BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011381
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 504 bits (1298), Expect = e-143, Method: Compositional matrix adjust.
Identities = 257/469 (54%), Positives = 320/469 (68%), Gaps = 9/469 (1%)
Query: 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSI 72
+VA++P+PG+GHLIPLVE AKRLVH + VT I G G + R VL+SLP+SI
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIA----GEGPPSKAQRTVLDSLPSSI 63
Query: 73 STIFLPPVSFDDLPDDFQIEXXXXXXXXXXXXXXXDALKVLAESTRL-VALVVDPFGSAA 131
S++FLPPV DL +IE E RL ALVVD FG+ A
Sbjct: 64 SSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDA 123
Query: 132 FDVANEVGVPAYVFFTTTAMALSFLFHLPELDVKFSCEYRDMPEPVQLPGCVPVHGRDFA 191
FDVA E VP Y+F+ TTA LSF HLP+LD SCE+R++ EP+ LPGCVPV G+DF
Sbjct: 124 FDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCVPVAGKDFL 183
Query: 192 DGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEGESSFKPPPVYPVGP 251
D Q RK++AY++LL +K+Y A GI+VN+F ELE KAL E PPVYPVGP
Sbjct: 184 DPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQE--PGLDKPPVYPVGP 241
Query: 252 LIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRF 311
L+ G + S ECLKWLD QP SVL+V FGSGGTL+ EQLNELALGL S QRF
Sbjct: 242 LVNIGKQEAKQTEES-ECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRF 300
Query: 312 LWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTG 371
LWV +SP AN++YF S DPL FLP GFL+RTK G V+P WAPQAQVL+H STG
Sbjct: 301 LWVIRSP-SGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTG 359
Query: 372 GFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDI 431
GFL+HCGWNS LES+V G+P+IAWPLY+EQKMNAVLL++D++ + R + ++GLV RE++
Sbjct: 360 GFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEV 419
Query: 432 ANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWK 480
A KGL++GEEGK +R KM+ LK+AA L DG+STK+L+ +A WK
Sbjct: 420 ARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWK 468
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 158/472 (33%), Positives = 240/472 (50%), Gaps = 42/472 (8%)
Query: 17 VPTPGIGHLIPLVELAKRLV-HQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTI 75
+P PGIGHL +E AK L H N +T+F G + I+ VL S P I I
Sbjct: 15 IPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFP-GMPFADSYIKSVLASQP-QIQLI 72
Query: 76 FLPPVSFDDLPDDF--QIEXXXXXXXXXXXXXXXDALKVLAESTRLVALVVDPFGSAAFD 133
LP V + P + E +K + S ++V LV+D F + D
Sbjct: 73 DLPEV--EPPPQELLKSPEFYILTFLESLIPHVKATIKTIL-SNKVVGLVLDFFCVSMID 129
Query: 134 VANEVGVPAYVFFTTTAMALSFLFHLPELDVK--FSCEYRDMPEPVQLPGCVPVHGRDFA 191
V NE G+P+Y+F T+ LS + L ++ F RD + + +PG +
Sbjct: 130 VGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDH-QLLNIPGISNQVPSNVL 188
Query: 192 DGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEGESSFKPPPVYPVGP 251
K+ Y ++++ GI+VN+F +LE AL + + K PP+Y VGP
Sbjct: 189 PDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDE--KIPPIYAVGP 246
Query: 252 LIQTGSNNETNNDRSLE--CLKWLDEQPSESVLFVCFGSGG-TLSQEQLNELALGLEMSG 308
L+ D++ LKWLDEQP +SV+F+CFGS G + Q+ E+ALGL+ SG
Sbjct: 247 LLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSG 306
Query: 309 QRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLD--RTKGVGLVVPSWAPQAQVLS 366
RFLW +A F P+GFL+ +G G++ WAPQ +VL+
Sbjct: 307 VRFLW------SNSAEKKVF------------PEGFLEWMELEGKGMIC-GWAPQVEVLA 347
Query: 367 HGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE---N 423
H + GGF+SHCGWNSILES+ GVPI+ WP+Y+EQ++NA L + V ++V+ +
Sbjct: 348 HKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGS 407
Query: 424 GLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQL 475
+V E+I K L+ ++ ++ KK++ +K+ + NA+ GSS S+ +L
Sbjct: 408 DVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKL 457
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 158/472 (33%), Positives = 240/472 (50%), Gaps = 42/472 (8%)
Query: 17 VPTPGIGHLIPLVELAKRLV-HQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTI 75
+P PGIGHL +E AK L H N +T+F G + I+ VL S P I I
Sbjct: 15 IPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFP-GMPFADSYIKSVLASQP-QIQLI 72
Query: 76 FLPPVSFDDLPDDF--QIEXXXXXXXXXXXXXXXDALKVLAESTRLVALVVDPFGSAAFD 133
LP V + P + E +K + S ++V LV+D F + D
Sbjct: 73 DLPEV--EPPPQELLKSPEFYILTFLESLIPHVKATIKTIL-SNKVVGLVLDFFCVSMID 129
Query: 134 VANEVGVPAYVFFTTTAMALSFLFHLPELDVK--FSCEYRDMPEPVQLPGCVPVHGRDFA 191
V NE G+P+Y+F T+ LS + L ++ F RD + + +PG +
Sbjct: 130 VGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDH-QLLNIPGISNQVPSNVL 188
