HHHHHhcCCHHHHHHHHHHHHHc-CCcCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 165 GLVPDNVLYTII--INGYCRNGFVLEALKMRDEMLEK-GCVMDV-------VTYNTILNGLCRAKMLTEADDLFNEML 232 (487)
Q Consensus 165 g~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~m~~~-g~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~ 232 (487)
|+.|....|+.+ ++.+...+.++.|.-+.+.+... +..++. .+...+-+++...+++..|...|++..
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 444443333322 44455555555555444433321 112221 134455567777788888888887754
No 279
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=56.87 E-value=1.1e+02 Score=27.21 Aligned_cols=275 Identities=14% Similarity=0.118 Sum_probs=124.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcc----chHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHH--HHHH
Q 011378 33 YNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVF----TYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTAT--YNTL 106 (487)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~l 106 (487)
-++.+...++.|+++.+..+++ +|..||.. -++.|.-+ ++.|..+ +.+.+.+.|-.|+... ....
T Consensus 25 ~~t~L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A-~~~g~~~----iv~~Ll~~ga~~~~~~~~~~~~ 95 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNA-VQMSRED----IVELLLRHGADPVLRKKNGATP 95 (337)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHH-HHTTCHH----HHHHHHHTTCCTTCCCTTCCCH
T ss_pred CChHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHHHHH-HHcCCHH----HHHHHHHcCCchhhhccCCCch
Confidence 3556666678888877665554 46555532 24454444 4566654 4444555665443211 1111
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChh------------
Q 011378 107 LVESCRKENMSEAEEIFCEMSRRGVAPDI---VSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNV------------ 171 (487)
Q Consensus 107 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~------------ 171 (487)
+......+..... ..+...+..++. .-+ +.+...+..|..+.+..+++ .|..++..
T Consensus 96 ~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~g~-t~l~~A~~~~~~~~~~~ll~----~ga~~~~~~~~~~~~~~~~~ 166 (337)
T 4g8k_A 96 FILAAIAGSVKLL----KLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALKFLYK----RGANVNLRRKTKEDQERLRK 166 (337)
T ss_dssp HHHHHHHTCHHHH----HHHHTTTCCTTCBCTTCC-BHHHHHHHTTCHHHHHHHHH----TTCCTTCCCCCC-----CTT
T ss_pred hHHHHhcccchhh----HHhhhccchhhhhccCCC-CHHHHHHHcCcHHHHHHHHH----cCCCcchhhccccccccccC
Confidence 1222222222222 222233332221 111 23344456677665544443 33322210
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHH
Q 011378 172 -LYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVV---TYNTILNGLCRAKMLTEADDLFNEMLERGVFPDFY--TFTT 245 (487)
Q Consensus 172 -~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--t~~~ 245 (487)
-.+. |..-++.|+.+-+..+++ +.|..++.. ..+.+..+... +.......+.+.+.+.|..++.. .-.+
T Consensus 167 ~g~T~-L~~A~~~g~~~~v~~LL~---~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t 241 (337)
T 4g8k_A 167 GGATA-LMDAAEKGHVEVLKILLD---EMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKT 241 (337)
T ss_dssp CSCCH-HHHHHHHTCHHHHHHHHH---HSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCC
T ss_pred CCCcH-HHHHHHCCCHHHHHHHHh---ccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCC
Confidence 1122 333355666644333322 345544332 22333333222 22223334444456666655432 1223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCee---ehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011378 246 LIHGHCKDGNMNKALNLFDIMTQKSIKPDIV---TYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCS 322 (487)
Q Consensus 246 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 322 (487)
.+...+..|..+....+++ ..|..++.. -.+.|.- -++.|+.+-+. .+.+.|..++..+ . +..-++
T Consensus 242 ~L~~a~~~~~~~~v~~Ll~---~~~~~vn~~d~~G~TpL~~-A~~~g~~~iv~----~Ll~~GAd~n~~~--~-L~~A~~ 310 (337)
T 4g8k_A 242 PLILAVEKKHLGLVQRLLE---QEHIEINDTDSDGKTALLL-AVELKLKKIAE----LLCKRGASTDCGD--L-VMTARR 310 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHT---STTCCTTCBCTTSCBHHHH-HHHTTCHHHHH----HHHTTSCSSTTCC--H-HHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHH---hcCCcccCcCCCCCCHHHH-HHHcCCHHHHH----HHHHCCCCCCCCC--H-HHHHHH
Confidence 4455667777776554432 234444332 2334443 35567765443 3345677777665 3 333445
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCh
Q 011378 323 MGHVTEAFRLWYEMVGKGIKPTL 345 (487)
Q Consensus 323 ~~~~~~a~~~~~~m~~~~~~~~~ 345 (487)
.|+.+ +.+.+.+.|-.||.
T Consensus 311 ~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 311 NYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp TTCHH----HHHHHHHTTCCC--
T ss_pred cCCHH----HHHHHHHCcCCCCC
Confidence 66654 45556677776664
No 280
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=55.86 E-value=70 Score=26.13 Aligned_cols=46 Identities=11% Similarity=0.045 Sum_probs=21.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCcc---chHHHHHHHHhcCChhhHH
Q 011378 35 TLINAYCREGFLEEAFQLMNSMSGKGLKPGVF---TYNSLINGLCKKGRCDRAK 85 (487)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~ 85 (487)
+.+...++.|+.+.+..++ +.|..++.. .++.+ ...++.|+.+-+.
T Consensus 27 t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~ 75 (223)
T 2f8y_A 27 TALHLAARYSRSDAAKRLL----EASADANIQDNMGRTPL-HAAVSADAQGVFQ 75 (223)
T ss_dssp CHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHH-HHHHHTTCHHHHH
T ss_pred chHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHH-HHHHHcCCHHHHH
Confidence 4455556777765544443 345444432 22333 3334455544333
No 281
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=55.63 E-value=53 Score=23.44 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=6.3
Q ss_pred HhcCChhhHHHHHH
Q 011378 76 CKKGRCDRAKEVLD 89 (487)
Q Consensus 76 ~~~~~~~~a~~~~~ 89 (487)
...|+|.+|..+.+
T Consensus 50 mNrG~Yq~Al~l~~ 63 (115)
T 2uwj_G 50 ANQGRYQEALAFAH 63 (115)
T ss_dssp HHTTCHHHHHGGGT
T ss_pred HcchhHHHHHHhcC
Confidence 34444444444433
No 282
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=55.58 E-value=68 Score=28.93 Aligned_cols=209 Identities=14% Similarity=0.066 Sum_probs=103.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcc---chHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011378 34 NTLINAYCREGFLEEAFQLMNSMSGKGLKPGVF---TYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVES 110 (487)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 110 (487)
.+.+...+..|+.+.+..++ +.|..++.. -++.| ...++.|+.+-+.- +.+.|..++...-.+.|...
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L-~~A~~~g~~~~v~~----Ll~~g~~~~~~~g~t~L~~A 91 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTAL-HLACKFGCVDTAKY----LASVGEVHSLWHGQKPIHLA 91 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHH-HHHHHHCCHHHHHH----HHHHCCCCCCBTTBCHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHH-HHHHHcCCHHHHHH----HHHCCCCccccCCCCHHHHH
Confidence 34455556778876665555 345544432 23444 44455666554443 34444444432223345556
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCH--------------------hHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCC
Q 011378 111 CRKENMSEAEEIFCEMSRRGVAPDI--------------------VSFSTLIGIFSRNG--QLDRALMYFREMKSAGLVP 168 (487)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~g~~p~~--------------------~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~ 168 (487)
+..|+.+-+..+++.-...|..|+. .-. +.+...+..| +.+-+..+++. |..+
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~~~v~~Ll~~----ga~~ 166 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQ-TALHWCVGLGPEYLEMIKILVQL----GASP 166 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCC-CHHHHHHHSCGGGHHHHHHHHHH----TCCT
T ss_pred HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCC-CHHHHHHHcCCchHHHHHHHHHc----CCCC
Confidence 6778888777777765555555443 112 3445555666 56555544443 5444
Q ss_pred Chhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCc-----CCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011378 169 DNVL--YTIIINGYCRNGFVLEALKMRDEMLEKGCV-----MDV---VTYNTILNGLCRAKMLTEADDLFNEMLERGVFP 238 (487)
Q Consensus 169 ~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-----~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 238 (487)
+... -.+.|...+..|+.+-+. .+.+.|.. ++. .-++.| ...+..|+.+-+.- +.+.|..+
T Consensus 167 ~~~d~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~----Ll~~gad~ 237 (364)
T 3ljn_A 167 TAKDKADETPLMRAMEFRNREALD----LMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDVAMR----FVEMGIDV 237 (364)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHH----HHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHHHHH----HHTTTCCT
T ss_pred cccCCCCCCHHHHHHHcCCHHHHH----HHHhcccccccccccccCCCCCcHH-HHHHHcCCHHHHHH----HHHcCCCC
Confidence 3321 122333445666655443 33333332 222 222333 33456677654443 44456544
Q ss_pred CHHH--HHHHHHHHHhcCCHHHHHHHHHH
Q 011378 239 DFYT--FTTLIHGHCKDGNMNKALNLFDI 265 (487)
Q Consensus 239 ~~~t--~~~li~~~~~~g~~~~a~~~~~~ 265 (487)
+... -.+-+...+..|+.+-+.-+++.
