RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 011379
(487 letters)
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 476 bits (1227), Expect = e-167
Identities = 312/459 (67%), Positives = 355/459 (77%), Gaps = 11/459 (2%)
Query: 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNM 95
SFR E D FG I VP+DK WGAQTQRS QNF IGG RERMP P+V AFG+LKK AA VN
Sbjct: 1 SFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNE 60
Query: 96 EYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 154
G LDP I KAI QAA EVA GKL+DHFPLVV+QTGSGTQSNMNANEVI+NRA EILG
Sbjct: 61 SLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGG 120
Query: 155 KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDI 214
K G K VHPN+H N+SQSSNDTFPTVMHIAA+++ + LIP L L N+L +KS EF I
Sbjct: 121 KIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHI 180
Query: 215 VKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 274
VKIGRTH QDATPLTLGQEFSGY QV+ GI RV L + LAQGGTAVGTGLNTK G
Sbjct: 181 VKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPG 240
Query: 275 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSG 334
FDVKIA +++ET L F TA N+FEALAAHDA VE SGALNT+A SL KIA D+R LGSG
Sbjct: 241 FDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSG 300
Query: 335 PRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVF 394
PRCG EL+LPENEPGSSIMPGKVNPTQ EALT VC QV+GN+ AIT GS G FELNVF
Sbjct: 301 PRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVF 360
Query: 395 KPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE----------KIGYDNA 444
KP++ + LL+S+RL+ DA+ SF +CV GI+AN RI +LL + KIGYD A
Sbjct: 361 KPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAA 420
Query: 445 AAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 483
+ VAK AHK+G TLK++AL+LGVL +EFD VVPE M+
Sbjct: 421 SKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML 459
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Length = 460
Score = 441 bits (1135), Expect = e-153
Identities = 257/459 (55%), Positives = 317/459 (69%), Gaps = 11/459 (2%)
Query: 38 REEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEY 97
R E+DT G + VP+DK WGAQTQRSL+NF IG +R RMP I+RA+G+LKK AA+ N+E
Sbjct: 1 RIERDTMGEVRVPADKYWGAQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLEL 60
Query: 98 G-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR 156
G L I KAI+QAA+EV +GK +DHFPLVV+QTGSGTQ+NMN NEVIANRA+EILG
Sbjct: 61 GELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKPL 120
Query: 157 GEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVK 216
G K HPNDHVNR QSSNDTFPT M++A A+ + RL P ++ L + +K+ F IVK
Sbjct: 121 GSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQIVK 180
Query: 217 IGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFD 276
+GRTH DA P+TLGQE + Q+K + V +Y LA GGTAVGTGLN F
Sbjct: 181 VGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPRFG 240
Query: 277 VKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPR 336
+A +AEET LPF AEN+F ALAAHD V GA+ T+A +LMKI NDVR L SGP
Sbjct: 241 ELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPY 300
Query: 337 CGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKP 396
G+GE+ +P NEPGSSIMPGKVNPTQ EALTMV +V GN + GS G+F+LNV+KP
Sbjct: 301 AGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKP 360
Query: 397 MIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE----------KIGYDNAAA 446
++A L S+ LL DA ASF+ + +GI+ N ERI + L + IGYD AA
Sbjct: 361 VMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDKAAE 420
Query: 447 VAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 485
+ KKA KE TLK AAL+LG L EEFD +VVP ++ P
Sbjct: 421 IVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKP 459
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 439 bits (1129), Expect = e-152
Identities = 272/457 (59%), Positives = 330/457 (72%), Gaps = 14/457 (3%)
Query: 38 REEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEY 97