Query: 192 DGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEGESSFKPPPVYPVGP 251
K+ Y ++++ GI+VN+F +LE AL + + K PP+Y VGP
Sbjct: 189 PDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDE--KIPPIYAVGP 246
Query: 252 LIQTGSNNETNNDRSLE--CLKWLDEQPSESVLFVCFGSGG-TLSQEQLNELALGLEMSG 308
L+ D++ LKWLDEQP +SV+F+CFGS G + Q+ E+ALGL+ SG
Sbjct: 247 LLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSG 306
Query: 309 QRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLD--RTKGVGLVVPSWAPQAQVLS 366
RFLW +A F P+GFL+ +G G++ WAPQ +VL+
Sbjct: 307 VRFLW------SNSAEKKVF------------PEGFLEWMELEGKGMIC-GWAPQVEVLA 347
Query: 367 HGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE---N 423
H + GGF+SHCGWNSILES+ GVPI+ WP+Y+EQ++NA L + V ++V+ +
Sbjct: 348 HKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGS 407
Query: 424 GLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQL 475
+V E+I K L+ ++ ++ KK++ +K+ + NA+ GSS S+ +L
Sbjct: 408 DVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKL 457
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 122/394 (30%), Positives = 192/394 (48%), Gaps = 68/394 (17%)
Query: 113 LAESTRLVA-LVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPELDVKFSC--- 168
+AE+ R V+ LV D F A D+A E+GV F+T +LS ++ E+ K
Sbjct: 106 VAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGI 165
Query: 169 EYRDMPEPVQLPGCVPVHGRDFADG--FQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMEL 226
+ R+ +PG V RD +G F + R L + A + +NSF EL
Sbjct: 166 QGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEEL 225
Query: 227 E----------------TGPFKALMEGESSFKPPPVYPVGPLIQTGSNNETNNDRSLECL 270
+ GPF + PPPV P N T CL
Sbjct: 226 DDSLTNDLKSKLKTYLNIGPFNLI-------TPPPVVP----------NTTG------CL 262
Query: 271 KWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSV 330
+WL E+ SV+++ FG+ T ++ L+ LE S F+W
Sbjct: 263 QWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIW----------------- 305
Query: 331 QSMKDPLDF-LPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHG 389
S++D LP+GFL++T+G G+VVP WAPQA+VL+H + G F++HCGWNS+ ES+ G
Sbjct: 306 -SLRDKARVHLPEGFLEKTRGYGMVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGG 363
Query: 390 VPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRK 449
VP+I P + +Q++N ++ D L++ R+ E G+ + + + ++ E+GK LR+
Sbjct: 364 VPLICRPFFGDQRLNGRMVEDVLEIGVRI---EGGVFTKSGLMSCFDQILSQEKGKKLRE 420
Query: 450 KMRALKDAAANALSPDGSSTKSLAQLARIWKNPE 483
+RAL++ A A+ P GSST++ L + P+
Sbjct: 421 NLRALRETADRAVGPKGSSTENFITLVDLVSKPK 454
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 131/502 (26%), Positives = 216/502 (43%), Gaps = 69/502 (13%)
Query: 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPT 70
+ +V M+P P GH+ PL +LAK L+H F +T + R + P
Sbjct: 8 KPHVVMIPYPVQGHINPLFKLAK-LLHLRGFHITF--------VNTEYNHKRLLKSRGPK 58
Query: 71 SISTIFLPPVSFDDLPDDF-----------QIEXXXXXXXXXXXXXXXDALKVLAESTRL 119
+ +F+ +PD + + L L ST +
Sbjct: 59 AFDG--FTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNV 116
Query: 120 ---VALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPELDVKFSCEYRDMPEP 176
LV D S A E +P ++F+++A +L + H + ++D
Sbjct: 117 PPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYL 176
Query: 177 VQ---------LPGCVPVHGRDFADGFQQRK--NEAYRFLLSFSKQYLLAAGIMVNSFME 225
+PG +D D + + F + + + I++N+F E
Sbjct: 177 TNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNE 236
Query: 226 LETGPFKALMEGESSFKPPPVYPVGPL----IQTGSNNETNN-DRSL-----ECLKWLDE 275
LE+ AL S P +YP+GPL QT ++ ++ D +L ECL WL+
Sbjct: 237 LESDVINAL-----SSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLES 291
Query: 276 QPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKD 335
+ SV++V FGS ++ EQL E A GL + FLW+ + P + FS +
Sbjct: 292 KEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR-PDLVIGGSVIFSSE---- 346
Query: 336 PLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAW 395
F + GL+ SW PQ +VL+H S GGFL+HCGWNS ESI GVP++ W
Sbjct: 347 --------FTNEIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCW 397
Query: 396 PLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALK 455
P +++Q + + ++ ++ + N V RE++A +I G++GK +++K LK
Sbjct: 398 PFFADQPTDCRFICNEWEIGMEIDTN----VKREELAKLINEVIAGDKGKKMKQKAMELK 453
Query: 456 DAAANALSPDGSSTKSLAQLAR 477
A P G S +L ++ +
Sbjct: 454 KKAEENTRPGGCSYMNLNKVIK 475
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 185/376 (49%), Gaps = 41/376 (10%)
Query: 111 KVLAESTR-LVALVVDPFGSAAFDVANEVG---VPAYVFFTTTAMALSFLFHLPELDVK- 165
