Query 011381
Match_columns 487
No_of_seqs 133 out of 1376
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 00:43:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02992 coniferyl-alcohol glu 100.0 3.6E-67 7.9E-72 528.0 42.2 454 11-481 5-469 (481)
2 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.1E-65 2.3E-70 517.1 42.6 441 1-481 1-450 (451)
3 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.4E-65 5.2E-70 518.0 42.4 452 9-487 7-477 (477)
4 PLN03015 UDP-glucosyl transfer 100.0 4.9E-65 1.1E-69 509.6 41.3 454 12-480 4-467 (470)
5 PLN00164 glucosyltransferase; 100.0 3.7E-64 8E-69 511.1 43.4 460 11-484 3-476 (480)
6 PLN02173 UDP-glucosyl transfer 100.0 3.8E-64 8.2E-69 503.5 42.1 423 10-480 4-447 (449)
7 PLN02670 transferase, transfer 100.0 2.8E-64 6.1E-69 506.7 40.2 444 11-483 6-467 (472)
8 PLN02210 UDP-glucosyl transfer 100.0 6.6E-64 1.4E-68 506.1 40.7 431 9-480 6-454 (456)
9 PLN02555 limonoid glucosyltran 100.0 1.8E-63 3.8E-68 502.7 43.4 451 8-485 4-473 (480)
10 PLN03004 UDP-glycosyltransfera 100.0 1.2E-63 2.5E-68 500.2 38.6 441 11-470 3-450 (451)
11 PLN02208 glycosyltransferase f 100.0 2.3E-63 5E-68 498.9 40.7 425 10-482 3-440 (442)
12 PLN02207 UDP-glycosyltransfera 100.0 3.7E-63 8E-68 498.1 41.5 447 11-482 3-466 (468)
13 PLN00414 glycosyltransferase f 100.0 4.8E-63 1E-67 497.1 40.3 432 10-487 3-446 (446)
14 PLN02554 UDP-glycosyltransfera 100.0 8E-63 1.7E-67 503.2 42.4 455 11-483 2-480 (481)
15 PLN02534 UDP-glycosyltransfera 100.0 6.3E-63 1.4E-67 499.2 41.1 446 9-481 6-486 (491)
16 PLN02562 UDP-glycosyltransfera 100.0 1.1E-62 2.4E-67 496.7 42.7 431 10-480 5-448 (448)
17 PLN03007 UDP-glucosyltransfera 100.0 1.4E-62 3E-67 502.2 42.2 450 9-482 3-481 (482)
18 PLN02764 glycosyltransferase f 100.0 2.4E-62 5.2E-67 488.8 41.3 431 10-486 4-450 (453)
19 PLN02152 indole-3-acetate beta 100.0 3.7E-62 7.9E-67 489.9 41.3 433 12-480 4-455 (455)
20 PLN02448 UDP-glycosyltransfera 100.0 1E-61 2.2E-66 493.4 41.5 437 7-482 6-458 (459)
21 PLN02167 UDP-glycosyltransfera 100.0 3.6E-61 7.8E-66 490.4 40.7 448 10-482 2-473 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.3E-46 2.7E-51 385.2 37.0 400 12-475 21-461 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.2E-47 2.6E-52 399.1 12.0 383 13-460 2-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 7E-42 1.5E-46 344.9 31.4 373 18-478 2-389 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 6.5E-42 1.4E-46 346.5 25.6 368 12-460 1-387 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 1.6E-39 3.5E-44 338.1 25.3 392 11-460 5-438 (496)
27 COG1819 Glycosyl transferases, 100.0 5E-39 1.1E-43 320.7 23.7 388 11-479 1-398 (406)
28 PRK12446 undecaprenyldiphospho 99.9 6.3E-24 1.4E-28 209.5 25.3 321 13-453 3-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.2E-22 2.7E-27 199.0 24.5 309 12-438 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 6.2E-21 1.3E-25 186.8 23.7 123 279-441 188-314 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 3.6E-20 7.9E-25 180.6 26.3 314 12-441 1-324 (357)
32 PRK00726 murG undecaprenyldiph 99.8 9.5E-18 2.1E-22 167.2 29.6 342 12-480 2-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 4.9E-16 1.1E-20 154.4 27.3 319 13-453 1-333 (350)
34 TIGR01133 murG undecaprenyldip 99.7 1.8E-14 3.8E-19 143.1 27.7 85 360-453 243-330 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 1.4E-14 3E-19 145.1 22.5 107 361-477 261-384 (385)
36 PRK13609 diacylglycerol glucos 99.6 3.1E-14 6.8E-19 143.1 22.7 164 278-479 201-369 (380)
37 PRK00025 lpxB lipid-A-disaccha 99.6 3.4E-13 7.4E-18 135.6 21.3 109 362-481 256-377 (380)
38 TIGR03590 PseG pseudaminic aci 99.5 1.8E-13 3.9E-18 130.8 16.1 105 279-407 170-278 (279)
39 PF04101 Glyco_tran_28_C: Glyc 99.5 7.3E-16 1.6E-20 136.1 -2.0 134 281-441 1-144 (167)
40 COG4671 Predicted glycosyl tra 99.5 3.2E-12 6.8E-17 119.4 19.9 340 9-441 7-365 (400)
41 PRK13608 diacylglycerol glucos 99.5 3.1E-11 6.8E-16 121.5 27.2 166 278-481 201-371 (391)
42 PLN02605 monogalactosyldiacylg 99.3 8.1E-10 1.7E-14 111.1 24.2 113 351-479 265-379 (382)
43 TIGR03492 conserved hypothetic 99.3 5E-10 1.1E-14 112.4 22.5 109 353-477 281-394 (396)
44 PF03033 Glyco_transf_28: Glyc 99.2 1.5E-11 3.2E-16 105.0 7.0 122 14-150 1-132 (139)
45 cd03814 GT1_like_2 This family 99.2 2.6E-08 5.5E-13 98.8 28.6 111 350-479 246-363 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.2 5.5E-08 1.2E-12 100.5 31.0 128 281-441 264-400 (465)
47 cd03818 GT1_ExpC_like This fam 99.1 6.3E-07 1.4E-11 90.7 33.8 82 350-441 280-366 (396)
48 COG3980 spsG Spore coat polysa 99.0 1.7E-08 3.8E-13 91.9 17.9 148 279-458 158-307 (318)
49 cd03823 GT1_ExpE7_like This fa 99.0 1.3E-07 2.9E-12 93.3 26.3 80 350-441 242-329 (359)
50 cd03800 GT1_Sucrose_synthase T 99.0 1.8E-07 4E-12 94.3 27.2 79 351-441 283-368 (398)
51 TIGR00236 wecB UDP-N-acetylglu 99.0 1.5E-08 3.2E-13 101.4 18.8 106 351-477 255-363 (365)
52 PRK05749 3-deoxy-D-manno-octul 99.0 1.3E-07 2.8E-12 96.6 26.1 103 362-479 314-421 (425)
53 cd03816 GT1_ALG1_like This fam 99.0 3.2E-07 7E-12 93.3 28.0 91 351-455 294-399 (415)
54 cd03794 GT1_wbuB_like This fam 99.0 2.9E-07 6.3E-12 91.7 27.0 80 350-441 274-365 (394)
55 cd03801 GT1_YqgM_like This fam 99.0 1.6E-06 3.4E-11 85.4 31.3 111 350-479 255-373 (374)
56 PRK10307 putative glycosyl tra 99.0 1.8E-06 3.9E-11 87.8 31.3 165 280-482 229-408 (412)
57 cd04962 GT1_like_5 This family 98.9 1.1E-06 2.4E-11 87.7 28.2 111 351-480 253-369 (371)
58 cd03808 GT1_cap1E_like This fa 98.9 5.2E-06 1.1E-10 81.6 29.3 79 351-441 246-329 (359)
59 cd03825 GT1_wcfI_like This fam 98.8 1.7E-06 3.7E-11 86.0 25.1 111 352-481 245-364 (365)
60 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 6.4E-08 1.4E-12 96.6 14.7 130 279-441 198-337 (363)
61 cd03798 GT1_wlbH_like This fam 98.8 1.2E-05 2.7E-10 79.3 30.4 113 350-480 258-375 (377)
62 cd03817 GT1_UGDG_like This fam 98.8 1.1E-05 2.4E-10 79.9 29.8 78 351-441 259-343 (374)
63 cd03805 GT1_ALG2_like This fam 98.8 5.8E-06 1.3E-10 83.3 28.0 78 351-441 280-364 (392)
64 TIGR03449 mycothiol_MshA UDP-N 98.8 8.2E-06 1.8E-10 82.7 28.7 111 351-480 283-400 (405)
65 PF04007 DUF354: Protein of un 98.8 1.1E-05 2.3E-10 78.5 26.7 112 12-148 1-112 (335)
66 TIGR02472 sucr_P_syn_N sucrose 98.7 4.7E-05 1E-09 78.1 29.5 111 351-479 317-438 (439)
67 cd03820 GT1_amsD_like This fam 98.6 2.8E-05 6.1E-10 76.0 26.8 91 351-456 235-331 (348)
68 cd05844 GT1_like_7 Glycosyltra 98.6 4.8E-05 1E-09 75.8 28.4 79 351-441 245-336 (367)
69 PRK09922 UDP-D-galactose:(gluc 98.6 2.7E-05 5.8E-10 77.7 26.1 131 281-443 181-326 (359)
70 cd03795 GT1_like_4 This family 98.6 3.4E-05 7.4E-10 76.3 26.6 130 280-441 191-332 (357)
71 TIGR02468 sucrsPsyn_pln sucros 98.6 0.00022 4.9E-09 78.2 34.0 88 351-451 548-644 (1050)
72 cd03799 GT1_amsK_like This is 98.6 0.00011 2.5E-09 72.5 29.6 81 351-441 236-327 (355)
73 COG1519 KdtA 3-deoxy-D-manno-o 98.6 0.00013 2.9E-09 71.2 28.1 60 373-441 327-386 (419)
74 cd03822 GT1_ecORF704_like This 98.6 5.2E-05 1.1E-09 75.1 26.1 108 351-478 247-364 (366)
75 cd03821 GT1_Bme6_like This fam 98.5 6.8E-05 1.5E-09 74.1 26.5 107 351-475 262-373 (375)
76 PRK14089 ipid-A-disaccharide s 98.5 7E-06 1.5E-10 80.4 18.6 97 362-475 230-344 (347)
77 cd03811 GT1_WabH_like This fam 98.5 2.5E-05 5.3E-10 76.4 23.0 79 351-441 246-332 (353)
78 cd03796 GT1_PIG-A_like This fa 98.5 0.00013 2.9E-09 73.8 27.8 111 351-481 250-367 (398)
79 cd03802 GT1_AviGT4_like This f 98.5 7E-05 1.5E-09 73.5 24.8 153 282-478 173-333 (335)
80 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 3.9E-06 8.5E-11 83.6 15.1 129 279-440 201-338 (365)
81 TIGR02149 glgA_Coryne glycogen 98.4 0.00055 1.2E-08 68.8 30.2 116 352-481 261-386 (388)
82 cd04955 GT1_like_6 This family 98.4 0.00035 7.6E-09 69.3 27.8 157 283-479 196-362 (363)
83 cd03819 GT1_WavL_like This fam 98.4 0.00067 1.4E-08 67.1 29.2 95 351-455 246-346 (355)
84 cd04951 GT1_WbdM_like This fam 98.4 0.00018 3.8E-09 71.3 24.4 109 351-479 245-358 (360)
85 TIGR03087 stp1 sugar transfera 98.3 0.00019 4.1E-09 72.6 24.3 111 350-480 279-395 (397)
86 TIGR02470 sucr_synth sucrose s 98.3 0.0026 5.7E-08 68.4 33.3 51 379-439 657-707 (784)
87 cd03807 GT1_WbnK_like This fam 98.3 0.00053 1.1E-08 67.4 26.9 107 352-478 252-363 (365)
88 TIGR03088 stp2 sugar transfera 98.3 0.002 4.4E-08 64.4 29.6 111 352-480 256-371 (374)
89 cd03812 GT1_CapH_like This fam 98.2 0.0003 6.5E-09 69.7 22.2 85 351-451 249-338 (358)
90 PLN00142 sucrose synthase 98.2 0.0021 4.6E-08 69.2 27.9 55 377-441 677-736 (815)
91 PLN02275 transferase, transfer 98.2 0.0034 7.4E-08 62.9 28.2 75 351-439 286-371 (371)
92 KOG3349 Predicted glycosyltran 98.1 4.9E-06 1.1E-10 68.6 6.0 120 280-418 4-132 (170)
93 PF02350 Epimerase_2: UDP-N-ac 98.1 5.8E-06 1.3E-10 81.5 7.5 156 277-473 178-343 (346)
94 PRK00654 glgA glycogen synthas 98.0 0.00072 1.6E-08 69.9 21.0 104 363-480 352-461 (466)
95 COG0381 WecB UDP-N-acetylgluco 98.0 0.00093 2E-08 64.9 19.3 108 352-480 263-373 (383)
96 PRK15179 Vi polysaccharide bio 98.0 0.014 3.1E-07 62.6 29.9 112 351-479 574-691 (694)
97 cd03809 GT1_mtfB_like This fam 98.0 0.0022 4.7E-08 63.4 22.6 107 350-475 252-363 (365)
98 PLN02846 digalactosyldiacylgly 97.9 0.01 2.2E-07 60.5 26.9 73 354-441 287-363 (462)
99 PRK01021 lpxB lipid-A-disaccha 97.9 0.005 1.1E-07 63.9 24.3 100 362-468 483-595 (608)
100 cd03791 GT1_Glycogen_synthase_ 97.8 0.015 3.4E-07 60.2 26.9 115 351-479 351-474 (476)
101 TIGR02095 glgA glycogen/starch 97.8 0.0089 1.9E-07 62.0 24.8 110 351-480 346-471 (473)
102 cd03792 GT1_Trehalose_phosphor 97.8 0.052 1.1E-06 54.3 29.2 110 351-480 252-370 (372)
103 cd03806 GT1_ALG11_like This fa 97.8 0.0049 1.1E-07 62.8 21.5 77 351-441 305-392 (419)
104 PRK10125 putative glycosyl tra 97.7 0.0064 1.4E-07 61.6 21.8 87 376-480 317-403 (405)
105 PLN02949 transferase, transfer 97.7 0.085 1.8E-06 54.3 30.7 79 351-441 335-422 (463)
106 PF02684 LpxB: Lipid-A-disacch 97.7 0.005 1.1E-07 60.9 19.5 104 360-470 253-366 (373)
107 COG0763 LpxB Lipid A disacchar 97.6 0.065 1.4E-06 52.3 25.5 106 364-480 261-380 (381)
108 cd04946 GT1_AmsK_like This fam 97.6 0.00064 1.4E-08 69.0 12.5 111 351-476 289-406 (407)
109 PRK15427 colanic acid biosynth 97.5 0.0026 5.5E-08 64.6 15.3 113 351-481 279-405 (406)
110 PLN02316 synthase/transferase 97.5 0.098 2.1E-06 58.2 27.8 115 352-479 901-1031(1036)
111 cd03804 GT1_wbaZ_like This fam 97.5 0.00064 1.4E-08 67.4 10.2 127 282-442 197-327 (351)
112 PLN02501 digalactosyldiacylgly 97.4 0.033 7.2E-07 58.7 21.3 76 352-442 602-682 (794)
113 PRK15484 lipopolysaccharide 1, 97.3 0.01 2.3E-07 59.6 16.8 113 351-481 257-377 (380)
114 PF00534 Glycos_transf_1: Glyc 97.3 0.00066 1.4E-08 59.7 7.3 79 351-441 73-158 (172)
115 PF13844 Glyco_transf_41: Glyc 97.2 0.002 4.4E-08 65.0 10.4 152 277-459 282-446 (468)
116 COG5017 Uncharacterized conser 97.2 0.0025 5.5E-08 51.9 8.3 111 282-421 2-124 (161)
117 PF06722 DUF1205: Protein of u 97.2 0.00052 1.1E-08 53.8 4.2 63 266-342 27-94 (97)
118 TIGR02918 accessory Sec system 97.0 0.078 1.7E-06 55.2 19.9 98 351-454 376-480 (500)
119 cd04949 GT1_gtfA_like This fam 97.0 0.0045 9.7E-08 61.9 10.5 95 351-454 261-359 (372)
120 cd01635 Glycosyltransferase_GT 96.8 0.076 1.6E-06 48.2 16.5 48 352-401 162-217 (229)
121 PRK09814 beta-1,6-galactofuran 96.6 0.0081 1.8E-07 59.2 8.6 110 351-478 207-332 (333)
122 PF13692 Glyco_trans_1_4: Glyc 96.6 0.0033 7.2E-08 52.7 5.1 79 351-441 53-135 (135)
123 cd03813 GT1_like_3 This family 96.4 0.11 2.3E-06 54.0 16.0 85 351-450 354-448 (475)
124 COG1817 Uncharacterized protei 96.2 1 2.2E-05 42.7 19.2 107 20-149 8-114 (346)
125 cd04950 GT1_like_1 Glycosyltra 96.2 0.095 2.1E-06 52.5 13.5 109 350-481 253-371 (373)
126 PRK10017 colanic acid biosynth 95.8 0.15 3.1E-06 51.8 13.0 99 363-479 323-422 (426)
127 PHA01633 putative glycosyl tra 95.5 0.14 3E-06 50.2 10.9 83 352-441 202-307 (335)
128 KOG4626 O-linked N-acetylgluco 95.4 0.16 3.6E-06 52.1 11.1 123 278-421 757-890 (966)
129 PF13579 Glyco_trans_4_4: Glyc 95.0 0.044 9.5E-07 46.8 5.2 96 27-146 6-103 (160)
130 PRK15490 Vi polysaccharide bio 94.8 0.43 9.4E-06 49.6 12.4 111 351-479 455-573 (578)
131 COG3914 Spy Predicted O-linked 94.1 0.65 1.4E-05 47.7 11.7 106 277-403 427-543 (620)
132 PRK10422 lipopolysaccharide co 94.0 6.8 0.00015 38.8 19.1 41 11-51 5-46 (352)
133 PRK10916 ADP-heptose:LPS hepto 93.9 2.1 4.6E-05 42.3 15.1 104 12-144 1-106 (348)
134 PF08660 Alg14: Oligosaccharid 93.7 1.3 2.8E-05 38.8 11.6 116 19-147 5-129 (170)
135 PRK14098 glycogen synthase; Pr 93.7 1.1 2.3E-05 46.8 12.9 113 351-480 362-484 (489)
136 PF13477 Glyco_trans_4_2: Glyc 93.2 0.91 2E-05 37.9 9.7 100 13-144 1-104 (139)
137 TIGR02201 heptsyl_trn_III lipo 93.1 6.2 0.00013 38.9 17.0 107 13-145 1-109 (344)
138 PF13524 Glyco_trans_1_2: Glyc 92.5 1.3 2.8E-05 34.1 9.0 81 376-476 9-91 (92)
139 PHA01630 putative group 1 glyc 92.3 1 2.2E-05 44.3 9.9 112 358-481 197-330 (331)
140 PF12000 Glyco_trans_4_3: Gkyc 92.2 2.2 4.8E-05 37.3 10.7 90 39-145 2-94 (171)
141 TIGR02195 heptsyl_trn_II lipop 92.0 8.7 0.00019 37.6 16.3 103 13-144 1-105 (334)
142 TIGR02400 trehalose_OtsA alpha 91.7 0.92 2E-05 46.7 9.2 104 356-480 341-455 (456)
143 cd03789 GT1_LPS_heptosyltransf 90.7 15 0.00033 34.8 19.2 39 13-51 1-40 (279)
144 PLN02939 transferase, transfer 90.5 3.6 7.8E-05 45.6 12.5 83 351-440 837-930 (977)
145 TIGR02193 heptsyl_trn_I lipopo 89.6 1.2 2.6E-05 43.4 7.6 134 279-439 179-319 (319)
146 COG0859 RfaF ADP-heptose:LPS h 89.0 21 0.00046 35.0 15.9 106 11-144 1-107 (334)
147 COG4370 Uncharacterized protei 86.5 0.99 2.2E-05 42.5 4.3 106 356-476 300-408 (412)
148 PF13439 Glyco_transf_4: Glyco 85.3 11 0.00023 32.3 10.4 31 20-51 10-40 (177)
149 cd03788 GT1_TPS Trehalose-6-Ph 83.3 2.7 5.9E-05 43.3 6.5 102 355-479 345-459 (460)
150 PF06258 Mito_fiss_Elm1: Mitoc 82.3 9.4 0.0002 37.1 9.3 59 359-420 220-282 (311)
151 TIGR02919 accessory Sec system 82.1 23 0.0005 36.2 12.4 79 351-441 328-411 (438)
152 PRK14099 glycogen synthase; Pr 81.6 12 0.00027 38.8 10.6 41 10-51 2-48 (485)
153 TIGR03713 acc_sec_asp1 accesso 81.4 4.2 9E-05 42.6 7.0 90 352-458 410-506 (519)
154 COG0438 RfaG Glycosyltransfera 78.9 58 0.0013 30.7 14.0 79 351-441 257-342 (381)
155 PF00731 AIRC: AIR carboxylase 77.3 20 0.00042 30.6 8.5 140 280-460 1-148 (150)
156 PRK02261 methylaspartate mutas 75.9 14 0.00031 31.0 7.4 39 10-49 2-40 (137)
157 cd00984 DnaB_C DnaB helicase C 75.8 29 0.00062 32.0 10.3 39 13-51 15-53 (242)
158 PRK06321 replicative DNA helic 74.1 31 0.00068 35.6 10.7 38 14-51 229-266 (472)
159 PRK05595 replicative DNA helic 73.3 24 0.00052 36.2 9.8 39 13-51 203-241 (444)
160 PF06925 MGDG_synth: Monogalac 73.3 3.3 7.2E-05 36.1 3.1 23 24-46 1-23 (169)
161 PF02951 GSH-S_N: Prokaryotic 71.1 7.9 0.00017 31.6 4.5 39 12-51 1-42 (119)
162 PF04413 Glycos_transf_N: 3-De 70.8 32 0.00068 30.6 8.7 102 13-147 22-126 (186)
163 TIGR00715 precor6x_red precorr 70.6 33 0.00072 32.2 9.2 33 12-50 1-33 (256)
164 PLN03063 alpha,alpha-trehalose 70.5 11 0.00024 41.7 7.0 100 363-482 371-478 (797)
165 cd03793 GT1_Glycogen_synthase_ 70.5 14 0.00031 38.8 7.2 78 361-441 468-552 (590)
166 cd07037 TPP_PYR_MenD Pyrimidin 70.4 15 0.00032 31.9 6.4 27 371-397 62-94 (162)
167 PF05159 Capsule_synth: Capsul 70.4 19 0.0004 34.1 7.7 42 353-397 185-226 (269)
168 COG0003 ArsA Predicted ATPase 69.8 41 0.00088 32.8 9.9 39 12-51 2-41 (322)
169 PRK05748 replicative DNA helic 69.4 48 0.001 34.0 11.0 39 13-51 205-243 (448)
170 cd00561 CobA_CobO_BtuR ATP:cor 68.1 79 0.0017 27.3 11.8 100 13-129 4-106 (159)
171 PRK08760 replicative DNA helic 67.8 26 0.00056 36.3 8.6 39 13-51 231-269 (476)
172 cd02067 B12-binding B12 bindin 67.3 22 0.00047 28.8 6.5 36 13-49 1-36 (119)
173 cd07035 TPP_PYR_POX_like Pyrim 67.0 14 0.0003 31.5 5.6 26 372-397 62-93 (155)
174 PLN02470 acetolactate synthase 66.6 8 0.00017 41.3 4.8 28 369-396 76-109 (585)
175 PRK06849 hypothetical protein; 66.5 40 0.00088 33.8 9.6 37 10-51 3-39 (389)
176 PRK05636 replicative DNA helic 65.5 29 0.00063 36.2 8.4 39 13-51 267-305 (505)
177 TIGR00665 DnaB replicative DNA 65.1 57 0.0012 33.3 10.5 39 13-51 197-235 (434)
178 PRK06718 precorrin-2 dehydroge 64.6 90 0.0019 28.1 10.5 116 353-476 56-180 (202)
179 KOG0853 Glycosyltransferase [C 64.5 17 0.00036 37.4 6.2 67 375-453 376-442 (495)
180 PF04464 Glyphos_transf: CDP-G 64.2 9.1 0.0002 38.1 4.4 111 352-476 253-368 (369)
181 cd07039 TPP_PYR_POX Pyrimidine 63.8 49 0.0011 28.6 8.4 26 372-397 66-97 (164)
182 PF01075 Glyco_transf_9: Glyco 63.6 9.5 0.00021 35.4 4.2 99 278-395 104-208 (247)
183 TIGR03600 phage_DnaB phage rep 62.6 64 0.0014 32.8 10.3 39 13-51 196-234 (421)
184 COG1703 ArgK Putative periplas 62.6 1.5E+02 0.0033 28.5 12.4 40 10-50 50-89 (323)
185 COG0496 SurE Predicted acid ph 61.9 43 0.00093 31.2 7.9 26 24-51 12-37 (252)
186 PRK10964 ADP-heptose:LPS hepto 61.1 12 0.00027 36.4 4.6 38 12-49 1-39 (322)
187 PF02441 Flavoprotein: Flavopr 60.6 12 0.00027 30.8 3.9 36 12-49 1-36 (129)
188 COG0052 RpsB Ribosomal protein 60.6 89 0.0019 29.0 9.5 31 118-148 156-188 (252)
189 PRK08006 replicative DNA helic 60.5 95 0.0021 32.1 11.1 38 14-51 227-264 (471)
190 COG0541 Ffh Signal recognition 59.9 93 0.002 31.5 10.2 42 9-51 98-139 (451)
191 TIGR02398 gluc_glyc_Psyn gluco 57.8 92 0.002 32.4 10.3 110 353-482 364-483 (487)
192 PRK08506 replicative DNA helic 57.4 99 0.0021 32.0 10.6 38 13-51 194-231 (472)
193 PF12146 Hydrolase_4: Putative 55.9 32 0.0007 25.6 5.1 35 11-46 15-49 (79)
194 smart00851 MGS MGS-like domain 54.9 92 0.002 23.6 9.0 33 111-143 48-89 (90)
195 PRK05986 cob(I)alamin adenolsy 53.9 1.6E+02 0.0035 26.2 11.9 105 11-129 22-126 (191)
196 PRK13789 phosphoribosylamine-- 53.8 51 0.0011 33.6 7.8 36 10-51 3-38 (426)
197 COG0552 FtsY Signal recognitio 53.8 98 0.0021 30.2 9.0 42 9-51 137-178 (340)
198 PRK09165 replicative DNA helic 53.4 1.1E+02 0.0025 31.9 10.3 39 13-51 219-271 (497)
199 PRK07773 replicative DNA helic 53.3 1.2E+02 0.0025 34.4 11.1 39 13-51 219-257 (886)
200 PRK14501 putative bifunctional 52.8 18 0.00038 39.8 4.5 112 354-482 345-463 (726)
201 PLN02929 NADH kinase 52.5 20 0.00044 34.4 4.3 66 366-441 63-137 (301)
202 PF01975 SurE: Survival protei 52.5 28 0.00062 31.2 5.0 38 12-51 1-38 (196)
203 PRK05973 replicative DNA helic 52.2 94 0.002 28.8 8.5 38 13-51 66-103 (237)
204 PLN02935 Bifunctional NADH kin 52.2 24 0.00053 36.3 5.0 53 366-441 261-318 (508)
205 PRK12311 rpsB 30S ribosomal pr 52.0 81 0.0018 30.8 8.3 32 117-148 151-184 (326)
206 KOG0780 Signal recognition par 51.9 80 0.0017 31.5 8.1 46 5-51 95-140 (483)
207 PHA02542 41 41 helicase; Provi 51.6 61 0.0013 33.5 7.9 38 13-51 192-229 (473)
208 PRK06904 replicative DNA helic 51.6 1.4E+02 0.003 31.0 10.5 39 13-51 223-261 (472)
209 PRK00090 bioD dithiobiotin syn 51.0 1.4E+02 0.0031 26.9 9.8 34 14-48 2-36 (222)
210 PF07302 AroM: AroM protein; 50.6 1.5E+02 0.0032 27.1 9.3 29 116-144 176-207 (221)
211 PF02310 B12-binding: B12 bind 50.6 32 0.0007 27.6 4.8 36 13-49 2-37 (121)
212 TIGR01470 cysG_Nterm siroheme 50.5 1.9E+02 0.0042 26.0 11.2 96 362-462 64-166 (205)
213 PRK08840 replicative DNA helic 50.4 1.5E+02 0.0032 30.7 10.5 38 14-51 220-257 (464)
214 cd01425 RPS2 Ribosomal protein 50.2 1.6E+02 0.0034 26.3 9.5 32 117-148 126-159 (193)
215 PRK06749 replicative DNA helic 49.9 1.2E+02 0.0026 31.0 9.7 38 13-51 188-225 (428)
216 PRK07004 replicative DNA helic 49.8 1.4E+02 0.003 30.8 10.2 39 13-51 215-253 (460)
217 PRK08322 acetolactate synthase 49.5 29 0.00063 36.7 5.5 27 370-396 64-96 (547)
218 COG0299 PurN Folate-dependent 49.0 1.8E+02 0.0038 26.0 9.1 119 296-456 67-186 (200)
219 cd00550 ArsA_ATPase Oxyanion-t 48.6 1.2E+02 0.0026 28.4 8.9 37 14-51 3-39 (254)
220 PF02142 MGS: MGS-like domain 48.1 50 0.0011 25.5 5.3 32 112-143 54-94 (95)
221 TIGR00173 menD 2-succinyl-5-en 46.8 52 0.0011 33.6 6.6 25 372-396 66-96 (432)
222 COG2099 CobK Precorrin-6x redu 46.8 1.4E+02 0.003 27.9 8.5 54 382-436 163-220 (257)
223 PRK08155 acetolactate synthase 46.7 47 0.001 35.3 6.5 25 372-396 79-109 (564)
224 PRK10964 ADP-heptose:LPS hepto 46.4 2.5E+02 0.0054 27.1 11.2 131 280-440 179-321 (322)
225 PLN02939 transferase, transfer 46.2 41 0.00088 37.7 5.9 44 7-51 477-526 (977)
226 PRK07710 acetolactate synthase 45.8 38 0.00083 36.0 5.6 26 371-396 80-111 (571)
227 PRK10867 signal recognition pa 45.7 2E+02 0.0042 29.5 10.3 42 10-51 99-140 (433)
228 PF00448 SRP54: SRP54-type pro 45.3 1.8E+02 0.004 25.9 9.1 39 12-51 2-40 (196)
229 TIGR02193 heptsyl_trn_I lipopo 45.2 92 0.002 30.1 7.9 39 13-51 1-40 (319)
230 PRK06276 acetolactate synthase 45.1 42 0.0009 35.9 5.8 26 371-396 65-96 (586)
231 PRK14098 glycogen synthase; Pr 44.8 36 0.00077 35.5 5.1 43 8-51 2-50 (489)
232 TIGR02015 BchY chlorophyllide 44.5 2.3E+02 0.005 28.8 10.8 29 115-146 352-380 (422)
233 cd01122 GP4d_helicase GP4d_hel 43.9 2.3E+02 0.005 26.5 10.3 39 13-51 32-70 (271)
234 TIGR02370 pyl_corrinoid methyl 43.7 1.1E+02 0.0024 27.4 7.5 39 10-49 83-121 (197)
235 PF00551 Formyl_trans_N: Formy 43.7 1.1E+02 0.0024 26.9 7.4 34 12-49 1-36 (181)
236 PRK03378 ppnK inorganic polyph 43.5 31 0.00068 33.1 4.1 56 364-441 60-119 (292)
237 PRK04885 ppnK inorganic polyph 43.4 27 0.00059 33.0 3.6 53 367-441 35-93 (265)
238 TIGR01196 edd 6-phosphoglucona 42.9 2.2E+02 0.0047 30.3 10.2 105 11-149 64-179 (601)
239 COG1484 DnaC DNA replication p 42.7 36 0.00078 31.9 4.3 40 11-51 105-144 (254)
240 cd02070 corrinoid_protein_B12- 42.2 1.3E+02 0.0029 26.9 7.8 38 11-49 82-119 (201)
241 TIGR02699 archaeo_AfpA archaeo 42.0 33 0.00071 30.1 3.7 36 14-50 2-38 (174)
242 TIGR00959 ffh signal recogniti 41.6 2.3E+02 0.0051 28.9 10.2 42 10-51 98-139 (428)
243 cd01981 Pchlide_reductase_B Pc 41.4 2.5E+02 0.0055 28.5 10.7 28 116-146 368-395 (430)
244 PRK11889 flhF flagellar biosyn 41.2 2.9E+02 0.0063 28.0 10.3 41 10-51 240-280 (436)
245 COG2120 Uncharacterized protei 41.0 48 0.001 30.7 4.9 39 8-48 7-46 (237)
246 PRK08305 spoVFB dipicolinate s 40.9 40 0.00087 30.2 4.1 39 11-50 5-43 (196)
247 PRK02231 ppnK inorganic polyph 40.8 36 0.00078 32.3 4.0 57 362-440 37-97 (272)
248 cd01974 Nitrogenase_MoFe_beta 40.5 2.7E+02 0.0059 28.4 10.7 27 116-145 375-401 (435)
249 PF10727 Rossmann-like: Rossma 40.3 47 0.001 27.4 4.2 42 1-49 1-42 (127)
250 PRK01231 ppnK inorganic polyph 40.3 1.1E+02 0.0024 29.4 7.3 53 367-441 62-118 (295)
251 PRK03359 putative electron tra 40.1 51 0.0011 30.9 4.9 39 106-148 104-148 (256)
252 PRK12342 hypothetical protein; 39.8 43 0.00094 31.4 4.3 39 106-148 101-145 (254)
253 cd02071 MM_CoA_mut_B12_BD meth 39.7 1.2E+02 0.0026 24.6 6.6 36 13-49 1-36 (122)
254 cd07038 TPP_PYR_PDC_IPDC_like 39.5 33 0.00072 29.6 3.3 26 372-397 62-93 (162)
255 TIGR00347 bioD dethiobiotin sy 39.5 2.4E+02 0.0052 24.0 9.3 27 19-46 6-32 (166)
256 TIGR00708 cobA cob(I)alamin ad 39.0 2.7E+02 0.0058 24.4 11.8 34 12-46 6-39 (173)
257 PRK02155 ppnK NAD(+)/NADH kina 38.8 48 0.001 31.8 4.6 54 366-441 62-119 (291)
258 COG0801 FolK 7,8-dihydro-6-hyd 38.5 65 0.0014 27.8 4.8 34 281-314 3-36 (160)
259 TIGR00379 cobB cobyrinic acid 37.9 2.8E+02 0.0062 28.5 10.4 106 14-149 2-120 (449)
260 PRK04539 ppnK inorganic polyph 37.4 64 0.0014 31.1 5.2 54 366-441 67-124 (296)
261 PF07355 GRDB: Glycine/sarcosi 37.1 65 0.0014 31.5 5.1 39 108-146 70-118 (349)
262 COG1663 LpxK Tetraacyldisaccha 37.0 83 0.0018 30.7 5.8 34 17-51 55-88 (336)
263 PRK06249 2-dehydropantoate 2-r 36.9 44 0.00095 32.4 4.1 34 10-49 4-37 (313)
264 PRK14099 glycogen synthase; Pr 36.8 52 0.0011 34.2 4.8 98 366-479 368-476 (485)
265 PRK03372 ppnK inorganic polyph 36.7 58 0.0013 31.5 4.8 55 365-441 70-128 (306)
266 PRK13010 purU formyltetrahydro 36.6 3.9E+02 0.0085 25.6 10.8 115 298-455 159-275 (289)
267 PRK01077 cobyrinic acid a,c-di 36.5 2.4E+02 0.0053 28.9 9.6 36 13-49 5-41 (451)
268 PF02585 PIG-L: GlcNAc-PI de-N 35.9 2.3E+02 0.005 22.9 7.8 16 32-48 18-33 (128)
269 PF06564 YhjQ: YhjQ protein; 35.8 3.7E+02 0.008 25.1 12.7 34 13-47 3-37 (243)
270 PRK12446 undecaprenyldiphospho 35.6 1.1E+02 0.0024 30.2 6.8 26 368-395 92-120 (352)
271 COG3195 Uncharacterized protei 35.6 1.6E+02 0.0034 25.5 6.4 55 401-459 110-164 (176)
272 PRK05858 hypothetical protein; 35.5 72 0.0016 33.7 5.7 25 372-396 70-100 (542)
273 PRK01911 ppnK inorganic polyph 35.2 53 0.0011 31.6 4.2 56 364-441 61-120 (292)
274 cd02069 methionine_synthase_B1 35.1 1.9E+02 0.004 26.3 7.6 39 10-49 87-125 (213)
275 COG2099 CobK Precorrin-6x redu 34.9 50 0.0011 30.7 3.8 33 113-145 61-99 (257)
276 PRK08199 thiamine pyrophosphat 34.7 93 0.002 33.0 6.5 26 371-396 73-104 (557)
277 PRK12448 dihydroxy-acid dehydr 34.5 2.2E+02 0.0049 30.3 8.8 48 102-149 95-146 (615)
278 TIGR00110 ilvD dihydroxy-acid 34.4 3.2E+02 0.007 28.7 9.9 48 102-149 73-124 (535)
279 COG4088 Predicted nucleotide k 34.1 3.7E+02 0.008 24.6 10.6 35 13-48 3-37 (261)
280 PF02374 ArsA_ATPase: Anion-tr 33.8 51 0.0011 31.9 4.0 37 14-51 4-40 (305)
281 PRK06067 flagellar accessory p 33.8 1.2E+02 0.0027 27.7 6.4 40 11-51 25-64 (234)
282 PRK09054 phosphogluconate dehy 33.8 3.3E+02 0.0072 29.0 9.9 49 101-149 127-180 (603)
283 PRK07525 sulfoacetaldehyde ace 33.6 1.4E+02 0.0031 31.9 7.7 27 370-396 69-101 (588)
284 PRK06048 acetolactate synthase 33.3 91 0.002 33.1 6.1 25 372-396 73-103 (561)
285 PRK03708 ppnK inorganic polyph 33.2 47 0.001 31.6 3.5 53 367-441 57-112 (277)
286 PF06180 CbiK: Cobalt chelatas 33.2 72 0.0016 30.1 4.7 39 280-318 2-43 (262)
287 PRK13011 formyltetrahydrofolat 33.0 3.4E+02 0.0073 26.0 9.3 114 299-455 156-271 (286)
288 cd01715 ETF_alpha The electron 32.9 3.2E+02 0.0069 23.5 9.9 38 110-147 75-115 (168)
289 PRK05920 aromatic acid decarbo 32.9 65 0.0014 29.1 4.1 37 11-49 3-39 (204)
290 COG3340 PepE Peptidase E [Amin 32.9 2.7E+02 0.0059 25.3 7.9 46 267-313 22-67 (224)
291 COG1748 LYS9 Saccharopine dehy 32.8 3.1E+02 0.0068 27.5 9.2 53 12-78 2-55 (389)
292 PF02571 CbiJ: Precorrin-6x re 32.6 1.3E+02 0.0028 28.2 6.2 30 116-145 192-225 (249)
293 COG2185 Sbm Methylmalonyl-CoA 32.4 74 0.0016 26.8 4.1 37 10-47 11-47 (143)
294 PRK02797 4-alpha-L-fucosyltran 32.3 65 0.0014 31.1 4.2 79 352-438 207-291 (322)
295 TIGR02852 spore_dpaB dipicolin 32.2 60 0.0013 28.8 3.8 36 13-49 2-37 (187)
296 PRK04940 hypothetical protein; 32.2 1.1E+02 0.0024 26.9 5.4 31 118-148 60-91 (180)
297 PF01210 NAD_Gly3P_dh_N: NAD-d 32.0 35 0.00075 29.3 2.2 32 13-50 1-32 (157)
298 TIGR00118 acolac_lg acetolacta 31.9 89 0.0019 33.1 5.8 25 372-396 67-97 (558)
299 PRK02649 ppnK inorganic polyph 31.9 67 0.0014 31.1 4.3 54 366-441 67-124 (305)
300 PRK02910 light-independent pro 31.8 4.3E+02 0.0093 27.8 10.7 28 116-146 360-387 (519)
301 COG3660 Predicted nucleoside-d 31.8 2.7E+02 0.0058 26.3 7.8 77 299-394 188-270 (329)
302 TIGR03880 KaiC_arch_3 KaiC dom 31.6 1.5E+02 0.0033 26.8 6.6 38 13-51 18-55 (224)
303 PF08323 Glyco_transf_5: Starc 31.5 41 0.00088 31.3 2.8 25 26-51 20-44 (245)
304 PLN03064 alpha,alpha-trehalose 31.1 2.7E+02 0.0059 31.6 9.3 104 358-482 447-562 (934)
305 PRK06725 acetolactate synthase 31.0 49 0.0011 35.2 3.6 27 370-396 78-110 (570)
306 COG2210 Peroxiredoxin family p 30.5 1E+02 0.0022 25.8 4.5 36 11-48 4-39 (137)
307 PRK14077 pnk inorganic polypho 30.3 72 0.0016 30.5 4.3 55 365-441 62-120 (287)
308 TIGR00715 precor6x_red precorr 30.2 3.3E+02 0.0071 25.6 8.6 55 381-436 163-221 (256)
309 PF04127 DFP: DNA / pantothena 30.2 54 0.0012 29.1 3.2 20 29-49 33-52 (185)
310 COG0240 GpsA Glycerol-3-phosph 30.1 5.3E+02 0.012 25.2 12.0 34 12-51 2-35 (329)
311 TIGR00725 conserved hypothetic 29.8 1.1E+02 0.0023 26.4 4.9 37 361-397 84-123 (159)
312 PRK08978 acetolactate synthase 29.8 92 0.002 32.9 5.4 25 372-396 66-96 (548)
313 COG2085 Predicted dinucleotide 29.8 84 0.0018 28.4 4.3 33 12-50 2-34 (211)
314 PRK05632 phosphate acetyltrans 29.4 6.6E+02 0.014 27.5 11.9 36 13-49 4-40 (684)
315 COG0297 GlgA Glycogen synthase 29.1 2.6E+02 0.0056 29.1 8.2 86 377-476 381-472 (487)
316 cd07025 Peptidase_S66 LD-Carbo 29.1 68 0.0015 30.6 3.9 75 291-398 45-121 (282)
317 PF02776 TPP_enzyme_N: Thiamin 29.0 71 0.0015 27.7 3.8 26 372-397 67-98 (172)
318 PF13499 EF-hand_7: EF-hand do 28.8 54 0.0012 22.9 2.5 55 419-477 10-64 (66)
319 PRK06029 3-octaprenyl-4-hydrox 28.8 81 0.0018 28.0 4.0 37 12-49 2-38 (185)
320 PRK07979 acetolactate synthase 28.3 74 0.0016 33.9 4.4 27 370-396 68-100 (574)
321 PRK11519 tyrosine kinase; Prov 28.2 5.2E+02 0.011 28.4 11.0 38 12-50 526-565 (719)
322 TIGR01162 purE phosphoribosyla 27.9 3.9E+02 0.0085 23.0 9.7 135 284-461 3-147 (156)
323 PRK07524 hypothetical protein; 27.7 1.2E+02 0.0027 31.8 6.0 25 372-396 67-97 (535)
324 cd01968 Nitrogenase_NifE_I Nit 27.7 6.4E+02 0.014 25.4 10.9 26 116-144 354-379 (410)
325 TIGR01917 gly_red_sel_B glycin 27.6 1.1E+02 0.0024 30.8 5.0 43 104-146 62-114 (431)
326 cd01977 Nitrogenase_VFe_alpha 27.3 6E+02 0.013 25.7 10.6 25 118-145 358-382 (415)
327 TIGR01918 various_sel_PB selen 27.3 1.1E+02 0.0025 30.7 5.0 46 372-419 347-394 (431)
328 PRK06522 2-dehydropantoate 2-r 27.2 72 0.0016 30.5 3.8 32 12-49 1-32 (304)
329 TIGR00655 PurU formyltetrahydr 27.0 5.4E+02 0.012 24.5 9.5 115 298-455 150-266 (280)
330 PF07429 Glyco_transf_56: 4-al 26.9 88 0.0019 30.7 4.1 82 351-440 245-332 (360)
331 PRK05299 rpsB 30S ribosomal pr 26.8 3.3E+02 0.0071 25.6 7.9 32 117-148 156-189 (258)
332 PRK08057 cobalt-precorrin-6x r 26.7 95 0.0021 29.0 4.3 32 115-146 62-99 (248)
333 PRK14075 pnk inorganic polypho 26.5 94 0.002 29.2 4.3 53 367-441 41-94 (256)
334 PRK06732 phosphopantothenate-- 26.5 72 0.0016 29.4 3.4 20 29-49 30-49 (229)
335 TIGR01283 nifE nitrogenase mol 26.4 7.2E+02 0.016 25.5 11.7 27 116-145 393-419 (456)
336 COG1618 Predicted nucleotide k 26.4 1.7E+02 0.0036 25.5 5.2 39 10-49 4-43 (179)
337 TIGR01284 alt_nitrog_alph nitr 26.4 5.4E+02 0.012 26.5 10.1 26 117-145 394-419 (457)
338 cd01124 KaiC KaiC is a circadi 26.3 2.1E+02 0.0045 24.8 6.4 37 14-51 2-38 (187)
339 PRK05784 phosphoribosylamine-- 26.2 2.3E+02 0.005 29.5 7.4 32 12-48 1-33 (486)
340 PRK08617 acetolactate synthase 26.0 1.4E+02 0.0031 31.6 6.0 26 372-397 70-101 (552)
341 PRK06466 acetolactate synthase 25.9 1.4E+02 0.003 31.8 6.0 26 371-396 69-100 (574)
342 PRK04761 ppnK inorganic polyph 25.7 49 0.0011 30.9 2.1 28 368-397 26-57 (246)
343 KOG3339 Predicted glycosyltran 25.6 4.8E+02 0.01 23.2 8.0 27 11-38 38-64 (211)
344 PRK06027 purU formyltetrahydro 25.6 5.5E+02 0.012 24.5 9.4 115 298-455 155-271 (286)
345 PRK02645 ppnK inorganic polyph 25.3 1.5E+02 0.0033 28.6 5.6 29 367-397 57-89 (305)
346 cd00532 MGS-like MGS-like doma 25.0 3.5E+02 0.0076 21.4 8.5 24 24-49 10-33 (112)
347 PLN02948 phosphoribosylaminoim 24.9 7.8E+02 0.017 26.3 11.2 85 372-462 468-560 (577)
348 PF03308 ArgK: ArgK protein; 24.4 5.7E+02 0.012 24.2 8.8 39 10-49 28-66 (266)
349 PRK13982 bifunctional SbtC-lik 24.3 98 0.0021 32.0 4.2 39 10-49 255-305 (475)
350 PRK13195 pyrrolidone-carboxyla 24.3 2.4E+02 0.0053 25.8 6.3 25 12-36 2-28 (222)
351 KOG0023 Alcohol dehydrogenase, 24.3 1.9E+02 0.0041 28.1 5.7 35 10-50 181-215 (360)
352 PRK07313 phosphopantothenoylcy 24.3 1E+02 0.0022 27.3 3.8 37 12-50 2-38 (182)
353 PF05225 HTH_psq: helix-turn-h 24.0 88 0.0019 20.4 2.5 26 427-454 1-26 (45)
354 PRK03501 ppnK inorganic polyph 23.9 1.3E+02 0.0028 28.4 4.6 54 367-441 39-97 (264)
355 PF00920 ILVD_EDD: Dehydratase 23.8 1.2E+02 0.0026 31.6 4.7 50 102-151 63-116 (521)
356 PF10093 DUF2331: Uncharacteri 23.6 1.5E+02 0.0033 29.4 5.2 35 17-51 6-40 (374)
357 PF05728 UPF0227: Uncharacteri 23.5 1.6E+02 0.0035 26.1 5.0 29 120-148 61-90 (187)
358 PRK06456 acetolactate synthase 23.5 57 0.0012 34.7 2.5 25 372-396 71-101 (572)
359 TIGR01011 rpsB_bact ribosomal 23.5 4.4E+02 0.0095 24.2 7.9 32 117-148 154-187 (225)
360 cd01714 ETF_beta The electron 23.5 1.3E+02 0.0028 27.1 4.5 35 110-144 100-140 (202)
361 TIGR01281 DPOR_bchL light-inde 23.2 1.3E+02 0.0029 28.1 4.7 35 12-47 1-35 (268)
362 COG3563 KpsC Capsule polysacch 23.0 8.6E+02 0.019 25.2 10.8 144 293-479 165-312 (671)
363 PF02571 CbiJ: Precorrin-6x re 22.9 1.1E+02 0.0023 28.7 3.9 31 115-145 63-99 (249)
364 PRK13011 formyltetrahydrofolat 22.9 6.7E+02 0.015 23.9 9.9 39 8-49 86-125 (286)
365 PF02702 KdpD: Osmosensitive K 22.8 1.3E+02 0.0029 27.1 4.2 40 9-49 3-42 (211)
366 cd02032 Bchl_like This family 22.8 1.3E+02 0.0029 28.1 4.6 37 12-49 1-37 (267)
367 PRK13604 luxD acyl transferase 22.6 1.9E+02 0.004 28.1 5.5 36 10-46 35-70 (307)
368 cd03412 CbiK_N Anaerobic cobal 22.6 1.5E+02 0.0032 24.4 4.2 38 280-317 2-41 (127)
369 PRK06270 homoserine dehydrogen 22.5 4.4E+02 0.0094 25.9 8.3 58 360-418 80-149 (341)
370 TIGR02302 aProt_lowcomp conser 22.5 2E+02 0.0043 32.2 6.2 56 426-482 474-535 (851)
371 CHL00072 chlL photochlorophyll 22.4 1.5E+02 0.0033 28.4 4.9 38 12-50 1-38 (290)
372 COG2733 Predicted membrane pro 22.1 1.1E+02 0.0023 30.4 3.7 57 377-438 38-108 (415)
373 TIGR03457 sulphoacet_xsc sulfo 22.0 4.1E+02 0.0088 28.3 8.6 27 370-396 65-97 (579)
374 PRK12921 2-dehydropantoate 2-r 21.9 98 0.0021 29.6 3.6 31 12-48 1-31 (305)
375 COG1066 Sms Predicted ATP-depe 21.9 2.5E+02 0.0055 28.4 6.2 37 13-51 95-131 (456)
376 PRK04020 rps2P 30S ribosomal p 21.8 3.7E+02 0.008 24.3 6.9 31 118-148 114-146 (204)
377 PRK09620 hypothetical protein; 21.8 1.1E+02 0.0024 28.2 3.7 20 29-49 33-52 (229)
378 COG0467 RAD55 RecA-superfamily 21.8 2.2E+02 0.0047 26.6 5.8 40 11-51 23-62 (260)
379 PF01372 Melittin: Melittin; 21.5 17 0.00037 20.2 -1.0 17 378-394 1-17 (26)
380 KOG0832 Mitochondrial/chloropl 21.4 67 0.0015 29.3 2.1 31 20-51 89-119 (251)
381 PRK11199 tyrA bifunctional cho 21.4 8.2E+02 0.018 24.4 10.4 33 11-49 98-131 (374)
382 KOG0100 Molecular chaperones G 21.4 3E+02 0.0065 27.6 6.5 50 388-438 499-552 (663)
383 PRK06027 purU formyltetrahydro 21.3 7.2E+02 0.016 23.7 9.3 39 8-49 86-125 (286)
384 PF09001 DUF1890: Domain of un 21.2 1E+02 0.0022 25.7 2.9 28 21-49 9-36 (139)
385 PRK00784 cobyric acid synthase 21.2 9.4E+02 0.02 25.0 11.9 35 13-48 4-39 (488)
386 PRK07449 2-succinyl-5-enolpyru 21.1 1.9E+02 0.0042 30.7 5.9 26 372-397 75-106 (568)
387 COG2861 Uncharacterized protei 21.0 6.8E+02 0.015 23.3 9.9 37 105-144 139-178 (250)
388 PRK06131 dihydroxy-acid dehydr 20.9 1.9E+02 0.0041 30.6 5.4 48 102-149 95-146 (571)
389 PRK06112 acetolactate synthase 20.9 63 0.0014 34.5 2.2 25 372-396 77-107 (578)
390 KOG2941 Beta-1,4-mannosyltrans 20.9 8.3E+02 0.018 24.2 11.8 129 7-151 8-141 (444)
391 TIGR03609 S_layer_CsaB polysac 20.8 2.6E+02 0.0057 26.6 6.3 32 16-49 6-37 (298)
392 PRK13017 dihydroxy-acid dehydr 20.6 1.9E+02 0.004 30.7 5.4 48 102-149 104-155 (596)
393 CHL00067 rps2 ribosomal protei 20.6 6.7E+02 0.015 23.1 9.0 32 117-148 160-193 (230)
394 KOG4127 Renal dipeptidase [Pos 20.5 3E+02 0.0066 27.1 6.3 80 286-388 244-324 (419)
395 cd01141 TroA_d Periplasmic bin 20.5 1.2E+02 0.0027 26.4 3.7 30 117-146 68-99 (186)
396 PF08542 Rep_fac_C: Replicatio 20.4 3.7E+02 0.008 20.0 6.0 49 426-482 3-51 (89)
397 PF00318 Ribosomal_S2: Ribosom 20.3 3.2E+02 0.007 24.7 6.4 32 117-148 142-175 (211)
398 cd07062 Peptidase_S66_mccF_lik 20.0 1.1E+02 0.0023 29.7 3.4 73 292-397 50-124 (308)
No 1
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=3.6e-67 Score=527.98 Aligned_cols=454 Identities=37% Similarity=0.688 Sum_probs=343.9
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhc--CCCCceEEeCCCCCCCCCC-C
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLES--LPTSISTIFLPPVSFDDLP-D 87 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~ 87 (487)
+.||+++|+|++||++|++.||+.|+.++|+.|||++++.++ ..+... ...++.+..+|.+..++++ .
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~---------~~~~~~~~~~~~i~~~~lp~p~~~glp~~ 75 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDA---------ASAQSKFLNSTGVDIVGLPSPDISGLVDP 75 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCch---------hhhhhccccCCCceEEECCCccccCCCCC
Confidence 359999999999999999999999973459999999999762 111111 1125888888876555554 3
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhcccccccccc
Q 011381 88 DFQIETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPELDVKFS 167 (487)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 167 (487)
+.+....+...+....+.+++.++++ ..+|++||+|.++.|+..+|+++|||+++++++++..++.+.+.+.+.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 153 (481)
T PLN02992 76 SAHVVTKIGVIMREAVPTLRSKIAEM--HQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIK 153 (481)
T ss_pred CccHHHHHHHHHHHhHHHHHHHHHhc--CCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccc
Confidence 32222233333333445555555543 2378999999999999999999999999999999988877766654322111
Q ss_pred cccCCCCCcccCCCCcccCCCCCCCcccccchhHHHHHHHHHHhhhcccEEEecccccccchHHHHhhcc--cCCCCCCC
Q 011381 168 CEYRDMPEPVQLPGCVPVHGRDFADGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEG--ESSFKPPP 245 (487)
Q Consensus 168 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~--~~~~~~p~ 245 (487)
.+......++.+|++++++..+++..+.++....+..+.+.......++++++|||+++|..+.+.+... ......++
T Consensus 154 ~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~ 233 (481)
T PLN02992 154 EEHTVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVP 233 (481)
T ss_pred cccccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCc
Confidence 1111111244578887777777775443333334555666666677889999999999999999988642 11111247
Q ss_pred eEeeCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCCcccccc
Q 011381 246 VYPVGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANA 325 (487)
Q Consensus 246 ~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 325 (487)
++.|||+++...... . +.++.+||++++++++|||||||...++.+++++++.+|+.++++|||+++.......++
T Consensus 234 v~~VGPl~~~~~~~~-~---~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~ 309 (481)
T PLN02992 234 VYPIGPLCRPIQSSK-T---DHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACS 309 (481)
T ss_pred eEEecCccCCcCCCc-c---hHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCccccccc
Confidence 999999976432111 1 567999999988889999999999999999999999999999999999997531100000
Q ss_pred ccccccC-C-CC-CCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCceecccccccch
Q 011381 326 TYFSVQS-M-KD-PLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQK 402 (487)
Q Consensus 326 ~~~~~~~-~-~~-~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~ 402 (487)
.++.... . .+ ....+|++|.+|+++.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 310 ~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~ 389 (481)
T PLN02992 310 AYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQN 389 (481)
T ss_pred ccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhH
Confidence 1111000 0 01 1235899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhh-cccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhc--CCCCChHHHHHHHHHHH
Q 011381 403 MNAVLLT-DDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANAL--SPDGSSTKSLAQLARIW 479 (487)
Q Consensus 403 ~na~~v~-~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~--~~~g~~~~~~~~~~~~l 479 (487)
.||++++ + +|+|+.++.. ++.++.++|.++|+++|.+++|+.+|++++++++..++|+ ++|||+.+++++|++.+
T Consensus 390 ~na~~~~~~-~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~ 467 (481)
T PLN02992 390 MNAALLSDE-LGIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKEC 467 (481)
T ss_pred HHHHHHHHH-hCeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 9999995 7 9999999752 1248999999999999998788999999999999999999 46999999999999998
Q ss_pred hc
Q 011381 480 KN 481 (487)
Q Consensus 480 ~~ 481 (487)
++
T Consensus 468 ~~ 469 (481)
T PLN02992 468 QR 469 (481)
T ss_pred HH
Confidence 75
No 2
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.1e-65 Score=517.07 Aligned_cols=441 Identities=30% Similarity=0.460 Sum_probs=330.6
Q ss_pred CCcccCCCCCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCC
Q 011381 1 METQKSKQIPRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPV 80 (487)
Q Consensus 1 ~~~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
||+++ ++.||+++|+|++||++||+.||+.|+.+ |+.|||++++.++. .+ ... ..++.+..+|.