R EKD+ G I VP+DKLWGAQTQRSL++F I E+ MP ++ A + K+ AAKVN +
Sbjct: 2 RSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEK--MPTSLIHALALTKRAAAKVNEDL 59
Query: 98 G-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR 156
G L AI QAA EV G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG R
Sbjct: 60 GLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVR 119
Query: 157 GE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIV 215
G + VHPND VN+SQSSND FPT MH+AA + +LIP LK L +L+ KS F DIV
Sbjct: 120 GMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIV 179
Query: 216 KIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGF 275
KIGRTH QDATPLTLGQE SG+ +++ + + LP + +LA GGTAVGTGLNT +
Sbjct: 180 KIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEY 239
Query: 276 DVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGP 335
++A +A T PFVTA NKFEALA DA V+ GAL +AASLMKIANDVR L SGP
Sbjct: 240 ARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGP 299
Query: 336 RCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFK 395
RCG+GE+ +PENEPGSSIMPGKVNPTQCEALTM+C QV+GN VAI +GG++G+FELNVF+
Sbjct: 300 RCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFR 359
Query: 396 PMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE----------KIGYDNAA 445
PM+ L S+RLL D SF K+C GI+ NRERI++LL+E IGYD AA
Sbjct: 360 PMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAA 419
Query: 446 AVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 482
+AKKAHKEG TLK AAL LG L+ EFD+ V PE+M
Sbjct: 420 EIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQM 456
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 373 bits (957), Expect = e-126
Identities = 188/461 (40%), Positives = 275/461 (59%), Gaps = 15/461 (3%)
Query: 38 REEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEY 97
R EKD G +P D +G QT R+ +NF I G R + ++++ GI+KK AA NME
Sbjct: 2 RIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYR--IHPELIKSLGIVKKSAALANMEV 59
Query: 98 G-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR 156
G LD +G+ I++AA EV EGK ND F + Q G+GT NMNANEVIANRA E++G ++
Sbjct: 60 GLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEK 119
Query: 157 GEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIV 215
G + PN HVN SQS+ND FPT HIA + ++LI K + K+ EF ++
Sbjct: 120 GNYSKISPNSHVNMSQSTNDAFPTATHIAV-LSLLNQLIETTKYMQQEFMKKADEFAGVI 178
Query: 216 KIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGF 275
K+GRTH QDA P+ LGQEF Y + I+R+ +Y + G TAVGTGLN +
Sbjct: 179 KMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEY 238
Query: 276 DVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGP 335
+ +A+ + P +A++ +A D + E S AL ++ KIAND+RL+ SGP
Sbjct: 239 ISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGP 298
Query: 336 RCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFK 395
R GL E++LP +PGSSIMPGKVNP E + V QV GN + IT G FELNV +
Sbjct: 299 RAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVME 358
Query: 396 PMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE----------KIGYDNAA 445
P++ L+ S+ ++ + SF +NC++GI+AN ER+ + + + +GY+ AA
Sbjct: 359 PVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETAA 418
Query: 446 AVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 486
+A++A+ G ++++ +K GVL E+ + ++ P +MI P
Sbjct: 419 KLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHPG 459
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 365 bits (938), Expect = e-123
Identities = 173/456 (37%), Positives = 255/456 (55%), Gaps = 14/456 (3%)
Query: 34 STSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKV 93
S + R E+D G VP+D +G T R+++NF I + VR ++KK AA
Sbjct: 2 SNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMA 61
Query: 94 NMEYG-LDPAIGKAIMQAAQEV-AEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEI 151
N E + ++ AI+ A EV GK D FP+ V+Q G+GT NMN NEV+AN E+
Sbjct: 62 NKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLEL 121
