Query 011379
Match_columns 487
No_of_seqs 268 out of 1771
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 06:55:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gtd_A Fumarase C, fumarate hy 100.0 4E-122 1E-126 972.0 45.1 450 33-484 21-482 (482)
2 3e04_A Fumarase, fumarate hydr 100.0 4E-122 1E-126 972.6 43.0 451 36-486 29-490 (490)
3 4hgv_A Fumarase C, fumarate hy 100.0 6E-119 2E-123 955.4 45.6 452 33-486 32-495 (495)
4 3ocf_A Fumarate lyase:delta cr 100.0 4E-118 1E-122 944.3 44.3 444 37-482 23-478 (478)
5 3r6q_A Aspartase; aspartate am 100.0 2E-117 7E-122 938.8 44.7 447 36-485 4-462 (468)
6 4adm_A Fumarase C, fumarate hy 100.0 1E-115 4E-120 929.0 44.5 445 34-486 29-489 (495)
7 1yfm_A Fumarase, YFUM; lyase, 100.0 5E-115 2E-119 924.0 45.5 449 36-486 27-488 (488)
8 1fur_A Fumarase C, FUMC; hydro 100.0 1E-112 4E-117 904.7 47.2 447 37-486 4-463 (467)
9 1jsw_A L-aspartase, L-aspartat 100.0 2E-111 8E-116 897.3 46.0 447 36-486 4-466 (478)
10 1vdk_A Fumarase C, fumarate hy 100.0 3E-111 1E-115 894.3 41.3 449 37-486 3-463 (466)
11 1re5_A 3-carboxy-CIS,CIS-mucon 100.0 2.7E-83 9.3E-88 678.6 32.8 399 50-485 5-433 (450)
12 3c8t_A Fumarate lyase; structu 100.0 1.4E-82 4.9E-87 672.9 37.3 396 50-485 7-431 (451)
13 1q5n_A 3-carboxy-CIS,CIS-mucon 100.0 2.2E-82 7.6E-87 672.3 36.7 402 50-485 7-437 (454)
14 1c3c_A Protein (adenylosuccina 100.0 4.8E-82 1.6E-86 665.3 35.8 387 54-485 3-419 (429)
15 2pfm_A Adenylosuccinate lyase; 100.0 1.3E-81 4.3E-86 664.2 38.4 388 54-485 13-431 (444)
16 2e9f_A Argininosuccinate lyase 100.0 1E-82 3.5E-87 675.2 29.3 400 51-485 2-436 (462)
17 1k7w_A Delta 2 crystallin; eye 100.0 3.4E-82 1.2E-86 672.2 27.4 403 48-485 4-438 (468)
18 1tj7_A Argininosuccinate lyase 100.0 5.3E-80 1.8E-84 653.6 30.0 399 53-484 2-432 (457)
19 1dof_A Adenylosuccinate lyase; 100.0 3.6E-78 1.2E-82 630.6 34.9 365 50-463 5-373 (403)
20 2ptr_A Adenylosuccinate lyase; 100.0 2.7E-78 9.3E-83 641.6 23.9 404 50-485 11-447 (462)
21 4eei_A Adenylosuccinate lyase; 100.0 1.6E-74 5.5E-79 607.9 30.5 387 53-485 3-421 (438)
22 2j91_A Adenylosuccinate lyase; 100.0 1.1E-73 3.7E-78 611.0 30.1 408 40-485 28-474 (503)
23 1yis_A Adenylosuccinate lyase; 100.0 3.8E-73 1.3E-77 604.8 32.7 401 47-485 7-446 (478)
24 2fel_A 3-carboxy-CIS,CIS-mucon 100.0 8.4E-73 2.9E-77 581.2 25.9 342 53-434 13-355 (359)
25 3bhg_A Adenylosuccinate lyase; 100.0 2.7E-66 9.4E-71 549.2 31.1 395 50-485 14-450 (459)
26 2qga_B Adenylosuccinate lyase; 100.0 1.9E-67 6.5E-72 559.0 22.1 398 50-485 10-449 (465)
27 1fgl_B HIV-1 GAG protein; cycl 21.2 30 0.001 21.1 0.8 15 218-232 1-15 (26)
No 1
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=100.00 E-value=4.3e-122 Score=971.98 Aligned_cols=450 Identities=62% Similarity=0.969 Sum_probs=433.3
Q ss_pred ccccccccccCCCCccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHH
Q 011379 33 YSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAA 111 (487)
Q Consensus 33 ~~~~~r~e~d~~g~~~~p~~~~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~ 111 (487)
.|+++|+|+|++|+++||.|+|||+||+|+++||+|||. ++|+++|++|+.||+|+|.+|.++| ||++.+++|.++|
T Consensus 21 ~~~~~r~e~d~~g~~~vp~~~~~g~qt~Ra~~nf~i~~~--~~~~~~i~a~~~vk~AaA~an~~~G~l~~~~a~aI~~a~ 98 (482)
T 3gtd_A 21 SMKNYRIESDSFGEIQIEEKFYWGAQTQRSLNNFKISKQ--KMPKILIRALAILKKCAAQVNYEFGDLEYKIATSIDKAI 98 (482)
T ss_dssp ---CEEEEEETTEEEEEETTCCCCHHHHHHHHHCCCCSC--BCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ccccCcCccccCCCccCCcccccCHHHHHHHHhccccCC--CCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445689999999999999999999999999999999997 6899999999999999999999999 9999999999999
Q ss_pred HHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-cccccccCCCCChhhHHHHHHHHHHHHHHH
Q 011379 112 QEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETN 190 (487)
Q Consensus 112 ~~v~~~~~~~~f~~~~~~~~~~~~~~~~~~evi~~~~~e~lg~~~g~~~-iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~ 190 (487)
++|.+|+++++||+++||+|+||++|||+||||+|+++|++|++.|+|. +|||||||+||||||++||+++|++++++.
T Consensus 99 ~ev~~g~~~~~fp~~~~q~gsGt~~Nmn~NevIa~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~ 178 (482)
T 3gtd_A 99 DRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATK 178 (482)
T ss_dssp HHHHHTTTTTSCCCBSSSCTTCHHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcccCCCeehhccCCCccccchHHHHHHHHHHHHhCcccCCcCcCCccccCCCCCChhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998899885 899999999999999999999999988765
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCC
Q 011379 191 SRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLN 270 (487)
Q Consensus 191 ~~l~~~L~~L~~~L~~~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~ 270 (487)
+.|.+.|..|+++|.+||++|+|++|+||||+|||+|+||||||++|+++|.|+++||++++++++.+|||||||||+++
T Consensus 179 ~~L~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~P~TlG~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~ 258 (482)
T 3gtd_A 179 QQLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGIN 258 (482)
T ss_dssp HTHHHHHHHHHHHHHHHHTTGGGCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTTTEECTTCTTTSSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcEeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCCCC
Q 011379 271 TKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPG 350 (487)
Q Consensus 271 ~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~~G 350 (487)
++++|+.++.++++++|||++++.+|++|++++||+++|++++|+.++++|+|||+||++|+||||+|||||.+|++++|
T Consensus 259 ~~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~~~G 338 (482)
T 3gtd_A 259 SKIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGELHLPENEPG 338 (482)
T ss_dssp SCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCC
T ss_pred CCchhHHHHHHHHHHHhCCCCccccchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCeeEEECCCCCCC
Confidence 99999999999999999999878999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhhHHHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHH
Q 011379 351 SSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRER 430 (487)
Q Consensus 351 SSiMP~K~NP~~~E~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~er 430 (487)
||||||||||+.+|.++++|++|+|+++++++++..++||+|+++|++.|+++++++++.+++..|+.+|++||+||++|
T Consensus 339 SSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~pl~~~~~l~s~~ll~~~~~~~~~~~v~gl~vn~er 418 (482)
T 3gtd_A 339 SSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIAR 418 (482)
T ss_dssp CSSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEECHHH
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh----------hhcHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccC
Q 011379 431 ISKLLHE----------KIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 484 (487)
Q Consensus 431 m~~~l~~----------~ig~~~A~~ia~~a~~~g~~~re~~~~~~~l~~eel~~~ldP~~~~g 484 (487)
|+++++. ++||+.|+++|++|+++|++|+|++.+.+.||++||+++|||++|+|
T Consensus 419 m~~~l~~s~~lvTaLa~~iGy~~a~~ia~~A~~~g~~l~e~~~~~~~ls~eeld~~ldP~~~~g 482 (482)
T 3gtd_A 419 INTLRDKSLMLVTVLNPHIGYDNAAKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMIS 482 (482)
T ss_dssp HHHHHHHCGGGHHHHHHHHCHHHHHHHHHHHHHHTCCHHHHHHHTTSCCHHHHHHHHSCC----
T ss_pred HHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHcCHHHhcC
Confidence 9999986 78999999999999999999999999999999999999999999987
No 2
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.2e-122 Score=972.61 Aligned_cols=451 Identities=71% Similarity=1.107 Sum_probs=434.3
Q ss_pred cccccccCCCCccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 011379 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVA 115 (487)
Q Consensus 36 ~~r~e~d~~g~~~~p~~~~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~Gi~~~~a~~I~~a~~~v~ 115 (487)
++|+|+|++|+++||.|+|||+||+|+++||+|||...++|+.+|++++.||+|+|.+|.++|||++.+++|.++|++|.
T Consensus 29 ~~r~e~D~~G~~~vp~~~~~g~qt~ra~~nf~i~~~~~~~~~~~i~a~~~vkkAaA~an~~~Gl~~~~a~aI~~a~~ev~ 108 (490)
T 3e04_A 29 SFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDYGLDPKIANAIMKAADEVA 108 (490)
T ss_dssp CEEEEEETTEEEEEETTCCCCHHHHHHHHHCCCSCGGGBCCHHHHHHHHHHHHHHHHHGGGGTCCHHHHHHHHHHHHHHH
T ss_pred CCCcccccCcCccCcchhhhhHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999766789999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-cccccccCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 011379 116 EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 194 (487)
Q Consensus 116 ~~~~~~~f~~~~~~~~~~~~~~~~~~evi~~~~~e~lg~~~g~~~-iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~l~ 194 (487)
+|+++++||+++||+|+||++|||+||||+|+++|++|++.|+|. ||||||||+||||||++||+++|++++++.+.|.
T Consensus 109 ~g~~~~~Fp~~~~q~Gsgt~~nmn~NEvia~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~ 188 (490)
T 3e04_A 109 EGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLL 188 (490)
T ss_dssp TTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cCCcccCCceeeecCCCCCcccccHHHHHHHHHHHHhCcccCCCCCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998899885 7999999999999999999999999887656799
Q ss_pred HHHHHHHHHHHHHHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCCCC
Q 011379 195 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 274 (487)
Q Consensus 195 ~~L~~L~~~L~~~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~~~ 274 (487)
+.|..|+++|.+||++|+|++|+||||+|||+|+||||||++|+++|.|+++||++++++++.+|||||||||+++++++
T Consensus 189 ~~L~~L~~aL~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtAvGTg~~~~~~ 268 (490)
T 3e04_A 189 PGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAVGTGLNTRIG 268 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTCTTTSEECTTCTTTSSCTTSCTT
T ss_pred HHHHHHHHHHHHHHHHhhCceeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCcCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCCCCCCCC
Q 011379 275 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIM 354 (487)
Q Consensus 275 ~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~~GSSiM 354 (487)
|+.++.++++++|||++++.+|++|++++||+++|++++|+.++++|+|||+||++|+||||+|||||.+|++++|||||
T Consensus 269 ~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~ve~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~~~GSSiM 348 (490)
T 3e04_A 269 FAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILPENEPGSSIM 348 (490)
T ss_dssp HHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCC----
T ss_pred HHHHHHHHHHHHhCCCCcCCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEECCCCCCCCCCC
Confidence 99999999999999998789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhHHHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHH
Q 011379 355 PGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434 (487)
Q Consensus 355 P~K~NP~~~E~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~~ 434 (487)
||||||+.+|.++++|++|+|+++++++++.+++||+|+++|++.++++++++++.+++..|+.+|++||+||++||+++
T Consensus 349 P~K~NPv~~E~i~~~a~~v~G~~~ai~~a~~~g~~eln~~~p~~~~~ll~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~ 428 (490)
T 3e04_A 349 PGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKL 428 (490)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh----------hhcHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 011379 435 LHE----------KIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 486 (487)
Q Consensus 435 l~~----------~ig~~~A~~ia~~a~~~g~~~re~~~~~~~l~~eel~~~ldP~~~~g~~ 486 (487)
++. ++||+.|+++|++|+++|++++|++.+.+.||++||+++|||++|+||+
T Consensus 429 l~~s~~lvTaLa~~iGy~~a~~iak~A~~~g~~l~e~~~~~~~ls~eeld~~ldP~~~~g~~ 490 (490)
T 3e04_A 429 MNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGPK 490 (490)
T ss_dssp HHHCSGGGGGGHHHHCHHHHHHHHHHHHHHTCCHHHHHHHHTSCCHHHHHHHCCGGGSSCC-
T ss_pred HhhchHHHHHhhhHHHHHHHHHHHHHHHHHCCCHHHHHHHcCCCCHHHHHHHcCHHHhcCCC
Confidence 987 7899999999999999999999999999999999999999999999985
No 3
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=100.00 E-value=6.4e-119 Score=955.40 Aligned_cols=452 Identities=64% Similarity=0.980 Sum_probs=434.2
Q ss_pred ccccccccccCCCCccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHH
Q 011379 33 YSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAA 111 (487)
Q Consensus 33 ~~~~~r~e~d~~g~~~~p~~~~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~ 111 (487)
.|+++|+|+|++|+++||.|+|||+||+|+++||+||+. ++|+++|++++.||+|+|++|.++| ||++.+++|.++|
T Consensus 32 ~m~~~r~e~d~~g~~~vp~~~~~g~qt~ra~~nf~i~~~--~~~~~~i~a~~~vk~AaA~an~~lG~l~~~~a~aI~~A~ 109 (495)
T 4hgv_A 32 TMTSTRTETDTFGPIEVASDRYWGAQAQRSLGNFKIGWE--KQPLAIVRALGIVKQAAARANMALGRLDPAIGDAIVKAA 109 (495)
T ss_dssp ---CEEEEEETTEEEEEETTCCCCHHHHHHHHHCCCCSC--BCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCCCeeeecCCCCccCCCccchHHHHHHHHHccCCCCC--CCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356799999999999999999999999999999999987 7999999999999999999999999 9999999999999
Q ss_pred HHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-cccccccCCCCChhhHHHHHHHHHHHHHHH
Q 011379 112 QEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETN 190 (487)
Q Consensus 112 ~~v~~~~~~~~f~~~~~~~~~~~~~~~~~~evi~~~~~e~lg~~~g~~~-iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~ 190 (487)
++|.+|+++++||+|+||+|+||++|||+||||+|++.|++|.+.|.|. +|||||||+||||||++|||++|++++++.
T Consensus 110 ~ei~~g~~~~~F~~d~~q~gsgt~~nmn~nevian~a~e~lg~~~g~~~~vhpnd~Vh~gqSsnDv~~TA~~l~~~~~~~ 189 (495)
T 4hgv_A 110 QEVIDGKLDEHFPLVVWQTGSGTQSNMNANEVVSNRAIELLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAERVI 189 (495)
T ss_dssp HHHHTTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTTTCSCCCCCCCTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCchhhccchhhhhhccccccCcchhHHHHHHHHHHcCcccCCCCCCCHHHhccCCCChhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888876 999999999999999999999999987777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCC
Q 011379 191 SRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLN 270 (487)
Q Consensus 191 ~~l~~~L~~L~~~L~~~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~ 270 (487)
+.|.+.|..|+++|.+||++|+|++|+||||+|||+|+||||||++|+++|.|+++||+++++++..+++||||+|||.+
T Consensus 190 ~~L~~~L~~L~~~L~~kA~~~~~~~~~GRTHlQ~A~P~TlG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGgtAvGtg~~ 269 (495)
T 4hgv_A 190 HDLLPALKHLHKALEEKVKAFDHIIKIGRTHTQDATPLTLGQEFSGYAAQVASSIKRIEMTLPGLCELAQGGTAVGTGLN 269 (495)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTTSSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeeecccCCCCceeecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCCCC
Q 011379 271 TKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPG 350 (487)
Q Consensus 271 ~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~~G 350 (487)
++++|+..+.+++++.+||++.+.+|+++|+++||++++++++|+.++++|+|||+|||+|+|+|++||+|+.+|++++|
T Consensus 270 ~~~~~~~~v~~~la~~~gl~f~~a~n~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~S~~~~g~~Ei~~p~~q~G 349 (495)
T 4hgv_A 270 APVGFAEKVAEEIAAITGIGFTSAPNKFEALAAHDSMVFSHGAINATAAALFKIANDIRFLGSGPRSGLGELSLPENEPG 349 (495)
T ss_dssp SCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCC
T ss_pred CchhHHHHHHHHHHHHhCCCccccCCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEEecCcCCcc
Confidence 99999999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhhHHHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHH
Q 011379 351 SSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRER 430 (487)
Q Consensus 351 SSiMP~K~NP~~~E~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~er 430 (487)
||||||||||+.+|.++++|++|+|++++++++...+++|+|.+.|.+.|+++++++++.+++..++.+|++||+||+++
T Consensus 350 SSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~~~~e~n~~~~~~~~~ll~s~~~l~~~~~~~~~~~i~gl~vn~er 429 (495)
T 4hgv_A 350 SSIMPGKVNPTQCEALTQVCVQVFGNHAALTFAGSQGHFELNVYNPLMAYNFLQSVQLLADAAISFTDNCVVGIEAREDN 429 (495)
T ss_dssp C-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHH
T ss_pred cccCccccChHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCEECHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh----------hhcHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 011379 431 ISKLLHE----------KIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 486 (487)
Q Consensus 431 m~~~l~~----------~ig~~~A~~ia~~a~~~g~~~re~~~~~~~l~~eel~~~ldP~~~~g~~ 486 (487)
|+++++. ++||+.|++++++|+++|++|+|++.+.+.||++||+++|||++|+||.