T Consensus 238 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 238 NMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 3221 12334455666787777666653
No 283
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=55.55 E-value=44 Score=22.50 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=34.8
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011378 405 KMENQGLVPDVITYNVILTGFCRQG-RMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNN 465 (487)
Q Consensus 405 ~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~ 465 (487)
.|++.|++++..- ..++..+...+ ..-.+..+.+.+.+.+...+..|.-..++.+.+.|.
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4556666665544 33444554443 445566677776666555666666666666666553
No 284
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=54.78 E-value=56 Score=23.39 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=19.6
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 011378 75 LCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMS 127 (487)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 127 (487)
+...|+|.+|..+.+.+. .||...|-+|- -.+.|-.+.+..-+..+-
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHHHT
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHH
Confidence 344555555554444332 34444443332 123344444444443443
No 285
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=54.66 E-value=32 Score=29.58 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=36.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCC-------CccchHHHHHHHH--hcCChhhHHHHHHHH
Q 011378 35 TLINAYCREGFLEEAFQLMNSMSGKGLKP-------GVFTYNSLINGLC--KKGRCDRAKEVLDEM 91 (487)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-------~~~~~~~li~~~~--~~~~~~~a~~~~~~m 91 (487)
+.+...++.|+.+.+..+++.....+... +..-++.|..++. +.|+.+-+..+++.-
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 44555568888888888888776655433 3345566666654 347776666666653
No 286
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=53.87 E-value=1.2e+02 Score=27.15 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH----HHHHHHHcCCcCChhhHHHHH
Q 011378 137 SFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALK----MRDEMLEKGCVMDVVTYNTIL 212 (487)
Q Consensus 137 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~----~~~~m~~~g~~~~~~~~~~li 212 (487)
+|.++..-|.+.+++++|++++-.--. .+.+.|....+.+ +++.+.+.++++|......|+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345566666777777777765443211 1223333333322 234444555666655555555
Q ss_pred HHHHhcCCHH-HHHHHHHH----HHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011378 213 NGLCRAKMLT-EADDLFNE----MLERGV--FPDFYTFTTLIHGHCKDGNMNKALNLF 263 (487)
Q Consensus 213 ~~~~~~~~~~-~a~~~~~~----m~~~~~--~~~~~t~~~li~~~~~~g~~~~a~~~~ 263 (487)
..+.....-+ .-.++.++ -.+.|- .=|+.....+-..|.+.+++.+|...|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5554433211 11122222 222232 225555666667788888888887666
No 287
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=53.67 E-value=65 Score=23.83 Aligned_cols=41 Identities=10% Similarity=-0.027 Sum_probs=20.7
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011378 403 VSKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIE 443 (487)
Q Consensus 403 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 443 (487)
|+++.+..+.|++..--.-|..+...+++..|..+..++..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444545554444333333344555566666666555543
No 288
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.23 E-value=77 Score=26.01 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 011378 359 GDASKADEFLSKMVSEGVDPDSI-SYNTLINGFVREENMDKAFALVSKMENQGLVPD 414 (487)
Q Consensus 359 ~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 414 (487)
++.....++|..|..+||..... .|...-..+-..|++.+|.+++..-.+.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 33555566666666555554432 344445555555666666666665555555553
No 289
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=52.72 E-value=32 Score=26.66 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=10.4
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 011378 36 LINAYCREGFLEEAFQLMN 54 (487)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~ 54 (487)
.+...++.|+.+....+++
T Consensus 11 ~l~~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCC
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 3444456666666655543
No 290
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=52.21 E-value=62 Score=23.13 Aligned_cols=50 Identities=10% Similarity=0.013 Sum_probs=21.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011378 179 GYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLER 234 (487)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (487)
.+...|++++|..+.+.+ +-||...|-+|-. .+.|..+.++.-+..+..+
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 344455555554433221 2344444444332 3444444444444444433
No 291
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=51.84 E-value=45 Score=28.96 Aligned_cols=24 Identities=4% Similarity=-0.270 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHH
Q 011378 32 TYNTLINAYCREGFLEEAFQLMNS 55 (487)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~ 55 (487)
...+.+...+..|+.++..++...
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~~~~ 37 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGSKPA 37 (285)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHhhcCCCCCcccCCCC
Confidence 345667777778887777665443
No 292
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=51.28 E-value=64 Score=23.07 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=20.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011378 179 GYCRNGFVLEALKMRDEMLEKGCVMDVVTYNTILNGLCRAKMLTEADDLFNEMLE 233 (487)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (487)
.+...|++++|..+.+.+ +-||...|-+|-. .+.|..+.++.-+..+..
T Consensus 49 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 344455555554443322 2344444444332 234444444444444433
No 293
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=50.64 E-value=61 Score=24.91 Aligned_cols=61 Identities=7% Similarity=-0.024 Sum_probs=33.9
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 011378 124 CEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGF 185 (487)
Q Consensus 124 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 185 (487)
+.+++.|++++.. -..++..+...+..-.|.++++.+++.+...+..|--.-|+.+...|-
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3455666666653 234555555555555666777777666555555554444455544443
No 294
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=50.35 E-value=44 Score=25.83 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=49.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH--HHHHHHHhcc
Q 011378 319 GYCSMGHVTEAFRLWYEMVGKGIKPTL---VSCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISY--NTLINGFVRE 393 (487)
Q Consensus 319 ~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~ 393 (487)
..++.|+.+....+++. .+..++. .-++.|. ..+..|+.+ +++.+.+.|..++.... .+.+...+..
T Consensus 14 ~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 14 EAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLH-FAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHc---CCCCccccccCCCCHHH-HHHHcChHH----HHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence 33455666655554432 2222222 1123333 344556644 34444455655543221 1223334455
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011378 394 ENMDKAFALVSKMENQGLVPDVITY--NVILTGFCRQGRMHDSELILWRMIEKGLNPDR 450 (487)
Q Consensus 394 ~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 450 (487)
|+.+-+..++ +.|..++.... .+.+...++.|..+-+ +.+.+.|..|+.