Query: 152 LGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVE 210
+GH++GE + ++PNDHVN+ QS+ND +PT IA +L+ + L K+VE
Sbjct: 122 MGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLI-KLVDAINQLREGFERKAVE 180
Query: 211 FKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLN 270
F+DI+K+GRT QDA P+TLGQEF ++ +K + + + ++ G TA+GTGLN
Sbjct: 181 FQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLN 240
Query: 271 TKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRL 330
T K + +AE T P V AE+ EA + A+V GAL +A + KI ND+RL
Sbjct: 241 TPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRL 300
Query: 331 LGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFE 390
L SGPR GL E+ LPE + GSSIMP KVNP E + VC +VIGN +T+ G +
Sbjct: 301 LSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQ 360
Query: 391 LNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE----------KIG 440
LNV +P+I + S+ +L +A + + C+ GI AN+E ++ IG
Sbjct: 361 LNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIG 420
Query: 441 YDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNL 476
+ N V K + G ++++ L+ G+L E D++
Sbjct: 421 HHNGDIVGKICAETGKSVREVVLERGLLTEAELDDI 456
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 173 bits (438), Expect = 1e-49
Identities = 71/427 (16%), Positives = 138/427 (32%), Gaps = 57/427 (13%)
Query: 76 PEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGT 134
E +A+ ++ A + E G P + I + A E + + T
Sbjct: 8 EENRFKAWLEVEILACEAWAELGDIPKEDVQKIRENASFDIER---------INEIEQET 58
Query: 135 QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 194
+ ++ A E + V+ +S D T + + L
Sbjct: 59 RHDVVAFT-----------RAVSETLGEERKWVHYGLTSTDVVDTALSYLIKQANSILL- 106
Query: 195 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPR 254
+L+ L +K+ E K V +GRTH A P T G + + + ++K ++R
Sbjct: 107 QDLENFVEILKNKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWYEEMKRNLERFKQAAS- 165
Query: 255 MYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGAL 314
+ + AVGT N + + + D A+
Sbjct: 166 GVEFGKMSGAVGTYANINPFVESYVCE-------KLGLQPAPISTQTLQRDRHAHYMAAI 218
Query: 315 NTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVI 374
+ +A S+ K A ++R L + E + + GSS MP K NP E +T + +
Sbjct: 219 SLIATSIEKFAVEIRGLQKSETREVEEF-FAKGQKGSSAMPHKRNPIGSENMTGLARVIR 277
Query: 375 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434
G+ + E ++ +L + + + N V+ + E + +
Sbjct: 278 GHMLTAY-ENVPLWHERDISHSSAERIILPDATIALNYMLNRFGNIVKNLTVFPENMKRN 336
Query: 435 LHE---------------------KIGYDNAAAVAKKAHKEGTTLKDAALK----LGVLN 469
+ + YD A +A ++ K L+
Sbjct: 337 MDRTLGLIYSQRVLLALIDKGMAREEAYDVVQPRAMEAWEKQVAFKSLVEADETISSRLS 396
Query: 470 SEEFDNL 476
+EE ++
Sbjct: 397 AEEIEDC 403
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 155 bits (392), Expect = 7e-43
Identities = 83/436 (19%), Positives = 141/436 (32%), Gaps = 45/436 (10%)
Query: 76 PEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQ 135
++ + A+ GL P A + + + T
Sbjct: 19 DRGRLQGMLDFEAALARAEASAGLVPH------SAVAAIEAACQAERYDTGALANAIATA 72
Query: 136 SNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIP 195
N V A + +V+ +S D T + + + +
Sbjct: 73 GNSAIPLVKALGKVI------ATGVPEAERYVHLGATSQDAMDTGLVLQLRDALD-LIEA 125
Query: 196 NLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRM 255
+L L ++L ++++ D +GRT Q ATP+TLG + +G + R+ PR+
Sbjct: 126 DLGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRL 185
Query: 256 YQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALN 315
L GG + K +A A+AE+ L D VE + L
Sbjct: 186 LVLQFGGASGSLAALGSKAMP--VAEALAEQLKLTLPEQPWHT----QRDRLVEFASVLG 239
Query: 316 TVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIG 375
VA SL K D+ LL + E + GSS MP K NP L +V G
Sbjct: 240 LVAGSLGKFGRDISLLMQTEAGEVFEPS-APGKGGSSTMPHKRNPVGAAVLIGAATRVPG 298
Query: 376 NHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLL 435
+ H L L+ + + G++ + R+ + L