T Consensus 430 m~~~l~~s~~lvtaL~~~iGy~~A~~iak~A~~~g~~lre~~~~~~~ls~eeld~lldP~~~~gpA 495 (495)
T 4hgv_A 430 IKAALDRSLMLVTALAPKIGYDNAAKIAKTAHKNGTTLREEAVGGGYVTDEEFDAVVRPETMIGPA 495 (495)
T ss_dssp HHHHHHHCSGGGGGTHHHHCHHHHHHHHHHHHHHTCCHHHHHHTTTSSCHHHHHHHCCGGGSSSCC
T ss_pred HHHHHhcChhHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHhCCHHHhcCCC
Confidence 9999987 7899999999999999999999999999999999999999999999983
No 4
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=100.00 E-value=3.5e-118 Score=944.28 Aligned_cols=444 Identities=40% Similarity=0.634 Sum_probs=418.9
Q ss_pred ccccccCCCCccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Q 011379 37 FREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVA 115 (487)
Q Consensus 37 ~r~e~d~~g~~~~p~~~~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~~v~ 115 (487)
+|+|+|++|+++||.|+|||+||+|+++||+|||...+.++++|++|+.||+|+|++|+++| ||++++++|.++|++|.
T Consensus 23 ~r~e~d~~g~~~vp~~~~yG~qt~Ra~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~~~G~l~~~~a~aI~~a~~ei~ 102 (478)
T 3ocf_A 23 TRREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLPEPKYAAIVAACDDII 102 (478)
T ss_dssp CEEEEETTEEEEECTTCSSCHHHHHHHHHCCCSSCBGGGSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred cccccccCCCccCCcccccCHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999997333348999999999999999999999 99999999999999999
Q ss_pred ccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-cccccccCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 011379 116 EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 194 (487)
Q Consensus 116 ~~~~~~~f~~~~~~~~~~~~~~~~~~evi~~~~~e~lg~~~g~~~-iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~l~ 194 (487)
+|+++++||+++||+|+||++|||+||||+++++|++|++.|+|. +|||||||+||||||++||+++|++++.+ ..|.
T Consensus 103 ~g~~~~~f~~~~~q~g~gt~~nmnvnevia~~a~e~~G~~~G~~~~vHpndhVn~g~SsNDv~~Ta~~L~~~~~l-~~L~ 181 (478)
T 3ocf_A 103 DGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQ-NQVQ 181 (478)
T ss_dssp TTTTGGGCCCBTTCSSTTHHHHHHHHHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHTH-HHHH
T ss_pred cCccccCCCcchhhccCCccccchHHHHHHHHHHHHhchhcCCCCccCCCCCCCCCCChhhHHHHHHHHHHHHHH-HHHH
Confidence 999999999999999999999999999999999999998888875 99999999999999999999999998765 7999
Q ss_pred HHHHHHHHHHHHHHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCCCC
Q 011379 195 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 274 (487)
Q Consensus 195 ~~L~~L~~~L~~~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~~~ 274 (487)
+.|..|+++|.+||++|+|++||||||+|||+|+||||||++|+++|.|+++||.+++++++.+||||||||||++++++
T Consensus 182 ~~L~~L~~~L~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtAvGTg~~~~~~ 261 (478)
T 3ocf_A 182 TALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIGTRINASHA 261 (478)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHGGGEECTTC-----------C
T ss_pred HHHHHHHHHHHHHHHHccCcEeecccccccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCeeeCCCcCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCCCCCCCC
Q 011379 275 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIM 354 (487)
Q Consensus 275 ~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~~GSSiM 354 (487)
|+..+.++++++|||++++.+|++|++++||++++++++|+.++++|+|||+|||+|+||||+|||||.+|+.++|||||
T Consensus 262 ~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~q~GSSiM 341 (478)
T 3ocf_A 262 YAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLPAVQPGSSIM 341 (478)
T ss_dssp HHHHHHHHHHHHHTSCCEECSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCCEECCCCSCCBTTB
T ss_pred HHHHHHHHHHHhcCCCCccCCChhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeEEECCCCCCcCCCC
Confidence 99999999999999998789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhHHHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHH
Q 011379 355 PGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434 (487)
Q Consensus 355 P~K~NP~~~E~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~~ 434 (487)
||||||++||.++++|++|+|+++++++++.+++||+|+++|++.++++++++++.+++..|+..|++||+||++||+++
T Consensus 342 P~K~NPv~~E~i~~~a~~V~G~~~~i~~a~~~g~leln~~~p~i~~~l~~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~ 421 (478)
T 3ocf_A 342 PGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAG 421 (478)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred CcccCcHHHHHHHHHHHHHHhHHHHHHHHHhcCcchhcccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCEECHHHHHHH
Confidence 99999999999999999999999999998999999999999999999999999999999999989999999999999999
Q ss_pred HHh----------hhcHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccc
Q 011379 435 LHE----------KIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 482 (487)
Q Consensus 435 l~~----------~ig~~~A~~ia~~a~~~g~~~re~~~~~~~l~~eel~~~ldP~~~ 482 (487)
++. ++||+.|+++|++|+++|++|+|++.+.+. |++||+++|||++|
T Consensus 422 l~~s~~lvtaLa~~igy~~a~~ia~~A~~~g~~l~e~~~~~~~-s~eel~~~ldp~~m 478 (478)
T 3ocf_A 422 AEESISLATALVPVVGYARAAEIAKQALASGQTVMEVAISKGL-DASALTIMLDPLRM 478 (478)
T ss_dssp HHTCGGGGGGGHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTC-CCHHHHHHTCSCC-
T ss_pred HHhCccHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCC-CHHHHHHhcCcccC
Confidence 987 789999999999999999999999999988 99999999999875
No 5
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=100.00 E-value=2.1e-117 Score=938.84 Aligned_cols=447 Identities=42% Similarity=0.702 Sum_probs=434.1
Q ss_pred cccccccCCCCccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHH
Q 011379 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEV 114 (487)
Q Consensus 36 ~~r~e~d~~g~~~~p~~~~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~~v 114 (487)
.+|+|+|++|+++||.|+|||+||+|+++||+||+. ++|+++|++|+.||+|+|++|.++| ||++++++|.++|++|
T Consensus 4 ~~r~e~d~~g~~~vp~~~~yg~qt~ra~~nf~i~~~--~~~~~~i~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a~~~i 81 (468)
T 3r6q_A 4 DVRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGY--RIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEV 81 (468)
T ss_dssp -CEEEEETTEEEEECTTCCCCHHHHHHHHHCCSSCC--CCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCccccCCCccCCcccccCHHHHHHHHccccCCC--CCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999987 7999999999999999999999999 9999999999999999
Q ss_pred HccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-cccccccCCCCChhhHHHHHHHHHHHHHHHHHH
Q 011379 115 AEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 193 (487)
Q Consensus 115 ~~~~~~~~f~~~~~~~~~~~~~~~~~~evi~~~~~e~lg~~~g~~~-iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~l 193 (487)
.+++++++||++++|+|+||++|||+||||++++.|++|++.|+|. +|||||||+||||||++||+++|++++.+ ..|
T Consensus 82 ~~~~~~~~f~~~~~~~g~gt~~nmnvnevia~~~~e~~G~~~g~y~~vHpndhVn~g~SsnDv~~Ta~~L~~r~~l-~~l 160 (468)
T 3r6q_A 82 IEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLL-NQL 160 (468)
T ss_dssp HTTTTGGGCCSCSSCSSTTHHHHHHHHHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHHH-HHH
T ss_pred HhCccccCCCccHHhccccccccccHHHHHHHHHHHHhccccCCcCccCCccCCCCCCChHhHHHHHHHHHHHHHH-HHH
Confidence 9998999999999999999999999999999999999998888864 99999999999999999999999998765 699
Q ss_pred HHHHHHHHHHHHHHHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCCC
Q 011379 194 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 273 (487)
Q Consensus 194 ~~~L~~L~~~L~~~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~~ 273 (487)
.+.|..|+++|.+||++|+|++||||||+|||||+||||||++|+++|.|+++||.+++++++.+||||||+||++++++
T Consensus 161 ~~~L~~L~~~L~~~A~~~~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~~ 240 (468)
T 3r6q_A 161 IETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADP 240 (468)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTTSSCTTCCH
T ss_pred HHHHHHHHHHHHHHHHHccCcEEecCcCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeecCCCCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHcCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCCCCCCC
Q 011379 274 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSI 353 (487)
Q Consensus 274 ~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~~GSSi 353 (487)
+|...+.++++++|||+.++.+|++||+++||++++++++|+.++++|+|||+||++|+|+||+|||||.+|++++||||
T Consensus 241 ~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~Kia~DlrllsS~pr~g~gei~lp~~~~GSSi 320 (468)
T 3r6q_A 241 EYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSI 320 (468)
T ss_dssp HHHHHHHHHHHHHHCSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSCCCEECCCCSCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeEEECCCCCCCCCC
Confidence 99999999999999999878899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhhHHHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHH
Q 011379 354 MPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 433 (487)
Q Consensus 354 MP~K~NP~~~E~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~ 433 (487)
|||||||+.+|.++++|++|+|++++++++..+++||+|+++|++.+++++++.++.+++..|..+|++||+||++||++
T Consensus 321 MP~K~NP~~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~erm~~ 400 (468)
T 3r6q_A 321 MPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKE 400 (468)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHH
Confidence 99999999999999999999999999998888999999999999999999999999999999977999999999999999
Q ss_pred HHHh----------hhcHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCC
Q 011379 434 LLHE----------KIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 485 (487)
Q Consensus 434 ~l~~----------~ig~~~A~~ia~~a~~~g~~~re~~~~~~~l~~eel~~~ldP~~~~g~ 485 (487)
|++. ++||+.|++++++|.++|++|+|++.+.+.||++||+++|||++|++|
T Consensus 401 ~l~~s~~l~t~La~~lgy~~a~~ia~~a~~~g~~l~e~~~~~~~ls~eel~~~ldp~~~~~~ 462 (468)
T 3r6q_A 401 YVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHP 462 (468)
T ss_dssp HHHTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHTSSCHHHHHHHSCHHHHTSC
T ss_pred HHHcCCchHHhcchhhHHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHcCHHHhcCC
Confidence 9987 789999999999999999999999999999999999999999999997
No 6
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=100.00 E-value=1e-115 Score=928.99 Aligned_cols=445 Identities=52% Similarity=0.813 Sum_probs=420.4
Q ss_pred cccccccccCCCCccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Q 011379 34 STSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQ 112 (487)
Q Consensus 34 ~~~~r~e~d~~g~~~~p~~~~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~ 112 (487)
+..+|+|+|++|+++||.++|||+||+|+++||++|++ ++|+++|++|+.||+|+|++|.++| ||++++++|.++|+
T Consensus 29 ~~~~r~e~d~~g~~~vp~~~~~G~~t~r~~~~F~is~~--~~~~~~I~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a~~ 106 (495)
T 4adm_A 29 SANYRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGR--GLERTQIRALGLLKGACAQVNSDLGLLAPEKADAIIAAAA 106 (495)
T ss_dssp --CEEEEEETTEEEEEETTCSCCHHHHHHHHHCCSSSC--BCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred hcccCCccCcCCCccCChhhhcCchhHHHHHhcCCCCC--CCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45589999999999999999999999999999999997 7999999999999999999999999 99999999999999
Q ss_pred HHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHH
Q 011379 113 EVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 192 (487)
Q Consensus 113 ~v~~~~~~~~f~~~~~~~~~~~~~~~~~~evi~~~~~e~lg~~~g~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~ 192 (487)
++.+++++++||++++|+|+||++|||+|+||.+++ ++| |+| +|||||||+||||||++||+++|++++.+.+.
T Consensus 107 ei~~~~~~~~f~~~~~q~g~gt~~nmnvnevia~ra--~lG---G~~-vH~~dhVn~g~SsNDv~~Ta~~L~lr~~l~~~ 180 (495)
T 4adm_A 107 EIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIA--AKG---GVT-LHPNDDVNMSQSSNDTFPTATHIAATEAAVAH 180 (495)
T ss_dssp HHHTTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHH--HHT---TCC-CCTTTTTTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCcccCCCCcchhhccccccccccHHHHHHHHH--HhC---CCc-cCcccccCCCCChhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999976 677 788 99999999999999999999999998775457
Q ss_pred HHHHHHHHHHHHHHHHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCC
Q 011379 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 272 (487)
Q Consensus 193 l~~~L~~L~~~L~~~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~ 272 (487)
|.+.|..|+++|.+||++|+|++||||||+|||||+||||||++|+++|.|+++||.+++++++.+||||||+||+++++
T Consensus 181 l~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~PiT~G~~~~~~a~~l~rd~~RL~~~~~~l~~~~LGgtAvGT~~~~~ 260 (495)
T 4adm_A 181 LIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAP 260 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHccCCeeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeecCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHcCC-CCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCCCCC
Q 011379 273 KGFDVKIASAVAEETSL-PFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGS 351 (487)
Q Consensus 273 ~~~~~~v~~~la~~LGl-~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~~GS 351 (487)
++|+..+.++++++||| +..+.+|++||+++||++++++++|+.++++|+|||+||++|+||||+|||||.+|+.++||
T Consensus 261 ~~~~~~v~~~la~~lG~~~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~e~gei~lp~~q~GS 340 (495)
T 4adm_A 261 DDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLPDLQPGS 340 (495)
T ss_dssp TTHHHHHHHHHHHHHCCTTCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSTTSCCCEECCCC----
T ss_pred hhHHHHHHHHHHHHhCCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEECCCCCCCC
Confidence 99999999999999999 67789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChhhhHHHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHH
Q 011379 352 SIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERI 431 (487)
Q Consensus 352 SiMP~K~NP~~~E~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm 431 (487)
|||||||||+.+|.++++|++|+|+++++++++.+++||+|+++|++.++++++++++.+++..|+.+|++||+||++||
T Consensus 341 SiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm 420 (495)
T 4adm_A 341 SIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHL 420 (495)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHcChHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHH
Confidence 99999999999999999999999999999998899999999999999999999999999999999889999999999999
Q ss_pred HHHHHh----------hhcHHHHHHHHHHHHHcCCCHHHHHHHcCC----CCHHHHhhccCcccccCCC
Q 011379 432 SKLLHE----------KIGYDNAAAVAKKAHKEGTTLKDAALKLGV----LNSEEFDNLVVPEKMIGPS 486 (487)
Q Consensus 432 ~~~l~~----------~ig~~~A~~ia~~a~~~g~~~re~~~~~~~----l~~eel~~~ldP~~~~g~~ 486 (487)
++|++. ++||+.|++++++|+++|++|+|++.+.+. |+++||+++|||++|+||.
T Consensus 421 ~~~l~~s~~l~t~La~~igy~~a~~ia~~a~~~g~~l~e~~~~~~~~~~~ls~eel~~~ldp~~~~~~~ 489 (495)
T 4adm_A 421 RRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLIGDRLSIEDLDRRLDVLAMAKAE 489 (495)
T ss_dssp HHHHHHCGGGGGGGHHHHCHHHHHHHHHHHHHHTCCHHHHHHHTTCCBTTBCHHHHHHHTCHHHHTTCC
T ss_pred HHHHhccccHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHhCcccccCCCHHHHHHHcCHHHhcCCc
Confidence 999987 789999999999999999999999999876 9999999999999999984
No 7
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=100.00 E-value=5.1e-115 Score=924.03 Aligned_cols=449 Identities=70% Similarity=1.044 Sum_probs=426.4
Q ss_pred cccccccCCCCccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHH
Q 011379 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEV 114 (487)
Q Consensus 36 ~~r~e~d~~g~~~~p~~~~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~~v 114 (487)
.+|+|+|++|+++||.++|||+||+|+++||++|+..+++|+++|++|++||+|+|.+|+++| ||++++++|.++|++|
T Consensus 27 ~~r~e~d~~g~~~vp~~~~~g~~t~r~~~~f~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~Gil~~~~a~aI~~a~~ei 106 (488)
T 1yfm_A 27 SFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEV 106 (488)
T ss_dssp CEEEECSSSCCEEEESSCCCCHHHHHHHTTCCTTGGGGBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccCcccccCCCcCCCccchhchHHHHHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999986447899999999999999999999999 9999999999999999
Q ss_pred HccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCC-CcccccccccCCCCChhhHHHHHHHHHHHHHHHH-H
Q 011379 115 AEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNS-R 192 (487)
Q Consensus 115 ~~~~~~~~f~~~~~~~~~~~~~~~~~~evi~~~~~e~lg~~~g-~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~-~ 192 (487)
.++++.++||++++|+|++|++|||+|+||+++++|++|++.| ++ +|||||||+||||||++||+++|++++. +. .
T Consensus 107 ~~~~~~~~f~~~~~q~g~~t~~nmn~~evia~~a~e~lG~~~g~~~-vHp~d~Vn~g~SsNDv~~Ta~~L~lr~~-l~~~ 184 (488)
T 1yfm_A 107 ASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIGSKQ-VHPNNHCNQSQSSNDTFPTVMHIAASLQ-IQNE 184 (488)
T ss_dssp HHTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHC----------CCCCCCCTTTCCHHHHHHHHHHHHHHHH-HHTT
T ss_pred HhcccccCCCcchhhccccccccccHHHHHHHHHHHHhCccccCCc-cCcccCcCCCCChhhHHHHHHHHHHHHH-HHHH
Confidence 9998889999999999999999999999999999999997788 77 9999999999999999999999998766 45 8
Q ss_pred HHHHHHHHHHHHHHHHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCC
Q 011379 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 272 (487)
Q Consensus 193 l~~~L~~L~~~L~~~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~ 272 (487)
|.+.|..|+++|.+||++|+|++||||||+|||+|+||||||++|+++|.|+++||++++++++.+||||||+||+++++
T Consensus 185 l~~~L~~L~~~L~~~A~e~~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~ 264 (488)
T 1yfm_A 185 LIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTK 264 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCcEeeceecCccceEeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHcCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCCCCCC
Q 011379 273 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSS 352 (487)
Q Consensus 273 ~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~~GSS 352 (487)
++|+.++.+++|+.|||++++.+|++|++++||++++++++|+.++++|+|||+||++|+||||+|||||.+|++++|||
T Consensus 265 ~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsS~pr~g~gei~lp~~~~GSS 344 (488)
T 1yfm_A 265 PGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSS 344 (488)
T ss_dssp TTHHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCCT
T ss_pred hhHHHHHHHHHHHHhCCCCccCccHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCceeEECCCCCCcCC
Confidence 99999999999999999987899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhhHHHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHH
Q 011379 353 IMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 432 (487)
Q Consensus 353 iMP~K~NP~~~E~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~ 432 (487)
||||||||+.+|.++++|++|+|++.+++.+...+++|+|+++|++.+++++++.++.+++..|..+|++||+||+++|+
T Consensus 345 iMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~p~~~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~erm~ 424 (488)
T 1yfm_A 345 IMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIH 424 (488)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHH
T ss_pred CcccccCcHHHHHHHHHHHHHHhHHHHHHHHHhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHH
Confidence 99999999999999999999999999999988899999999999999999999999999999998889999999999999
Q ss_pred HHHHh----------hhcHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 011379 433 KLLHE----------KIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 486 (487)
Q Consensus 433 ~~l~~----------~ig~~~A~~ia~~a~~~g~~~re~~~~~~~l~~eel~~~ldP~~~~g~~ 486 (487)
++++. ++||+.+++++++|+++|++|+|++.+.+.+|++|++++|||+.|+||+
T Consensus 425 ~~l~~s~~l~t~La~~lg~~~a~~i~~~a~~~g~~l~e~~~~~~~l~~eel~~~ldp~~~~~~~ 488 (488)
T 1yfm_A 425 ELLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHMLGPK 488 (488)
T ss_dssp HHHHHCSGGGTTTGGGTCHHHHHHHHHHHHHHTCCHHHHHHHTTSCCHHHHHHHCCGGGCC---
T ss_pred HHHccCchHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHHHHHhcCHHHhcCCC
Confidence 99987 7899999999999999999999999999999999999999999999974
No 8
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=100.00 E-value=1.1e-112 Score=904.69 Aligned_cols=447 Identities=61% Similarity=0.951 Sum_probs=430.4
Q ss_pred ccccccCCCCccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Q 011379 37 FREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVA 115 (487)
Q Consensus 37 ~r~e~d~~g~~~~p~~~~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~~v~ 115 (487)
+|+|+|++|+++||.++|||+||+|+++||++|+. ++|+++|++|++||+|+|.+|+++| ||++++++|.++|++|.