T Consensus 86 ~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~ga~~~~ 136 (165)
T 3twr_A 86 GHYEVAELLV----KHGAVVNVADLWKFTPLHEAAAKGKYEIC----KLLLQHGADPTK 136 (165)
T ss_dssp TCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTC
T ss_pred CcHHHHHHHH----hCCCCCCCcCCCCCCHHHHHHHcCCHHHH----HHHHHcCCCCcc
Confidence 6655433333 34544433221 1233444455555444 333445665543
No 295
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=48.60 E-value=68 Score=22.67 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=13.5
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhC
Q 011378 119 AEEIFCEMSRRGVAPDIVSFSTLIGIFSRN 148 (487)
Q Consensus 119 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 148 (487)
+.++.+++...|+.|+..+..-++..|..-
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y 57 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQY 57 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 344444444444444444444444444433
No 296
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=48.53 E-value=66 Score=24.69 Aligned_cols=59 Identities=12% Similarity=-0.032 Sum_probs=30.9
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011378 405 KMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQN 464 (487)
Q Consensus 405 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~ 464 (487)
.+++.|++++..=. .++..+...+..-.|..+++.+.+.+...+..|.-.-++.+.+.|
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34555655554332 233333344445556666666665555555666555555555554
No 297
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=48.35 E-value=63 Score=25.01 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=32.0
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011378 404 SKMENQGLVPDVITYNVILTGFCRQGRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNN 465 (487)
Q Consensus 404 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~ 465 (487)
+.+++.|++++..= ..++..+...+..-.|..+++.+.+.+...+..|.-.-++.+.+.|-
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34455665554332 23334444444556666666666666555566666666665555553
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.58 E-value=92 Score=24.22 Aligned_cols=65 Identities=15% Similarity=0.303 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC--HHHHHHHHHHHHhCCCC
Q 011378 347 SCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREEN--MDKAFALVSKMENQGLV 412 (487)
Q Consensus 347 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~ 412 (487)
..+.+|+-|...|+.++|.+.++++...... ...+...+..+.-+.++ .+.+..++..+...|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4678899999999999999999988631111 12334444445544322 45666777777666544
No 299
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=46.87 E-value=2.3e+02 Score=28.25 Aligned_cols=25 Identities=8% Similarity=0.218 Sum_probs=16.1
Q ss_pred ehHHHHHHHHc---cCCHHHHHHHHHHH
Q 011378 277 TYNTLIDGFCK---VGEMEKANKLWADM 301 (487)
Q Consensus 277 ~~~~li~~~~~---~g~~~~a~~~~~~m 301 (487)
-+..||..|.+ ..++.+|.+.|--+
T Consensus 355 N~arLI~~Yt~~F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 355 RFANILANYTKSFRYSDPRVAVEYLVLI 382 (661)
T ss_dssp CHHHHHHHHHTTTTTTCHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 36677777755 45677777766554
No 300
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=46.79 E-value=60 Score=24.57 Aligned_cols=61 Identities=11% Similarity=0.175 Sum_probs=34.2
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 011378 125 EMSRRGVAPDIVSFSTLIGIFSRNG-QLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFV 186 (487)
Q Consensus 125 ~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 186 (487)
.+++.|++++.. -..++..+...+ ..-.|.++++.+++.+...+..|--.-|+.+.+.|-+
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 355666666653 234555555554 5566777777777666555555544445555554433
No 301
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=46.73 E-value=1.1e+02 Score=24.29 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=16.7
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 011378 456 LINGHVSQNNLKEAFRFHD 474 (487)
Q Consensus 456 l~~~~~~~~~~~~a~~~~~ 474 (487)
+-.+|...+++++|+.+++
T Consensus 128 ia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHh
Confidence 5678889999999999987
No 302
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=46.23 E-value=49 Score=27.23 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=10.2
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 011378 37 INAYCREGFLEEAFQLMNS 55 (487)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~ 55 (487)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHS 24 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhc
Confidence 4444556666555555543
No 303
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=45.72 E-value=1.6e+02 Score=25.99 Aligned_cols=19 Identities=16% Similarity=0.506 Sum_probs=8.9
Q ss_pred HHHHHHHccCChhHHHHHH
Q 011378 105 TLLVESCRKENMSEAEEIF 123 (487)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~ 123 (487)
+.|...++.|+++-+..++
T Consensus 27 t~L~~Av~~g~~~~V~~LL 45 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLL 45 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH
Confidence 3444445555555444333
No 304
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=45.43 E-value=69 Score=24.21 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=26.8
Q ss_pred HHHCCCCCChhhHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 011378 371 MVSEGVDPDSISYNTLINGFVREE-NMDKAFALVSKMENQGLVPDVITYNVILTGFCRQG 429 (487)
Q Consensus 371 m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 429 (487)
+.+.|+.++.. -..++..+...+ ..-.|.++++.+++.+-..+..|.-.-+..+...|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 44556555443 222333343333 44556666666665544444444333334444444
No 305
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=44.96 E-value=1.7e+02 Score=25.97 Aligned_cols=68 Identities=10% Similarity=0.141 Sum_probs=45.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHH
Q 011378 383 YNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQGR--MHDSELILWRMIEKGLNPDRS 451 (487)
Q Consensus 383 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ 451 (487)
.+.++.-|...++.++|.+.++++....+. ....+..+..++-+.+. .+....++.++...|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 567888899999999999999988632111 12345556666665433 355667888888777765544
No 306
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.19 E-value=62 Score=25.05 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=34.0
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 011378 124 CEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGF 185 (487)
Q Consensus 124 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 185 (487)
+.+++.|++++.. -..++..+...+..-.|.++++.+++.+...+..|--.-|+.+...|-
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3456667666553 334556666666666677777777766555555554444455555443
No 307
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=43.99 E-value=1.3e+02 Score=24.58 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=27.7
Q ss_pred hHHhcCChhhHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCChhHHHHHHHH
Q 011378 4 ALCKDHKIDSAKMFLCEMEQKGVYPDTV--TYNTLINAYCREGFLEEAFQLMNS 55 (487)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~ 55 (487)
.-++.|+.+.+..+++. .|..++.. .-.+.+...++.|+.+-+..+++.
T Consensus 9 ~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 9 LAAKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 34566776666665543 24433322 123456666678888777766654
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.61 E-value=1e+02 Score=23.13 Aligned_cols=65 Identities=15% Similarity=0.296 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC--CHHHHHHHHHHHHhCCCC
Q 011378 347 SCNTIIKGYCRSGDASKADEFLSKMVSEGVDPDSISYNTLINGFVREE--NMDKAFALVSKMENQGLV 412 (487)
Q Consensus 347 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~ 412 (487)
..+.+++-|...|+.++|.+.++++...... ...+...+..+.-+.+ ..+.+..++..+...|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4567888888888999998888887631111 1223444444444433 245566777777665544
No 309
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=42.96 E-value=1.4e+02 Score=26.69 Aligned_cols=48 Identities=15% Similarity=-0.004 Sum_probs=24.4
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHhh--HHHHHHHHHhcCChHHHHHHHHH
Q 011378 389 GFVREENMDKAFALVSKMENQGLVPDVIT--YNVILTGFCRQGRMHDSELILWR 440 (487)
Q Consensus 389 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~ 440 (487)
..+..|+.+-+..+ .+.|..++... -.+-+...++.|..+-+..+++.
T Consensus 217 ~A~~~g~~~~v~~L----l~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 217 WAILINWEDVAMRF----VEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTTTCHHHHHHH----HTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 34456666544333 34455554322 12233444566777777666655
No 310
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=41.92 E-value=59 Score=25.00 Aligned_cols=34 Identities=12% Similarity=-0.070 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011378 431 MHDSELILWRMIEKGLNPDRSTYTTLINGHVSQN 464 (487)
Q Consensus 431 ~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~ 464 (487)
.-.|..+++.+.+.+...+..|.-.-++.+.+.|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3455555555555544445555555455444444
No 311
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=41.67 E-value=76 Score=24.51 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011378 431 MHDSELILWRMIEKGLNPDRSTYTTLINGHVSQN 464 (487)
Q Consensus 431 ~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~ 464 (487)
.-.|..+++.+.+.+...+..|.-.-++.+.+.|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444444444444444444444433
No 312
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=40.89 E-value=59 Score=25.00 Aligned_cols=60 Identities=7% Similarity=-0.047 Sum_probs=33.5
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 011378 124 CEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGF 185 (487)
Q Consensus 124 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 185 (487)
+.+++.|++++.. -..++..+...+ .-.|.++++.+++.+...+..|--.-|+.+...|-
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3455667776654 234455555555 55677777777766655555554444454544443
No 313
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=40.66 E-value=1.9e+02 Score=25.40 Aligned_cols=243 Identities=13% Similarity=0.113 Sum_probs=116.4
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcc---chHHHHHHHHhcC
Q 011378 5 LCKDHKIDSAKMFLCEMEQKGVYPDT--VTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVF---TYNSLINGLCKKG 79 (487)
Q Consensus 5 ~~~~~~~~~a~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~ 79 (487)
-++.|+.+....++.. .|..++. ..-.+.+...++.|+.+-+..++ +.|..++.. .++.|.. .++.|
T Consensus 31 A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~-A~~~g 102 (351)
T 3utm_A 31 AARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL----QHGADVHAKDKGGLVPLHN-ACSYG 102 (351)
T ss_dssp HHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCHHHH-HHHTT
T ss_pred HHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCccCCCCCcHHHH-HHHCC
Confidence 4667777777777653 2332222 12234566667888876555444 456555433 3344444 45566
Q ss_pred ChhhHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhH-------------------
Q 011378 80 RCDRAKEVLDEMLQMGLSPDTA---TYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVS------------------- 137 (487)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~------------------- 137 (487)
+.+ +++.+.+.|..++.. -++ .+...+..|+.+-+ +.+.+.|..|+...