Sbjct: 299 LLSTLFAAMPQEHERSLGLWHAEWETLPDICCLV-SGALRQAQVIAEGMEVDAARMRRNL 357
Query: 436 H----------------EKIGYDNAAAV----AKKAHKEGTTLKDAALK----LGVLNSE 471
+++G D A + ++A E L+ L+ E
Sbjct: 358 DLTQGLVLAEAVSIVLAQRLGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGE 417
Query: 472 EFDNLVVPEKMIGPSD 487
E D L+ P +G +
Sbjct: 418 ELDRLLDPAHYLGQAR 433
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 141 bits (356), Expect = 7e-38
Identities = 71/437 (16%), Positives = 133/437 (30%), Gaps = 55/437 (12%)
Query: 76 PEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQ 135
E R + ++ + E G+ P + + N + +++
Sbjct: 15 EEAKYRRWLEVELAVTRAYEELGMIPK------GVTERIRN---NAKIDVELFKKIEEK- 64
Query: 136 SNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIP 195
++V+A G I + + +S+D T +A L
Sbjct: 65 ---TNHDVVAFV------EGIGSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLES 115
Query: 196 NLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRM 255
+ + L + +K IGRTH A P + G + G+ +++K + R+ + +
Sbjct: 116 LKEF-CDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEV 174
Query: 256 YQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALN 315
G + + S + E + D L
Sbjct: 175 SYGKISGAVGNYANVPPEVE--------EKALSYLGLKPEPVSTQVVPRDRHAFYLSTLA 226
Query: 316 TVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIG 375
VAA + +IA ++R L + E + + GSS MP K NP CE LT + +
Sbjct: 227 IVAAGIERIAVEIRHLQRTEVLEVEE-PFRKGQRGSSAMPHKKNPITCERLTGLSRMMRA 285
Query: 376 NHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLL 435
++ E ++ + + N VR ++ N ER+ K +
Sbjct: 286 YVDP-SLENIALWHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNI 344
Query: 436 HEKIG---------------------YDNAAAVAKKAHKEGTTLKDAALK----LGVLNS 470
G YD A K + L+ ++
Sbjct: 345 DLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLLEDEEVKKLVTK 404
Query: 471 EEFDNLVVPEKMIGPSD 487
EE + L + D
Sbjct: 405 EELEELFDISYYLKHVD 421
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 137 bits (345), Expect = 2e-36
Identities = 77/433 (17%), Positives = 143/433 (33%), Gaps = 45/433 (10%)
Query: 80 VRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNM 138
V + A+ + G+ P I +AA+ D T +G N+
Sbjct: 22 VSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAI-----DKIDFDALATATGLAGNI 76
Query: 139 NANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLK 198
V A + +V+ +S D T + + + + ++
Sbjct: 77 AIPFVKQLTAIVKDADE------DAARYVHWGATSQDILDTACIL-QCRDALAIVQNQVQ 129
Query: 199 VLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQL 258
+ + S++ ++ V +GRT Q A P+TLG + + + + K +DR+ R+
Sbjct: 130 QCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVA 189
Query: 259 AQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVA 318
GG +G V E + + D VE + L +
Sbjct: 190 QLGGAVGSLASLQDQGS------IVVEAYAKQLKLGQTACTWHGERDRIVEIASVLGIIT 243
Query: 319 ASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHV 378
++ K+A D L+ + E + GSS MP K NP ++ +V
Sbjct: 244 GNVGKMARDWSLMMQTEIAEVFEPT-AKGRGGSSTMPHKRNPVAAASVLAAANRVPALMS 302
Query: 379 AITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLH-- 436
+I E ++ L + L + + ++G++ N E + + +
Sbjct: 303 SIYQ-SMVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECT 361
Query: 437 --------------EKIGYDNAAAV----AKKAHKEGTTLKDAALKL----GVLNSEEFD 474
+G NA V K A E LKD ++ N + D
Sbjct: 362 HGLIMAEAVMMALAPHMGRLNAHHVVEAACKTAVAEQKHLKDIISQVDEVKQYFNPSQLD 421
Query: 475 NLVVPEKMIGPSD 487
+ PE +G
Sbjct: 422 EIFKPESYLGNIQ 434
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 459
Score = 136 bits (343), Expect = 7e-36
Identities = 74/460 (16%), Positives = 137/460 (29%), Gaps = 61/460 (13%)
Query: 53 KLWG----AQTQRSLQNF--DIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGK 105
KLWG ++ F I +R + K ++ + G L A
Sbjct: 2 KLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDV-----QGSKAYSRGLEKAGLLTKAEMD 56
Query: 106 AIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPND 165
I+ +VAE F L T ANE E I