T Consensus 1 ~~~~~----~~~HVvlvPfpaqGHi~P~l~LAk~La~~-G~~VT~v~T~~n~~--~~-------~~~-~~~i~~~~ip~- 64 (451)
T PLN02410 1 MEEKP----ARRRVVLVPVPAQGHISPMMQLAKTLHLK-GFSITIAQTKFNYF--SP-------SDD-FTDFQFVTIPE- 64 (451)
T ss_pred CCcCC----CCCEEEEECCCccccHHHHHHHHHHHHcC-CCEEEEEeCccccc--cc-------ccC-CCCeEEEeCCC-
Confidence 66443 57799999999999999999999999765 99999999987621 00 011 12577887763
Q ss_pred CCCCCCCC----cchHHHHHHHHHHhHHHHHHHHHHHhc--cCCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHH
Q 011381 81 SFDDLPDD----FQIETRITLTLVRSLSSLRDALKVLAE--STRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALS 154 (487)
Q Consensus 81 ~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~ 154 (487)
+++.+ ......+........+.+++.++++.. ..++++||+|.++.|+..+|+++|||.+.+++++++.++
T Consensus 65 ---glp~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~ 141 (451)
T PLN02410 65 ---SLPESDFKNLGPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFV 141 (451)
T ss_pred ---CCCcccccccCHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHH
Confidence 22321 111222222222334556666666532 235799999999999999999999999999999988887
Q ss_pred HHhcccccccc---cccccCCCCCcccCCCCcccCCCCCCCcccccchhHHHHHHHHHHhhhcccEEEecccccccchHH
Q 011381 155 FLFHLPELDVK---FSCEYRDMPEPVQLPGCVPVHGRDFADGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPF 231 (487)
Q Consensus 155 ~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 231 (487)
.+.+++.+... .+........+..+|+++++...+++...+.........+.. .....+++++++|||+++|..+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~~~~ 220 (451)
T PLN02410 142 CRSVFDKLYANNVLAPLKEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRN-TVDKRTASSVIINTASCLESSSL 220 (451)
T ss_pred HHHHHHHHHhccCCCCccccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHH-HhhcccCCEEEEeChHHhhHHHH
Confidence 76654333211 010000001123467777777777775443322222222222 22346788999999999999999
Q ss_pred HHhhcccCCCCCCCeEeeCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCce
Q 011381 232 KALMEGESSFKPPPVYPVGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRF 311 (487)
Q Consensus 232 ~~~~~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~ 311 (487)
+.+.+.. + +++++|||++.........++.+.++.+||++++++++|||||||...++.+++.+++.+|+.++++|
T Consensus 221 ~~l~~~~---~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~F 296 (451)
T PLN02410 221 SRLQQQL---Q-IPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQF 296 (451)
T ss_pred HHHHhcc---C-CCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCe
Confidence 9887631 2 47999999975432111111113467899999988999999999999999999999999999999999
Q ss_pred EEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCc
Q 011381 312 LWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVP 391 (487)
Q Consensus 312 i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP 391 (487)
||+++.... . ..+....+|++|.+|+++.+ ++.+|+||.+||+|++|++|||||||||++||+++|||
T Consensus 297 lWv~r~~~~---------~--~~~~~~~lp~~f~er~~~~g-~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP 364 (451)
T PLN02410 297 LWVIRPGSV---------R--GSEWIESLPKEFSKIISGRG-YIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVP 364 (451)
T ss_pred EEEEccCcc---------c--ccchhhcCChhHHHhccCCe-EEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCC
Confidence 999985321 0 00111248999999987665 55689999999999999999999999999999999999
Q ss_pred eecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHH
Q 011381 392 IIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKS 471 (487)
Q Consensus 392 ~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 471 (487)
||++|+++||+.||+++++.+|+|+.+. .. +++++|+++|+++|.+++|++||+||+++++++++++++|||+.++
T Consensus 365 ~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~---~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~ 440 (451)
T PLN02410 365 MICKPFSSDQKVNARYLECVWKIGIQVE-GD---LDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNS 440 (451)
T ss_pred EEeccccccCHHHHHHHHHHhCeeEEeC-Cc---ccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999998469999997 33 8999999999999998778999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 011381 472 LAQLARIWKN 481 (487)
Q Consensus 472 ~~~~~~~l~~ 481 (487)
+++|+++++.
T Consensus 441 l~~fv~~~~~ 450 (451)
T PLN02410 441 LEEFVHFMRT 450 (451)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 3
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.4e-65 Score=518.00 Aligned_cols=452 Identities=30% Similarity=0.511 Sum_probs=338.1
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcC--CCCceEEeCCCCCCCCCC
Q 011381 9 IPRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESL--PTSISTIFLPPVSFDDLP 86 (487)
Q Consensus 9 ~~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 86 (487)
.+++||+++|+|++||++||+.||+.|+.+ |+.|||++++.++ .++.... ..++++..++.+...+++
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~-G~~VTfv~T~~n~---------~~~~~~~~~~~~i~~~~lp~P~~~~lP 76 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALR-GLTITVLVTPKNL---------PFLNPLLSKHPSIETLVLPFPSHPSIP 76 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCCcH---------HHHhhhcccCCCeeEEeCCCCCcCCCC
Confidence 456899999999999999999999999865 9999999999772 2222111 124777777765555666
Q ss_pred CCcchHHHH----HHHHHHhHHHHHHHHHHHhcc--CCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhccc
Q 011381 87 DDFQIETRI----TLTLVRSLSSLRDALKVLAES--TRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLP 160 (487)
Q Consensus 87 ~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~--~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~ 160 (487)
.+.+....+ ...+..+...+...+.+++++ .++++||+|.+.+|+..+|+++|||++.+++++++.++.+.++.
T Consensus 77 dG~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~ 156 (477)
T PLN02863 77 SGVENVKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLW 156 (477)
T ss_pred CCCcChhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHh
Confidence 554432221 112222333333333433332 46799999999999999999999999999999999888887653
Q ss_pred cccccc--ccccCCCCCcccCCCCcccCCCCCCCcccc--cchhHHHHHHHHHHhhhcccEEEecccccccchHHHHhhc
Q 011381 161 ELDVKF--SCEYRDMPEPVQLPGCVPVHGRDFADGFQQ--RKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALME 236 (487)
Q Consensus 161 ~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 236 (487)
...... ............+|++++++..+++..+.. ........+.+.......++++++|||+++|..+.+.+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 157 REMPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred hcccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 211100 000000001113577777777777754421 1122233333333444567889999999999999998876
Q ss_pred ccCCCCCCCeEeeCcCcCCCCCC-------CCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCC
Q 011381 237 GESSFKPPPVYPVGPLIQTGSNN-------ETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQ 309 (487)
Q Consensus 237 ~~~~~~~p~~~~vGpl~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~ 309 (487)
.. +.++++.|||+++..... ...+..++++.+||++++++++|||||||+..++.+++.+++.+|+.+++
T Consensus 237 ~~---~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~ 313 (477)
T PLN02863 237 EL---GHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGV 313 (477)
T ss_pred hc---CCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCC
Confidence 31 225799999997533110 00011145789999999888999999999988999999999999999999
Q ss_pred ceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhC
Q 011381 310 RFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHG 389 (487)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~G 389 (487)
+|||+++.... .......+|++|.+++++.|+++.+|+||.+||+|+++++|||||||||++||+++|
T Consensus 314 ~flw~~~~~~~------------~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~G 381 (477)
T PLN02863 314 HFIWCVKEPVN------------EESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAG 381 (477)
T ss_pred cEEEEECCCcc------------cccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcC
Confidence 99999985422 001234589999999999999999999999999999999999999999999999999
Q ss_pred CceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChH
Q 011381 390 VPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSST 469 (487)
Q Consensus 390 vP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~ 469 (487)
||||++|+++||+.||+++++++|+|+++...+++.++.+++.++|+++|.+ +++||+||+++++.+++|+++|||++
T Consensus 382 vP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~Av~~gGSS~ 459 (477)
T PLN02863 382 VPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSE--NQVERERAKELRRAALDAIKERGSSV 459 (477)
T ss_pred CCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 9999999999999999997654899999964333357899999999999942 38999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCC
Q 011381 470 KSLAQLARIWKNPEFETK 487 (487)
Q Consensus 470 ~~~~~~~~~l~~~~~~~~ 487 (487)
+++++|++++++..-+.|
T Consensus 460 ~~l~~~v~~i~~~~~~~~ 477 (477)
T PLN02863 460 KDLDGFVKHVVELGLEEK 477 (477)
T ss_pred HHHHHHHHHHHHhccCCC
Confidence 999999999998775544
No 4
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=4.9e-65 Score=509.56 Aligned_cols=454 Identities=39% Similarity=0.693 Sum_probs=340.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcC--CCCceEEeCCCCCCCCC-CCC
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESL--PTSISTIFLPPVSFDDL-PDD 88 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~ 88 (487)
.||+++|+|++||++|++.||+.|+.++|..|||++++.++....+ ....... ..++++..+|.+..+++ +.+
T Consensus 4 pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~----~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~ 79 (470)
T PLN03015 4 PHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTE----TEAIHAAAARTTCQITEIPSVDVDNLVEPD 79 (470)
T ss_pred cEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcc----ccccccccCCCceEEEECCCCccccCCCCC
Confidence 3999999999999999999999998655999999988765221100 0001111 12488888886554443 322
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCC-cEEEecchHHHHHHHhcccccccccc
Q 011381 89 FQIETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVP-AYVFFTTTAMALSFLFHLPELDVKFS 167 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP-~v~~~~~~~~~~~~~~~~~~~~~~~~ 167 (487)
......+...+....+.+.+.|+++ ..+++|||+|.++.|+..+|+++||| .+.+++++++..+.+.+++.......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~ 157 (470)
T PLN03015 80 ATIFTKMVVKMRAMKPAVRDAVKSM--KRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVE 157 (470)
T ss_pred ccHHHHHHHHHHhchHHHHHHHHhc--CCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccc
Confidence 2222233333334445566666544 23789999999999999999999999 57777887777767776655433222
Q ss_pred cccCCCCCcccCCCCcccCCCCCCCcccccchhHHHHHHHHHHhhhcccEEEecccccccchHHHHhhccc--CCCCCCC
Q 011381 168 CEYRDMPEPVQLPGCVPVHGRDFADGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEGE--SSFKPPP 245 (487)
Q Consensus 168 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~--~~~~~p~ 245 (487)
....+...++.+|+++++...+++..+.++....+..+.+......+++++++|||+++|..+.+.+.+.. .....++
T Consensus 158 ~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~ 237 (470)
T PLN03015 158 GEYVDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVP 237 (470)
T ss_pred cccCCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCc
Confidence 21111123455788888888888865533333334555555566788999999999999999999887621 0001246
Q ss_pred eEeeCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCCcccccc
Q 011381 246 VYPVGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANA 325 (487)
Q Consensus 246 ~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 325 (487)
++.|||++...... .. +.++.+||++++++++|||||||...++.+++.+++.+|+.++++|||+++..... ..
T Consensus 238 v~~VGPl~~~~~~~-~~---~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~--~~ 311 (470)
T PLN03015 238 VYPIGPIVRTNVHV-EK---RNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASY--LG 311 (470)
T ss_pred eEEecCCCCCcccc-cc---hHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccc--cc
Confidence 99999998532211 11 35799999999889999999999999999999999999999999999999753210 00
Q ss_pred ccccccCCCC-CCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCceecccccccchhh
Q 011381 326 TYFSVQSMKD-PLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMN 404 (487)
Q Consensus 326 ~~~~~~~~~~-~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~n 404 (487)
. ..++.+ ....+|++|.+|+++.++++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.|
T Consensus 312 ~---~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~n 388 (470)
T PLN03015 312 A---SSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMN 388 (470)
T ss_pred c---ccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHH
Confidence 0 000001 123589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhcccceeEEEee-cCCCccCHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh
Q 011381 405 AVLLTDDLKVSFRVKV-NENGLVGREDIANYAKGLIQG--EEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWK 480 (487)
Q Consensus 405 a~~v~~~~G~G~~l~~-~~~~~~~~~~l~~av~~vl~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 480 (487)
|+++++.+|+|+.+.. .+++.++.|+|+++|+++|.+ ++|+.+|+||+++++..++|+++|||+++++++|++.++
T Consensus 389 a~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 389 ATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred HHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhcc
Confidence 9999555999999962 122358999999999999963 568999999999999999999999999999999999873
No 5
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3.7e-64 Score=511.09 Aligned_cols=460 Identities=37% Similarity=0.663 Sum_probs=340.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCC----CEEEEEecCCCCCCCCchhHHHH-HhhcC--CCCceEEeCCCCCCC
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYN----FLVTIFIPTIDDGTGSSIQTIRQ-VLESL--PTSISTIFLPPVSFD 83 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~G----H~Vt~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~ 83 (487)
|.||+|+|+|++||++|++.||+.|+.+ | +.|||++++.+... ....... +.... ..++.+..+|...
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~-g~~~~~~vT~~~t~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~lp~~~-- 77 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLAS-SGGGALSLTVLVMPPPTPE--SASEVAAHVRREAASGLDIRFHHLPAVE-- 77 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhC-CCCCcEEEEEEEcCCCccc--hhHHHHHHHhhcccCCCCEEEEECCCCC--
Confidence 4599999999999999999999999875 6 79999998765210 0001111 11111 1148888888643
Q ss_pred CCCCCcchHHHH-HHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhccccc
Q 011381 84 DLPDDFQIETRI-TLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPEL 162 (487)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~ 162 (487)
++.+.+....+ ........+.+.+.+..+ ..++++||+|.++.|+..+|+++|||++.++++++..++.+.+.+..
T Consensus 78 -~p~~~e~~~~~~~~~~~~~~~~l~~~L~~l--~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~ 154 (480)
T PLN00164 78 -PPTDAAGVEEFISRYIQLHAPHVRAAIAGL--SCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPAL 154 (480)
T ss_pred -CCCccccHHHHHHHHHHhhhHHHHHHHHhc--CCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhh
Confidence 23333222222 212223334444444433 12569999999999999999999999999999999998888776553
Q ss_pred ccccccccCCCCCcccCCCCcccCCCCCCCcccccchhHHHHHHHHHHhhhcccEEEecccccccchHHHHhhcccCC--
Q 011381 163 DVKFSCEYRDMPEPVQLPGCVPVHGRDFADGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEGESS-- 240 (487)
Q Consensus 163 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~-- 240 (487)
.............++.+|+++++...+++..++.+....+..+........+++++++|||+++|+.+.+.+......
T Consensus 155 ~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~ 234 (480)
T PLN00164 155 DEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPG 234 (480)
T ss_pred cccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhcccccc
Confidence 322111111111234478887788888887654433233444444455667889999999999999999988764211
Q ss_pred CCCCCeEeeCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCCc
Q 011381 241 FKPPPVYPVGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHE 320 (487)
Q Consensus 241 ~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 320 (487)
...|+++.|||++....... ....+.++.+||++++++++|||||||+..++.+++.+++.+|+.++++|||+++....
T Consensus 235 ~~~~~v~~vGPl~~~~~~~~-~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~ 313 (480)
T PLN00164 235 RPAPTVYPIGPVISLAFTPP-AEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPA 313 (480)
T ss_pred CCCCceEEeCCCccccccCC-CccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 11258999999974321110 01125679999999988899999999998899999999999999999999999985321
Q ss_pred cccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCceeccccccc
Q 011381 321 EAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSE 400 (487)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~D 400 (487)
. + ...+ .+.+....+|++|.+++++.++++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++|
T Consensus 314 ~--~--~~~~-~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~D 388 (480)
T PLN00164 314 A--G--SRHP-TDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAE 388 (480)
T ss_pred c--c--cccc-cccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCcccc
Confidence 0 0 0000 000112248899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHhhhcccceeEEEeecC--CCccCHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 011381 401 QKMNAVLLTDDLKVSFRVKVNE--NGLVGREDIANYAKGLIQGE--EGKLLRKKMRALKDAAANALSPDGSSTKSLAQLA 476 (487)
Q Consensus 401 Q~~na~~v~~~~G~G~~l~~~~--~~~~~~~~l~~av~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 476 (487)
|+.||+++++.+|+|+.+...+ ++.+++++|.++|+++|.++ +|+.+|+||+++++.+++++++|||+++++++|+
T Consensus 389 Q~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v 468 (480)
T PLN00164 389 QHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLA 468 (480)
T ss_pred chhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9999998755489999986431 23579999999999999864 4789999999999999999999999999999999
Q ss_pred HHHhcCCC
Q 011381 477 RIWKNPEF 484 (487)
Q Consensus 477 ~~l~~~~~ 484 (487)
+++.+...
T Consensus 469 ~~~~~~~~ 476 (480)
T PLN00164 469 REIRHGAV 476 (480)
T ss_pred HHHHhccC
Confidence 99987653
No 6
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.8e-64 Score=503.46 Aligned_cols=423 Identities=27% Similarity=0.444 Sum_probs=327.2
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCC-C
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPD-D 88 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 88 (487)
++.||+++|+|++||++||+.||+.|+.+ |+.|||++++.++. .+......++++..++. +++. +
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~-G~~vT~v~t~~~~~---------~~~~~~~~~i~~~~ipd----glp~~~ 69 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSK-GFKTTHTLTTFIFN---------TIHLDPSSPISIATISD----GYDQGG 69 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcC-CCEEEEEECCchhh---------hcccCCCCCEEEEEcCC----CCCCcc
Confidence 45699999999999999999999999765 99999999987622 21111223588888873 3333 1
Q ss_pred ---cchHHHHHHHHH-HhHHHHHHHHHHHhccCCc-eEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhcccccc
Q 011381 89 ---FQIETRITLTLV-RSLSSLRDALKVLAESTRL-VALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPELD 163 (487)
Q Consensus 89 ---~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~-D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 163 (487)
......+...+. ...+.+.+.|+......+| ++||+|.++.|+..+|+++|||.+.+++++++.+..+.+ +...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~~ 148 (449)
T PLN02173 70 FSSAGSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYIN 148 (449)
T ss_pred cccccCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHhc
Confidence 111112222221 3345566666654322345 999999999999999999999999999988777655432 1111
Q ss_pred cccccccCCCCCcccCCCCcccCCCCCCCccccc--chhHHHHHHHHHHhhhcccEEEecccccccchHHHHhhcccCCC
Q 011381 164 VKFSCEYRDMPEPVQLPGCVPVHGRDFADGFQQR--KNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEGESSF 241 (487)
Q Consensus 164 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~ 241 (487)
. . ..++.+|+++++...+++..+... ....+..+.+......+++++++|||+++|..+.+.+...
T Consensus 149 ~------~--~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~---- 216 (449)
T PLN02173 149 N------G--SLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV---- 216 (449)
T ss_pred c------C--CccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc----
Confidence 1 0 123345787777777887655432 2223444555566677889999999999999998888542
Q ss_pred CCCCeEeeCcCcCCC-------CCCC---CCC--CCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCC
Q 011381 242 KPPPVYPVGPLIQTG-------SNNE---TNN--DRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQ 309 (487)
Q Consensus 242 ~~p~~~~vGpl~~~~-------~~~~---~~~--~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~ 309 (487)
++++.|||+++.. .... ..+ ..++++.+||++++++++|||||||+..++.+++.+++.+| ++.
T Consensus 217 --~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~ 292 (449)
T PLN02173 217 --CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNF 292 (449)
T ss_pred --CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCC
Confidence 3699999997421 0000 001 11345899999999899999999999999999999999999 778
Q ss_pred ceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhC
Q 011381 310 RFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHG 389 (487)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~G 389 (487)
+|+|+++.... ..+|++|.+++++.|+++++|+||.+||+|++|++|||||||||++||+++|
T Consensus 293 ~flWvvr~~~~-----------------~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~G 355 (449)
T PLN02173 293 SYLWVVRASEE-----------------SKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLG 355 (449)
T ss_pred CEEEEEeccch-----------------hcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcC
Confidence 89999986322 2478899999888889999999999999999999999999999999999999
Q ss_pred CceecccccccchhhhHhhhcccceeEEEeecC-CCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCCh
Q 011381 390 VPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE-NGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSS 468 (487)
Q Consensus 390 vP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~-~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~ 468 (487)
||||++|+++||+.||+++++.+|+|+.+..++ ++.++.|+|.++|+++|.+++|+.+|+||+++++..++++++|||+
T Consensus 356 VP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS 435 (449)
T PLN02173 356 VPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGST 435 (449)
T ss_pred CCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 999999999999999999998569999987543 2357999999999999998888999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 011381 469 TKSLAQLARIWK 480 (487)
Q Consensus 469 ~~~~~~~~~~l~ 480 (487)
.+++++|++++.
T Consensus 436 ~~~l~~~v~~~~ 447 (449)
T PLN02173 436 DININTFVSKIQ 447 (449)
T ss_pred HHHHHHHHHHhc
Confidence 999999999874
No 7
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.8e-64 Score=506.70 Aligned_cols=444 Identities=26% Similarity=0.432 Sum_probs=331.5
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCcc
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDFQ 90 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (487)
+.||+++|+|++||++||+.||+.|+.+ |+.|||++++.++... .........++++..+|.+..++++.+.+
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~~------~~~~~~~~~~i~~~~lp~p~~dglp~~~~ 78 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQK-GHKISFISTPRNLHRL------PKIPSQLSSSITLVSFPLPSVPGLPSSAE 78 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhC-CCEEEEEeCCchHHhh------hhccccCCCCeeEEECCCCccCCCCCCcc
Confidence 4699999999999999999999999875 9999999999762111 11111122358888888665556664432
Q ss_pred hHHHH----HHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhccccccccc
Q 011381 91 IETRI----TLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPELDVKF 166 (487)
Q Consensus 91 ~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 166 (487)
....+ ...+..+...++..+++++++.++++||+|.++.|+..+|+++|||++.++++++..++.+.+...+....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~ 158 (472)
T PLN02670 79 SSTDVPYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGG 158 (472)
T ss_pred cccccchhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcc
Confidence 21111 11222344455666666665558999999999999999999999999999999888777764332111100
Q ss_pred ccccCCCCCcc-cCCCCcc------cCCCCCCCccccc--chhHHHHHHHHHHhhhcccEEEecccccccchHHHHhhcc
Q 011381 167 SCEYRDMPEPV-QLPGCVP------VHGRDFADGFQQR--KNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEG 237 (487)
Q Consensus 167 ~~~~~~~~~~~-~~p~~~~------~~~~~l~~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 237 (487)
. ........ .+|++.| +...+++..+... ....+..+.+......+++++++|||+++|..+.+.+.+.
T Consensus 159 ~--~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~ 236 (472)
T PLN02670 159 D--LRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDL 236 (472)
T ss_pred c--CCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHh
Confidence 0 00000111 1233322 2333555443211 1122344445545566788999999999999999998762
Q ss_pred cCCCCCCCeEeeCcCcCCC-CCCCCCC---CCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEE
Q 011381 238 ESSFKPPPVYPVGPLIQTG-SNNETNN---DRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLW 313 (487)
Q Consensus 238 ~~~~~~p~~~~vGpl~~~~-~~~~~~~---~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 313 (487)
. . ++++.|||+.+.. ....... ....++.+||++++++++|||||||+..++.+++.+++.+|+.++++|||
T Consensus 237 ~---~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlW 312 (472)
T PLN02670 237 Y---R-KPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFW 312 (472)
T ss_pred h---C-CCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 1 1 4799999997531 1110000 00146889999998889999999999999999999999999999999999
Q ss_pred EEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCcee
Q 011381 314 VAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPII 393 (487)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v 393 (487)
+++.... +..+....+|++|.+++++.++++.+|+||.+||+|++|++|||||||||++||+++|||||
T Consensus 313 v~r~~~~-----------~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l 381 (472)
T PLN02670 313 VLRNEPG-----------TTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLI 381 (472)
T ss_pred EEcCCcc-----------cccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEE
Confidence 9986321 00112235899999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhHhhhcccceeEEEeecC-CCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q 011381 394 AWPLYSEQKMNAVLLTDDLKVSFRVKVNE-NGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSL 472 (487)
Q Consensus 394 ~~P~~~DQ~~na~~v~~~~G~G~~l~~~~-~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 472 (487)
++|+++||+.||+++++ +|+|+.+...+ ++.++.++|+++|+++|.+++|++||+||+++++.+++ .+...+++
T Consensus 382 ~~P~~~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~ 456 (472)
T PLN02670 382 LFPVLNEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYV 456 (472)
T ss_pred eCcchhccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHH
Confidence 99999999999999999 99999997533 34589999999999999987788999999999999994 78899999
Q ss_pred HHHHHHHhcCC
Q 011381 473 AQLARIWKNPE 483 (487)
Q Consensus 473 ~~~~~~l~~~~ 483 (487)
++|++.|++..
T Consensus 457 ~~~~~~l~~~~ 467 (472)
T PLN02670 457 DELVHYLRENR 467 (472)
T ss_pred HHHHHHHHHhc
Confidence 99999999876
No 8
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6.6e-64 Score=506.06 Aligned_cols=431 Identities=26% Similarity=0.430 Sum_probs=320.2
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHH-hcCCCEEEEEecCCCCCCCCchhHHHHHhhcCC---CCceEEeCCCCCCCC
Q 011381 9 IPRAYVAMVPTPGIGHLIPLVELAKRLV-HQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLP---TSISTIFLPPVSFDD 84 (487)
Q Consensus 9 ~~~~~il~~~~~~~GH~~p~l~La~~L~-~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 84 (487)
..+.||+|+|+|++||++|++.||++|+ .++|++|||++++.++. .+ +... ..+.+..++. +
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~---------~~-~~~~~~~~~~~~~~~~~----g 71 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARD---------LL-STVEKPRRPVDLVFFSD----G 71 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhh---------hh-ccccCCCCceEEEECCC----C
Confidence 3467999999999999999999999953 23499999999997622 11 1111 1355554442 3
Q ss_pred CCCCc-chHHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhcccccc
Q 011381 85 LPDDF-QIETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPELD 163 (487)
Q Consensus 85 ~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 163 (487)
++.+. .....+.. .....+...+++++++.+||+||+|.++.|+..+|+++|||.+.++++++..++.+.+++...
T Consensus 72 lp~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~ 148 (456)
T PLN02210 72 LPKDDPRAPETLLK---SLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKT 148 (456)
T ss_pred CCCCcccCHHHHHH---HHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhcc
Confidence 44332 11111211 122233344455555558999999999999999999999999999998888777766543211
Q ss_pred cccccccCCCCCcccCCCCcccCCCCCCCcccccchhHHHHHH-HHHHhhhcccEEEecccccccchHHHHhhcccCCCC
Q 011381 164 VKFSCEYRDMPEPVQLPGCVPVHGRDFADGFQQRKNEAYRFLL-SFSKQYLLAAGIMVNSFMELETGPFKALMEGESSFK 242 (487)
Q Consensus 164 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~-~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~ 242 (487)
..... ..+...+..+|+++++...+++..+.......+..+. +.......++++++|||.++|..+.+.+.+.
T Consensus 149 ~~~~~-~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~----- 222 (456)
T PLN02210 149 NSFPD-LEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADL----- 222 (456)
T ss_pred CCCCc-ccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhc-----
Confidence 11111 1111123446777767777777655443332233333 3333456678999999999999999887651
Q ss_pred CCCeEeeCcCcCCC---CCCC--------CCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCce
Q 011381 243 PPPVYPVGPLIQTG---SNNE--------TNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRF 311 (487)
Q Consensus 243 ~p~~~~vGpl~~~~---~~~~--------~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~ 311 (487)
+++++|||+++.. .... ..+..+.++.+||++++++++|||||||....+.+++++++.+|+.++++|
T Consensus 223 -~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~f 301 (456)
T PLN02210 223 -KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPF 301 (456)
T ss_pred -CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCE
Confidence 4799999997521 1000 012224568899999888899999999998889999999999999999999
Q ss_pred EEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCc
Q 011381 312 LWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVP 391 (487)
Q Consensus 312 i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP 391 (487)
||+++.... ...++++.++.+..+.++++|+||.+||+|++|++|||||||||++||+++|||
T Consensus 302 lw~~~~~~~-----------------~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP 364 (456)
T PLN02210 302 LWVIRPKEK-----------------AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVP 364 (456)
T ss_pred EEEEeCCcc-----------------ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCC
Confidence 999985321 112345555553233456799999999999999999999999999999999999
Q ss_pred eecccccccchhhhHhhhcccceeEEEeecC-CCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHH
Q 011381 392 IIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE-NGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTK 470 (487)
Q Consensus 392 ~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~-~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 470 (487)
||++|+++||+.||+++++.+|+|+.+...+ ++.+++++|+++|+++|.+++|+++|+||+++++..++|+++|||+.+
T Consensus 365 ~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~ 444 (456)
T PLN02210 365 VVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSAR 444 (456)
T ss_pred EEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 9999999999999999986589999987532 345899999999999999877899999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 011381 471 SLAQLARIWK 480 (487)
Q Consensus 471 ~~~~~~~~l~ 480 (487)
++++|++++.
T Consensus 445 ~l~~~v~~~~ 454 (456)
T PLN02210 445 NLDLFISDIT 454 (456)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 9
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.8e-63 Score=502.66 Aligned_cols=451 Identities=28% Similarity=0.450 Sum_probs=333.1
Q ss_pred CCCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhc--CCC---CceEEeCCCCCC
Q 011381 8 QIPRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLES--LPT---SISTIFLPPVSF 82 (487)
Q Consensus 8 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~ 82 (487)
.+.+.||+++|+|++||++||+.||+.|+.+ |..|||++++.++..+.+ ...+... ... .+.|..+|.
T Consensus 4 ~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~-G~~vT~v~T~~~~~~~~~---a~~~~~~~~~~~~~~~i~~~~~pd--- 76 (480)
T PLN02555 4 ESSLVHVMLVSFPGQGHVNPLLRLGKLLASK-GLLVTFVTTESWGKKMRQ---ANKIQDGVLKPVGDGFIRFEFFED--- 76 (480)
T ss_pred CCCCCEEEEECCcccccHHHHHHHHHHHHhC-CCeEEEEeccchhhhhhc---cccccccccccCCCCeEEEeeCCC---
Confidence 3456799999999999999999999999865 999999999976221110 0000000 011 144444442
Q ss_pred CCCCCCcc---hHHHHHHHH-HHhHHHHHHHHHHHhccCC-ceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHh
Q 011381 83 DDLPDDFQ---IETRITLTL-VRSLSSLRDALKVLAESTR-LVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLF 157 (487)
Q Consensus 83 ~~~~~~~~---~~~~~~~~~-~~~~~~l~~~l~~~~~~~~-~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~ 157 (487)
+++.+.+ ....+...+ ....+.+.+.|+.+....+ ++|||+|.++.|+..+|+++|||.+++++++++.++.+.
T Consensus 77 -glp~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~ 155 (480)
T PLN02555 77 -GWAEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYY 155 (480)
T ss_pred -CCCCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHH
Confidence 3332211 111121111 1234455666655422234 499999999999999999999999999999999888877
Q ss_pred cccccccccccccCCCCCcccCCCCcccCCCCCCCcccc--cchhHHHHHHHHHHhhhcccEEEecccccccchHHHHhh
Q 011381 158 HLPELDVKFSCEYRDMPEPVQLPGCVPVHGRDFADGFQQ--RKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALM 235 (487)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 235 (487)
+++.-....... .....++.+|+++++...+++.+++. .....+..+.+......+++++++|||+++|..+.+.+.
T Consensus 156 ~~~~~~~~~~~~-~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 234 (480)
T PLN02555 156 HYYHGLVPFPTE-TEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMS 234 (480)
T ss_pred HHhhcCCCcccc-cCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHh
Confidence 653211011110 00112345788887888888876532 223334555555566778889999999999999998886
Q ss_pred cccCCCCCCCeEeeCcCcCCCCC--C---CCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCc
Q 011381 236 EGESSFKPPPVYPVGPLIQTGSN--N---ETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQR 310 (487)
Q Consensus 236 ~~~~~~~~p~~~~vGpl~~~~~~--~---~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 310 (487)
.. .| ++.|||++..... . ...++.+.++.+||++++++++|||||||+..++.+++.+++.+++.++++
T Consensus 235 ~~-----~~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~ 308 (480)
T PLN02555 235 KL-----CP-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVS 308 (480)
T ss_pred hC-----CC-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCe
Confidence 52 24 9999999753211 1 001222567999999998888999999999999999999999999999999
Q ss_pred eEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCC
Q 011381 311 FLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGV 390 (487)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~Gv 390 (487)
|||+++.... ........+|+++.+++++ |+++++|+||.+||+|+++++|||||||||++||+++||
T Consensus 309 flW~~~~~~~-----------~~~~~~~~lp~~~~~~~~~-~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GV 376 (480)
T PLN02555 309 FLWVMRPPHK-----------DSGVEPHVLPEEFLEKAGD-KGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGV 376 (480)
T ss_pred EEEEEecCcc-----------cccchhhcCChhhhhhcCC-ceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCC
Confidence 9999985311 0000123578888877754 457779999999999999999999999999999999999
Q ss_pred ceecccccccchhhhHhhhcccceeEEEeec--CCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCCh
Q 011381 391 PIIAWPLYSEQKMNAVLLTDDLKVSFRVKVN--ENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSS 468 (487)
Q Consensus 391 P~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~--~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~ 468 (487)
|||++|+++||+.||+++++.+|+|+.+... +.+.++.++|.++|+++|.+++|+.+|+||+++++..++|+++|||+
T Consensus 377 P~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS 456 (480)
T PLN02555 377 PVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSS 456 (480)
T ss_pred CEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 9999999999999999999856999999531 12248999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC
Q 011381 469 TKSLAQLARIWKNPEFE 485 (487)
Q Consensus 469 ~~~~~~~~~~l~~~~~~ 485 (487)
..++++|++++.+..++
T Consensus 457 ~~~l~~~v~~i~~~~~~ 473 (480)
T PLN02555 457 DRNFQEFVDKLVRKSVE 473 (480)
T ss_pred HHHHHHHHHHHHhccce
Confidence 99999999999887543
No 10
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-63 Score=500.20 Aligned_cols=441 Identities=37% Similarity=0.688 Sum_probs=323.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCC--CEEEEEe--cCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCC-CCC
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYN--FLVTIFI--PTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSF-DDL 85 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~G--H~Vt~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 85 (487)
+.||+++|+|++||++||+.||+.|+.+ | +.||+.. ++.+.....+ ........ ..++++..+|.... ++.
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~-g~~~~vti~~~~~~~~~~~~~~--~~~~~~~~-~~~i~~~~lp~~~~~~~~ 78 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSK-NPSLSIHIILVPPPYQPESTAT--YISSVSSS-FPSITFHHLPAVTPYSSS 78 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhC-CCceEEEEEEecCcchhhhhhh--hhccccCC-CCCeEEEEcCCCCCCCCc
Confidence 3499999999999999999999999765 8 5676644 3322110000 00011111 12588888875431 111
Q ss_pred CCCcch-HHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhccccccc
Q 011381 86 PDDFQI-ETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPELDV 164 (487)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 164 (487)
...... ...+........+.+.+.+.++....++++||+|.++.|+..+|+++|||.+++++++++.++.+.+.+....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~ 158 (451)
T PLN03004 79 STSRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDE 158 (451)
T ss_pred cccccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccc
Confidence 111111 1122222334445566666655322345999999999999999999999999999999999888877654322
Q ss_pred ccccccCCCCCcccCCCCcccCCCCCCCcccccchhHHHHHHHHHHhhhcccEEEecccccccchHHHHhhcccCCCCCC
Q 011381 165 KFSCEYRDMPEPVQLPGCVPVHGRDFADGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEGESSFKPP 244 (487)
Q Consensus 165 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~p 244 (487)
..+........++.+|+++++...+++..+..+....+..+.+.......++++++|||+++|..+.+.+.... ..+
T Consensus 159 ~~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~---~~~ 235 (451)
T PLN03004 159 TTPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEEL---CFR 235 (451)
T ss_pred cccccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcC---CCC
Confidence 11110000012345688887888888876654433334455555566677889999999999999999886521 124
Q ss_pred CeEeeCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCCccccc
Q 011381 245 PVYPVGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAAN 324 (487)
Q Consensus 245 ~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 324 (487)
+++.|||++............+.++.+||++++++++|||||||+..++.+++++|+.+|+.++++|||+++....
T Consensus 236 ~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~---- 311 (451)
T PLN03004 236 NIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPE---- 311 (451)
T ss_pred CEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcc----
Confidence 7999999975321110000113568999999988999999999999999999999999999999999999985311
Q ss_pred cccccccCCCCCCC-CCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCceecccccccchh
Q 011381 325 ATYFSVQSMKDPLD-FLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKM 403 (487)
Q Consensus 325 ~~~~~~~~~~~~~~-~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~ 403 (487)
...+..... .+|++|.+|+++.|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|++.||+.
T Consensus 312 -----~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~ 386 (451)
T PLN03004 312 -----LEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRF 386 (451)
T ss_pred -----ccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchh
Confidence 000000122 38999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHH
Q 011381 404 NAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTK 470 (487)
Q Consensus 404 na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 470 (487)
||+++++++|+|+.++..+++.+++++|+++|+++|++ ++||+|++++++..++|+++|||+++
T Consensus 387 na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~---~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 387 NRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGE---CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred hHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999854899999976433458999999999999998 89999999999999999999999864
No 11
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.3e-63 Score=498.93 Aligned_cols=425 Identities=25% Similarity=0.388 Sum_probs=322.6
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhh--cCCCCceEEeCCCCCCCCCCC
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLE--SLPTSISTIFLPPVSFDDLPD 87 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 87 (487)
+++||+++|+|++||++|++.||+.|+++ ||+|||++++.++ ..+.. ..+.++.+..++.+..++++.
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~-G~~VT~vtt~~~~---------~~i~~~~a~~~~i~~~~l~~p~~dgLp~ 72 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEK-GHRVTFLLPKKAQ---------KQLEHHNLFPDSIVFHPLTIPPVNGLPA 72 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhC-CCEEEEEeccchh---------hhhhcccCCCCceEEEEeCCCCccCCCC
Confidence 45799999999999999999999999875 9999999987652 12111 112245666655432235555
Q ss_pred CcchH----HHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhcccccc
Q 011381 88 DFQIE----TRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPELD 163 (487)
Q Consensus 88 ~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 163 (487)
+.+.. ..+...+....+.+.+.+++++++.++|+||+| ++.|+..+|+++|||++.++++++..++ +.+.+.
T Consensus 73 g~~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~-- 148 (442)
T PLN02208 73 GAETTSDIPISMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG-- 148 (442)
T ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc--
Confidence 43321 122233334455666677776666689999999 5789999999999999999999887654 444331
Q ss_pred cccccccCCCCCcccCCCCcc----cCCCCCCCcccccchhHHHHHHHH-HHhhhcccEEEecccccccchHHHHhhccc
Q 011381 164 VKFSCEYRDMPEPVQLPGCVP----VHGRDFADGFQQRKNEAYRFLLSF-SKQYLLAAGIMVNSFMELETGPFKALMEGE 238 (487)
Q Consensus 164 ~~~~~~~~~~~~~~~~p~~~~----~~~~~l~~~~~~r~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 238 (487)
.... ...|++++ +...+++.. ......+..+.+. .....+++++++|||+++|..+.+.+....
T Consensus 149 ~~~~---------~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~ 217 (442)
T PLN02208 149 GKLG---------VPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQY 217 (442)
T ss_pred cccC---------CCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhc
Confidence 1100 11244432 233344432 1112223333322 234567899999999999999998886631
Q ss_pred CCCCCCCeEeeCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCC
Q 011381 239 SSFKPPPVYPVGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSP 318 (487)
Q Consensus 239 ~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 318 (487)
.|++++|||++......... +.++.+||++++++++|||||||+..++.+++.+++.+++.++.+++|+++..
T Consensus 218 ----~~~v~~vGpl~~~~~~~~~~---~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~ 290 (442)
T PLN02208 218 ----HKKVLLTGPMFPEPDTSKPL---EEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPP 290 (442)
T ss_pred ----CCCEEEEeecccCcCCCCCC---HHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 26899999998653211122 67899999998888999999999998899999999999999999999999864
Q ss_pred CccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCceeccccc
Q 011381 319 HEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLY 398 (487)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~ 398 (487)
.. + .+....+|++|.+++++.|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|++
T Consensus 291 ~~-----------~-~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~ 358 (442)
T PLN02208 291 RG-----------S-STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFL 358 (442)
T ss_pred Cc-----------c-cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcc
Confidence 21 0 01124589999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 011381 399 SEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGE--EGKLLRKKMRALKDAAANALSPDGSSTKSLAQLA 476 (487)
Q Consensus 399 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 476 (487)
+||+.||+++++++|+|+.++..+++.+++++|.++|+++|+++ +|+.+|++++++++.+. ++||+.+++++|+
T Consensus 359 ~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v 434 (442)
T PLN02208 359 SDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFV 434 (442)
T ss_pred hhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHH
Confidence 99999999877659999999765445689999999999999864 37899999999999985 4789999999999
Q ss_pred HHHhcC
Q 011381 477 RIWKNP 482 (487)
Q Consensus 477 ~~l~~~ 482 (487)
+++++.
T Consensus 435 ~~l~~~ 440 (442)
T PLN02208 435 EELQEY 440 (442)
T ss_pred HHHHHh
Confidence 999764
No 12
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.7e-63 Score=498.09 Aligned_cols=447 Identities=30% Similarity=0.571 Sum_probs=329.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCC--CEEEEEecCCCCC-CCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCC
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYN--FLVTIFIPTIDDG-TGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPD 87 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~G--H~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (487)
+.||+|+|+|++||++|++.||+.|+.+ | ..|||++++.++. ...+ ......... .+++|..+|.......+.
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~-gg~~~vT~~~t~~~~~~~~~~--~~~~~~~~~-~~i~~~~lp~~~~~~~~~ 78 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQ-DDRIRITILLMKLQGQSHLDT--YVKSIASSQ-PFVRFIDVPELEEKPTLG 78 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhC-CCCeEEEEEEcCCCcchhhHH--hhhhccCCC-CCeEEEEeCCCCCCCccc
Confidence 3599999999999999999999999765 7 9999999887621 0100 011111111 258999888432111101
Q ss_pred Ccc-hHHHHHHHHHHhHHHHHHHHHHHhcc----CC-ceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhcccc
Q 011381 88 DFQ-IETRITLTLVRSLSSLRDALKVLAES----TR-LVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPE 161 (487)
Q Consensus 88 ~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~----~~-~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~ 161 (487)
..+ ....+...+....+.+++.+.+++++ .+ ++|||+|.++.|+..+|+++|||.+.++++++..++.+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~ 158 (468)
T PLN02207 79 GTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLAD 158 (468)
T ss_pred cccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhh
Confidence 111 12122222223323334444444332 23 4999999999999999999999999999999988888776654
Q ss_pred cccccccc-cCCCCCcccCCCC-cccCCCCCCCcccccchhHHHHHHHHHHhhhcccEEEecccccccchHHHHhhcccC
Q 011381 162 LDVKFSCE-YRDMPEPVQLPGC-VPVHGRDFADGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEGES 239 (487)
Q Consensus 162 ~~~~~~~~-~~~~~~~~~~p~~-~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 239 (487)
........ ......++.+|++ +++...+++..+.... .+..+.+......+.+++++||++++|.++.+.+... +
T Consensus 159 ~~~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~-~ 235 (468)
T PLN02207 159 RHSKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVED--GYDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDE-Q 235 (468)
T ss_pred ccccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCc--cHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhc-c
Confidence 32210000 0000123457887 5688888886553221 1444455555677889999999999999988877541 1
Q ss_pred CCCCCCeEeeCcCcCCCCCCCC--CCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeC
Q 011381 240 SFKPPPVYPVGPLIQTGSNNET--NNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKS 317 (487)
Q Consensus 240 ~~~~p~~~~vGpl~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 317 (487)
..|+++.|||++.......+ ....+.++.+||++++++++|||||||...++.+++++++.+|+.++++|||+++.
T Consensus 236 --~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~ 313 (468)
T PLN02207 236 --NYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRT 313 (468)
T ss_pred --CCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 23689999999864321111 00113679999999988899999999999999999999999999999999999985
Q ss_pred CCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCceecccc
Q 011381 318 PHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPL 397 (487)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~ 397 (487)
... .....+|++|.+++++.+ ++++|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 314 ~~~--------------~~~~~lp~~f~er~~~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~ 378 (468)
T PLN02207 314 EEV--------------TNDDLLPEGFLDRVSGRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPM 378 (468)
T ss_pred CCc--------------cccccCCHHHHhhcCCCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCc
Confidence 321 112358899998887655 66699999999999999999999999999999999999999999
Q ss_pred cccchhhhHhhhcccceeEEEeec----CCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHH
Q 011381 398 YSEQKMNAVLLTDDLKVSFRVKVN----ENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLA 473 (487)
Q Consensus 398 ~~DQ~~na~~v~~~~G~G~~l~~~----~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 473 (487)
++||+.||+++++++|+|+.+... .++.++.++|.++|+++|.+ ++++||+||+++++.+++|+++|||++.+++
T Consensus 379 ~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~ 457 (468)
T PLN02207 379 YAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIE 457 (468)
T ss_pred cccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 999999999877669999987421 12346999999999999973 4689999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 011381 474 QLARIWKNP 482 (487)
Q Consensus 474 ~~~~~l~~~ 482 (487)
+|+++++.-
T Consensus 458 ~~v~~~~~~ 466 (468)
T PLN02207 458 KFIHDVIGI 466 (468)
T ss_pred HHHHHHHhc
Confidence 999998764
No 13
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=4.8e-63 Score=497.13 Aligned_cols=432 Identities=24% Similarity=0.403 Sum_probs=323.8
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCc
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDF 89 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (487)
++.||+++|+|++||++|++.||+.|+++ |++|||++++.++..+.+ . .....++.+..++.+..++++.+.
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~~i~~------~-~~~~~~i~~~~i~lP~~dGLP~g~ 74 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEK-GHRVTFFLPKKAHKQLQP------L-NLFPDSIVFEPLTLPPVDGLPFGA 74 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCchhhhhcc------c-ccCCCceEEEEecCCCcCCCCCcc
Confidence 45699999999999999999999999875 999999998866221111 0 111224777555433334566553
Q ss_pred chHHHH----HHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhcccccccc
Q 011381 90 QIETRI----TLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPELDVK 165 (487)
Q Consensus 90 ~~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 165 (487)
+....+ ...+....+.+...++++++..+||+||+|. +.|+..+|+++|||++.++++++..++.+.+ +. ..
T Consensus 75 e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~--~~ 150 (446)
T PLN00414 75 ETASDLPNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PR--AE 150 (446)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cH--hh
Confidence 322111 2223345556677777766666899999996 8899999999999999999999988777655 21 10
Q ss_pred cccccCCCCCcccCCCCcc----cCCCC--CCCcccccchhHHHHHHHHHHhhhcccEEEecccccccchHHHHhhcccC
Q 011381 166 FSCEYRDMPEPVQLPGCVP----VHGRD--FADGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEGES 239 (487)
Q Consensus 166 ~~~~~~~~~~~~~~p~~~~----~~~~~--l~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 239 (487)
.. .+.|+++. ++..+ ++..+ ++ ....+.+......+++++++|||+++|..+.+.+.+.
T Consensus 151 ~~---------~~~pg~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~-- 215 (446)
T PLN00414 151 LG---------FPPPDYPLSKVALRGHDANVCSLF-AN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQ-- 215 (446)
T ss_pred cC---------CCCCCCCCCcCcCchhhcccchhh-cc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHh--
Confidence 00 01133321 11111 11111 11 1233344445567789999999999999999988762
Q ss_pred CCCCCCeEeeCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCC
Q 011381 240 SFKPPPVYPVGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPH 319 (487)
Q Consensus 240 ~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 319 (487)
..++++.|||+.+....... ...+.++.+||++++++++|||||||...+..+++.+++.+|+.++.+|+|++....
T Consensus 216 --~~~~v~~VGPl~~~~~~~~~-~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~ 292 (446)
T PLN00414 216 --CQRKVLLTGPMLPEPQNKSG-KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPK 292 (446)
T ss_pred --cCCCeEEEcccCCCcccccC-cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 12479999999754321100 011356889999999999999999999999999999999999999999999998632
Q ss_pred ccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCceecccccc
Q 011381 320 EEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYS 399 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~ 399 (487)
. + .+....+|++|.+++++.+.++.+|+||.+||+|++|++|||||||||++||+++|||||++|++.
T Consensus 293 ~-----------~-~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~ 360 (446)
T PLN00414 293 G-----------S-STVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLA 360 (446)
T ss_pred C-----------c-ccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCccc
Confidence 1 0 011235899999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 011381 400 EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGE--EGKLLRKKMRALKDAAANALSPDGSSTKSLAQLAR 477 (487)
Q Consensus 400 DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 477 (487)
||+.||+++++.+|+|+.+..++++.+++++|+++|+++|.++ +|+.+|++|+++++.+.+ +||++ ..+++|++
T Consensus 361 dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~v~ 436 (446)
T PLN00414 361 DQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKFVE 436 (446)
T ss_pred chHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHHHH
Confidence 9999999997449999999754334589999999999999863 478899999999999764 66634 44899999
Q ss_pred HHhcCCCCCC
Q 011381 478 IWKNPEFETK 487 (487)
Q Consensus 478 ~l~~~~~~~~ 487 (487)
++++...++|
T Consensus 437 ~~~~~~~~~~ 446 (446)
T PLN00414 437 ALENEVNNTK 446 (446)
T ss_pred HHHHhcccCC
Confidence 9999988887
No 14
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8e-63 Score=503.24 Aligned_cols=455 Identities=33% Similarity=0.583 Sum_probs=333.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCC--CEEEEEecCCCCCCCC-chhHHHHHhhcCCCCceEEeCCCCCCCCCCC
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYN--FLVTIFIPTIDDGTGS-SIQTIRQVLESLPTSISTIFLPPVSFDDLPD 87 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~G--H~Vt~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (487)
|+||+++|+|++||++||+.||+.|+.+ | ..|||++++.++.... ..............++++..+|..... +.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~-G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~--~~ 78 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDS-DDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQP--TT 78 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhC-CCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCC--cc
Confidence 5799999999999999999999999875 8 8899999987632110 000011110000225888888754321 11
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHhcc-----CC-ceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhcccc
Q 011381 88 DFQIETRITLTLVRSLSSLRDALKVLAES-----TR-LVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPE 161 (487)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~-~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~ 161 (487)
. .. .+...+....+.+.+.+++++.. .+ .+|||+|.++.|+..+|+++|||++.++++++..++.+.+.+.
T Consensus 79 ~--~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~ 155 (481)
T PLN02554 79 E--DP-TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQM 155 (481)
T ss_pred c--ch-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhh
Confidence 1 11 23233334455666666665432 13 3899999999999999999999999999999999988877765
Q ss_pred cccc--cc-cccCCCCCcccCCCCc-ccCCCCCCCcccccchhHHHHHHHHHHhhhcccEEEecccccccchHHHHhhcc
Q 011381 162 LDVK--FS-CEYRDMPEPVQLPGCV-PVHGRDFADGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEG 237 (487)
Q Consensus 162 ~~~~--~~-~~~~~~~~~~~~p~~~-~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 237 (487)
.... .. ....+...++.+|++. +++..+++..+..+ ..+..+.+......+++++++|++.++|..+...+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~ 233 (481)
T PLN02554 156 LYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK--EWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGS 233 (481)
T ss_pred hccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH--HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhc
Confidence 4321 11 0111111234468873 67777777655433 23444555556677889999999999999999998874
Q ss_pred cCCCCCCCeEeeCcCcCCCCCCC-CCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEe
Q 011381 238 ESSFKPPPVYPVGPLIQTGSNNE-TNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAK 316 (487)
Q Consensus 238 ~~~~~~p~~~~vGpl~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 316 (487)
+. ..|++++|||++....... .....+.++.+||++++++++|||||||+..++.+++++++.+|+.++++|||+++
T Consensus 234 ~~--~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~ 311 (481)
T PLN02554 234 SG--DLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLR 311 (481)
T ss_pred cc--CCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 32 2258999999943221110 00112568999999988889999999999889999999999999999999999998
Q ss_pred CCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCceeccc
Q 011381 317 SPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWP 396 (487)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P 396 (487)
..... ...-...+..+....+|++|.+++++. +++++|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 312 ~~~~~---~~~~~~~~~~~~~~~lp~~~~~r~~~~-g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P 387 (481)
T PLN02554 312 RASPN---IMKEPPGEFTNLEEILPEGFLDRTKDI-GKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWP 387 (481)
T ss_pred CCccc---ccccccccccchhhhCChHHHHHhccC-ceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecC
Confidence 63210 000000000001123689999888755 46679999999999999999999999999999999999999999
Q ss_pred ccccchhhhH-hhhcccceeEEEeec--------CCCccCHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHHhcCCCC
Q 011381 397 LYSEQKMNAV-LLTDDLKVSFRVKVN--------ENGLVGREDIANYAKGLIQ-GEEGKLLRKKMRALKDAAANALSPDG 466 (487)
Q Consensus 397 ~~~DQ~~na~-~v~~~~G~G~~l~~~--------~~~~~~~~~l~~av~~vl~-~~~~~~~~~~a~~l~~~~~~~~~~~g 466 (487)
+++||+.||+ ++++ +|+|+.++.. +++.+++++|.++|+++|. + ++||+||+++++.+++++++||
T Consensus 388 ~~~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~~~av~~gG 463 (481)
T PLN02554 388 LYAEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKCHVALMDGG 463 (481)
T ss_pred ccccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999995 5677 9999998741 1124899999999999997 5 8999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCC
Q 011381 467 SSTKSLAQLARIWKNPE 483 (487)
Q Consensus 467 ~~~~~~~~~~~~l~~~~ 483 (487)
|+++++++|+++++++.