+ +AE+ + + LV D F D+A E+ VP + TA S L H+ ++
Sbjct: 109 EAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLW-----TAGPHSLLTHVYTDLIRE 163
Query: 166 --FSCEYRDMPEPVQLPGCVPVHGRDFADGFQQRKNEAYRFLL-SFSKQYLLAAGIMVNS 222
S E D+ LPG + D +G + + + +L + A + +NS
Sbjct: 164 KTGSKEVHDVKSIDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINS 223
Query: 223 FMELETGPFKALMEGESSFKPPPVYPVGPLIQTGSNNETNNDRSLECLKWLDEQPSESVL 282
F + L+E E + K + VGP T + +++ CL+WLD+ + SV+
Sbjct: 224 FATIH-----PLIENELNSKFKLLLNVGPFNLTTPQRKVSDEHG--CLEWLDQHENSSVV 276
Query: 283 FVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPK 342
++ FGS T +L LA LE G F+W + DP + LPK
Sbjct: 277 YISFGSVVTPPPHELTALAESLEECGFPFIWSFRG-----------------DPKEKLPK 319
Query: 343 GFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQK 402
GFL+RTK G +V +WAPQ ++L H S G FL+H GWNS+LE IV GVP+I+ P + +Q
Sbjct: 320 GFLERTKTKGKIV-AWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQG 378
Query: 403 MNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANAL 462
+N +L L++ V +NG++ +E I + + E+G ++R+K+ LK++A A+
Sbjct: 379 LNTILTESVLEIGVGV---DNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAV 435
Query: 463 SPDGSSTKSLAQLARI 478
+G+S L +I
Sbjct: 436 EQNGTSAMDFTTLIQI 451
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 320 EEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGW 379
EE AN ++ + + + G T G+ + W PQ +L H T F++H G
Sbjct: 37 EERANVIASALAQIPQKVLWRFDGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGA 96
Query: 380 NSILESIVHGVPIIAWPLYSEQKMN 404
N I E+I HG+P + PL+++Q N
Sbjct: 97 NGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 355 VPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNA 405
V W PQ +L+ S F++H G S +E++ + VP++A P +EQ MNA
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNA 357
>pdb|3QIU|D Chain D, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|D Chain D, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
pdb|3QJH|B Chain B, The Crystal Structure Of The 5c.C7 Tcr
pdb|3QJH|D Chain D, The Crystal Structure Of The 5c.C7 Tcr
Length = 243
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 182 CVPVHGRDFADGFQQRKNEAYRFLLSFSKQYLL 214
C+P G +QQ KN ++FL++F Q +L
Sbjct: 22 CIPEKGHPVVFWYQQNKNNEFKFLINFQNQEVL 54
>pdb|3QJF|B Chain B, Crystal Structure Of The 2b4 Tcr
pdb|3QJF|D Chain D, Crystal Structure Of The 2b4 Tcr
Length = 244
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 182 CVPVHGRDFADGFQQRKNEAYRFLLSFSKQYLL 214
C+P G +QQ KN ++FL++F Q +L
Sbjct: 23 CIPEKGHPVVFWYQQNKNNEFKFLINFQNQEVL 55
>pdb|3QIB|D Chain D, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
Length = 270
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 182 CVPVHGRDFADGFQQRKNEAYRFLLSFSKQYLL 214
C+P G +QQ KN ++FL++F Q +L
Sbjct: 49 CIPEKGHPVVFWYQQNKNNEFKFLINFQNQEVL 81
>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
Length = 636
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 266 SLECLKWLDEQPSESVLFVCFGSGGTLSQ 294
SLE KWL E P S++FV + + G+L +
Sbjct: 515 SLEYFKWLCEDPDNSLVFVGYQAEGSLGR 543
>pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit
Length = 716
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 400 EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIAN 433
+Q MN + T DL+ S+R+ +N GL GR + N
Sbjct: 283 DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKN 316
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 355 VPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLL 408
V W PQ +L F++H G E + P+IA P +Q NA +L
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML 338
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora
Echinospora Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora
Echinospora Determined In Space Group I222
Length = 398
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 14 VAMVPTPGIGHLIPLVELA 32
V V +PGIGHL PL++LA
Sbjct: 23 VLFVSSPGIGHLFPLIQLA 41
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora
Echinospora Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora
Echinospora Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 14 VAMVPTPGIGHLIPLVELA 32
V V +PGIGHL PL++LA
Sbjct: 23 VLFVSSPGIGHLFPLIQLA 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,932,114
Number of Sequences: 62578
Number of extensions: 567150
Number of successful extensions: 1232
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1185
Number of HSP's gapped (non-prelim): 19
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)