Sbjct: 57 QILHGLDKVAEEWAQGTFKLNSNDEDIHT-----ANERRLK-----------ELIGATAG 100
Query: 166 HVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDA 225
++ +S ND T + + +T S L L L ++ ++ +D++ G TH Q A
Sbjct: 101 KLHTGRSRNDQVVTDLRLWM-RQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRA 159
Query: 226 TPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAE 285
P+ + + +R++ R+ L G A+ ++
Sbjct: 160 QPIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIAGNPLGVDRELLRAELNFGA 219
Query: 286 ETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP 345
T N +A + D E + L ++A D+ L + +
Sbjct: 220 IT-------LNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFS--FVQLSD 270
Query: 346 ENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHS 405
GSS+MP K NP E + +V G + + N +
Sbjct: 271 AYSTGSSLMPRKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPSTYNKDLQEDKEAVFEV 330
Query: 406 LRLLGDASASFEKNCVRGIQANRERISKLLHE------------------KIGYDNAAAV 447
+ + +Q ++E + + L + ++ +
Sbjct: 331 SDTMSAVL-QVATGVISTLQIHQENMGQALSPDMLATDLAYYLVRKGMPFRQAHEASGKA 389
Query: 448 AKKAHKEGTTLKDAAL----KLGVLNSEEFDNLVVPEKMI 483
A +G L +L + L S + + +
Sbjct: 390 VFMAETKGVALNQLSLQELQTISPLFSGDVICVWDYRHSV 429
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 128 bits (321), Expect = 7e-33
Identities = 65/417 (15%), Positives = 125/417 (29%), Gaps = 50/417 (11%)
Query: 91 AKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAA 149
+K + G L + +A + E + +A ++ +
Sbjct: 39 SKALVTVGVLTAEEQAQLEEALNVLLED----------VRARPQQILESDAEDIHSWVEG 88
Query: 150 EILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 209
+++ + ++ +S ND T + + + L N + L ++L +
Sbjct: 89 KLIDK-----VGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTAN-RQLQSALVETAQ 142
Query: 210 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLA-QGGTAVGTG 268
+D V G TH Q A P+T Y + R+ L R+ G GT
Sbjct: 143 NNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTA 202
Query: 269 LNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDV 328
+ +A T N ++++ D +E A L + A D+
Sbjct: 203 YEIDREQ-------LAGWLGFASATR-NSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDL 254
Query: 329 RLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGH 388
+G + GSS+MP K NP E + C +V G + +
Sbjct: 255 IFFNTGEAGFVELS--DRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLP 312
Query: 389 FELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS--------------KL 434
N GL +L D L
Sbjct: 313 LAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYL 372
Query: 435 LHEKI----GYDNAAAVAKKAHKEGTTLKDAAL----KLGVLNSEEFDNLVVPEKMI 483
+ + + + +A ++G L+D L K + E+ ++ + +
Sbjct: 373 VAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCL 429
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Domestic duck (Anas platyrhynchos), delta-crystallin
[TaxId: 8839]}
Length = 449
Score = 122 bits (306), Expect = 6e-31
Identities = 64/415 (15%), Positives = 131/415 (31%), Gaps = 48/415 (11%)
Query: 91 AKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAA 149
AK + G L + I+ ++++E F + ++E I A
Sbjct: 30 AKALEKAGILTKTELEKILSGLEKISEEWSKGVFVV------------KQSDEDIHT-AN 76
Query: 150 EILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 209
E + E I ++ +S ND T + + + S + +L L +L ++
Sbjct: 77 E---RRLKELIGDIAGKLHTGRSRNDQVVTDLKLFM-KNSLSIISTHLLQLIKTLVERAA 132
Query: 210 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGL 269
D++ G H Q A P+ Q + + +R+ R+ L G G
Sbjct: 133 IEIDVILPGYDHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLG---SGALA 189
Query: 270 NTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVR 329
D + + + N +A++ D VE + L K+A D+
Sbjct: 190 GNPLDIDRE----MLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLI 245
Query: 330 LLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHF 389
+ + + GSS+MP K NP E + +V G +I +
Sbjct: 246 IYSTSEFGF--LTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPS 303