T Consensus 464 ss~~~l~~lv~~~~~~~ 480 (481)
T PLN02554 464 SSHTALKKFIQDVTKNI 480 (481)
T ss_pred hHHHHHHHHHHHHHhhC
Confidence 99999999999998764
No 15
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=6.3e-63 Score=499.22 Aligned_cols=446 Identities=28% Similarity=0.479 Sum_probs=327.3
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhh-c--CCCCceEEeCCCCCC-CC
Q 011381 9 IPRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLE-S--LPTSISTIFLPPVSF-DD 84 (487)
Q Consensus 9 ~~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~-~~ 84 (487)
.++.||+++|+|++||++|++.||+.|+.+ |+.|||++++.++..+ ..... . .+..+.|..+|.+.. ++
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~~------~~~~~~~~~~~~~i~~~~lp~p~~~dg 78 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAER-GVIVSLVTTPQNASRF------AKTIDRARESGLPIRLVQIPFPCKEVG 78 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhC-CCeEEEEECCCcHHHH------hhhhhhccccCCCeEEEEcCCCCccCC
Confidence 455799999999999999999999999765 9999999998762111 11110 0 111378888875432 35
Q ss_pred CCCCcchHH-----HHHHHHHHhHHHHHHHHHHHhcc--CCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHh
Q 011381 85 LPDDFQIET-----RITLTLVRSLSSLRDALKVLAES--TRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLF 157 (487)
Q Consensus 85 ~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~--~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~ 157 (487)
++.+.+... .+...+......++..+++++++ .++++||+|.++.|+..+|+++|||.+.+++++++..+.+.
T Consensus 79 lp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~ 158 (491)
T PLN02534 79 LPIGCENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSH 158 (491)
T ss_pred CCCCccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHH
Confidence 554422111 22222223334455555655543 36899999999999999999999999999999888776543
Q ss_pred cccccccccccccCCCCCcccCCCCcc---cCCCCCCCcccccchhHHHHHHHHHHh-hhcccEEEecccccccchHHHH
Q 011381 158 HLPELDVKFSCEYRDMPEPVQLPGCVP---VHGRDFADGFQQRKNEAYRFLLSFSKQ-YLLAAGIMVNSFMELETGPFKA 233 (487)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~l~~~~~~r~~~~~~~~~~~~~~-~~~~~~~l~~s~~~le~~~~~~ 233 (487)
++........ ......++.+|++++ +...+++..+... ..+..+...... ...++++++|||+++|..+.+.
T Consensus 159 ~~~~~~~~~~--~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~ 234 (491)
T PLN02534 159 NIRLHNAHLS--VSSDSEPFVVPGMPQSIEITRAQLPGAFVSL--PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEA 234 (491)
T ss_pred HHHHhccccc--CCCCCceeecCCCCccccccHHHCChhhcCc--ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHH
Confidence 2211111000 001112344567653 5555666543221 112333333332 2346789999999999999988
Q ss_pred hhcccCCCCCCCeEeeCcCcCCCCC---C---CCCC-CCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHH
Q 011381 234 LMEGESSFKPPPVYPVGPLIQTGSN---N---ETNN-DRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEM 306 (487)
Q Consensus 234 ~~~~~~~~~~p~~~~vGpl~~~~~~---~---~~~~-~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~ 306 (487)
+.+.. + ++++.|||++..... . .... ..+.++.+||++++++++|||||||.....++++.+++.+|+.
T Consensus 235 l~~~~---~-~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~ 310 (491)
T PLN02534 235 YEKAI---K-KKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEA 310 (491)
T ss_pred HHhhc---C-CcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHh
Confidence 87631 2 479999999753210 0 0000 0134688999999988999999999999999999999999999
Q ss_pred cCCceEEEEeCCCccccccccccccCCCCCC-CCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHH
Q 011381 307 SGQRFLWVAKSPHEEAANATYFSVQSMKDPL-DFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILES 385 (487)
Q Consensus 307 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~ea 385 (487)
++++|||+++.... ..+.. ..+|++|.+++++.|+++.+|+||.+||+|+++++|||||||||++||
T Consensus 311 ~~~~flW~~r~~~~------------~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea 378 (491)
T PLN02534 311 SKKPFIWVIKTGEK------------HSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEG 378 (491)
T ss_pred CCCCEEEEEecCcc------------ccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHH
Confidence 99999999985321 00011 136899999988899999999999999999999999999999999999
Q ss_pred HhhCCceecccccccchhhhHhhhcccceeEEEeec-------CC--C-ccCHHHHHHHHHHhcc--CchhHHHHHHHHH
Q 011381 386 IVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVN-------EN--G-LVGREDIANYAKGLIQ--GEEGKLLRKKMRA 453 (487)
Q Consensus 386 l~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~-------~~--~-~~~~~~l~~av~~vl~--~~~~~~~~~~a~~ 453 (487)
+++|||||++|++.||+.||+++++.+|+|+.+... ++ + .+++|+|.++|+++|. +++|+++|+||++
T Consensus 379 ~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~e 458 (491)
T PLN02534 379 ICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQE 458 (491)
T ss_pred HHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 999999999999999999999998779999987521 11 2 4899999999999997 4668999999999
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHhc
Q 011381 454 LKDAAANALSPDGSSTKSLAQLARIWKN 481 (487)
Q Consensus 454 l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 481 (487)
+++.+++++.+|||+.+++++|++++.+
T Consensus 459 lk~~a~~Av~~GGSS~~nl~~fv~~i~~ 486 (491)
T PLN02534 459 LGVMARKAMELGGSSHINLSILIQDVLK 486 (491)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999874
No 16
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-62 Score=496.71 Aligned_cols=431 Identities=25% Similarity=0.427 Sum_probs=320.8
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcC--CCCceEEeCCCCCCCCCCC
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESL--PTSISTIFLPPVSFDDLPD 87 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 87 (487)
++.||+++|+|++||++||+.||+.|+.+ |++|||++++.++ .++.... ..++.+..+|....++.+
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~---------~~~~~~~~~~~~i~~v~lp~g~~~~~~- 73 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSR-GFEPVVITPEFIH---------RRISATLDPKLGITFMSISDGQDDDPP- 73 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhC-CCEEEEEeCcchh---------hhhhhccCCCCCEEEEECCCCCCCCcc-
Confidence 35699999999999999999999999875 9999999988762 1222111 125888888753211111
Q ss_pred CcchHHHHHHHHH-HhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhcccccccc-
Q 011381 88 DFQIETRITLTLV-RSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPELDVK- 165 (487)
Q Consensus 88 ~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~- 165 (487)
.+ ...+...+. ...+.+.+.++++....++++||+|.+..|+..+|+++|||.++++++++..++.+.+.+.+...
T Consensus 74 -~~-~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~ 151 (448)
T PLN02562 74 -RD-FFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTG 151 (448)
T ss_pred -cc-HHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcc
Confidence 11 112222222 23445556655542222458999999999999999999999999999988877776655432211
Q ss_pred -cccc-cCCCCCcc-cCCCCcccCCCCCCCccccc--chhHHHHHHHHHHhhhcccEEEecccccccchHHHHhhcccCC
Q 011381 166 -FSCE-YRDMPEPV-QLPGCVPVHGRDFADGFQQR--KNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEGESS 240 (487)
Q Consensus 166 -~~~~-~~~~~~~~-~~p~~~~~~~~~l~~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~ 240 (487)
.... ......++ .+|+++++...+++..+... ....+..+.+......+++++++|||+++|..+.+.+....+.
T Consensus 152 ~~~~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~ 231 (448)
T PLN02562 152 LISETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNN 231 (448)
T ss_pred ccccccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhcc
Confidence 1100 00000122 35777767777777654322 2223555566666677788999999999999887766532111
Q ss_pred CCCCCeEeeCcCcCCCCC---CCCCCCCccchhhcccCCCCCeEEEEEeCCCc-CCCHHHHHHHHHHHHHcCCceEEEEe
Q 011381 241 FKPPPVYPVGPLIQTGSN---NETNNDRSLECLKWLDEQPSESVLFVCFGSGG-TLSQEQLNELALGLEMSGQRFLWVAK 316 (487)
Q Consensus 241 ~~~p~~~~vGpl~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~~~~ 316 (487)
-..|+++.|||++..... ....+..+.++.+||++++++++|||||||+. .++.+++++++.+|++++++|||+++
T Consensus 232 ~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~ 311 (448)
T PLN02562 232 GQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLN 311 (448)
T ss_pred ccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 012689999999764321 00001114457799999988899999999975 67899999999999999999999997
Q ss_pred CCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCceeccc
Q 011381 317 SPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWP 396 (487)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P 396 (487)
.... ..+|++|.++++ .|+++++|+||.+||+|++|++|||||||||++||+++|||||++|
T Consensus 312 ~~~~-----------------~~l~~~~~~~~~-~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P 373 (448)
T PLN02562 312 PVWR-----------------EGLPPGYVERVS-KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYP 373 (448)
T ss_pred CCch-----------------hhCCHHHHHHhc-cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCC
Confidence 6322 247888888775 4567789999999999999999999999999999999999999999
Q ss_pred ccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 011381 397 LYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLA 476 (487)
Q Consensus 397 ~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 476 (487)
+++||+.||+++++.+|+|+.+. + ++.++|.++|+++|.+ ++||+||+++++++.++ ++|||+++++++|+
T Consensus 374 ~~~DQ~~na~~~~~~~g~g~~~~--~---~~~~~l~~~v~~~l~~---~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v 444 (448)
T PLN02562 374 VAGDQFVNCAYIVDVWKIGVRIS--G---FGQKEVEEGLRKVMED---SGMGERLMKLRERAMGE-EARLRSMMNFTTLK 444 (448)
T ss_pred cccchHHHHHHHHHHhCceeEeC--C---CCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHH
Confidence 99999999999987468888874 4 7999999999999988 89999999999999886 56799999999999
Q ss_pred HHHh
Q 011381 477 RIWK 480 (487)
Q Consensus 477 ~~l~ 480 (487)
++++
T Consensus 445 ~~~~ 448 (448)
T PLN02562 445 DELK 448 (448)
T ss_pred HHhC
Confidence 9875
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.4e-62 Score=502.19 Aligned_cols=450 Identities=30% Similarity=0.501 Sum_probs=322.6
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHh---hcCCCCceEEeCCCCCCCCC
Q 011381 9 IPRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVL---ESLPTSISTIFLPPVSFDDL 85 (487)
Q Consensus 9 ~~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 85 (487)
++++||+|+|+|++||++|++.||+.|+.+ ||+|||++++.++..+.. ....+. ......+.+..+|..+ +++
T Consensus 3 ~~~~hVvlvp~pa~GHi~P~L~LAk~L~~r-G~~VT~vtt~~~~~~i~~--~~a~~~~~~~~~~~~~~~~~~p~~~-~gl 78 (482)
T PLN03007 3 HEKLHILFFPFMAHGHMIPTLDMAKLFSSR-GAKSTILTTPLNAKIFEK--PIEAFKNLNPGLEIDIQIFNFPCVE-LGL 78 (482)
T ss_pred CCCcEEEEECCCccccHHHHHHHHHHHHhC-CCEEEEEECCCchhhhhh--hhhhhcccCCCCcceEEEeeCCCCc-CCC
Confidence 346799999999999999999999999875 999999999977321111 000000 0011123344444211 123
Q ss_pred CCCcch-----------HHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHH
Q 011381 86 PDDFQI-----------ETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALS 154 (487)
Q Consensus 86 ~~~~~~-----------~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~ 154 (487)
+.+.+. ...+...+....+.+.+.+++++++.+||+||+|.++.|+..+|+++|||.+++++++++..+
T Consensus 79 P~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~ 158 (482)
T PLN03007 79 PEGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLC 158 (482)
T ss_pred CCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHH
Confidence 332211 112222233455667777777776678999999999999999999999999999998877665
Q ss_pred HHhcccccccccccccCCCCCcccCCCCcc---cCCCCCCCcccccchhHHHHHHHHHHhhhcccEEEecccccccchHH
Q 011381 155 FLFHLPELDVKFSCEYRDMPEPVQLPGCVP---VHGRDFADGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPF 231 (487)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 231 (487)
.+.+......... ......++.+|++++ +...+++.. +........+........+.+++++|++.++|..+.
T Consensus 159 ~~~~~~~~~~~~~--~~~~~~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~ 234 (482)
T PLN03007 159 ASYCIRVHKPQKK--VASSSEPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYA 234 (482)
T ss_pred HHHHHHhcccccc--cCCCCceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHH
Confidence 5443221110000 000001222455432 222333321 121112222333334566788999999999999988
Q ss_pred HHhhcccCCCCCCCeEeeCcCcCCCCC-------CCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHH
Q 011381 232 KALMEGESSFKPPPVYPVGPLIQTGSN-------NETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGL 304 (487)
Q Consensus 232 ~~~~~~~~~~~~p~~~~vGpl~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al 304 (487)
+.+.+.. .+++++|||+...... ....+..+.++.+||++++++++|||||||+.....+++.+++.+|
T Consensus 235 ~~~~~~~----~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l 310 (482)
T PLN03007 235 DFYKSFV----AKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGL 310 (482)
T ss_pred HHHHhcc----CCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHH
Confidence 8876632 2479999998653211 0001011467899999988899999999999888899999999999
Q ss_pred HHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHH
Q 011381 305 EMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILE 384 (487)
Q Consensus 305 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~e 384 (487)
+.++++|||+++.... ..+....+|++|.+++++.|+++.+|+||.+||+|++|++|||||||||++|
T Consensus 311 ~~~~~~flw~~~~~~~------------~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~E 378 (482)
T PLN03007 311 EGSGQNFIWVVRKNEN------------QGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLE 378 (482)
T ss_pred HHCCCCEEEEEecCCc------------ccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHH
Confidence 9999999999996422 0012235899999999999999999999999999999999999999999999
Q ss_pred HHhhCCceecccccccchhhhHhhhcccceeEEEeec-----CCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Q 011381 385 SIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVN-----ENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAA 459 (487)
Q Consensus 385 al~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~-----~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~ 459 (487)
|+++|||||++|+++||+.||+++++.+++|+.+... +.+.+++++|+++|+++|.+++|++||+||+++++.++
T Consensus 379 al~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~ 458 (482)
T PLN03007 379 GVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAK 458 (482)
T ss_pred HHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987545666554311 11238999999999999998778899999999999999
Q ss_pred HhcCCCCChHHHHHHHHHHHhcC
Q 011381 460 NALSPDGSSTKSLAQLARIWKNP 482 (487)
Q Consensus 460 ~~~~~~g~~~~~~~~~~~~l~~~ 482 (487)
+++.+|||+++++++|++++.+.
T Consensus 459 ~a~~~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 459 AAVEEGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred HHHhCCCcHHHHHHHHHHHHHhc
Confidence 99999999999999999998754
No 18
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.4e-62 Score=488.77 Aligned_cols=431 Identities=25% Similarity=0.384 Sum_probs=321.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCC--CceEEeCCCCCCCCCCC
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPT--SISTIFLPPVSFDDLPD 87 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 87 (487)
.++||+++|+|++||++|++.||+.|+.+ |+.|||++++.+...+.+ . ...+. .+.+..+|.+ ++++.
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~-g~~vT~~tt~~~~~~~~~------~-~~~~~~~~v~~~~~p~~--~glp~ 73 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEK-GHTVTFLLPKKALKQLEH------L-NLFPHNIVFRSVTVPHV--DGLPV 73 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhC-CCEEEEEeCcchhhhhcc------c-ccCCCCceEEEEECCCc--CCCCC
Confidence 36799999999999999999999999765 999999999876221111 1 11121 2666677643 35554
Q ss_pred CcchH----HHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhcccccc
Q 011381 88 DFQIE----TRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPELD 163 (487)
Q Consensus 88 ~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 163 (487)
+.+.. ......+..+...++..++++++..++|+||+|. +.|+..+|+++|||.+.+++++++.++.+.+ +.
T Consensus 74 g~e~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~-- 149 (453)
T PLN02764 74 GTETVSEIPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG-- 149 (453)
T ss_pred cccccccCChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc--
Confidence 43221 1111122233344455555555555789999995 8899999999999999999999988777643 11
Q ss_pred cccccccCCCCCcccCCCCcc----cCCCCCCCccc-cc--chhHHHHH-HHHHHhhhcccEEEecccccccchHHHHhh
Q 011381 164 VKFSCEYRDMPEPVQLPGCVP----VHGRDFADGFQ-QR--KNEAYRFL-LSFSKQYLLAAGIMVNSFMELETGPFKALM 235 (487)
Q Consensus 164 ~~~~~~~~~~~~~~~~p~~~~----~~~~~l~~~~~-~r--~~~~~~~~-~~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 235 (487)
.... .+.|+++. ++..+++.... .+ ....+..+ .+.......++++++|||+++|..+.+.+.
T Consensus 150 ~~~~---------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~ 220 (453)
T PLN02764 150 GELG---------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIE 220 (453)
T ss_pred ccCC---------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHH
Confidence 0000 11244431 33333433210 01 00112222 222245567889999999999999998886
Q ss_pred cccCCCCCCCeEeeCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEE
Q 011381 236 EGESSFKPPPVYPVGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVA 315 (487)
Q Consensus 236 ~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 315 (487)
.. ..++++.|||+++....... .+.++.+||++++++++|||||||...++.+++.++..+|+.++.+++|++
T Consensus 221 ~~----~~~~v~~VGPL~~~~~~~~~---~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~ 293 (453)
T PLN02764 221 KH----CRKKVLLTGPVFPEPDKTRE---LEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAV 293 (453)
T ss_pred hh----cCCcEEEeccCccCcccccc---chhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 52 12479999999754311111 146799999999999999999999988999999999999999999999999
Q ss_pred eCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCceecc
Q 011381 316 KSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAW 395 (487)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~ 395 (487)
+.... . .+....+|++|.+++++.++++.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 294 r~~~~-----------~-~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~ 361 (453)
T PLN02764 294 KPPRG-----------S-STIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLV 361 (453)
T ss_pred eCCCC-----------C-cchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeC
Confidence 96321 0 01124689999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhcCCCCChHHHHH
Q 011381 396 PLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG--EEGKLLRKKMRALKDAAANALSPDGSSTKSLA 473 (487)
Q Consensus 396 P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 473 (487)
|++.||+.||+++++++|+|+.+..++++.++.++|+++|+++|++ ++|+.+|++++++++.++ ++||+.++++
T Consensus 362 P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~ 437 (453)
T PLN02764 362 PQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVD 437 (453)
T ss_pred CcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHH
Confidence 9999999999999754899998864322348999999999999987 447889999999999997 5899999999
Q ss_pred HHHHHHhcCCCCC
Q 011381 474 QLARIWKNPEFET 486 (487)
Q Consensus 474 ~~~~~l~~~~~~~ 486 (487)
+|++++++....+
T Consensus 438 ~lv~~~~~~~~~~ 450 (453)
T PLN02764 438 NFIESLQDLVSGT 450 (453)
T ss_pred HHHHHHHHhcccc
Confidence 9999999887553
No 19
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=3.7e-62 Score=489.92 Aligned_cols=433 Identities=25% Similarity=0.380 Sum_probs=321.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcC--CCCceEEeCCCCCCCCCCCCc
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESL--PTSISTIFLPPVSFDDLPDDF 89 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 89 (487)
.||+++|+|++||++|++.||+.|+.++|+.|||++++.+ ..+...... ..++++..++. +++.+.
T Consensus 4 ~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~--------~~~~~~~~~~~~~~i~~~~i~d----glp~g~ 71 (455)
T PLN02152 4 PHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSV--------IHRSMIPNHNNVENLSFLTFSD----GFDDGV 71 (455)
T ss_pred cEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccch--------hhhhhhccCCCCCCEEEEEcCC----CCCCcc
Confidence 4999999999999999999999997545999999998853 111111111 12588888863 334331
Q ss_pred -----chHHHHHHHHHHhHHHHHHHHHHHhcc-CCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhcccccc
Q 011381 90 -----QIETRITLTLVRSLSSLRDALKVLAES-TRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPELD 163 (487)
Q Consensus 90 -----~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 163 (487)
.....+........+.+.+.++++... .++++||+|.++.|+..+|+++|||.+.+++++++.++.+.++....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~ 151 (455)
T PLN02152 72 ISNTDDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN 151 (455)
T ss_pred ccccccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC
Confidence 111222223333445666666665322 34599999999999999999999999999999999888776543211
Q ss_pred cccccccCCCCCcccCCCCcccCCCCCCCccccc--chhHHHHHHHHHHhhh--cccEEEecccccccchHHHHhhcccC
Q 011381 164 VKFSCEYRDMPEPVQLPGCVPVHGRDFADGFQQR--KNEAYRFLLSFSKQYL--LAAGIMVNSFMELETGPFKALMEGES 239 (487)
Q Consensus 164 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r--~~~~~~~~~~~~~~~~--~~~~~l~~s~~~le~~~~~~~~~~~~ 239 (487)
...+.+|+++++...+++..+... ....+..+.+...... .++++++|||+++|..+.+.+.+
T Consensus 152 ----------~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~--- 218 (455)
T PLN02152 152 ----------NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN--- 218 (455)
T ss_pred ----------CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---
Confidence 113346787777777887765322 1122333334444332 24699999999999999888754
Q ss_pred CCCCCCeEeeCcCcCCCC---CC--C--CCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceE
Q 011381 240 SFKPPPVYPVGPLIQTGS---NN--E--TNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFL 312 (487)
Q Consensus 240 ~~~~p~~~~vGpl~~~~~---~~--~--~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 312 (487)
.+++.|||+++... .. . ..++.+.++.+||++++++++|||||||+..++.+++++++.+|+.++++||
T Consensus 219 ----~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~fl 294 (455)
T PLN02152 219 ----IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFL 294 (455)
T ss_pred ----CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeE
Confidence 25999999975321 00 0 0011145799999999888999999999999999999999999999999999
Q ss_pred EEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCce
Q 011381 313 WVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPI 392 (487)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~ 392 (487)
|+++...... .....+. .....+|++|.++.++.+ ++.+|+||.+||+|++|++||||||+||+.||+++||||
T Consensus 295 Wv~r~~~~~~----~~~~~~~-~~~~~~~~~f~e~~~~~g-~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~ 368 (455)
T PLN02152 295 WVITDKLNRE----AKIEGEE-ETEIEKIAGFRHELEEVG-MIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPV 368 (455)
T ss_pred EEEecCcccc----ccccccc-ccccccchhHHHhccCCe-EEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCE
Confidence 9998632100 0000000 001135788888876554 666999999999999999999999999999999999999
Q ss_pred ecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHH
Q 011381 393 IAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSL 472 (487)
Q Consensus 393 v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 472 (487)
|++|+++||+.||+++++.+|+|+.+..++++.++.|+|+++|+++|++ ++..||+||+++++..++++++|||+++++
T Consensus 369 l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~-~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl 447 (455)
T PLN02152 369 VAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEE-KSVELRESAEKWKRLAIEAGGEGGSSDKNV 447 (455)
T ss_pred EeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 9999999999999999986688887765433457999999999999974 456799999999999999999999999999
Q ss_pred HHHHHHHh
Q 011381 473 AQLARIWK 480 (487)
Q Consensus 473 ~~~~~~l~ 480 (487)
++|++++.
T Consensus 448 ~~li~~i~ 455 (455)
T PLN02152 448 EAFVKTLC 455 (455)
T ss_pred HHHHHHhC
Confidence 99999863
No 20
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1e-61 Score=493.39 Aligned_cols=437 Identities=31% Similarity=0.492 Sum_probs=324.0
Q ss_pred CCCCCcEEEEEcCCCccChHHHHHHHHHHHhcC--CCEEEEEecCCCCCCCCchhHHHHHhhc-CCCCceEEeCCCCCCC
Q 011381 7 KQIPRAYVAMVPTPGIGHLIPLVELAKRLVHQY--NFLVTIFIPTIDDGTGSSIQTIRQVLES-LPTSISTIFLPPVSFD 83 (487)
Q Consensus 7 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~~--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 83 (487)
+...+.||+|+|+|++||++|++.||++|+. + ||+|||++++.++ ..+... ...++.|..+|....+
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~-~~~G~~VT~~~t~~~~---------~~i~~~~~~~gi~fv~lp~~~p~ 75 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLAS-RKPDILITFVVTEEWL---------GLIGSDPKPDNIRFATIPNVIPS 75 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHc-CCCCcEEEEEeCCchH---------hHhhccCCCCCEEEEECCCCCCC
Confidence 4456789999999999999999999999964 6 9999999999762 222221 1236899888852111
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhcccccc
Q 011381 84 DLPDDFQIETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPELD 163 (487)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 163 (487)
+..........+........+.+.+.++++. .++|+||+|.++.|+..+|+++|||++.++++++..++.+.+.+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~ 153 (459)
T PLN02448 76 ELVRAADFPGFLEAVMTKMEAPFEQLLDRLE--PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLP 153 (459)
T ss_pred ccccccCHHHHHHHHHHHhHHHHHHHHHhcC--CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhh
Confidence 2111111221122222233444555555431 46899999999999999999999999999999988777766654332
Q ss_pred cc--cccccCC-CCCcc-cCCCCcccCCCCCCCcccccchhHHHHHHHHHHhhhcccEEEecccccccchHHHHhhcccC
Q 011381 164 VK--FSCEYRD-MPEPV-QLPGCVPVHGRDFADGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEGES 239 (487)
Q Consensus 164 ~~--~~~~~~~-~~~~~-~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 239 (487)
.. .+..... ...+. .+|+++++...+++..+.+.....++.+........+++++++|||+++|+.+.+.+....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~- 232 (459)
T PLN02448 154 QNGHFPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKF- 232 (459)
T ss_pred hccCCCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhc-
Confidence 11 0100000 00111 2577766777777765544333335555555556667789999999999999888886632
Q ss_pred CCCCCCeEeeCcCcCCCCC--C-C--CCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEE
Q 011381 240 SFKPPPVYPVGPLIQTGSN--N-E--TNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWV 314 (487)
Q Consensus 240 ~~~~p~~~~vGpl~~~~~~--~-~--~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 314 (487)
+ +++++|||+.+.... . . .....+.++.+||+.++.+++|||||||+.....+++++++++|+.++++|||+
T Consensus 233 --~-~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~ 309 (459)
T PLN02448 233 --P-FPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWV 309 (459)
T ss_pred --C-CceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 2 479999999753211 0 0 000012478899999888899999999998888999999999999999999998
Q ss_pred EeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCceec
Q 011381 315 AKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIA 394 (487)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~ 394 (487)
++... .++.++.+ .|+++.+|+||.+||+|+++++||||||+||++||+++|||||+
T Consensus 310 ~~~~~----------------------~~~~~~~~-~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~ 366 (459)
T PLN02448 310 ARGEA----------------------SRLKEICG-DMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLT 366 (459)
T ss_pred EcCch----------------------hhHhHhcc-CCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEe
Confidence 76421 12222222 36778899999999999999999999999999999999999999
Q ss_pred ccccccchhhhHhhhcccceeEEEeec--CCCccCHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHhcCCCCChHH
Q 011381 395 WPLYSEQKMNAVLLTDDLKVSFRVKVN--ENGLVGREDIANYAKGLIQG--EEGKLLRKKMRALKDAAANALSPDGSSTK 470 (487)
Q Consensus 395 ~P~~~DQ~~na~~v~~~~G~G~~l~~~--~~~~~~~~~l~~av~~vl~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 470 (487)
+|++.||+.||+++++.+|+|+.+... +++.+++++|+++|+++|.+ ++|++||+||+++++.+++++.+|||+++
T Consensus 367 ~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~ 446 (459)
T PLN02448 367 FPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDT 446 (459)
T ss_pred ccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 999999999999999857999888632 12347999999999999986 35789999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 011381 471 SLAQLARIWKNP 482 (487)
Q Consensus 471 ~~~~~~~~l~~~ 482 (487)
++++|++++++.
T Consensus 447 ~l~~~v~~~~~~ 458 (459)
T PLN02448 447 NLDAFIRDISQG 458 (459)
T ss_pred HHHHHHHHHhcc
Confidence 999999999864
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.6e-61 Score=490.36 Aligned_cols=448 Identities=34% Similarity=0.609 Sum_probs=327.6
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCC---EEEEEecCCCCCCCCchhHHHHHhhcC---CCCceEEeCCCCCCC
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNF---LVTIFIPTIDDGTGSSIQTIRQVLESL---PTSISTIFLPPVSFD 83 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH---~Vt~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 83 (487)
++.||+|+|+|++||++||+.||+.|+.+ |. .||+++++.... + ......... ..+++|..+|.+...
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~-G~~~t~vt~~~t~~~~~---~--~~~~~~~~~~~~~~~i~~~~lp~~~~p 75 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINL-DRRIHTITILYWSLPFA---P--QADAFLKSLIASEPRIRLVTLPEVQDP 75 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhC-CCCeEEEEEEECCCCcc---h--hhhHHHhhcccCCCCeEEEECCCCCCC
Confidence 35699999999999999999999999765 83 566666543310 0 011111111 125899988864311
Q ss_pred CCCCC-cch-HHHHHHHHHHhHHHHHHHHHHHhcc-----C-CceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHH
Q 011381 84 DLPDD-FQI-ETRITLTLVRSLSSLRDALKVLAES-----T-RLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSF 155 (487)
Q Consensus 84 ~~~~~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~-----~-~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~ 155 (487)
..... ... ...+...+....+.+++.++++..+ . +++|||+|.++.|+..+|+++|||.+++++++++.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~ 155 (475)
T PLN02167 76 PPMELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGM 155 (475)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHH
Confidence 00000 111 1233333444555666777665421 1 35999999999999999999999999999999988888
Q ss_pred Hhccccccccccccc--CCCCCcccCCCC-cccCCCCCCCcccccchhHHHHHHHHHHhhhcccEEEecccccccchHHH
Q 011381 156 LFHLPELDVKFSCEY--RDMPEPVQLPGC-VPVHGRDFADGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFK 232 (487)
Q Consensus 156 ~~~~~~~~~~~~~~~--~~~~~~~~~p~~-~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~ 232 (487)
+.+.+.......... .....++.+|++ .+++..+++..++++. .+..+.........++++++|||+++|..+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~ 233 (475)
T PLN02167 156 MKYLPERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE--SYEAWVEIAERFPEAKGILVNSFTELEPNAFD 233 (475)
T ss_pred HHHHHHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc--hHHHHHHHHHhhcccCEeeeccHHHHHHHHHH
Confidence 776654322111000 000123456887 3567777765443321 23344455556677889999999999999998
Q ss_pred HhhcccCCCCCCCeEeeCcCcCCCCCC-CCC-CCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCc
Q 011381 233 ALMEGESSFKPPPVYPVGPLIQTGSNN-ETN-NDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQR 310 (487)
Q Consensus 233 ~~~~~~~~~~~p~~~~vGpl~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 310 (487)
++..... ..|++++|||+++..... ... ...+.++.+||+.++.+++|||||||+..++.+++.+++.+|+.++++
T Consensus 234 ~l~~~~~--~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~ 311 (475)
T PLN02167 234 YFSRLPE--NYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCR 311 (475)
T ss_pred HHHhhcc--cCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCc
Confidence 8865211 125899999997643211 010 011357999999988889999999999888999999999999999999
Q ss_pred eEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCC
Q 011381 311 FLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGV 390 (487)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~Gv 390 (487)
|||+++.... ...+....+|++|.+++++.+ ++++|+||.+||+|++|++|||||||||++||+++||
T Consensus 312 flw~~~~~~~-----------~~~~~~~~lp~~~~er~~~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~Gv 379 (475)
T PLN02167 312 FLWSIRTNPA-----------EYASPYEPLPEGFMDRVMGRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGV 379 (475)
T ss_pred EEEEEecCcc-----------cccchhhhCChHHHHHhccCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCC
Confidence 9999986321 000112358999999998776 5569999999999999999999999999999999999
Q ss_pred ceecccccccchhhhHh-hhcccceeEEEeec----CCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCC
Q 011381 391 PIIAWPLYSEQKMNAVL-LTDDLKVSFRVKVN----ENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPD 465 (487)
Q Consensus 391 P~v~~P~~~DQ~~na~~-v~~~~G~G~~l~~~----~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~ 465 (487)
|||++|+++||+.||++ ++. +|+|+.+... +++.+++++|.++|+++|.++ +.||+||+++++.+++++++|
T Consensus 380 P~l~~P~~~DQ~~na~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~g 456 (475)
T PLN02167 380 PIATWPMYAEQQLNAFTMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDG 456 (475)
T ss_pred CEEeccccccchhhHHHHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999987 566 9999998643 112479999999999999763 489999999999999999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 011381 466 GSSTKSLAQLARIWKNP 482 (487)
Q Consensus 466 g~~~~~~~~~~~~l~~~ 482 (487)
||+.+++++|++++++.
T Consensus 457 GsS~~~l~~~v~~i~~~ 473 (475)
T PLN02167 457 GSSFVAVKRFIDDLLGD 473 (475)
T ss_pred CcHHHHHHHHHHHHHhc
Confidence 99999999999999864
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.3e-46 Score=385.23 Aligned_cols=400 Identities=21% Similarity=0.235 Sum_probs=260.4
Q ss_pred cEEEEE-cCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCC--CC-CC-
Q 011381 12 AYVAMV-PTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSF--DD-LP- 86 (487)
Q Consensus 12 ~~il~~-~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~- 86 (487)
.+|+++ |.++.+|+.-+..|+++|++| ||+||++++.... ... .....++..+.++.... .. ..
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~r-GH~VTvi~p~~~~--------~~~--~~~~~~~~~i~~~~~~~~~~~~~~~ 89 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAER-GHNVTVIKPTLRV--------YYA--SHLCGNITEIDASLSVEYFKKLVKS 89 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHc-CCeEEEEeccccc--------ccc--cCCCCCEEEEEcCCChHHHHHHHhh
Confidence 357655 889999999999999999886 9999999875320 000 00012344444321100 00 00
Q ss_pred CC-c-------chHHH---HHHHHHHhHHH-H-HHHHHHHhc--cCCceEEEeCCCcchHHHHHHHh-CCCcEEEecchH
Q 011381 87 DD-F-------QIETR---ITLTLVRSLSS-L-RDALKVLAE--STRLVALVVDPFGSAAFDVANEV-GVPAYVFFTTTA 150 (487)
Q Consensus 87 ~~-~-------~~~~~---~~~~~~~~~~~-l-~~~l~~~~~--~~~~D~VI~D~~~~~~~~~A~~l-gIP~v~~~~~~~ 150 (487)
.. + ..... ....+...++. + ...+.++++ +.+||+||+|.+..|+..+|+.+ ++|.|.+++...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 90 SAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 00 0 00000 00000111111 1 122233333 56899999999999999999999 999877766433
Q ss_pred HHHHHHhcccccccccccccCCCCCcccCCCCcccCCCCCCCc--ccccchhHHHHHHH---------HHHhh-hcccEE
Q 011381 151 MALSFLFHLPELDVKFSCEYRDMPEPVQLPGCVPVHGRDFADG--FQQRKNEAYRFLLS---------FSKQY-LLAAGI 218 (487)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~--~~~r~~~~~~~~~~---------~~~~~-~~~~~~ 218 (487)
...... ... ..|.+ |++.|.....+.+. +++|..+.+..... ....+ .+..+.
T Consensus 170 ~~~~~~----~~g----------g~p~~-~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~ 234 (507)
T PHA03392 170 LAENFE----TMG----------AVSRH-PVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGP 234 (507)
T ss_pred chhHHH----hhc----------cCCCC-CeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCC
Confidence 321100 000 00111 34444444444433 47776665322110 00001 111000
Q ss_pred EecccccccchHHHHhhcccCCCC-----CCCeEeeCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCc---
Q 011381 219 MVNSFMELETGPFKALMEGESSFK-----PPPVYPVGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGG--- 290 (487)
Q Consensus 219 l~~s~~~le~~~~~~~~~~~~~~~-----~p~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~--- 290 (487)
-.+++.++.......+.|+++.++ +|++++|||++.......+. ++++.+|+++.+ +++|||||||+.
T Consensus 235 ~~~~~~~l~~~~~l~lvns~~~~d~~rp~~p~v~~vGgi~~~~~~~~~l---~~~l~~fl~~~~-~g~V~vS~GS~~~~~ 310 (507)
T PHA03392 235 DTPTIRELRNRVQLLFVNVHPVFDNNRPVPPSVQYLGGLHLHKKPPQPL---DDYLEEFLNNST-NGVVYVSFGSSIDTN 310 (507)
T ss_pred CCCCHHHHHhCCcEEEEecCccccCCCCCCCCeeeecccccCCCCCCCC---CHHHHHHHhcCC-CcEEEEECCCCCcCC
Confidence 012233333333333333333222 36899999998743222233 788999999865 579999999974
Q ss_pred CCCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcc
Q 011381 291 TLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGST 370 (487)
Q Consensus 291 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~ 370 (487)
.++.+.++.+++++++.+++|||+++.... . ..+|+ |+++.+|+||.+||+|+.+
T Consensus 311 ~~~~~~~~~~l~a~~~l~~~viw~~~~~~~---------------~-~~~p~---------Nv~i~~w~Pq~~lL~hp~v 365 (507)
T PHA03392 311 DMDNEFLQMLLRTFKKLPYNVLWKYDGEVE---------------A-INLPA---------NVLTQKWFPQRAVLKHKNV 365 (507)
T ss_pred CCCHHHHHHHHHHHHhCCCeEEEEECCCcC---------------c-ccCCC---------ceEEecCCCHHHHhcCCCC
Confidence 357889999999999999999999885322 0 13444 8999999999999999999
Q ss_pred cccccccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHH
Q 011381 371 GGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKK 450 (487)
Q Consensus 371 ~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~ 450 (487)
++||||||+||++||+++|||||++|+++||+.||+|+++ +|+|+.++..+ +++++|.++|+++|+| ++|++|
T Consensus 366 ~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~-~G~G~~l~~~~---~t~~~l~~ai~~vl~~---~~y~~~ 438 (507)
T PHA03392 366 KAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVE-LGIGRALDTVT---VSAAQLVLAIVDVIEN---PKYRKN 438 (507)
T ss_pred CEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHH-cCcEEEeccCC---cCHHHHHHHHHHHhCC---HHHHHH
Confidence 9999999999999999999999999999999999999999 99999999887 9999999999999999 999999
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHH
Q 011381 451 MRALKDAAANALSPDGSSTKSLAQL 475 (487)
Q Consensus 451 a~~l~~~~~~~~~~~g~~~~~~~~~ 475 (487)
|+++++.+++. +..+.++++.-+
T Consensus 439 a~~ls~~~~~~--p~~~~~~av~~i 461 (507)
T PHA03392 439 LKELRHLIRHQ--PMTPLHKAIWYT 461 (507)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHH
Confidence 99999999962 234555555444
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.2e-47 Score=399.07 Aligned_cols=383 Identities=23% Similarity=0.369 Sum_probs=224.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCC-CCCCCCc-c
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSF-DDLPDDF-Q 90 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~ 90 (487)
+|+++| ++.||+.++..|+++|++| ||+||++++... ..+.......+++..++.... .+..... +
T Consensus 2 kvLv~p-~~~SH~~~~~~l~~~L~~r-GH~VTvl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (500)
T PF00201_consen 2 KVLVFP-MAYSHFIFMRPLAEELAER-GHNVTVLTPSPS----------SSLNPSKPSNIRFETYPDPYPEEEFEEIFPE 69 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH--TTSEEEHHHHH----------HT------S-CCEEEE-----TT------TT
T ss_pred EEEEeC-CCcCHHHHHHHHHHHHHhc-CCceEEEEeecc----------cccccccccceeeEEEcCCcchHHHhhhhHH
Confidence 588888 4889999999999999987 999999987531 111111122345544432211 1111111 1
Q ss_pred hHH----------HHHHHHHH---hHHHHHHHH---------HHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecc
Q 011381 91 IET----------RITLTLVR---SLSSLRDAL---------KVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTT 148 (487)
Q Consensus 91 ~~~----------~~~~~~~~---~~~~l~~~l---------~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~ 148 (487)
... .+...+.. ......... .+.+++.++|++|+|.+..|+..+|+.+|||.+.+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~ 149 (500)
T PF00201_consen 70 FISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSS 149 (500)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHC
T ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecc
Confidence 000 01111000 000000000 01112348999999999999999999999998653322
Q ss_pred hHHHHHHHhcccccccccccccCCCCCcccCCCCcccCCCCCCCc--ccccchhHHHHHHH-HH-Hhhhcc----cEEEe
Q 011381 149 TAMALSFLFHLPELDVKFSCEYRDMPEPVQLPGCVPVHGRDFADG--FQQRKNEAYRFLLS-FS-KQYLLA----AGIMV 220 (487)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~--~~~r~~~~~~~~~~-~~-~~~~~~----~~~l~ 220 (487)
.+ ....... .. ..+. .|++.|.....+.+. +++|..+.+..+.. .. ...... ..-..
T Consensus 150 ~~--------~~~~~~~----~~--g~p~-~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 214 (500)
T PF00201_consen 150 TP--------MYDLSSF----SG--GVPS-PPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYF 214 (500)
T ss_dssp CS--------CSCCTCC----TS--CCCT-STTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEES
T ss_pred cc--------cchhhhh----cc--CCCC-ChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhc
Confidence 10 0111000 00 1111 145555555555444 36776554433221 11 111111 01111
Q ss_pred ---cccccccchHHHHhhcccCCCCC-----CCeEeeCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcC-
Q 011381 221 ---NSFMELETGPFKALMEGESSFKP-----PPVYPVGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGT- 291 (487)
Q Consensus 221 ---~s~~~le~~~~~~~~~~~~~~~~-----p~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~- 291 (487)
.+..++.......+.|.++.++. |+++++|+++.....+. +.++..|++...++++|||||||...
T Consensus 215 ~~~~~~~~~~~~~~l~l~ns~~~ld~prp~~p~v~~vGgl~~~~~~~l-----~~~~~~~~~~~~~~~vv~vsfGs~~~~ 289 (500)
T PF00201_consen 215 GFPFSFRELLSNASLVLINSHPSLDFPRPLLPNVVEVGGLHIKPAKPL-----PEELWNFLDSSGKKGVVYVSFGSIVSS 289 (500)
T ss_dssp S-GGGCHHHHHHHHHCCSSTEEE----HHHHCTSTTGCGC-S----TC-----HHHHHHHTSTTTTTEEEEEE-TSSSTT
T ss_pred ccccccHHHHHHHHHHhhhccccCcCCcchhhcccccCcccccccccc-----ccccchhhhccCCCCEEEEecCcccch
Confidence 11222222233344454444442 58999999987654432 78899999985557899999999854
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCccc
Q 011381 292 LSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTG 371 (487)
Q Consensus 292 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~ 371 (487)
++.+..+++++++++++++|||++..... ..+|+ |+++++|+||.+||+|++++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~iW~~~~~~~-----------------~~l~~---------n~~~~~W~PQ~~lL~hp~v~ 343 (500)
T PF00201_consen 290 MPEEKLKEIAEAFENLPQRFIWKYEGEPP-----------------ENLPK---------NVLIVKWLPQNDLLAHPRVK 343 (500)
T ss_dssp -HHHHHHHHHHHHHCSTTEEEEEETCSHG-----------------CHHHT---------TEEEESS--HHHHHTSTTEE
T ss_pred hHHHHHHHHHHHHhhCCCccccccccccc-----------------ccccc---------eEEEeccccchhhhhcccce
Confidence 44555889999999999999999987322 23443 89999999999999999999
Q ss_pred ccccccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHH
Q 011381 372 GFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKM 451 (487)
Q Consensus 372 ~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a 451 (487)
+||||||+||++||+++|||||++|+++||+.||+++++ .|+|+.++..+ +|.++|.++|+++|+| ++|++||
T Consensus 344 ~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~-~G~g~~l~~~~---~~~~~l~~ai~~vl~~---~~y~~~a 416 (500)
T PF00201_consen 344 LFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEE-KGVGVVLDKND---LTEEELRAAIREVLEN---PSYKENA 416 (500)
T ss_dssp EEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHH-TTSEEEEGGGC----SHHHHHHHHHHHHHS---HHHHHHH
T ss_pred eeeeccccchhhhhhhccCCccCCCCcccCCccceEEEE-EeeEEEEEecC---CcHHHHHHHHHHHHhh---hHHHHHH
Confidence 999999999999999999999999999999999999999 99999999988 9999999999999999 9999999
Q ss_pred HHHHHHHHH
Q 011381 452 RALKDAAAN 460 (487)
Q Consensus 452 ~~l~~~~~~ 460 (487)
+++++.++.
T Consensus 417 ~~ls~~~~~ 425 (500)
T PF00201_consen 417 KRLSSLFRD 425 (500)
T ss_dssp HHHHHTTT-
T ss_pred HHHHHHHhc
Confidence 999999985
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=7e-42 Score=344.88 Aligned_cols=373 Identities=18% Similarity=0.218 Sum_probs=241.8
Q ss_pred cCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCC-CCCCC-c-chHHH
Q 011381 18 PTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFD-DLPDD-F-QIETR 94 (487)
Q Consensus 18 ~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~-~~~~~ 94 (487)
.+|++||++|++.||++|+++ ||+|+|++++.+ +...+. .|+.|..++..... +.... . .....
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~-Gh~V~~~~~~~~----------~~~v~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVAR-GHRVTYATTEEF----------AERVEA--AGAEFVLYGSALPPPDNPPENTEEEPID 68 (392)
T ss_pred CCCccccccccHHHHHHHHhC-CCeEEEEeCHHH----------HHHHHH--cCCEEEecCCcCccccccccccCcchHH
Confidence 579999999999999999765 999999999844 333443 25888877643211 11110 0 11111
Q ss_pred HHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhcccccccccccccCCCC
Q 011381 95 ITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPELDVKFSCEYRDMP 174 (487)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (487)
+...+......+...+.+++++++||+||+|.+++++..+|+++|||+|.+.+.+... ..++....
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~~~---------- 134 (392)
T TIGR01426 69 IIEKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEMVS---------- 134 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----cccccccc----------
Confidence 2222222222222334444566799999999998899999999999999875432110 00110000
Q ss_pred CcccCCCCcccCCCCCCCcccccchhHHHHHHHHHHhhh------------cccEEEecccccccchHHHHhhcccCCCC
Q 011381 175 EPVQLPGCVPVHGRDFADGFQQRKNEAYRFLLSFSKQYL------------LAAGIMVNSFMELETGPFKALMEGESSFK 242 (487)
Q Consensus 175 ~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~------------~~~~~l~~s~~~le~~~~~~~~~~~~~~~ 242 (487)
+.. +.+.. ........+.. ....+.+...... .....+..+.. .+......++
T Consensus 135 -~~~-~~~~~--~~~~~~~~~~~---~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~--------~l~~~~~~~~ 199 (392)
T TIGR01426 135 -PAG-EGSAE--EGAIAERGLAE---YVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPK--------AFQPAGETFD 199 (392)
T ss_pred -ccc-hhhhh--hhccccchhHH---HHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCCh--------HhCCCccccC
Confidence 000 00000 00000000011 1111111111110 00001111111 1211112223
Q ss_pred CCCeEeeCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCCccc
Q 011381 243 PPPVYPVGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEA 322 (487)
Q Consensus 243 ~p~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 322 (487)
++++++||+..... +...|....+++++|||||||+.......+..+++++++.+.+++|..+....
T Consensus 200 -~~~~~~Gp~~~~~~----------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~-- 266 (392)
T TIGR01426 200 -DSFTFVGPCIGDRK----------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD-- 266 (392)
T ss_pred -CCeEEECCCCCCcc----------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC--
Confidence 47999999875432 12236665566889999999986666678889999999999999998876422
Q ss_pred cccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCceecccccccch
Q 011381 323 ANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQK 402 (487)
Q Consensus 323 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~ 402 (487)
.+....++ .|+.+.+|+||.++|++++ ++|||||+||++||+++|+|+|++|...||+
T Consensus 267 -----------~~~~~~~~---------~~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~ 324 (392)
T TIGR01426 267 -----------PADLGELP---------PNVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQGADQP 324 (392)
T ss_pred -----------hhHhccCC---------CCeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEecCCcccHH
Confidence 01112233 3789999999999999999 9999999999999999999999999999999
Q ss_pred hhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 011381 403 MNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARI 478 (487)
Q Consensus 403 ~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 478 (487)
.||+++++ +|+|+.+...+ +++++|.++|+++|.| ++|+++++++++.+.+ .++..++.+.+.+.
T Consensus 325 ~~a~~l~~-~g~g~~l~~~~---~~~~~l~~ai~~~l~~---~~~~~~~~~l~~~~~~----~~~~~~aa~~i~~~ 389 (392)
T TIGR01426 325 MTARRIAE-LGLGRHLPPEE---VTAEKLREAVLAVLSD---PRYAERLRKMRAEIRE----AGGARRAADEIEGF 389 (392)
T ss_pred HHHHHHHH-CCCEEEecccc---CCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHh
Confidence 99999999 99999998776 8999999999999999 8999999999999996 44555555555443
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=6.5e-42 Score=346.54 Aligned_cols=368 Identities=18% Similarity=0.156 Sum_probs=233.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCC--CCCC--
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFD--DLPD-- 87 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-- 87 (487)
|||+|+++|++||++|++.||++|+++ ||+|+|++++.. +...+ ..|+.|..++..... ....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~r-Gh~V~~~t~~~~----------~~~v~--~~G~~~~~~~~~~~~~~~~~~~~ 67 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAA-GHEVRVATPPEF----------ADLVE--AAGLEFVPVGGDPDELLASPERN 67 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHC-CCeEEEeeCHhH----------HHHHH--HcCCceeeCCCCHHHHHhhhhhc
Confidence 699999999999999999999999765 999999998844 23333 236788877642100 0000
Q ss_pred ------CcchHHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhcccc
Q 011381 88 ------DFQIETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPE 161 (487)
Q Consensus 88 ------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~ 161 (487)
.......+...+....+.+.+.+.+.+++++||+||+|.+++++..+|+++|||++.+++++....+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~----- 142 (401)
T cd03784 68 AGLLLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF----- 142 (401)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC-----
Confidence 001111111222223333333334444567999999999888888999999999999887643220000
Q ss_pred cccccccccCCCCCcccCCCCcccCCCCCCCcccccc--hhHHHHHHHHHHhhhcccEEEecc-----cccccchHHHHh
Q 011381 162 LDVKFSCEYRDMPEPVQLPGCVPVHGRDFADGFQQRK--NEAYRFLLSFSKQYLLAAGIMVNS-----FMELETGPFKAL 234 (487)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~--~~~~~~~~~~~~~~~~~~~~l~~s-----~~~le~~~~~~~ 234 (487)
+ | +... .....+... ..............+...++-..+ -......+...+
T Consensus 143 --------------~---~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~ 200 (401)
T cd03784 143 --------------P---P---PLGR--ANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAV 200 (401)
T ss_pred --------------C---C---ccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCccc
Confidence 0 0 0000 000000000 000000111111111111110000 000000011111
Q ss_pred hcccCCCCCCCeEeeC-cCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCC-HHHHHHHHHHHHHcCCceE
Q 011381 235 MEGESSFKPPPVYPVG-PLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLS-QEQLNELALGLEMSGQRFL 312 (487)
Q Consensus 235 ~~~~~~~~~p~~~~vG-pl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i 312 (487)
....+.++ ++..++| ++..... .... +.++..|++. .+++|||+|||+.... ...+..++++++..+.++|
T Consensus 201 ~~~~~~~~-~~~~~~g~~~~~~~~-~~~~---~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i 273 (401)
T cd03784 201 LPPPPDWP-RFDLVTGYGFRDVPY-NGPP---PPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAI 273 (401)
T ss_pred CCCCCCcc-ccCcEeCCCCCCCCC-CCCC---CHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEE
Confidence 11112222 2455664 3332221 1111 5677788876 4679999999986544 5677889999999999999
Q ss_pred EEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCce
Q 011381 313 WVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPI 392 (487)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~ 392 (487)
|+++.... ....+| .|+++.+|+||.++|++++ +||||||+||++||+++|||+
T Consensus 274 ~~~g~~~~---------------~~~~~~---------~~v~~~~~~p~~~ll~~~d--~~I~hgG~~t~~eal~~GvP~ 327 (401)
T cd03784 274 LSLGWGGL---------------GAEDLP---------DNVRVVDFVPHDWLLPRCA--AVVHHGGAGTTAAALRAGVPQ 327 (401)
T ss_pred EEccCccc---------------cccCCC---------CceEEeCCCCHHHHhhhhh--eeeecCCchhHHHHHHcCCCE
Confidence 99887543 001233 3899999999999999999 999999999999999999999
Q ss_pred ecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH
Q 011381 393 IAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAAN 460 (487)
Q Consensus 393 v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~ 460 (487)
|++|+..||+.||+++++ +|+|+.+...+ +++++|.++++++|++ .++++++++.+.+++
T Consensus 328 v~~P~~~dQ~~~a~~~~~-~G~g~~l~~~~---~~~~~l~~al~~~l~~----~~~~~~~~~~~~~~~ 387 (401)
T cd03784 328 LVVPFFGDQPFWAARVAE-LGAGPALDPRE---LTAERLAAALRRLLDP----PSRRRAAALLRRIRE 387 (401)
T ss_pred EeeCCCCCcHHHHHHHHH-CCCCCCCCccc---CCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHh
Confidence 999999999999999999 99999998876 8999999999999986 466777778777764
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.6e-39 Score=338.12 Aligned_cols=392 Identities=30% Similarity=0.451 Sum_probs=246.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEe---CCCCC-CCCCC
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIF---LPPVS-FDDLP 86 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~ 86 (487)
+.+++++++|++||++|++.||++|+++ ||+||++++.......... .. ...+.... .+... .+.++
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~-gh~vt~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~ 75 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAER-GHNVTVVTPSFNALKLSKS------SK--SKSIKKINPPPFEFLTIPDGLP 75 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHc-CCceEEEEeechhcccCCc------cc--ceeeeeeecChHHhhhhhhhhc
Confidence 4588899999999999999999999886 9999999987652111100 00 00001011 11000 01222
Q ss_pred CCcchH-----HHHHHHHHHhHHHHHHHHHHHhc--cCCceEEEeCCCcchHHHHHHHhC-CCcEEEecchHHHHHHHhc
Q 011381 87 DDFQIE-----TRITLTLVRSLSSLRDALKVLAE--STRLVALVVDPFGSAAFDVANEVG-VPAYVFFTTTAMALSFLFH 158 (487)
Q Consensus 87 ~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~--~~~~D~VI~D~~~~~~~~~A~~lg-IP~v~~~~~~~~~~~~~~~ 158 (487)
..++.. .........+...+.+.+..+.. ..++|++|+|.+..|...+|.... |+..++++..........+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~ 155 (496)
T KOG1192|consen 76 EGWEDDDLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLP 155 (496)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCc
Confidence 222211 01112222233334443333322 224999999998667776776664 8877777766665443322
Q ss_pred ccccccccccccCCCCCcccCCCCcccCCCCCCCcccccchhHHHHH-HH-------------HHH----hh----hccc
Q 011381 159 LPELDVKFSCEYRDMPEPVQLPGCVPVHGRDFADGFQQRKNEAYRFL-LS-------------FSK----QY----LLAA 216 (487)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~-~~-------------~~~----~~----~~~~ 216 (487)
.+.. ..|........ -...+++|..+..... .. ... .. ....
T Consensus 156 ~~~~---------------~~p~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (496)
T KOG1192|consen 156 SPLS---------------YVPSPFSLSSG-DDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTAS 219 (496)
T ss_pred Cccc---------------ccCcccCcccc-ccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHH
Confidence 2211 01111000000 0111222322111110 00 000 00 1111
Q ss_pred EEEecc-cccccchHHHHhhcccCCCCCCCeEeeCcCcCCCCCCCCCCCCccchhhcccCCCCC--eEEEEEeCCCc---
Q 011381 217 GIMVNS-FMELETGPFKALMEGESSFKPPPVYPVGPLIQTGSNNETNNDRSLECLKWLDEQPSE--SVLFVCFGSGG--- 290 (487)
Q Consensus 217 ~~l~~s-~~~le~~~~~~~~~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~v~vs~Gs~~--- 290 (487)
.++.++ +..++......+.+.. ..|++++|||++....... .....+|++..+.. ++|||||||+.