T Consensus 103 ~~~----iv~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~ 173 (351)
T 3utm_A 103 HYE----VTELLLKHGACVNAMDLWQFT-PLHEAASKNRVEVC----SLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173 (351)
T ss_dssp CHH----HHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHH
T ss_pred CHH----HHHHHHHCCCCCCCCCCCCCC-HHHHHHHcCCHHHH----HHHHHcCCCCccccCCCCcchHHHhhhhhHHHH
Confidence 654 445555566555432 222 34444566766544 44445566554211
Q ss_pred ----HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcCChhhH--HHH
Q 011378 138 ----FSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLEALKMRDEMLEKGCVMDVVTY--NTI 211 (487)
Q Consensus 138 ----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~--~~l 211 (487)
...-+...+..++.+....++..-. .....+..-.+. +...+..+.. ...++.+.+.+.|..++.... .+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~t~-L~~A~~~~~~-~~~~~~~~Ll~~g~~~~~~~~~g~t~ 250 (351)
T 3utm_A 174 TYEFKGHSLLQAAREADLAKVKKTLALEI-INFKQPQSHETA-LHCAVASLHP-KRKQVAELLLRKGANVNEKNKDFMTP 250 (351)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTTTCC-TTCCCTTTCCCH-HHHHHHCCST-THHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred HhhhcccHHHHHHHhccHHHHHHHHHhhc-ccccCCCCCCCH-HHHHHHHhCc-cHHHHHHHHHHcCCCcCCcCCCCCCH
Confidence 0111223344555555444433211 111111112222 2333333321 223556666777776654322 233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCe
Q 011378 212 LNGLCRAKMLTEADDLFNEMLERGVFPDFYT--FTTLIHGHCKDGNMNKALNLFDIMTQKSIKPDI 275 (487)
Q Consensus 212 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~t--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 275 (487)
+...++.|+.+-+. .+.+.|..++... -.+.++..+..|+.+- .+.+.+.|..|+.
T Consensus 251 L~~A~~~g~~~~v~----~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~----v~~Ll~~gad~~~ 308 (351)
T 3utm_A 251 LHVAAERAHNDVME----VLHKHGAKMNALDSLGQTALHRAALAGHLQT----CRLLLSYGSDPSI 308 (351)
T ss_dssp HHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH----HHHHHHTTCCTTC
T ss_pred HHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCCHHHHHHHcCcHHH----HHHHHHcCCCCCC
Confidence 44556777775444 4445665544221 1223444456677654 4455567776654
No 314
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=40.57 E-value=18 Score=23.00 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=17.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCCCC
Q 011378 463 QNNLKEAFRFHDEMLQRGFVPDDAF 487 (487)
Q Consensus 463 ~~~~~~a~~~~~~m~~~g~~p~~~~ 487 (487)
.=+++.|...|.++...|=-|.++|
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 3458888888888877666665554
No 315
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.10 E-value=1.2e+02 Score=25.65 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=8.8
Q ss_pred hHHhcCChhhHHHHHHHH
Q 011378 4 ALCKDHKIDSAKMFLCEM 21 (487)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~ 21 (487)
.+...+++++|..++++.
T Consensus 27 v~IA~r~feeAv~lle~~ 44 (235)
T 2d2s_A 27 IELARLRFESAVETLLDI 44 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 334445555555555443
No 316
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.93 E-value=74 Score=24.60 Aligned_cols=60 Identities=10% Similarity=0.156 Sum_probs=31.8
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 011378 125 EMSRRGVAPDIVSFSTLIGIFSRNG-QLDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGF 185 (487)
Q Consensus 125 ~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 185 (487)
.|++.|++++..- ..++..+...+ ..-.|.++++.+++.+...+..|--.-|+.+...|-
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3556666665532 23445554444 455566677776666555555544444444444443
No 317
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=38.62 E-value=1e+02 Score=24.04 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 011378 118 EAEEIFCEMSRRGVAPD-IVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPD 169 (487)
Q Consensus 118 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 169 (487)
+..++|..|...||.-. +.-|-.-...+-..|++.+|.++|+.-.+.+-.|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 36677777776666543 23455555566667777777777777666665554
No 318
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=38.05 E-value=52 Score=28.16 Aligned_cols=30 Identities=10% Similarity=0.295 Sum_probs=15.9
Q ss_pred cchHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 011378 66 FTYNSLINGLCKKGRCDRAKEVLDEMLQMGL 96 (487)
Q Consensus 66 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 96 (487)
.-.+.|..+ ++.|+.+.+..+++...+.+.
T Consensus 12 ~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~ 41 (273)
T 2pnn_A 12 YDRRSIFDA-VAQSNCQELESLLPFLQRSKK 41 (273)
T ss_dssp CCHHHHHHH-HHTTCSSTTTTHHHHHHHSCC
T ss_pred ccchHHHHH-HHcCCHHHHHHHHHHHhhccc
Confidence 334444333 445666666666666555543
No 319
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.16 E-value=1.5e+02 Score=23.10 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=5.9
Q ss_pred ccCCHHHHHHHHHHH
Q 011378 392 REENMDKAFALVSKM 406 (487)
Q Consensus 392 ~~~~~~~a~~~~~~m 406 (487)
..|++.+|.+++..-
T Consensus 113 ~~g~~~~A~~Vy~~G 127 (152)
T 4a1g_A 113 AQGELQHASAVLQRG 127 (152)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 334444444444333
No 320
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.09 E-value=1.9e+02 Score=24.40 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=18.2
Q ss_pred CHhHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 011378 134 DIVSFSTLIGIFSRNGQLDRALMYFREMK 162 (487)
Q Consensus 134 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 162 (487)
+.......+....+-|+.++|.++|-+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 34444556666677777777777666554
No 321
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=36.86 E-value=52 Score=25.04 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=11.2
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 011378 36 LINAYCREGFLEEAFQLMNS 55 (487)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~ 55 (487)
.+...++.|+.+.+..+++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHh
Confidence 34444556666666666554
No 322
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=36.64 E-value=57 Score=24.80 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=6.9
Q ss_pred HHhcCCHHHHHHHHH
Q 011378 250 HCKDGNMNKALNLFD 264 (487)
Q Consensus 250 ~~~~g~~~~a~~~~~ 264 (487)
.++.|+.+....+++
T Consensus 9 A~~~g~~~~v~~ll~ 23 (156)
T 1bd8_A 9 AAARGDVQEVRRLLH 23 (156)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 344455554444443
No 323
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=35.80 E-value=1.2e+02 Score=21.53 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=13.7
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 011378 364 ADEFLSKMVSEGVDPDSISYNTLINGFVREE 394 (487)
Q Consensus 364 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 394 (487)
+.++.++...-|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3344444444444444444444444444433
No 324
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=35.56 E-value=1e+02 Score=26.71 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=8.3
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 011378 351 IIKGYCRSGDASKADEFLSK 370 (487)
Q Consensus 351 li~~~~~~~~~~~a~~~~~~ 370 (487)
|++-+|-.|++++|..-++.