T Consensus 4 ~r~e~d~~g~~~vp~~~~~g~~t~r~~~~f~~s~~--~~~~~~i~a~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~ 81 (467)
T 1fur_A 4 VRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTE--KMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVL 81 (467)
T ss_dssp CEEEEETTEEEEECTTCCCCHHHHHHHHHCCCSSC--BCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred cCccccCCCCccCCcccccchhhHHHHHhccCCCc--cCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999986 6799999999999999999999999 99999999999999999
Q ss_pred ccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-cccccccCCCCChhhHHHHHHHHHHHHHHHHH-H
Q 011379 116 EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR-L 193 (487)
Q Consensus 116 ~~~~~~~f~~~~~~~~~~~~~~~~~~evi~~~~~e~lg~~~g~~~-iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~-l 193 (487)
+++.+++|+++++|+|+||++|||+|+||+++++|++|++.|+|. +|||||||+||||||++||+++|++++.+ .. |
T Consensus 82 ~~~~~~~f~~~~~q~g~~~~~~mn~~~via~~a~e~~G~~~g~~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l-~~~l 160 (467)
T 1fur_A 82 AGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLAL-RKQL 160 (467)
T ss_dssp TTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCSSTTCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHH-HHTH
T ss_pred hccccccccchhhhccccccccccHHHHHHHHHHHHhCcccccccccCchhhcccCCChhhHHHHHHHHHHHHHH-HHHH
Confidence 988888999999999999999999999999999999998888765 99999999999999999999999997765 56 9
Q ss_pred HHHHHHHHHHHHHHHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCCC
Q 011379 194 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 273 (487)
Q Consensus 194 ~~~L~~L~~~L~~~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~~ 273 (487)
.+.|..|+++|.+||++|+|++||||||+||||||||||||++|+++|.|+++||.+++++++.+||||||+||++++++
T Consensus 161 ~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGgtAvGT~~~~~~ 240 (467)
T 1fur_A 161 IPQLKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHP 240 (467)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSCT
T ss_pred HHHHHHHHHHHHHHHHHhcCcEeeccccCccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCcchhcCCccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHcCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCCCCCCC
Q 011379 274 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSI 353 (487)
Q Consensus 274 ~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~~GSSi 353 (487)
+|+..+.+++|+.|||+..+.+|++||+++||++++++++|+.++++|+|||+||++|+|+||+|||||.+|++++||||
T Consensus 241 ~~~~~v~~~la~~LGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~lp~~~~GSSi 320 (467)
T 1fur_A 241 EYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSI 320 (467)
T ss_dssp THHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCSEECCCCSCCCTT
T ss_pred hHHHHHHHHHHHHhCCCCccCCCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeEECCCCCCCCCC
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhhHHHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHH
Q 011379 354 MPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 433 (487)
Q Consensus 354 MP~K~NP~~~E~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~ 433 (487)
|||||||+.+|.++++|++|+|++.+++.+...+++|+|.+.|.+.+++++++.++.+++..+..+|++||+||+++|++
T Consensus 321 MP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~ 400 (467)
T 1fur_A 321 MPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQ 400 (467)
T ss_dssp CTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCeeCHHHHHH
Confidence 99999999999999999999999999998888899999999999999999999999999999988899999999999999
Q ss_pred HHHh----------hhcHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 011379 434 LLHE----------KIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 486 (487)
Q Consensus 434 ~l~~----------~ig~~~A~~ia~~a~~~g~~~re~~~~~~~l~~eel~~~ldP~~~~g~~ 486 (487)
+++. ++||+.+++++++|+++|++|+|++.+.+.+++++++++|||+.|+|++
T Consensus 401 ~l~~~~~l~t~La~~lg~~~a~~~~~~a~~~g~~l~e~~~~~~~l~~~e~~~~ldp~~~~~~~ 463 (467)
T 1fur_A 401 LLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVGSM 463 (467)
T ss_dssp HHHHCSTTHHHHHTTSCHHHHHHHHHHHHHHTCCHHHHHHHTTSSCHHHHHHHCCGGGC----
T ss_pred HHHhCccHHHHhHhhccHHHHHHHHHHHHHcCCCHHHHHHhcCCCCHHHHHHhcCHHHHhCcc
Confidence 9987 7899999999999999999999999999999999999999999999973
No 9
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=2.4e-111 Score=897.27 Aligned_cols=447 Identities=39% Similarity=0.648 Sum_probs=426.5
Q ss_pred cccccccCCCCccccccCccChHhHHHhhcCccCCCCCCC--CHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Q 011379 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERM--PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQ 112 (487)
Q Consensus 36 ~~r~e~d~~g~~~~p~~~~~g~~t~rai~~f~~~~~~~~~--~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~ 112 (487)
.+|+|+|++|+++||.|+|||+||+|+++||++|+. ++ |+++|++|++||+|+|++|+++| ||++++++|.++|+
T Consensus 4 ~~r~e~d~~g~~~vp~~~~~g~~t~r~~~~f~~s~~--~~~~~~~~i~~~~~ve~A~a~a~~~~Gii~~~~a~~I~~a~~ 81 (478)
T 1jsw_A 4 NIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNN--KISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACD 81 (478)
T ss_dssp SEEEEECSSCEEEEESSCCCCHHHHHHHHHCCSCSC--CSCCTTSHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CcCcccccCCCcCCCCccccchHHHHHHHhCCCcCc--cccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 389999999999999999999999999999999976 67 89999999999999999999999 99999999999999
Q ss_pred HHH-ccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCC--cccccccccCCCCChhhHHHHHHHHHHHHHH
Q 011379 113 EVA-EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE--KIVHPNDHVNRSQSSNDTFPTVMHIAAAMET 189 (487)
Q Consensus 113 ~v~-~~~~~~~f~~~~~~~~~~~~~~~~~~evi~~~~~e~lg~~~g~--~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~ 189 (487)
+|. +++..++||+++||+|++|++|||+|+||+++++|++|++.|+ + +|||||||+||||||++||+++|++++.+
T Consensus 82 ~i~~~~~~~~~f~v~~~~~g~~~~~~mnv~~vIa~~~~e~~g~~~g~~~~-lHpnd~Vn~g~SsnDv~~Ta~~L~lr~~l 160 (478)
T 1jsw_A 82 EVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQY-LNPNDHVNKCQSTNDAYPTGFRIAVYSSL 160 (478)
T ss_dssp HHSTTTCSTTCCCCCSSCCSTTHHHHHHHHHHHHHHHHHTTTSCCTTSCS-SCCCCCCSCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchhccCCccchhhccCcccccccHHHHHHHHHHHHcCcccccccc-ccccccccCCCChhhHHHHHHHHHHHHHH
Confidence 999 8888899999999999999999999999999999999977786 5 99999999999999999999999998765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCC
Q 011379 190 NSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGL 269 (487)
Q Consensus 190 ~~~l~~~L~~L~~~L~~~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~ 269 (487)
..|.+.|..|+++|.+||++|+|++||||||+||||||||||||++|+++|.|+++||.+++++++.+||||||+||++
T Consensus 161 -~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~~~~~~lGg~AvGT~~ 239 (478)
T 1jsw_A 161 -IKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGL 239 (478)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHGGGCEEECCGGGSCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSCCSSSSCS
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCCeeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCCc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHcCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCCC
Q 011379 270 NTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEP 349 (487)
Q Consensus 270 ~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~~ 349 (487)
+++++|+..+.+++++.|||+.++.+|++|++++||+++|++++|+.++++|+|||+||++|+|+||+|||||.+|++++
T Consensus 240 ~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~pr~e~gei~lp~~~~ 319 (478)
T 1jsw_A 240 NTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQA 319 (478)
T ss_dssp SCTTTHHHHHHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSCCCEECCCCSC
T ss_pred cCCcchHHHHHHHHHHHcCCCCCcCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeEECCCCCC
Confidence 99999999999999999999987899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhhhHHHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHH
Q 011379 350 GSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRE 429 (487)
Q Consensus 350 GSSiMP~K~NP~~~E~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~e 429 (487)
|||||||||||+.+|.++++|++|+|++.+++.....+++|+|++.|++.+++++++.++.+++..+..+|++||+||++
T Consensus 320 GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~e~~~~~p~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~e 399 (478)
T 1jsw_A 320 GSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKE 399 (478)
T ss_dssp CCSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHH
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHHhHHHHHHHHHhccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHccCeecHH
Confidence 99999999999999999999999999999998888889999999999989999999999999999997789999999999
Q ss_pred HHHHHHHh----------hhcHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 011379 430 RISKLLHE----------KIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 486 (487)
Q Consensus 430 rm~~~l~~----------~ig~~~A~~ia~~a~~~g~~~re~~~~~~~l~~eel~~~ldP~~~~g~~ 486 (487)
||+++++. ++||+.+++++++|.++|++|+|++.+.+.+++++++++|||++|+|++
T Consensus 400 rm~~~l~~~~~l~t~La~~lg~~~a~~~v~~a~~~g~~l~e~~~~~~~l~~~~~~~~ldp~~~~~~~ 466 (478)
T 1jsw_A 400 VCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPA 466 (478)
T ss_dssp HHHHHHTTCTTCGGGTHHHHCHHHHHHHHHHHHTTCCCHHHHHHHHTSSCSHHHHTSCCC-------
T ss_pred HHHHHHHhCchHHHHHHHhhhHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHHHHHhCCHHHHhCCC
Confidence 99999987 7899999999999999999999999999999999999999999999973
No 10
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=100.00 E-value=2.8e-111 Score=894.27 Aligned_cols=449 Identities=57% Similarity=0.877 Sum_probs=428.7
Q ss_pred ccccccCCCCccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Q 011379 37 FREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVA 115 (487)
Q Consensus 37 ~r~e~d~~g~~~~p~~~~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~~v~ 115 (487)
+|+|+|++|+++||.++|||+||+|+++||++|+.+.++|++++++|++||+|+|.+|+++| ||++++++|.++|++|.
T Consensus 3 ~r~e~d~~g~~~vp~~~~~g~~t~~~~~~f~~s~~~~~~~~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~ 82 (466)
T 1vdk_A 3 YRIERDTMGEVRVPADKYWGAQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAAEEVV 82 (466)
T ss_dssp -CEEEETTEEEECCTTCCCCHHHHHHHHHCCSSTTTCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcCCCcccccchhhHHHHHhccCCCccccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999976222399999999999999999999999 99999999999999999
Q ss_pred ccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCC-CcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 011379 116 EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 194 (487)
Q Consensus 116 ~~~~~~~f~~~~~~~~~~~~~~~~~~evi~~~~~e~lg~~~g-~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~l~ 194 (487)
+++..++|+++++|++++|++|||+|+||+++++|++|++.| ++ +|||||||+||||||++||+++|++++.+.+.|.
T Consensus 83 ~~~~~~~f~~~~~q~~~~~~~~mn~~~via~~a~e~~g~~~g~~~-lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~~l~ 161 (466)
T 1vdk_A 83 QGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKPLGSKY-AHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLY 161 (466)
T ss_dssp TTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCS-SCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hcccccCCCchhhhccccccccccHHHHHHHHHHHHhCccccccc-cccccCcCCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 988888999999999999999999999999999999997788 77 9999999999999999999999998766423899
Q ss_pred HHHHHHHHHHHHHHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCCCC
Q 011379 195 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 274 (487)
Q Consensus 195 ~~L~~L~~~L~~~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~~~ 274 (487)
+.|..|+++|.+||++|+|++||||||+||||||||||||++|+++|.|+++||.+++++++.+||||||+||+++++++
T Consensus 162 ~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~~~ 241 (466)
T 1vdk_A 162 PAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPR 241 (466)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHGGGGEECTTCTTTSSCTTSCTT
T ss_pred HHHHHHHHHHHHHHHHccCCeeeccccCccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCccCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCCCCCCCC
Q 011379 275 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIM 354 (487)
Q Consensus 275 ~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~~GSSiM 354 (487)
|+.++.+++++.|||+.++.+|++|++++||++++++++|+.++++|+|||+||++|+|+||+|||||++|++++|||||
T Consensus 242 ~~~~v~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~lp~~~~GSSiM 321 (466)
T 1vdk_A 242 FGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIPANEPGSSIM 321 (466)
T ss_dssp HHHHHHHHHHHHHSSCCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCSEECCCCSCCSSCC
T ss_pred HHHHHHHHHHHHcCCCCCCCcchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEECCCCCCcCCCC
Confidence 99999999999999998789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhHHHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHH
Q 011379 355 PGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434 (487)
Q Consensus 355 P~K~NP~~~E~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~~ 434 (487)
||||||+.+|.++++|++|+|++.+++.+...+++|+|+++|++.+++++++.++.+++..+..+|++||+||++||+++
T Consensus 322 P~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~ 401 (466)
T 1vdk_A 322 PGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEY 401 (466)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCEEcHHHHHHH
Confidence 99999999999999999999999999998888999999999998899999999999999999878999999999999999
Q ss_pred HHh----------hhcHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 011379 435 LHE----------KIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 486 (487)
Q Consensus 435 l~~----------~ig~~~A~~ia~~a~~~g~~~re~~~~~~~l~~eel~~~ldP~~~~g~~ 486 (487)
++. ++||+.+++++++|.++|++|+|++.+.+.+++++++++|||++|+||+
T Consensus 402 l~~~~~l~t~La~~lg~~~a~~~v~~a~~~g~~l~e~~~~~~~l~~~~~~~~ldp~~~~~~~ 463 (466)
T 1vdk_A 402 LQKNPMLATALNKAIGYDKAAEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKPH 463 (466)
T ss_dssp HTTCGGGGHHHHHHHCSHHHHTTTTTSCC--CCHHHHHHHTSSSCHHHHHHHCCHHHHHCCC
T ss_pred HHhcchHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHhcCCCCHHHHHHHcCHHHhcCCC
Confidence 987 6799999999999999999999999999999999999999999999985
No 11
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=100.00 E-value=2.7e-83 Score=678.61 Aligned_cols=399 Identities=22% Similarity=0.261 Sum_probs=350.2
Q ss_pred cccCccCh-HhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccc
Q 011379 50 PSDKLWGA-QTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVV 127 (487)
Q Consensus 50 p~~~~~g~-~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~~v~~~~~~~~f~~~~ 127 (487)
|.+ +|+. +.++.+ |+ +++++++|++||+|+|.+|.++| ||++++++|.++|++ ++|+++.
T Consensus 5 ~~~-ry~~~~~~~~i--~s--------~~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~-------~~f~~~~ 66 (450)
T 1re5_A 5 LFD-AYFTAPAMREI--FS--------DRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQA-------ERYDTGA 66 (450)
T ss_dssp TTH-HHHSCHHHHHH--TS--------HHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHCCG-------GGSCHHH
T ss_pred chh-hccCCHHHHHH--cC--------cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhc-------CCCCHHH
Confidence 566 5555 899999 73 78999999999999999999999 999999999999865 2477887
Q ss_pred cccCcccccccchHHHHHHH--HHHHhCccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011379 128 WQTGSGTQSNMNANEVIANR--AAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLH 205 (487)
Q Consensus 128 ~~~~~~~~~~~~~~evi~~~--~~e~lg~~~g~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~l~~~L~~L~~~L~ 205 (487)
++++.++ +.|+||+++ +.|++|... . .||+|||+||||||++||+++|++++.+ ..|.+.|..|+++|.
T Consensus 67 ~~~~~~~----~~~dV~a~~~~l~e~~g~~~--~--~~~~~vh~g~SsnD~~~Ta~~l~lr~~l-~~l~~~l~~L~~~L~ 137 (450)
T 1re5_A 67 LANAIAT----AGNSAIPLVKALGKVIATGV--P--EAERYVHLGATSQDAMDTGLVLQLRDAL-DLIEADLGKLADTLS 137 (450)
T ss_dssp HHHHHHH----HSSSHHHHHHHHHHHHHHHC--G--GGGGGTTTTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHhc----cCccHHHHHHHHHHHhCCCC--C--cccccccCCCChhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 7776554 467777764 458887310 0 1578888999999999999999987765 699999999999999
Q ss_pred HHHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCCCCchHHHHHHHHH
Q 011379 206 SKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAE 285 (487)
Q Consensus 206 ~~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~ 285 (487)
+||++|+|++||||||+||||||||||||++|+++|.|+++||.+++++++.+|||| |+||+++++++ +..+.+++++
T Consensus 138 ~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGG-AvGt~~~~~~~-~~~~~~~la~ 215 (450)
T 1re5_A 138 QQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGG-ASGSLAALGSK-AMPVAEALAE 215 (450)
T ss_dssp HHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCC-TTSSCGGGGGG-HHHHHHHHHH
T ss_pred HHHHHccCCeeeccccCccCccCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc-hhcCCcccCcc-hHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 89999999987 8899999999
Q ss_pred HcCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCC--CCCCCCCCCCCCChhhh
Q 011379 286 ETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQC 363 (487)
Q Consensus 286 ~LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~--~~~GSSiMP~K~NP~~~ 363 (487)
.|||+.++.+ |+++||++++++++|+.++++|+|||+||++|+ |+|||||.+|. +++|||||||||||+.+
T Consensus 216 ~LG~~~~~~~----~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~---~~e~~El~~p~~~~q~GSSiMP~K~NP~~~ 288 (450)
T 1re5_A 216 QLKLTLPEQP----WHTQRDRLVEFASVLGLVAGSLGKFGRDISLLM---QTEAGEVFEPSAPGKGGSSTMPHKRNPVGA 288 (450)
T ss_dssp HHTCBCCSSC----CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT---STTTCCEECCCCC----------CCCCHHH
T ss_pred HhCcCCCCcc----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCcceeecccccCCCccccCCCCcCCHHH
Confidence 9999986554 579999999999999999999999999999999 68999999996 69999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHHHHh------
Q 011379 364 EALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE------ 437 (487)
Q Consensus 364 E~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~~l~~------ 437 (487)
|.++++|++|+|++.+++.+. ..++|+|.+.|.+.|++++++..+.+++..++.+|++||+||+++|+++++.