T Consensus 220 ~i~~~~~~~~ln~~~~~~~~~~~---~~~~v~~IG~l~~~~~~~~-----~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~ 291 (496)
T KOG1192|consen 220 GIIVNASFIFLNSNPLLDFEPRP---LLPKVIPIGPLHVKDSKQK-----SPLPLEWLDILDESRHSVVYISFGSMVNSA 291 (496)
T ss_pred HhhhcCeEEEEccCcccCCCCCC---CCCCceEECcEEecCcccc-----ccccHHHHHHHhhccCCeEEEECCcccccc
Confidence 333443 5555555443321210 1368999999988733221 11345666654444 79999999997
Q ss_pred CCCHHHHHHHHHHHHHc-CCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccc-cccC
Q 011381 291 TLSQEQLNELALGLEMS-GQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQV-LSHG 368 (487)
Q Consensus 291 ~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~i-L~~~ 368 (487)
.++.++..+++.+++++ ++.|+|++..... ..+++++.++ ...||+..+|+||.++ |+|+
T Consensus 292 ~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~-----------------~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~ 353 (496)
T KOG1192|consen 292 DLPEEQKKELAKALESLQGVTFLWKYRPDDS-----------------IYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHP 353 (496)
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEEecCCcc-----------------hhhhhcCCCC-CcCceEEecCCCcHHHhcCCC
Confidence 79999999999999999 8889999997543 0123333222 3457888899999998 6999
Q ss_pred cccccccccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHH
Q 011381 369 STGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLR 448 (487)
Q Consensus 369 ~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~ 448 (487)
++++||||||+||++|++++|||||++|+++||+.||+++++ .|.|..+.+.+ ++.+.+..++.+++++ ++|+
T Consensus 354 ~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~-~g~~~v~~~~~---~~~~~~~~~~~~il~~---~~y~ 426 (496)
T KOG1192|consen 354 AVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVR-HGGGGVLDKRD---LVSEELLEAIKEILEN---EEYK 426 (496)
T ss_pred cCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHh-CCCEEEEehhh---cCcHHHHHHHHHHHcC---hHHH
Confidence 999999999999999999999999999999999999999999 88888888776 6666699999999999 9999
Q ss_pred HHHHHHHHHHHH
Q 011381 449 KKMRALKDAAAN 460 (487)
Q Consensus 449 ~~a~~l~~~~~~ 460 (487)
++++++++.+++
T Consensus 427 ~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 427 EAAKRLSEILRD 438 (496)
T ss_pred HHHHHHHHHHHc
Confidence 999999999885
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=5e-39 Score=320.69 Aligned_cols=388 Identities=18% Similarity=0.210 Sum_probs=235.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCC-CCCCCc
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFD-DLPDDF 89 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 89 (487)
+|||+++..|+.||++|.++||++|.++ ||+|+|++++. +.+..+..+ +.|..++..... ....+.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~-gheV~~~~~~~----------~~~~ve~ag--~~f~~~~~~~~~~~~~~~~ 67 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRR-GHEVVFASTGK----------FKEFVEAAG--LAFVAYPIRDSELATEDGK 67 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhc-CCeEEEEeCHH----------HHHHHHHhC--cceeeccccCChhhhhhhh
Confidence 4799999999999999999999999665 99999999884 444455433 556665542110 001011
Q ss_pred c-hHHHHH---HHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHh-ccccccc
Q 011381 90 Q-IETRIT---LTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLF-HLPELDV 164 (487)
Q Consensus 90 ~-~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~-~~~~~~~ 164 (487)
. ..+.+. ..+......+.+. +.+..+|+++.|.....+ .+++..++|++.......+...... +.+....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~----~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (406)
T COG1819 68 FAGVKSFRRLLQQFKKLIRELLEL----LRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGI 142 (406)
T ss_pred hhccchhHHHhhhhhhhhHHHHHH----HHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcccccc
Confidence 0 011111 1111111222222 334599999998866555 7888899998865544322111110 1111000
Q ss_pred ccccccCCCCCcccCCCCcccCCCCCCCcccccchhHHHHHH-HHHHhhhcc---cEEEecccccccchHHHHhhcccCC
Q 011381 165 KFSCEYRDMPEPVQLPGCVPVHGRDFADGFQQRKNEAYRFLL-SFSKQYLLA---AGIMVNSFMELETGPFKALMEGESS 240 (487)
Q Consensus 165 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~-~~~~~~~~~---~~~l~~s~~~le~~~~~~~~~~~~~ 240 (487)
. .....+.. +............+. ...... +....+... ...+..+-..+...+.+........
T Consensus 143 ~---------~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (406)
T COG1819 143 A---------GKLPIPLY-PLPPRLVRPLIFARS--WLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDR 210 (406)
T ss_pred c---------cccccccc-ccChhhccccccchh--hhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCC
Confidence 0 00000000 000000000000000 000000 000000000 0000011111111111100000000
Q ss_pred CCCCCeEeeCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCCc
Q 011381 241 FKPPPVYPVGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHE 320 (487)
Q Consensus 241 ~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 320 (487)
++ -...++||+.... ..+...|.. .++++||+||||.... .+.++.++++++.++.++|...+. ..
T Consensus 211 ~p-~~~~~~~~~~~~~---------~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~~ 276 (406)
T COG1819 211 LP-FIGPYIGPLLGEA---------ANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-AR 276 (406)
T ss_pred CC-CCcCccccccccc---------cccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-cc
Confidence 01 1334455554332 233344433 3477999999998766 888999999999999999998876 22
Q ss_pred cccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccCchhHHHHHhhCCceeccccccc
Q 011381 321 EAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSE 400 (487)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~D 400 (487)
....++|+ |+++.+|+||.++|++++ +||||||+||++|||++|||+|++|...|
T Consensus 277 --------------~~~~~~p~---------n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~vv~P~~~D 331 (406)
T COG1819 277 --------------DTLVNVPD---------NVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLVVIPDGAD 331 (406)
T ss_pred --------------cccccCCC---------ceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEEEecCCcc
Confidence 12345666 899999999999999999 99999999999999999999999999999
Q ss_pred chhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 011381 401 QKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIW 479 (487)
Q Consensus 401 Q~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 479 (487)
|+.||.|+++ +|+|+.+..++ ++++.++++|+++|++ ++|+++++++++.+++ ++| ...+.+++++.
T Consensus 332 Q~~nA~rve~-~G~G~~l~~~~---l~~~~l~~av~~vL~~---~~~~~~~~~~~~~~~~---~~g--~~~~a~~le~~ 398 (406)
T COG1819 332 QPLNAERVEE-LGAGIALPFEE---LTEERLRAAVNEVLAD---DSYRRAAERLAEEFKE---EDG--PAKAADLLEEF 398 (406)
T ss_pred hhHHHHHHHH-cCCceecCccc---CCHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhh---ccc--HHHHHHHHHHH
Confidence 9999999999 99999999987 9999999999999999 9999999999999997 455 44444555443
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.93 E-value=6.3e-24 Score=209.46 Aligned_cols=321 Identities=14% Similarity=0.136 Sum_probs=194.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCC--Ccc
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPD--DFQ 90 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 90 (487)
+|++..-++-||++|.++||++|.+ +||+|+|++.... ...++... .++.+..++.. .+.. .+.
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~-~g~~v~~vg~~~~--------~e~~l~~~--~g~~~~~~~~~---~l~~~~~~~ 68 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKE-DNWDISYIGSHQG--------IEKTIIEK--ENIPYYSISSG---KLRRYFDLK 68 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHh-CCCEEEEEECCCc--------cccccCcc--cCCcEEEEecc---CcCCCchHH
Confidence 7999999999999999999999976 4999999997644 12222222 24677666532 2221 111
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcch--HHHHHHHhCCCcEEEecchHHHHHHHhccccccccccc
Q 011381 91 IETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSA--AFDVANEVGVPAYVFFTTTAMALSFLFHLPELDVKFSC 168 (487)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~--~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (487)
......... ...-.....+ ++.+||+||+...+.. +..+|..+++|+++.-...
T Consensus 69 ~~~~~~~~~-~~~~~~~~i~----~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~------------------- 124 (352)
T PRK12446 69 NIKDPFLVM-KGVMDAYVRI----RKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM------------------- 124 (352)
T ss_pred HHHHHHHHH-HHHHHHHHHH----HhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC-------------------
Confidence 111111111 1111222233 4559999998775554 3468888999977532110
Q ss_pred ccCCCCCcccCCCCcccCCCCCCCcccccchhHHHHHHHHHHhhhcccEEEecccccccchHHHHhhcccCCCCCCCeEe
Q 011381 169 EYRDMPEPVQLPGCVPVHGRDFADGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEGESSFKPPPVYP 248 (487)
Q Consensus 169 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~p~~~~ 248 (487)
.|++. + +.+ .+..+. +..+|++.. .. ++...+++
T Consensus 125 ----------~~g~~---------------n---r~~------~~~a~~-v~~~f~~~~----~~-------~~~~k~~~ 158 (352)
T PRK12446 125 ----------TPGLA---------------N---KIA------LRFASK-IFVTFEEAA----KH-------LPKEKVIY 158 (352)
T ss_pred ----------CccHH---------------H---HHH------HHhhCE-EEEEccchh----hh-------CCCCCeEE
Confidence 12210 0 000 011111 122332211 01 12236889
Q ss_pred eCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCH-HHHHHHHHHHHHcCCceEEEEeCCCcccccccc
Q 011381 249 VGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQ-EQLNELALGLEMSGQRFLWVAKSPHEEAANATY 327 (487)
Q Consensus 249 vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~ 327 (487)
+|+.+........ .....+.+.-.+++++|+|..||...... +.+.+++..+. .+.+++|.++.+..
T Consensus 159 tG~Pvr~~~~~~~----~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~~------- 226 (352)
T PRK12446 159 TGSPVREEVLKGN----REKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGNL------- 226 (352)
T ss_pred ECCcCCccccccc----chHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCchH-------
Confidence 9987655432110 11222222223456799999999754222 22333333332 24788998887532
Q ss_pred ccccCCCCCCCCCchhHHHhhcCCCceeccCC-C-cccccccCcccccccccCchhHHHHHhhCCceeccccc-----cc
Q 011381 328 FSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWA-P-QAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLY-----SE 400 (487)
Q Consensus 328 ~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~-p-q~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~-----~D 400 (487)
+....+. .++.+..|+ + ..++++++| ++|||||.+|++|++++|+|+|++|+. .|
T Consensus 227 --------------~~~~~~~--~~~~~~~f~~~~m~~~~~~ad--lvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~ 288 (352)
T PRK12446 227 --------------DDSLQNK--EGYRQFEYVHGELPDILAITD--FVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGD 288 (352)
T ss_pred --------------HHHHhhc--CCcEEecchhhhHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEEcCCCCCCCch
Confidence 1101011 245566777 4 467999999 999999999999999999999999985 48
Q ss_pred chhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHH
Q 011381 401 QKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRA 453 (487)
Q Consensus 401 Q~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~ 453 (487)
|..||+.+++ .|+|..+...+ ++++.|.+++.++++|. +.|++++++
T Consensus 289 Q~~Na~~l~~-~g~~~~l~~~~---~~~~~l~~~l~~ll~~~--~~~~~~~~~ 335 (352)
T PRK12446 289 QILNAESFER-QGYASVLYEED---VTVNSLIKHVEELSHNN--EKYKTALKK 335 (352)
T ss_pred HHHHHHHHHH-CCCEEEcchhc---CCHHHHHHHHHHHHcCH--HHHHHHHHH
Confidence 9999999999 99999998777 99999999999999872 245544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.91 E-value=1.2e-22 Score=199.04 Aligned_cols=309 Identities=18% Similarity=0.184 Sum_probs=186.3
Q ss_pred cEEEEEcCC-CccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCcc
Q 011381 12 AYVAMVPTP-GIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDFQ 90 (487)
Q Consensus 12 ~~il~~~~~-~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (487)
|||++...+ +.||+...++||++| + ||+|+|++.... . .+... .+....++...........+
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--r-g~~v~~~~~~~~---------~-~~~~~---~~~~~~~~~~~~~~~~~~~~ 64 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--R-GHEVTFITSGPA---------P-EFLKP---RFPVREIPGLGPIQENGRLD 64 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--c-cCceEEEEcCCc---------H-HHhcc---ccCEEEccCceEeccCCccc
Confidence 678887775 999999999999999 4 999999997743 2 22211 13344443322111111222
Q ss_pred hHHHHHHHHH--HhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHhccccccccccc
Q 011381 91 IETRITLTLV--RSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPELDVKFSC 168 (487)
Q Consensus 91 ~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (487)
....+..... .........+.+++++.+||+||+|. .+.+..+|+..|||++.+....... +
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~-----~---------- 128 (318)
T PF13528_consen 65 RWKTVRNNIRWLARLARRIRREIRWLREFRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFL-----H---------- 128 (318)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcc-----c----------
Confidence 2222221110 01111112223344566999999996 4445678999999998876653221 0
Q ss_pred ccCCCCCcccCCCCcccCCCCCCCcccccchhHHHHHHHHHHhhhcccEEEecccccccchHHHHhhcccCCCCCCCeEe
Q 011381 169 EYRDMPEPVQLPGCVPVHGRDFADGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEGESSFKPPPVYP 248 (487)
Q Consensus 169 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~p~~~~ 248 (487)
+.... .. . +.....+..+.... ....+...+..++. .... ...+..+
T Consensus 129 -----------~~~~~-~~---~----~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~~------------~~~~~~~ 175 (318)
T PF13528_consen 129 -----------PNFWL-PW---D----QDFGRLIERYIDRY-HFPPADRRLALSFY-PPLP------------PFFRVPF 175 (318)
T ss_pred -----------ccCCc-ch---h----hhHHHHHHHhhhhc-cCCcccceecCCcc-cccc------------ccccccc
Confidence 00000 00 0 00011111111110 12222233333332 1100 1124667
Q ss_pred eCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcC-CceEEEEeCCCcccccccc
Q 011381 249 VGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSG-QRFLWVAKSPHEEAANATY 327 (487)
Q Consensus 249 vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~ 327 (487)
+||+........ + . .+++.|+|+||..... .++++++..+ .++++. +....
T Consensus 176 ~~p~~~~~~~~~-----~-------~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~------- 227 (318)
T PF13528_consen 176 VGPIIRPEIREL-----P-------P--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAA------- 227 (318)
T ss_pred cCchhccccccc-----C-------C--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCcc-------
Confidence 888775432211 0 1 1355899999975321 6677777777 455544 54321
Q ss_pred ccccCCCCCCCCCchhHHHhhcCCCceeccCC--CcccccccCcccccccccCchhHHHHHhhCCceecccc--cccchh
Q 011381 328 FSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWA--PQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPL--YSEQKM 403 (487)
Q Consensus 328 ~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~--pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~--~~DQ~~ 403 (487)
+....|+.+..|. ...++|+.|+ ++|+|||.||++|++++|+|+|++|. ..||..
T Consensus 228 -------------------~~~~~ni~~~~~~~~~~~~~m~~ad--~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~ 286 (318)
T PF13528_consen 228 -------------------DPRPGNIHVRPFSTPDFAELMAAAD--LVISKGGYTTISEALALGKPALVIPRPGQDEQEY 286 (318)
T ss_pred -------------------cccCCCEEEeecChHHHHHHHHhCC--EEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHH
Confidence 0113478888876 4577999999 99999999999999999999999999 789999
Q ss_pred hhHhhhcccceeEEEeecCCCccCHHHHHHHHHHh
Q 011381 404 NAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGL 438 (487)
Q Consensus 404 na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~v 438 (487)
||+++++ +|+|..++.++ ++++.|+++|+++
T Consensus 287 ~a~~l~~-~G~~~~~~~~~---~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 287 NARKLEE-LGLGIVLSQED---LTPERLAEFLERL 317 (318)
T ss_pred HHHHHHH-CCCeEEccccc---CCHHHHHHHHhcC
Confidence 9999999 99999998887 9999999999874
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.88 E-value=6.2e-21 Score=186.81 Aligned_cols=123 Identities=19% Similarity=0.200 Sum_probs=91.1
Q ss_pred CeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccC
Q 011381 279 ESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSW 358 (487)
Q Consensus 279 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ 358 (487)
++.|+|.+|+.. ...+++++++.+. +.+++..... ....++ .|+.+.+|
T Consensus 188 ~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~~~---------------~~~~~~---------~~v~~~~~ 236 (321)
T TIGR00661 188 EDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSYEV---------------AKNSYN---------ENVEIRRI 236 (321)
T ss_pred CCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCCCC---------------CccccC---------CCEEEEEC
Confidence 457888888742 2456777777763 2333332211 011222 37888899
Q ss_pred CC--cccccccCcccccccccCchhHHHHHhhCCceecccccc--cchhhhHhhhcccceeEEEeecCCCccCHHHHHHH
Q 011381 359 AP--QAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYS--EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANY 434 (487)
Q Consensus 359 ~p--q~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~a 434 (487)
.| ..+.|+.|+ ++|||||.+|++|++++|+|+|++|... ||..||+.+++ +|+|+.++..+ + ++.++
T Consensus 237 ~~~~~~~~l~~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~~~---~---~~~~~ 307 (321)
T TIGR00661 237 TTDNFKELIKNAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEYKE---L---RLLEA 307 (321)
T ss_pred ChHHHHHHHHhCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcChhh---H---HHHHH
Confidence 97 467788899 9999999999999999999999999965 89999999999 99999998765 4 55667
Q ss_pred HHHhccC
Q 011381 435 AKGLIQG 441 (487)
Q Consensus 435 v~~vl~~ 441 (487)
+.+++++
T Consensus 308 ~~~~~~~ 314 (321)
T TIGR00661 308 ILDIRNM 314 (321)
T ss_pred HHhcccc
Confidence 7777777
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=3.6e-20 Score=180.62 Aligned_cols=314 Identities=18% Similarity=0.233 Sum_probs=190.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCC-EEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCcc
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNF-LVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDFQ 90 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (487)
++|++...++-||+.|.++|+++|.++ |+ +|.+..+... ....+.+.. ++.+..++........ ...
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~-g~~~v~~~~~~~~--------~e~~l~~~~--~~~~~~I~~~~~~~~~-~~~ 68 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKR-GWEQVIVLGTGDG--------LEAFLVKQY--GIEFELIPSGGLRRKG-SLK 68 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhh-CccEEEEeccccc--------ceeeecccc--CceEEEEecccccccC-cHH
Confidence 368888999999999999999999765 99 4766655433 122222222 4666666543221111 111
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHH--HHHHHhCCCcEEEecchHHHHHHHhccccccccccc
Q 011381 91 IETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAF--DVANEVGVPAYVFFTTTAMALSFLFHLPELDVKFSC 168 (487)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~--~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (487)
...... .+..........|+++ +||+||.-.-+.+.+ .+|..+|||.+..-..
T Consensus 69 ~~~~~~-~~~~~~~~a~~il~~~----kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn-------------------- 123 (357)
T COG0707 69 LLKAPF-KLLKGVLQARKILKKL----KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQN-------------------- 123 (357)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHc----CCCEEEecCCccccHHHHHHHhCCCCEEEEecC--------------------
Confidence 111111 1223334444555554 999999866555544 5888899997763111
Q ss_pred ccCCCCCcccCCCCcccCCCCCCCcccccchhHHHHHHHHHHhhhcccEEEecccccccchHHHHhhcccCCCCCCCeEe
Q 011381 169 EYRDMPEPVQLPGCVPVHGRDFADGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEGESSFKPPPVYP 248 (487)
Q Consensus 169 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~p~~~~ 248 (487)
..|+... +.+. ..++. +..+|...+.. +...+++.
T Consensus 124 ---------~~~G~an------------------k~~~------~~a~~-V~~~f~~~~~~-----------~~~~~~~~ 158 (357)
T COG0707 124 ---------AVPGLAN------------------KILS------KFAKK-VASAFPKLEAG-----------VKPENVVV 158 (357)
T ss_pred ---------CCcchhH------------------HHhH------Hhhce-eeecccccccc-----------CCCCceEE
Confidence 0122211 0000 01111 12233221111 01125788
Q ss_pred eCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCC-HHHHHHHHHHHHHcCCceEEEEeCCCcccccccc
Q 011381 249 VGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLS-QEQLNELALGLEMSGQRFLWVAKSPHEEAANATY 327 (487)
Q Consensus 249 vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~ 327 (487)
+|.-....-...+ ...+ .+.... ++++|+|.-||..... .+.+.+++..+.+ ...+++..+.+..
T Consensus 159 tG~Pvr~~~~~~~----~~~~-~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~~------- 224 (357)
T COG0707 159 TGIPVRPEFEELP----AAEV-RKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKNDL------- 224 (357)
T ss_pred ecCcccHHhhccc----hhhh-hhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcchH-------
Confidence 8854433211110 1111 111111 4679999999864221 1222223333333 4677877776532
Q ss_pred ccccCCCCCCCCCchhHHHhhcCCC-ceeccCCCc-ccccccCcccccccccCchhHHHHHhhCCceeccccc----ccc
Q 011381 328 FSVQSMKDPLDFLPKGFLDRTKGVG-LVVPSWAPQ-AQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLY----SEQ 401 (487)
Q Consensus 328 ~~~~~~~~~~~~lp~~~~~~~~~~~-v~~~~~~pq-~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~----~DQ 401 (487)
+.....+...+ +.+..|..+ ..+++.+| ++||+.|++|+.|.+++|+|+|.+|.. .||
T Consensus 225 --------------~~~~~~~~~~~~~~v~~f~~dm~~~~~~AD--LvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q 288 (357)
T COG0707 225 --------------EELKSAYNELGVVRVLPFIDDMAALLAAAD--LVISRAGALTIAELLALGVPAILVPYPPGADGHQ 288 (357)
T ss_pred --------------HHHHHHHhhcCcEEEeeHHhhHHHHHHhcc--EEEeCCcccHHHHHHHhCCCEEEeCCCCCccchH
Confidence 33444444445 778888876 66899999 999999999999999999999999983 389
Q ss_pred hhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccC
Q 011381 402 KMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 402 ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~ 441 (487)
..||..+++ .|.|..+...+ +|++.+.+.|.+++++
T Consensus 289 ~~NA~~l~~-~gaa~~i~~~~---lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 289 EYNAKFLEK-AGAALVIRQSE---LTPEKLAELILRLLSN 324 (357)
T ss_pred HHHHHHHHh-CCCEEEecccc---CCHHHHHHHHHHHhcC
Confidence 999999999 99999999988 9999999999999987
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.82 E-value=9.5e-18 Score=167.18 Aligned_cols=342 Identities=16% Similarity=0.172 Sum_probs=200.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCcch
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDFQI 91 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (487)
|||+++..+..||...++.|+++|.++ ||+|++++.+.. ......+. .++.+..++.. +.... ..
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~-g~ev~vv~~~~~--------~~~~~~~~--~g~~~~~~~~~---~~~~~-~~ 66 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKR-GWEVLYLGTARG--------MEARLVPK--AGIEFHFIPSG---GLRRK-GS 66 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhC-CCEEEEEECCCc--------hhhhcccc--CCCcEEEEecc---CcCCC-Ch
Confidence 789999988889999999999999775 999999987542 01111111 24555555432 11111 11
Q ss_pred HHHHHHHH--HHhHHHHHHHHHHHhccCCceEEEeCCC-cch-HHHHHHHhCCCcEEEecchHHHHHHHhcccccccccc
Q 011381 92 ETRITLTL--VRSLSSLRDALKVLAESTRLVALVVDPF-GSA-AFDVANEVGVPAYVFFTTTAMALSFLFHLPELDVKFS 167 (487)
Q Consensus 92 ~~~~~~~~--~~~~~~l~~~l~~~~~~~~~D~VI~D~~-~~~-~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 167 (487)
...+.... ......+. +++++.+||+|++... ..+ +..++...++|++.....
T Consensus 67 ~~~l~~~~~~~~~~~~~~----~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~------------------- 123 (357)
T PRK00726 67 LANLKAPFKLLKGVLQAR----KILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN------------------- 123 (357)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC-------------------
Confidence 11111111 11222233 3334559999999863 222 335677789997742100
Q ss_pred cccCCCCCcccCCCCcccCCCCCCCcccccchhHHHHHHHHHHhhhcccEEEecccccccchHHHHhhcccCCCCCCCeE
Q 011381 168 CEYRDMPEPVQLPGCVPVHGRDFADGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEGESSFKPPPVY 247 (487)
Q Consensus 168 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~p~~~ 247 (487)
. .++ +.. +.+ ....+.++..+ ++. +.+ .+..++.
T Consensus 124 --------~--~~~---------------~~~---r~~------~~~~d~ii~~~-~~~-------~~~----~~~~~i~ 157 (357)
T PRK00726 124 --------A--VPG---------------LAN---KLL------ARFAKKVATAF-PGA-------FPE----FFKPKAV 157 (357)
T ss_pred --------C--Ccc---------------HHH---HHH------HHHhchheECc-hhh-------hhc----cCCCCEE
Confidence 0 010 000 000 01122222211 110 000 1234788
Q ss_pred eeCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHH-HHHHHHHcCC--ceEEEEeCCCccccc
Q 011381 248 PVGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNE-LALGLEMSGQ--RFLWVAKSPHEEAAN 324 (487)
Q Consensus 248 ~vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~-~~~al~~~~~--~~i~~~~~~~~~~~~ 324 (487)
++|+......... ...-.+ +...++.++|++..|+. ....+.. +.+++.+... .++|.++.+..
T Consensus 158 vi~n~v~~~~~~~-----~~~~~~-~~~~~~~~~i~~~gg~~---~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~---- 224 (357)
T PRK00726 158 VTGNPVREEILAL-----AAPPAR-LAGREGKPTLLVVGGSQ---GARVLNEAVPEALALLPEALQVIHQTGKGDL---- 224 (357)
T ss_pred EECCCCChHhhcc-----cchhhh-ccCCCCCeEEEEECCcH---hHHHHHHHHHHHHHHhhhCcEEEEEcCCCcH----
Confidence 8886654321110 010011 12122344666654542 2333333 3366666543 34555565432
Q ss_pred cccccccCCCCCCCCCchhHHHhhc-CCCceeccCCC-cccccccCcccccccccCchhHHHHHhhCCceecccc----c
Q 011381 325 ATYFSVQSMKDPLDFLPKGFLDRTK-GVGLVVPSWAP-QAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPL----Y 398 (487)
Q Consensus 325 ~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~~~~~~p-q~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~----~ 398 (487)
+.+.+... +-++.+.+|+. ..++++.++ ++|+|+|.++++||+++|+|+|++|. .
T Consensus 225 -----------------~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d--~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~ 285 (357)
T PRK00726 225 -----------------EEVRAAYAAGINAEVVPFIDDMAAAYAAAD--LVICRAGASTVAELAAAGLPAILVPLPHAAD 285 (357)
T ss_pred -----------------HHHHHHhhcCCcEEEeehHhhHHHHHHhCC--EEEECCCHHHHHHHHHhCCCEEEecCCCCCc
Confidence 22222222 12377889984 478999999 99999999999999999999999997 3
Q ss_pred ccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 011381 399 SEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARI 478 (487)
Q Consensus 399 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 478 (487)
.||..|+..+.+ .|.|..++.++ ++++.+.+++.++++| +++++++.+-+.... +.++..+.++.+.+.
T Consensus 286 ~~~~~~~~~i~~-~~~g~~~~~~~---~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 354 (357)
T PRK00726 286 DHQTANARALVD-AGAALLIPQSD---LTPEKLAEKLLELLSD---PERLEAMAEAARALG----KPDAAERLADLIEEL 354 (357)
T ss_pred CcHHHHHHHHHH-CCCEEEEEccc---CCHHHHHHHHHHHHcC---HHHHHHHHHHHHhcC----CcCHHHHHHHHHHHH
Confidence 689999999999 99999998876 7899999999999999 777766666555443 567777777777766
Q ss_pred Hh
Q 011381 479 WK 480 (487)
Q Consensus 479 l~ 480 (487)
++
T Consensus 355 ~~ 356 (357)
T PRK00726 355 AR 356 (357)
T ss_pred hh
Confidence 54
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.76 E-value=4.9e-16 Score=154.38 Aligned_cols=319 Identities=16% Similarity=0.132 Sum_probs=182.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCcchH
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDFQIE 92 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (487)
||++...+..||....+.|+++|.++ ||+|++++.... ....... ..++.+..++.... .. ....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~-G~ev~v~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~---~~-~~~~ 65 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRER-GAEVLFLGTKRG--------LEARLVP--KAGIPLHTIPVGGL---RR-KGSL 65 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhC-CCEEEEEECCCc--------chhhccc--ccCCceEEEEecCc---CC-CChH
Confidence 58899999999999999999999765 999999987532 0111111 12355555443211 11 1111
Q ss_pred HHHHHHH--HHhHHHHHHHHHHHhccCCceEEEeCCC--cchHHHHHHHhCCCcEEEecchHHHHHHHhccccccccccc
Q 011381 93 TRITLTL--VRSLSSLRDALKVLAESTRLVALVVDPF--GSAAFDVANEVGVPAYVFFTTTAMALSFLFHLPELDVKFSC 168 (487)
Q Consensus 93 ~~~~~~~--~~~~~~l~~~l~~~~~~~~~D~VI~D~~--~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (487)
..+.... ......+... +++.+||+|+++.. ...+..+|...++|++.....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~----i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~-------------------- 121 (350)
T cd03785 66 KKLKAPFKLLKGVLQARKI----LKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN-------------------- 121 (350)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC--------------------
Confidence 1121111 1122223333 34559999998653 223446788889997642100
Q ss_pred ccCCCCCcccCCCCcccCCCCCCCcccccchhHHHHHHHHHHhhhcccEEEecccccccchHHHHhhcccCCCCCCCeEe
Q 011381 169 EYRDMPEPVQLPGCVPVHGRDFADGFQQRKNEAYRFLLSFSKQYLLAAGIMVNSFMELETGPFKALMEGESSFKPPPVYP 248 (487)
Q Consensus 169 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~p~~~~ 248 (487)
. .++ . ...+ .....+.++..+-...+. ++..++.+
T Consensus 122 -------~--~~~------------~-------~~~~-----~~~~~~~vi~~s~~~~~~------------~~~~~~~~ 156 (350)
T cd03785 122 -------A--VPG------------L-------ANRL-----LARFADRVALSFPETAKY------------FPKDKAVV 156 (350)
T ss_pred -------C--Ccc------------H-------HHHH-----HHHhhCEEEEcchhhhhc------------CCCCcEEE
Confidence 0 010 0 0000 011234444433221111 02236777
Q ss_pred eCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHc---CCceEEEEeCCCcccccc
Q 011381 249 VGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMS---GQRFLWVAKSPHEEAANA 325 (487)
Q Consensus 249 vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~ 325 (487)
+|+......... ... ...+...+++++|++..|+... ......+.++++.+ +..+++..+....
T Consensus 157 i~n~v~~~~~~~-----~~~-~~~~~~~~~~~~i~~~~g~~~~--~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~----- 223 (350)
T cd03785 157 TGNPVREEILAL-----DRE-RARLGLRPGKPTLLVFGGSQGA--RAINEAVPEALAELLRKRLQVIHQTGKGDL----- 223 (350)
T ss_pred ECCCCchHHhhh-----hhh-HHhcCCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhccCeEEEEEcCCccH-----
Confidence 776543221110 111 2222222334466665565421 11112233444433 3345556655421
Q ss_pred ccccccCCCCCCCCCchhHHHhhc--CCCceeccCC-CcccccccCcccccccccCchhHHHHHhhCCceecccc----c
Q 011381 326 TYFSVQSMKDPLDFLPKGFLDRTK--GVGLVVPSWA-PQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPL----Y 398 (487)
Q Consensus 326 ~~~~~~~~~~~~~~lp~~~~~~~~--~~~v~~~~~~-pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~----~ 398 (487)
+.+.+.+. ..|+.+.+|+ +...+|+.++ ++|+++|.+|+.||+++|+|+|++|. .
T Consensus 224 ----------------~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad--~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~ 285 (350)
T cd03785 224 ----------------EEVKKAYEELGVNYEVFPFIDDMAAAYAAAD--LVISRAGASTVAELAALGLPAILIPLPYAAD 285 (350)
T ss_pred ----------------HHHHHHHhccCCCeEEeehhhhHHHHHHhcC--EEEECCCHhHHHHHHHhCCCEEEeecCCCCC
Confidence 22222222 3588999998 5577999999 99999999999999999999999986 3
Q ss_pred ccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHH
Q 011381 399 SEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRA 453 (487)
Q Consensus 399 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~ 453 (487)
.+|..|+..+.+ .|.|..++..+ .+.+++.+++++++++ ++.++++.+
T Consensus 286 ~~~~~~~~~l~~-~g~g~~v~~~~---~~~~~l~~~i~~ll~~---~~~~~~~~~ 333 (350)
T cd03785 286 DHQTANARALVK-AGAAVLIPQEE---LTPERLAAALLELLSD---PERLKAMAE 333 (350)
T ss_pred CcHHHhHHHHHh-CCCEEEEecCC---CCHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 578999999999 89999998764 6899999999999988 555544433
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.69 E-value=1.8e-14 Score=143.09 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=72.4
Q ss_pred CcccccccCcccccccccCchhHHHHHhhCCceeccccc---ccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHH
Q 011381 360 PQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLY---SEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAK 436 (487)
Q Consensus 360 pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~---~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~ 436 (487)
+...+|+.+| ++|+++|.+|+.||+++|+|+|+.|.. .+|..|+..+++ .|.|..++..+ .+++++.++++
T Consensus 243 ~~~~~l~~ad--~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~~~~~~---~~~~~l~~~i~ 316 (348)
T TIGR01133 243 NMAAAYAAAD--LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLVIRQKE---LLPEKLLEALL 316 (348)
T ss_pred CHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEEEeccc---CCHHHHHHHHH
Confidence 4567899999 999999988999999999999999873 468889999999 89999888765 78999999999
Q ss_pred HhccCchhHHHHHHHHH
Q 011381 437 GLIQGEEGKLLRKKMRA 453 (487)
Q Consensus 437 ~vl~~~~~~~~~~~a~~ 453 (487)
++++| ++.+++..+
T Consensus 317 ~ll~~---~~~~~~~~~ 330 (348)
T TIGR01133 317 KLLLD---PANLEAMAE 330 (348)
T ss_pred HHHcC---HHHHHHHHH
Confidence 99998 666554443
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.66 E-value=1.4e-14 Score=145.14 Aligned_cols=107 Identities=11% Similarity=0.086 Sum_probs=87.3
Q ss_pred cccccccCcccccccccCchhHHHHHhhCCceecc----cccc---------cchhhhHhhhcccceeEEEeecCCCccC
Q 011381 361 QAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAW----PLYS---------EQKMNAVLLTDDLKVSFRVKVNENGLVG 427 (487)
Q Consensus 361 q~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~----P~~~---------DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 427 (487)
...+++.+| ++|+-.|..|+ |++++|+|+|++ |+.. +|..|+..+.. .++...+.-.+ +|
T Consensus 261 ~~~~l~aAD--l~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~-~~~~pel~q~~---~~ 333 (385)
T TIGR00215 261 ARKAMFAAD--AALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILAN-RLLVPELLQEE---CT 333 (385)
T ss_pred HHHHHHhCC--EEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcC-CccchhhcCCC---CC
Confidence 356889999 99999999887 999999999999 8742 38889999999 89998887676 99
Q ss_pred HHHHHHHHHHhccCchhH----HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 011381 428 REDIANYAKGLIQGEEGK----LLRKKMRALKDAAANALSPDGSSTKSLAQLAR 477 (487)
Q Consensus 428 ~~~l~~av~~vl~~~~~~----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 477 (487)
++.|.+.+.++|.| + +++++.++--+.+++.+.++|.+.+..+.+++
T Consensus 334 ~~~l~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 334 PHPLAIALLLLLEN---GLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred HHHHHHHHHHHhcC---CcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 99999999999999 6 66666666666666666678888877766553
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.64 E-value=3.1e-14 Score=143.09 Aligned_cols=164 Identities=16% Similarity=0.226 Sum_probs=110.6
Q ss_pred CCeEEEEEeCCCcCCCHHHHHHHHHHHHHc-CCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhc--CCCce
Q 011381 278 SESVLFVCFGSGGTLSQEQLNELALGLEMS-GQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTK--GVGLV 354 (487)
Q Consensus 278 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~v~ 354 (487)
++++|++.-|+... ...+..+++++.+. +.+++++.+.+.. +-+.+.+..+ ..++.
T Consensus 201 ~~~~il~~~G~~~~--~k~~~~li~~l~~~~~~~~viv~G~~~~-------------------~~~~l~~~~~~~~~~v~ 259 (380)
T PRK13609 201 NKKILLIMAGAHGV--LGNVKELCQSLMSVPDLQVVVVCGKNEA-------------------LKQSLEDLQETNPDALK 259 (380)
T ss_pred CCcEEEEEcCCCCC--CcCHHHHHHHHhhCCCcEEEEEeCCCHH-------------------HHHHHHHHHhcCCCcEE
Confidence 35577776676542 23456677777654 3566665554321 1112221111 24788
Q ss_pred eccCCCc-ccccccCcccccccccCchhHHHHHhhCCceecc-cccccchhhhHhhhcccceeEEEeecCCCccCHHHHH
Q 011381 355 VPSWAPQ-AQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAW-PLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIA 432 (487)
Q Consensus 355 ~~~~~pq-~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~ 432 (487)
+.+|+++ .++++.+| ++|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++ .|+|+.. -+.+++.
T Consensus 260 ~~g~~~~~~~l~~~aD--~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~-------~~~~~l~ 329 (380)
T PRK13609 260 VFGYVENIDELFRVTS--CMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVI-------RDDEEVF 329 (380)
T ss_pred EEechhhHHHHHHhcc--EEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEE-------CCHHHHH
Confidence 9999987 57999999 999999988999999999999985 677778899998888 8998754 2578999
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 011381 433 NYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIW 479 (487)
Q Consensus 433 ~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 479 (487)
+++.++++| ++.+++..+-+..+. ...+.++.++.+++.+
T Consensus 330 ~~i~~ll~~---~~~~~~m~~~~~~~~----~~~s~~~i~~~i~~~~ 369 (380)
T PRK13609 330 AKTEALLQD---DMKLLQMKEAMKSLY----LPEPADHIVDDILAEN 369 (380)
T ss_pred HHHHHHHCC---HHHHHHHHHHHHHhC----CCchHHHHHHHHHHhh
Confidence 999999998 665544443332222 3456666666665544
No 37
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.56 E-value=3.4e-13 Score=135.59 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=70.4
Q ss_pred ccccccCcccccccccCchhHHHHHhhCCceecccccc--------cchhh-----hHhhhcccceeEEEeecCCCccCH
Q 011381 362 AQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYS--------EQKMN-----AVLLTDDLKVSFRVKVNENGLVGR 428 (487)
Q Consensus 362 ~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~--------DQ~~n-----a~~v~~~~G~G~~l~~~~~~~~~~ 428 (487)
..+++.+| ++|+-+|.+++ |++++|+|+|++|... .|..| +..+.+ .+++..+...+ .++
T Consensus 256 ~~~~~~aD--l~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~---~~~ 328 (380)
T PRK00025 256 REAMAAAD--AALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAG-RELVPELLQEE---ATP 328 (380)
T ss_pred HHHHHhCC--EEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcC-CCcchhhcCCC---CCH
Confidence 56788999 99999998877 9999999999985432 22222 222333 33333333344 689
Q ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhc
Q 011381 429 EDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWKN 481 (487)
Q Consensus 429 ~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 481 (487)
+.+.+++.++++| ++.+++..+-.+.+++.+ ..|+..+.++.+.+.+.+
T Consensus 329 ~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~~ 377 (380)
T PRK00025 329 EKLARALLPLLAD---GARRQALLEGFTELHQQL-RCGADERAAQAVLELLKQ 377 (380)
T ss_pred HHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhh
Confidence 9999999999999 555544444333333333 356777777666665443
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.54 E-value=1.8e-13 Score=130.84 Aligned_cols=105 Identities=17% Similarity=0.150 Sum_probs=78.5
Q ss_pred CeEEEEEeCCCcCCCHHHHHHHHHHHHHc--CCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhc-CCCcee
Q 011381 279 ESVLFVCFGSGGTLSQEQLNELALGLEMS--GQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTK-GVGLVV 355 (487)
Q Consensus 279 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~~ 355 (487)
.+.|+|+||..- .......+++++.+. +.++.++++.... ..+.+.+..+ ..|+.+
T Consensus 170 ~~~iLi~~GG~d--~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~-------------------~~~~l~~~~~~~~~i~~ 228 (279)
T TIGR03590 170 LRRVLVSFGGAD--PDNLTLKLLSALAESQINISITLVTGSSNP-------------------NLDELKKFAKEYPNIIL 228 (279)
T ss_pred cCeEEEEeCCcC--CcCHHHHHHHHHhccccCceEEEEECCCCc-------------------CHHHHHHHHHhCCCEEE
Confidence 358999999643 223455677777664 3467777776533 1122322222 347889
Q ss_pred ccCCCc-ccccccCcccccccccCchhHHHHHhhCCceecccccccchhhhHh
Q 011381 356 PSWAPQ-AQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVL 407 (487)
Q Consensus 356 ~~~~pq-~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~ 407 (487)
..++++ ..+|+.++ ++|++|| +|+.|+++.|+|+|++|...+|..||+.
T Consensus 229 ~~~~~~m~~lm~~aD--l~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 229 FIDVENMAELMNEAD--LAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred EeCHHHHHHHHHHCC--EEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999987 58999999 9999999 9999999999999999999999999975
No 39
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.52 E-value=7.3e-16 Score=136.14 Aligned_cols=134 Identities=19% Similarity=0.225 Sum_probs=96.9
Q ss_pred EEEEEeCCCcCC-CHHHHHHHHHHHHHc--CCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcC--CCcee
Q 011381 281 VLFVCFGSGGTL-SQEQLNELALGLEMS--GQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKG--VGLVV 355 (487)
Q Consensus 281 ~v~vs~Gs~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~--~~v~~ 355 (487)
+|+|+.||.... -.+.+..+...+... ..++++.+|.... ......+.. .++.+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~---------------------~~~~~~~~~~~~~v~~ 59 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY---------------------EELKIKVENFNPNVKV 59 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC---------------------HHHCCCHCCTTCCCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH---------------------HHHHHHHhccCCcEEE
Confidence 589999986321 111122233333332 4788888887632 100001111 47899
Q ss_pred ccCCC-cccccccCcccccccccCchhHHHHHhhCCceecccccc----cchhhhHhhhcccceeEEEeecCCCccCHHH
Q 011381 356 PSWAP-QAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYS----EQKMNAVLLTDDLKVSFRVKVNENGLVGRED 430 (487)
Q Consensus 356 ~~~~p-q~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~----DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~ 430 (487)
.+|++ ..+++..+| ++|||||.||++|++++|+|+|++|... +|..||..+++ .|+|..+...+ .+.+.
T Consensus 60 ~~~~~~m~~~m~~aD--lvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~~~---~~~~~ 133 (167)
T PF04101_consen 60 FGFVDNMAELMAAAD--LVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDESE---LNPEE 133 (167)
T ss_dssp ECSSSSHHHHHHHHS--EEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSECCC----SCCC
T ss_pred EechhhHHHHHHHcC--EEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCccc---CCHHH
Confidence 99999 788999999 9999999999999999999999999988 99999999999 99999998876 78999
Q ss_pred HHHHHHHhccC
Q 011381 431 IANYAKGLIQG 441 (487)
Q Consensus 431 l~~av~~vl~~ 441 (487)
|.++|.+++.+
T Consensus 134 L~~~i~~l~~~ 144 (167)
T PF04101_consen 134 LAEAIEELLSD 144 (167)
T ss_dssp HHHHHHCHCCC
T ss_pred HHHHHHHHHcC
Confidence 99999999998
No 40
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.49 E-value=3.2e-12 Score=119.38 Aligned_cols=340 Identities=16% Similarity=0.181 Sum_probs=191.0
Q ss_pred CCCcEEEEEcC--CCccChHHHHHHHHHHHhc-CCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCC
Q 011381 9 IPRAYVAMVPT--PGIGHLIPLVELAKRLVHQ-YNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDL 85 (487)
Q Consensus 9 ~~~~~il~~~~--~~~GH~~p~l~La~~L~~~-~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (487)
.+.+||+|.+. .+-||+...+.||.+|++. .|.+|++++..... + .+ ..+.++.|+.+|.....+.
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~----~--~F-----~~~~gVd~V~LPsl~k~~~ 75 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPA----G--GF-----PGPAGVDFVKLPSLIKGDN 75 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCcc----C--CC-----CCcccCceEecCceEecCC
Confidence 34669999998 5889999999999999763 28999999976541 0 11 1245799999986542111
Q ss_pred C--CCcchHHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHH-HHHHHhCCCcEEEecchHHHHHHHhccccc
Q 011381 86 P--DDFQIETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAF-DVANEVGVPAYVFFTTTAMALSFLFHLPEL 162 (487)
Q Consensus 86 ~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~-~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~ 162 (487)
- ...+.-..+......-...+...++ ..+||++|+|.+-+... .+. |. +......+
T Consensus 76 G~~~~~d~~~~l~e~~~~Rs~lil~t~~----~fkPDi~IVd~~P~Glr~EL~-----pt----------L~yl~~~~-- 134 (400)
T COG4671 76 GEYGLVDLDGDLEETKKLRSQLILSTAE----TFKPDIFIVDKFPFGLRFELL-----PT----------LEYLKTTG-- 134 (400)
T ss_pred CceeeeecCCCHHHHHHHHHHHHHHHHH----hcCCCEEEEeccccchhhhhh-----HH----------HHHHhhcC--
Confidence 0 0000000111111111122333334 44999999998655421 111 10 00000000
Q ss_pred ccccccccCCCCCcccCCCCcccCCCCCCCcccccchhHHHHHHHHHHhhhcccEEEe---cccccccchHHHHhhcccC
Q 011381 163 DVKFSCEYRDMPEPVQLPGCVPVHGRDFADGFQQRKNEAYRFLLSFSKQYLLAAGIMV---NSFMELETGPFKALMEGES 239 (487)
Q Consensus 163 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~---~s~~~le~~~~~~~~~~~~ 239 (487)
..+. -++. ...+.+....+.+ .-...++..+++ .+.+++ +.|.+++..+.....
T Consensus 135 -----------t~~v--L~lr--~i~D~p~~~~~~w--~~~~~~~~I~r~--yD~V~v~GdP~f~d~~~~~~~~~~---- 191 (400)
T COG4671 135 -----------TRLV--LGLR--SIRDIPQELEADW--RRAETVRLINRF--YDLVLVYGDPDFYDPLTEFPFAPA---- 191 (400)
T ss_pred -----------Ccce--eehH--hhhhchhhhccch--hhhHHHHHHHHh--heEEEEecCccccChhhcCCccHh----
Confidence 0000 0000 0011111110000 001111122222 233333 455555444221100
Q ss_pred CCCCCCeEeeCcCcCCCCCCCCCCCCccchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHH-cCCceEEEEeCC
Q 011381 240 SFKPPPVYPVGPLIQTGSNNETNNDRSLECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEM-SGQRFLWVAKSP 318 (487)
Q Consensus 240 ~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~-~~~~~i~~~~~~ 318 (487)
-...+.|+|.+ ..+-+-.+. + |... +++--|.||-|.. ....+.+...+.|... .+.+-.|.+-.+
T Consensus 192 --i~~k~~ytG~v-q~~~~~~~~---p-----~~~~-pE~~~Ilvs~GGG-~dG~eLi~~~l~A~~~l~~l~~~~~ivtG 258 (400)
T COG4671 192 --IRAKMRYTGFV-QRSLPHLPL---P-----PHEA-PEGFDILVSVGGG-ADGAELIETALAAAQLLAGLNHKWLIVTG 258 (400)
T ss_pred --hhhheeEeEEe-eccCcCCCC---C-----CcCC-CccceEEEecCCC-hhhHHHHHHHHHHhhhCCCCCcceEEEeC
Confidence 01368999988 222111100 1 1111 4455788888863 3355666666666544 333424443332
Q ss_pred CccccccccccccCCCCCCCCCchhHHHhh-----cCCCceeccCCCc-ccccccCcccccccccCchhHHHHHhhCCce
Q 011381 319 HEEAANATYFSVQSMKDPLDFLPKGFLDRT-----KGVGLVVPSWAPQ-AQVLSHGSTGGFLSHCGWNSILESIVHGVPI 392 (487)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~~v~~~~~~pq-~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~ 392 (487)
.. +|..-.+++ +.+++.+..|-.+ ..++..++ .+|+-||.||++|=|.+|+|.
T Consensus 259 P~-------------------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~--~vVSm~GYNTvCeILs~~k~a 317 (400)
T COG4671 259 PF-------------------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR--LVVSMGGYNTVCEILSFGKPA 317 (400)
T ss_pred CC-------------------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh--eeeecccchhhhHHHhCCCce
Confidence 22 555433332 2367888888766 66888999 999999999999999999999
Q ss_pred ecccccc---cchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccC
Q 011381 393 IAWPLYS---EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 393 v~~P~~~---DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~ 441 (487)
+++|... +|-.-|.|+++ +|+--.+..++ +++..+++++...++.
T Consensus 318 LivPr~~p~eEQliRA~Rl~~-LGL~dvL~pe~---lt~~~La~al~~~l~~ 365 (400)
T COG4671 318 LIVPRAAPREEQLIRAQRLEE-LGLVDVLLPEN---LTPQNLADALKAALAR 365 (400)
T ss_pred EEeccCCCcHHHHHHHHHHHh-cCcceeeCccc---CChHHHHHHHHhcccC
Confidence 9999864 99999999999 99998888887 9999999999999884
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.47 E-value=3.1e-11 Score=121.52 Aligned_cols=166 Identities=10% Similarity=0.176 Sum_probs=112.2
Q ss_pred CCeEEEEEeCCCcCCCHHHHHHHHHHHHHc--CCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhh-cCCCce
Q 011381 278 SESVLFVCFGSGGTLSQEQLNELALGLEMS--GQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRT-KGVGLV 354 (487)
Q Consensus 278 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~v~ 354 (487)
++++|++..|+... ...+..+++++.+. +.+++++.+.+.. +-+.+.+.. ...++.
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~-------------------l~~~l~~~~~~~~~v~ 259 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE-------------------LKRSLTAKFKSNENVL 259 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH-------------------HHHHHHHHhccCCCeE
Confidence 45688888887642 24455566664332 3455555554321 111222222 124788
Q ss_pred eccCCCc-ccccccCcccccccccCchhHHHHHhhCCceecc-cccccchhhhHhhhcccceeEEEeecCCCccCHHHHH
Q 011381 355 VPSWAPQ-AQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAW-PLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIA 432 (487)
Q Consensus 355 ~~~~~pq-~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~ 432 (487)
+.+|+++ ..+++.+| ++|+..|..|+.||+++|+|+|++ |..+.|..|+..+++ .|+|+.+. +.+++.
T Consensus 260 ~~G~~~~~~~~~~~aD--l~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~-------~~~~l~ 329 (391)
T PRK13608 260 ILGYTKHMNEWMASSQ--LMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD-------TPEEAI 329 (391)
T ss_pred EEeccchHHHHHHhhh--EEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC-------CHHHHH
Confidence 8899865 56899999 999998888999999999999998 776777899999999 99998653 578899
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhc
Q 011381 433 NYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWKN 481 (487)
Q Consensus 433 ~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 481 (487)
++|.++++| ++.+++ +++..++. ....+.+..++.+.+.+.+
T Consensus 330 ~~i~~ll~~---~~~~~~---m~~~~~~~-~~~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 330 KIVASLTNG---NEQLTN---MISTMEQD-KIKYATQTICRDLLDLIGH 371 (391)
T ss_pred HHHHHHhcC---HHHHHH---HHHHHHHh-cCCCCHHHHHHHHHHHhhh
Confidence 999999988 544333 33333322 1346667777777666544
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.30 E-value=8.1e-10 Score=111.07 Aligned_cols=113 Identities=13% Similarity=0.165 Sum_probs=83.5
Q ss_pred CCceeccCCCc-ccccccCcccccccccCchhHHHHHhhCCceecccccccch-hhhHhhhcccceeEEEeecCCCccCH
Q 011381 351 VGLVVPSWAPQ-AQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQK-MNAVLLTDDLKVSFRVKVNENGLVGR 428 (487)
Q Consensus 351 ~~v~~~~~~pq-~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~-~na~~v~~~~G~G~~l~~~~~~~~~~ 428 (487)
.++.+.+|+++ .++++.+| ++|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+ .|.|+.+ . ++
T Consensus 265 ~~v~~~G~~~~~~~l~~aaD--v~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~--~-----~~ 334 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACD--CIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFS--E-----SP 334 (382)
T ss_pred CCeEEEeccccHHHHHHhCC--EEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeec--C-----CH
Confidence 36788899986 67899999 9999999999999999999999998777775 79999998 8999764 2 58
Q ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 011381 429 EDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIW 479 (487)
Q Consensus 429 ~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 479 (487)
+.+.++|.+++.+. ++.+++ +++..++. ....+.++.++.+.+.+
T Consensus 335 ~~la~~i~~ll~~~--~~~~~~---m~~~~~~~-~~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 335 KEIARIVAEWFGDK--SDELEA---MSENALKL-ARPEAVFDIVHDLHELV 379 (382)
T ss_pred HHHHHHHHHHHcCC--HHHHHH---HHHHHHHh-cCCchHHHHHHHHHHHh
Confidence 99999999999862 223333 33333321 13455555665555443
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.29 E-value=5e-10 Score=112.42 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=77.4
Q ss_pred ceeccCC-CcccccccCcccccccccCchhHHHHHhhCCceecccccccchhhhHhhhccc----ceeEEEeecCCCccC
Q 011381 353 LVVPSWA-PQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDL----KVSFRVKVNENGLVG 427 (487)
Q Consensus 353 v~~~~~~-pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~----G~G~~l~~~~~~~~~ 427 (487)
+.+..+. ....+++.++ ++|+-.|..| .|++..|+|+|++|.-..|. |+...++ . |.++.+.. .+
T Consensus 281 ~~v~~~~~~~~~~l~~AD--lvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~-~~~l~g~~~~l~~-----~~ 350 (396)
T TIGR03492 281 LEVLLGRGAFAEILHWAD--LGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEA-QSRLLGGSVFLAS-----KN 350 (396)
T ss_pred eEEEechHhHHHHHHhCC--EEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHh-hHhhcCCEEecCC-----CC
Confidence 4444443 3467899999 9999999766 99999999999999877776 9876665 4 66666653 35
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 011381 428 REDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLAR 477 (487)
Q Consensus 428 ~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 477 (487)
.+.|.+++.+++.| +..+++..+ ..++.++..+++.+.++.+.+
T Consensus 351 ~~~l~~~l~~ll~d---~~~~~~~~~---~~~~~lg~~~a~~~ia~~i~~ 394 (396)
T TIGR03492 351 PEQAAQVVRQLLAD---PELLERCRR---NGQERMGPPGASARIAESILK 394 (396)
T ss_pred HHHHHHHHHHHHcC---HHHHHHHHH---HHHHhcCCCCHHHHHHHHHHH
Confidence 69999999999998 665554442 222223356677666665544
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.24 E-value=1.5e-11 Score=105.03 Aligned_cols=122 Identities=19% Similarity=0.233 Sum_probs=76.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCcchHH
Q 011381 14 VAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDFQIET 93 (487)
Q Consensus 14 il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (487)
|+|++.|+.||++|+++||++|.+| ||+|++++++.. +...+. .|+.|..++.. ...+.......
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~r-Gh~V~~~~~~~~----------~~~v~~--~Gl~~~~~~~~--~~~~~~~~~~~ 65 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRR-GHEVRLATPPDF----------RERVEA--AGLEFVPIPGD--SRLPRSLEPLA 65 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT-T-EEEEEETGGG----------HHHHHH--TT-EEEESSSC--GGGGHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhcc-CCeEEEeecccc----------eecccc--cCceEEEecCC--cCcCcccchhh
Confidence 7899999999999999999999765 999999998854 333333 36999998754 01111111111
Q ss_pred HHHHHHH--HhHHHHHHHHHHHh--------ccCCceEEEeCCCcchHHHHHHHhCCCcEEEecchH
Q 011381 94 RITLTLV--RSLSSLRDALKVLA--------ESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTTTA 150 (487)
Q Consensus 94 ~~~~~~~--~~~~~l~~~l~~~~--------~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~ 150 (487)
.+..... .......+.+.+.. .....|+++.+.....+..+|+++|||++.....|.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 66 NLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred hhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 1111111 12222333333322 123678888888888888999999999998766643
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.19 E-value=2.6e-08 Score=98.76 Aligned_cols=111 Identities=20% Similarity=0.179 Sum_probs=79.9
Q ss_pred CCCceeccCCCccc---ccccCcccccccccC----chhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecC
Q 011381 350 GVGLVVPSWAPQAQ---VLSHGSTGGFLSHCG----WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE 422 (487)
Q Consensus 350 ~~~v~~~~~~pq~~---iL~~~~~~~~I~HgG----~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 422 (487)
..++.+.+|+++.+ ++..++ ++|+.+. .+++.||+++|+|+|+.+..+ +...++. .+.|...+..