T Consensus 37 LfqLLcv~G~w~RA~~QL~~ 56 (273)
T 1zbp_A 37 FIELLCIDGDFERADEQLMQ 56 (273)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHH
Confidence 44444444444444443333
No 325
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.30 E-value=1.1e+02 Score=24.06 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 011378 82 DRAKEVLDEMLQMGL-SPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAP 133 (487)
Q Consensus 82 ~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p 133 (487)
+...++|..|...|+ .--+.-|...-..+-..|++.+|.+||..=.+.+-.|
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
No 326
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=34.81 E-value=77 Score=26.68 Aligned_cols=55 Identities=11% Similarity=0.010 Sum_probs=37.0
Q ss_pred hHHhcCChhhHHHHHHHHHhCCCCCCh------hhHHHHHHHHHhc---CChhHHHHHHHHHhh
Q 011378 4 ALCKDHKIDSAKMFLCEMEQKGVYPDT------VTYNTLINAYCRE---GFLEEAFQLMNSMSG 58 (487)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~~~g~~p~~------~~~~~ll~~~~~~---~~~~~a~~~~~~m~~ 58 (487)
.-++.|+.+....+++.+.+.|..++. ..-.+.+...+.. |+.+-+..+++.-..
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc
Confidence 457789999888899888888865543 1223455555566 888777777765443
No 327
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=34.64 E-value=1.2e+02 Score=24.58 Aligned_cols=18 Identities=22% Similarity=0.530 Sum_probs=10.3
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 011378 247 IHGHCKDGNMNKALNLFD 264 (487)
Q Consensus 247 i~~~~~~g~~~~a~~~~~ 264 (487)
+...++.|+.+....+++
T Consensus 6 L~~A~~~g~~~~v~~Ll~ 23 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLH 23 (228)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHh
Confidence 444556666666555554
No 328
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=34.24 E-value=2e+02 Score=24.09 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=4.2
Q ss_pred HHHHhcCChh
Q 011378 38 NAYCREGFLE 47 (487)
Q Consensus 38 ~~~~~~~~~~ 47 (487)
...++.|+.+
T Consensus 41 ~~A~~~g~~~ 50 (261)
T 2xai_A 41 HEACLGGHLS 50 (261)
T ss_dssp HHHHHHTCHH
T ss_pred HHHHHcCCHH
Confidence 3334444443
No 329
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=33.68 E-value=1.6e+02 Score=25.32 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=13.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 011378 35 TLINAYCREGFLEEAFQLMNSMSGKGLKPG 64 (487)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~ 64 (487)
+.+...+..|+.+.+..++ +.|..++
T Consensus 61 t~L~~Aa~~g~~~~v~~Ll----~~g~~~~ 86 (285)
T 3d9h_A 61 SPMHEAAIHGHQLSLRNLI----SQGWAVN 86 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHH----HTTCCSC
T ss_pred CHHHHHHHcCCHHHHHHHH----HCCCCCC
Confidence 4455556777765544443 4454444
No 330
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=33.55 E-value=1e+02 Score=24.17 Aligned_cols=61 Identities=13% Similarity=0.034 Sum_probs=35.6
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCH
Q 011378 125 EMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFREMKSA--GLVPDNVLYTIIINGYCRNGFV 186 (487)
Q Consensus 125 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~ 186 (487)
.+++.|++++.. -..++..+...+..-.|.++++.+++. +...+..|--.-|+.+...|-+
T Consensus 23 ~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 23 ILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 345667776653 345666666666666777777777665 5445554444444555555543
No 331
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.80 E-value=1.1e+02 Score=23.99 Aligned_cols=41 Identities=12% Similarity=0.048 Sum_probs=17.2
Q ss_pred HHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 011378 424 GFCRQGRMHDSELILWRMIEK--GLNPDRSTYTTLINGHVSQN 464 (487)
Q Consensus 424 ~~~~~g~~~~a~~~~~~m~~~--g~~p~~~ty~~l~~~~~~~~ 464 (487)
.+.+.+..-.|..+++.+.+. +...+..|.-.-++.+.+.|
T Consensus 41 ~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 41 TLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 333333444444444444443 33334444444444444433
No 332
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.48 E-value=1.7e+02 Score=22.60 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 011378 244 TTLIHGHCKDGNMNKALNLFDIM 266 (487)
Q Consensus 244 ~~li~~~~~~g~~~~a~~~~~~m 266 (487)
..+|.-|...|+.++|.+.++.+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34444444445555554444444
No 333
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=30.55 E-value=34 Score=21.68 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011378 222 TEADDLFNEMLERGVFPDFYTFTTLIHGH 250 (487)
Q Consensus 222 ~~a~~~~~~m~~~~~~~~~~t~~~li~~~ 250 (487)
++|++.|.+|++..-.+...||.-.|...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555555554432223335555555554
No 334
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.38 E-value=1.7e+02 Score=26.25 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=12.3
Q ss_pred HHHHHHHccCChhHHHHHHHHH
Q 011378 105 TLLVESCRKENMSEAEEIFCEM 126 (487)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~m 126 (487)
.++.-|...|+.++|.+.++++
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHc
Confidence 4555555555666555555554
No 335
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=30.08 E-value=73 Score=20.11 Aligned_cols=24 Identities=17% Similarity=0.057 Sum_probs=19.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCC
Q 011378 462 SQNNLKEAFRFHDEMLQRGFVPDD 485 (487)
Q Consensus 462 ~~~~~~~a~~~~~~m~~~g~~p~~ 485 (487)
..|+.+.|+..+-+|...++.|+.
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCCC
Confidence 348888888888888888888875
No 336
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=29.97 E-value=1.6e+02 Score=22.88 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=8.3
Q ss_pred HHhcCChhHHHHHHH
Q 011378 40 YCREGFLEEAFQLMN 54 (487)
Q Consensus 40 ~~~~~~~~~a~~~~~ 54 (487)
.++.|+.+.+..+++
T Consensus 12 A~~~g~~~~v~~ll~ 26 (179)
T 3f6q_A 12 QCREGNAVAVRLWLD 26 (179)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 345566665555554
No 337
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=29.86 E-value=2.9e+02 Score=24.42 Aligned_cols=126 Identities=15% Similarity=0.097 Sum_probs=64.0
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 011378 38 NAYCREGFLEEAFQLMNSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMS 117 (487)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 117 (487)
......|++-+|.+.+.. +..=|.+++++++|.+++..-. ..+.+.|+..
T Consensus 21 ~~~I~~G~yYEAhQ~~Rt---------------l~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~ 70 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLRT---------------IANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGG 70 (312)
T ss_dssp HHHHHHTCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHH
T ss_pred HHHhhccChHHHHHHHHH---------------HHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcc
Confidence 334556666666655543 3344556667777777655421 1222334444
Q ss_pred HHHH----HHHHHHHCCCCCCHhHHHHHHHHHHhCCC-----HHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCH
Q 011378 118 EAEE----IFCEMSRRGVAPDIVSFSTLIGIFSRNGQ-----LDRALMYFREMKSAGL--VPDNVLYTIIINGYCRNGFV 186 (487)
Q Consensus 118 ~a~~----~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~ 186 (487)
.|.+ +++...+.+++++.....-++..+..... .+-..+...+..+.|- .-|......+-..|.+.+++
T Consensus 71 sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~ 150 (312)
T 2wpv_A 71 SGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFV 150 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCH
Confidence 3333 34555566777777666666666554321 1122233333333322 12444555666666666666
Q ss_pred HHHHHHH
Q 011378 187 LEALKMR 193 (487)
Q Consensus 187 ~~a~~~~ 193 (487)
.+|..-|
T Consensus 151 ~~A~~H~ 157 (312)
T 2wpv_A 151 YEAERYF 157 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655433
No 338
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=28.93 E-value=3.3e+02 Score=24.71 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHH
Q 011378 69 NSLINGLCKKGRCDRAKEVLDEML 92 (487)
Q Consensus 69 ~~li~~~~~~~~~~~a~~~~~~m~ 92 (487)
..+|.-|...|+.++|.+.+.++.