T Consensus 289 E~i~~~a~~v~g~~~~~~~~~-~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~~~ 367 (450)
T 1re5_A 289 AVLIGAATRVPGLLSTLFAAM-PQEHERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVL 367 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-CCCTTBCSSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTSTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhC-hhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhCcChhH
Confidence 999999999999999998654 5699999999999999999999999999999999999999999999999974
Q ss_pred ----------hhcHHHHH----HHHHHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 011379 438 ----------KIGYDNAA----AVAKKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 485 (487)
Q Consensus 438 ----------~ig~~~A~----~ia~~a~~~g~~~re~~~~~----~~l~~eel~~~ldP~~~~g~ 485 (487)
.+||+.|| ++++++.++|.+|+|++.++ +.+++++++++|||++|+|+
T Consensus 368 Ae~l~~~L~~gig~~~A~~~v~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~ 433 (450)
T 1re5_A 368 AEAVSIVLAQRLGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAHYLGQ 433 (450)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHTCHHHHHHSCHHHHHHHTCGGGCCTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHhChhhccCCCHHHHHHhcCHHHHhhh
Confidence 48977777 67778888999999999887 78999999999999999997
No 12
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=100.00 E-value=1.4e-82 Score=672.92 Aligned_cols=396 Identities=19% Similarity=0.223 Sum_probs=345.4
Q ss_pred cccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCccccc
Q 011379 50 PSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVW 128 (487)
Q Consensus 50 p~~~~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~~v~~~~~~~~f~~~~~ 128 (487)
|.+.+|+.+.++.+ |+ ++.++++|++||+|+|.+|+++| ||++++++|.++|++ ++|+++.+
T Consensus 7 ~~~~ry~~~~~~~~--~s--------d~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~-------~~~~~~~~ 69 (451)
T 3c8t_A 7 LYGRSFADDKMREL--FS--------AQSFISRCVETEVALARAQARLGIIPEDAAAGITAAART-------FAPEMERL 69 (451)
T ss_dssp CSSCCCSCHHHHHH--TS--------HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH-------CCCCHHHH
T ss_pred ccccccCcHHHHHH--cC--------CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhh-------cCCCHHHH
Confidence 55668888899999 73 78999999999999999999999 999999999999986 34677777
Q ss_pred ccCcccccccchHHHHHHHH--HHHhCccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011379 129 QTGSGTQSNMNANEVIANRA--AEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHS 206 (487)
Q Consensus 129 ~~~~~~~~~~~~~evi~~~~--~e~lg~~~g~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~l~~~L~~L~~~L~~ 206 (487)
+++.++ |.|+||+++. .+++| +.|+| || +||||||++||+++|++++.+ ..|.+.|..|+++|.+
T Consensus 70 ~~~~~~----~~~dVia~~~~l~e~~g-~~g~~-vH------~g~SsnDv~~Ta~~L~lr~~l-~~l~~~l~~L~~~L~~ 136 (451)
T 3c8t_A 70 RDDTEI----VGYPILPLVEQLSAHAG-EAGKY-LH------WGATTQDIMDTATVLQIRDGL-ALISRRIESVRKALAA 136 (451)
T ss_dssp HHHHHH----HSSSHHHHHHHHHHHHG-GGGGG-SS------SSCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHhhc----CCCcHHHHHHHHHHHcc-ccccc-cc------CCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 766554 6678877754 79998 45777 88 699999999999999997765 6999999999999999
Q ss_pred HHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCCCCchHHHHHHHHHH
Q 011379 207 KSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE 286 (487)
Q Consensus 207 ~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~ 286 (487)
||++|+|++||||||+||||||||||||++|+++|.|+++||.+++++++.+|||| |+||++++++ |++.+.+++++.
T Consensus 137 ~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-AvGT~~~~~~-~~~~~~~~~a~~ 214 (451)
T 3c8t_A 137 LARNHRDTPMAGRTHLQHALPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSG-ASGTLASLGT-RGLDVQRELARE 214 (451)
T ss_dssp HHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCBCCCCC-TTSSCGGGTT-CHHHHHHHHHHH
T ss_pred HHHHccCceeecccCCCCceeehHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-hhhcCccccc-ccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 8999999877 899999999999
Q ss_pred cCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCC--CCCCCCCCCCCCChhhhH
Q 011379 287 TSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCE 364 (487)
Q Consensus 287 LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~--~~~GSSiMP~K~NP~~~E 364 (487)
|||+.++.+| +.+||++++++++|+.++++|+|||+||++|+ ++|||||.+|. +++|||||||||||+.+|
T Consensus 215 LGl~~~~~~~----~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~---~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E 287 (451)
T 3c8t_A 215 LNLGVPSITW----HSARDAVAETVQFLALVSGSLGKLAMDISIMM---TTELGEVAEPFVRHRGASSTMPQKQNPVSCE 287 (451)
T ss_dssp HTCBCCSSCC----SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT---STTTCCEECC---------------CCHHHH
T ss_pred hCCCCCCCCC----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccccccccccccCCCCCCCCCCCcCCHHHH
Confidence 9999977765 45999999999999999999999999999999 68999999996 799999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHHHHh-------
Q 011379 365 ALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE------- 437 (487)
Q Consensus 365 ~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~~l~~------- 437 (487)
.++++|++|+|++++++.+ ..+++|+|...|.+.|+++++...+.+.+..++.+|++||+||++||+++++.
T Consensus 288 ~i~~~a~~v~g~~~~~~~~-~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~a 366 (451)
T 3c8t_A 288 LILAGARIVRNHATSMLDA-MIHDFERATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVA 366 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHHHHTTTTTGGGH
T ss_pred HHHHHHHHHHHHHHHHHhc-CchhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhccChHHH
Confidence 9999999999999998764 66799999999998888886666666666666789999999999999999974
Q ss_pred ---------hhcHHHHHHHH----HHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 011379 438 ---------KIGYDNAAAVA----KKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 485 (487)
Q Consensus 438 ---------~ig~~~A~~ia----~~a~~~g~~~re~~~~~----~~l~~eel~~~ldP~~~~g~ 485 (487)
++||++|++++ ++|.++|.+|+|++.++ +.+++++++++|||++|+|+
T Consensus 367 e~l~~~L~~~ig~~~A~~iv~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~ 431 (451)
T 3c8t_A 367 EAVMMALAPHTGRKEAHDIVYLGCRRAVEDKTGLFEVLRTMPEVAKPLGEEALRDLTDPRNYLGS 431 (451)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCHHHHHTTCHHHHHHHCHHHHHHHTCGGGCCTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCHHHHHhcChhhhccCCHHHHHHhCCHHHHhch
Confidence 58999999754 77888999999999887 67899999999999999997
No 13
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=100.00 E-value=2.2e-82 Score=672.30 Aligned_cols=402 Identities=20% Similarity=0.251 Sum_probs=346.6
Q ss_pred cccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCccccc
Q 011379 50 PSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVW 128 (487)
Q Consensus 50 p~~~~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~~v~~~~~~~~f~~~~~ 128 (487)
|.+.+|+...++.+ |+ ++.++++|++||+|+|.+|.++| ||++++++|.++|++|. ++|+++.+
T Consensus 7 ~~~~ry~~~~~~~~--~s--------d~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~-----~~~~~~~~ 71 (454)
T 1q5n_A 7 LYASLFYQRDVTEI--FS--------DRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAI-----DKIDFDAL 71 (454)
T ss_dssp TTHHHHSCHHHHHH--TS--------HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTHH-----HHCCHHHH
T ss_pred ccccccCcHHHHHH--cC--------cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh-----hcCCHHHH
Confidence 44447888889999 73 78999999999999999999999 99999999999999875 23667777
Q ss_pred ccCcccccccchHHHHHHH--HHHHhCccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011379 129 QTGSGTQSNMNANEVIANR--AAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHS 206 (487)
Q Consensus 129 ~~~~~~~~~~~~~evi~~~--~~e~lg~~~g~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~l~~~L~~L~~~L~~ 206 (487)
+++.++ |.|+||+++ +.|++|...| .+++|||+||||||++||+++|++++.+ ..|.+.|..|+++|.+
T Consensus 72 ~~~~~~----~~~dVia~~~~l~e~~g~~~g----~~~~~vH~g~SsnD~~~Ta~~L~~r~~l-~~l~~~l~~L~~~L~~ 142 (454)
T 1q5n_A 72 ATATGL----AGNIAIPFVKQLTAIVKDADE----DAARYVHWGATSQDILDTACILQCRDAL-AIVQNQVQQCYETALS 142 (454)
T ss_dssp HHHHHH----HSSSHHHHHHHHHHHHHTTCT----TGGGGTTTTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHhhc----cCCcHHHHHHHHHHHhccccC----CccccccCCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 766554 667887774 4788852111 1244555899999999999999987765 6999999999999999
Q ss_pred HHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCCCCchHHHHHHHHHH
Q 011379 207 KSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE 286 (487)
Q Consensus 207 ~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~ 286 (487)
||++|+|++||||||+||||||||||||++|+++|.|+++||.+++++++.+|||| |+||+++.++ |++.+.+++++.
T Consensus 143 ~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-AvGT~~~~~~-~~~~~~~~~a~~ 220 (454)
T 1q5n_A 143 QAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGG-AVGSLASLQD-QGSIVVEAYAKQ 220 (454)
T ss_dssp HHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCC-TTSSCGGGTT-CHHHHHHHHHHH
T ss_pred HHHHhcCceeeccccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-HhhcCccccc-ccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 8999999877 899999999999
Q ss_pred cCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCC--CCCCCCCCCCCCChhhhH
Q 011379 287 TSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCE 364 (487)
Q Consensus 287 LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~--~~~GSSiMP~K~NP~~~E 364 (487)
|||+.++.+| +.+||++++++++|+.++++|+|||+||++|+ ++||||+.+|. +++|||||||||||+.+|
T Consensus 221 LG~~~~~~~~----~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~---~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E 293 (454)
T 1q5n_A 221 LKLGQTACTW----HGERDRIVEIASVLGIITGNVGKMARDWSLMM---QTEIAEVFEPTAKGRGGSSTMPHKRNPVAAA 293 (454)
T ss_dssp HTCBCCSSCC----SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT---STTTCCEECCC-------------CCCHHHH
T ss_pred hCcCCCCCCC----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccchhccccccCCCCCccCCCCCCCHHHH
Confidence 9999977765 45999999999999999999999999999999 68999999996 699999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHHHHh-------
Q 011379 365 ALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE------- 437 (487)
Q Consensus 365 ~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~~l~~------- 437 (487)
.++++|++|+|++++++. +..+++|+|...|.+.|+++++...+.+.+..++.+|++||+||++||+++++.
T Consensus 294 ~i~~~a~~v~g~~~~~~~-~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~a 372 (454)
T 1q5n_A 294 SVLAAANRVPALMSSIYQ-SMVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMA 372 (454)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCCCTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHTTTTGGGH
T ss_pred HHHHHHHHHHHHHHHHHH-hccchhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhCcChhHH
Confidence 999999999999999876 466799999999998888887766666666666789999999999999999974
Q ss_pred ---------hhcHHHHHHHH----HHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 011379 438 ---------KIGYDNAAAVA----KKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 485 (487)
Q Consensus 438 ---------~ig~~~A~~ia----~~a~~~g~~~re~~~~~----~~l~~eel~~~ldP~~~~g~ 485 (487)
++||+.||+++ +++.++|.+|+|++.+. +.+++++++++|||++|+|+
T Consensus 373 e~l~~~L~~~ig~~~A~~iv~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~g~ 437 (454)
T 1q5n_A 373 EAVMMALAPHMGRLNAHHVVEAACKTAVAEQKHLKDIISQVDEVKQYFNPSQLDEIFKPESYLGN 437 (454)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTCCHHHHHTTCHHHHTTCCHHHHHHHTCGGGGCTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCHHHHHhcchhhhcCCCHHHHHHhCCHHHHcCc
Confidence 58999999754 77888999999999887 88999999999999999997
No 14
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=100.00 E-value=4.8e-82 Score=665.33 Aligned_cols=387 Identities=20% Similarity=0.228 Sum_probs=345.3
Q ss_pred ccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCc
Q 011379 54 LWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGS 132 (487)
Q Consensus 54 ~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~~v~~~~~~~~f~~~~~~~~~ 132 (487)
+|+.+.++.+ |+ |++++++|++||+|+|.+|.++| ||++++++|.++| +|+++.++++.
T Consensus 3 ry~~~~~~~~--~s--------d~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~----------~~d~~~i~~~~ 62 (429)
T 1c3c_A 3 RYSLSPMKDL--WT--------EEAKYRRWLEVELAVTRAYEELGMIPKGVTERIRNNA----------KIDVELFKKIE 62 (429)
T ss_dssp GGCCTTHHHH--TS--------HHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHC----------CCCHHHHHHHH
T ss_pred CcccHHHHHH--cC--------hHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhC----------CCCHHHHHHHH
Confidence 6777889999 73 78999999999999999999999 9999999999886 35666666655
Q ss_pred ccccccchHHHHHHHH--HHHhCccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011379 133 GTQSNMNANEVIANRA--AEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVE 210 (487)
Q Consensus 133 ~~~~~~~~~evi~~~~--~e~lg~~~g~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~l~~~L~~L~~~L~~~A~~ 210 (487)
++ |.|+||+++. .|++| +.|+| || +||||||++||+++|++++.+ ..|.+.|..|+++|.+||++
T Consensus 63 ~~----~~~dVia~~~~l~e~~g-~~g~~-vH------~g~SsnD~~~Ta~~l~lr~~~-~~l~~~l~~l~~~L~~~A~~ 129 (429)
T 1c3c_A 63 EK----TNHDVVAFVEGIGSMIG-EDSRF-FH------YGLTSSDVLDTANSLALVEAG-KILLESLKEFCDVLWEVANR 129 (429)
T ss_dssp HH----HCCHHHHHHHHHHHHHG-GGGGG-TT------TTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred hc----cCCChHHHHHHHHHHcC-ccccc-cc------CCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 43 5788888754 79998 45777 88 699999999999999998765 69999999999999999999
Q ss_pred cccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCCCCchHHHHHHHHHHcCCC
Q 011379 211 FKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLP 290 (487)
Q Consensus 211 ~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~ 290 (487)
|+|++||||||+||||||||||||++|+++|.|+++||.+++++++.+|||| |+||+++++ ..+.+++++.|||+
T Consensus 130 ~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-AvGt~~~~~----~~~~~~~a~~LGl~ 204 (429)
T 1c3c_A 130 YKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISG-AVGNYANVP----PEVEEKALSYLGLK 204 (429)
T ss_dssp TTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCC-TTSSCSSSC----HHHHHHHHHHTTCE
T ss_pred hcCCeeecCcCCCcCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch-hhcCCccCC----HHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999 899998865 47889999999999
Q ss_pred CccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCC--CCCCCCCCCCCCChhhhHHHHH
Q 011379 291 FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCEALTM 368 (487)
Q Consensus 291 ~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~--~~~GSSiMP~K~NP~~~E~i~~ 368 (487)
.++.+ |++.+||++++++++|+.++++|+|||+||++|+ ++||||+.+|. +++|||||||||||+.+|.+++
T Consensus 205 ~~~~~---d~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~---~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~ 278 (429)
T 1c3c_A 205 PEPVS---TQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQ---RTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTG 278 (429)
T ss_dssp ECSSC---SSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHT---STTTCSEECCCCC-----CCCTTCCCCHHHHHHHH
T ss_pred CCCCC---cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccchhccccccCCCcCCCCCCCCCcHHHHHHHH
Confidence 86554 5567999999999999999999999999999999 68999999996 6899999999999999999999
Q ss_pred HHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHHHHh-----------
Q 011379 369 VCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE----------- 437 (487)
Q Consensus 369 ~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~~l~~----------- 437 (487)
+|++|+|++.+++.+ ..+++|+|.+.|.+.|++++++..+.+.+..++.+|++||+||+++|+++++.
T Consensus 279 ~a~~v~g~~~~~~~~-~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~~~a~~la 357 (429)
T 1c3c_A 279 LSRMMRAYVDPSLEN-IALWHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVL 357 (429)
T ss_dssp HHHHHHHTHHHHHHT-TCCSTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTTTTGGGHHHHH
T ss_pred HHHHHHHHHHHHHhc-CCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHCcCeeCHHHHHHHHHhccChHHHHHHH
Confidence 999999999988764 46899999999999999987777777777777899999999999999999974
Q ss_pred -----h-hcHHHHHH----HHHHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 011379 438 -----K-IGYDNAAA----VAKKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 485 (487)
Q Consensus 438 -----~-ig~~~A~~----ia~~a~~~g~~~re~~~~~----~~l~~eel~~~ldP~~~~g~ 485 (487)
+ +||+.||+ +++++.++|.+|+|++.++ +.++++|+++++||++|+|+
T Consensus 358 ~~L~~~gig~~~A~~iv~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~ 419 (429)
T 1c3c_A 358 LKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLLEDEEVKKLVTKEELEELFDISYYLKH 419 (429)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHTSSSCHHHHHHTCHHHHTTCCHHHHHHTTCTHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHhCChhhhccCCHHHHHHhCCHHHHhhh
Confidence 3 89999985 5777888999999999987 88999999999999999987
No 15
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=100.00 E-value=1.3e-81 Score=664.18 Aligned_cols=388 Identities=19% Similarity=0.179 Sum_probs=350.3
Q ss_pred ccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCc
Q 011379 54 LWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGS 132 (487)
Q Consensus 54 ~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~~v~~~~~~~~f~~~~~~~~~ 132 (487)
+|-.+.++++ |+ |++++++|++||+|+|.+|.++| ||++++++|.++| +|+++.++++.