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d--~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~-~~~g~~~~~~- 317 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASAD--VFVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTD-GENGLLVEPG- 317 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCC--EEEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcC-CcceEEcCCC-
Confidence 34788999998755 788899 7776553 478999999999999877553 5555666 6889887654
Q ss_pred CCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 011381 423 NGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIW 479 (487)
Q Consensus 423 ~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 479 (487)
+.+++.+++.+++.+ ++.+++..+-+.... +..+.+...+++++.+
T Consensus 318 ----~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 318 ----DAEAFAAALAALLAD---PELRRRMAARARAEA----ERRSWEAFLDNLLEAY 363 (364)
T ss_pred ----CHHHHHHHHHHHHcC---HHHHHHHHHHHHHHH----hhcCHHHHHHHHHHhh
Confidence 578899999999998 555444443333332 2466677777776654
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.17 E-value=5.5e-08 Score=100.47 Aligned_cols=128 Identities=17% Similarity=0.141 Sum_probs=81.5
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCC
Q 011381 281 VLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAP 360 (487)
Q Consensus 281 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~p 360 (487)
.+++..|+.. ..+.+..+++++++.+.-.+..+|.+.. -+.+....+..+|.+.+++|
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~ivG~G~~--------------------~~~l~~~~~~~~V~f~G~v~ 321 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFVGDGPY--------------------REELEKMFAGTPTVFTGMLQ 321 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEEeCChH--------------------HHHHHHHhccCCeEEeccCC
Confidence 4455567653 3445677888887764322334443221 13333344456888999998
Q ss_pred ccc---ccccCcccccccc----cCchhHHHHHhhCCceecccccccchhhhHhhhc--ccceeEEEeecCCCccCHHHH
Q 011381 361 QAQ---VLSHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTD--DLKVSFRVKVNENGLVGREDI 431 (487)
Q Consensus 361 q~~---iL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~--~~G~G~~l~~~~~~~~~~~~l 431 (487)
+.+ +++.+| +||.- |-..++.||+++|+|+|+....+ ....+.+ .-+.|..++.. +.+++
T Consensus 322 ~~ev~~~~~~aD--v~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~-----d~~~l 390 (465)
T PLN02871 322 GDELSQAYASGD--VFVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTPG-----DVDDC 390 (465)
T ss_pred HHHHHHHHHHCC--EEEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCCC-----CHHHH
Confidence 644 777888 66632 22457899999999999876532 1112211 03678877654 48999
Q ss_pred HHHHHHhccC
Q 011381 432 ANYAKGLIQG 441 (487)
Q Consensus 432 ~~av~~vl~~ 441 (487)
.++|.++++|
T Consensus 391 a~~i~~ll~~ 400 (465)
T PLN02871 391 VEKLETLLAD 400 (465)
T ss_pred HHHHHHHHhC
Confidence 9999999988
No 47
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.09 E-value=6.3e-07 Score=90.67 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=59.9
Q ss_pred CCCceeccCCCccc---ccccCcccccccc-cCc-hhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCC
Q 011381 350 GVGLVVPSWAPQAQ---VLSHGSTGGFLSH-CGW-NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENG 424 (487)
Q Consensus 350 ~~~v~~~~~~pq~~---iL~~~~~~~~I~H-gG~-gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 424 (487)
..+|.+.+++|+.+ ++..+++-++.+. .|. .++.||+++|+|+|+-. .......+.. -..|..++..
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~-~~~G~lv~~~--- 351 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITD-GENGLLVDFF--- 351 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhccc-CCceEEcCCC---
Confidence 35788999999765 5678883333232 232 48999999999999854 4455566666 5678877654
Q ss_pred ccCHHHHHHHHHHhccC
Q 011381 425 LVGREDIANYAKGLIQG 441 (487)
Q Consensus 425 ~~~~~~l~~av~~vl~~ 441 (487)
+++++.++|.+++++
T Consensus 352 --d~~~la~~i~~ll~~ 366 (396)
T cd03818 352 --DPDALAAAVIELLDD 366 (396)
T ss_pred --CHHHHHHHHHHHHhC
Confidence 589999999999998
No 48
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.05 E-value=1.7e-08 Score=91.89 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=109.0
Q ss_pred CeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhc-CCCceecc
Q 011381 279 ESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTK-GVGLVVPS 357 (487)
Q Consensus 279 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~~~~ 357 (487)
..-|+|+||. +......-+++..+.+.++.+-.++++... -++.++.+++ .+|+...-
T Consensus 158 ~r~ilI~lGG--sDpk~lt~kvl~~L~~~~~nl~iV~gs~~p-------------------~l~~l~k~~~~~~~i~~~~ 216 (318)
T COG3980 158 KRDILITLGG--SDPKNLTLKVLAELEQKNVNLHIVVGSSNP-------------------TLKNLRKRAEKYPNINLYI 216 (318)
T ss_pred hheEEEEccC--CChhhhHHHHHHHhhccCeeEEEEecCCCc-------------------chhHHHHHHhhCCCeeeEe
Confidence 3379999995 334445667888888888777677775432 3344554544 34555443
Q ss_pred CCC-cccccccCcccccccccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHH
Q 011381 358 WAP-QAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAK 436 (487)
Q Consensus 358 ~~p-q~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~ 436 (487)
... ...++..|+ +.|+-||. |+.|++.-|+|.+++|+...|---|+..+. +|+-..++.. ++.+.+...+.
T Consensus 217 ~~~dma~LMke~d--~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~~----l~~~~~~~~~~ 288 (318)
T COG3980 217 DTNDMAELMKEAD--LAISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGYH----LKDLAKDYEIL 288 (318)
T ss_pred cchhHHHHHHhcc--hheeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccCC----CchHHHHHHHH
Confidence 333 567999999 99998886 899999999999999999999999999999 8988777654 67888888888
Q ss_pred HhccCchhHHHHHHHHHHHHHH
Q 011381 437 GLIQGEEGKLLRKKMRALKDAA 458 (487)
Q Consensus 437 ~vl~~~~~~~~~~~a~~l~~~~ 458 (487)
++.+| ...|++.-..++.+
T Consensus 289 ~i~~d---~~~rk~l~~~~~~i 307 (318)
T COG3980 289 QIQKD---YARRKNLSFGSKLI 307 (318)
T ss_pred HhhhC---HHHhhhhhhcccee
Confidence 89888 66665554444433
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.05 E-value=1.3e-07 Score=93.32 Aligned_cols=80 Identities=21% Similarity=0.128 Sum_probs=60.4
Q ss_pred CCCceeccCCCccc---ccccCccccccc-----ccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeec
Q 011381 350 GVGLVVPSWAPQAQ---VLSHGSTGGFLS-----HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVN 421 (487)
Q Consensus 350 ~~~v~~~~~~pq~~---iL~~~~~~~~I~-----HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 421 (487)
..++.+.+++++.+ ++..++ ++|+ -|...++.||+++|+|+|+.+. ..+...+.+ .+.|..+...
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad--~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~-~~~g~~~~~~ 314 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEID--VLVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRD-GVNGLLFPPG 314 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCC--EEEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcC-CCcEEEECCC
Confidence 35788999997654 588888 6662 2334479999999999998654 345566666 5678877764
Q ss_pred CCCccCHHHHHHHHHHhccC
Q 011381 422 ENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 422 ~~~~~~~~~l~~av~~vl~~ 441 (487)
+.+++.+++.+++++
T Consensus 315 -----d~~~l~~~i~~l~~~ 329 (359)
T cd03823 315 -----DAEDLAAALERLIDD 329 (359)
T ss_pred -----CHHHHHHHHHHHHhC
Confidence 489999999999997
No 50
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.04 E-value=1.8e-07 Score=94.29 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=61.2
Q ss_pred CCceeccCCCccc---ccccCcccccccc----cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCC
Q 011381 351 VGLVVPSWAPQAQ---VLSHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 423 (487)
Q Consensus 351 ~~v~~~~~~pq~~---iL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
.++.+.+|+|+.+ ++..++ ++|+. |-..++.||+++|+|+|+-... .....+++ .+.|...+..
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~ad--i~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~-~~~g~~~~~~-- 353 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAAD--VFVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVD-GVTGLLVDPR-- 353 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCC--EEEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccC-CCCeEEeCCC--
Confidence 5788999999865 488888 66643 3346899999999999876643 35556667 6788887654
Q ss_pred CccCHHHHHHHHHHhccC
Q 011381 424 GLVGREDIANYAKGLIQG 441 (487)
Q Consensus 424 ~~~~~~~l~~av~~vl~~ 441 (487)
+.+++.++|.+++++
T Consensus 354 ---~~~~l~~~i~~l~~~ 368 (398)
T cd03800 354 ---DPEALAAALRRLLTD 368 (398)
T ss_pred ---CHHHHHHHHHHHHhC
Confidence 589999999999987
No 51
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.03 E-value=1.5e-08 Score=101.37 Aligned_cols=106 Identities=17% Similarity=0.122 Sum_probs=73.2
Q ss_pred CCceeccCCCc---ccccccCcccccccccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccC
Q 011381 351 VGLVVPSWAPQ---AQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVG 427 (487)
Q Consensus 351 ~~v~~~~~~pq---~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 427 (487)
.++.+.+.+++ ..+++.++ ++|+-.|. .+.||+++|+|+|.++-.++++. +.. .|.+..++ .+
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad--~vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~-~g~~~lv~------~d 320 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSH--LILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVE-AGTNKLVG------TD 320 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCC--EEEECChh-HHHHHHHcCCCEEECCCCCCChH----HHh-cCceEEeC------CC
Confidence 46777776664 35677888 88987764 47999999999999976666553 233 46666553 36
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 011381 428 REDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLAR 477 (487)
Q Consensus 428 ~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 477 (487)
+++|.+++.+++++ +..+++..+-. +....++++.+.++.+.+
T Consensus 321 ~~~i~~ai~~ll~~---~~~~~~~~~~~----~~~g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 321 KENITKAAKRLLTD---PDEYKKMSNAS----NPYGDGEASERIVEELLN 363 (365)
T ss_pred HHHHHHHHHHHHhC---hHHHHHhhhcC----CCCcCchHHHHHHHHHHh
Confidence 89999999999988 66665544332 222346677776666554
No 52
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.03 E-value=1.3e-07 Score=96.61 Aligned_cols=103 Identities=20% Similarity=0.186 Sum_probs=67.8
Q ss_pred ccccccCcccc-ccc----ccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHH
Q 011381 362 AQVLSHGSTGG-FLS----HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAK 436 (487)
Q Consensus 362 ~~iL~~~~~~~-~I~----HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~ 436 (487)
..+++.+| + |+. -+|..++.||+++|+|+|+-|...++......+.+ .|.++.+ . +++++.+++.
T Consensus 314 ~~~y~~aD--i~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~-~g~~~~~--~-----d~~~La~~l~ 383 (425)
T PRK05749 314 GLLYAIAD--IAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQ-AGAAIQV--E-----DAEDLAKAVT 383 (425)
T ss_pred HHHHHhCC--EEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHH-CCCeEEE--C-----CHHHHHHHHH
Confidence 45667788 5 331 13444699999999999999998888888877777 6766553 2 4889999999
Q ss_pred HhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 011381 437 GLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIW 479 (487)
Q Consensus 437 ~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 479 (487)
++++| +..+++..+-+....+. ..|...+.++.+.+.|
T Consensus 384 ~ll~~---~~~~~~m~~~a~~~~~~--~~~~~~~~~~~l~~~l 421 (425)
T PRK05749 384 YLLTD---PDARQAYGEAGVAFLKQ--NQGALQRTLQLLEPYL 421 (425)
T ss_pred HHhcC---HHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHhc
Confidence 99998 55444433333322221 3455555555554443
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.02 E-value=3.2e-07 Score=93.28 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=62.1
Q ss_pred CCcee-ccCCCccc---ccccCccccccc-c------cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEe
Q 011381 351 VGLVV-PSWAPQAQ---VLSHGSTGGFLS-H------CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVK 419 (487)
Q Consensus 351 ~~v~~-~~~~pq~~---iL~~~~~~~~I~-H------gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 419 (487)
.++++ .+|+|..+ +|+.++ ++|. + |--+++.||+++|+|+|+... ......+++ -+.|..++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aD--v~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~-~~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASAD--LGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKH-GENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCC--EEEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcC-CCCEEEEC
Confidence 35554 46887544 577888 5552 1 123479999999999998553 345566777 67888772
Q ss_pred ecCCCccCHHHHHHHHHHhccC---ch-hHHHHHHHHHHH
Q 011381 420 VNENGLVGREDIANYAKGLIQG---EE-GKLLRKKMRALK 455 (487)
Q Consensus 420 ~~~~~~~~~~~l~~av~~vl~~---~~-~~~~~~~a~~l~ 455 (487)
+.+++.++|.++++| ++ ...+.+++++.+
T Consensus 367 -------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 -------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred -------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 489999999999987 33 355555555544
No 54
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.00 E-value=2.9e-07 Score=91.68 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=58.7
Q ss_pred CCCceeccCCCccc---ccccCcccccccccC---------chhHHHHHhhCCceecccccccchhhhHhhhcccceeEE
Q 011381 350 GVGLVVPSWAPQAQ---VLSHGSTGGFLSHCG---------WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFR 417 (487)
Q Consensus 350 ~~~v~~~~~~pq~~---iL~~~~~~~~I~HgG---------~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~ 417 (487)
..++.+.+++++.+ ++..++ ++|.... -+++.||+++|+|+|+.+..+.+.. +.. .+.|..
T Consensus 274 ~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~----~~~-~~~g~~ 346 (394)
T cd03794 274 LDNVTFLGRVPKEELPELLAAAD--VGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL----VEE-AGAGLV 346 (394)
T ss_pred CCcEEEeCCCChHHHHHHHHhhC--eeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh----hcc-CCcceE
Confidence 45788889998654 677888 6653222 2347999999999999887665443 333 467777
Q ss_pred EeecCCCccCHHHHHHHHHHhccC
Q 011381 418 VKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 418 l~~~~~~~~~~~~l~~av~~vl~~ 441 (487)
++.. +.+++.+++.++++|
T Consensus 347 ~~~~-----~~~~l~~~i~~~~~~ 365 (394)
T cd03794 347 VPPG-----DPEALAAAILELLDD 365 (394)
T ss_pred eCCC-----CHHHHHHHHHHHHhC
Confidence 7654 589999999999987
No 55
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.99 E-value=1.6e-06 Score=85.44 Aligned_cols=111 Identities=16% Similarity=0.222 Sum_probs=77.1
Q ss_pred CCCceeccCCCccc---ccccCccccccc----ccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecC
Q 011381 350 GVGLVVPSWAPQAQ---VLSHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE 422 (487)
Q Consensus 350 ~~~v~~~~~~pq~~---iL~~~~~~~~I~----HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 422 (487)
..++.+.+++++.+ ++..++ ++|. -|..+++.||+++|+|+|+.+. ......+.+ .+.|...+..
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~-~~~g~~~~~~- 326 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAAD--VFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVED-GETGLLVPPG- 326 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcC--EEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcC-CcceEEeCCC-
Confidence 45788899997544 678888 6662 3556789999999999998665 456666676 6788877654
Q ss_pred CCccCHHHHHHHHHHhccCchhHHHHHHHHH-HHHHHHHhcCCCCChHHHHHHHHHHH
Q 011381 423 NGLVGREDIANYAKGLIQGEEGKLLRKKMRA-LKDAAANALSPDGSSTKSLAQLARIW 479 (487)
Q Consensus 423 ~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~-l~~~~~~~~~~~g~~~~~~~~~~~~l 479 (487)
+.+++.+++.+++++ +..++...+ ..+.+. +.-+.+...+++.+.+
T Consensus 327 ----~~~~l~~~i~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 327 ----DPEALAEAILRLLDD---PELRRRLGEAARERVA----ERFSWDRVAARTEEVY 373 (374)
T ss_pred ----CHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHhh
Confidence 489999999999988 554433333 332343 3556666666666543
No 56
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.97 E-value=1.8e-06 Score=87.85 Aligned_cols=165 Identities=11% Similarity=0.088 Sum_probs=95.0
Q ss_pred eEEEEEeCCCcCCCHHHHHHHHHHHHHcCC--ceEE-EEeCCCccccccccccccCCCCCCCCCchhHHH---hhcCCCc
Q 011381 280 SVLFVCFGSGGTLSQEQLNELALGLEMSGQ--RFLW-VAKSPHEEAANATYFSVQSMKDPLDFLPKGFLD---RTKGVGL 353 (487)
Q Consensus 280 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~--~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~v 353 (487)
+.+++..|+.. ..+.+..++++++.... ++-+ .+|.+. ..+.+.+ +..-.||
T Consensus 229 ~~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~ivG~g~--------------------~~~~l~~~~~~~~l~~v 286 (412)
T PRK10307 229 KKIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFVICGQGG--------------------GKARLEKMAQCRGLPNV 286 (412)
T ss_pred CEEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEEEECCCh--------------------hHHHHHHHHHHcCCCce
Confidence 35555667653 44556777777765521 2333 344321 1122222 1222478
Q ss_pred eeccCCCccc---ccccCcccccccccCc------hhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCC
Q 011381 354 VVPSWAPQAQ---VLSHGSTGGFLSHCGW------NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENG 424 (487)
Q Consensus 354 ~~~~~~pq~~---iL~~~~~~~~I~HgG~------gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 424 (487)
.+.+|+|+.+ +++.+|+.++.+..+. +.+.|++++|+|+|+....+.. ....+ . +.|+.++..
T Consensus 287 ~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i-~--~~G~~~~~~--- 358 (412)
T PRK10307 287 HFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLV-E--GIGVCVEPE--- 358 (412)
T ss_pred EEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHH-h--CCcEEeCCC---
Confidence 8999998754 6888885555444332 2368999999999998754321 11122 2 567777654
Q ss_pred ccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcC
Q 011381 425 LVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWKNP 482 (487)
Q Consensus 425 ~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 482 (487)
+.+++.++|.+++++ +..+++..+-+. +...+.-+.+..++++++.+++.
T Consensus 359 --d~~~la~~i~~l~~~---~~~~~~~~~~a~---~~~~~~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 359 --SVEALVAAIAALARQ---ALLRPKLGTVAR---EYAERTLDKENVLRQFIADIRGL 408 (412)
T ss_pred --CHHHHHHHHHHHHhC---HHHHHHHHHHHH---HHHHHHcCHHHHHHHHHHHHHHH
Confidence 589999999999987 433333222222 21123456667777777666543
No 57
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.94 E-value=1.1e-06 Score=87.70 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=73.0
Q ss_pred CCceeccCCCc-ccccccCcccccc----cccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCc
Q 011381 351 VGLVVPSWAPQ-AQVLSHGSTGGFL----SHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~~~~~~pq-~~iL~~~~~~~~I----~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.++.+.++.++ ..++..++ ++| .-|...++.||+++|+|+|+.. ....+..+++ -..|..++..
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d--~~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i~~-~~~G~~~~~~---- 321 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIAD--LFLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVVKH-GETGFLVDVG---- 321 (371)
T ss_pred ceEEEecCcccHHHHHHhcC--EEEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhhcC-CCceEEcCCC----
Confidence 35777777765 55788888 555 2344569999999999999854 3445666666 5678777654
Q ss_pred cCHHHHHHHHHHhccCchhHHHHHHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHh
Q 011381 426 VGREDIANYAKGLIQGEEGKLLRKKMRALKDAA-ANALSPDGSSTKSLAQLARIWK 480 (487)
Q Consensus 426 ~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~-~~~~~~~g~~~~~~~~~~~~l~ 480 (487)
+.+++.+++.+++++ +..+++..+-+... . +.-+.+..++++.+.++
T Consensus 322 -~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~----~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 322 -DVEAMAEYALSLLED---DELWQEFSRAARNRAA----ERFDSERIVPQYEALYR 369 (371)
T ss_pred -CHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHH
Confidence 589999999999987 44443333322222 2 24566666666665543
No 58
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.85 E-value=5.2e-06 Score=81.57 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=57.7
Q ss_pred CCceeccCCCc-ccccccCccccccccc----CchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCc
Q 011381 351 VGLVVPSWAPQ-AQVLSHGSTGGFLSHC----GWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~~~~~~pq-~~iL~~~~~~~~I~Hg----G~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.+|.+.++..+ ..++..++ ++|.-. -.+++.||+++|+|+|+-+.. .+...+.+ .+.|..++..
T Consensus 246 ~~v~~~g~~~~~~~~~~~ad--i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~-~~~g~~~~~~---- 314 (359)
T cd03808 246 GRVEFLGFRDDVPELLAAAD--VFVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVID-GVNGFLVPPG---- 314 (359)
T ss_pred ceEEEeeccccHHHHHHhcc--EEEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhhhc-CcceEEECCC----
Confidence 46777776443 55788888 666433 357899999999999986543 34555665 5778777653
Q ss_pred cCHHHHHHHHHHhccC
Q 011381 426 VGREDIANYAKGLIQG 441 (487)
Q Consensus 426 ~~~~~l~~av~~vl~~ 441 (487)
+.+++.+++.+++.+
T Consensus 315 -~~~~~~~~i~~l~~~ 329 (359)
T cd03808 315 -DAEALADAIERLIED 329 (359)
T ss_pred -CHHHHHHHHHHHHhC
Confidence 589999999999988
No 59
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.83 E-value=1.7e-06 Score=86.00 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=73.3
Q ss_pred CceeccCCC-cc---cccccCcccccccc----cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCC
Q 011381 352 GLVVPSWAP-QA---QVLSHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 423 (487)
Q Consensus 352 ~v~~~~~~p-q~---~iL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
++...+|++ +. .+++.++ ++|.- |..+++.||+++|+|+|+.... .....+.+ .+.|..++..
T Consensus 245 ~v~~~g~~~~~~~~~~~~~~ad--~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~-~~~g~~~~~~-- 315 (365)
T cd03825 245 PVHYLGSLNDDESLALIYSAAD--VFVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDH-GVTGYLAKPG-- 315 (365)
T ss_pred ceEecCCcCCHHHHHHHHHhCC--EEEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeC-CCceEEeCCC--
Confidence 677889998 33 4688888 67663 3457999999999999976543 33334445 4577766643
Q ss_pred CccCHHHHHHHHHHhccCchhHHHHHH-HHHHHHHHHHhcCCCCChHHHHHHHHHHHhc
Q 011381 424 GLVGREDIANYAKGLIQGEEGKLLRKK-MRALKDAAANALSPDGSSTKSLAQLARIWKN 481 (487)
Q Consensus 424 ~~~~~~~l~~av~~vl~~~~~~~~~~~-a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 481 (487)
+.+++.+++.+++++ +..+++ .++..+... +.-+.+...+++.+.+++
T Consensus 316 ---~~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 316 ---DPEDLAEGIEWLLAD---PDEREELGEAARELAE----NEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred ---CHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHhh
Confidence 588999999999988 443322 222222222 356767777777766543
No 60
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.83 E-value=6.4e-08 Score=96.62 Aligned_cols=130 Identities=15% Similarity=0.086 Sum_probs=84.2
Q ss_pred CeEEEEEeCCCcCC-CHHHHHHHHHHHHHcCCc-eEEEEeCCCccccccccccccCCCCCCCCCchhHHH---hhc--CC
Q 011381 279 ESVLFVCFGSGGTL-SQEQLNELALGLEMSGQR-FLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLD---RTK--GV 351 (487)
Q Consensus 279 ~~~v~vs~Gs~~~~-~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~--~~ 351 (487)
++.|++++|..... ..+.+..++++++....+ +.+++..+.. .-+.+.+ +.. ..
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~-------------------~~~~l~~~~~~~~~~~~ 258 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR-------------------TRPRIREAGLEFLGHHP 258 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC-------------------hHHHHHHHHHhhccCCC
Confidence 55788888775433 456678888888876433 4444432211 1112221 121 35
Q ss_pred CceeccCCCcc---cccccCcccccccccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccCH
Q 011381 352 GLVVPSWAPQA---QVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGR 428 (487)
Q Consensus 352 ~v~~~~~~pq~---~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~ 428 (487)
++.+.+..++. .++..++ +||+-.| |.+.||+++|+|+|+++.. |. +..+.+ .|+++.+. -+.
T Consensus 259 ~v~~~~~~~~~~~~~l~~~ad--~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~-~g~~~~~~------~~~ 324 (363)
T cd03786 259 NVLLISPLGYLYFLLLLKNAD--LVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVE-SGTNVLVG------TDP 324 (363)
T ss_pred CEEEECCcCHHHHHHHHHcCc--EEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhh-eeeEEecC------CCH
Confidence 67776655543 5677899 9999999 7788999999999998743 22 334445 57665553 247
Q ss_pred HHHHHHHHHhccC
Q 011381 429 EDIANYAKGLIQG 441 (487)
Q Consensus 429 ~~l~~av~~vl~~ 441 (487)
+.|.+++.+++++
T Consensus 325 ~~i~~~i~~ll~~ 337 (363)
T cd03786 325 EAILAAIEKLLSD 337 (363)
T ss_pred HHHHHHHHHHhcC
Confidence 8999999999987
No 61
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.81 E-value=1.2e-05 Score=79.26 Aligned_cols=113 Identities=16% Similarity=0.106 Sum_probs=73.1
Q ss_pred CCCceeccCCCcc---cccccCcccccc--cccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCC
Q 011381 350 GVGLVVPSWAPQA---QVLSHGSTGGFL--SHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENG 424 (487)
Q Consensus 350 ~~~v~~~~~~pq~---~iL~~~~~~~~I--~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 424 (487)
..++.+.+++++. .++..+++.++. +-|..+++.||+++|+|+|+-+.. .....+.+ .+.|...+..
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~-~~~g~~~~~~--- 329 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITD-GENGLLVPPG--- 329 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcC-CcceeEECCC---
Confidence 3578899999874 467778833322 235567899999999999986543 34555666 6667777654
Q ss_pred ccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh
Q 011381 425 LVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWK 480 (487)
Q Consensus 425 ~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 480 (487)
+.+++.+++.+++++ +.. +..++-.+.+.+ .-+.+...+++.+.++
T Consensus 330 --~~~~l~~~i~~~~~~---~~~-~~~~~~~~~~~~----~~s~~~~~~~~~~~~~ 375 (377)
T cd03798 330 --DPEALAEAILRLLAD---PWL-RLGRAARRRVAE----RFSWENVAERLLELYR 375 (377)
T ss_pred --CHHHHHHHHHHHhcC---cHH-HHhHHHHHHHHH----HhhHHHHHHHHHHHHh
Confidence 589999999999998 442 222222233322 3344455555555543
No 62
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.80 E-value=1.1e-05 Score=79.90 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=59.7
Q ss_pred CCceeccCCCccc---ccccCcccccccc----cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCC
Q 011381 351 VGLVVPSWAPQAQ---VLSHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 423 (487)
Q Consensus 351 ~~v~~~~~~pq~~---iL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
.++.+.+++|+.+ ++..++ ++|.- |...++.||+++|+|+|+... ...+..+.+ .+.|..++..+
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad--~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~-~~~g~~~~~~~- 330 (374)
T cd03817 259 DRVIFTGFVPREELPDYYKAAD--LFVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVAD-GENGFLFPPGD- 330 (374)
T ss_pred CcEEEeccCChHHHHHHHHHcC--EEEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheec-CceeEEeCCCC-
Confidence 4788899999755 677888 55532 345789999999999998654 445566666 68888887654
Q ss_pred CccCHHHHHHHHHHhccC
Q 011381 424 GLVGREDIANYAKGLIQG 441 (487)
Q Consensus 424 ~~~~~~~l~~av~~vl~~ 441 (487)
. ++.+++.+++++
T Consensus 331 ----~-~~~~~i~~l~~~ 343 (374)
T cd03817 331 ----E-ALAEALLRLLQD 343 (374)
T ss_pred ----H-HHHHHHHHHHhC
Confidence 2 899999999998
No 63
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.80 E-value=5.8e-06 Score=83.33 Aligned_cols=78 Identities=18% Similarity=0.098 Sum_probs=57.1
Q ss_pred CCceeccCCCcc---cccccCcccccccc---cC-chhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCC
Q 011381 351 VGLVVPSWAPQA---QVLSHGSTGGFLSH---CG-WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 423 (487)
Q Consensus 351 ~~v~~~~~~pq~---~iL~~~~~~~~I~H---gG-~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
.+|.+.+++|+. .++..++ +++.. -| ..++.||+++|+|+|+.-.. .....+.. -+.|..++
T Consensus 280 ~~V~f~g~~~~~~~~~~l~~ad--~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~-~~~g~~~~---- 348 (392)
T cd03805 280 DQVIFLPSISDSQKELLLSSAR--ALLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVD-GETGFLCE---- 348 (392)
T ss_pred ceEEEeCCCChHHHHHHHhhCe--EEEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhcc-CCceEEeC----
Confidence 578999999976 4678888 55531 22 35789999999999987543 33444555 56777664
Q ss_pred CccCHHHHHHHHHHhccC
Q 011381 424 GLVGREDIANYAKGLIQG 441 (487)
Q Consensus 424 ~~~~~~~l~~av~~vl~~ 441 (487)
.+.+++.++|.+++++
T Consensus 349 --~~~~~~a~~i~~l~~~ 364 (392)
T cd03805 349 --PTPEEFAEAMLKLAND 364 (392)
T ss_pred --CCHHHHHHHHHHHHhC
Confidence 2588999999999988
No 64
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.79 E-value=8.2e-06 Score=82.73 Aligned_cols=111 Identities=16% Similarity=0.061 Sum_probs=73.1
Q ss_pred CCceeccCCCcc---cccccCccccccc---c-cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCC
Q 011381 351 VGLVVPSWAPQA---QVLSHGSTGGFLS---H-CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 423 (487)
Q Consensus 351 ~~v~~~~~~pq~---~iL~~~~~~~~I~---H-gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
.+|.+.+++|+. ++++.++ ++|. + |...++.||+++|+|+|+.... .....+.+ -+.|..++..
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad--~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~-~~~g~~~~~~-- 353 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAAD--VVAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVAD-GETGLLVDGH-- 353 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCC--EEEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhcc-CCceEECCCC--
Confidence 478899999864 5788899 6653 2 3345899999999999986543 34445566 5678777654
Q ss_pred CccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh
Q 011381 424 GLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWK 480 (487)
Q Consensus 424 ~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 480 (487)
+.+++.+++.+++++ +..++++.+-+.... +.-+-+...+++.+.++
T Consensus 354 ---d~~~la~~i~~~l~~---~~~~~~~~~~~~~~~----~~fsw~~~~~~~~~~y~ 400 (405)
T TIGR03449 354 ---DPADWADALARLLDD---PRTRIRMGAAAVEHA----AGFSWAATADGLLSSYR 400 (405)
T ss_pred ---CHHHHHHHHHHHHhC---HHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHH
Confidence 589999999999988 444433333222222 23455555555555443
No 65
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.75 E-value=1.1e-05 Score=78.48 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=69.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCcch
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDFQI 91 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (487)
|+|.+=- ...-|+.=+..+.++|.+ +||+|.+.+-... ....+...+ ++.+..++.. + ...
T Consensus 1 MkIwiDi-~~p~hvhfFk~~I~eL~~-~GheV~it~R~~~--------~~~~LL~~y--g~~y~~iG~~---g----~~~ 61 (335)
T PF04007_consen 1 MKIWIDI-THPAHVHFFKNIIRELEK-RGHEVLITARDKD--------ETEELLDLY--GIDYIVIGKH---G----DSL 61 (335)
T ss_pred CeEEEEC-CCchHHHHHHHHHHHHHh-CCCEEEEEEeccc--------hHHHHHHHc--CCCeEEEcCC---C----CCH
Confidence 4454433 334499999999999965 5999998876654 445666655 4777766532 1 111
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecc
Q 011381 92 ETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTT 148 (487)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~ 148 (487)
...+.....+ .-.+...+. +.+||++|+-. ...+..+|.-+|+|+|.+.=.
T Consensus 62 ~~Kl~~~~~R-~~~l~~~~~----~~~pDv~is~~-s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 62 YGKLLESIER-QYKLLKLIK----KFKPDVAISFG-SPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred HHHHHHHHHH-HHHHHHHHH----hhCCCEEEecC-cHHHHHHHHHhCCCeEEEecC
Confidence 2222222211 122223333 45999999755 566677999999999987644
No 66
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.65 E-value=4.7e-05 Score=78.13 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=72.0
Q ss_pred CCceeccCCCcccc---cccC----cccccccc----cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEe
Q 011381 351 VGLVVPSWAPQAQV---LSHG----STGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVK 419 (487)
Q Consensus 351 ~~v~~~~~~pq~~i---L~~~----~~~~~I~H----gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 419 (487)
.+|.+.+++++.++ +..+ + +||.- |=..++.||+++|+|+|+-... .+...+.+ -..|+.++
T Consensus 317 ~~V~f~g~~~~~~~~~~~~~a~~~~D--v~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~-~~~G~lv~ 389 (439)
T TIGR02472 317 GKVAYPKHHRPDDVPELYRLAARSRG--IFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIAN-CRNGLLVD 389 (439)
T ss_pred ceEEecCCCCHHHHHHHHHHHhhcCC--EEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcC-CCcEEEeC
Confidence 45777788776554 5444 5 77653 3345999999999999987653 34455555 56788877
Q ss_pred ecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 011381 420 VNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIW 479 (487)
Q Consensus 420 ~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 479 (487)
.. +++++.++|.++++| +..+ +++++..++.+.+.-+-+..++++.+.|
T Consensus 390 ~~-----d~~~la~~i~~ll~~---~~~~---~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 390 VL-----DLEAIASALEDALSD---SSQW---QLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CC-----CHHHHHHHHHHHHhC---HHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 64 589999999999998 5433 2333333332224556666666665544
No 67
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.64 E-value=2.8e-05 Score=75.95 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=61.3
Q ss_pred CCceeccCCC-cccccccCccccccccc----CchhHHHHHhhCCceecccccccchhhhHhhhcccc-eeEEEeecCCC
Q 011381 351 VGLVVPSWAP-QAQVLSHGSTGGFLSHC----GWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLK-VSFRVKVNENG 424 (487)
Q Consensus 351 ~~v~~~~~~p-q~~iL~~~~~~~~I~Hg----G~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~ 424 (487)
.++.+.++.. -..++..++ ++|.-. ..+++.||+++|+|+|+.+..+.+. .+.. .| .|..++..
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad--~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~-~~~~g~~~~~~--- 304 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKAS--IFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIE-DGVNGLLVPNG--- 304 (348)
T ss_pred CeEEEcCCcchHHHHHHhCC--EEEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhc-cCcceEEeCCC---
Confidence 3566666633 256778888 555443 2568999999999999876544332 2334 34 78777654
Q ss_pred ccCHHHHHHHHHHhccCchhHHHHHHHHHHHH
Q 011381 425 LVGREDIANYAKGLIQGEEGKLLRKKMRALKD 456 (487)
Q Consensus 425 ~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~ 456 (487)
+.+++.+++.++++| ++.+++..+-+.
T Consensus 305 --~~~~~~~~i~~ll~~---~~~~~~~~~~~~ 331 (348)
T cd03820 305 --DVEALAEALLRLMED---EELRKRMGANAR 331 (348)
T ss_pred --CHHHHHHHHHHHHcC---HHHHHHHHHHHH
Confidence 579999999999998 665555544433
No 68
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.63 E-value=4.8e-05 Score=75.77 Aligned_cols=79 Identities=18% Similarity=0.118 Sum_probs=60.9
Q ss_pred CCceeccCCCccc---ccccCccccccc----------ccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEE
Q 011381 351 VGLVVPSWAPQAQ---VLSHGSTGGFLS----------HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFR 417 (487)
Q Consensus 351 ~~v~~~~~~pq~~---iL~~~~~~~~I~----------HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~ 417 (487)
.++.+.+++|+.+ ++..++ ++|. -|-.+++.||+++|+|+|+-+.. .+...+.+ .+.|..
T Consensus 245 ~~v~~~g~~~~~~l~~~~~~ad--~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~-~~~g~~ 317 (367)
T cd05844 245 GRVTFLGAQPHAEVRELMRRAR--IFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVED-GETGLL 317 (367)
T ss_pred CeEEECCCCCHHHHHHHHHhCC--EEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhheec-CCeeEE
Confidence 4688899998654 588888 5553 23357899999999999987654 35666667 688887
Q ss_pred EeecCCCccCHHHHHHHHHHhccC
Q 011381 418 VKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 418 l~~~~~~~~~~~~l~~av~~vl~~ 441 (487)
++.. +.+++.+++.+++++
T Consensus 318 ~~~~-----d~~~l~~~i~~l~~~ 336 (367)
T cd05844 318 VPEG-----DVAALAAALGRLLAD 336 (367)
T ss_pred ECCC-----CHHHHHHHHHHHHcC
Confidence 7654 589999999999998
No 69
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.62 E-value=2.7e-05 Score=77.69 Aligned_cols=131 Identities=16% Similarity=0.182 Sum_probs=79.8
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHHcCCce-EEEEeCCCccccccccccccCCCCCCCCCchhHHHhhc----CCCcee
Q 011381 281 VLFVCFGSGGTLSQEQLNELALGLEMSGQRF-LWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTK----GVGLVV 355 (487)
Q Consensus 281 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~----~~~v~~ 355 (487)
.+++..|.......+.+..+++++.+...++ ++.+|.+.. -+.+.+.++ ..+|.+
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~--------------------~~~l~~~~~~~~l~~~v~f 240 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSD--------------------FEKCKAYSRELGIEQRIIW 240 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCcc--------------------HHHHHHHHHHcCCCCeEEE
Confidence 5566667653323455677888887764333 333443221 011221111 347888
Q ss_pred ccCCCc--c---cccccCccccccc--c--cCchhHHHHHhhCCceeccc-ccccchhhhHhhhcccceeEEEeecCCCc
Q 011381 356 PSWAPQ--A---QVLSHGSTGGFLS--H--CGWNSILESIVHGVPIIAWP-LYSEQKMNAVLLTDDLKVSFRVKVNENGL 425 (487)
Q Consensus 356 ~~~~pq--~---~iL~~~~~~~~I~--H--gG~gt~~eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.+|+++ . +.+..++ ++|. + |-..++.||+++|+|+|+.- ..+ ....+++ -..|..++..
T Consensus 241 ~G~~~~~~~~~~~~~~~~d--~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~-~~~G~lv~~~---- 309 (359)
T PRK09922 241 HGWQSQPWEVVQQKIKNVS--ALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKP-GLNGELYTPG---- 309 (359)
T ss_pred ecccCCcHHHHHHHHhcCc--EEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccC-CCceEEECCC----
Confidence 888754 2 2344566 5553 2 33579999999999999865 332 2234555 5678777654
Q ss_pred cCHHHHHHHHHHhccCch
Q 011381 426 VGREDIANYAKGLIQGEE 443 (487)
Q Consensus 426 ~~~~~l~~av~~vl~~~~ 443 (487)
+.+++.++|.+++++.+
T Consensus 310 -d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 310 -NIDEFVGKLNKVISGEV 326 (359)
T ss_pred -CHHHHHHHHHHHHhCcc
Confidence 59999999999999843
No 70
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.61 E-value=3.4e-05 Score=76.33 Aligned_cols=130 Identities=12% Similarity=0.012 Sum_probs=83.5
Q ss_pred eEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEE-EeCCCccccccccccccCCCCCCCCCchhHHH---h-hcCCCce
Q 011381 280 SVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWV-AKSPHEEAANATYFSVQSMKDPLDFLPKGFLD---R-TKGVGLV 354 (487)
Q Consensus 280 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~-~~~~~v~ 354 (487)
..+++..|+.. ..+....+++++++.. ++-+. ++.+.. .+.+.+ + -...||.
T Consensus 191 ~~~i~~~G~~~--~~K~~~~li~a~~~l~-~~~l~i~G~g~~--------------------~~~~~~~~~~~~~~~~V~ 247 (357)
T cd03795 191 RPFFLFVGRLV--YYKGLDVLLEAAAALP-DAPLVIVGEGPL--------------------EAELEALAAALGLLDRVR 247 (357)
T ss_pred CcEEEEecccc--cccCHHHHHHHHHhcc-CcEEEEEeCChh--------------------HHHHHHHHHhcCCcceEE
Confidence 35667777753 3455677888888877 33333 332211 111211 1 1245899
Q ss_pred eccCCCcc---cccccCccccccc---ccC-chhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccC
Q 011381 355 VPSWAPQA---QVLSHGSTGGFLS---HCG-WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVG 427 (487)
Q Consensus 355 ~~~~~pq~---~iL~~~~~~~~I~---HgG-~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 427 (487)
+.+|+|+. .++..+++.++.+ +.| ..++.||+++|+|+|+....+....... . -+.|...+.. +
T Consensus 248 ~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~-~~~g~~~~~~-----d 318 (357)
T cd03795 248 FLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---H-GVTGLVVPPG-----D 318 (357)
T ss_pred EcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---C-CCceEEeCCC-----C
Confidence 99999974 4777788444433 234 3479999999999999776655543332 2 4677776643 5
Q ss_pred HHHHHHHHHHhccC
Q 011381 428 REDIANYAKGLIQG 441 (487)
Q Consensus 428 ~~~l~~av~~vl~~ 441 (487)
.+++.++|.+++++
T Consensus 319 ~~~~~~~i~~l~~~ 332 (357)
T cd03795 319 PAALAEAIRRLLED 332 (357)
T ss_pred HHHHHHHHHHHHHC
Confidence 89999999999998
No 71
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.60 E-value=0.00022 Score=78.23 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=58.9
Q ss_pred CCceeccCCCccc---ccccCc--ccccccc----cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeec
Q 011381 351 VGLVVPSWAPQAQ---VLSHGS--TGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVN 421 (487)
Q Consensus 351 ~~v~~~~~~pq~~---iL~~~~--~~~~I~H----gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 421 (487)
.+|.+.+++++.+ ++..++ .++||.= |=..++.||+++|+|+|+-...+ ....+.. -..|+.++..
T Consensus 548 g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~-g~nGlLVdP~ 622 (1050)
T TIGR02468 548 GQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRV-LDNGLLVDPH 622 (1050)
T ss_pred CeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhcc-CCcEEEECCC
Confidence 4577788888754 344331 1256542 33458999999999999986543 3334444 4568888764
Q ss_pred CCCccCHHHHHHHHHHhccCchhHHHHHHH
Q 011381 422 ENGLVGREDIANYAKGLIQGEEGKLLRKKM 451 (487)
Q Consensus 422 ~~~~~~~~~l~~av~~vl~~~~~~~~~~~a 451 (487)
+++.|+++|.+++++ +..+++.
T Consensus 623 -----D~eaLA~AL~~LL~D---pelr~~m 644 (1050)
T TIGR02468 623 -----DQQAIADALLKLVAD---KQLWAEC 644 (1050)
T ss_pred -----CHHHHHHHHHHHhhC---HHHHHHH
Confidence 589999999999998 4444433
No 72
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.59 E-value=0.00011 Score=72.50 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=58.4
Q ss_pred CCceeccCCCcc---cccccCccccccc--------ccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEe
Q 011381 351 VGLVVPSWAPQA---QVLSHGSTGGFLS--------HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVK 419 (487)
Q Consensus 351 ~~v~~~~~~pq~---~iL~~~~~~~~I~--------HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 419 (487)
.+|.+.+++|+. .++..+++.++-+ -|.-+++.||+++|+|+|+.+..+ ....+.+ ...|..++
T Consensus 236 ~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~-~~~g~~~~ 310 (355)
T cd03799 236 DRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVED-GETGLLVP 310 (355)
T ss_pred CeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhC-CCceEEeC
Confidence 578999999864 4667788433322 234578999999999999876532 3334455 44787776
Q ss_pred ecCCCccCHHHHHHHHHHhccC
Q 011381 420 VNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 420 ~~~~~~~~~~~l~~av~~vl~~ 441 (487)
.. +.+++.+++.+++.+
T Consensus 311 ~~-----~~~~l~~~i~~~~~~ 327 (355)
T cd03799 311 PG-----DPEALADAIERLLDD 327 (355)
T ss_pred CC-----CHHHHHHHHHHHHhC
Confidence 43 589999999999988
No 73
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=0.00013 Score=71.24 Aligned_cols=60 Identities=22% Similarity=0.199 Sum_probs=54.4
Q ss_pred cccccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccC
Q 011381 373 FLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 373 ~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~ 441 (487)
++-+||.| ..|++++|+|+|.=|+..-|.+-++++.. .|.|+.++. .+.+.+++..+++|
T Consensus 327 lv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~-~ga~~~v~~-------~~~l~~~v~~l~~~ 386 (419)
T COG1519 327 LVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQ-AGAGLQVED-------ADLLAKAVELLLAD 386 (419)
T ss_pred ccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHh-cCCeEEECC-------HHHHHHHHHHhcCC
Confidence 45699998 89999999999999999999999999999 999999963 67889999888887
No 74
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.56 E-value=5.2e-05 Score=75.09 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=68.9
Q ss_pred CCceecc-CCCc---ccccccCcccccc--cc----cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEee
Q 011381 351 VGLVVPS-WAPQ---AQVLSHGSTGGFL--SH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKV 420 (487)
Q Consensus 351 ~~v~~~~-~~pq---~~iL~~~~~~~~I--~H----gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 420 (487)
.+|.+.+ |+|+ ..+++.++ ++| +. |..+++.||+++|+|+|+-+..+ ...+.. .+.|..++.
T Consensus 247 ~~v~~~~~~~~~~~~~~~~~~ad--~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~-~~~g~~~~~ 318 (366)
T cd03822 247 DRVIFINRYLPDEELPELFSAAD--VVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLD-GGTGLLVPP 318 (366)
T ss_pred CcEEEecCcCCHHHHHHHHhhcC--EEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeee-CCCcEEEcC
Confidence 4666654 4886 45777888 555 22 34568999999999999977654 334455 577877765
Q ss_pred cCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 011381 421 NENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARI 478 (487)
Q Consensus 421 ~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 478 (487)
. +.+++.+++.+++++ +..+.+..+-+....+ + -+-+...+++.+.
T Consensus 319 ~-----d~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~---~-~s~~~~~~~~~~~ 364 (366)
T cd03822 319 G-----DPAALAEAIRRLLAD---PELAQALRARAREYAR---A-MSWERVAERYLRL 364 (366)
T ss_pred C-----CHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHh---h-CCHHHHHHHHHHH
Confidence 4 489999999999998 4433333222222221 2 4555566555544
No 75
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.54 E-value=6.8e-05 Score=74.14 Aligned_cols=107 Identities=15% Similarity=0.003 Sum_probs=66.3
Q ss_pred CCceeccCCCccc---ccccCcccccccc--cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCc
Q 011381 351 VGLVVPSWAPQAQ---VLSHGSTGGFLSH--CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~~~~~~pq~~---iL~~~~~~~~I~H--gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.++.+.+|+++.+ ++..+++-++-++ |-.+++.||+++|+|+|+.+.. .....+.. +.|...+.
T Consensus 262 ~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~~----- 330 (375)
T cd03821 262 DRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVDD----- 330 (375)
T ss_pred ceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeCC-----
Confidence 5788999999654 5788884333332 2246899999999999997643 23333333 66666542
Q ss_pred cCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 011381 426 VGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQL 475 (487)
Q Consensus 426 ~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 475 (487)
+.+++.+++.+++++ ++.+++..+-+.... .+.-+.+..++++
T Consensus 331 -~~~~~~~~i~~l~~~---~~~~~~~~~~~~~~~---~~~~s~~~~~~~~ 373 (375)
T cd03821 331 -DVDALAAALRRALEL---PQRLKAMGENGRALV---EERFSWTAIAQQL 373 (375)
T ss_pred -ChHHHHHHHHHHHhC---HHHHHHHHHHHHHHH---HHhcCHHHHHHHh
Confidence 358999999999998 443333333333221 1345555555544
No 76
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.54 E-value=7e-06 Score=80.38 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=69.7
Q ss_pred ccccccCcccccccccCchhHHHHHhhCCceeccccc--ccchhhhHhhh---cccceeEEEe-------------ecCC
Q 011381 362 AQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLY--SEQKMNAVLLT---DDLKVSFRVK-------------VNEN 423 (487)
Q Consensus 362 ~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~--~DQ~~na~~v~---~~~G~G~~l~-------------~~~~ 423 (487)
.+++..+| ++|+-.|..|+ |+..+|+|||+ ++- .=|+.||+++. . .|+...+- -++
T Consensus 230 ~~~m~~aD--lal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~- 303 (347)
T PRK14089 230 HKALLEAE--FAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEF- 303 (347)
T ss_pred HHHHHhhh--HHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhccc-
Confidence 56889999 99999999988 99999999988 553 46899999999 5 66664442 133
Q ss_pred CccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 011381 424 GLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQL 475 (487)
Q Consensus 424 ~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 475 (487)
+|++.|.+++.+ +.. +.+++...++.+.+. + |++++..+.+
T Consensus 304 --~t~~~la~~i~~-~~~---~~~~~~~~~l~~~l~----~-~a~~~~A~~i 344 (347)
T PRK14089 304 --VTVENLLKAYKE-MDR---EKFFKKSKELREYLK----H-GSAKNVAKIL 344 (347)
T ss_pred --CCHHHHHHHHHH-HHH---HHHHHHHHHHHHHhc----C-CHHHHHHHHH
Confidence 899999999977 222 455555555555553 3 5655554443
No 77
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.54 E-value=2.5e-05 Score=76.43 Aligned_cols=79 Identities=19% Similarity=0.135 Sum_probs=55.9
Q ss_pred CCceeccCCCc-ccccccCcccccc--cc--cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCc
Q 011381 351 VGLVVPSWAPQ-AQVLSHGSTGGFL--SH--CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~~~~~~pq-~~iL~~~~~~~~I--~H--gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.++.+.++.+. ..++..++ ++| ++ |..+++.||+++|+|+|+.... .....+.+ .+.|...+..
T Consensus 246 ~~v~~~g~~~~~~~~~~~~d--~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~-~~~g~~~~~~---- 314 (353)
T cd03811 246 DRVHFLGFQSNPYPYLKAAD--LFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILED-GENGLLVPVG---- 314 (353)
T ss_pred ccEEEecccCCHHHHHHhCC--EEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcC-CCceEEECCC----
Confidence 46777788765 45788888 555 22 3456899999999999985543 55666777 7888888765
Q ss_pred cCHHHH---HHHHHHhccC
Q 011381 426 VGREDI---ANYAKGLIQG 441 (487)
Q Consensus 426 ~~~~~l---~~av~~vl~~ 441 (487)
+.+.+ .+++...+.+
T Consensus 315 -~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 315 -DEAALAAAALALLDLLLD 332 (353)
T ss_pred -CHHHHHHHHHHHHhccCC
Confidence 46666 5666666666
No 78
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.50 E-value=0.00013 Score=73.79 Aligned_cols=111 Identities=13% Similarity=0.115 Sum_probs=67.6
Q ss_pred CCceeccCCCcc---cccccCccccccc---ccCch-hHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCC
Q 011381 351 VGLVVPSWAPQA---QVLSHGSTGGFLS---HCGWN-SILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 423 (487)
Q Consensus 351 ~~v~~~~~~pq~---~iL~~~~~~~~I~---HgG~g-t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
.+|.+.+|+|+. .+++.++ ++|. +-|.| ++.||+++|+|+|+-+..+ ....+.+ |.+....
T Consensus 250 ~~v~~~G~~~~~~~~~~l~~ad--~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~---- 317 (398)
T cd03796 250 DRVELLGAVPHERVRDVLVQGH--IFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE---- 317 (398)
T ss_pred CeEEEeCCCCHHHHHHHHHhCC--EEEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC----
Confidence 458888999864 4777788 5553 33443 9999999999999977643 2233434 4343332
Q ss_pred CccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhc
Q 011381 424 GLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWKN 481 (487)
Q Consensus 424 ~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 481 (487)
.+.+++.+++.+++++... -+...++.++.+. +.-|-+...+++++.+++
T Consensus 318 --~~~~~l~~~l~~~l~~~~~--~~~~~~~~~~~~~----~~fs~~~~~~~~~~~y~~ 367 (398)
T cd03796 318 --PDVESIVRKLEEAISILRT--GKHDPWSFHNRVK----KMYSWEDVAKRTEKVYDR 367 (398)
T ss_pred --CCHHHHHHHHHHHHhChhh--hhhHHHHHHHHHH----hhCCHHHHHHHHHHHHHH
Confidence 3579999999999986210 1011122223333 456767766666655544
No 79
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.49 E-value=7e-05 Score=73.48 Aligned_cols=153 Identities=14% Similarity=0.068 Sum_probs=89.4
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhh--cCCCceeccCC
Q 011381 282 LFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRT--KGVGLVVPSWA 359 (487)
Q Consensus 282 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~v~~~~~~ 359 (487)
+.+..|... ..+....+++++++.+.++++ ++.... .........+. ...++.+.+++
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i-~G~~~~-----------------~~~~~~~~~~~~~~~~~v~~~G~~ 232 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKL-AGPVSD-----------------PDYFYREIAPELLDGPDIEYLGEV 232 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEE-EeCCCC-----------------HHHHHHHHHHhcccCCcEEEeCCC
Confidence 444456652 344566788888888776554 443321 00001111111 14589999999
Q ss_pred Ccc---cccccCccccccc--ccC-chhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHH
Q 011381 360 PQA---QVLSHGSTGGFLS--HCG-WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIAN 433 (487)
Q Consensus 360 pq~---~iL~~~~~~~~I~--HgG-~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ 433 (487)
++. .+++.+++-++-+ +-| ..++.||+++|+|+|+-... .+...+.+ -..|..++ ..+++.+
T Consensus 233 ~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~-~~~g~l~~-------~~~~l~~ 300 (335)
T cd03802 233 GGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVED-GVTGFLVD-------SVEELAA 300 (335)
T ss_pred CHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeC-CCcEEEeC-------CHHHHHH
Confidence 985 4678888444333 234 34899999999999977653 33444455 34676664 2789999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 011381 434 YAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARI 478 (487)
Q Consensus 434 av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 478 (487)
++.+++.. . ++++++ .+. +.-+.+...+++++.
T Consensus 301 ~l~~l~~~---~--~~~~~~---~~~----~~~s~~~~~~~~~~~ 333 (335)
T cd03802 301 AVARADRL---D--RAACRR---RAE----RRFSAARMVDDYLAL 333 (335)
T ss_pred HHHHHhcc---H--HHHHHH---HHH----HhCCHHHHHHHHHHH
Confidence 99988654 1 223322 222 356666666666654
No 80
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.46 E-value=3.9e-06 Score=83.56 Aligned_cols=129 Identities=14% Similarity=0.159 Sum_probs=78.5
Q ss_pred CeEEEEEeCCC---cCCCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhc-CCCce
Q 011381 279 ESVLFVCFGSG---GTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTK-GVGLV 354 (487)
Q Consensus 279 ~~~v~vs~Gs~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~ 354 (487)
++.++|++=-. .....+.+..+++++...+.++++++..... ....+-+.+..... .+++.