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445555555566666666665553
No 339
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.83 E-value=2.2e+02 Score=22.33 Aligned_cols=51 Identities=10% Similarity=-0.018 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHHHHcCCcC--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 011378 183 NGFVLEALKMRDEMLEKGCVM--DVVTYNTILN-G-----LCRAKMLTEADDLFNEMLE 233 (487)
Q Consensus 183 ~~~~~~a~~~~~~m~~~g~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~m~~ 233 (487)
.|++-+|.+++++.....-.+ +...|..||+ . ..+.|+...|.+++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 367777777777766554444 4445666666 2 2346777777777777654
No 340
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.77 E-value=97 Score=23.18 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=18.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 011378 387 INGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQG 429 (487)
Q Consensus 387 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 429 (487)
++.+...+..-.|.++++.+++.+-..+..|.-..+..+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333334444455555555555443334444333333333333
No 341
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.66 E-value=97 Score=29.80 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=29.3
Q ss_pred ehHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCh--hhHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 011378 277 TYNTLIDGFCKVGEMEKANKLWADMISRKI-SPNY--ISYG-ILINGYCSMGHVTEAFRLWYEMVG 338 (487)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~t~~-~li~~~~~~~~~~~a~~~~~~m~~ 338 (487)
.+|.+++.|...+.++.|.++.....-... .++. .+|. .+-..+...+++.+|.+.+..-.+
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455666666666666666666655431100 0111 1111 112333445666677666655443
No 342
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=26.18 E-value=41 Score=20.72 Aligned_cols=42 Identities=12% Similarity=0.208 Sum_probs=27.8
Q ss_pred hhHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011378 3 NALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREG 44 (487)
Q Consensus 3 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~ 44 (487)
+.|.+..-.+....++++=++.|..+...+++++.+.+...|
T Consensus 4 q~Yvs~~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLG 45 (55)
T 1dp3_A 4 QAYVSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELG 45 (55)
T ss_dssp SSCCCCTHHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHT
T ss_pred eeehhhHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHh
Confidence 345555556666667777677777777777777777766554
No 343
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.07 E-value=2.1e+02 Score=23.69 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=10.4
Q ss_pred HHHHhcCChhhHHHHHHHHH
Q 011378 73 NGLCKKGRCDRAKEVLDEML 92 (487)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~ 92 (487)
-.|.+.|.+++|.+++++..
T Consensus 122 ~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHhcchHHHHHHHHHHh
Confidence 34555555555555555543
No 344
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=25.98 E-value=2.5e+02 Score=23.54 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=9.9
Q ss_pred HHHHHHhcCChhHHHHHH
Q 011378 36 LINAYCREGFLEEAFQLM 53 (487)
Q Consensus 36 ll~~~~~~~~~~~a~~~~ 53 (487)
.+...++.|+.+.+..++
T Consensus 6 ~L~~A~~~g~~~~v~~Ll 23 (261)
T 2xai_A 6 PMHEAAIHGHQLSLRNLI 23 (261)
T ss_dssp HHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 345556667765544444
No 345
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=25.11 E-value=2.2e+02 Score=21.29 Aligned_cols=19 Identities=26% Similarity=0.177 Sum_probs=9.6
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 011378 36 LINAYCREGFLEEAFQLMN 54 (487)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~ 54 (487)
.+...++.|+.+....+++
T Consensus 5 ~L~~A~~~g~~~~v~~Ll~ 23 (153)
T 1awc_B 5 KLLEAARAGQDDEVRILMA 23 (153)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3444455566555554444
No 346
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=25.06 E-value=3.6e+02 Score=23.85 Aligned_cols=164 Identities=13% Similarity=0.032 Sum_probs=82.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCChhhHHHHHHHH
Q 011378 280 TLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRL----WYEMVGKGIKPTLVSCNTIIKGY 355 (487)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~li~~~ 355 (487)
++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .+...+.+++++......|+..+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4445566666666666665432 1123334544444332 34444566667666666666655
Q ss_pred HhcCC-----hHHHHHHHHHHHHCCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 011378 356 CRSGD-----ASKADEFLSKMVSEGV--DPDSISYNTLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQ 428 (487)
Q Consensus 356 ~~~~~-----~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 428 (487)
..... .+-..+.+....+.|- .-|+.....+-..|.+.+++.+|+.-|-. |-.=|...+..++.-+.+.
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHh
Confidence 44221 1112222333333322 13566677777888888888888775531 1000234455554444444
Q ss_pred ---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011378 429 ---GRMHDSELILWRMIEKGLNPDRSTYTTLINGHVSQNNLKEAFRFHDEML 477 (487)
Q Consensus 429 ---g~~~~a~~~~~~m~~~g~~p~~~ty~~l~~~~~~~~~~~~a~~~~~~m~ 477 (487)
|..+++-..+-+ .+-.|+..|+...|..+++...
T Consensus 179 ~~~~~~~e~dlf~~R---------------aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 179 VDDIEDSTVAEFFSR---------------LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TTCCCHHHHHHHHHH---------------HHHHHHHTTBHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHH---------------HHHHHHHhcCHHHHHHHHHHHH
Confidence 555554332222 2233445567777777766554
No 347
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.06 E-value=1.2e+02 Score=25.33 Aligned_cols=52 Identities=19% Similarity=0.121 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 011378 327 TEAFRLWYEMVGKGIKPTLV-SCNTIIKGYCRSGDASKADEFLSKMVSEGVDP 378 (487)
Q Consensus 327 ~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 378 (487)
++...+|..|..+||..... .|...-..+...|++.+|.++|+.=++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35556666676666665443 45666666666677777777777666666555
No 348
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.01 E-value=1.7e+02 Score=24.46 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh
Q 011378 117 SEAEEIFCEMSRRGVAPD-IVSFSTLIGIFSRNGQLDRALMYFREMKSAGLVPDN 170 (487)
Q Consensus 117 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 170 (487)
++..++|..|...||.-. ..-|-.-...+-..|++.+|.++|+.-.+.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 578889999999888654 345666777788899999999999988887777743
No 349
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.98 E-value=98 Score=23.49 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=22.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 011378 385 TLINGFVREENMDKAFALVSKMENQGLVPDVITYNVILTGFCRQG 429 (487)
Q Consensus 385 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 429 (487)
.++..+...+..-.|.++++.+++.+-..+..|.-.-+..+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344444444445556666666665544444444333334444444
No 350
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=24.95 E-value=6.1e+02 Score=26.45 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCh---hHHHHHHHHHhhC----CCCCCccchHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 011378 35 TLINAYCREGFL---EEAFQLMNSMSGK----GLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLL 107 (487)
Q Consensus 35 ~ll~~~~~~~~~---~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 107 (487)
.++...|+.|+. +.|.+.|+..... .+.||.. ..++..-.+.|..+.-..+++..... .+..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHH
Confidence 355556666653 3556666654432 1334432 22333334455555555555555542 2333344566
Q ss_pred HHHHccCChhHHHHHHHHHHH
Q 011378 108 VESCRKENMSEAEEIFCEMSR 128 (487)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~ 128 (487)
.+++...+.....++++....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTC
T ss_pred HHhCCCCCHHHHHHHHHHHhC
Confidence 666666666666666665543
No 351
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.75 E-value=2.5e+02 Score=21.83 Aligned_cols=101 Identities=12% Similarity=0.031 Sum_probs=51.8
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHHHHH
Q 011378 80 RCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALMYFR 159 (487)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 159 (487)
..+....+++.+.+.|+.-|..--...+....+.| .....+-.++.+.|+.++.. ...+..+. ....+.|..+.+
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~~i--~~al~~~~-~d~~~~a~~l~~ 119 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISREAT--EKAMREAD-IDWAALARDQAT 119 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHHHH--HHHHHHHC-CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHHHH--HHHHHHcC-HhHHHHHHHHHH
Confidence 34556677777788777655555555566555543 34566777888888865442 23333321 123444555544
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCC
Q 011378 160 EMKSAGLVPDNVLYTIIINGYCRNGF 185 (487)
Q Consensus 160 ~m~~~g~~~~~~~~~~ll~~~~~~~~ 185 (487)
.--.....++.....-++..+.+.|+
T Consensus 120 kk~~~~~~~~~~~~~K~~~~L~rrGF 145 (159)
T 3c1d_A 120 RKYGEPLPTVFSEKVKIQRFLLYRGY 145 (159)
T ss_dssp HHHCSSCCCSHHHHHHHHHHHHHTTC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 32111112233334444444444444
No 352
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=24.08 E-value=2.4e+02 Score=21.40 Aligned_cols=14 Identities=0% Similarity=-0.192 Sum_probs=6.1
Q ss_pred HhcCChhhHHHHHH
Q 011378 6 CKDHKIDSAKMFLC 19 (487)
Q Consensus 6 ~~~~~~~~a~~~~~ 19 (487)
++.|+++....+++
T Consensus 11 ~~~g~~~~v~~ll~ 24 (167)
T 3v31_A 11 AAQGEMLYLATRIE 24 (167)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHH
Confidence 34444444444443
No 353
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.04 E-value=1.6e+02 Score=26.52 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCC
Q 011378 312 SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSG-DASKADEFLSKMVSEGVD 377 (487)
Q Consensus 312 t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~ 377 (487)
....++.=|...|+.++|.+.++++......+ ..+...+..++-+.. ..+.+..++..+.+.|+-
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 35678888888899999988888774222111 122333333333221 234566677777766553
No 354
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=24.03 E-value=2.5e+02 Score=21.75 Aligned_cols=43 Identities=9% Similarity=0.106 Sum_probs=18.9
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHhHH--HHHHHHHHhCCCHHHHHHH
Q 011378 111 CRKENMSEAEEIFCEMSRRGVAPDIVSF--STLIGIFSRNGQLDRALMY 157 (487)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~ 157 (487)
+..|+.+ +.+.+.+.|..++.... .+.+...++.|+.+-+..+
T Consensus 78 ~~~g~~~----~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~L 122 (169)
T 4gpm_A 78 AENGHKE----VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122 (169)
T ss_dssp HHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHH----HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 3455544 33334455555443211 1233444556666544433
No 355
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=23.89 E-value=6.3e+02 Score=26.30 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=12.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Q 011378 279 NTLIDGFCKVGEMEKANKLWADMI 302 (487)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m~ 302 (487)
..++.+++...+.+...+++....