T Consensus 13 ~~~~~~~~~i--~s--------d~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~----------~~d~~~i~~~~ 72 (444)
T 2pfm_A 13 RYTRPEMGAI--WT--------EENKFKAWLEVEILACEAWAELGDIPKEDVKKIREHA----------SFDIDRIYEIE 72 (444)
T ss_dssp TTCCHHHHHH--TS--------HHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHC----------CCCHHHHHHHH
T ss_pred hcchHHHHHH--cC--------hHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhC----------CCCHHHHHHHh
Confidence 6777889999 73 78999999999999999999999 9999999999886 35666666665
Q ss_pred ccccccchHHHHHHHH--HHHhC-ccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011379 133 GTQSNMNANEVIANRA--AEILG-HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 209 (487)
Q Consensus 133 ~~~~~~~~~evi~~~~--~e~lg-~~~g~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~l~~~L~~L~~~L~~~A~ 209 (487)
++ |.|+||+++. .|++| ++.|+| || +||||||++||+++|++++.+ ..|.+.|..|+++|.+||+
T Consensus 73 ~~----~~~dVia~~~~l~e~~g~g~~g~~-vH------~g~SsnDv~~Ta~~L~lr~~l-~~l~~~l~~L~~~L~~~A~ 140 (444)
T 2pfm_A 73 KE----TRHDVVAFTRAVSETPALGEERKW-VH------YGLTSTDVVDTALSYILKQAN-EIILKDLENFVSILANKAK 140 (444)
T ss_dssp HH----HCCHHHHHHHHHHTCTTCCGGGGG-TT------TTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred cc----CCCCHHHHHHHHHHHcCCCccccc-cc------CCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 43 6788888754 78885 577777 77 699999999999999987765 6999999999999999999
Q ss_pred HcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCCCCchHHHHHHHHHHcCC
Q 011379 210 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSL 289 (487)
Q Consensus 210 ~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl 289 (487)
+|+|++||||||+||||||||||||++|+++|.|+++||.+++++++.+|||| |+||+++++ +.+.+++++.|||
T Consensus 141 ~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-AvGt~~~~~----~~~~~~~a~~LGl 215 (444)
T 2pfm_A 141 EHKYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVERFKQAANTVRVGKLSG-AVGTYANID----PFVEKYVCENLGL 215 (444)
T ss_dssp HTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCC-TTSSCTTSC----HHHHHHHHHHTTC
T ss_pred HhcCCeeecccCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCch-hhccCCcCC----HHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999 899998865 4788999999999
Q ss_pred CCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCC--CCCCCCCCCCCCChhhhHHHH
Q 011379 290 PFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCEALT 367 (487)
Q Consensus 290 ~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~--~~~GSSiMP~K~NP~~~E~i~ 367 (487)
+.++.+ |++.+||++++++++|+.++++|+|||+||++|+ ++||||+.+|. +++|||||||||||+.+|.++
T Consensus 216 ~~~~~~---d~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~---~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~ 289 (444)
T 2pfm_A 216 EAAPIS---TQTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQ---KSETREVEEAFAKGQKGSSAMPHKRNPIGSENMT 289 (444)
T ss_dssp EECSSC---SSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHT---STTTCSEECCCCTTCCSCSSCTTCCCCHHHHHHH
T ss_pred CCCCCC---cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccccccccccccCCCcCccCCcccCCHHHHHHH
Confidence 986555 5567999999999999999999999999999999 68999999996 799999999999999999999
Q ss_pred HHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHHHHh----------
Q 011379 368 MVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE---------- 437 (487)
Q Consensus 368 ~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~~l~~---------- 437 (487)
++|++|+|++.+++.+ ..+++|+|.+.|.+.|++++++..+.+.+..++.+|++||+||+++|+++++.
T Consensus 290 ~~a~~v~g~~~~~~~~-~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~l 368 (444)
T 2pfm_A 290 GLARVIRGYMMTAYEN-VPLWHERDISHSSAERVILPDATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRV 368 (444)
T ss_dssp HHHHHHHHHHHHHHHT-SCCCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHTTTTTGGGHHHH
T ss_pred HHHHHHHHHHHHHHHh-CcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcCchHHHHH
Confidence 9999999999998775 46899999999999999997777777777777799999999999999999974
Q ss_pred ------h-hcHHHHHH----HHHHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 011379 438 ------K-IGYDNAAA----VAKKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 485 (487)
Q Consensus 438 ------~-ig~~~A~~----ia~~a~~~g~~~re~~~~~----~~l~~eel~~~ldP~~~~g~ 485 (487)
+ +||++|++ +++++.++|.+|+|++.++ +.+++++++++|||++|+|+
T Consensus 369 a~~L~~~gig~~~A~~iv~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~ 431 (444)
T 2pfm_A 369 MLTLIDKGMVREEAYDIVQPKAMEAWETQVQFKELVEADERITSKLTQEEINECFNYEHHMQH 431 (444)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCHHHHHHTCHHHHTTSCHHHHHHHTCGGGGGTT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHCCCHHHHHhcchhhhccCCHHHHHHhCCHHHHHhH
Confidence 3 89999984 5778888999999999987 88999999999999999997
No 16
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=1e-82 Score=675.15 Aligned_cols=400 Identities=23% Similarity=0.303 Sum_probs=350.6
Q ss_pred ccCccCh----HhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcc
Q 011379 51 SDKLWGA----QTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPL 125 (487)
Q Consensus 51 ~~~~~g~----~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~~v~~~~~~~~f~~ 125 (487)
.++|||+ +|.|+++||++|+ ++|+.++++.+.+|+|+|.+|.++| ||++++++|.++|++|.++...++||+
T Consensus 2 ~~~~~g~r~~~~t~~~~~~f~~s~---~~d~~l~~~~i~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~ 78 (462)
T 2e9f_A 2 AHRTWGGRFGEGPDALAARFNASL---AFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLDRIEEEIEAGTFPW 78 (462)
T ss_dssp ------------CCSHHHHHHCCH---HHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred CccccCCccchhhHHHHHhccCCC---ccCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcccCCc
Confidence 4689999 9999999999887 4688999999999999999999999 999999999999999988777788998
Q ss_pred cccccCcccccccchHHHHHHHHHHHhCccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011379 126 VVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLH 205 (487)
Q Consensus 126 ~~~~~~~~~~~~~~~~evi~~~~~e~lg~~~g~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~l~~~L~~L~~~L~ 205 (487)
++ +++++|||+ ++++.|++| +.|+| || +||||||++||+++|++++.+ ..|.+.|..|+++|.
T Consensus 79 ~~----~~~dv~~~~----~~~l~e~~g-~~g~~-vH------~g~SsnDv~~Ta~~l~lr~~l-~~l~~~l~~L~~~L~ 141 (462)
T 2e9f_A 79 RE----ELEDVHMNL----EARLTELVG-PPGGK-LH------TARSRNDQVATDLRLYLRGAI-DELLALLLALRRVLV 141 (462)
T ss_dssp CG----GGCSHHHHH----HHHHHHHHC-TTHHH-HT------TTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CC----CCCchHHHH----HHHHHHHcc-ccccc-ee------cCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 76 478888885 678899998 67777 88 599999999999999987765 799999999999999
Q ss_pred HHHHHcccc--cccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccc-cCCCCCCCCchHHHHHH
Q 011379 206 SKSVEFKDI--VKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASA 282 (487)
Q Consensus 206 ~~A~~~~d~--~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~Av-GT~~~~~~~~~~~v~~~ 282 (487)
++|++|+|+ +||||||+||||||||||||++|+++|.|+++||.+++++++.+||||+|+ ||++++++ ++
T Consensus 142 ~~A~~~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~-------~~ 214 (462)
T 2e9f_A 142 REAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFPIDR-------HF 214 (462)
T ss_dssp HHHHHTTTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCEECTTCCSSSCCSSCCCH-------HH
T ss_pred HHHHHccCcCccccCcccCccCeeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccCCCCCCH-------HH
Confidence 999999999 999999999999999999999999999999999999999999999999888 99998887 56
Q ss_pred HHHHcCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCC-CCCCCCCCCCChh
Q 011379 283 VAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENE-PGSSIMPGKVNPT 361 (487)
Q Consensus 283 la~~LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~-~GSSiMP~K~NP~ 361 (487)
+++.|||+. +..|++|++++||++++++++|+.++++|+|||+||++|+|+| ||||++|+.. +|||||||||||+
T Consensus 215 ~a~~LG~~~-~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~s~e---~g~iel~e~~~~GSSiMP~K~NP~ 290 (462)
T 2e9f_A 215 TARELGFKA-PMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEELILYSTEE---FGFVEVPDAFATGSSIMPQKKNPD 290 (462)
T ss_dssp HHHHTTCSE-ECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT---TCCEECCGGGCEECSSSSSCEECH
T ss_pred HHHHhCCCC-CCCCcHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcEEecCCCCCCCCCCCCCcCCH
Confidence 999999995 7899999999999999999999999999999999999999875 9999999875 5999999999999
Q ss_pred hhHHHHHHHHHhhcchHHHHHhccc--cchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHHHHh--
Q 011379 362 QCEALTMVCAQVIGNHVAITVGGSN--GHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE-- 437 (487)
Q Consensus 362 ~~E~i~~~a~~v~G~~~~~~~~~~~--~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~~l~~-- 437 (487)
.+|.++++|++|+|++.+++++..+ .+++++.... -..+++++..+..++..+. .+++||+||+++|+++++.
T Consensus 291 ~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~rDl~~~--~~~l~~s~~~~~~~l~~~~-~~l~gl~vn~e~m~~~l~~~~ 367 (462)
T 2e9f_A 291 ILELIRAKAGRVLGAFVGLSAVVKGLPLAYNKDLQED--KEPLLDALATYRDSLRLLA-ALLPGLKWRRERMWRAAEGGY 367 (462)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHTTCCSSBCGGGGGG--HHHHHHHHHHHHHHHHHHH-HHGGGCEECHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHhhhchhhh--HhHHHHHHHHHHHHHHHHH-HHhCcCEECHHHHHHHHhcCc
Confidence 9999999999999999998764332 3555554432 1257888999999999985 5999999999999999877
Q ss_pred --------hh---------cHHHHHHHHHHHHHcCCCHHHHHHHc-----CCCCHHHHhhccCcccccCC
Q 011379 438 --------KI---------GYDNAAAVAKKAHKEGTTLKDAALKL-----GVLNSEEFDNLVVPEKMIGP 485 (487)
Q Consensus 438 --------~i---------g~~~A~~ia~~a~~~g~~~re~~~~~-----~~l~~eel~~~ldP~~~~g~ 485 (487)
.+ ||+.+.+++++|.++|++|+|+..++ +.++ +++++++||+.|+..
T Consensus 368 ~~at~l~~~Lv~~G~~~r~ay~~v~~~~~~a~~~g~~l~e~~~~~~~~~~~~l~-~~l~~~ldp~~~~~~ 436 (462)
T 2e9f_A 368 TLATELADYLAEKGLPFREAHHVVGRLVRRLVEEGRALKDLTLEELQAHHPLFA-EDALPLLRLETAIHR 436 (462)
T ss_dssp TTHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHCTTCC-GGGGGGGSHHHHTTS
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhH-HHHHHhCCHHHHHhc
Confidence 33 66666677888888999999887765 7887 789999999999954
No 17
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=100.00 E-value=3.4e-82 Score=672.19 Aligned_cols=403 Identities=19% Similarity=0.232 Sum_probs=346.9
Q ss_pred cccccCccCh----HhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCC
Q 011379 48 LVPSDKLWGA----QTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDH 122 (487)
Q Consensus 48 ~~p~~~~~g~----~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~~v~~~~~~~~ 122 (487)
+-|.+++||+ ++.|.+++|++|+ ++|+.++++|++||+|+|.+|+++| ||++++++|.++|++|.++...++
T Consensus 4 ~~~~~~~~~~r~~~~~~~~~~~f~~s~---~~d~~~~~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~ 80 (468)
T 1k7w_A 4 EARGDKLWGGRFSGSTDPIMEKLNSSI---AYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKGV 80 (468)
T ss_dssp ---------------CCHHHHHHHCCH---HHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCcccccccccchhHHHHHHHccCCC---cccHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhhccc
Confidence 3466678887 9999999999887 4688999999999999999999999 999999999999999988777788
Q ss_pred CcccccccCcccccccchHHHHHHHHHHHhCccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011379 123 FPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHN 202 (487)
Q Consensus 123 f~~~~~~~~~~~~~~~~~~evi~~~~~e~lg~~~g~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~l~~~L~~L~~ 202 (487)
||+++ +++++|||+ ++++.|++| +.|+| || +||||||++||+++|++++.+ ..|.+.|..|++
T Consensus 81 f~~~~----~~~dv~m~~----~~~l~e~~g-~~g~~-vH------~g~SsnDv~~Ta~~l~lr~~l-~~l~~~L~~L~~ 143 (468)
T 1k7w_A 81 FVVKQ----SDEDIHTAN----ERRLKELIG-DIAGK-LH------TGRSRNDQVVTDLKLFMKNSL-SIISTHLLQLIK 143 (468)
T ss_dssp CCCCT----TCCSHHHHH----HHHHHHHHC-GGGGG-GG------TTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CccCC----CCCchHHHH----HHHHHHHcc-ccccc-ee------cCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 98876 478888874 788899998 67877 88 599999999999999987765 799999999999
Q ss_pred HHHHHHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccc-cCCCCCCCCchHHHHH
Q 011379 203 SLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIAS 281 (487)
Q Consensus 203 ~L~~~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~Av-GT~~~~~~~~~~~v~~ 281 (487)
+|.++|++|+|++||||||+||||||||||||++|+++|.|+++||.+++++++.+||||+|+ ||++++++ +
T Consensus 144 ~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~-------~ 216 (468)
T 1k7w_A 144 TLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDR-------E 216 (468)
T ss_dssp HHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEECTTCTTTTCCTTCCCH-------H
T ss_pred HHHHHHHHccCCEeeccccCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCCCCCCh-------H
Confidence 999999999999999999999999999999999999999999999999999999999999988 99998887 5
Q ss_pred HHHHHcCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCC-CCCCCCCCCCCh
Q 011379 282 AVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENE-PGSSIMPGKVNP 360 (487)
Q Consensus 282 ~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~-~GSSiMP~K~NP 360 (487)
++++.|||+. +..|++|++++||++++++++|+.++++|+|||+||++|+|+| ||||++|+.. +|||||||||||
T Consensus 217 ~la~~LG~~~-~~~n~~~~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~s~e---~g~iel~e~~~~GSSiMP~K~NP 292 (468)
T 1k7w_A 217 MLRSELEFAS-ISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGASLMPQKKNP 292 (468)
T ss_dssp HHHHHHTCSE-ECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT---TCCEECCGGGCEEETTEEEEEEC
T ss_pred HHHHHcCCCC-CCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCceeccCCCCCCCCCCCCCCCc
Confidence 6999999995 7899999999999999999999999999999999999999875 9999999875 599999999999
Q ss_pred hhhHHHHHHHHHhhcchHHHHHhccc--cchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHHHHh-
Q 011379 361 TQCEALTMVCAQVIGNHVAITVGGSN--GHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE- 437 (487)
Q Consensus 361 ~~~E~i~~~a~~v~G~~~~~~~~~~~--~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~~l~~- 437 (487)
+.+|.++++|++|+|++.++++...+ .+++++.... -..+++++..+..++..+. .|++||+||+++|+++++.
T Consensus 293 ~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~rDl~~~--~~~l~~s~~~~~~~l~~~~-~~l~gl~vn~e~m~~~l~~~ 369 (468)
T 1k7w_A 293 DSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQED--KEAVFDVVDTLTAVLQVAT-GVISTLQISKENMEKALTPE 369 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCGGGGGH--HHHHHHHHHHHHHHHHHHH-HHHHHCEECHHHHHHTCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHhhhhhhhh--HhHHHHHHHHHHHHHHHHH-HHhCCCEECHHHHHHHhhCC
Confidence 99999999999999999998754432 3555554432 1257888999999999985 5999999999999999865
Q ss_pred --------h-----h----cHHHHHHHHHHHHHcCCCHHHHHHHc-----CCCCHHHHhhccCcccccCC
Q 011379 438 --------K-----I----GYDNAAAVAKKAHKEGTTLKDAALKL-----GVLNSEEFDNLVVPEKMIGP 485 (487)
Q Consensus 438 --------~-----i----g~~~A~~ia~~a~~~g~~~re~~~~~-----~~l~~eel~~~ldP~~~~g~ 485 (487)
. + +|+.+.+++++|.++|++|+|+..++ +.++ +++++++||+.|+..
T Consensus 370 ~~at~l~~~Lv~~G~~~r~ay~~v~~~~~~a~~~g~~l~e~~~~~~~~~~~~l~-~~~~~~ldp~~~~~~ 438 (468)
T 1k7w_A 370 MLATDLALYLVRKGVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFS-SDVSQVFNFVNSVEQ 438 (468)
T ss_dssp GGHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHTTTCCGGGCCHHHHHHHCTTCC-GGGGGGSCHHHHHTT
T ss_pred ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhH-HHHHHhCCHHHHHhc
Confidence 2 3 45555566667777788888876665 7786 789999999999954
No 18
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=5.3e-80 Score=653.59 Aligned_cols=399 Identities=19% Similarity=0.253 Sum_probs=347.5
Q ss_pred CccCh----HhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccc
Q 011379 53 KLWGA----QTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVV 127 (487)
Q Consensus 53 ~~~g~----~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~~v~~~~~~~~f~~~~ 127 (487)
++||+ ++.+.+++|+.|.. .|..++++.+.+++|+|.+|.++| ||++++++|.++|+++.++...++|++++
T Consensus 2 ~~~~gr~~~~~~~~~~~f~~s~~---~d~~l~~~~i~~~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~~~~~ 78 (457)
T 1tj7_A 2 ALWGGRFTQAADQRFKQFNDSLR---FDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVRARPQQILE 78 (457)
T ss_dssp -CCCTTCSSCCCHHHHHHHCCHH---HHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHCGGGGGG
T ss_pred cccccccccchHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcCCcCcCC
Confidence 36665 89999999987754 467899999999999999999999 99999999999999988776777888875
Q ss_pred cccCcccccccchHHHHHHHHHHHhCccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011379 128 WQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSK 207 (487)
Q Consensus 128 ~~~~~~~~~~~~~~evi~~~~~e~lg~~~g~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~l~~~L~~L~~~L~~~ 207 (487)
+ +++++|||+| +++.|++| +.|+| || +||||||++||+++|++++.+ ..|.+.|..|+++|.++
T Consensus 79 ~---~~~dv~~~v~----~~l~e~~g-~~g~~-vH------~g~SsnD~~~Ta~~l~lr~~l-~~l~~~l~~l~~~L~~~ 142 (457)
T 1tj7_A 79 S---DAEDIHSWVE----GKLIDKVG-QLGKK-LH------TGRSRNDQVATDLKLWCKDTV-SELLTANRQLQSALVET 142 (457)
T ss_dssp S---CCSSHHHHHH----HHHHHHHG-GGGGG-TT------TTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred C---CCCcHHHHHH----HHHHHHcc-ccccc-ee------cCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3 6788888864 77889998 56777 88 699999999999999987765 69999999999999999
Q ss_pred HHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccc-cCCCCCCCCchHHHHHHHHHH
Q 011379 208 SVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEE 286 (487)
Q Consensus 208 A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~Av-GT~~~~~~~~~~~v~~~la~~ 286 (487)
|++|+|++||||||+||||||||||||++|+++|.|+++||.+++++++.+||||+|+ ||++++++ +++++.