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p---------------~~~~i~~~i~~~~~~~~~v~ 265 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA---------------GSRIINEAIEEYVNEHPNFR 265 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC---------------CchHHHHHHHHHhcCCCCEE
Confidence 45888888543 2234567889999998887666665533211 00001111111111 35677
Q ss_pred eccCCC---cccccccCcccccccccCchhHHHHHhhCCceecccccccchhhhHhhhc-ccceeEE-EeecCCCccCHH
Q 011381 355 VPSWAP---QAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTD-DLKVSFR-VKVNENGLVGRE 429 (487)
Q Consensus 355 ~~~~~p---q~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~-~~G~G~~-l~~~~~~~~~~~ 429 (487)
+.+-++ ...++.+++ ++|+.++.|- .||.+.|+|.|.+- + |-+- +.|.-+. ++ .+++
T Consensus 266 l~~~l~~~~~l~Ll~~a~--~vitdSSggi-~EA~~lg~Pvv~l~---~------R~e~~~~g~nvl~vg------~~~~ 327 (365)
T TIGR03568 266 LFKSLGQERYLSLLKNAD--AVIGNSSSGI-IEAPSFGVPTINIG---T------RQKGRLRADSVIDVD------PDKE 327 (365)
T ss_pred EECCCChHHHHHHHHhCC--EEEEcChhHH-HhhhhcCCCEEeec---C------CchhhhhcCeEEEeC------CCHH
Confidence 766544 466888999 9999875554 99999999999774 2 2222 0232222 32 4689
Q ss_pred HHHHHHHHhcc
Q 011381 430 DIANYAKGLIQ 440 (487)
Q Consensus 430 ~l~~av~~vl~ 440 (487)
+|.+++.++++
T Consensus 328 ~I~~a~~~~~~ 338 (365)
T TIGR03568 328 EIVKAIEKLLD 338 (365)
T ss_pred HHHHHHHHHhC
Confidence 99999999553
No 81
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.43 E-value=0.00055 Score=68.80 Aligned_cols=116 Identities=18% Similarity=0.175 Sum_probs=71.0
Q ss_pred Ccee-ccCCCc---ccccccCccccccc----ccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecC-
Q 011381 352 GLVV-PSWAPQ---AQVLSHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE- 422 (487)
Q Consensus 352 ~v~~-~~~~pq---~~iL~~~~~~~~I~----HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~- 422 (487)
+++. .+++++ ..++..+| ++|. -|...++.||+++|+|+|+... ......++. -+.|..++..+
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aD--v~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~-~~~G~~~~~~~~ 333 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAE--VFVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVD-GETGFLVPPDNS 333 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCC--EEEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhC-CCceEEcCCCCC
Confidence 3443 467775 44678888 6653 2334578999999999998654 345556666 67788887654
Q ss_pred CCccCHHHHHHHHHHhccCchhHHHHHHHHHHHH-HHHHhcCCCCChHHHHHHHHHHHhc
Q 011381 423 NGLVGREDIANYAKGLIQGEEGKLLRKKMRALKD-AAANALSPDGSSTKSLAQLARIWKN 481 (487)
Q Consensus 423 ~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~-~~~~~~~~~g~~~~~~~~~~~~l~~ 481 (487)
+..-..+.+.++|.+++++ +..+++..+-+. ... +.-+-+...+++.+.+++
T Consensus 334 ~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~a~~~~~----~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 334 DADGFQAELAKAINILLAD---PELAKKMGIAGRKRAE----EEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred cccchHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHh
Confidence 0001128999999999988 443333222222 222 345666666666665543
No 82
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.41 E-value=0.00035 Score=69.29 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=85.5
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHHcCCce-EEEEeCCCccccccccccccCCCCCCCCCchhHHHhh-cCCCceeccCCC
Q 011381 283 FVCFGSGGTLSQEQLNELALGLEMSGQRF-LWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRT-KGVGLVVPSWAP 360 (487)
Q Consensus 283 ~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~v~~~~~~p 360 (487)
++..|+.. ..+.+..+++++++...++ ++.+|.... ...+-..+.++. ...+|.+.+++|
T Consensus 196 i~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~ivG~~~~----------------~~~~~~~~~~~~~~~~~V~~~g~~~ 257 (363)
T cd04955 196 YLLVGRIV--PENNIDDLIEAFSKSNSGKKLVIVGNADH----------------NTPYGKLLKEKAAADPRIIFVGPIY 257 (363)
T ss_pred EEEEeccc--ccCCHHHHHHHHHhhccCceEEEEcCCCC----------------cchHHHHHHHHhCCCCcEEEccccC
Confidence 44567753 3445667788887765322 334444211 001111111111 245799999999
Q ss_pred ccc---ccccCcccccccccC----c-hhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHH
Q 011381 361 QAQ---VLSHGSTGGFLSHCG----W-NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIA 432 (487)
Q Consensus 361 q~~---iL~~~~~~~~I~HgG----~-gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~ 432 (487)
+.+ ++..++ +++-+.- . +++.||+++|+|+|+....+ +...+.. .|...+..+ .+.
T Consensus 258 ~~~~~~~~~~ad--~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~---~g~~~~~~~-------~l~ 321 (363)
T cd04955 258 DQELLELLRYAA--LFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGD---KAIYFKVGD-------DLA 321 (363)
T ss_pred hHHHHHHHHhCC--EEEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecC---CeeEecCch-------HHH
Confidence 864 555667 4544332 2 47999999999999876543 2222222 233333221 299
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 011381 433 NYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIW 479 (487)
Q Consensus 433 ~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 479 (487)
+++.+++++ ++.+.+ +++..++...+.-+.+...+++++.+
T Consensus 322 ~~i~~l~~~---~~~~~~---~~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 322 SLLEELEAD---PEEVSA---MAKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred HHHHHHHhC---HHHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999988 433333 22222222223566667777766543
No 83
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.39 E-value=0.00067 Score=67.08 Aligned_cols=95 Identities=13% Similarity=-0.006 Sum_probs=61.0
Q ss_pred CCceeccCCCc-ccccccCccccccc--ccC-chhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCcc
Q 011381 351 VGLVVPSWAPQ-AQVLSHGSTGGFLS--HCG-WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLV 426 (487)
Q Consensus 351 ~~v~~~~~~pq-~~iL~~~~~~~~I~--HgG-~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 426 (487)
.+|.+.+|.+. ..++..+++-++-+ +-| .+++.||+++|+|+|+.-.. .+...+.+ -+.|..++..
T Consensus 246 ~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~-~~~g~~~~~~----- 315 (355)
T cd03819 246 DRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRP-GETGLLVPPG----- 315 (355)
T ss_pred ceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhC-CCceEEeCCC-----
Confidence 46888888543 55788888444333 123 45999999999999886543 34455555 5578887654
Q ss_pred CHHHHHHHHHHhcc-Cch-hHHHHHHHHHHH
Q 011381 427 GREDIANYAKGLIQ-GEE-GKLLRKKMRALK 455 (487)
Q Consensus 427 ~~~~l~~av~~vl~-~~~-~~~~~~~a~~l~ 455 (487)
+.+.+.++|..++. +.+ -.+++++|++..
T Consensus 316 ~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~ 346 (355)
T cd03819 316 DAEALAQALDQILSLLPEGRAKMFAKARMCV 346 (355)
T ss_pred CHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 58899999976654 421 233444444443
No 84
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.37 E-value=0.00018 Score=71.28 Aligned_cols=109 Identities=13% Similarity=0.087 Sum_probs=69.5
Q ss_pred CCceeccCCCc-ccccccCcccccccc----cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCc
Q 011381 351 VGLVVPSWAPQ-AQVLSHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~~~~~~pq-~~iL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.++.+.++..+ ..++..++ ++|.- |..+++.||+++|+|+|+- |...+...+++ .|.. +...
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad--~~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~~--~~~~---- 311 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAAD--LFVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGLI--VPIS---- 311 (360)
T ss_pred CcEEEecccccHHHHHHhhc--eEEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-CceE--eCCC----
Confidence 46777777654 56788888 55442 2256899999999999874 55556666666 4544 3332
Q ss_pred cCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 011381 426 VGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIW 479 (487)
Q Consensus 426 ~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 479 (487)
+.+++.+++.+++++. +.+++...+-++.+. +.-+.+...+++.+.+
T Consensus 312 -~~~~~~~~i~~ll~~~--~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~y 358 (360)
T cd04951 312 -DPEALANKIDEILKMS--GEERDIIGARRERIV----KKFSINSIVQQWLTLY 358 (360)
T ss_pred -CHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHh
Confidence 5889999999998431 455554444334443 3556666666665543
No 85
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.34 E-value=0.00019 Score=72.63 Aligned_cols=111 Identities=19% Similarity=0.187 Sum_probs=72.4
Q ss_pred CCCceeccCCCc-ccccccCcccccc--cc--cCch-hHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCC
Q 011381 350 GVGLVVPSWAPQ-AQVLSHGSTGGFL--SH--CGWN-SILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 423 (487)
Q Consensus 350 ~~~v~~~~~~pq-~~iL~~~~~~~~I--~H--gG~g-t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
..+|.+.+++++ ..++..++ ++| ++ .|.+ .+.||+++|+|+|+.+...+.- .+. -|.|..+. .
T Consensus 279 ~~~V~~~G~v~~~~~~~~~ad--v~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~-~~~g~lv~-~-- 347 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAA--VAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DAL-PGAELLVA-A-- 347 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCC--EEEecccccCCcccHHHHHHHcCCCEEecCcccccc-----ccc-CCcceEeC-C--
Confidence 457888999986 45788888 555 32 3543 6999999999999988643321 123 46777665 3
Q ss_pred CccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh
Q 011381 424 GLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWK 480 (487)
Q Consensus 424 ~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 480 (487)
+++++.++|.++++| +..+++..+ ..++.+.+.-+-++.++++.+.+.
T Consensus 348 ---~~~~la~ai~~ll~~---~~~~~~~~~---~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 348 ---DPADFAAAILALLAN---PAEREELGQ---AARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred ---CHHHHHHHHHHHHcC---HHHHHHHHH---HHHHHHHHhCCHHHHHHHHHHHhc
Confidence 589999999999998 544333222 222212235666677777666553
No 86
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.34 E-value=0.0026 Score=68.41 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=39.3
Q ss_pred chhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhc
Q 011381 379 WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLI 439 (487)
Q Consensus 379 ~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl 439 (487)
..++.||+++|+|+|+--. ......|++ -.-|+.++.. +++.+.+++.+++
T Consensus 657 GLvvLEAMAcGlPVVAT~~----GG~~EiV~d-g~tGfLVdp~-----D~eaLA~aL~~ll 707 (784)
T TIGR02470 657 GLTVLEAMTCGLPTFATRF----GGPLEIIQD-GVSGFHIDPY-----HGEEAAEKIVDFF 707 (784)
T ss_pred CHHHHHHHHcCCCEEEcCC----CCHHHHhcC-CCcEEEeCCC-----CHHHHHHHHHHHH
Confidence 3589999999999988554 345566666 5678888765 4788999988875
No 87
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.34 E-value=0.00053 Score=67.44 Aligned_cols=107 Identities=19% Similarity=0.205 Sum_probs=65.9
Q ss_pred CceeccCCCc-ccccccCccccccccc----CchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCcc
Q 011381 352 GLVVPSWAPQ-AQVLSHGSTGGFLSHC----GWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLV 426 (487)
Q Consensus 352 ~v~~~~~~pq-~~iL~~~~~~~~I~Hg----G~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 426 (487)
++.+.+...+ ..+++.++ ++|..+ ..+++.||+++|+|+|+... ..+...+.+ .|..++..
T Consensus 252 ~v~~~g~~~~~~~~~~~ad--i~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~~----- 317 (365)
T cd03807 252 KVILLGERSDVPALLNALD--VFVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPPG----- 317 (365)
T ss_pred eEEEccccccHHHHHHhCC--EEEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCCC-----
Confidence 5555554433 56788888 666543 34799999999999998543 334444433 45555443
Q ss_pred CHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 011381 427 GREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARI 478 (487)
Q Consensus 427 ~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 478 (487)
+.+++.+++.+++++. +.+++.+++..+.++ +.-+.+...+.+.+.
T Consensus 318 ~~~~l~~~i~~l~~~~--~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~ 363 (365)
T cd03807 318 DPEALAEAIEALLADP--ALRQALGEAARERIE----ENFSIEAMVEAYEEL 363 (365)
T ss_pred CHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHH----HhCCHHHHHHHHHHH
Confidence 5889999999999872 223333333333333 355666666666554
No 88
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.27 E-value=0.002 Score=64.40 Aligned_cols=111 Identities=18% Similarity=0.132 Sum_probs=70.1
Q ss_pred CceeccCCCc-ccccccCcccccc--cc--cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCcc
Q 011381 352 GLVVPSWAPQ-AQVLSHGSTGGFL--SH--CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLV 426 (487)
Q Consensus 352 ~v~~~~~~pq-~~iL~~~~~~~~I--~H--gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 426 (487)
++.+.++..+ ..++..+| ++| ++ |-.+++.||+++|+|+|+-... .+...+++ -..|..++..
T Consensus 256 ~v~~~g~~~~~~~~~~~ad--i~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~-~~~g~~~~~~----- 323 (374)
T TIGR03088 256 LVWLPGERDDVPALMQALD--LFVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQH-GVTGALVPPG----- 323 (374)
T ss_pred eEEEcCCcCCHHHHHHhcC--EEEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcC-CCceEEeCCC-----
Confidence 4555555433 56788888 555 33 4456999999999999996653 34555555 4568777654
Q ss_pred CHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh
Q 011381 427 GREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWK 480 (487)
Q Consensus 427 ~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 480 (487)
+.+++.+++.+++++ +..++.. ++..++...+.-+.+...+++.+.+.
T Consensus 324 d~~~la~~i~~l~~~---~~~~~~~---~~~a~~~~~~~fs~~~~~~~~~~~y~ 371 (374)
T TIGR03088 324 DAVALARALQPYVSD---PAARRAH---GAAGRARAEQQFSINAMVAAYAGLYD 371 (374)
T ss_pred CHHHHHHHHHHHHhC---HHHHHHH---HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 589999999999987 4433222 22222211135566666666665544
No 89
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.22 E-value=0.0003 Score=69.67 Aligned_cols=85 Identities=19% Similarity=0.053 Sum_probs=57.4
Q ss_pred CCceeccCCCc-ccccccCcccccccc----cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCc
Q 011381 351 VGLVVPSWAPQ-AQVLSHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~~~~~~pq-~~iL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.++.+.++..+ ..++..++ ++|+- |-.+++.||+++|+|+|+-...+ ....+.+ +.|..+..
T Consensus 249 ~~v~~~g~~~~~~~~~~~ad--i~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~----- 315 (358)
T cd03812 249 DKVIFLGVRNDVPELLQAMD--VFLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLD----- 315 (358)
T ss_pred CcEEEecccCCHHHHHHhcC--EEEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCC-----
Confidence 46777777444 56788888 55532 44679999999999999866544 2333334 45544432
Q ss_pred cCHHHHHHHHHHhccCchhHHHHHHH
Q 011381 426 VGREDIANYAKGLIQGEEGKLLRKKM 451 (487)
Q Consensus 426 ~~~~~l~~av~~vl~~~~~~~~~~~a 451 (487)
-+++++.++|.+++++ +..+++.
T Consensus 316 ~~~~~~a~~i~~l~~~---~~~~~~~ 338 (358)
T cd03812 316 ESPEIWAEEILKLKSE---DRRERSS 338 (358)
T ss_pred CCHHHHHHHHHHHHhC---cchhhhh
Confidence 2579999999999998 5555444
No 90
>PLN00142 sucrose synthase
Probab=98.16 E-value=0.0021 Score=69.19 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=39.0
Q ss_pred cCch-hHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHh----ccC
Q 011381 377 CGWN-SILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGL----IQG 441 (487)
Q Consensus 377 gG~g-t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~v----l~~ 441 (487)
-|.| ++.||+++|+|+|+-.. ......+++ -..|..++.. +++.+.++|.++ ++|
T Consensus 677 EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~d-G~tG~LV~P~-----D~eaLA~aI~~lLekLl~D 736 (815)
T PLN00142 677 EAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVD-GVSGFHIDPY-----HGDEAANKIADFFEKCKED 736 (815)
T ss_pred cCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcC-CCcEEEeCCC-----CHHHHHHHHHHHHHHhcCC
Confidence 3444 89999999999988654 345556666 4578888765 477777777654 466
No 91
>PLN02275 transferase, transferring glycosyl groups
Probab=98.15 E-value=0.0034 Score=62.86 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=53.0
Q ss_pred CCceecc-CCCcccc---cccCccccccc-c-----cC-chhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEe
Q 011381 351 VGLVVPS-WAPQAQV---LSHGSTGGFLS-H-----CG-WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVK 419 (487)
Q Consensus 351 ~~v~~~~-~~pq~~i---L~~~~~~~~I~-H-----gG-~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 419 (487)
.|+++.+ |+|+.++ ++.+| ++|. + -| -+++.||+++|+|+|+... ..+...+++ -+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aD--v~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~-g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSAD--LGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKD-GKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCC--EEEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccC-CCCeEEEC
Confidence 4566544 7887554 88899 6662 1 12 3479999999999998653 335666666 67888874
Q ss_pred ecCCCccCHHHHHHHHHHhc
Q 011381 420 VNENGLVGREDIANYAKGLI 439 (487)
Q Consensus 420 ~~~~~~~~~~~l~~av~~vl 439 (487)
+++++.+++.++|
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 2688999998765
No 92
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.14 E-value=4.9e-06 Score=68.64 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=80.6
Q ss_pred eEEEEEeCCCcCCC---HHHHHHHHHHHHHcCC-ceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCcee
Q 011381 280 SVLFVCFGSGGTLS---QEQLNELALGLEMSGQ-RFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVV 355 (487)
Q Consensus 280 ~~v~vs~Gs~~~~~---~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~ 355 (487)
..+||+-||....+ .-.-++....|.+.|. +.|..++.+.. +..-|.....+..+-.+..
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~----------------~~~d~~~~~~k~~gl~id~ 67 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP----------------FFGDPIDLIRKNGGLTIDG 67 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc----------------CCCCHHHhhcccCCeEEEE
Confidence 48999999965211 1112446677778885 67778888643 0111111000111223455
Q ss_pred ccCCCc-ccccccCcccccccccCchhHHHHHhhCCceecccc----cccchhhhHhhhcccceeEEE
Q 011381 356 PSWAPQ-AQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPL----YSEQKMNAVLLTDDLKVSFRV 418 (487)
Q Consensus 356 ~~~~pq-~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~G~~l 418 (487)
.+|-|- .+....++ ++|.|+|+||++|.|..|+|.|+++- -..|-.-|..+++ .|.=..-
T Consensus 68 y~f~psl~e~I~~Ad--lVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~C 132 (170)
T KOG3349|consen 68 YDFSPSLTEDIRSAD--LVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYYC 132 (170)
T ss_pred EecCccHHHHHhhcc--EEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEEe
Confidence 777886 56667799 99999999999999999999999994 2468888999998 7765443
No 93
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.13 E-value=5.8e-06 Score=81.52 Aligned_cols=156 Identities=12% Similarity=0.094 Sum_probs=85.4
Q ss_pred CCCeEEEEEeCCCcCCC-H---HHHHHHHHHHHHc-CCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcC-
Q 011381 277 PSESVLFVCFGSGGTLS-Q---EQLNELALGLEMS-GQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKG- 350 (487)
Q Consensus 277 ~~~~~v~vs~Gs~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~- 350 (487)
..++.+++++=...+.. + ..+.++++++.+. +.++||.+..... ....+.+.++.
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~-------------------~~~~i~~~l~~~ 238 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR-------------------GSDIIIEKLKKY 238 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH-------------------HHHHHHHHHTT-
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch-------------------HHHHHHHHhccc
Confidence 44779999985544444 3 3455567777666 6778888774322 11122222221
Q ss_pred CCceeccCCC---cccccccCcccccccccCchhHH-HHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCcc
Q 011381 351 VGLVVPSWAP---QAQVLSHGSTGGFLSHCGWNSIL-ESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLV 426 (487)
Q Consensus 351 ~~v~~~~~~p---q~~iL~~~~~~~~I~HgG~gt~~-eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 426 (487)
.|+++..-++ ...+|.+++ ++|+..| +++ ||.+.|+|.|.+=..++.+.-- . .|..+.++ .
T Consensus 239 ~~v~~~~~l~~~~~l~ll~~a~--~vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe~r----~-~~~nvlv~------~ 303 (346)
T PF02350_consen 239 DNVRLIEPLGYEEYLSLLKNAD--LVVGDSS--GIQEEAPSLGKPVVNIRDSGERQEGR----E-RGSNVLVG------T 303 (346)
T ss_dssp TTEEEE----HHHHHHHHHHES--EEEESSH--HHHHHGGGGT--EEECSSS-S-HHHH----H-TTSEEEET------S
T ss_pred CCEEEECCCCHHHHHHHHhcce--EEEEcCc--cHHHHHHHhCCeEEEecCCCCCHHHH----h-hcceEEeC------C
Confidence 3787766655 466888999 9999999 566 9999999999993223322211 1 34444433 5
Q ss_pred CHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHH
Q 011381 427 GREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLA 473 (487)
Q Consensus 427 ~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 473 (487)
+.++|.+++++++.+ ..+..+.+....-. +.|.++.++++
T Consensus 304 ~~~~I~~ai~~~l~~---~~~~~~~~~~~npY----gdG~as~rI~~ 343 (346)
T PF02350_consen 304 DPEAIIQAIEKALSD---KDFYRKLKNRPNPY----GDGNASERIVE 343 (346)
T ss_dssp SHHHHHHHHHHHHH----HHHHHHHHCS--TT-----SS-HHHHHHH
T ss_pred CHHHHHHHHHHHHhC---hHHHHhhccCCCCC----CCCcHHHHHHH
Confidence 799999999999976 45555544422222 24555555444
No 94
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.02 E-value=0.00072 Score=69.93 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=60.1
Q ss_pred cccccCccccccc---ccCch-hHHHHHhhCCceecccccc--cchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHH
Q 011381 363 QVLSHGSTGGFLS---HCGWN-SILESIVHGVPIIAWPLYS--EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAK 436 (487)
Q Consensus 363 ~iL~~~~~~~~I~---HgG~g-t~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~ 436 (487)
.+++.+| +||. +-|.| +.+||+++|+|.|+-...+ |.-.+...-.. -+.|+.++.. +++++.+++.
T Consensus 352 ~~~~~aD--v~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~-~~~G~lv~~~-----d~~~la~~i~ 423 (466)
T PRK00654 352 RIYAGAD--MFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDG-EATGFVFDDF-----NAEDLLRALR 423 (466)
T ss_pred HHHhhCC--EEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCC-CCceEEeCCC-----CHHHHHHHHH
Confidence 4678888 6663 33444 7889999999999865432 21111111122 3778888764 5899999999
Q ss_pred HhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh
Q 011381 437 GLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWK 480 (487)
Q Consensus 437 ~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 480 (487)
++++....+.. .+++++.. +...-|-++..+++.+-.+
T Consensus 424 ~~l~~~~~~~~---~~~~~~~~---~~~~fsw~~~a~~~~~lY~ 461 (466)
T PRK00654 424 RALELYRQPPL---WRALQRQA---MAQDFSWDKSAEEYLELYR 461 (466)
T ss_pred HHHHHhcCHHH---HHHHHHHH---hccCCChHHHHHHHHHHHH
Confidence 98862000222 22232222 2245666666666655443
No 95
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=0.00093 Score=64.91 Aligned_cols=108 Identities=14% Similarity=0.167 Sum_probs=80.3
Q ss_pred Ccee---ccCCCcccccccCcccccccccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccCH
Q 011381 352 GLVV---PSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGR 428 (487)
Q Consensus 352 ~v~~---~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~ 428 (487)
++.+ .+|.+...++.++. +++|-.|. -.-||-..|+|.+++=...+||. ++ + .|.-+.++ .+.
T Consensus 263 ~v~li~pl~~~~f~~L~~~a~--~iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v-~-agt~~lvg------~~~ 328 (383)
T COG0381 263 RVKLIDPLGYLDFHNLMKNAF--LILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GV-E-AGTNILVG------TDE 328 (383)
T ss_pred cEEEeCCcchHHHHHHHHhce--EEEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ce-e-cCceEEeC------ccH
Confidence 4554 56778888999999 99999884 57889999999999999999998 22 2 35555554 457
Q ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh
Q 011381 429 EDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWK 480 (487)
Q Consensus 429 ~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 480 (487)
+.|.+++.+++++ +++.+|++....-.. +|.++++.++.+.....
T Consensus 329 ~~i~~~~~~ll~~---~~~~~~m~~~~npYg----dg~as~rIv~~l~~~~~ 373 (383)
T COG0381 329 ENILDAATELLED---EEFYERMSNAKNPYG----DGNASERIVEILLNYFD 373 (383)
T ss_pred HHHHHHHHHHhhC---hHHHHHHhcccCCCc----CcchHHHHHHHHHHHhh
Confidence 9999999999998 778777766555444 34466666666655443
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.97 E-value=0.014 Score=62.62 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=72.2
Q ss_pred CCceeccCCCc-ccccccCccccccc---ccC-chhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCc
Q 011381 351 VGLVVPSWAPQ-AQVLSHGSTGGFLS---HCG-WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~~~~~~pq-~~iL~~~~~~~~I~---HgG-~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.+|.+.+|.++ ..++..++ +||. +.| .+++.||+++|+|+|+.... .....+.+ -..|+.++..+
T Consensus 574 ~~V~flG~~~dv~~ll~aaD--v~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~d-g~~GlLv~~~d--- 643 (694)
T PRK15179 574 ERILFTGLSRRVGYWLTQFN--AFLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQE-GVTGLTLPADT--- 643 (694)
T ss_pred CcEEEcCCcchHHHHHHhcC--EEEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccC-CCCEEEeCCCC---
Confidence 46888888775 45788888 5553 444 56899999999999997653 34455666 45788887665
Q ss_pred cCHHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 011381 426 VGREDIANYAKGLIQGEE-GKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIW 479 (487)
Q Consensus 426 ~~~~~l~~av~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 479 (487)
.+++++.+++.+++.+.. .+.+++++++.. . +.-|.+..++++.+.+
T Consensus 644 ~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a---~----~~FS~~~~~~~~~~lY 691 (694)
T PRK15179 644 VTAPDVAEALARIHDMCAADPGIARKAADWA---S----ARFSLNQMIASTVRCY 691 (694)
T ss_pred CChHHHHHHHHHHHhChhccHHHHHHHHHHH---H----HhCCHHHHHHHHHHHh
Confidence 566677777766654311 155655544332 2 2456666666665543
No 97
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.96 E-value=0.0022 Score=63.37 Aligned_cols=107 Identities=20% Similarity=0.154 Sum_probs=66.6
Q ss_pred CCCceeccCCCcc---cccccCccccccc--ccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCC
Q 011381 350 GVGLVVPSWAPQA---QVLSHGSTGGFLS--HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENG 424 (487)
Q Consensus 350 ~~~v~~~~~~pq~---~iL~~~~~~~~I~--HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 424 (487)
..++.+.+++|+. .++..+++-++-+ -|..+++.||+++|+|+|+-...+ ....+.+ .|..+...
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~---~~~~~~~~--- 321 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD---AALYFDPL--- 321 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC---ceeeeCCC---
Confidence 4578899999876 4678888332222 233568999999999999865422 2222223 34444433
Q ss_pred ccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 011381 425 LVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQL 475 (487)
Q Consensus 425 ~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 475 (487)
+.+++.+++.++++| +..+.+..+-+....+ .-+-+...+++
T Consensus 322 --~~~~~~~~i~~l~~~---~~~~~~~~~~~~~~~~----~~sw~~~~~~~ 363 (365)
T cd03809 322 --DPEALAAAIERLLED---PALREELRERGLARAK----RFSWEKTARRT 363 (365)
T ss_pred --CHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH----hCCHHHHHHHH
Confidence 589999999999998 6666555544443332 34444444443
No 98
>PLN02846 digalactosyldiacylglycerol synthase
Probab=97.94 E-value=0.01 Score=60.49 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=51.4
Q ss_pred eeccCCCcccccccCcccccccc----cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHH
Q 011381 354 VVPSWAPQAQVLSHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGRE 429 (487)
Q Consensus 354 ~~~~~~pq~~iL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~ 429 (487)
++.++.+..+++..+| +||.= +=.+++.||+++|+|+|+.-..+ | ..+.+ -+.|...+ +.+
T Consensus 287 vf~G~~~~~~~~~~~D--vFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~-~~ng~~~~-------~~~ 351 (462)
T PLN02846 287 VYPGRDHADPLFHDYK--VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQ-FPNCRTYD-------DGK 351 (462)
T ss_pred EECCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeec-CCceEecC-------CHH
Confidence 3556666666888888 77754 44578999999999999876543 2 33444 34454441 478
Q ss_pred HHHHHHHHhccC
Q 011381 430 DIANYAKGLIQG 441 (487)
Q Consensus 430 ~l~~av~~vl~~ 441 (487)
.+.+++.++|.+
T Consensus 352 ~~a~ai~~~l~~ 363 (462)
T PLN02846 352 GFVRATLKALAE 363 (462)
T ss_pred HHHHHHHHHHcc
Confidence 999999999985
No 99
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.92 E-value=0.005 Score=63.86 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=59.0
Q ss_pred ccccccCcccccccccCchhHHHHHhhCCceeccc-ccccchhhhHhhhc-----------ccceeEEEeecC-CCccCH
Q 011381 362 AQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWP-LYSEQKMNAVLLTD-----------DLKVSFRVKVNE-NGLVGR 428 (487)
Q Consensus 362 ~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P-~~~DQ~~na~~v~~-----------~~G~G~~l~~~~-~~~~~~ 428 (487)
.++++.|+ +.+.-+|- .++|+..+|+|||++= ...=-+.-++++.+ .+|-.+....-. ...+|+
T Consensus 483 ~~~m~aaD--~aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tp 559 (608)
T PRK01021 483 YELMRECD--CALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQP 559 (608)
T ss_pred HHHHHhcC--eeeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCH
Confidence 57888999 88887875 5788999999998742 22222344555554 112222111110 012899
Q ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCCh
Q 011381 429 EDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSS 468 (487)
Q Consensus 429 ~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~ 468 (487)
+.|.+++ ++|.| ++++++.++=-+++++.+.+|-.+
T Consensus 560 e~La~~l-~lL~d---~~~r~~~~~~l~~lr~~Lg~~~~~ 595 (608)
T PRK01021 560 EEVAAAL-DILKT---SQSKEKQKDACRDLYQAMNESAST 595 (608)
T ss_pred HHHHHHH-HHhcC---HHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999997 88887 555555555444444444344433
No 100
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.82 E-value=0.015 Score=60.22 Aligned_cols=115 Identities=12% Similarity=-0.009 Sum_probs=64.4
Q ss_pred CCceeccCCCcc---cccccCcccccccc---cCc-hhHHHHHhhCCceecccccc--cchhhhHhhhcccceeEEEeec
Q 011381 351 VGLVVPSWAPQA---QVLSHGSTGGFLSH---CGW-NSILESIVHGVPIIAWPLYS--EQKMNAVLLTDDLKVSFRVKVN 421 (487)
Q Consensus 351 ~~v~~~~~~pq~---~iL~~~~~~~~I~H---gG~-gt~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~ 421 (487)
.++++....++. .+++.++ +++.- -|. .+.+||+++|+|+|+-...+ |--.+.....+ -|.|..++..
T Consensus 351 ~~v~~~~~~~~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~-~~~G~~~~~~ 427 (476)
T cd03791 351 GRVAVLIGYDEALAHLIYAGAD--FFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTG-EGTGFVFEGY 427 (476)
T ss_pred CcEEEEEeCCHHHHHHHHHhCC--EEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCC-CCCeEEeCCC
Confidence 456543323332 4677788 55532 122 37899999999999876543 21111111113 4588888764
Q ss_pred CCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 011381 422 ENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIW 479 (487)
Q Consensus 422 ~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 479 (487)
+++++.+++.+++.. ..-++...++++... ...-+-+...+++++.+
T Consensus 428 -----~~~~l~~~i~~~l~~---~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~y 474 (476)
T cd03791 428 -----NADALLAALRRALAL---YRDPEAWRKLQRNAM---AQDFSWDRSAKEYLELY 474 (476)
T ss_pred -----CHHHHHHHHHHHHHH---HcCHHHHHHHHHHHh---ccCCChHHHHHHHHHHH
Confidence 589999999998853 111222333333333 24556666666666554
No 101
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.81 E-value=0.0089 Score=61.99 Aligned_cols=110 Identities=17% Similarity=0.065 Sum_probs=66.7
Q ss_pred CCceeccCCCcc---cccccCccccccc---ccCch-hHHHHHhhCCceecccccccchhhhHhhhc-----ccceeEEE
Q 011381 351 VGLVVPSWAPQA---QVLSHGSTGGFLS---HCGWN-SILESIVHGVPIIAWPLYSEQKMNAVLLTD-----DLKVSFRV 418 (487)
Q Consensus 351 ~~v~~~~~~pq~---~iL~~~~~~~~I~---HgG~g-t~~eal~~GvP~v~~P~~~DQ~~na~~v~~-----~~G~G~~l 418 (487)
.++.+....+.. .+++.++ ++|. +-|.| +.+||+++|+|.|+-...+ ....+.+ .-+.|+.+
T Consensus 346 ~~v~~~~~~~~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l~ 419 (473)
T TIGR02095 346 GNVRVIIGYDEALAHLIYAGAD--FILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFLF 419 (473)
T ss_pred CcEEEEEcCCHHHHHHHHHhCC--EEEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEEe
Confidence 345554444543 4678888 5553 22444 7889999999998866543 2223333 02778887
Q ss_pred eecCCCccCHHHHHHHHHHhcc----CchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh
Q 011381 419 KVNENGLVGREDIANYAKGLIQ----GEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWK 480 (487)
Q Consensus 419 ~~~~~~~~~~~~l~~av~~vl~----~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 480 (487)
+.. +++++.++|.+++. + +..+ +++++.. +...-|-++..+++.+..+
T Consensus 420 ~~~-----d~~~la~~i~~~l~~~~~~---~~~~---~~~~~~~---~~~~fsw~~~a~~~~~~Y~ 471 (473)
T TIGR02095 420 EEY-----DPGALLAALSRALRLYRQD---PSLW---EALQKNA---MSQDFSWDKSAKQYVELYR 471 (473)
T ss_pred CCC-----CHHHHHHHHHHHHHHHhcC---HHHH---HHHHHHH---hccCCCcHHHHHHHHHHHH
Confidence 654 58899999999886 4 3322 2232222 2246677777777766544
No 102
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.78 E-value=0.052 Score=54.28 Aligned_cols=110 Identities=19% Similarity=0.139 Sum_probs=68.2
Q ss_pred CCceeccCC--Cc---ccccccCcccccccc----cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeec
Q 011381 351 VGLVVPSWA--PQ---AQVLSHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVN 421 (487)
Q Consensus 351 ~~v~~~~~~--pq---~~iL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 421 (487)
.++.+.++. ++ ..+++.++ +|+.- |-..++.||+++|+|+|+-... .....+.. -..|+.++
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad--~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~-~~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRAST--VVLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIED-GETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCe--EEEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhccc-CCceEEeC--
Confidence 356676765 33 24677888 77643 2245899999999999986543 23344555 45676553
Q ss_pred CCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh
Q 011381 422 ENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWK 480 (487)
Q Consensus 422 ~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 480 (487)
+.+.+..++.+++++ ++.++...+-+.... .+.-+.+..++++++.++
T Consensus 323 -----~~~~~a~~i~~ll~~---~~~~~~~~~~a~~~~---~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 323 -----TVEEAAVRILYLLRD---PELRRKMGANAREHV---RENFLITRHLKDYLYLIS 370 (372)
T ss_pred -----CcHHHHHHHHHHHcC---HHHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHHH
Confidence 245777899999988 555544333332221 135566677777766554
No 103
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.77 E-value=0.0049 Score=62.81 Aligned_cols=77 Identities=18% Similarity=0.100 Sum_probs=53.4
Q ss_pred CCceeccCCCcc---cccccCccccccc-----ccCchhHHHHHhhCCceecccccccchhhhHhhh---cccceeEEEe
Q 011381 351 VGLVVPSWAPQA---QVLSHGSTGGFLS-----HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLT---DDLKVSFRVK 419 (487)
Q Consensus 351 ~~v~~~~~~pq~---~iL~~~~~~~~I~-----HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~---~~~G~G~~l~ 419 (487)
.+|.+.+++|+. .+|..++ ++|+ |-| -++.||+++|+|+|+.-..+. ....++ . -..|....
T Consensus 305 ~~V~f~g~v~~~~l~~~l~~ad--v~v~~s~~E~Fg-i~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~-g~~G~l~~ 377 (419)
T cd03806 305 DKVEFVVNAPFEELLEELSTAS--IGLHTMWNEHFG-IGVVEYMAAGLIPLAHASGGP---LLDIVVPWDG-GPTGFLAS 377 (419)
T ss_pred CeEEEecCCCHHHHHHHHHhCe--EEEECCccCCcc-cHHHHHHHcCCcEEEEcCCCC---chheeeccCC-CCceEEeC
Confidence 478888999875 4777788 5443 333 378999999999998654331 112233 3 35676541
Q ss_pred ecCCCccCHHHHHHHHHHhccC
Q 011381 420 VNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 420 ~~~~~~~~~~~l~~av~~vl~~ 441 (487)
+++++.+++.+++++
T Consensus 378 -------d~~~la~ai~~ll~~ 392 (419)
T cd03806 378 -------TAEEYAEAIEKILSL 392 (419)
T ss_pred -------CHHHHHHHHHHHHhC
Confidence 589999999999986
No 104
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.75 E-value=0.0064 Score=61.57 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=49.6
Q ss_pred ccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHH
Q 011381 376 HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALK 455 (487)
Q Consensus 376 HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~ 455 (487)
-|--.++.||+++|+|+|+....+ ... +.. -+.|..++..+ .+.++++++..+.+ ..+.+...+.+
T Consensus 317 Egfp~vilEAmA~G~PVVat~~gG----~~E-iv~-~~~G~lv~~~d-----~~~La~~~~~~~~~---~~~~~~~~~~r 382 (405)
T PRK10125 317 DNYPLILCEALSIGVPVIATHSDA----ARE-VLQ-KSGGKTVSEEE-----VLQLAQLSKPEIAQ---AVFGTTLAEFS 382 (405)
T ss_pred ccCcCHHHHHHHcCCCEEEeCCCC----hHH-hEe-CCcEEEECCCC-----HHHHHhccCHHHHH---HhhhhHHHHHH
Confidence 355668999999999999988765 222 233 35788887654 77777653322211 11111112223
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHh
Q 011381 456 DAAANALSPDGSSTKSLAQLARIWK 480 (487)
Q Consensus 456 ~~~~~~~~~~g~~~~~~~~~~~~l~ 480 (487)
++.. ..-+.+..+++.++..+
T Consensus 383 ~~~~----~~fs~~~~~~~y~~lY~ 403 (405)
T PRK10125 383 QRSR----AAYSGQQMLEEYVNFYQ 403 (405)
T ss_pred HHHH----HhCCHHHHHHHHHHHHH
Confidence 3333 34566667776666543
No 105
>PLN02949 transferase, transferring glycosyl groups
Probab=97.70 E-value=0.085 Score=54.34 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=50.8
Q ss_pred CCceeccCCCccc---ccccCccccccc---ccCch-hHHHHHhhCCceecccccccchhhhHhhhcc-cc-eeEEEeec
Q 011381 351 VGLVVPSWAPQAQ---VLSHGSTGGFLS---HCGWN-SILESIVHGVPIIAWPLYSEQKMNAVLLTDD-LK-VSFRVKVN 421 (487)
Q Consensus 351 ~~v~~~~~~pq~~---iL~~~~~~~~I~---HgG~g-t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~-~G-~G~~l~~~ 421 (487)
.+|.+.+++|+.+ +|..++ ++|+ +-|.| ++.||+++|+|+|+....+-- ...+... -| .|...
T Consensus 335 ~~V~f~g~v~~~el~~ll~~a~--~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~--- 406 (463)
T PLN02949 335 GDVEFHKNVSYRDLVRLLGGAV--AGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA--- 406 (463)
T ss_pred CcEEEeCCCCHHHHHHHHHhCc--EEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC---
Confidence 4688889998654 677788 6652 23333 799999999999998754310 0111110 01 23322
Q ss_pred CCCccCHHHHHHHHHHhccC
Q 011381 422 ENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 422 ~~~~~~~~~l~~av~~vl~~ 441 (487)
-+.+++.+++.+++++
T Consensus 407 ----~~~~~la~ai~~ll~~ 422 (463)
T PLN02949 407 ----TTVEEYADAILEVLRM 422 (463)
T ss_pred ----CCHHHHHHHHHHHHhC
Confidence 1588999999999984
No 106
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.70 E-value=0.005 Score=60.89 Aligned_cols=104 Identities=23% Similarity=0.230 Sum_probs=66.6
Q ss_pred CcccccccCcccccccccCchhHHHHHhhCCceeccc-ccccchhhhHhhhcccce-eEE--EeecC------CCccCHH
Q 011381 360 PQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWP-LYSEQKMNAVLLTDDLKV-SFR--VKVNE------NGLVGRE 429 (487)
Q Consensus 360 pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~-G~~--l~~~~------~~~~~~~ 429 (487)
.-.++|..++ +.+.-.|- .++|+..+|+|||++= ...=-++.|+++.+ ... |+. +-.++ -+..|++
T Consensus 253 ~~~~~m~~ad--~al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~isL~Niia~~~v~PEliQ~~~~~~ 328 (373)
T PF02684_consen 253 ESYDAMAAAD--AALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVK-VKYISLPNIIAGREVVPELIQEDATPE 328 (373)
T ss_pred chHHHHHhCc--chhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CCEeechhhhcCCCcchhhhcccCCHH
Confidence 3455788888 77776664 5789999999997753 33334556777765 332 210 11010 1237999
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHH
Q 011381 430 DIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTK 470 (487)
Q Consensus 430 ~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 470 (487)
.|.+++.++|.| +..++..+...+.+++..+.+.++..
T Consensus 329 ~i~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (373)
T PF02684_consen 329 NIAAELLELLEN---PEKRKKQKELFREIRQLLGPGASSRA 366 (373)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHHHHHhhhhccCCHH
Confidence 999999999998 55566666666666665545555444
No 107
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.64 E-value=0.065 Score=52.26 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=66.4
Q ss_pred ccccCcccccccccCchhHHHHHhhCCceecccc-cccchhhhHhhhccccee-E-------E----EeecCCCccCHHH
Q 011381 364 VLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPL-YSEQKMNAVLLTDDLKVS-F-------R----VKVNENGLVGRED 430 (487)
Q Consensus 364 iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~-~~DQ~~na~~v~~~~G~G-~-------~----l~~~~~~~~~~~~ 430 (487)
++..|| +.+.-+|-. ++|+..+|+|||+.== ..==++-+++..+ .... + . +--++ ++++.
T Consensus 261 a~~~aD--~al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk-~~yisLpNIi~~~~ivPEliq~~---~~pe~ 333 (381)
T COG0763 261 AFAAAD--AALAASGTA-TLEAALAGTPMVVAYKVKPITYFIAKRLVK-LPYVSLPNILAGREIVPELIQED---CTPEN 333 (381)
T ss_pred HHHHhh--HHHHhccHH-HHHHHHhCCCEEEEEeccHHHHHHHHHhcc-CCcccchHHhcCCccchHHHhhh---cCHHH
Confidence 567788 778877754 6789999999987421 1111334555555 3221 1 0 00122 78999
Q ss_pred HHHHHHHhccCch-hHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh
Q 011381 431 IANYAKGLIQGEE-GKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWK 480 (487)
Q Consensus 431 l~~av~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 480 (487)
|.+++.+++.|+. -+.+.+.-.++...++ ++++.+.+.+.+++.+.
T Consensus 334 la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 334 LARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLELLL 380 (381)
T ss_pred HHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhc
Confidence 9999999999842 1345555555555555 57788888777776654
No 108
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.62 E-value=0.00064 Score=69.02 Aligned_cols=111 Identities=11% Similarity=0.167 Sum_probs=72.7
Q ss_pred CCceeccCCCccc---ccccCccccccccc----CchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCC
Q 011381 351 VGLVVPSWAPQAQ---VLSHGSTGGFLSHC----GWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 423 (487)
Q Consensus 351 ~~v~~~~~~pq~~---iL~~~~~~~~I~Hg----G~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
.+|.+.+|+++.+ ++..+++.+||... -.++++||+++|+|+|+-.. ......+.+ -+.|..+...
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~-~~~G~l~~~~-- 361 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDN-GGNGLLLSKD-- 361 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcC-CCcEEEeCCC--
Confidence 4688899999764 44443333666443 24689999999999998553 345566666 4588877654
Q ss_pred CccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 011381 424 GLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLA 476 (487)
Q Consensus 424 ~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 476 (487)
-+.+++.++|.++++| +..+++ +++..++.+.++-+.+...++++
T Consensus 362 --~~~~~la~~I~~ll~~---~~~~~~---m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 362 --PTPNELVSSLSKFIDN---EEEYQT---MREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred --CCHHHHHHHHHHHHhC---HHHHHH---HHHHHHHHHHHHcCHHHhHHHhc
Confidence 3689999999999987 443332 33333333334566666665554
No 109
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.53 E-value=0.0026 Score=64.56 Aligned_cols=113 Identities=17% Similarity=0.193 Sum_probs=75.7
Q ss_pred CCceeccCCCccc---ccccCccccccc--c-------cCc-hhHHHHHhhCCceecccccccchhhhHhhhcccceeEE
Q 011381 351 VGLVVPSWAPQAQ---VLSHGSTGGFLS--H-------CGW-NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFR 417 (487)
Q Consensus 351 ~~v~~~~~~pq~~---iL~~~~~~~~I~--H-------gG~-gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~ 417 (487)
.+|.+.+|+|+.+ ++..++ +||. . -|. +++.||+++|+|+|+-...+ ....+++ -..|..
T Consensus 279 ~~V~~~G~~~~~el~~~l~~aD--v~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~-~~~G~l 351 (406)
T PRK15427 279 DVVEMPGFKPSHEVKAMLDDAD--VFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEA-DKSGWL 351 (406)
T ss_pred CeEEEeCCCCHHHHHHHHHhCC--EEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcC-CCceEE
Confidence 4688999999854 677888 6654 2 244 57899999999999875533 3445555 457877
Q ss_pred EeecCCCccCHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhc
Q 011381 418 VKVNENGLVGREDIANYAKGLIQ-GEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWKN 481 (487)
Q Consensus 418 l~~~~~~~~~~~~l~~av~~vl~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 481 (487)
++.. +.+++.++|.++++ | ++.+++. ++..++.+.+.-+.+...+++.+.+++
T Consensus 352 v~~~-----d~~~la~ai~~l~~~d---~~~~~~~---~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 352 VPEN-----DAQALAQRLAAFSQLD---TDELAPV---VKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred eCCC-----CHHHHHHHHHHHHhCC---HHHHHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 7654 58999999999998 7 4433222 222222222456777777777776654
No 110
>PLN02316 synthase/transferase
Probab=97.50 E-value=0.098 Score=58.21 Aligned_cols=115 Identities=7% Similarity=-0.058 Sum_probs=69.6
Q ss_pred CceeccCCCcc---cccccCccccccc----ccCchhHHHHHhhCCceecccccc--cchhh-------hHhhhccccee
Q 011381 352 GLVVPSWAPQA---QVLSHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYS--EQKMN-------AVLLTDDLKVS 415 (487)
Q Consensus 352 ~v~~~~~~pq~---~iL~~~~~~~~I~----HgG~gt~~eal~~GvP~v~~P~~~--DQ~~n-------a~~v~~~~G~G 415 (487)
+|.+....+.. .+++.+| +|+. -+=..+.+||+++|+|.|+-...+ |.-.. +..... -+.|
T Consensus 901 rV~f~g~~de~lah~iyaaAD--iflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~-~~tG 977 (1036)
T PLN02316 901 RARLCLTYDEPLSHLIYAGAD--FILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGL-EPNG 977 (1036)
T ss_pred eEEEEecCCHHHHHHHHHhCc--EEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhcccccccccccccccc-CCce
Confidence 45544444442 5778888 7773 222348999999999988866543 22111 110111 2467
Q ss_pred EEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 011381 416 FRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIW 479 (487)
Q Consensus 416 ~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 479 (487)
+.++.. +++.|..+|.++|.. |......+++..++.+..+-|-...+++.++-.
T Consensus 978 flf~~~-----d~~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY 1031 (1036)
T PLN02316 978 FSFDGA-----DAAGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELY 1031 (1036)
T ss_pred EEeCCC-----CHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 777754 588999999999964 444445555555555555666666666655543
No 111
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.48 E-value=0.00064 Score=67.42 Aligned_cols=127 Identities=12% Similarity=0.129 Sum_probs=83.9
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCc
Q 011381 282 LFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQ 361 (487)
Q Consensus 282 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq 361 (487)
.++..|+.. ..+....+++++++.+.++++ +|.... .+.+.+ ....||.+.+++|+
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~i-vG~g~~--------------------~~~l~~-~~~~~V~~~g~~~~ 252 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVV-IGDGPE--------------------LDRLRA-KAGPNVTFLGRVSD 252 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEE-EECChh--------------------HHHHHh-hcCCCEEEecCCCH
Confidence 344556653 345577788888888866444 443221 011211 23468999999998
Q ss_pred c---cccccCcccccccccCc-hhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHH
Q 011381 362 A---QVLSHGSTGGFLSHCGW-NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKG 437 (487)
Q Consensus 362 ~---~iL~~~~~~~~I~HgG~-gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~ 437 (487)
. .+++.+++-++-+.-|. .++.||+++|+|+|+....+ ....+++ -+.|..++.. +.+.+.++|.+
T Consensus 253 ~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~-~~~G~~~~~~-----~~~~la~~i~~ 322 (351)
T cd03804 253 EELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVID-GVTGILFEEQ-----TVESLAAAVER 322 (351)
T ss_pred HHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeC-CCCEEEeCCC-----CHHHHHHHHHH
Confidence 4 46888994333334444 35789999999999976533 4444556 5688888754 58889999999
Q ss_pred hccCc
Q 011381 438 LIQGE 442 (487)
Q Consensus 438 vl~~~ 442 (487)
++++.
T Consensus 323 l~~~~ 327 (351)
T cd03804 323 FEKNE 327 (351)
T ss_pred HHhCc
Confidence 99884
No 112
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.39 E-value=0.033 Score=58.72 Aligned_cols=76 Identities=14% Similarity=0.084 Sum_probs=52.0
Q ss_pred CceeccCCCcc-cccccCccccccc----ccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCcc
Q 011381 352 GLVVPSWAPQA-QVLSHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLV 426 (487)
Q Consensus 352 ~v~~~~~~pq~-~iL~~~~~~~~I~----HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 426 (487)
++.+.++.++. .+++.++ +||. -|=..++.||+++|+|+|+.-..+... +.. -+.|. +. -
T Consensus 602 ~V~FLG~~dd~~~lyasaD--VFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~-g~nGl-l~------~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYK--VFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS-FPNCL-TY------K 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee-cCCeE-ec------C
Confidence 35666777764 4788888 6654 333568999999999999987765321 223 23333 22 2
Q ss_pred CHHHHHHHHHHhccCc
Q 011381 427 GREDIANYAKGLIQGE 442 (487)
Q Consensus 427 ~~~~l~~av~~vl~~~ 442 (487)
+.+.+.++|.++|.++
T Consensus 667 D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 667 TSEDFVAKVKEALANE 682 (794)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 5899999999999873
No 113
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.33 E-value=0.01 Score=59.58 Aligned_cols=113 Identities=10% Similarity=0.038 Sum_probs=75.3
Q ss_pred CCceeccCCCccc---ccccCcccccccc----cCc-hhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecC
Q 011381 351 VGLVVPSWAPQAQ---VLSHGSTGGFLSH----CGW-NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE 422 (487)
Q Consensus 351 ~~v~~~~~~pq~~---iL~~~~~~~~I~H----gG~-gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 422 (487)
.++.+.+++|+.+ +++.++ ++|.- .|. .++.||+++|+|+|+.... .+...+++ -..|..+...
T Consensus 257 ~~v~~~G~~~~~~l~~~~~~aD--v~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~-~~~G~~l~~~- 328 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYYPLAD--LVVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLE-GITGYHLAEP- 328 (380)
T ss_pred CcEEEeCCCCHHHHHHHHHhCC--EEEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhccc-CCceEEEeCC-
Confidence 4678889998644 588899 65542 343 5778999999999997653 34455556 5677755332
Q ss_pred CCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhc
Q 011381 423 NGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWKN 481 (487)
Q Consensus 423 ~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 481 (487)
.+++++.++|.++++| +..++..++-++... +.-+-+...+++.+.+++
T Consensus 329 ---~d~~~la~~I~~ll~d---~~~~~~~~~ar~~~~----~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 329 ---MTSDSIISDINRTLAD---PELTQIAEQAKDFVF----SKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred ---CCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHH
Confidence 3699999999999998 554333333222222 456777777777776654
No 114
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.32 E-value=0.00066 Score=59.69 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=60.3
Q ss_pred CCceeccCCCc---ccccccCcccccccc----cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCC
Q 011381 351 VGLVVPSWAPQ---AQVLSHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 423 (487)
Q Consensus 351 ~~v~~~~~~pq---~~iL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
.++.+.++.++ ..++..++ ++|+. |...++.||+++|+|+|+ .|...+...+.. .+.|..++..
T Consensus 73 ~~i~~~~~~~~~~l~~~~~~~d--i~v~~s~~e~~~~~~~Ea~~~g~pvI~----~~~~~~~e~~~~-~~~g~~~~~~-- 143 (172)
T PF00534_consen 73 ENIIFLGYVPDDELDELYKSSD--IFVSPSRNEGFGLSLLEAMACGCPVIA----SDIGGNNEIIND-GVNGFLFDPN-- 143 (172)
T ss_dssp TTEEEEESHSHHHHHHHHHHTS--EEEE-BSSBSS-HHHHHHHHTT-EEEE----ESSTHHHHHSGT-TTSEEEESTT--
T ss_pred ccccccccccccccccccccce--eccccccccccccccccccccccceee----ccccCCceeecc-ccceEEeCCC--
Confidence 46778888872 55778888 77765 667799999999999987 445666677777 6778888764
Q ss_pred CccCHHHHHHHHHHhccC
Q 011381 424 GLVGREDIANYAKGLIQG 441 (487)
Q Consensus 424 ~~~~~~~l~~av~~vl~~ 441 (487)
+.+++.++|.+++.+
T Consensus 144 ---~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 144 ---DIEELADAIEKLLND 158 (172)
T ss_dssp ---SHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHCC
Confidence 699999999999987
No 115
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.24 E-value=0.002 Score=65.04 Aligned_cols=152 Identities=20% Similarity=0.266 Sum_probs=81.0
Q ss_pred CCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhh-----cCC
Q 011381 277 PSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRT-----KGV 351 (487)
Q Consensus 277 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~ 351 (487)
++..++|.+|....-.+++.+....+-|++.+.-.+|....... -...+..+. ...
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~-------------------~~~~l~~~~~~~Gv~~~ 342 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS-------------------GEARLRRRFAAHGVDPD 342 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT-------------------HHHHHHHHHHHTTS-GG
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH-------------------HHHHHHHHHHHcCCChh
Confidence 34569999999988889999999999999999999998775432 001222211 223
Q ss_pred CceeccCCCccccc---ccCcccccc---cccCchhHHHHHhhCCceecccccc-cchhhhHhhhcccceeEEEeecCCC
Q 011381 352 GLVVPSWAPQAQVL---SHGSTGGFL---SHCGWNSILESIVHGVPIIAWPLYS-EQKMNAVLLTDDLKVSFRVKVNENG 424 (487)
Q Consensus 352 ~v~~~~~~pq~~iL---~~~~~~~~I---~HgG~gt~~eal~~GvP~v~~P~~~-DQ~~na~~v~~~~G~G~~l~~~~~~ 424 (487)
.+++.++.|+.+-| ..+| +++ ..+|.+|++|||+.|||+|.+|--. =...-+..+.. +|+.-.+-
T Consensus 343 Ri~f~~~~~~~ehl~~~~~~D--I~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA----- 414 (468)
T PF13844_consen 343 RIIFSPVAPREEHLRRYQLAD--ICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIA----- 414 (468)
T ss_dssp GEEEEE---HHHHHHHGGG-S--EEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB------
T ss_pred hEEEcCCCCHHHHHHHhhhCC--EEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcC-----
Confidence 56677777765433 4455 443 4578899999999999999999432 22333455556 67763332
Q ss_pred ccCHHHHHHHHHHhccCchhHHHHHHH-HHHHHHHH
Q 011381 425 LVGREDIANYAKGLIQGEEGKLLRKKM-RALKDAAA 459 (487)
Q Consensus 425 ~~~~~~l~~av~~vl~~~~~~~~~~~a-~~l~~~~~ 459 (487)
.+.++-.+..-++-+| +.++++. ++|++++.