T Consensus 762 ~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 762 DKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHh
Confidence 345555555555555555554433
No 356
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=23.57 E-value=5.4e+02 Score=25.37 Aligned_cols=116 Identities=10% Similarity=0.134 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHhCC-CCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 011378 290 EMEKANKLWADMISRK-ISPNYI--SYGILINGYCSMGHVTEAFRLWYEMVGKGIKPTLVSCNTIIKGYCRSGDASKADE 366 (487)
Q Consensus 290 ~~~~a~~~~~~m~~~~-~~p~~~--t~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 366 (487)
+.+.|...|....... +.+... .+..+.......+...++...+....... ++.....-.+....+.|+.+.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence 6788888887775433 222211 12222223333443445555555544332 333334444555557788888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 011378 367 FLSKMVSEGVDPDSISYNTLINGFVREENMDKAFALVSKMEN 408 (487)
Q Consensus 367 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (487)
.|+.|......-+...|- +-.++.+.|+.++|..++.....
T Consensus 307 ~~~~l~~~~~~~~r~~YW-~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 307 WLARLPMEAKEKDEWRYW-QADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHSCTTGGGSHHHHHH-HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHccccccccHhHHHH-HHHHHHHcCCHHHHHHHHHHHhc
Confidence 888776532221222222 22344567888888888887764
No 357
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=23.32 E-value=1.4e+02 Score=25.03 Aligned_cols=10 Identities=10% Similarity=0.238 Sum_probs=4.3
Q ss_pred HHHHCCCCCC
Q 011378 265 IMTQKSIKPD 274 (487)
Q Consensus 265 ~m~~~~~~~~ 274 (487)
.+.+.|..++
T Consensus 208 ~Ll~~ga~~~ 217 (253)
T 1yyh_A 208 VLLDHFANRD 217 (253)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHcCCCcc
Confidence 3344444443
No 358
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=23.15 E-value=1.6e+02 Score=22.63 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred hhhHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCccchH--HHHHHHHhcC
Q 011378 2 VNALCKDHKIDSAKMFLCEMEQKGVYPDTVTYNTLINAYCREGFLEEAFQLMNSMSGKGLKPGVFTYN--SLINGLCKKG 79 (487)
Q Consensus 2 i~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~~ 79 (487)
+...++.|+++....+++.-...-..+|..-++.+..++.... .++++.+.+.|..++..... ..+...++.|
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGE-----IETVRFLLEWGADPHILAKERESALSLASTGG 80 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTC-----HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCchhhcccCCCHHHHHHHCC
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHH--HHHHHHHhCCCHHHHHHH
Q 011378 80 RCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFS--TLIGIFSRNGQLDRALMY 157 (487)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~ 157 (487)
+.+-+..+++. ...+......-.+.+...+..++.+ +++.+.+.|..++..... +.+...++.|+.+-+..+
T Consensus 81 ~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L 154 (172)
T 3v30_A 81 YTDIVGLLLER--DVDINIYDWNGGTPLLYAVRGNHVK----CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154 (172)
T ss_dssp CHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHH
Q ss_pred HHHHHH
Q 011378 158 FREMKS 163 (487)
Q Consensus 158 ~~~m~~ 163 (487)
++...+
T Consensus 155 ~~~~~~ 160 (172)
T 3v30_A 155 ENHILK 160 (172)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 359
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.78 E-value=2.4e+02 Score=20.99 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 011378 244 TTLIHGHCKDGNMNKALNLFDIM 266 (487)
Q Consensus 244 ~~li~~~~~~g~~~~a~~~~~~m 266 (487)
..++.-|...|+.++|.+.++.+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34444444444444444444444
No 360
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.71 E-value=1.9e+02 Score=23.96 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHh--H-----HHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 011378 116 MSEAEEIFCEMSRRGVAPDIV--S-----FSTLIGIFSRNGQLDRALMYFREMKSA 164 (487)
Q Consensus 116 ~~~a~~~~~~m~~~g~~p~~~--~-----~~~li~~~~~~g~~~~a~~~~~~m~~~ 164 (487)
++.|+.+|+.+.+.--.++.. . --..+..|.+.|.+++|.+++++.-..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 456666777666543222211 0 113566899999999999999987653
No 361
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=21.86 E-value=4.5e+02 Score=23.82 Aligned_cols=61 Identities=20% Similarity=0.307 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----ccchHHHHHHHHhcC-ChhhHHHHHHHHHHCCCC
Q 011378 33 YNTLINAYCREGFLEEAFQLMNSMSGKGLKPG----VFTYNSLINGLCKKG-RCDRAKEVLDEMLQMGLS 97 (487)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~ 97 (487)
...+|.-|...|+.++|.+.++++.. |+ ..++..+..++-+.. ..+.+..++..+...|+-
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~l 80 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIA 80 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCC
Confidence 45678888888999999999988853 33 123333333443321 234555566666665543
No 362
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=21.75 E-value=1.7e+02 Score=24.46 Aligned_cols=171 Identities=10% Similarity=-0.023 Sum_probs=83.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcc---chHHHHHHHHhcCChhhHHHHHHHHHHCCC-CC---CHHHHHHH
Q 011378 34 NTLINAYCREGFLEEAFQLMNSMSGKGLKPGVF---TYNSLINGLCKKGRCDRAKEVLDEMLQMGL-SP---DTATYNTL 106 (487)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~---~~~~~~~l 106 (487)
.+.+...++.|+.+-+..++ +.|..++.. .++.|..+ +..|+.+-+ +.+.+.|- .+ +..-++.