T Consensus 143 A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~-------~~la~~ 215 (457)
T 1tj7_A 143 AQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDR-------EQLAGW 215 (457)
T ss_dssp HHTTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCTTCTTTTCCSSCCCH-------HHHHHH
T ss_pred HHHccCCeeeccccCcCCeechHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCCCCCH-------HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988 99999887 579999
Q ss_pred cCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCC-CCCCCCCCCCChhhhHH
Q 011379 287 TSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENE-PGSSIMPGKVNPTQCEA 365 (487)
Q Consensus 287 LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~-~GSSiMP~K~NP~~~E~ 365 (487)
|||+. +..|++||+++||++++++++|+.++++|+|||+||++|+|+| ||||++|+.. +|||||||||||+.+|.
T Consensus 216 LGl~~-~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~e---~g~iel~e~~~~GSSiMP~K~NP~~~E~ 291 (457)
T 1tj7_A 216 LGFAS-ATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGE---AGFVELSDRVTSGSSLMPQKKNPDALEL 291 (457)
T ss_dssp HTCSS-BCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT---TCCEECCGGGCBCCTTCTTCCBCHHHHH
T ss_pred cCCCC-CCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCceeccCCCCCCCCCCCCCCCcHHHHH
Confidence 99996 7899999999999999999999999999999999999999875 9999999875 79999999999999999
Q ss_pred HHHHHHHhhcchHHHHHhccc--cchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHHHHh------
Q 011379 366 LTMVCAQVIGNHVAITVGGSN--GHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE------ 437 (487)
Q Consensus 366 i~~~a~~v~G~~~~~~~~~~~--~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~~l~~------ 437 (487)
++++|++|+|++.++++...+ .+++++.... -..+++++..+..++..+.. |++||+||+++|+++++.
T Consensus 292 i~~~a~~v~g~~~~~~~~~~~~p~~~~RDl~~~--~~~l~~s~~~~~~~l~~~~~-~l~gl~vn~~~m~~~l~~~~~~at 368 (457)
T 1tj7_A 292 IRGKCGRVQGALTGMMMTLKGLPLAYNKDMQED--KEGLFDALDTWLDCLHMAAL-VLDGIQVKRPRCQEAAQQGYANAT 368 (457)
T ss_dssp HHHTHHHHHHHHHHHHHHHTTCCSSCCGGGGGH--HHHHHHHHHHHHHHHHHHHH-HHTTCEECHHHHHHHHTSTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHhhcchhhH--HhHHHHHHHHHHHHHHHHHH-HHccCEECHHHHHHHHhcCCchHH
Confidence 999999999999998665433 3455554321 12478888999999999865 999999999999999876
Q ss_pred ----hh---c------HHHHHHHHHHHHHcCCCHHHHHHHc-C---CCCHHHHhhccCcccccC
Q 011379 438 ----KI---G------YDNAAAVAKKAHKEGTTLKDAALKL-G---VLNSEEFDNLVVPEKMIG 484 (487)
Q Consensus 438 ----~i---g------~~~A~~ia~~a~~~g~~~re~~~~~-~---~l~~eel~~~ldP~~~~g 484 (487)
.+ | |+.+.+++++|.++|++|+|+..++ . .+.++|+++++||++++.
T Consensus 369 ~l~~~Lv~~G~~~r~Ay~~v~~~~~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~ 432 (457)
T 1tj7_A 369 ELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCLD 432 (457)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTCTTCCTTHHHHTSHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhhhcHHHHHHhCCHHHHHh
Confidence 22 4 5555567777778888888876665 3 234678999999999983
No 19
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=100.00 E-value=3.6e-78 Score=630.58 Aligned_cols=365 Identities=22% Similarity=0.265 Sum_probs=304.4
Q ss_pred cccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCccccc
Q 011379 50 PSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVW 128 (487)
Q Consensus 50 p~~~~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~~v~~~~~~~~f~~~~~ 128 (487)
|.+.+|+.+.++.+ |+ |++++++|++||+|+|.+|.++| ||++++++|.++ +|+++.+
T Consensus 5 p~~~ry~~~~~~~i--~s--------d~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a-----------~~d~~~~ 63 (403)
T 1dof_A 5 PFDWRYGSEEIRRL--FT--------NEAIINAYLEVERALVCALEELGVAERGCCEKVNKA-----------SVSADEV 63 (403)
T ss_dssp GGGTTSSCHHHHTT--SS--------HHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHC-----------CCCTTTC
T ss_pred CcccccCcHHHHHH--cC--------hHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC-----------CCCHHHH
Confidence 56678888999998 73 78999999999999999999999 999999999877 3667788
Q ss_pred ccCcccccccchHHHHHHHH--HHHhCccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011379 129 QTGSGTQSNMNANEVIANRA--AEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHS 206 (487)
Q Consensus 129 ~~~~~~~~~~~~~evi~~~~--~e~lg~~~g~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~l~~~L~~L~~~L~~ 206 (487)
+++.++ |.||||+++. .|++| |+| || +||||||++||+++|++++.+ ..|.+.|..|+++|.+
T Consensus 64 ~~~~~~----~~~dVia~~~~l~e~~G---g~~-vH------~g~SsnD~~~Ta~~l~~r~~l-~~l~~~l~~L~~~L~~ 128 (403)
T 1dof_A 64 YRLERE----TGHDILSLVLLLEQKSG---CRY-VH------YGATSNDIIDTAWALLIRRAL-AAVKEKARAVGDQLAS 128 (403)
T ss_dssp ------------CHHHHHHHHHHHHHC---CSC-TT------TTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHhhc----cCCcHHHHHHHHHHHcC---CCc-cc------CCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 877665 6789888754 78887 667 87 699999999999999987765 6999999999999999
Q ss_pred HHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCCCCchHHHHHHHHHH
Q 011379 207 KSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE 286 (487)
Q Consensus 207 ~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~ 286 (487)
||++|+|++||||||+|||+||||||||++|+++|.|+ +||.+++++++.+|||| |+|||++.++ |++.+.+++++.
T Consensus 129 ~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~-~rL~~~~~~~~~~~lGg-AvGt~~~~~~-~~~~~~~~~a~~ 205 (403)
T 1dof_A 129 MARKYKTLEMVGRTHGQWAEPITLGFKFANYYYELYIA-CRQLALAEEFIRAKIGG-AVGTMASWGE-LGLEVRRRVAER 205 (403)
T ss_dssp HHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHH-HHHHHHHHHHCCBCCCC-TTSSCGGGGG-GHHHHHHHHHHH
T ss_pred HHHHhcCCeeeccccCcccccCcHHHHHHHHHHHHHHH-HHHHHHHHHhcccCccH-HHhhCccccc-ccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999 9999999877 889999999999
Q ss_pred cCCCCccCCchhhHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCCCCCCCCCCCCChhhhHH
Q 011379 287 TSLPFVTAENKFEALA-AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEA 365 (487)
Q Consensus 287 LGl~~~~~~n~~da~~-~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~~GSSiMP~K~NP~~~E~ 365 (487)
|||+.++.+| ++ +||++++++++|+.++++|+|||+||++|+ |+|||||++| + +|||||||||||+.+|.
T Consensus 206 lGl~~~~~~~----~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~---~~e~~ei~lp-~-~GSSiMP~K~NP~~~E~ 276 (403)
T 1dof_A 206 LGLPHHVITT----QVAPRESFAVLASALALMAAVFERLAVEIRELS---RPEIGEVVEG-G-GGSSAMPHKANPTASER 276 (403)
T ss_dssp TTCCBCSSCS----SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---STTTCSEESC-C----------CCCHHHHH
T ss_pred hCcCCCCCcc----hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCccCeEeCC-C-CccCCCCCCCCchHHHH
Confidence 9999877665 56 999999999999999999999999999999 6899999999 8 99999999999999999
Q ss_pred HHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHHHHhhhcHHHHH
Q 011379 366 LTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHEKIGYDNAA 445 (487)
Q Consensus 366 i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~~l~~~ig~~~A~ 445 (487)
++++|++|+|++.++.. +..+++|+|...|.+.|..+++...+.+.+..++.+|++||+||++||+++++...|+..|+
T Consensus 277 i~~~a~~v~g~~~~~~~-~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~a~ 355 (403)
T 1dof_A 277 IVSLARYVRALTHVAFE-NVALWHERDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTE 355 (403)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHH-cCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhccCHHHHH
Confidence 99999999999998876 45689999999998887777666555555555558999999999999999997523444444
Q ss_pred HHHHHHHHcCCCHHHHHH
Q 011379 446 AVAKKAHKEGTTLKDAAL 463 (487)
Q Consensus 446 ~ia~~a~~~g~~~re~~~ 463 (487)
+++..+..+|+++++++.
T Consensus 356 ~l~~~L~~~gig~~~A~~ 373 (403)
T 1dof_A 356 FHMNRMIKEGASRAEAYK 373 (403)
T ss_dssp HHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHhhcCCCHHHHHH
Confidence 444444444555555444
No 20
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=100.00 E-value=2.7e-78 Score=641.64 Aligned_cols=404 Identities=16% Similarity=0.136 Sum_probs=350.7
Q ss_pred cccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CC------HHHHHHHHHHHHHHHccccCCC
Q 011379 50 PSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LD------PAIGKAIMQAAQEVAEGKLNDH 122 (487)
Q Consensus 50 p~~~~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~------~~~a~~I~~a~~~v~~~~~~~~ 122 (487)
|-+.+|+.++.+..+.|+ |++++++++++|+|++++++++| || ++++++|.++|+++..+
T Consensus 11 ~~~gRy~~~~~~~~~~fs--------d~~~i~~~~~ve~A~a~ala~~g~i~~ip~i~~~~a~~I~~~~~~i~~g----- 77 (462)
T 2ptr_A 11 PVDGRYGDKVSALRGIFS--------EYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEE----- 77 (462)
T ss_dssp TTTTTTGGGSGGGGGTTS--------HHHHHHHHHHHHHHHHHHHHHCTTCTTSCCCCHHHHHHHHHHHHTCCHH-----
T ss_pred cccccccCchHHHHHHCC--------cHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhccC-----
Confidence 455577776444454484 78999999999999999999997 83 89999999999765432
Q ss_pred CcccccccCcccccccchHHHHHHHHHHHhCccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 011379 123 FPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNS-RLIPNLKVLH 201 (487)
Q Consensus 123 f~~~~~~~~~~~~~~~~~~evi~~~~~e~lg~~~g~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~-~l~~~L~~L~ 201 (487)
+++.+++++ +..++++++++.++ .+++| +.|.. .|+++|||+||||||++||+++|++++. +. .|.+.|..|+
T Consensus 78 -~~~~~~~~~-~~~~~dv~av~~~l-~e~~g-~~g~~-~~~~~~vH~g~SsnDv~~Ta~~L~lr~~-l~~~l~~~L~~L~ 151 (462)
T 2ptr_A 78 -DAARIKTIE-RTTNHDVKAVEYFL-KEKVA-EIPEL-HAVSEFIHFACTSEDINNLSHALMLKTA-RDEVILPYWRQLI 151 (462)
T ss_dssp -HHHHHHHHH-HHHSCHHHHHHHHH-HHHHT-TSHHH-HTTGGGTTTTCCHHHHHHHHHHHHHHHH-HHHTHHHHHHHHH
T ss_pred -CHHHHHhhc-cccCCCHHHHHHHH-HHHhc-cccCC-cchhhhccCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 345566665 77899998876554 68888 45544 6899999999999999999999998766 46 5999999999
Q ss_pred HHHHHHHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCCCCch----H
Q 011379 202 NSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFD----V 277 (487)
Q Consensus 202 ~~L~~~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~~~~~----~ 277 (487)
++|.+||++|+|++||||||+||||||||||||++|+++|.|+++||.+++ ..+++|| ||||+.+..+.|+ .
T Consensus 152 ~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~---~~~~~~G-AvGT~~~~~~~~~~~~~~ 227 (462)
T 2ptr_A 152 DGLKDLAVQYRDIPLLSRTAGQPATPSTIGKEMANVAYRMERQYRQLNQVE---ILGKING-AVGNYNAHIAAYPEVDWH 227 (462)
T ss_dssp HHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC---CEECCCC-TTSSCHHHHHHCTTSCHH
T ss_pred HHHHHHHHHccCCEeeccccCeeceechHHHHHHHHHHHHHHHHHHHHHHH---HHhccCc-hhcchhhcccccCcccHH
Confidence 999999999999999999999999999999999999999999999999987 3677777 9999987776666 7
Q ss_pred HHHHHHHHHcCCCCccCCchhh-HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCCCCCCCCCC
Q 011379 278 KIASAVAEETSLPFVTAENKFE-ALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPG 356 (487)
Q Consensus 278 ~v~~~la~~LGl~~~~~~n~~d-a~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~~GSSiMP~ 356 (487)
++.+++++.|||. +|+++ ++++||++++++++|+.++++|+|||+||++|+|+|+ |+| .+|++++|||||||
T Consensus 228 ~v~~~~~~~LGl~----~n~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~s~~~--~~E-~~~~~~~GSSiMP~ 300 (462)
T 2ptr_A 228 QFSEEFVTSLGIQ----WNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNH--FKQ-KTIAGEIGSSTMPH 300 (462)
T ss_dssp HHHHHHHHHTTCE----ECCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--EEE-CCCTTCCSCSSCTT
T ss_pred HHHHHHHHHhCCC----CCchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--hhc-cCCCCCCcCCCCCC
Confidence 7999999999994 57788 4899999999999999999999999999999999875 666 45678999999999
Q ss_pred CCChhhhHHHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHHHH
Q 011379 357 KVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLH 436 (487)
Q Consensus 357 K~NP~~~E~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~~l~ 436 (487)
||||+.+|.++++|++++|+..+++.+...+++|+|.+.|.+.+++++++..+..++..+. .|++||+||++||+++++
T Consensus 301 K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~erd~~~~~~~~~l~~~~~~~~~~l~~~~-~~l~gl~vn~e~m~~~l~ 379 (462)
T 2ptr_A 301 KVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTL-KGVSKLEVNRDHLLDELD 379 (462)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCTHHHHHGGGHHHHHHHHHHHHHHHH-HHHHHEEECHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHH-HHHCcCEECHHHHHHHHH
Confidence 9999999999999999999999988876678999999999988899999999999999986 799999999999999997
Q ss_pred h--------------hhcHHHHHHHHHHHHH----cCCCHHHHHHHcCCC--CHHHHhhccCcccccCC
Q 011379 437 E--------------KIGYDNAAAVAKKAHK----EGTTLKDAALKLGVL--NSEEFDNLVVPEKMIGP 485 (487)
Q Consensus 437 ~--------------~ig~~~A~~ia~~a~~----~g~~~re~~~~~~~l--~~eel~~~ldP~~~~g~ 485 (487)
. ..||++|+++++++++ +|.+|+|++.+.+.. .+++++ +|||++|+|+
T Consensus 380 ~~~~~~te~~~~~l~~~G~~~A~~iv~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~l~-~ldp~~~~~~ 447 (462)
T 2ptr_A 380 HNWEVLAEPIQTVMRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKARLK-AMTPANYIGR 447 (462)
T ss_dssp TCGGGGHHHHHHHHHHTTCSSHHHHHHHC-----CCHHHHHHHHHTSSSCHHHHHHHH-TCCGGGCCTT
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCHHHHHHhcCCCcccHHHHH-hCCHHHHhCh
Confidence 7 2389999999999887 889999999876633 368899 9999999997
No 21
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=100.00 E-value=1.6e-74 Score=607.91 Aligned_cols=387 Identities=17% Similarity=0.175 Sum_probs=310.6
Q ss_pred CccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccC
Q 011379 53 KLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 131 (487)
Q Consensus 53 ~~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~~v~~~~~~~~f~~~~~~~~ 131 (487)
.+|+.+.++.+ |+ ++++++.|++||.|++.++++ | ||++.+++|.++++ + ..+.+...
T Consensus 3 ~ry~~~~m~~~--fs--------~~~~~~~~l~ve~Ala~a~~~-GlIp~~~~~~i~~~~~-~---------d~~~i~~~ 61 (438)
T 4eei_A 3 KRYDVAEISKI--WA--------DENKYAKMLEVELAILEALED-RMVPKGTAAEIRARAQ-I---------RPERVDEI 61 (438)
T ss_dssp GGGCCHHHHHH--HS--------HHHHHHHHHHHHHHHHHHGGG-TTSCTTHHHHHHHHCC-C---------CHHHHHHH
T ss_pred cccCcHHHHHH--cC--------hHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHhhCC-C---------CHHHHHHH
Confidence 37999999999 74 789999999999999999999 9 99999999987741 1 11111000
Q ss_pred cccccccchHHHHHHHHHHHhCccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011379 132 SGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEF 211 (487)
Q Consensus 132 ~~~~~~~~~~evi~~~~~e~lg~~~g~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~l~~~L~~L~~~L~~~A~~~ 211 (487)
.. ..+.++. .++..+.+.+|++.|+| || +|+||||++||+++|++++. +..|.+.|..|+++|.++|++|
T Consensus 62 e~-~~~hdV~-a~~~~l~e~~g~~~~~~-iH------~G~SsnDv~~Ta~~L~lr~~-~~~l~~~L~~l~~~L~~~A~~~ 131 (438)
T 4eei_A 62 EK-VTKHDII-AFCTSIAEQFTAETGKF-FH------FGVTSSDIIDSALSLQIRDS-MSYVIKDLEALCDSLLTKAEET 131 (438)
T ss_dssp HH-HHSCHHH-HHHHHHHTTSCTTTTTT-TT------CSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-hcCCCHH-HHHHHHHHHcCHHhhcc-cC------CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0111232 24567888898554777 88 59999999999999998766 5799999999999999999999
Q ss_pred ccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCCCCchHHHHHHHHHHcCCCC
Q 011379 212 KDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPF 291 (487)
Q Consensus 212 ~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~~ 291 (487)
+|++||||||+||||||||||||++|+++|.|+++||.+++++++.+|||| |+||++++++ .+.+++++.|||+.