T Consensus 415 -~s~~eYv~~Av~La~D---~~~l~~lR~~Lr~~~~ 446 (468)
T PF13844_consen 415 -DSEEEYVEIAVRLATD---PERLRALRAKLRDRRS 446 (468)
T ss_dssp -SSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHh
Confidence 2455544444456666 4444333 23444443
No 116
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.0025 Score=51.90 Aligned_cols=111 Identities=19% Similarity=0.144 Sum_probs=69.5
Q ss_pred EEEEeCCCcCCCHHHHH--HHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCc-hhHHHhhcCCCceeccC
Q 011381 282 LFVCFGSGGTLSQEQLN--ELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLP-KGFLDRTKGVGLVVPSW 358 (487)
Q Consensus 282 v~vs~Gs~~~~~~~~~~--~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp-~~~~~~~~~~~v~~~~~ 358 (487)
+|||-||.-..-...+. +..+-.+....++|..+|.+.. .| .|+ .++-.++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~-------------------kpvagl-------~v~~F~~ 55 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI-------------------KPVAGL-------RVYGFDK 55 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc-------------------cccccc-------EEEeech
Confidence 78999986211111111 1222223334578888887543 22 211 2333344
Q ss_pred CCc-ccccccCcccccccccCchhHHHHHhhCCceecccccc--------cchhhhHhhhcccceeEEEeec
Q 011381 359 APQ-AQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYS--------EQKMNAVLLTDDLKVSFRVKVN 421 (487)
Q Consensus 359 ~pq-~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~--------DQ~~na~~v~~~~G~G~~l~~~ 421 (487)
.+- ..+-..++ ++|+|+|.||++.++..++|.|++|-.. .|-.-|..+.+ .+.=......
T Consensus 56 ~~kiQsli~dar--IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~spt 124 (161)
T COG5017 56 EEKIQSLIHDAR--IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSPT 124 (161)
T ss_pred HHHHHHHhhcce--EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcCC
Confidence 443 33444566 9999999999999999999999999643 47777888888 7776666543
No 117
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=97.17 E-value=0.00052 Score=53.80 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=50.6
Q ss_pred ccchhhcccCCCCCeEEEEEeCCCcCC---CH--HHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCC
Q 011381 266 SLECLKWLDEQPSESVLFVCFGSGGTL---SQ--EQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFL 340 (487)
Q Consensus 266 ~~~~~~~l~~~~~~~~v~vs~Gs~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 340 (487)
...+..|+.+.+.+|.|+||+||.... .. ..+..++++++.++..+|.++..... +.++.+
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~--------------~~lg~l 92 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQR--------------AELGEL 92 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCC--------------GGCCS-
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHH--------------HhhCCC
Confidence 567778999999999999999997433 22 47888999999999999999987654 456777
Q ss_pred ch
Q 011381 341 PK 342 (487)
Q Consensus 341 p~ 342 (487)
|+
T Consensus 93 P~ 94 (97)
T PF06722_consen 93 PD 94 (97)
T ss_dssp TT
T ss_pred CC
Confidence 77
No 118
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.03 E-value=0.078 Score=55.19 Aligned_cols=98 Identities=12% Similarity=0.145 Sum_probs=62.9
Q ss_pred CCceeccCCCcccccccCccccccc---ccC-chhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeec--CCC
Q 011381 351 VGLVVPSWAPQAQVLSHGSTGGFLS---HCG-WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVN--ENG 424 (487)
Q Consensus 351 ~~v~~~~~~pq~~iL~~~~~~~~I~---HgG-~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~--~~~ 424 (487)
.+|...++.+...++..++ ++|. .-| ..++.||+++|+|+|+.-.. ..+...++. -..|..++.. .+.
T Consensus 376 ~~V~f~G~~~~~~~~~~ad--v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~-g~nG~lv~~~~~~~d 449 (500)
T TIGR02918 376 DYIHLKGHRNLSEVYKDYE--LYLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIED-NKNGYLIPIDEEEDD 449 (500)
T ss_pred CeEEEcCCCCHHHHHHhCC--EEEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccC-CCCEEEEeCCccccc
Confidence 4577888888788888888 5664 233 45899999999999986543 123445555 4567777632 100
Q ss_pred ccC-HHHHHHHHHHhccCchhHHHHHHHHHH
Q 011381 425 LVG-REDIANYAKGLIQGEEGKLLRKKMRAL 454 (487)
Q Consensus 425 ~~~-~~~l~~av~~vl~~~~~~~~~~~a~~l 454 (487)
.-+ .+.++++|.++++++.-..+.+++.+.
T Consensus 450 ~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~ 480 (500)
T TIGR02918 450 EDQIITALAEKIVEYFNSNDIDAFHEYSYQI 480 (500)
T ss_pred hhHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 012 788999999999642223444455443
No 119
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.01 E-value=0.0045 Score=61.86 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=64.4
Q ss_pred CCceeccCCCc-ccccccCcccccccc--cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccC
Q 011381 351 VGLVVPSWAPQ-AQVLSHGSTGGFLSH--CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVG 427 (487)
Q Consensus 351 ~~v~~~~~~pq-~~iL~~~~~~~~I~H--gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 427 (487)
.++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+.. -..|..++.. +
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~-~~~G~lv~~~-----d 331 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIED-GENGYLVPKG-----D 331 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHccc-CCCceEeCCC-----c
Confidence 35777777665 457888885455554 33558999999999999865431 23444555 5778877754 5
Q ss_pred HHHHHHHHHHhccCch-hHHHHHHHHHH
Q 011381 428 REDIANYAKGLIQGEE-GKLLRKKMRAL 454 (487)
Q Consensus 428 ~~~l~~av~~vl~~~~-~~~~~~~a~~l 454 (487)
.+++.++|.+++++.+ ...+.+++++.
T Consensus 332 ~~~la~~i~~ll~~~~~~~~~~~~a~~~ 359 (372)
T cd04949 332 IEALAEAIIELLNDPKLLQKFSEAAYEN 359 (372)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 8999999999999832 23344444444
No 120
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.84 E-value=0.076 Score=48.19 Aligned_cols=48 Identities=19% Similarity=0.181 Sum_probs=33.3
Q ss_pred CceeccCCCc----ccccccCcccccccccC----chhHHHHHhhCCceecccccccc
Q 011381 352 GLVVPSWAPQ----AQVLSHGSTGGFLSHCG----WNSILESIVHGVPIIAWPLYSEQ 401 (487)
Q Consensus 352 ~v~~~~~~pq----~~iL~~~~~~~~I~HgG----~gt~~eal~~GvP~v~~P~~~DQ 401 (487)
|+.+.+++++ ..++..++ ++|+-.. .+++.||+.+|+|+|+-+..+.+
T Consensus 162 ~v~~~~~~~~~~~~~~~~~~~d--i~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 162 RVIFLGGLDPEELLALLLAAAD--VFVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred cEEEeCCCCcHHHHHHHhhcCC--EEEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 5666666532 22444477 6666554 68999999999999998876543
No 121
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.63 E-value=0.0081 Score=59.17 Aligned_cols=110 Identities=15% Similarity=0.268 Sum_probs=77.5
Q ss_pred CCceeccCCCccccc---ccCccccccccc-------Cc------hhHHHHHhhCCceecccccccchhhhHhhhcccce
Q 011381 351 VGLVVPSWAPQAQVL---SHGSTGGFLSHC-------GW------NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKV 414 (487)
Q Consensus 351 ~~v~~~~~~pq~~iL---~~~~~~~~I~Hg-------G~------gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~ 414 (487)
.||.+.+|+|+.++. .. +.+++...- .. +-+.+.|++|+|+|+. ++...+..|++ .++
T Consensus 207 ~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~-~~~ 280 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVE-NGL 280 (333)
T ss_pred CCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHh-CCc
Confidence 479999999987653 33 333332211 11 1277889999999985 55678888888 899
Q ss_pred eEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 011381 415 SFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARI 478 (487)
Q Consensus 415 G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 478 (487)
|+.++ +.+++.+++.++. +++-..+++|++++++.+++ |.-...++++++..
T Consensus 281 G~~v~-------~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~~ 332 (333)
T PRK09814 281 GFVVD-------SLEELPEIIDNIT-EEEYQEMVENVKKISKLLRN----GYFTKKALVDAIKE 332 (333)
T ss_pred eEEeC-------CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHhc
Confidence 99986 2568888888753 33345789999999999994 55556666666543
No 122
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.61 E-value=0.0033 Score=52.69 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=49.4
Q ss_pred CCceeccCCCc-ccccccCcccccccc---cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCcc
Q 011381 351 VGLVVPSWAPQ-AQVLSHGSTGGFLSH---CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLV 426 (487)
Q Consensus 351 ~~v~~~~~~pq-~~iL~~~~~~~~I~H---gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 426 (487)
.+|.+.+|++. .++++.+++.+..+. |--+++.|++.+|+|+|+.+.. ....++. .+.|..+ . -
T Consensus 53 ~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~-~~~~~~~-~-----~ 120 (135)
T PF13692_consen 53 PNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEE-DGCGVLV-A-----N 120 (135)
T ss_dssp CTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--T-----T
T ss_pred CCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheee-cCCeEEE-C-----C
Confidence 48889899864 557888997776553 2348999999999999997761 2233344 5777766 2 3
Q ss_pred CHHHHHHHHHHhccC
Q 011381 427 GREDIANYAKGLIQG 441 (487)
Q Consensus 427 ~~~~l~~av~~vl~~ 441 (487)
+++++.+++.++++|
T Consensus 121 ~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 121 DPEELAEAIERLLND 135 (135)
T ss_dssp -HHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhcC
Confidence 799999999998864
No 123
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.45 E-value=0.11 Score=53.98 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=58.8
Q ss_pred CCceeccCCCcccccccCcccccccc----cCchhHHHHHhhCCceecccccccchhhhHhhhccc-----c-eeEEEee
Q 011381 351 VGLVVPSWAPQAQVLSHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDL-----K-VSFRVKV 420 (487)
Q Consensus 351 ~~v~~~~~~pq~~iL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~-----G-~G~~l~~ 420 (487)
.+|.+.+...-..+++.++ ++|.- |--+++.||+++|+|+|+-.. ......+.+ . | .|..++.
T Consensus 354 ~~V~f~G~~~v~~~l~~aD--v~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~-~~~~~~g~~G~lv~~ 426 (475)
T cd03813 354 DNVKFTGFQNVKEYLPKLD--VLVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEG-ADDEALGPAGEVVPP 426 (475)
T ss_pred CeEEEcCCccHHHHHHhCC--EEEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcC-CcccccCCceEEECC
Confidence 4777777555567788888 55432 345689999999999998543 333333333 2 2 6777765
Q ss_pred cCCCccCHHHHHHHHHHhccCchhHHHHHH
Q 011381 421 NENGLVGREDIANYAKGLIQGEEGKLLRKK 450 (487)
Q Consensus 421 ~~~~~~~~~~l~~av~~vl~~~~~~~~~~~ 450 (487)
. +.+++.+++.++++| +..+++
T Consensus 427 ~-----d~~~la~ai~~ll~~---~~~~~~ 448 (475)
T cd03813 427 A-----DPEALARAILRLLKD---PELRRA 448 (475)
T ss_pred C-----CHHHHHHHHHHHhcC---HHHHHH
Confidence 4 589999999999998 544443
No 124
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.24 E-value=1 Score=42.74 Aligned_cols=107 Identities=11% Similarity=0.095 Sum_probs=68.0
Q ss_pred CCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCcchHHHHHHHH
Q 011381 20 PGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDFQIETRITLTL 99 (487)
Q Consensus 20 ~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
+..-|+.=+-.|-+.|.++ ||+|.+-+-+.. ...++...++ +.+..+..... ......+....
T Consensus 8 ~n~~hvhfFk~lI~elekk-G~ev~iT~rd~~--------~v~~LLd~yg--f~~~~Igk~g~------~tl~~Kl~~~~ 70 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKK-GHEVLITCRDFG--------VVTELLDLYG--FPYKSIGKHGG------VTLKEKLLESA 70 (346)
T ss_pred CCcchhhHHHHHHHHHHhC-CeEEEEEEeecC--------cHHHHHHHhC--CCeEeecccCC------ccHHHHHHHHH
Confidence 4556888899999999765 999987765544 4566666654 66666553211 11111121111
Q ss_pred HHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEEecch
Q 011381 100 VRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVFFTTT 149 (487)
Q Consensus 100 ~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~ 149 (487)
... -.|-+++.+.+||+.+. -+...++.+|.-+|+|.+++.-..
T Consensus 71 ----eR~-~~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 71 ----ERV-YKLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred ----HHH-HHHHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 111 22233444569999999 557778889999999999987553
No 125
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.18 E-value=0.095 Score=52.48 Aligned_cols=109 Identities=12% Similarity=0.062 Sum_probs=66.2
Q ss_pred CCCceeccCCCccc---ccccCcccccc------cccCc-hhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEe
Q 011381 350 GVGLVVPSWAPQAQ---VLSHGSTGGFL------SHCGW-NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVK 419 (487)
Q Consensus 350 ~~~v~~~~~~pq~~---iL~~~~~~~~I------~HgG~-gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 419 (487)
..||.+.+++|+.+ ++.++++.++- +.++. +.+.|++++|+|+|..++ ...++. .+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~-~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY-ED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh-cC-cEEEe
Confidence 35899999998655 57778854442 23332 458999999999998763 122233 33 33332
Q ss_pred ecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhc
Q 011381 420 VNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWKN 481 (487)
Q Consensus 420 ~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 481 (487)
. -+++++.++|.+++.++.....+++ .+ +. ..-+-+...+++.+.|++
T Consensus 324 ~-----~d~~~~~~ai~~~l~~~~~~~~~~~----~~-~~----~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 324 A-----DDPEEFVAAIEKALLEDGPARERRR----LR-LA----AQNSWDARAAEMLEALQE 371 (373)
T ss_pred C-----CCHHHHHHHHHHHHhcCCchHHHHH----HH-HH----HHCCHHHHHHHHHHHHHh
Confidence 2 2689999999998764321222211 11 22 245666677777766654
No 126
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.84 E-value=0.15 Score=51.84 Aligned_cols=99 Identities=10% Similarity=0.102 Sum_probs=66.2
Q ss_pred cccccCcccccccccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEE-EeecCCCccCHHHHHHHHHHhccC
Q 011381 363 QVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFR-VKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 363 ~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~-l~~~~~~~~~~~~l~~av~~vl~~ 441 (487)
.++++|+ ++|..==++ +.-|+..|||.|.+++ | +-....+.. +|..-. .+.++ ++.+++.+.+.+++++
T Consensus 323 ~iIs~~d--l~ig~RlHa-~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~~~~~---l~~~~Li~~v~~~~~~ 392 (426)
T PRK10017 323 KILGACE--LTVGTRLHS-AIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAIDIRH---LLDGSLQAMVADTLGQ 392 (426)
T ss_pred HHHhhCC--EEEEecchH-HHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEechhh---CCHHHHHHHHHHHHhC
Confidence 6788898 888633333 4458889999999997 4 333344466 888755 56665 8899999999999997
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 011381 442 EEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIW 479 (487)
Q Consensus 442 ~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 479 (487)
. +.+++..++--+++++ -+.+.+.++++.+
T Consensus 393 r--~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~ 422 (426)
T PRK10017 393 L--PALNARLAEAVSRERQ------TGMQMVQSVLERI 422 (426)
T ss_pred H--HHHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 5 4455555554444443 2334555555544
No 127
>PHA01633 putative glycosyl transferase group 1
Probab=95.49 E-value=0.14 Score=50.19 Aligned_cols=83 Identities=16% Similarity=0.062 Sum_probs=52.7
Q ss_pred Cceec---cCCCcc---cccccCccccccc----ccCchhHHHHHhhCCceecccc------cccc------hhhhHhhh
Q 011381 352 GLVVP---SWAPQA---QVLSHGSTGGFLS----HCGWNSILESIVHGVPIIAWPL------YSEQ------KMNAVLLT 409 (487)
Q Consensus 352 ~v~~~---~~~pq~---~iL~~~~~~~~I~----HgG~gt~~eal~~GvP~v~~P~------~~DQ------~~na~~v~ 409 (487)
+|.+. +++++. ++++.++ +||. -|=..++.||+++|+|+|+--. .+|+ ..+.....
T Consensus 202 ~V~f~g~~G~~~~~dl~~~y~~aD--ifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~ 279 (335)
T PHA01633 202 NVHFVAEFGHNSREYIFAFYGAMD--FTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYY 279 (335)
T ss_pred cEEEEecCCCCCHHHHHHHHHhCC--EEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhc
Confidence 56665 455543 5677788 6664 2334578999999999998633 2332 22332222
Q ss_pred c-ccceeEEEeecCCCccCHHHHHHHHHHhccC
Q 011381 410 D-DLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 410 ~-~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~ 441 (487)
. ..|.|..++. .+++++.+++.+++..
T Consensus 280 ~~~~g~g~~~~~-----~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 280 DKEHGQKWKIHK-----FQIEDMANAIILAFEL 307 (335)
T ss_pred CcccCceeeecC-----CCHHHHHHHHHHHHhc
Confidence 1 1466766654 5799999999998543
No 128
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.41 E-value=0.16 Score=52.09 Aligned_cols=123 Identities=20% Similarity=0.272 Sum_probs=80.7
Q ss_pred CCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHH-----hhcCCC
Q 011381 278 SESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLD-----RTKGVG 352 (487)
Q Consensus 278 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-----~~~~~~ 352 (487)
+..+||++|--.--++++.++..++-|++.+.-++|.+...-. .+ .+|+. ...+..
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~--------------ge-----~rf~ty~~~~Gl~p~r 817 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV--------------GE-----QRFRTYAEQLGLEPDR 817 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc--------------ch-----HHHHHHHHHhCCCccc
Confidence 4569999998888889999999999999999999999887533 01 12211 112234
Q ss_pred ceeccCCCccc-----ccccCcccccccccCchhHHHHHhhCCceecccccc-cchhhhHhhhcccceeEEEeec
Q 011381 353 LVVPSWAPQAQ-----VLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYS-EQKMNAVLLTDDLKVSFRVKVN 421 (487)
Q Consensus 353 v~~~~~~pq~~-----iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~-DQ~~na~~v~~~~G~G~~l~~~ 421 (487)
|++.+-++-.+ .|.--.+.-+.+ -|..|.++.|+.|||||.+|.-. --..-+..+.. +|+|-.+-++
T Consensus 818 iifs~va~k~eHvrr~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak~ 890 (966)
T KOG4626|consen 818 IIFSPVAAKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAKN 890 (966)
T ss_pred eeeccccchHHHHHhhhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhhh
Confidence 44444333221 222222234455 46789999999999999999754 33344556677 8999755443
No 129
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.97 E-value=0.044 Score=46.80 Aligned_cols=96 Identities=22% Similarity=0.203 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCcchHHHHHHHHHHhHHHH
Q 011381 27 PLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDFQIETRITLTLVRSLSSL 106 (487)
Q Consensus 27 p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (487)
-+..|+++|+++ ||+|+++++... .... +....++.+..++..... ..... +. ....+
T Consensus 6 ~~~~l~~~L~~~-G~~V~v~~~~~~--------~~~~--~~~~~~~~~~~~~~~~~~---~~~~~---~~-----~~~~~ 63 (160)
T PF13579_consen 6 YVRELARALAAR-GHEVTVVTPQPD--------PEDD--EEEEDGVRVHRLPLPRRP---WPLRL---LR-----FLRRL 63 (160)
T ss_dssp HHHHHHHHHHHT-T-EEEEEEE-----------GGG---SEEETTEEEEEE--S-SS---SGGGH---CC-----HHHHH
T ss_pred HHHHHHHHHHHC-CCEEEEEecCCC--------Cccc--ccccCCceEEeccCCccc---hhhhh---HH-----HHHHH
Confidence 467899999775 999999997644 1110 011235666666543221 11110 00 11122
Q ss_pred HHHHHHHhccCCceEEEeCCCcchH-HHHHH-HhCCCcEEEe
Q 011381 107 RDALKVLAESTRLVALVVDPFGSAA-FDVAN-EVGVPAYVFF 146 (487)
Q Consensus 107 ~~~l~~~~~~~~~D~VI~D~~~~~~-~~~A~-~lgIP~v~~~ 146 (487)
...+ ..+..+||+|.+.....+. ..++. ..++|+|.-.
T Consensus 64 ~~~l--~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 64 RRLL--AARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HHHC--HHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred HHHH--hhhccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 2222 1156799999977743222 23455 7899987643
No 130
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.79 E-value=0.43 Score=49.61 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=68.2
Q ss_pred CCceeccCCCc-ccccccCccccccc---ccC-chhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCc
Q 011381 351 VGLVVPSWAPQ-AQVLSHGSTGGFLS---HCG-WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~~~~~~pq-~~iL~~~~~~~~I~---HgG-~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.+|.+.+|..+ ..+|+.++ +||. .-| .+++.||+++|+|+|+... ..+...+.+ -..|..++..+
T Consensus 455 d~V~FlG~~~Dv~~~LaaAD--VfVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~d-G~nG~LVp~~D--- 524 (578)
T PRK15490 455 ERILFVGASRDVGYWLQKMN--VFILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIE-GVSGFILDDAQ--- 524 (578)
T ss_pred CcEEECCChhhHHHHHHhCC--EEEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHccc-CCcEEEECCCC---
Confidence 56888888654 45688888 7774 334 5699999999999997665 345666667 67888887653
Q ss_pred cCHHHHHHHHH---HhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 011381 426 VGREDIANYAK---GLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIW 479 (487)
Q Consensus 426 ~~~~~l~~av~---~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 479 (487)
.+.+.+++. .+... ......+++..++.+.+.-|.+..+++..+.+
T Consensus 525 --~~aLa~ai~lA~aL~~l------l~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~ 573 (578)
T PRK15490 525 --TVNLDQACRYAEKLVNL------WRSRTGICQQTQSFLQERFTVEHMVGTFVKTI 573 (578)
T ss_pred --hhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 445555442 22221 11122333333333335677777777666543
No 131
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.65 Score=47.65 Aligned_cols=106 Identities=18% Similarity=0.214 Sum_probs=73.5
Q ss_pred CCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhc-----CC
Q 011381 277 PSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTK-----GV 351 (487)
Q Consensus 277 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-----~~ 351 (487)
|+.-+||+||+...-..++.+..-+.-|+..+.-++|..+.+.. ..+-..+.+..+ ..
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~-----------------~~~~~~l~~la~~~Gv~~e 489 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD-----------------AEINARLRDLAEREGVDSE 489 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc-----------------HHHHHHHHHHHHHcCCChh
Confidence 34569999999998889999998888888889889998887533 011122222222 22
Q ss_pred CceeccCCCcc---cccccCccccccc---ccCchhHHHHHhhCCceecccccccchh
Q 011381 352 GLVVPSWAPQA---QVLSHGSTGGFLS---HCGWNSILESIVHGVPIIAWPLYSEQKM 403 (487)
Q Consensus 352 ~v~~~~~~pq~---~iL~~~~~~~~I~---HgG~gt~~eal~~GvP~v~~P~~~DQ~~ 403 (487)
..++.+-.|.. +-+.-+| +|.. =||..|+.|+|..|||+|..+ ++|+.
T Consensus 490 RL~f~p~~~~~~h~a~~~iAD--lvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~Fa 543 (620)
T COG3914 490 RLRFLPPAPNEDHRARYGIAD--LVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFA 543 (620)
T ss_pred heeecCCCCCHHHHHhhchhh--eeeecccCCCccchHHHHHhcCceeeec--cHHHH
Confidence 44555544433 3333455 5554 499999999999999999988 88874
No 132
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=94.03 E-value=6.8 Score=38.75 Aligned_cols=41 Identities=7% Similarity=0.125 Sum_probs=35.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcC-CCEEEEEecCCC
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQY-NFLVTIFIPTID 51 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~-GH~Vt~~~~~~~ 51 (487)
+++||++-....|++.=..++.++|.++. +.+|++++.+..
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~ 46 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDT 46 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccCh
Confidence 56899999999999999999999997654 589999997744
No 133
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=93.91 E-value=2.1 Score=42.29 Aligned_cols=104 Identities=16% Similarity=0.213 Sum_probs=63.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcC-CCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEE-eCCCCCCCCCCCCc
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQY-NFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTI-FLPPVSFDDLPDDF 89 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 89 (487)
||||++-..+.|++.=..++.++|.++. +.+|++++.+. ...+.+..+ .+..+ .++.. ...
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~----------~~~l~~~~P-~vd~vi~~~~~------~~~ 63 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAW----------CRPLLSRMP-EVNEAIPMPLG------HGA 63 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechh----------hHHHHhcCC-ccCEEEecccc------cch
Confidence 5799999999999999999999997754 68999999763 344444433 23222 22210 000
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEE
Q 011381 90 QIETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYV 144 (487)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~ 144 (487)
..+ ....+.+++ ++..++|++|.=.-..-...++...|+|..+
T Consensus 64 ---~~~--------~~~~~l~~~-lr~~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 64 ---LEI--------GERRRLGHS-LREKRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ---hhh--------HHHHHHHHH-HHhcCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 001 111122222 2345999998554444455667777888654
No 134
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.72 E-value=1.3 Score=38.85 Aligned_cols=116 Identities=20% Similarity=0.100 Sum_probs=59.1
Q ss_pred CCCccChHHHHHHHHHH-HhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCcchHHHHHH
Q 011381 19 TPGIGHLIPLVELAKRL-VHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDFQIETRITL 97 (487)
Q Consensus 19 ~~~~GH~~p~l~La~~L-~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (487)
.++-||+.=|+.|.+.+ ..+..++..+++..+. .+.....++.+.......+...+.... . +......+..
T Consensus 5 ~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~----~S~~k~~~~~~~~~~~~~~~~~~r~r~--v--~q~~~~~~~~ 76 (170)
T PF08660_consen 5 LGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDK----QSRSKAEQLEKSSSKRHKILEIPRARE--V--GQSYLTSIFT 76 (170)
T ss_pred EcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCc----ccHHHHHHHHHhccccceeeccceEEE--e--chhhHhhHHH
Confidence 48899999999999999 3333466666665443 221112222222221112333332110 0 1111112222
Q ss_pred HHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHH--HHHHHh------CCCcEEEec
Q 011381 98 TLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAF--DVANEV------GVPAYVFFT 147 (487)
Q Consensus 98 ~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~--~~A~~l------gIP~v~~~~ 147 (487)
.+......+.-.. ..+||+||+..-..|.+ .+|..+ |.+.|.+-+
T Consensus 77 ~l~~~~~~~~il~-----r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 77 TLRAFLQSLRILR-----RERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred HHHHHHHHHHHHH-----HhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 2222222222222 33899999888666655 578888 899887533
No 135
>PRK14098 glycogen synthase; Provisional
Probab=93.67 E-value=1.1 Score=46.76 Aligned_cols=113 Identities=12% Similarity=0.008 Sum_probs=67.4
Q ss_pred CCceeccCCCcc---cccccCcccccccc---cCc-hhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCC
Q 011381 351 VGLVVPSWAPQA---QVLSHGSTGGFLSH---CGW-NSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 423 (487)
Q Consensus 351 ~~v~~~~~~pq~---~iL~~~~~~~~I~H---gG~-gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
.+|.+.++.+.. .+++.+| +|+.- -|. .+.+||+++|+|.|+....+-........++ -+.|..++..
T Consensus 362 ~~V~~~g~~~~~~~~~~~a~aD--i~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~-~~~G~l~~~~-- 436 (489)
T PRK14098 362 EQVSVQTEFTDAFFHLAIAGLD--MLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSED-KGSGFIFHDY-- 436 (489)
T ss_pred CCEEEEEecCHHHHHHHHHhCC--EEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCC-CCceeEeCCC--
Confidence 467777777764 5788888 66532 222 3778999999998887664321111111123 3678777654
Q ss_pred CccCHHHHHHHHHHhc---cCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh
Q 011381 424 GLVGREDIANYAKGLI---QGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWK 480 (487)
Q Consensus 424 ~~~~~~~l~~av~~vl---~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 480 (487)
+++.+.++|.+++ ++ +.. .++++ ++++..+-|-+..++++.+-.+
T Consensus 437 ---d~~~la~ai~~~l~~~~~---~~~---~~~~~---~~~~~~~fsw~~~a~~y~~lY~ 484 (489)
T PRK14098 437 ---TPEALVAKLGEALALYHD---EER---WEELV---LEAMERDFSWKNSAEEYAQLYR 484 (489)
T ss_pred ---CHHHHHHHHHHHHHHHcC---HHH---HHHHH---HHHhcCCCChHHHHHHHHHHHH
Confidence 5899999999876 33 222 12222 2233356666666666665443
No 136
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=93.22 E-value=0.91 Score=37.92 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=57.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCcchH
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDFQIE 92 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (487)
+|++++.....| ...+++.|.++ ||+|++++.... ...... ..++....++.. ... ..
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~-g~~V~ii~~~~~---------~~~~~~--~~~i~~~~~~~~----~k~---~~ 58 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKR-GYDVHIITPRND---------YEKYEI--IEGIKVIRLPSP----RKS---PL 58 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHC-CCEEEEEEcCCC---------chhhhH--hCCeEEEEecCC----CCc---cH
Confidence 367777655556 45779999775 999999998543 111111 235666666421 000 11
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHH---HHHHHhC-CCcEE
Q 011381 93 TRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAF---DVANEVG-VPAYV 144 (487)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~---~~A~~lg-IP~v~ 144 (487)
..+ .. -.+ ..++++.+||+|.+......+. .++...+ +|++.
T Consensus 59 ----~~~-~~-~~l----~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~ 104 (139)
T PF13477_consen 59 ----NYI-KY-FRL----RKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIY 104 (139)
T ss_pred ----HHH-HH-HHH----HHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEE
Confidence 111 11 123 3444455999998888654322 3556678 88774
No 137
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=93.13 E-value=6.2 Score=38.88 Aligned_cols=107 Identities=12% Similarity=0.076 Sum_probs=63.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcC-CCEEEEEecCCCCCCCCchhHHHHHhhcCCCCce-EEeCCCCCCCCCCCCcc
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQY-NFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSIS-TIFLPPVSFDDLPDDFQ 90 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 90 (487)
|||++-..+.|++.=..++.++|.++. +.+|++++.+.+ ..+.+..+ .+. ...++.... ..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~----------~~l~~~~p-~vd~vi~~~~~~~------~~ 63 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQET----------IPILSENP-DINALYGLDRKKA------KA 63 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcCh----------HHHHhcCC-CccEEEEeChhhh------cc
Confidence 589999999999999999999997765 589999998743 33444333 232 233321100 00
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEEE
Q 011381 91 IETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYVF 145 (487)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~ 145 (487)
....+ ..+...+..+ +..++|++|.-........++...|.|..+-
T Consensus 64 ~~~~~--------~~~~~l~~~l-r~~~yD~vidl~~~~~s~ll~~l~~a~~riG 109 (344)
T TIGR02201 64 GERKL--------ANQFHLIKVL-RANRYDLVVNLTDQWMVAILVKLLNARVKIG 109 (344)
T ss_pred hHHHH--------HHHHHHHHHH-HhCCCCEEEECCcchHHHHHHHhcCCCeEEe
Confidence 00001 1111222332 3459999996544444556787889986654
No 138
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=92.50 E-value=1.3 Score=34.07 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=53.1
Q ss_pred ccCchhHHHHHhhCCceecccccccchhhhHhhhcccc-eeEEEeecCCCccCHHHHHHHHHHhccCchhHH-HHHHHHH
Q 011381 376 HCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLK-VSFRVKVNENGLVGREDIANYAKGLIQGEEGKL-LRKKMRA 453 (487)
Q Consensus 376 HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~-~~~~a~~ 453 (487)
+|-..-+.|++++|+|+|.-+. ......+.. | -++..+ +.+++.+++..+++| +. .++-+++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~~-------~~~el~~~i~~ll~~---~~~~~~ia~~ 72 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITYN-------DPEELAEKIEYLLEN---PEERRRIAKN 72 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEEC-------CHHHHHHHHHHHHCC---HHHHHHHHHH
Confidence 4555689999999999998765 333333333 3 333332 589999999999998 54 4444444
Q ss_pred HHHHHHHhcCCCCChHHHHHHHH
Q 011381 454 LKDAAANALSPDGSSTKSLAQLA 476 (487)
Q Consensus 454 l~~~~~~~~~~~g~~~~~~~~~~ 476 (487)
-.+.++ ..-+.+.-+++++
T Consensus 73 a~~~v~----~~~t~~~~~~~il 91 (92)
T PF13524_consen 73 ARERVL----KRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHH----HhCCHHHHHHHHH
Confidence 444454 3667777777665
No 139
>PHA01630 putative group 1 glycosyl transferase
Probab=92.27 E-value=1 Score=44.27 Aligned_cols=112 Identities=8% Similarity=0.037 Sum_probs=63.5
Q ss_pred CCCccc---ccccCcccccc--cc-c-CchhHHHHHhhCCceecccccc--cch---hhhHhhhcc----------ccee
Q 011381 358 WAPQAQ---VLSHGSTGGFL--SH-C-GWNSILESIVHGVPIIAWPLYS--EQK---MNAVLLTDD----------LKVS 415 (487)
Q Consensus 358 ~~pq~~---iL~~~~~~~~I--~H-g-G~gt~~eal~~GvP~v~~P~~~--DQ~---~na~~v~~~----------~G~G 415 (487)
++|+.+ +++.+| +|| ++ . ...++.||+++|+|+|+.-..+ |.- .|.-.+... .++|
T Consensus 197 ~v~~~~l~~~y~~aD--v~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 197 PLPDDDIYSLFAGCD--ILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVG 274 (331)
T ss_pred cCCHHHHHHHHHhCC--EEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccc
Confidence 355433 467777 444 22 2 2558999999999999976543 321 121111110 1234
Q ss_pred EEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhc
Q 011381 416 FRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWKN 481 (487)
Q Consensus 416 ~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 481 (487)
..++ .+.+++.+++.++|.+..-+.++++..+-+.... +.-+.+...+++.+.+++
T Consensus 275 ~~v~------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 275 YFLD------PDIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILEK 330 (331)
T ss_pred cccC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHhc
Confidence 4433 2467778888888876211234444444444443 467877887777776653
No 140
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.20 E-value=2.2 Score=37.27 Aligned_cols=90 Identities=9% Similarity=0.115 Sum_probs=48.9
Q ss_pred CCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCcc-hHHHHHHHHHHhHHHHHHHHHHHhc-c
Q 011381 39 YNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDFQ-IETRITLTLVRSLSSLRDALKVLAE-S 116 (487)
Q Consensus 39 ~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~-~ 116 (487)
+||+|+|++.... . ..+.|+....+.... ....+.. +...+...+.+. ......+.++.+ .
T Consensus 2 ~gh~v~fl~~~~~----------~----~~~~GV~~~~y~~~~--~~~~~~~~~~~~~e~~~~rg-~av~~a~~~L~~~G 64 (171)
T PF12000_consen 2 RGHEVVFLTERKR----------P----PIPPGVRVVRYRPPR--GPTPGTHPYVRDFEAAVLRG-QAVARAARQLRAQG 64 (171)
T ss_pred CCCEEEEEecCCC----------C----CCCCCcEEEEeCCCC--CCCCCCCcccccHHHHHHHH-HHHHHHHHHHHHcC
Confidence 4999999995433 0 012356666654321 1111211 222233332222 222233333322 4
Q ss_pred CCceEEEeCCCcchHHHHHHHh-CCCcEEE
Q 011381 117 TRLVALVVDPFGSAAFDVANEV-GVPAYVF 145 (487)
Q Consensus 117 ~~~D~VI~D~~~~~~~~~A~~l-gIP~v~~ 145 (487)
..||+||++.-...++-+-..+ +.|.+.+
T Consensus 65 f~PDvI~~H~GWGe~Lflkdv~P~a~li~Y 94 (171)
T PF12000_consen 65 FVPDVIIAHPGWGETLFLKDVFPDAPLIGY 94 (171)
T ss_pred CCCCEEEEcCCcchhhhHHHhCCCCcEEEE
Confidence 5789999998766666788888 8998764
No 141
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=92.00 E-value=8.7 Score=37.61 Aligned_cols=103 Identities=19% Similarity=0.279 Sum_probs=61.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcC-CCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceE-EeCCCCCCCCCCCCcc
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQY-NFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSIST-IFLPPVSFDDLPDDFQ 90 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 90 (487)
|||++-..+.|++.=..++.++|.+.. +.+|++++.+. ...+.+..+ .+.- ..++.. .+.
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~----------~~~l~~~~p-~id~v~~~~~~------~~~- 62 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAW----------CRPLLERMP-EIRQAIDMPLG------HGA- 62 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechh----------hHHHHhcCc-hhceeeecCCc------ccc-
Confidence 589999999999999999999997655 68999999763 334444433 2221 122110 000
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEE
Q 011381 91 IETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYV 144 (487)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~ 144 (487)
. .+. .....++++ +..++|++|.-.-......++...|+|..+
T Consensus 63 -~-~~~--------~~~~~~~~l-r~~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 63 -L-ELT--------ERRRLGRSL-REERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred -h-hhh--------HHHHHHHHH-hhcCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 0 010 111222222 345999999765455555667777888654
No 142
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=91.73 E-value=0.92 Score=46.65 Aligned_cols=104 Identities=12% Similarity=0.045 Sum_probs=69.5
Q ss_pred ccCCCccc---ccccCccccccc---ccCch-hHHHHHhhCCc----eecccccccchhhhHhhhcccceeEEEeecCCC
Q 011381 356 PSWAPQAQ---VLSHGSTGGFLS---HCGWN-SILESIVHGVP----IIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENG 424 (487)
Q Consensus 356 ~~~~pq~~---iL~~~~~~~~I~---HgG~g-t~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 424 (487)
.+.+|+.+ ++..+| +||. +=|+| ++.||+++|+| +|+--..+-- . . ++-|+.++..
T Consensus 341 ~~~~~~~el~aly~aaD--v~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~---~-l~~gllVnP~--- 407 (456)
T TIGR02400 341 NRSYDREELMALYRAAD--VGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----Q---E-LNGALLVNPY--- 407 (456)
T ss_pred cCCCCHHHHHHHHHhCc--EEEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----H---H-hCCcEEECCC---
Confidence 44566654 466788 6664 34654 78899999999 5554444321 1 1 3346777654
Q ss_pred ccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh
Q 011381 425 LVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWK 480 (487)
Q Consensus 425 ~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~ 480 (487)
+.+.++++|.++|+... ++.+++.+++.+.+.+ -+...-.+.+++.|.
T Consensus 408 --d~~~lA~aI~~aL~~~~-~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 408 --DIDGMADAIARALTMPL-EEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred --CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 58999999999998422 4566777777777663 577777888887764
No 143
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.72 E-value=15 Score=34.78 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=33.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCC-CEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYN-FLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~G-H~Vt~~~~~~~ 51 (487)
+||++-..+.|++.=..++.++|.++.+ -+|++++.+..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~ 40 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWF 40 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhh
Confidence 5889999999999999999999977643 79999998743
No 144
>PLN02939 transferase, transferring glycosyl groups
Probab=90.53 E-value=3.6 Score=45.64 Aligned_cols=83 Identities=7% Similarity=0.014 Sum_probs=53.4
Q ss_pred CCceeccCCCcc---cccccCcccccccc----cCchhHHHHHhhCCceecccccc--cchhh--hHhhhcccceeEEEe
Q 011381 351 VGLVVPSWAPQA---QVLSHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYS--EQKMN--AVLLTDDLKVSFRVK 419 (487)
Q Consensus 351 ~~v~~~~~~pq~---~iL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~~P~~~--DQ~~n--a~~v~~~~G~G~~l~ 419 (487)
.+|.+.++.+.. .+++.+| +||.- +-..+.+||+++|+|.|+....+ |--.+ ...+...-+-|+.++
T Consensus 837 drV~FlG~~de~lah~IYAaAD--IFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~ 914 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASD--MFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL 914 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCC--EEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec
Confidence 467777777764 4788888 77742 22348999999999999876654 22111 111111035677766
Q ss_pred ecCCCccCHHHHHHHHHHhcc
Q 011381 420 VNENGLVGREDIANYAKGLIQ 440 (487)
Q Consensus 420 ~~~~~~~~~~~l~~av~~vl~ 440 (487)
.. +++.+.+++.+++.
T Consensus 915 ~~-----D~eaLa~AL~rAL~ 930 (977)
T PLN02939 915 TP-----DEQGLNSALERAFN 930 (977)
T ss_pred CC-----CHHHHHHHHHHHHH
Confidence 53 58888888888764
No 145
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=89.57 E-value=1.2 Score=43.35 Aligned_cols=134 Identities=11% Similarity=0.047 Sum_probs=75.9
Q ss_pred CeEEEEEeCCC---cCCCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCcee
Q 011381 279 ESVLFVCFGSG---GTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVV 355 (487)
Q Consensus 279 ~~~v~vs~Gs~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~ 355 (487)
++.|.+.-|+. ...+.+.+.++++.+.+.+.++++..+.... ....+.+.+..... .+
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e-----------------~~~~~~i~~~~~~~--~l 239 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAE-----------------KQRAERIAEALPGA--VV 239 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHH-----------------HHHHHHHHhhCCCC--ee
Confidence 45666666653 4457778888999887767777765454221 00111111111111 22
Q ss_pred ccC--CCc-ccccccCcccccccccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeE-EEeecCCCccCHHHH
Q 011381 356 PSW--APQ-AQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSF-RVKVNENGLVGREDI 431 (487)
Q Consensus 356 ~~~--~pq-~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~-~l~~~~~~~~~~~~l 431 (487)
.+- ++| .+++++|+ ++|+ +-.|.++=|.+.|+|.|++ +.. .+..+..- +|-.. .+.......++++++
T Consensus 240 ~g~~sL~el~ali~~a~--l~I~-~DSgp~HlAaa~g~P~i~l-fg~---t~p~~~~P-~~~~~~~~~~~~~~~I~~~~V 311 (319)
T TIGR02193 240 LPKMSLAEVAALLAGAD--AVVG-VDTGLTHLAAALDKPTVTL-YGA---TDPGRTGG-YGKPNVALLGESGANPTPDEV 311 (319)
T ss_pred cCCCCHHHHHHHHHcCC--EEEe-CCChHHHHHHHcCCCEEEE-ECC---CCHhhccc-CCCCceEEccCccCCCCHHHH
Confidence 222 333 56889999 9999 5668899999999999876 111 11122111 22221 111111223899999
Q ss_pred HHHHHHhc
Q 011381 432 ANYAKGLI 439 (487)
Q Consensus 432 ~~av~~vl 439 (487)
.++++++|
T Consensus 312 ~~ai~~~~ 319 (319)
T TIGR02193 312 LAALEELL 319 (319)
T ss_pred HHHHHhhC
Confidence 99998875
No 146
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=89.02 E-value=21 Score=35.01 Aligned_cols=106 Identities=16% Similarity=0.191 Sum_probs=63.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcC-CCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCc
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQY-NFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDF 89 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (487)
+|+|+++-....|++.=.+++-..|.++. +.++++++++.. ..+.+..+ .+.-+..-. ....
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~----------~~i~~~~p-~I~~vi~~~------~~~~ 63 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGF----------APILKLNP-EIDKVIIID------KKKK 63 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccch----------HHHHhcCh-Hhhhhcccc------cccc
Confidence 46899999999999999999999997763 389999988744 33333222 111111000 0001
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHHHHHHHhCCCcEE
Q 011381 90 QIETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAFDVANEVGVPAYV 144 (487)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~ 144 (487)
. .....+..+.+.+ ++.++|+||.=.-.+-...++...++|.-.
T Consensus 64 ~----------~~~~~~~~l~~~l-r~~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 64 G----------LGLKERLALLRTL-RKERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred c----------cchHHHHHHHHHh-hccCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0 0111122222222 344899999777666666777788888544
No 147
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.46 E-value=0.99 Score=42.54 Aligned_cols=106 Identities=18% Similarity=0.147 Sum_probs=68.1
Q ss_pred ccCCCcccccccCcccccccccCchhHHHHHhhCCceecccccccch--hhhHhhhcccceeEEEeecCCCccCHHHHHH
Q 011381 356 PSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQK--MNAVLLTDDLKVSFRVKVNENGLVGREDIAN 433 (487)
Q Consensus 356 ~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~--~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ 433 (487)
..|-...++|.+++ +.|--.|- .+-+++--|+|+|.+|-.+-|+ ..|.+-.+.+|+.+.+-..+ +..-..
T Consensus 300 lsqqsfadiLH~ad--aalgmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~-----aq~a~~ 371 (412)
T COG4370 300 LSQQSFADILHAAD--AALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPE-----AQAAAQ 371 (412)
T ss_pred EeHHHHHHHHHHHH--HHHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCc-----hhhHHH
Confidence 45555667777777 55554442 2344788999999999999985 45777777788888776543 222234
Q ss_pred HHHHhccCchhHHHHHHHH-HHHHHHHHhcCCCCChHHHHHHHH
Q 011381 434 YAKGLIQGEEGKLLRKKMR-ALKDAAANALSPDGSSTKSLAQLA 476 (487)
Q Consensus 434 av~~vl~~~~~~~~~~~a~-~l~~~~~~~~~~~g~~~~~~~~~~ 476 (487)
+.+++|.| +.+..+.+ .=++++-+ -|...++.+++-
T Consensus 372 ~~q~ll~d---p~r~~air~nGqrRiGq----aGaa~rIAe~l~ 408 (412)
T COG4370 372 AVQELLGD---PQRLTAIRHNGQRRIGQ----AGAARRIAEELG 408 (412)
T ss_pred HHHHHhcC---hHHHHHHHhcchhhccC----cchHHHHHHHHH
Confidence 44458998 77777766 34455554 455555544443
No 148
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=85.35 E-value=11 Score=32.31 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=23.1
Q ss_pred CCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 20 PGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 20 ~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
...|=-.-...|+++|+++ ||+|+++++...
T Consensus 10 ~~GG~e~~~~~l~~~l~~~-G~~v~v~~~~~~ 40 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKR-GHEVTVVSPGVK 40 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHT-T-EEEEEESS-T
T ss_pred CCChHHHHHHHHHHHHHHC-CCEEEEEEcCCC
Confidence 3556667789999999775 999999987644
No 149
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=83.25 E-value=2.7 Score=43.33 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=62.8
Q ss_pred eccCCCccc---ccccCccccccc---ccCch-hHHHHHhhCCc----eecccccc--cchhhhHhhhcccceeEEEeec
Q 011381 355 VPSWAPQAQ---VLSHGSTGGFLS---HCGWN-SILESIVHGVP----IIAWPLYS--EQKMNAVLLTDDLKVSFRVKVN 421 (487)
Q Consensus 355 ~~~~~pq~~---iL~~~~~~~~I~---HgG~g-t~~eal~~GvP----~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~ 421 (487)
+.+++++.+ ++..++ +||. +-|+| ++.||+++|+| +|+--..+ ++ ..-|+.++..
T Consensus 345 ~~g~v~~~el~~~y~~aD--v~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~----------~~~g~lv~p~ 412 (460)
T cd03788 345 LYRSLPREELAALYRAAD--VALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE----------LSGALLVNPY 412 (460)
T ss_pred EeCCCCHHHHHHHHHhcc--EEEeCccccccCcccceeEEEecCCCceEEEeccccchhh----------cCCCEEECCC
Confidence 446777654 477788 6652 44544 67999999999 44432222 22 1235666653
Q ss_pred CCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 011381 422 ENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIW 479 (487)
Q Consensus 422 ~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 479 (487)
+.+.++++|.+++++.. +..+++.++..+.+. .-+...-++.++..|
T Consensus 413 -----d~~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 413 -----DIDEVADAIHRALTMPL-EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred -----CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 58999999999998631 233344444444443 456677777777665
No 150
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=82.26 E-value=9.4 Score=37.07 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=41.4
Q ss_pred CCcccccccCcccccccccCchhHHHHHhhCCceecccccccchh----hhHhhhcccceeEEEee
Q 011381 359 APQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKM----NAVLLTDDLKVSFRVKV 420 (487)
Q Consensus 359 ~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~----na~~v~~~~G~G~~l~~ 420 (487)
=|...+|+.++ .+|||=--.+-++||+..|+|+.++|+.. +.. -...+++ .|+-.....
T Consensus 220 nPy~~~La~ad-~i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~-~g~~r~~~~ 282 (311)
T PF06258_consen 220 NPYLGFLAAAD-AIVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEE-RGAVRPFTG 282 (311)
T ss_pred CcHHHHHHhCC-EEEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHH-CCCEEECCC
Confidence 35677888888 26677777889999999999999999876 322 2344455 555555443
No 151
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=82.13 E-value=23 Score=36.22 Aligned_cols=79 Identities=9% Similarity=0.095 Sum_probs=56.0
Q ss_pred CCce-eccCCC-c-ccccccCcccccccccC--chhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCc
Q 011381 351 VGLV-VPSWAP-Q-AQVLSHGSTGGFLSHCG--WNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~-~~~~~p-q-~~iL~~~~~~~~I~HgG--~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.|++ ..++.+ + .+++..|++=+-|.||+ ..++.||+.+|+|++..=...... .+.. . |..++..
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~----~~i~--~-g~l~~~~---- 396 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR----DFIA--S-ENIFEHN---- 396 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc----cccc--C-CceecCC----
Confidence 4555 466677 3 67899999888888876 568999999999999865442211 1111 1 4445543
Q ss_pred cCHHHHHHHHHHhccC
Q 011381 426 VGREDIANYAKGLIQG 441 (487)
Q Consensus 426 ~~~~~l~~av~~vl~~ 441 (487)
+.+++.++|.++|++
T Consensus 397 -~~~~m~~~i~~lL~d 411 (438)
T TIGR02919 397 -EVDQLISKLKDLLND 411 (438)
T ss_pred -CHHHHHHHHHHHhcC
Confidence 589999999999998
No 152
>PRK14099 glycogen synthase; Provisional
Probab=81.61 E-value=12 Score=38.80 Aligned_cols=41 Identities=17% Similarity=0.051 Sum_probs=29.7
Q ss_pred CCcEEEEEcCC------CccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 10 PRAYVAMVPTP------GIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 10 ~~~~il~~~~~------~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
++|+|++++.- +-|=-.-.-+|.++|+++ ||+|.++.|...
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~-g~~v~v~~P~y~ 48 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAH-GVEVRTLVPGYP 48 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHC-CCcEEEEeCCCc
Confidence 36899998742 234444567888999765 999999998653
No 153
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=81.36 E-value=4.2 Score=42.58 Aligned_cols=90 Identities=10% Similarity=0.090 Sum_probs=61.7
Q ss_pred CceeccCCC--c-ccccccCccccccccc---CchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCc
Q 011381 352 GLVVPSWAP--Q-AQVLSHGSTGGFLSHC---GWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGL 425 (487)
Q Consensus 352 ~v~~~~~~p--q-~~iL~~~~~~~~I~Hg---G~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.|.+.++.+ + ..++..+. ++|.=+ |.+|..||+.+|+|+| .......|+. ..-|..++
T Consensus 410 ~v~f~gy~~e~dl~~~~~~ar--l~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d-~~NG~li~------ 473 (519)
T TIGR03713 410 RIAFTTLTNEEDLISALDKLR--LIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEH-NKNGYIID------ 473 (519)
T ss_pred EEEEEecCCHHHHHHHHhhhe--EEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEc-CCCcEEeC------
Confidence 466777766 2 44666666 777655 6779999999999999 4445666666 67777762
Q ss_pred cCHHHHHHHHHHhccCch-hHHHHHHHHHHHHHH
Q 011381 426 VGREDIANYAKGLIQGEE-GKLLRKKMRALKDAA 458 (487)
Q Consensus 426 ~~~~~l~~av~~vl~~~~-~~~~~~~a~~l~~~~ 458 (487)
+..+|.+++..+|++.. ...+...|-+.+++.
T Consensus 474 -d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~y 506 (519)
T TIGR03713 474 -DISELLKALDYYLDNLKNWNYSLAYSIKLIDDY 506 (519)
T ss_pred -CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 47899999999999842 334444444444333
No 154
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=78.88 E-value=58 Score=30.73 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=50.8
Q ss_pred CCceeccCCC---cccccccCcccccccc---cCchh-HHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCC
Q 011381 351 VGLVVPSWAP---QAQVLSHGSTGGFLSH---CGWNS-ILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNEN 423 (487)
Q Consensus 351 ~~v~~~~~~p---q~~iL~~~~~~~~I~H---gG~gt-~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
.++...++++ ...++..++ +++.- .|.|. +.||+++|+|+|.... ......+.. .+.|..+..
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~--~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~-~~~g~~~~~--- 326 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASAD--VFVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVED-GETGLLVPP--- 326 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCC--EEEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcC-CCceEecCC---
Confidence 5677788888 234666676 55554 35544 5999999999966543 333333344 334662222
Q ss_pred CccCHHHHHHHHHHhccC
Q 011381 424 GLVGREDIANYAKGLIQG 441 (487)
Q Consensus 424 ~~~~~~~l~~av~~vl~~ 441 (487)
...+.+.+++..++.+
T Consensus 327 --~~~~~~~~~i~~~~~~ 342 (381)
T COG0438 327 --GDVEELADALEQLLED 342 (381)
T ss_pred --CCHHHHHHHHHHHhcC
Confidence 2478999999999987
No 155
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=77.30 E-value=20 Score=30.62 Aligned_cols=140 Identities=18% Similarity=0.211 Sum_probs=71.3
Q ss_pred eEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCC
Q 011381 280 SVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWA 359 (487)
Q Consensus 280 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~ 359 (487)
|.|-|-+||.+ +....+++...|++.+..+-..+.+-.. .|+.+.+ ++
T Consensus 1 p~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saHR-------------------~p~~l~~-----------~~ 48 (150)
T PF00731_consen 1 PKVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAHR-------------------TPERLLE-----------FV 48 (150)
T ss_dssp -EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TTT-------------------SHHHHHH-----------HH
T ss_pred CeEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEeccC-------------------CHHHHHH-----------HH
Confidence 35667778754 6778889999999998765444433222 3443321 11
Q ss_pred CcccccccCcccccccccCch----hHHHHHhhCCceecccccccchhhh----HhhhcccceeEEEeecCCCccCHHHH
Q 011381 360 PQAQVLSHGSTGGFLSHCGWN----SILESIVHGVPIIAWPLYSEQKMNA----VLLTDDLKVSFRVKVNENGLVGREDI 431 (487)
Q Consensus 360 pq~~iL~~~~~~~~I~HgG~g----t~~eal~~GvP~v~~P~~~DQ~~na----~~v~~~~G~G~~l~~~~~~~~~~~~l 431 (487)
...+- .+++ +||.=.|.. ++..++ .-.|+|.+|...++.... ..++--.|+++..-.- |+..++..+
T Consensus 49 ~~~~~-~~~~--viIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-~~~~nAA~~ 123 (150)
T PF00731_consen 49 KEYEA-RGAD--VIIAVAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-NNGFNAALL 123 (150)
T ss_dssp HHTTT-TTES--EEEEEEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-THHHHHHHH
T ss_pred HHhcc-CCCE--EEEEECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-cCchHHHHH
Confidence 11000 1233 666666644 333333 368999999987654221 2222213555432220 011455555
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHH
Q 011381 432 ANYAKGLIQGEEGKLLRKKMRALKDAAAN 460 (487)
Q Consensus 432 ~~av~~vl~~~~~~~~~~~a~~l~~~~~~ 460 (487)
...|-. +.| ++++++.+..++.+++
T Consensus 124 A~~ILa-~~d---~~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 124 AARILA-LKD---PELREKLRAYREKMKE 148 (150)
T ss_dssp HHHHHH-TT----HHHHHHHHHHHHHHHH
T ss_pred HHHHHh-cCC---HHHHHHHHHHHHHHHc
Confidence 555543 345 7899998888888775
No 156
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=75.92 E-value=14 Score=30.96 Aligned_cols=39 Identities=15% Similarity=0.003 Sum_probs=34.5
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
|+.+|++.+.++-+|-.-..-++..|.+ .|++|++.+..