T Consensus 58 ~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A-~~~~~~~~v----~~Ll~~~~~~~~~~~~~g~t~- 127 (253)
T 1yyh_A 58 ETALHLAARYSRSDAAKRLL----EASADANIQDNMGRTPLHAA-VSADAQGVF----QILIRNRATDLDARMHDGTTP- 127 (253)
T ss_dssp CCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHH-HHHTCHHHH----HHHHHSTTSCTTCCCTTCCCH-
T ss_pred CcHHHHHHHcCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHH-HHcCCHHHH----HHHHHcCCCCccccCCCCCcH-
Confidence 34566667888876655444 456555543 33444444 455665544 34444432 22 2222333
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHh
Q 011378 107 LVESCRKENMSEAEEIFCEMSRRGVAPDIVS--FSTLIGIFSRNGQLDRALMYFREMKSAGLVPDNVL--YTIIINGYCR 182 (487)
Q Consensus 107 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~ 182 (487)
+...+..++.+-+. .+.+.|..++... -.+.+...++.|+.+.+..++ +.|..++... -.+-+...++
T Consensus 128 L~~A~~~~~~~~v~----~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~tpL~~A~~ 199 (253)
T 1yyh_A 128 LILAARLAVEGMLE----DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL----KNGANKDMQNNREETPLFLAAR 199 (253)
T ss_dssp HHHHHHHTCSSHHH----HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcChHHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHH
Confidence 33444566665444 4444666554322 123455556677776555444 4565544321 1223344455
Q ss_pred cCCHHHHHHHHHHHHHcCCcCChhhH--HHHHHHHHhcCCHHHHHH
Q 011378 183 NGFVLEALKMRDEMLEKGCVMDVVTY--NTILNGLCRAKMLTEADD 226 (487)
Q Consensus 183 ~~~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~~~~~~a~~ 226 (487)
.|+.+ +++.+.+.|..++.... .+-+....+.|..+-+.-
T Consensus 200 ~~~~~----~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~ 241 (253)
T 1yyh_A 200 EGSYE----TAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 241 (253)
T ss_dssp HTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred CCCHH----HHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHH
Confidence 66654 45556667766654321 123343445555544433
No 363
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.75 E-value=5.4e+02 Score=24.71 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=33.2
Q ss_pred cchHHHHHHHHhcCChhhHHHHHHHHHHCCC-CCCH--HHHHH-HHHHHHccCChhHHHHHHHHHHH
Q 011378 66 FTYNSLINGLCKKGRCDRAKEVLDEMLQMGL-SPDT--ATYNT-LLVESCRKENMSEAEEIFCEMSR 128 (487)
Q Consensus 66 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~--~~~~~-ll~~~~~~~~~~~a~~~~~~m~~ 128 (487)
..+|.+++.|...+.++.|.++.....---. .+|. .+|.- +-+.++-.+++.+|.+-|.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3466667777777777777777776531100 0111 12221 12334456777777776666543
No 364
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.68 E-value=2.9e+02 Score=21.61 Aligned_cols=52 Identities=6% Similarity=-0.013 Sum_probs=38.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHH-H-----HHhcCChHHHHHHHHHHHH
Q 011378 322 SMGHVTEAFRLWYEMVGKGIKP--TLVSCNTIIK-G-----YCRSGDASKADEFLSKMVS 373 (487)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~m~~ 373 (487)
..|++-+|-++|++.-...-.+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3488999999998887665555 5567778888 2 2357888888888887654
No 365
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=21.62 E-value=1.5e+02 Score=21.97 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhC--CCC-----------CChhhHHHHHHHHHhcCC---hhHHHHHHHHHhhCCC
Q 011378 13 SAKMFLCEMEQK--GVY-----------PDTVTYNTLINAYCREGF---LEEAFQLMNSMSGKGL 61 (487)
Q Consensus 13 ~a~~~~~~~~~~--g~~-----------p~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~ 61 (487)
....++..|... |++ |+.++-..++..+.+.+. -.+|..+.+.+.+.|+
T Consensus 7 ~l~~L~~~m~~~~~Gv~i~~rr~~~k~y~~cF~GsdlVdWL~~~~~~~sR~eAv~lgq~Ll~~G~ 71 (120)
T 1v3f_A 7 GLHRIVDKMHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLISSNFAASRLEAVTLASMLMEENF 71 (120)
T ss_dssp HHHHHHHHHTCSSSSCCCCCCCSSSSCCSSCEEHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHhCccCCCeeeeeEEccEEccceeehHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 466777888653 543 667777888888887653 3678888777777664
No 366
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.90 E-value=4.3e+02 Score=23.25 Aligned_cols=25 Identities=12% Similarity=0.389 Sum_probs=20.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 011378 138 FSTLIGIFSRNGQLDRALMYFREMK 162 (487)
Q Consensus 138 ~~~li~~~~~~g~~~~a~~~~~~m~ 162 (487)
...+|.-|-..|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4578888888899999988888764
No 367
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.89 E-value=78 Score=23.49 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=26.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCHHHHHH
Q 011378 105 TLLVESCRKENMSEAEEIFCEMSRRGVAPDIVSFSTLIGIFSRNGQLDRALM 156 (487)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 156 (487)
..|...+.+++.+-|+++++-..+.| +-..|.+.+-.|..-=++|.+++
T Consensus 37 DAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 37 DAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp HHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 34444555556666666666555554 44455555555555555554443
No 368
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=20.53 E-value=5e+02 Score=23.88 Aligned_cols=229 Identities=11% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHHHHhCCC--HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH------HHHHHHHHHH--------------c
Q 011378 142 IGIFSRNGQ--LDRALMYFREMKSAGLVPDNVLYTIIINGYCRNGFVLE------ALKMRDEMLE--------------K 199 (487)
Q Consensus 142 i~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~------a~~~~~~m~~--------------~ 199 (487)
+-.++++|. ++.++.+...+.. +.+...|..++..+........ ....+..... .
T Consensus 115 ~~~La~ag~~~~~~~l~l~~yL~~---E~~y~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lgw~~~ 191 (419)
T 3rjo_A 115 AFQLVSIGKLSIEKALDLSLYLKH---ETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDE 191 (419)
T ss_dssp HHHHHHHTSSCHHHHHHHHGGGGG---CCSHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHCCSSCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHhcc---cchHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHcCCCCC
Q ss_pred CCcCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011378 200 GCVMDVVTYNTILNGLCRAKM---LTEADDLFNEMLERGVF--PDFYTFTTLIHGHCKDGNMNKALNLFDIMTQKSIKPD 274 (487)
Q Consensus 200 g~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~--~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 274 (487)
+-..+...-..++...|..|+ .+.|.+.|+...+.+.. +.+..-..+...-.+. .+.-..+++..... .+
T Consensus 192 ~~~~~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~~--~~~~~~l~~~y~~s---~~ 266 (419)
T 3rjo_A 192 GSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQS--TEGWDFLYSKYQFS---LS 266 (419)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTTS--HHHHHHHHHHHHHC---CC
T ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeCC--HHHHHHHHHHHhcC---CC
Q ss_pred eeehHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH---HHhCCCCCChhhHHHH
Q 011378 275 IVTYNTLIDGFCKVGEMEKANKLWADMISRKISPNYISYGILINGYCSMGHVTEAFRLWYE---MVGKGIKPTLVSCNTI 351 (487)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~~~~a~~~~~~---m~~~~~~~~~~~~~~l 351 (487)
..--..++.+++...+.+...+++.......+-........+.......-..+.|.+.+.+ .....+.++...+..+
T Consensus 267 ~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~~~~~~~~~~ 346 (419)
T 3rjo_A 267 STEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHM 346 (419)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhCcCchhHHHH
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC
Q 011378 352 IKGYCRSGDASKADEFLSKMVSEGVDP 378 (487)
Q Consensus 352 i~~~~~~~~~~~a~~~~~~m~~~g~~p 378 (487)
|......-..++-.+-++...+..-.+
T Consensus 347 i~~~~~~~~t~~~l~e~~~Ff~~~~~~ 373 (419)
T 3rjo_A 347 VMGTTNQFSTRTRLEEVKGFFSSLKEN 373 (419)
T ss_dssp HHHTTTTCCSHHHHHHHHHHHHTTTTC
T ss_pred HHHHhhcCCCHHHHHHHHHHHHhCccc
No 369
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.48 E-value=2.1e+02 Score=21.21 Aligned_cols=10 Identities=40% Similarity=0.537 Sum_probs=3.8
Q ss_pred hHHHHHHHHH
Q 011378 83 RAKEVLDEML 92 (487)
Q Consensus 83 ~a~~~~~~m~ 92 (487)
.|.++++.+.
T Consensus 28 sa~ei~~~l~ 37 (131)
T 2o03_A 28 SAQELHDELR 37 (131)
T ss_dssp EHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3333333333
Done!