T Consensus 132 ~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lgG-AvGT~~~~~~----~~~~~~a~~LG~~~ 206 (438)
T 4eei_A 132 KEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSG-AVGNYCILTT----EDEKKAADILGLPV 206 (438)
T ss_dssp TTCEEEEEETTEEEEEEETHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCC-TTSCCSSSCH----HHHHHHHHHHTCCB
T ss_pred hCCcccccccCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcc-HhhCcccccH----HHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999997 8999998865 45678999999986
Q ss_pred ccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcC--CCCCCCCCCCCCCChhhhHHHHHH
Q 011379 292 VTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEALTMV 369 (487)
Q Consensus 292 ~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp--~~~~GSSiMP~K~NP~~~E~i~~~ 369 (487)
. +|+ +++++||++++++++|+.++++|+|||+||++|+ |+||||+.+| ++++|||||||||||+.+|.++++
T Consensus 207 ~--~~~-~~v~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~---~~e~gel~~~f~~~q~GSSiMP~K~NP~~~E~i~~~ 280 (438)
T 4eei_A 207 E--EVS-TQVIPRDRIAKLISIHGLIASAIERLAVEIRHLH---RSDVFEVYEGFSKGQKGSSTMPHKKNPISTENLTGM 280 (438)
T ss_dssp C--SSC-SSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---STTTCSEECCC------------CCCCHHHHHHHHH
T ss_pred C--Ccc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccceeccccccCCCCCCCCCCCCCcHHHHHHHHH
Confidence 4 343 4688999999999999999999999999999999 6899999998 579999999999999999999999
Q ss_pred HHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHHHHh------------
Q 011379 370 CAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE------------ 437 (487)
Q Consensus 370 a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~~l~~------------ 437 (487)
|++|+|+..+. +.....++|++...+...|++++++..+.+++..++.+|++||+||+++|++|++.
T Consensus 281 a~~v~g~~~~~-~~~~~~~~erdl~~~~~er~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~~~a~~~a~ 359 (438)
T 4eei_A 281 ARMLRSHVSIA-LENCVLWHERDISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHF 359 (438)
T ss_dssp HHHHHHHHHHH-HHTTCCCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHCCTTHHHHHHHH
T ss_pred HHHHHHHHHHH-HhccchhcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHHHH
Confidence 99999998654 33555678998888888899999999999999999999999999999999999985
Q ss_pred -----hhcHHHHHHH----HHHHHHcCCCHHHHHHHc------C--CCCHHHHhhccCcccccCC
Q 011379 438 -----KIGYDNAAAV----AKKAHKEGTTLKDAALKL------G--VLNSEEFDNLVVPEKMIGP 485 (487)
Q Consensus 438 -----~ig~~~A~~i----a~~a~~~g~~~re~~~~~------~--~l~~eel~~~ldP~~~~g~ 485 (487)
.++++.||++ +++|.+ |++|+|++.+. . .++++++++++| .|.|+
T Consensus 360 ~Lv~~g~~~~~Ah~~v~~~~~~a~~-g~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~d--~~gG~ 421 (438)
T 4eei_A 360 LVANTPFMREDCYKIVQQVAFDLKQ-GESFSKKLQKVMHDEHNIILDIPEMDFEGIKK--TYLKE 421 (438)
T ss_dssp HHHHSSCCHHHHHHHHHHC--------CCHHHHHHHHHHHTTCCCCCCCCCSHHHHHH--HHTTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHhhhhccccCCCHHHHHHHHH--hcCCc
Confidence 2455555543 445566 88888877662 2 466778888888 67765
No 22
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=100.00 E-value=1.1e-73 Score=611.04 Aligned_cols=408 Identities=16% Similarity=0.135 Sum_probs=333.3
Q ss_pred cccCCCCccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHcc
Q 011379 40 EKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG--LDPAIGKAIMQAAQEVAEG 117 (487)
Q Consensus 40 e~d~~g~~~~p~~~~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G--i~~~~a~~I~~a~~~v~~~ 117 (487)
+++.+.....|.+.+|+.+.++.+ |+ ++++++.|+++|.|+|.+++++| ||++++++|.++++++
T Consensus 28 ~~~~~~~~~spl~~ry~~~~m~~~--fS--------~~~~~~~~~~~e~Ala~a~~~~Gl~i~~e~~~~I~~~l~~i--- 94 (503)
T 2j91_A 28 DHGSPDSYRSPLASRYASPEMCFV--FS--------DRYKFRTWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENI--- 94 (503)
T ss_dssp CSCCTTSCCCHHHHTTSCHHHHHH--TS--------HHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTSSCC---
T ss_pred cccCcccccCCcccccCCHHHHHH--hC--------hhHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc---
Confidence 444578889999999999999999 74 67999999999999999999999 8999999998865432
Q ss_pred ccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011379 118 KLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNL 197 (487)
Q Consensus 118 ~~~~~f~~~~~~~~~~~~~~~~~~evi~~~~~e~lg~~~g~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~l~~~L 197 (487)
..+...+. ....+.+++.+++ .+.+.+| +.|+| || +|+||||+.+|+..|++++. +..|.+.|
T Consensus 95 ------~~~~~~~~-e~~~~hDV~a~v~-~l~e~~g-~~~~~-iH------~G~TS~Di~dta~~L~lr~a-l~~l~~~L 157 (503)
T 2j91_A 95 ------DFKMAAEE-EKRLRHDVMAHVH-TFGHCCP-KAAGI-IH------LGATSCYVGDNTDLIILRNA-LDLLLPKL 157 (503)
T ss_dssp ------CHHHHHHH-HHHHSCHHHHHHH-HHHHHCT-TTGGG-TT------TTCCTHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred ------CHHHHhhh-hhhcCCcHHHHHH-HHHHHhc-ccccc-cc------CCCCHhhHHHHHHHHHHHHH-HHHHHHHH
Confidence 22211110 0122345555565 3678888 66777 88 59999999999999998766 57999999
Q ss_pred HHHHHHHHHHHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCC------CCC
Q 011379 198 KVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTG------LNT 271 (487)
Q Consensus 198 ~~L~~~L~~~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~------~~~ 271 (487)
..|+++|.++|++|+|++||||||+||||||||||+|++|+++|.|+++||.++++++..+++|| ++||+ ++.
T Consensus 158 ~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~l~~lg~gG-~~GT~a~~~~~f~~ 236 (503)
T 2j91_A 158 ARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKG-TTGTQASFLQLFEG 236 (503)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCC-TTSSCHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCcEeeccccCccceecchHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-cccchhhhccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988 68998 444
Q ss_pred CCCchHHHHHHHHHHcCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCC--CCC
Q 011379 272 KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEP 349 (487)
Q Consensus 272 ~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~--~~~ 349 (487)
|+...+.+.+++++.|||+. ..+|+. ++++||++++++++|+.++++|+|||+||++|+| +|||.+|. +++
T Consensus 237 D~~~~~~v~~~~a~~LGl~~-~~~~s~-~~~~rd~~~e~~~~la~la~~L~kia~Dirll~s-----~~ei~ep~~~~q~ 309 (503)
T 2j91_A 237 DDHKVEQLDKMVTEKAGFKR-AFIITG-QTYTRKVDIEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQI 309 (503)
T ss_dssp CHHHHHHHHHHHHHHTTCSC-BCSCCS-SSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTSEECCC-----
T ss_pred chHHHHHHHHHHHHHhCCCC-CCCccc-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cceeeccccCCCC
Confidence 44335688899999999995 344553 6899999999999999999999999999999996 99999994 589
Q ss_pred CCCCCCCCCChhhhHHHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHH
Q 011379 350 GSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRE 429 (487)
Q Consensus 350 GSSiMP~K~NP~~~E~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~e 429 (487)
|||||||||||+.+|.++++|++|+|++++++.....++||+|...|.+.+..++++..+.++++.++..|++||+||++
T Consensus 310 GSSiMP~K~NPv~~E~i~~~a~~v~g~~~~~~~~~~~~~~erd~~~s~~~~~~l~~~~~~~~~~l~~~~~~l~gL~vn~e 389 (503)
T 2j91_A 310 GSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPK 389 (503)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHHTTHHHHHHHHTCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHH
T ss_pred CCCCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchHHHHhhHHHHHHHHHHHHHHHHHHHcCCEECHH
Confidence 99999999999999999999999999998888877888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHcCCCHHHHH---------------------------HHcCC--CCHHHHhhccCcc
Q 011379 430 RISKLLHEKIGYDNAAAVAKKAHKEGTTLKDAA---------------------------LKLGV--LNSEEFDNLVVPE 480 (487)
Q Consensus 430 rm~~~l~~~ig~~~A~~ia~~a~~~g~~~re~~---------------------------~~~~~--l~~eel~~~ldP~ 480 (487)
+|+++++...|+-.+..++..+++.|.++++++ ..++. +++++|+++|||+
T Consensus 390 rm~~~l~~s~~~~ate~v~~~lv~~G~~~~~Ah~~v~~~a~~~g~~V~~~~~~~~l~e~l~~~~~~~l~~eel~~~ldp~ 469 (503)
T 2j91_A 390 VIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPS 469 (503)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHCGGGHHHHTTHHHHTCGG
T ss_pred HHHHHHHhccChHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHhcCcccCCCHHHHHHhcCHH
Confidence 999999862233212224444555555555433 22222 5678999999999
Q ss_pred cccCC
Q 011379 481 KMIGP 485 (487)
Q Consensus 481 ~~~g~ 485 (487)
+|+|+
T Consensus 470 ~~~g~ 474 (503)
T 2j91_A 470 SFTGR 474 (503)
T ss_dssp GGSTT
T ss_pred HhCCc
Confidence 99997
No 23
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.8e-73 Score=604.84 Aligned_cols=401 Identities=15% Similarity=0.141 Sum_probs=321.8
Q ss_pred ccccccCccChHh-HHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHccccCCC
Q 011379 47 ILVPSDKLWGAQT-QRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG---LDPAIGKAIMQAAQEVAEGKLNDH 122 (487)
Q Consensus 47 ~~~p~~~~~g~~t-~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G---i~~~~a~~I~~a~~~v~~~~~~~~ 122 (487)
+..|.+.+|+.+. ++.+ |+ +.++++.|+++|.|+|.+++++| ||++++++|.++++++.
T Consensus 7 ~~spl~~ry~~~~~m~~~--fs--------~~~~~~~~~~~e~Ala~a~~~~Gl~~i~~~~~~~I~~~l~~i~------- 69 (478)
T 1yis_A 7 FESVLSTRYCKNSPLVSI--LS--------ETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFD------- 69 (478)
T ss_dssp CCCHHHHTTTTTCTHHHH--TS--------HHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHTTTCCC-------
T ss_pred CCCCcccccCChHHHHHH--cC--------chHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC-------
Confidence 6678887887777 9999 74 67999999999999999999999 48999999998765432
Q ss_pred CcccccccCcccccccchHHHHHHHHHHHhCccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011379 123 FPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHN 202 (487)
Q Consensus 123 f~~~~~~~~~~~~~~~~~~evi~~~~~e~lg~~~g~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~l~~~L~~L~~ 202 (487)
.+...+. ....+.+++.+++ .+.+.+| +.|+| || +|+||||+.+|+..|++++. +..|.+.|..|++
T Consensus 70 --~~~~~~~-e~~~~~DV~a~v~-~l~e~~g-~~~~~-iH------~G~TS~Di~~ta~~L~lr~~-l~~l~~~L~~L~~ 136 (478)
T 1yis_A 70 --WPFIRSE-ERKLKHDVMAHNH-AFGKLCP-TAAGI-IH------LGATSCFVQDNADLIAYRDS-IDHILKRFATVID 136 (478)
T ss_dssp --HHHHHHH-HHHSSCHHHHHHH-HHHHHCT-TTGGG-TT------TTCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred --HHHHhhH-HHhcCCcHHHHHH-HHHHhhh-hchhh-ee------CCCchhhhHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 1111100 0112344555565 3788888 66777 88 59999999999999998766 4799999999999
Q ss_pred HHHHHHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCC------CCCCCCch
Q 011379 203 SLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTG------LNTKKGFD 276 (487)
Q Consensus 203 ~L~~~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~------~~~~~~~~ 276 (487)
+|.++|++|+|++||||||+||||||||||||++|+++|.|+++||.++++++..+++|| ++||+ ++.|+...
T Consensus 137 ~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~rL~~~~~~l~~lg~gg-~~GT~a~~~~~f~~d~~~~ 215 (478)
T 1yis_A 137 RLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKG-ATGTQDSFLTLFAGDESKV 215 (478)
T ss_dssp HHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCT-TTSSCHHHHHHTTTCHHHH
T ss_pred HHHHHHHHcCCCeeecccCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhccchhhhcccCcchhhH
Confidence 999999999999999999999999999999999999999999999999999999999988 58998 55554445
Q ss_pred HHHHHHHHHHcCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcC--CCCCCCCCC
Q 011379 277 VKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIM 354 (487)
Q Consensus 277 ~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp--~~~~GSSiM 354 (487)
+.+.+++++.|||+. +.+|+. ++++||+++|++++|+.++++|+|||+||++|+| +||+.+| ++++|||||
T Consensus 216 ~~v~~~~a~~LG~~~-~~~~s~-~~~~rd~~~e~~~~l~~~a~~L~kia~Di~ll~s-----~~el~~p~~~~q~GSSiM 288 (478)
T 1yis_A 216 EALDELVTKKANFSN-RFLITG-QTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQA-----FGELLEPFEKDQIGSSAM 288 (478)
T ss_dssp HHHHHHHHHHTTCSC-BCSSCS-SSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTSEECC-----------
T ss_pred HHHHHHHHHHhCcCC-CCCccc-cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhheeccccCCCCccccC
Confidence 688899999999995 344554 7899999999999999999999999999999996 9999999 468999999
Q ss_pred CCCCChhhhHHHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHH
Q 011379 355 PGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434 (487)
Q Consensus 355 P~K~NP~~~E~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~~ 434 (487)
||||||+.+|.++++|++|+|++++++.....++||+|...|.+.++.++++..+.+++..++..|++||+||+++|+++
T Consensus 289 P~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~er~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~ 368 (478)
T 1yis_A 289 PYKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKI 368 (478)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSHHHHHHHHHTCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHhHHHHHHHhccCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHH
Confidence 99999999999999999999999888887888899999999999999999999999999999999999999999999999
Q ss_pred HHhhhcHHHHHHHHHHHHHcCCCHHHHHHH-------------------------cCC-CCHHHHhhcc-CcccccCC
Q 011379 435 LHEKIGYDNAAAVAKKAHKEGTTLKDAALK-------------------------LGV-LNSEEFDNLV-VPEKMIGP 485 (487)
Q Consensus 435 l~~~ig~~~A~~ia~~a~~~g~~~re~~~~-------------------------~~~-l~~eel~~~l-dP~~~~g~ 485 (487)
++...|+-.+..++..+++.|.++++++.. .+. +++++++++| ||++|+|+
T Consensus 369 l~~~~~~~~te~v~~~l~~~G~~~~~Ah~~v~~~a~~~~~~v~~~g~~~~~l~~~~~~~l~~~el~~~l~dp~~~~g~ 446 (478)
T 1yis_A 369 VEDEIAFLGLEKAMMMLTEEGVDRQQAHAVIRKTALEAKQLQATQKVDIRQTMADPFFDSVRDRVVGLVNNPINFTGR 446 (478)
T ss_dssp HHHHHHHHHHHHHHHHC---------------------------------CCCTTTTSTTTHHHHHHHHHCGGGGSTT
T ss_pred HHhCCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCCCCCCHHHHHHHHhCHHHHcCc
Confidence 987333422223455555666666554332 122 7899999999 99999997
No 24
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=100.00 E-value=8.4e-73 Score=581.20 Aligned_cols=342 Identities=19% Similarity=0.174 Sum_probs=291.5
Q ss_pred CccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccC
Q 011379 53 KLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 131 (487)
Q Consensus 53 ~~~g~~t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~~~~a~~I~~a~~~v~~~~~~~~f~~~~~~~~ 131 (487)
.||+.++++.+ |+ ++++|++|++||+|+|++|.++| ||++++++|.++|+++. |+++.++++
T Consensus 13 ~~~~~~~m~~~--fs--------~~~~i~~~~~ve~A~a~a~~~~G~i~~~~a~~I~~~~~~i~-------~~~~~~~~~ 75 (359)
T 2fel_A 13 GLFGDSEIIEL--FS--------AKADIDAMIRFETALAQAEAEASIFADDEAEAIVSGLSEFA-------ADMSALRHG 75 (359)
T ss_dssp HHHCCHHHHGG--GS--------HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCC-------CCHHHHHHH
T ss_pred cccCCHHHHHH--cC--------cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcc-------ccHHHHHhh
Confidence 47899999999 74 78999999999999999999999 99999999999998753 567777777
Q ss_pred cccccccchHHHHHHHHHHHhCccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011379 132 SGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEF 211 (487)
Q Consensus 132 ~~~~~~~~~~evi~~~~~e~lg~~~g~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~~l~~~L~~L~~~L~~~A~~~ 211 (487)
++++.+ ++++++.+ +.+++|++.|+ |||+|+||||++||+++|++++. +..|.+.|..|+++|.++|++|
T Consensus 76 ~~~~~~-~~~~~~~~-l~~~~g~~~~~-------~vH~G~SsnDv~~Ta~~l~lr~~-l~~l~~~L~~l~~~L~~~A~~~ 145 (359)
T 2fel_A 76 VAKDGV-VVPELIRQ-MRAAVAGQAAD-------KVHFGATSQDVIDTSLMLRLKMA-AEIIATRLGHLIDTLGDLASRD 145 (359)
T ss_dssp HHHHSS-SHHHHHHH-HHTTSCGGGGG-------GTTTTCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCC-cHHHHHHH-HHHHcCccccc-------hhcCCCCHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 766656 78887765 55677754444 45579999999999999998776 4799999999999999999999
Q ss_pred ccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCCCCchHHHHHHHHHHcCCCC
Q 011379 212 KDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPF 291 (487)
Q Consensus 212 ~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~~ 291 (487)
+|++||||||+||||||||||||++|+++|.|+++||++++++++.+|||| |+||+.+ .++|++.+.+++++.|||+.