Query: 390 ELNVFKPMIASGLLHS-------LRLLGDASASFEKNCVRGIQANRER----------IS 432
N + L++ ++ + + +A +
Sbjct: 304 TYNKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVR 363
Query: 433 KLLHEKIGYDNAAAVAKKAHKEGTTLKDAAL----KLGVLNSEEFDNLVVPEKMI 483
K + + + + A +G T+ +L + S + + +
Sbjct: 364 KGVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSV 418
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 402
Score = 113 bits (283), Expect = 4e-28
Identities = 67/411 (16%), Positives = 135/411 (32%), Gaps = 58/411 (14%)
Query: 76 PEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGT 134
E I+ A+ +++ E G+ + + +A+ E V++ T
Sbjct: 20 NEAIINAYLEVERALVCALEELGVAERGCCEKVNKASVSADE----------VYRLERET 69
Query: 135 QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 194
++ + ++ + +V+ +SND T + +
Sbjct: 70 GHDILSLVLLLEQ-------------KSGCRYVHYGATSNDIIDTAWALLIRRALAAVKE 116
Query: 195 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPR 254
+ + L S + ++K + +GRTH Q A P+TLG +F+ Y ++ + L
Sbjct: 117 KARA-VGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYYELYIACRQ--LALAE 173
Query: 255 MYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGAL 314
+ A+ G AVGT + + + +A ++F + AL
Sbjct: 174 EFIRAKIGGAVGTMASWGELGLEVRR----RVAERLGLPHHVITTQVAPRESFAVLASAL 229
Query: 315 NTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVI 374
+AA ++A ++R L + E GSS MP K NPT E + + V
Sbjct: 230 ALMAAVFERLAVEIRELSRPEIG-----EVVEGGGGSSAMPHKANPTASERIVSLARYVR 284
Query: 375 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434
E ++ + L D + ++ + + ERI++
Sbjct: 285 ALTHVAF-ENVALWHERDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITEN 343
Query: 435 LHE---------------------KIGYDNAAAVAKKAHKEGTTLKDAALK 464
L + Y A V + + ++
Sbjct: 344 LQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWPVERLIE 394
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 29.5 bits (64), Expect = 0.91
Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 15/101 (14%)
Query: 97 YGLDPAIGKAIMQAAQ------------EVAEGKLNDHF---PLVVWQTGSGTQSNMNAN 141
G+ P I + + A + + V GTQ+N+ A
Sbjct: 10 VGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIAC 69
Query: 142 EVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMH 182
+ ++ + G H + + T P
Sbjct: 70 SLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDG 110
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 29.0 bits (63), Expect = 1.1
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 14/84 (16%)
Query: 97 YGLDPAIGKAIMQAA------------QEVAEGKLNDHF--PLVVWQTGSGTQSNMNANE 142
G P + +A+++ + + K + F + V+ +GT +N
Sbjct: 13 AGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLS 72
Query: 143 VIANRAAEILGHKRGEKIVHPNDH 166
+ I H
Sbjct: 73 AMTPPWGNIYCHPASHINNDECGA 96
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 28.1 bits (61), Expect = 2.8
Identities = 10/69 (14%), Positives = 22/69 (31%)
Query: 97 YGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR 156
+ P G A+ + +G + VV T G + + + +N ++
Sbjct: 390 MFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFS 449
Query: 157 GEKIVHPND 165
+ D
Sbjct: 450 NPPVDVKAD 458
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase,
N-terminal domain {North american leech (Macrobdella
decora) [TaxId: 6405]}
Length = 196
Score = 26.0 bits (56), Expect = 7.7
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 376 NHVAITVGGSNGHFELNVFKPMIASG 401
N VA+ +N L ++A+
Sbjct: 111 NTVALKADAANKQCRLFANGELLATL 136
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.382
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,703,447
Number of extensions: 76509
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 18
Length of query: 487
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 398
Effective length of database: 1,185,626
Effective search space: 471879148
Effective search space used: 471879148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.6 bits)