T Consensus 146 ~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-avGT~~~-~~~~~~~~~~~~a~~LG~~~ 223 (359)
T 2fel_A 146 GHKPLTGYTRMQAAIGITVADRAAGWIAPLERHLLRLETFAQNGFALQFGG-AAGTLEK-LGDNAGAVRADLAKRLGLAD 223 (359)
T ss_dssp TTSEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSBCCCCC-TTSSCTT-TGGGHHHHHHHHHHHHTCBC
T ss_pred cCcEeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcH-HhccCcc-CcchHHHHHHHHHHHhCcCC
Confidence 999999999999999999999999999999999999999999999999999 8999754 45788999999999999998
Q ss_pred ccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCCCCCCCCCCCCChhhhHHHHHHHH
Q 011379 292 VTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCA 371 (487)
Q Consensus 292 ~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~~GSSiMP~K~NP~~~E~i~~~a~ 371 (487)
++ +|+++||+++|++++|+.++++|+|||+||++|+| +| ||+.+|.. +|||||||||||+.+|.++++|+
T Consensus 224 ~~-----~~~~~RD~~~e~~~~l~~~a~~L~kia~Dirll~s---~e-~Ei~~~~~-~GSS~MP~K~NP~~~E~i~~~a~ 293 (359)
T 2fel_A 224 RP-----QWHNQRDGIAEFANLLSLVTGTLGKFGQDIALMAE---IG-SEIRLSGG-GGSSAMPHKQNPVNAETLVTLAR 293 (359)
T ss_dssp CC-----CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HC-TTEEEC-------------CCHHHHHHHHHHH
T ss_pred Cc-----hHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CC-CeecCCCC-CCCccCCcccCCHHHHHHHHHHH
Confidence 54 36789999999999999999999999999999996 68 99999964 99999999999999999999999
Q ss_pred HhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHH
Q 011379 372 QVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434 (487)
Q Consensus 372 ~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~erm~~~ 434 (487)
++.|+..+.. ....+|+|++...+...|..++..+.+.+.++..+..++++|+||+++|..+
T Consensus 294 ~v~~~~~~~~-~~~~~~~er~~~~~~~e~~~lp~~~~~~~~~L~~~~~v~~~l~v~~~~m~~~ 355 (359)
T 2fel_A 294 FNAVQISALH-QSLVQEQERSGAGWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLGADESHH 355 (359)
T ss_dssp HHHHHHHHHH-HTTCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC-----
T ss_pred HHHHHHHHHH-HHhhccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHhCcc
Confidence 9999988865 4678889998888888888888888888888888899999999999999865
No 25
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=100.00 E-value=2.7e-66 Score=549.25 Aligned_cols=395 Identities=18% Similarity=0.165 Sum_probs=307.3
Q ss_pred cccCccChH--hHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CC------HHHHHHHHHHHHHHHccccC
Q 011379 50 PSDKLWGAQ--TQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LD------PAIGKAIMQAAQEVAEGKLN 120 (487)
Q Consensus 50 p~~~~~g~~--t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~G-i~------~~~a~~I~~a~~~v~~~~~~ 120 (487)
|-+.+|+.+ .++.+ |+ ++++++++++++.|+++++++.| || ++++++|.++++++..+.
T Consensus 14 ~~~gRy~~~~~~~~~~--fs--------d~~~~~~~l~ve~a~~~ala~~~gi~~ip~i~~~~~~~i~~~~~~~~~~d-- 81 (459)
T 3bhg_A 14 PIDGRYVNKTRALSPY--FS--------EFALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNESE-- 81 (459)
T ss_dssp TTTTTTHHHHGGGTTT--SS--------HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCCHHHHHHHHHHHHTCCHHH--
T ss_pred cccccccCChHHHHHH--cC--------HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhcccc--
Confidence 555577666 56566 74 68999999999999999999996 73 799999999886542110
Q ss_pred CCCcccccccCcccccccchHHHHHHHHHHHhCc-----cCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHH-HHH
Q 011379 121 DHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH-----KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNS-RLI 194 (487)
Q Consensus 121 ~~f~~~~~~~~~~~~~~~~~~evi~~~~~e~lg~-----~~g~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~-~l~ 194 (487)
+....... ...+.++ ..++..+.+.+|. +.|+| || +||||||++||+++|++++. +. .|.
T Consensus 82 ----~~~~~~~e-~~~~~Dv-~a~e~~l~e~~g~~~~~~~~~~~-iH------~g~SsnDv~~Ta~~L~lr~~-l~~~l~ 147 (459)
T 3bhg_A 82 ----AEKIKEFE-KQTNHDV-KAVEYYLQDKFQENEQLKSCVAF-IH------FACTSEDINNLAYALMIKQA-IAQVIQ 147 (459)
T ss_dssp ----HHHHHHHT-TTCSSHH-HHHHHHHHHHHTTSTTGGGGGGG-TT------TTCCHHHHHHHHHHHHHHHH-HHHTHH
T ss_pred ----HHHHHHHH-HhcCCCh-HHHHHHHHHHhcccccCchhhhh-hc------CCCCHHhHHHHHHHHHHHHH-HHHHHH
Confidence 10000000 1112334 4467888898982 34455 55 79999999999999998766 56 699
Q ss_pred HHHHHHHHHHHHHHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCCC-
Q 011379 195 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK- 273 (487)
Q Consensus 195 ~~L~~L~~~L~~~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~~- 273 (487)
+.|..|+++|.++|++|+|++||||||+||||||||||||++|+++|.|+++||.+++ .+++||||+|| ++...
T Consensus 148 ~~L~~l~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~----~~~~~~GAvGT-~~a~~~ 222 (459)
T 3bhg_A 148 PTIAEIMGSITLLGKQHADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVL----IPAKFNGAVGN-YNAHVA 222 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC----CEECCCCSSSS-CHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCEeeccccCccceechHHHHHHHHHHHHHHHHHHHHHHH----Hhhcccccccc-cccccc
Confidence 9999999999999999999999999999999999999999999999999999999877 46666779999 55321
Q ss_pred Cch----HHHHHHHHHHcCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCCC
Q 011379 274 GFD----VKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEP 349 (487)
Q Consensus 274 ~~~----~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~~ 349 (487)
.|+ +.+.+.+++.|||+..+.+| ++++||++++++++|+.++++|+|||+||++|+|+ |+.+...|++++
T Consensus 223 ~~~~~~~~~~~~~~~~~LGl~~~~~~~---~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~---~~~~e~~~~~~~ 296 (459)
T 3bhg_A 223 AYPEVDWRKHCANFVTSLGLSFNAYTT---QIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISL---GYFKQKTIAEEV 296 (459)
T ss_dssp HCTTSCHHHHHHHHHHHTTCEECSSCS---SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TSEEECC-----
T ss_pred ccCcccHHHHHHHHHHHhCCCCCcccc---chhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---cceehccCCCCC
Confidence 122 45778888889998655443 47899999999999999999999999999999984 564444556799
Q ss_pred CCCCCCCCCChhhhHHHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHH
Q 011379 350 GSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRE 429 (487)
Q Consensus 350 GSSiMP~K~NP~~~E~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~e 429 (487)
|||||||||||+.+|.+++.++.+.|....+.......+++++...+...++++..+.....++..+ ..|++||+||++
T Consensus 297 GSSiMP~K~NP~~~e~~~g~~~l~~~~~~~~~~~l~~~~~~rdl~~s~~~r~l~~~~~~~~~~l~~~-~~~l~gl~vn~e 375 (459)
T 3bhg_A 297 GSSTMPHKVNPIDFENAEGNLGLSNALFIHFANKLTQSRMQRDLSDSTVLRNLGVAFSYSLIAYHSV-AKGNDKLQINKS 375 (459)
T ss_dssp -CCSSCCCCCTHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCTHHHHHHTTHHHHHHHHHHHHHHH-HHHHTTEEECHH
T ss_pred CCCCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhhHHHHHHHHHHHHHHH-HHHHCcCEECHH
Confidence 9999999999999999999999999987776655444567777666655556677777777777776 679999999999
Q ss_pred HHHHHHHh--------------hhcHHHHHHHHHHHHHcCC-----CHHHHHHHcCCCC---HHHHhhccCcccccCC
Q 011379 430 RISKLLHE--------------KIGYDNAAAVAKKAHKEGT-----TLKDAALKLGVLN---SEEFDNLVVPEKMIGP 485 (487)
Q Consensus 430 rm~~~l~~--------------~ig~~~A~~ia~~a~~~g~-----~~re~~~~~~~l~---~eel~~~ldP~~~~g~ 485 (487)
+|+++++. ..||++||++++++++ |. +|+|.+.+.+ ++ .++|+ +|||.+|+|.
T Consensus 376 ~m~~~l~~~~~~~te~~~~~L~~~G~~~A~~iv~~~~~-~~~~~~~~l~~~l~~l~-~~~~~~~~l~-~~dp~~y~g~ 450 (459)
T 3bhg_A 376 ALQKDLSENWEVLAEAIQTVMRRYNEPNAYEQLKELTR-GQMIDAENLKKFIKTLS-IPEEAKAELM-KLTPETYTGL 450 (459)
T ss_dssp HHHHHHHTCGGGGHHHHHHHHHHTTCTTHHHHHHHHHT-TSCCCHHHHHHHHHTSC-SCHHHHHHHH-HCCGGGCCTT
T ss_pred HHHHHHHcCCchHHHHHHHHHHHhChHHHHHHHHHHHh-hcccccccHHHHHHhcC-CCchhHHHHH-hCCHHHHhCc
Confidence 99999977 2388899999999887 44 4777776633 32 36788 9999999996
No 26
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=100.00 E-value=1.9e-67 Score=558.96 Aligned_cols=398 Identities=19% Similarity=0.204 Sum_probs=305.5
Q ss_pred cccCccChH--hHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHc-C-CCHHHHHHHHHHHHHHHccccCCCCc-
Q 011379 50 PSDKLWGAQ--TQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEY-G-LDPAIGKAIMQAAQEVAEGKLNDHFP- 124 (487)
Q Consensus 50 p~~~~~g~~--t~rai~~f~~~~~~~~~~~~~i~a~~~ve~A~A~a~~e~-G-i~~~~a~~I~~a~~~v~~~~~~~~f~- 124 (487)
|-+.+|+.+ .++.+ |+ +..+++.+++++.|++.++++. | ||++.+++|.+ +.++.+....+.+.
T Consensus 10 ~~~gRy~~~~~~~~~~--~s--------d~~~~~~~i~ve~A~~~ala~~~gii~~~~~~~i~~-l~~~~~~~~~~d~~~ 78 (465)
T 2qga_B 10 PIDGRYKKACGELSAF--FS--------EHALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVEV-LNQIATNITDSDIAR 78 (465)
T ss_dssp TTTTTTHHHHGGGGGT--SS--------HHHHHHHHHHHHHHHHHHHHHHTSSSCCCCHHHHHH-HHHHHHCCCHHHHHH
T ss_pred cccccccCCcHHHHHH--hC--------HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHHHhhccccHHH
Confidence 555577665 46666 62 6899999999999999999999 9 99999999875 33332210000000
Q ss_pred ccccccCcccccccchHHHHHHHHHHHhCc-------cCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHH-HHHHH
Q 011379 125 LVVWQTGSGTQSNMNANEVIANRAAEILGH-------KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNS-RLIPN 196 (487)
Q Consensus 125 ~~~~~~~~~~~~~~~~~evi~~~~~e~lg~-------~~g~~~iH~~~hvn~G~SsnDi~~Ta~~l~~~~~~~~-~l~~~ 196 (487)
+..+... .+.++ -.++..+.+.+|. +.|+| || +|+|||||+||+++|++++. +. .|.+.
T Consensus 79 i~~~e~~----~~hDV-~a~e~~l~e~~g~~~~~~~~~~~~~-iH------~g~SsnDv~~Ta~~L~lr~~-l~~~l~~~ 145 (465)
T 2qga_B 79 VKAIEEE----TNHDV-KAVEYFVKEKLKNSKREDLLKIKEY-VH------YLCTSEDINNVAYATCLKAC-LNDVVIPC 145 (465)
T ss_dssp HHHHHHH----HSCHH-HHHHHHHHHHHHTSCCHHHHHHGGG-TT------TTCCHHHHHHHHHHHHHHHH-HHHTHHHH
T ss_pred HHHHhhc----cCCCh-HHHHHHHHHHhcccccccchhhhhh-cc------CCCChhhHHHHHHHHHHHHH-HHHHHHHH
Confidence 0001011 12334 3467788888872 45666 77 69999999999999998766 56 79999
Q ss_pred HHHHHHHHHHHHHHcccccccccccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCCCCC----
Q 011379 197 LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK---- 272 (487)
Q Consensus 197 L~~L~~~L~~~A~~~~d~~~~GrTH~Q~A~P~T~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGg~AvGT~~~~~---- 272 (487)
|..|+++|.++|++|+|++||||||+||||||||||||++|+++|.|+++||.+++ .+++||||+|| ++.+
T Consensus 146 L~~l~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~----~~~~~~GAvGT-~~a~~~~~ 220 (465)
T 2qga_B 146 LEKIMLKLKDLAVEYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVK----VCAKFNGAVGN-FNAHKVAS 220 (465)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHSC----CEECCCCTTSS-CHHHHHHC
T ss_pred HHHHHHHHHHHHHHccCcEeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHH----HhccccchhcC-cccccccc
Confidence 99999999999999999999999999999999999999999999999999998877 57777779999 5422
Q ss_pred CCch-HHHHHHHHHH-cCCCCccCCchhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccceEEcCCCCCC
Q 011379 273 KGFD-VKIASAVAEE-TSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPG 350 (487)
Q Consensus 273 ~~~~-~~v~~~la~~-LGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~kiA~Di~ll~S~pr~eigev~lp~~~~G 350 (487)
++.+ ..+.+.+++. |||+.++.+ +++++||++++++++|+.++++|+|||+||++|+|+ |+.+...|++++|
T Consensus 221 p~~d~~~~~~~~~~~~LGl~~~~~~---~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~---~~~~e~~~~~~~G 294 (465)
T 2qga_B 221 KDTDWVNTIGLFLKKHFNLTYSIYC---TQIQDHDYICELCDGLARANGTLIDLCVDIWLYISN---NLLKLKVKEKEVG 294 (465)
T ss_dssp TTCCHHHHHHHHHHHHHCCEECCCC---SSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TSEEEC-------
T ss_pred CcccHHHHHHHHHHHHhCCCCCCCc---cchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---cceeeeCCCCCCC
Confidence 2111 2455566655 999986544 468999999999999999999999999999999984 5655555678999
Q ss_pred CCCCCCCCChhhhHHHHHHHHHhhcchHHHHHhccccchhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHhhhccccCHHH
Q 011379 351 SSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRER 430 (487)
Q Consensus 351 SSiMP~K~NP~~~E~i~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~l~vn~er 430 (487)
||||||||||+.+|.+++.++.+.|+...+.......+++++...+...++++..+.....++..+ ..|++||+||+++
T Consensus 295 SSiMP~K~NP~~~e~~~g~~~~~~~~~~~~~~~l~~~~~erdl~~s~~~r~l~~~~~~~~~~l~~~-~~~l~~l~vn~~~ 373 (465)
T 2qga_B 295 SSTMPHKVNPIDFENAEGNLHIANAFFKLFSSKLPTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSV-LKGLNKIDIDRRN 373 (465)
T ss_dssp CCSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTBCTHHHHHHTTHHHHHHHHHHHHHHH-HHHHHHEEECHHH
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHccCEECHHH
Confidence 999999999999999999999999998777665545567777666655556667777777777776 5799999999999
Q ss_pred HHHHHHh--------------hhcHHHHHHHHHHHHHcCC-----CHHHHHHHcC-CCCH---HHHhhccCcccccCC
Q 011379 431 ISKLLHE--------------KIGYDNAAAVAKKAHKEGT-----TLKDAALKLG-VLNS---EEFDNLVVPEKMIGP 485 (487)
Q Consensus 431 m~~~l~~--------------~ig~~~A~~ia~~a~~~g~-----~~re~~~~~~-~l~~---eel~~~ldP~~~~g~ 485 (487)
|++|++. ..||++||++++++.+ |. +|++....+. .+++ ++|+ +|||++|+|+
T Consensus 374 m~~~l~~~~~~~ae~v~~~L~~~G~~~A~~iv~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~ldp~~y~G~ 449 (465)
T 2qga_B 374 LEEELNQNWSTLAEPIQIVMKRHNYVDAYEELKQFTR-GKVIDQKIMQEFIKTKCAFLPQDVVDQLL-ELTPATYTGY 449 (465)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHTTCSCHHHHHHHHHT-TSCCCHHHHHHHHHHHSTTSCHHHHHHHH-HCCGGGCCTT
T ss_pred HHHHHHcCCChHHHHHHHHHHHhChHHHHHHHHHHHh-hhhhccCCHHHHHHhchhcCCcchHHHHH-hcCHHHhCCc
Confidence 9999977 2388889999998885 33 4555555553 4787 8898 9999999996
No 27
>1fgl_B HIV-1 GAG protein; cyclophilin, binding protein for cyclosporin A, AIDS, isomer peptide complex; 1.80A {Human immunodeficiency virus type 1}
Probab=21.18 E-value=30 Score=21.10 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=12.3
Q ss_pred ccccccCccccchhh
Q 011379 218 GRTHTQDATPLTLGQ 232 (487)
Q Consensus 218 GrTH~Q~A~P~T~G~ 232 (487)
.|+|-|+|.|+.-|+
T Consensus 1 Dr~Hp~~agp~p~gq 15 (26)
T 1fgl_B 1 DRXHPVHAGPIAPGQ 15 (26)
T ss_pred CCcCcccCCCCCCCC
Confidence 378999999988775
Done!