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~-~G~eVi~LG~~ 40 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTE-AGFEVINLGVM 40 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHH-CCCEEEECCCC
Confidence 4668999999999999999999999955 59999999865
No 157
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=75.80 E-value=29 Score=32.03 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=32.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
-+++...|+.|=..=.+.++..++.+.|+.|.|++.+..
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 456777789999999999999987655999999998754
No 158
>PRK06321 replicative DNA helicase; Provisional
Probab=74.05 E-value=31 Score=35.64 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=31.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 14 VAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 14 il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
|++..-|+.|-..-.+.+|...+.+.|..|.|++-+-.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs 266 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMT 266 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 56667799999999999999987555999999987744
No 159
>PRK05595 replicative DNA helicase; Provisional
Probab=73.32 E-value=24 Score=36.23 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=31.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
=+++..-|+.|-..=.+.+|..++.+.|+.|.|++-+..
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms 241 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS 241 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 456677799999999999999876445999999987744
No 160
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=73.27 E-value=3.3 Score=36.12 Aligned_cols=23 Identities=17% Similarity=-0.005 Sum_probs=16.5
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEE
Q 011381 24 HLIPLVELAKRLVHQYNFLVTIF 46 (487)
Q Consensus 24 H~~p~l~La~~L~~~~GH~Vt~~ 46 (487)
|.....+|+++|.+++|+++.+.
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~ 23 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVE 23 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEE
Confidence 77888999999965346555444
No 161
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=71.12 E-value=7.9 Score=31.60 Aligned_cols=39 Identities=15% Similarity=-0.023 Sum_probs=24.6
Q ss_pred cEEEEEcCCCcc---ChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 12 AYVAMVPTPGIG---HLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 12 ~~il~~~~~~~G---H~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
|+|+|+.-|-.+ .-.-.++|+.+-++| ||+|.++.+...
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~R-Ghev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRR-GHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHT-T-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHC-CCEEEEEEcCcE
Confidence 577887766554 334567888888665 999999987643
No 162
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=70.76 E-value=32 Score=30.59 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=45.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcC-CCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCcch
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQY-NFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDFQI 91 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (487)
.++-+...+-|-++-...|+++|.+++ |+.|.+-+.... ..+...+.++..+....+|.. .
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~t--------g~~~~~~~~~~~v~~~~~P~D----~------ 83 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPT--------GREMARKLLPDRVDVQYLPLD----F------ 83 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CC--------HHHHHHGG-GGG-SEEE---S----S------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCc--------hHHHHHHhCCCCeEEEEeCcc----C------
Confidence 455566688999999999999996532 688876655432 222222222333444444421 0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcchHH--HHHHHhCCCcEEEec
Q 011381 92 ETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGSAAF--DVANEVGVPAYVFFT 147 (487)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~~~~--~~A~~lgIP~v~~~~ 147 (487)
. ..++..++.+ +||++|.-..-.|.. ..|++.|||.+.+..
T Consensus 84 ----~-------~~~~rfl~~~----~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 ----P-------WAVRRFLDHW----RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ----H-------HHHHHHHHHH------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ----H-------HHHHHHHHHh----CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 0 1122334444 999877444344543 478889999877644
No 163
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=70.65 E-value=33 Score=32.21 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=23.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCC
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTI 50 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~ 50 (487)
|+|+++. +.|. -..|+++|.++ ||+|+..+...
T Consensus 1 m~ILvlG--GT~e---gr~la~~L~~~-g~~v~~s~~t~ 33 (256)
T TIGR00715 1 MTVLLMG--GTVD---SRAIAKGLIAQ-GIEILVTVTTS 33 (256)
T ss_pred CeEEEEe--chHH---HHHHHHHHHhC-CCeEEEEEccC
Confidence 4666654 3332 67899999765 99998877553
No 164
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=70.50 E-value=11 Score=41.71 Aligned_cols=100 Identities=10% Similarity=0.037 Sum_probs=63.4
Q ss_pred cccccCccccccc---ccCch-hHHHHHhhCCc---eecccccccchhhhHhhhcccc-eeEEEeecCCCccCHHHHHHH
Q 011381 363 QVLSHGSTGGFLS---HCGWN-SILESIVHGVP---IIAWPLYSEQKMNAVLLTDDLK-VSFRVKVNENGLVGREDIANY 434 (487)
Q Consensus 363 ~iL~~~~~~~~I~---HgG~g-t~~eal~~GvP---~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~l~~a 434 (487)
+++..++ +||. .-|+| +..|++++|.| +++++-++ ..+. . +| -|+.++.. +.+.++++
T Consensus 371 aly~~AD--vfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~---~-l~~~allVnP~-----D~~~lA~A 436 (797)
T PLN03063 371 ALYAITD--VMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQ---S-LGAGALLVNPW-----NITEVSSA 436 (797)
T ss_pred HHHHhCC--EEEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchh---h-hcCCeEEECCC-----CHHHHHHH
Confidence 5667788 6663 44777 67799999999 44444221 1222 2 33 47777764 58999999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcC
Q 011381 435 AKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWKNP 482 (487)
Q Consensus 435 v~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 482 (487)
|.++|+... +..+++.+++.+.+.+ -+...-.+.+++.|.+.
T Consensus 437 I~~aL~m~~-~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 437 IKEALNMSD-EERETRHRHNFQYVKT-----HSAQKWADDFMSELNDI 478 (797)
T ss_pred HHHHHhCCH-HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHH
Confidence 999998211 3455566666666663 35556666666666543
No 165
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=70.47 E-value=14 Score=38.80 Aligned_cols=78 Identities=13% Similarity=-0.026 Sum_probs=47.0
Q ss_pred cccccccCccccccc---ccC-chhHHHHHhhCCceecccccc-cchhhhHhhhcccceeEEEeecCCCc--cCHHHHHH
Q 011381 361 QAQVLSHGSTGGFLS---HCG-WNSILESIVHGVPIIAWPLYS-EQKMNAVLLTDDLKVSFRVKVNENGL--VGREDIAN 433 (487)
Q Consensus 361 q~~iL~~~~~~~~I~---HgG-~gt~~eal~~GvP~v~~P~~~-DQ~~na~~v~~~~G~G~~l~~~~~~~--~~~~~l~~ 433 (487)
..+++..|+ ++|. +=| .-++.||+++|+|+|.-...+ ..+.. ..+......|+.+...++.. -+.+.|.+
T Consensus 468 y~E~~~g~d--l~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 468 YEEFVRGCH--LGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred hHHHhhhce--EEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 556777788 5554 344 448999999999999987643 22222 11222012577665432111 24677888
Q ss_pred HHHHhccC
Q 011381 434 YAKGLIQG 441 (487)
Q Consensus 434 av~~vl~~ 441 (487)
++.++++.
T Consensus 545 ~m~~~~~~ 552 (590)
T cd03793 545 YMYEFCQL 552 (590)
T ss_pred HHHHHhCC
Confidence 88888854
No 166
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=70.38 E-value=15 Score=31.89 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=22.1
Q ss_pred cccccccCch------hHHHHHhhCCceecccc
Q 011381 371 GGFLSHCGWN------SILESIVHGVPIIAWPL 397 (487)
Q Consensus 371 ~~~I~HgG~g------t~~eal~~GvP~v~~P~ 397 (487)
+++++|+|-| .+.||...++|||++.-
T Consensus 62 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 62 VAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EEEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 3778888754 77899999999999953
No 167
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=70.37 E-value=19 Score=34.10 Aligned_cols=42 Identities=17% Similarity=0.334 Sum_probs=34.6
Q ss_pred ceeccCCCcccccccCcccccccccCchhHHHHHhhCCceecccc
Q 011381 353 LVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPL 397 (487)
Q Consensus 353 v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~ 397 (487)
+.+.+-++-.+++.+++ .+||-.+ .+-.||+.+|+|++++.-
T Consensus 185 ~~~~~~~~~~~Ll~~s~--~VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSD--AVVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCC--EEEEECC-HHHHHHHHcCCceEEecC
Confidence 44566678889999999 8998665 478999999999999764
No 168
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=69.84 E-value=41 Score=32.81 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=31.7
Q ss_pred cEEEEEcC-CCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 12 AYVAMVPT-PGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 12 ~~il~~~~-~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
+||+|++- ++-|-..=.-++|..|++. |.+|.++++.+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~-g~kvLlvStDPA 41 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES-GKKVLLVSTDPA 41 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHc-CCcEEEEEeCCC
Confidence 46666655 8999999999999999876 998888877655
No 169
>PRK05748 replicative DNA helicase; Provisional
Probab=69.36 E-value=48 Score=34.04 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=32.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
-+++...|+.|-..-.+.++...+.+.|+.|.|++-+..
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms 243 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMG 243 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 467777799999999999999986555999999987744
No 170
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=68.12 E-value=79 Score=27.28 Aligned_cols=100 Identities=17% Similarity=0.125 Sum_probs=57.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEE---ecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCc
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIF---IPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDF 89 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (487)
-|.+.+.++.|-....+.+|-+.+.. |++|.|+ -.... . ......+.++ ++.+...+........ ..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~~v~~vQFlKg~~~----~---gE~~~l~~l~-~v~~~~~g~~~~~~~~-~~ 73 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGH-GYRVGVVQFLKGGWK----Y---GELKALERLP-NIEIHRMGRGFFWTTE-ND 73 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEEeCCCCc----c---CHHHHHHhCC-CcEEEECCCCCccCCC-Ch
Confidence 56777888999999999999999765 9999983 33211 0 1333444444 6777776543211111 11
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcc
Q 011381 90 QIETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGS 129 (487)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~ 129 (487)
.... ..+...+ +..++.+....+|+||.|-...
T Consensus 74 --~~~~----~~a~~~~-~~a~~~~~~~~~dLlVLDEi~~ 106 (159)
T cd00561 74 --EEDI----AAAAEGW-AFAKEAIASGEYDLVILDEINY 106 (159)
T ss_pred --HHHH----HHHHHHH-HHHHHHHhcCCCCEEEEechHh
Confidence 1111 1111222 2233334456899999998654
No 171
>PRK08760 replicative DNA helicase; Provisional
Probab=67.83 E-value=26 Score=36.33 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=32.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
-|++..-|+.|-..=.+.+|...+.+.|+.|.|++-+..
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs 269 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS 269 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCC
Confidence 456677799999999999999886555999999987754
No 172
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=67.30 E-value=22 Score=28.77 Aligned_cols=36 Identities=25% Similarity=0.142 Sum_probs=31.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
||++.+.++-.|.....-++..|.+ .|++|.+....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~-~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRD-AGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHH-CCCEEEECCCC
Confidence 4889999999999999999999955 59999887754
No 173
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=67.02 E-value=14 Score=31.52 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=20.7
Q ss_pred ccccccCc------hhHHHHHhhCCceecccc
Q 011381 372 GFLSHCGW------NSILESIVHGVPIIAWPL 397 (487)
Q Consensus 372 ~~I~HgG~------gt~~eal~~GvP~v~~P~ 397 (487)
++++|+|- +.+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 67777553 478899999999999964
No 174
>PLN02470 acetolactate synthase
Probab=66.64 E-value=8 Score=41.30 Aligned_cols=28 Identities=18% Similarity=0.443 Sum_probs=23.1
Q ss_pred cccccccccCch------hHHHHHhhCCceeccc
Q 011381 369 STGGFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 369 ~~~~~I~HgG~g------t~~eal~~GvP~v~~P 396 (487)
.++++++|.|-| .+.+|...++|||+|.
T Consensus 76 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 445888888854 8899999999999995
No 175
>PRK06849 hypothetical protein; Provisional
Probab=66.51 E-value=40 Score=33.79 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
.+++|+++.. .....+.+++.|.++ ||+|.++.....
T Consensus 3 ~~~~VLI~G~----~~~~~l~iar~l~~~-G~~Vi~~d~~~~ 39 (389)
T PRK06849 3 TKKTVLITGA----RAPAALELARLFHNA-GHTVILADSLKY 39 (389)
T ss_pred CCCEEEEeCC----CcHHHHHHHHHHHHC-CCEEEEEeCCch
Confidence 4678888863 233689999999775 999998876543
No 176
>PRK05636 replicative DNA helicase; Provisional
Probab=65.51 E-value=29 Score=36.20 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=31.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
=|++..-|+.|-..-.+.+|...+.+.|..|.|++-+-.
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs 305 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMS 305 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCC
Confidence 356677799999999999998876555899999987744
No 177
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=65.07 E-value=57 Score=33.32 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=32.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
-+++...|+.|-..-.+.++..++.+.|+.|.|++-+..
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~ 235 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMS 235 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCC
Confidence 456677799999999999999987655999999988754
No 178
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=64.55 E-value=90 Score=28.10 Aligned_cols=116 Identities=7% Similarity=-0.042 Sum_probs=60.3
Q ss_pred ceeccCCCcccccccCcccccccccCchhHHHHHh----hCCceecccccccchhhh-----HhhhcccceeEEEeecCC
Q 011381 353 LVVPSWAPQAQVLSHGSTGGFLSHCGWNSILESIV----HGVPIIAWPLYSEQKMNA-----VLLTDDLKVSFRVKVNEN 423 (487)
Q Consensus 353 v~~~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~----~GvP~v~~P~~~DQ~~na-----~~v~~~~G~G~~l~~~~~ 423 (487)
+.......+..-+..++ ++|.--+--.+.+.++ .++++-+ .|.+..+ ..+.+ -++-+.+..+..
T Consensus 56 i~~~~~~~~~~~l~~ad--lViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~-g~l~iaIsT~G~ 128 (202)
T PRK06718 56 IRWKQKEFEPSDIVDAF--LVIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHR-GKLTISVSTDGA 128 (202)
T ss_pred EEEEecCCChhhcCCce--EEEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEc-CCeEEEEECCCC
Confidence 44444444455677778 7777666555555554 4444333 3443332 22333 334444444331
Q ss_pred CccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 011381 424 GLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLA 476 (487)
Q Consensus 424 ~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 476 (487)
...-+..|++.|.+++. ++-..+-+.+.++++.+++.+......++.++.++
T Consensus 129 sP~la~~lr~~ie~~~~-~~~~~~~~~~~~~R~~~k~~~~~~~~R~~~~~~~~ 180 (202)
T PRK06718 129 SPKLAKKIRDELEALYD-ESYESYIDFLYECRQKIKELQIEKREKQILLQEVL 180 (202)
T ss_pred ChHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 11334567777777663 23356778888888888864322222333444444
No 179
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=64.50 E-value=17 Score=37.43 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=49.8
Q ss_pred cccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHH
Q 011381 375 SHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRA 453 (487)
Q Consensus 375 ~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~ 453 (487)
-|=|. ++.||+++|.|+|+. ++..=+..++. .--|...++.+ -....+++++.++.+| ++++.++.+
T Consensus 376 E~FGi-v~IEAMa~glPvvAt----~~GGP~EiV~~-~~tG~l~dp~~---e~~~~~a~~~~kl~~~---p~l~~~~~~ 442 (495)
T KOG0853|consen 376 EHFGI-VPIEAMACGLPVVAT----NNGGPAEIVVH-GVTGLLIDPGQ---EAVAELADALLKLRRD---PELWARMGK 442 (495)
T ss_pred CCccc-eeHHHHhcCCCEEEe----cCCCceEEEEc-CCcceeeCCch---HHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 45554 789999999999864 55556667777 67787777643 3445799999999999 777666544
No 180
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=64.21 E-value=9.1 Score=38.09 Aligned_cols=111 Identities=12% Similarity=0.123 Sum_probs=66.6
Q ss_pred Ccee-ccCCCcccccccCcccccccccCchhHHHHHhhCCceecccccccchhhhHh----hhcccceeEEEeecCCCcc
Q 011381 352 GLVV-PSWAPQAQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVL----LTDDLKVSFRVKVNENGLV 426 (487)
Q Consensus 352 ~v~~-~~~~pq~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~----v~~~~G~G~~l~~~~~~~~ 426 (487)
+++. .+..+-.++|..+| ++||--. ..+.|.+..+.|+|....-.|.+...+- ... ..-|..+ -
T Consensus 253 ~i~~~~~~~~~~~ll~~aD--iLITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~-~~pg~~~-------~ 321 (369)
T PF04464_consen 253 NIIFVSDNEDIYDLLAAAD--ILITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEE-DLPGPIV-------Y 321 (369)
T ss_dssp TEEE-TT-S-HHHHHHT-S--EEEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTT-SSSS-EE-------S
T ss_pred cEEECCCCCCHHHHHHhcC--EEEEech-hHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHh-hCCCcee-------C
Confidence 5554 34456778999999 9999885 4889999999999988766665532210 111 2222222 3
Q ss_pred CHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 011381 427 GREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLA 476 (487)
Q Consensus 427 ~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 476 (487)
+.++|.++|+.++.+. ..++++-++..+.+-+ ...|.++++.++.++
T Consensus 322 ~~~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 322 NFEELIEAIENIIENP--DEYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp SHHHHHHHHTTHHHHH--HHTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred CHHHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 6799999999988752 3456666777777754 334666666776665
No 181
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=63.76 E-value=49 Score=28.62 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=21.6
Q ss_pred ccccccCch------hHHHHHhhCCceecccc
Q 011381 372 GFLSHCGWN------SILESIVHGVPIIAWPL 397 (487)
Q Consensus 372 ~~I~HgG~g------t~~eal~~GvP~v~~P~ 397 (487)
++++|+|-| .+.+|...++|||+|.-
T Consensus 66 v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 66 VCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred EEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 777777754 78999999999999973
No 182
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=63.62 E-value=9.5 Score=35.38 Aligned_cols=99 Identities=12% Similarity=0.134 Sum_probs=53.0
Q ss_pred CCeEEEEEeCCC---cCCCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCce
Q 011381 278 SESVLFVCFGSG---GTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLV 354 (487)
Q Consensus 278 ~~~~v~vs~Gs~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~ 354 (487)
+++.|.+..|+. ...+.+.+.++++.+.+.+++++...+..+. ....-+.+........+.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~----------------~~~~~~~~~~~~~~~~~~ 167 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ----------------EKEIADQIAAGLQNPVIN 167 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH----------------HHHHHHHHHTTHTTTTEE
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH----------------HHHHHHHHHHhcccceEe
Confidence 356888888875 4457788899999998887665544443220 000000111111111233
Q ss_pred eccCCC--c-ccccccCcccccccccCchhHHHHHhhCCceecc
Q 011381 355 VPSWAP--Q-AQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAW 395 (487)
Q Consensus 355 ~~~~~p--q-~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~ 395 (487)
+.+-.+ + .+++.+++ ++|+ .-.|.++=|.+.|+|+|++
T Consensus 168 ~~~~~~l~e~~ali~~a~--~~I~-~Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 168 LAGKTSLRELAALISRAD--LVIG-NDTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp ETTTS-HHHHHHHHHTSS--EEEE-ESSHHHHHHHHTT--EEEE
T ss_pred ecCCCCHHHHHHHHhcCC--EEEe-cCChHHHHHHHHhCCEEEE
Confidence 323222 2 56888999 9999 4557899999999999988
No 183
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=62.64 E-value=64 Score=32.79 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=32.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
=+++...|+.|-..-.+.+|..++.+.|+.|.|++.+..
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~ 234 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS 234 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 456677799999999999998886445999999997744
No 184
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=62.63 E-value=1.5e+02 Score=28.53 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=34.5
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCC
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTI 50 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~ 50 (487)
...+|.+...|+-|-=.=.-.|++.|.++ ||+|.++.-.+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~-G~rVaVlAVDP 89 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRER-GHRVAVLAVDP 89 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHC-CcEEEEEEECC
Confidence 35689999999999999999999999765 99999887543
No 185
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=61.86 E-value=43 Score=31.23 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=20.9
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 24 HLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 24 H~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
|---+.+|+++|. . +++|+++.|..+
T Consensus 12 ~a~Gi~aL~~al~-~-~~dV~VVAP~~~ 37 (252)
T COG0496 12 HAPGIRALARALR-E-GADVTVVAPDRE 37 (252)
T ss_pred CCHHHHHHHHHHh-h-CCCEEEEccCCC
Confidence 4455778999994 4 999999999866
No 186
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=61.09 E-value=12 Score=36.38 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=33.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcC-CCEEEEEecC
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQY-NFLVTIFIPT 49 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~-GH~Vt~~~~~ 49 (487)
|||+++-..+.|++.=..++.+.|.+.. +.+|++++.+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~ 39 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEE 39 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECH
Confidence 5899999999999999999999997654 6999999976
No 187
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=60.58 E-value=12 Score=30.83 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=29.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
|||++...++.+=+. ...+.++|.++ |++|.++.++
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~-g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRA-GWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTT-TSEEEEEESH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhC-CCEEEEEECC
Confidence 478888878877777 99999999665 9999999877
No 188
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=60.57 E-value=89 Score=28.98 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=21.8
Q ss_pred CceEEE-eCCCcch-HHHHHHHhCCCcEEEecc
Q 011381 118 RLVALV-VDPFGSA-AFDVANEVGVPAYVFFTT 148 (487)
Q Consensus 118 ~~D~VI-~D~~~~~-~~~~A~~lgIP~v~~~~~ 148 (487)
-||+++ .|+..-- +..=|.++|||+|.+.-+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 499765 7774443 335788999999987544
No 189
>PRK08006 replicative DNA helicase; Provisional
Probab=60.48 E-value=95 Score=32.13 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=31.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 14 VAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 14 il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
|++..-|+.|-..-.+.+|...+.+.|+.|.|++-+-.
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~ 264 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP 264 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 56666799999999999999987545999999987743
No 190
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=59.85 E-value=93 Score=31.50 Aligned_cols=42 Identities=24% Similarity=0.178 Sum_probs=37.2
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 9 IPRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 9 ~~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
.+|..|+++..=+.|-..-.-.||+.|.+ +|+.|.+++...+
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~ 139 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTY 139 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccC
Confidence 45678999999999999999999999976 5999999998766
No 191
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=57.82 E-value=92 Score=32.37 Aligned_cols=110 Identities=11% Similarity=0.062 Sum_probs=70.2
Q ss_pred ceeccCCCcccc---cccCccccccc--ccCchhH-HHHHhhCC----ceecccccccchhhhHhhhcccceeEEEeecC
Q 011381 353 LVVPSWAPQAQV---LSHGSTGGFLS--HCGWNSI-LESIVHGV----PIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNE 422 (487)
Q Consensus 353 v~~~~~~pq~~i---L~~~~~~~~I~--HgG~gt~-~eal~~Gv----P~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 422 (487)
+++.+.+|+.++ +..++| ++|| .-|+|-+ .|.++++. |+|.=-+. -|. +. +.-++.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa--~~-l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA--VE-LKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch--hh-cCCCEEECC--
Confidence 456677887664 445773 2232 3588854 59999987 44332222 222 44 555777876
Q ss_pred CCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcC
Q 011381 423 NGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWKNP 482 (487)
Q Consensus 423 ~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 482 (487)
.+.+.++++|.+.|+... ++-++|.+++.+.+++ -....=.+.+++.|...
T Consensus 433 ---~d~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 433 ---YDPVRMDETIYVALAMPK-AEQQARMREMFDAVNY-----YDVQRWADEFLAAVSPQ 483 (487)
T ss_pred ---CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhhc
Confidence 459999999999999633 3456777777777764 35555677777777643
No 192
>PRK08506 replicative DNA helicase; Provisional
Probab=57.39 E-value=99 Score=32.03 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=31.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
=+++...|+.|-..-.+.+|...++. |+.|.|++-+..
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~-g~~V~~fSlEMs 231 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQ-DKGVAFFSLEMP 231 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhc-CCcEEEEeCcCC
Confidence 45667779999999999999998764 999999987744
No 193
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=55.92 E-value=32 Score=25.63 Aligned_cols=35 Identities=20% Similarity=0.106 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEE
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIF 46 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~ 46 (487)
+.-++++..+...|...+-.+|+.|++. |..|...
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~-G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQ-GYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 4567888889999999999999999765 9888533
No 194
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=54.90 E-value=92 Score=23.64 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=21.5
Q ss_pred HHHhccCCceEEEeCCCc---------chHHHHHHHhCCCcE
Q 011381 111 KVLAESTRLVALVVDPFG---------SAAFDVANEVGVPAY 143 (487)
Q Consensus 111 ~~~~~~~~~D~VI~D~~~---------~~~~~~A~~lgIP~v 143 (487)
.++++..++|+||..+.. .....+|...+||++
T Consensus 48 ~~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 48 LDLIKNGEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHhcCCCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 344456799999975431 112247888999975
No 195
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=53.87 E-value=1.6e+02 Score=26.22 Aligned_cols=105 Identities=13% Similarity=0.056 Sum_probs=59.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCcc
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDFQ 90 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (487)
+-.|.+++..+.|-....+.+|.+.+.. |++|.++---.... .. ......+.++ ++.+...+....... ..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~-G~~V~ivQFlKg~~--~~--GE~~~l~~l~-~v~~~~~g~~~~~~~-~~-- 92 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGH-GKKVGVVQFIKGAW--ST--GERNLLEFGG-GVEFHVMGTGFTWET-QD-- 92 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCC--cc--CHHHHHhcCC-CcEEEECCCCCcccC-CC--
Confidence 4578999999999999999999999765 99998865211100 00 1223333333 577777654211111 11
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCcc
Q 011381 91 IETRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFGS 129 (487)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~~ 129 (487)
.. .........+ +..++.+.+..+|+||.|-...
T Consensus 93 -~~---e~~~~~~~~~-~~a~~~l~~~~ydlvVLDEi~~ 126 (191)
T PRK05986 93 -RE---RDIAAAREGW-EEAKRMLADESYDLVVLDELTY 126 (191)
T ss_pred -cH---HHHHHHHHHH-HHHHHHHhCCCCCEEEEehhhH
Confidence 11 1111122222 2223334466999999998654
No 196
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=53.85 E-value=51 Score=33.60 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
+.|+||++..+++-| +|+++|.+. |+-..+++.+.+
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~-~~~~~~~~~pgn 38 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKS-NLLSELKVFPGN 38 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhC-CCCCEEEEECCc
Confidence 458999999999887 689999765 855444444433
No 197
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=53.83 E-value=98 Score=30.17 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=37.3
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 9 IPRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 9 ~~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
.+|--|+|+...+.|-..-.-.||..|.+. |+.|.++....+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~-g~~VllaA~DTF 178 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQ-GKSVLLAAGDTF 178 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHC-CCeEEEEecchH
Confidence 457788999999999999999999999765 999999988766
No 198
>PRK09165 replicative DNA helicase; Provisional
Probab=53.41 E-value=1.1e+02 Score=31.85 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=31.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhc--------------CCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQ--------------YNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~--------------~GH~Vt~~~~~~~ 51 (487)
=+++..-|+.|-..-.+.+|...+.+ .|..|.|++-+..
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs 271 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMS 271 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCC
Confidence 35667779999999999999988653 2788999987754
No 199
>PRK07773 replicative DNA helicase; Validated
Probab=53.29 E-value=1.2e+02 Score=34.39 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=32.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
-|++..-|+.|-..=.+.+|...+.+.|..|.|++-+..
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms 257 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMS 257 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 366777799999999999999987655889999987744
No 200
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=52.80 E-value=18 Score=39.83 Aligned_cols=112 Identities=18% Similarity=0.097 Sum_probs=66.7
Q ss_pred eeccCCCccc---ccccCcccccccc---cCch-hHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCcc
Q 011381 354 VVPSWAPQAQ---VLSHGSTGGFLSH---CGWN-SILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLV 426 (487)
Q Consensus 354 ~~~~~~pq~~---iL~~~~~~~~I~H---gG~g-t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 426 (487)
++.+++++.+ ++..++ +|+.- -|+| ++.||+++|+|-...|+..+--.-+ .+ +.-|+.++..
T Consensus 345 ~~~~~~~~~~l~~ly~~aD--v~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~---~~-l~~~llv~P~----- 413 (726)
T PRK14501 345 YFYRSLPFEELVALYRAAD--VALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAA---AE-LAEALLVNPN----- 413 (726)
T ss_pred EEeCCCCHHHHHHHHHhcc--EEEecccccccCcccceEEEEcCCCCceEEEecccchh---HH-hCcCeEECCC-----
Confidence 4556777764 566677 55542 3544 7889999977633333322211111 12 2336777764
Q ss_pred CHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcC
Q 011381 427 GREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWKNP 482 (487)
Q Consensus 427 ~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 482 (487)
+.+.++++|.++|+... ++.+++.+++.+.+. .-+...-++++++.|.+.
T Consensus 414 d~~~la~ai~~~l~~~~-~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 414 DIEGIAAAIKRALEMPE-EEQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 58999999999998521 344555555555554 346666777777666554
No 201
>PLN02929 NADH kinase
Probab=52.51 E-value=20 Score=34.39 Aligned_cols=66 Identities=11% Similarity=0.115 Sum_probs=43.7
Q ss_pred ccCcccccccccCchhHHHHHh---hCCceecccccc------cchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHH
Q 011381 366 SHGSTGGFLSHCGWNSILESIV---HGVPIIAWPLYS------EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAK 436 (487)
Q Consensus 366 ~~~~~~~~I~HgG~gt~~eal~---~GvP~v~~P~~~------DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~ 436 (487)
..++ ++|+-||=||++.|.+ .++|++++=... .++.|... +. .-+|..-. .+.+++.+++.
T Consensus 63 ~~~D--lvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~-r~lGfL~~------~~~~~~~~~L~ 132 (301)
T PLN02929 63 RDVD--LVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-AR-RSTGHLCA------ATAEDFEQVLD 132 (301)
T ss_pred CCCC--EEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cc-cCcccccc------CCHHHHHHHHH
Confidence 4456 9999999999999855 468888776532 12222221 11 23554332 56889999999
Q ss_pred HhccC
Q 011381 437 GLIQG 441 (487)
Q Consensus 437 ~vl~~ 441 (487)
+++++
T Consensus 133 ~il~g 137 (301)
T PLN02929 133 DVLFG 137 (301)
T ss_pred HHHcC
Confidence 99976
No 202
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=52.51 E-value=28 Score=31.19 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=27.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
||||+.-=-+. +---+.+|+++| ++.||+|+++.|...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L-~~~g~~V~VvAP~~~ 38 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKAL-SALGHDVVVVAPDSE 38 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHH-TTTSSEEEEEEESSS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHH-HhcCCeEEEEeCCCC
Confidence 56777665544 556688999999 555899999999876
No 203
>PRK05973 replicative DNA helicase; Provisional
Probab=52.19 E-value=94 Score=28.83 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=32.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
-+++..-|+.|-..=.+.++...+++ |+.|.|++-+..
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes 103 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYT 103 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCC
Confidence 46777779999999999999988765 999999998754
No 204
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=52.17 E-value=24 Score=36.33 Aligned_cols=53 Identities=11% Similarity=0.241 Sum_probs=38.8
Q ss_pred ccCcccccccccCchhHHHHHhh----CCceecccccccchhhhHhhhcccc-eeEEEeecCCCccCHHHHHHHHHHhcc
Q 011381 366 SHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLK-VSFRVKVNENGLVGREDIANYAKGLIQ 440 (487)
Q Consensus 366 ~~~~~~~~I~HgG~gt~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~l~~av~~vl~ 440 (487)
..++ ++|+=||=||++.|... ++|++.|- .| +|... + +.++++.+++.++++
T Consensus 261 ~~~D--lVIsiGGDGTlL~Aar~~~~~~iPILGIN---------------~G~LGFLt---~---i~~~e~~~~Le~il~ 317 (508)
T PLN02935 261 TKVD--LVITLGGDGTVLWAASMFKGPVPPVVPFS---------------MGSLGFMT---P---FHSEQYRDCLDAILK 317 (508)
T ss_pred cCCC--EEEEECCcHHHHHHHHHhccCCCcEEEEe---------------CCCcceec---c---cCHHHHHHHHHHHHc
Confidence 4566 99999999999999774 45666552 22 44432 2 678899999999987
Q ss_pred C
Q 011381 441 G 441 (487)
Q Consensus 441 ~ 441 (487)
+
T Consensus 318 G 318 (508)
T PLN02935 318 G 318 (508)
T ss_pred C
Confidence 5
No 205
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=51.98 E-value=81 Score=30.77 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=22.5
Q ss_pred CCceEEE-eCCCcc-hHHHHHHHhCCCcEEEecc
Q 011381 117 TRLVALV-VDPFGS-AAFDVANEVGVPAYVFFTT 148 (487)
Q Consensus 117 ~~~D~VI-~D~~~~-~~~~~A~~lgIP~v~~~~~ 148 (487)
..||+|| .|+..- .+..=|.++|||+|.+.=+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDT 184 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDT 184 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeC
Confidence 4799766 666443 3446788999999987543
No 206
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.88 E-value=80 Score=31.46 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=38.9
Q ss_pred cCCCCCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 5 KSKQIPRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 5 ~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
|+...++.-|.|+..-+.|-..-.-.||..+.++ |..+-+++...+
T Consensus 95 ~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkk-G~K~~LvcaDTF 140 (483)
T KOG0780|consen 95 QPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKK-GYKVALVCADTF 140 (483)
T ss_pred ccccCCCcEEEEEeccCCCcceeHHHHHHHHHhc-CCceeEEeeccc
Confidence 3455667788999999999999999999999665 999999987765
No 207
>PHA02542 41 41 helicase; Provisional
Probab=51.62 E-value=61 Score=33.53 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=31.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
=|++..-|+.|-..-.+.+|...++. |+.|.|++-+-.
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~~-g~~Vl~fSLEM~ 229 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQQ-GYNVLYISMEMA 229 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEEeccCC
Confidence 35666779999999999999999764 999999987643
No 208
>PRK06904 replicative DNA helicase; Validated
Probab=51.62 E-value=1.4e+02 Score=31.01 Aligned_cols=39 Identities=13% Similarity=0.207 Sum_probs=31.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
=|++..-|+.|-..-.+.+|...+.+.|+.|.|++-+-.
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs 261 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP 261 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 356667799999999999999886545999999988743
No 209
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=51.02 E-value=1.4e+02 Score=26.92 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=26.6
Q ss_pred EEEEc-CCCccChHHHHHHHHHHHhcCCCEEEEEec
Q 011381 14 VAMVP-TPGIGHLIPLVELAKRLVHQYNFLVTIFIP 48 (487)
Q Consensus 14 il~~~-~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~ 48 (487)
|++.. -...|-..-.+.|+++|.++ |++|.++-|
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~-g~~v~~~KP 36 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREA-GYSVAGYKP 36 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHc-CCceEEEee
Confidence 44443 35789999999999999765 999988764
No 210
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=50.63 E-value=1.5e+02 Score=27.13 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=23.9
Q ss_pred cCCceEEEeCCCcchHH---HHHHHhCCCcEE
Q 011381 116 STRLVALVVDPFGSAAF---DVANEVGVPAYV 144 (487)
Q Consensus 116 ~~~~D~VI~D~~~~~~~---~~A~~lgIP~v~ 144 (487)
+++.|+|+.|.+.+... .+++..|+|++.
T Consensus 176 ~~gadlIvLDCmGYt~~~r~~~~~~~g~PVlL 207 (221)
T PF07302_consen 176 EQGADLIVLDCMGYTQEMRDIVQRALGKPVLL 207 (221)
T ss_pred hcCCCEEEEECCCCCHHHHHHHHHHhCCCEEe
Confidence 45999999999888765 488889999764
No 211
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=50.56 E-value=32 Score=27.63 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=31.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
|+++...+..-|-.-+..|+..|.+ .||+|.++...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~-~G~~v~~~d~~ 37 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRK-AGHEVDILDAN 37 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHH-TTBEEEEEESS
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHH-CCCeEEEECCC
Confidence 7899999999999999999999965 59999988654
No 212
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=50.47 E-value=1.9e+02 Score=26.03 Aligned_cols=96 Identities=14% Similarity=0.079 Sum_probs=51.5
Q ss_pred ccccccCcccccccccCchhHHH-----HHhhCCceec--ccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHH
Q 011381 362 AQVLSHGSTGGFLSHCGWNSILE-----SIVHGVPIIA--WPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANY 434 (487)
Q Consensus 362 ~~iL~~~~~~~~I~HgG~gt~~e-----al~~GvP~v~--~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~a 434 (487)
...|..++ ++|..-|...+.+ |-..|+|+-+ -|-..| +.+-..+.+ -++-+.+..+.....-+..|++.
T Consensus 64 ~~dl~~~~--lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~-g~l~iaisT~G~sP~la~~lr~~ 139 (205)
T TIGR01470 64 ADILEGAF--LVIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDR-SPVVVAISSGGAAPVLARLLRER 139 (205)
T ss_pred HHHhCCcE--EEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEc-CCEEEEEECCCCCcHHHHHHHHH
Confidence 34466777 7777777654433 3346777732 232222 222223333 23444444432112334678888
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHHhc
Q 011381 435 AKGLIQGEEGKLLRKKMRALKDAAANAL 462 (487)
Q Consensus 435 v~~vl~~~~~~~~~~~a~~l~~~~~~~~ 462 (487)
|++.+.. +-..+-+.+.++++.+++..
T Consensus 140 ie~~l~~-~~~~~~~~~~~~R~~~k~~~ 166 (205)
T TIGR01470 140 IETLLPP-SLGDLATLAATWRDAVKKRL 166 (205)
T ss_pred HHHhcch-hHHHHHHHHHHHHHHHHhhC
Confidence 8888753 22456777777888877643
No 213
>PRK08840 replicative DNA helicase; Provisional
Probab=50.40 E-value=1.5e+02 Score=30.72 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=31.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 14 VAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 14 il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
|++..-|+.|-..-.+.+|...+.+.|+.|.|++-+-.
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs 257 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP 257 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 56666799999999999999987555999999988743
No 214
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=50.23 E-value=1.6e+02 Score=26.30 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=22.3
Q ss_pred CCceEEE-eCCCcc-hHHHHHHHhCCCcEEEecc
Q 011381 117 TRLVALV-VDPFGS-AAFDVANEVGVPAYVFFTT 148 (487)
Q Consensus 117 ~~~D~VI-~D~~~~-~~~~~A~~lgIP~v~~~~~ 148 (487)
..||+|| .|+..- .+..=|.++|||.|.+.-+
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dt 159 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDT 159 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecC
Confidence 4799776 665433 3345788899999987644
No 215
>PRK06749 replicative DNA helicase; Provisional
Probab=49.90 E-value=1.2e+02 Score=30.99 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=32.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
=|++..-|+.|-..-.+.+|...+.. |..|.|++-+-.
T Consensus 188 LiiIaarPgmGKTafal~ia~~~a~~-g~~v~~fSlEMs 225 (428)
T PRK06749 188 FVVLGARPSMGKTAFALNVGLHAAKS-GAAVGLFSLEMS 225 (428)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhc-CCCEEEEEeeCC
Confidence 35667779999999999999999764 999999987744
No 216
>PRK07004 replicative DNA helicase; Provisional
Probab=49.80 E-value=1.4e+02 Score=30.84 Aligned_cols=39 Identities=13% Similarity=0.328 Sum_probs=32.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
=|++..-|+.|-..-.+.+|..++.+.|+.|.|++-+-.
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~ 253 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMP 253 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 356677799999999999999886556999999987744
No 217
>PRK08322 acetolactate synthase; Reviewed
Probab=49.51 E-value=29 Score=36.66 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=21.7
Q ss_pred ccccccccCch------hHHHHHhhCCceeccc
Q 011381 370 TGGFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 370 ~~~~I~HgG~g------t~~eal~~GvP~v~~P 396 (487)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 33777777744 8899999999999985
No 218
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=48.96 E-value=1.8e+02 Score=26.05 Aligned_cols=119 Identities=15% Similarity=0.122 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCccccccc
Q 011381 296 QLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLS 375 (487)
Q Consensus 296 ~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~ 375 (487)
.-.++++.+...+.++|...+.= .-|.+.|.++++++ -|-=||+ +.=.
T Consensus 67 ~d~~l~~~l~~~~~dlvvLAGyM-------------------rIL~~~fl~~~~gr-----------IlNIHPS--LLP~ 114 (200)
T COG0299 67 FDRALVEALDEYGPDLVVLAGYM-------------------RILGPEFLSRFEGR-----------ILNIHPS--LLPA 114 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEcchH-------------------HHcCHHHHHHhhcc-----------eEecCcc--cccC
Confidence 44568899999988877655542 23667776665542 1234888 8899
Q ss_pred ccCchhHHHHHhhCCceeccccc-ccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHH
Q 011381 376 HCGWNSILESIVHGVPIIAWPLY-SEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRAL 454 (487)
Q Consensus 376 HgG~gt~~eal~~GvP~v~~P~~-~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l 454 (487)
++|..+..+|+.+|+..=++-+. .|-..-.--+.. ...+-+... -|.|.+.+.|.+.- - .-|-+..+.+
T Consensus 115 f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~--Q~~Vpv~~~----Dt~etl~~RV~~~E-h---~lyp~~v~~~ 184 (200)
T COG0299 115 FPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIA--QAAVPVLPG----DTAETLEARVLEQE-H---RLYPLAVKLL 184 (200)
T ss_pred CCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEE--EEeeeecCC----CCHHHHHHHHHHHH-H---HHHHHHHHHH
Confidence 99999999999999998666543 232211111111 222233333 38888888887642 2 4455555555
Q ss_pred HH
Q 011381 455 KD 456 (487)
Q Consensus 455 ~~ 456 (487)
.+
T Consensus 185 ~~ 186 (200)
T COG0299 185 AE 186 (200)
T ss_pred Hh
Confidence 44
No 219
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=48.63 E-value=1.2e+02 Score=28.40 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=31.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 14 VAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 14 il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
|++..-|+.|...-...+|..+++. |++|.++.....
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~-g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQ-GKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHC-CCCceEEeCCCc
Confidence 4556669999999999999999875 999999987654
No 220
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=48.11 E-value=50 Score=25.47 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=19.9
Q ss_pred HHhccCCceEEEeCCCcchH---------HHHHHHhCCCcE
Q 011381 112 VLAESTRLVALVVDPFGSAA---------FDVANEVGVPAY 143 (487)
Q Consensus 112 ~~~~~~~~D~VI~D~~~~~~---------~~~A~~lgIP~v 143 (487)
++++..++|+||..+..... ..+|...+||++
T Consensus 54 ~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 54 DLIKNGKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHTTSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHcCCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 33456699999976643321 247888899865
No 221
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=46.83 E-value=52 Score=33.59 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=20.8
Q ss_pred ccccccCch------hHHHHHhhCCceeccc
Q 011381 372 GFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 372 ~~I~HgG~g------t~~eal~~GvP~v~~P 396 (487)
++++|.|-| .+.+|.+.++|+|++-
T Consensus 66 v~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 96 (432)
T TIGR00173 66 AVVCTSGTAVANLLPAVIEASYSGVPLIVLT 96 (432)
T ss_pred EEEECCcchHhhhhHHHHHhcccCCcEEEEe
Confidence 777777744 7889999999999993
No 222
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=46.79 E-value=1.4e+02 Score=27.92 Aligned_cols=54 Identities=26% Similarity=0.246 Sum_probs=38.3
Q ss_pred HHHHHhhCCc---eecccccccchhhhHhhhcccceeEEEeecCCCc-cCHHHHHHHHH
Q 011381 382 ILESIVHGVP---IIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGL-VGREDIANYAK 436 (487)
Q Consensus 382 ~~eal~~GvP---~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~-~~~~~l~~av~ 436 (487)
+..+...|+| +|.+=--+.+.+|...+++ +++...+.++..+. -+.+.+..|.+
T Consensus 163 ~~~~~~~~~p~~~Iia~~GPfs~~~n~all~q-~~id~vItK~SG~~Gg~~~Ki~aA~e 220 (257)
T COG2099 163 LAKCEDLGVPPARIIAMRGPFSEEDNKALLEQ-YRIDVVVTKNSGGAGGTYEKIEAARE 220 (257)
T ss_pred HHHHHhcCCChhhEEEecCCcChHHHHHHHHH-hCCCEEEEccCCcccCcHHHHHHHHH
Confidence 4445566666 3555223678899999999 99999999876444 57777776654
No 223
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=46.69 E-value=47 Score=35.29 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=20.9
Q ss_pred ccccccCch------hHHHHHhhCCceeccc
Q 011381 372 GFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 372 ~~I~HgG~g------t~~eal~~GvP~v~~P 396 (487)
++++|.|-| .+.+|...++|+|+|.
T Consensus 79 v~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 79 VCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred EEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 777777644 7899999999999995
No 224
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=46.36 E-value=2.5e+02 Score=27.09 Aligned_cols=131 Identities=16% Similarity=0.054 Sum_probs=72.0
Q ss_pred eEEEEEeCC-C--cCCCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceec
Q 011381 280 SVLFVCFGS-G--GTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVP 356 (487)
Q Consensus 280 ~~v~vs~Gs-~--~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~ 356 (487)
+.|.+..|+ . -..+.+.+.++++.+.+.+.++++..+.... ....+.+.+.. .++.+.
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e-----------------~~~~~~i~~~~--~~~~l~ 239 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHE-----------------EQRAKRLAEGF--PYVEVL 239 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHH-----------------HHHHHHHHccC--Ccceec
Confidence 344433444 3 3457778888998887767776654454221 00111111111 122222
Q ss_pred cC--CCc-ccccccCcccccccccCchhHHHHHhhCCceecccccccchhhh------HhhhcccceeEEEeecCCCccC
Q 011381 357 SW--APQ-AQVLSHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNA------VLLTDDLKVSFRVKVNENGLVG 427 (487)
Q Consensus 357 ~~--~pq-~~iL~~~~~~~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na------~~v~~~~G~G~~l~~~~~~~~~ 427 (487)
+- +.+ .+++++|+ +||+. -.|.++=|.+.|+|+|++=-..|-..+. ..+.. .+ --..+ ++
T Consensus 240 g~~sL~elaali~~a~--l~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~---~~--~cm~~---I~ 308 (322)
T PRK10964 240 PKLSLEQVARVLAGAK--AVVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRS---PG--KSMAD---LS 308 (322)
T ss_pred CCCCHHHHHHHHHhCC--EEEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecC---CC--ccccc---CC
Confidence 22 233 56889999 99995 4578999999999998763222221111 11110 00 01233 78
Q ss_pred HHHHHHHHHHhcc
Q 011381 428 REDIANYAKGLIQ 440 (487)
Q Consensus 428 ~~~l~~av~~vl~ 440 (487)
+|.+.++++++|+
T Consensus 309 ~e~V~~~~~~~l~ 321 (322)
T PRK10964 309 AETVFQKLETLIS 321 (322)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988763
No 225
>PLN02939 transferase, transferring glycosyl groups
Probab=46.19 E-value=41 Score=37.75 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=32.0
Q ss_pred CCCCCcEEEEEcCC------CccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 7 KQIPRAYVAMVPTP------GIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 7 ~~~~~~~il~~~~~------~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
+.+++|+|++++.- +-|=-.-.-+|.++|+++ ||+|.+++|.+.
T Consensus 477 ~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~-GhdV~VIlP~Y~ 526 (977)
T PLN02939 477 GTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKK-GHLVEIVLPKYD 526 (977)
T ss_pred CCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHc-CCeEEEEeCCCc
Confidence 34678999998752 223334456899999765 999999998654
No 226
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=45.78 E-value=38 Score=36.03 Aligned_cols=26 Identities=12% Similarity=0.519 Sum_probs=21.3
Q ss_pred cccccccCch------hHHHHHhhCCceeccc
Q 011381 371 GGFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 371 ~~~I~HgG~g------t~~eal~~GvP~v~~P 396 (487)
+++++|.|-| .+.+|...++|+|+|-
T Consensus 80 gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 80 GVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred eEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3777777755 6889999999999985
No 227
>PRK10867 signal recognition particle protein; Provisional
Probab=45.74 E-value=2e+02 Score=29.48 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
++..|+++..++.|-..-...||..|+.+.|+.|.++....+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 456788888899999999999999996533999999988765
No 228
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=45.27 E-value=1.8e+02 Score=25.94 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=32.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
..|+|+...+-|-..-...||..+..+ |.+|.+++...+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~ 40 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTY 40 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCC
Confidence 367888889999999999999999877 999999997755
No 229
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=45.21 E-value=92 Score=30.06 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=34.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcC-CCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQY-NFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~-GH~Vt~~~~~~~ 51 (487)
|||++-....|++.=..++.++|.++. +.+|++++.+.+
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~ 40 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGF 40 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhH
Confidence 589999999999999999999997655 799999998743
No 230
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=45.06 E-value=42 Score=35.89 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=21.3
Q ss_pred cccccccCc------hhHHHHHhhCCceeccc
Q 011381 371 GGFLSHCGW------NSILESIVHGVPIIAWP 396 (487)
Q Consensus 371 ~~~I~HgG~------gt~~eal~~GvP~v~~P 396 (487)
+++++|.|- +.+.+|.+.++|+|+|.
T Consensus 65 gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 65 GVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred EEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 377777764 48899999999999984
No 231
>PRK14098 glycogen synthase; Provisional
Probab=44.80 E-value=36 Score=35.46 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=31.1
Q ss_pred CCCCcEEEEEcCC------CccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 8 QIPRAYVAMVPTP------GIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 8 ~~~~~~il~~~~~------~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
+++.|+|++++.- +-|=-.-.-+|.++|+++ ||+|.++.|...
T Consensus 2 ~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~-g~~v~v~~P~y~ 50 (489)
T PRK14098 2 SRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEE-GFEARIMMPKYG 50 (489)
T ss_pred CCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHC-CCeEEEEcCCCC
Confidence 3556999998742 234444567899999765 999999998653
No 232
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=44.48 E-value=2.3e+02 Score=28.84 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=22.4
Q ss_pred ccCCceEEEeCCCcchHHHHHHHhCCCcEEEe
Q 011381 115 ESTRLVALVVDPFGSAAFDVANEVGVPAYVFF 146 (487)
Q Consensus 115 ~~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~ 146 (487)
++.+||++|.... ...+|+++|||.+.+.
T Consensus 352 ~~~~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 352 LEFEPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred hhCCCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 3459999998853 4568999999988753
No 233
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=43.85 E-value=2.3e+02 Score=26.45 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=32.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
-+++...++.|-..-.+.++..++...|+.|.|++.+..
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~ 70 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP 70 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence 566777799999999999999986645999999998743
No 234
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=43.68 E-value=1.1e+02 Score=27.41 Aligned_cols=39 Identities=18% Similarity=-0.100 Sum_probs=34.2
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
++.+|++.+.++-.|-....-++..|.. .|.+|++++..
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~-~G~~vi~LG~~ 121 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRA-NGFDVIDLGRD 121 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHh-CCcEEEECCCC
Confidence 3468999999999999999999999955 59999999866
No 235
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=43.66 E-value=1.1e+02 Score=26.89 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=22.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCE--EEEEecC
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFL--VTIFIPT 49 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~--Vt~~~~~ 49 (487)
|||+|+..++. ..+..+..+|.++ +|+ +.++.+.
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~-~~~~~iv~Vit~ 36 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKAR-GHNVEIVLVITN 36 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTT-SSEEEEEEEEES
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhC-CCCceEEEEecc
Confidence 68888865544 5566777888654 887 4444433
No 236
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.51 E-value=31 Score=33.12 Aligned_cols=56 Identities=9% Similarity=0.142 Sum_probs=38.5
Q ss_pred ccccCcccccccccCchhHHHHHhh----CCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhc
Q 011381 364 VLSHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLI 439 (487)
Q Consensus 364 iL~~~~~~~~I~HgG~gt~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl 439 (487)
+...++ ++|+=||=||++.++.. ++|++.+-.. .+|..- + +.++++.+++++++
T Consensus 60 ~~~~~d--~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGFl~---~---~~~~~~~~~l~~i~ 117 (292)
T PRK03378 60 IGQQAD--LAIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGFLT---D---LDPDNALQQLSDVL 117 (292)
T ss_pred cCCCCC--EEEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCccc---c---cCHHHHHHHHHHHH
Confidence 334567 99999999999999853 6677665421 123222 2 56788899999988
Q ss_pred cC
Q 011381 440 QG 441 (487)
Q Consensus 440 ~~ 441 (487)
++
T Consensus 118 ~g 119 (292)
T PRK03378 118 EG 119 (292)
T ss_pred cC
Confidence 75
No 237
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.41 E-value=27 Score=32.97 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=36.7
Q ss_pred cCcccccccccCchhHHHHHh------hCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhcc
Q 011381 367 HGSTGGFLSHCGWNSILESIV------HGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQ 440 (487)
Q Consensus 367 ~~~~~~~I~HgG~gt~~eal~------~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~ 440 (487)
.++ ++|+-||=||++.|++ .++|++.+-.. .+|..- + +.++++.++++++++
T Consensus 35 ~~D--lvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL~---~---~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 35 NPD--IVISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFYT---D---WRPFEVDKLVIALAK 92 (265)
T ss_pred CCC--EEEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceecc---c---CCHHHHHHHHHHHHc
Confidence 456 9999999999999986 47888776531 122222 1 456777777777776
Q ss_pred C
Q 011381 441 G 441 (487)
Q Consensus 441 ~ 441 (487)
+
T Consensus 93 g 93 (265)
T PRK04885 93 D 93 (265)
T ss_pred C
Confidence 4
No 238
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=42.90 E-value=2.2e+02 Score=30.25 Aligned_cols=105 Identities=10% Similarity=0.043 Sum_probs=65.2
Q ss_pred CcEEEEEcC-----CCccChHHHHHHHHHHHhcCCCEEEEEe-cCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCC
Q 011381 11 RAYVAMVPT-----PGIGHLIPLVELAKRLVHQYNFLVTIFI-PTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDD 84 (487)
Q Consensus 11 ~~~il~~~~-----~~~GH~~p~l~La~~L~~~~GH~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (487)
+..|.++.. |..-|+.-+-.+.++-++..|.-...++ .+.. .+++
T Consensus 64 kP~IgIvns~~d~~p~h~hl~~~~~~vk~~i~~aGg~~~~~Gg~~a~-----------------cDGi------------ 114 (601)
T TIGR01196 64 RPNLAIITAYNDMLSAHQPFKNYPDLIKKALQEANAVAQVAGGVPAM-----------------CDGV------------ 114 (601)
T ss_pred CCEEEEEeccccCccccccHHHHHHHHHHHHHHCCCEeEEeCCcCcc-----------------CCCc------------
Confidence 557777754 5666777777777777666677666663 2211 1111
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHhccCCceEEE----eCCCcchHHHHHHHh-CCCcEEEecch
Q 011381 85 LPDDFQIETRITLTLVRSLSSLRDALKVLAESTRLVALV----VDPFGSAAFDVANEV-GVPAYVFFTTT 149 (487)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI----~D~~~~~~~~~A~~l-gIP~v~~~~~~ 149 (487)
..+.+- +. +...+.+.+.+.++..++...+|.+| +|=..+..+..|-.+ +||.|.+...|
T Consensus 115 -t~G~~G---M~-~SL~SRdlIA~sie~~l~~~~fDg~v~l~~CDKivPG~lMaA~r~g~lP~IfV~gGp 179 (601)
T TIGR01196 115 -TQGYDG---ME-LSLFSRDVIAMSTAIGLSHNMFDGALFLGVCDKIVPGLLIGALSFGHLPAVFVPSGP 179 (601)
T ss_pred -cCCCcc---cc-hhhhcHHHHHHHHHHHhcCCCcceeEEeccCCCCcHHHHHHHHhcCCCCEEEEeCCC
Confidence 111110 11 22234555666677777778999776 777777777788889 99999886554
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=42.73 E-value=36 Score=31.95 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
...++|+..|+.|-..=..+||.+|.+ +|+.|+|++.+..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~-~g~sv~f~~~~el 144 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLK-AGISVLFITAPDL 144 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEEHHHH
Confidence 347999999999999999999999985 5999999986643
No 240
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=42.18 E-value=1.3e+02 Score=26.91 Aligned_cols=38 Identities=21% Similarity=0.017 Sum_probs=33.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
+.+|++.+.++-.|-....-++..|.+ .|++|++.+..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~-~G~~vi~lG~~ 119 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEA-NGFEVIDLGRD 119 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHH-CCCEEEECCCC
Confidence 568999999999999999999999955 59999888754
No 241
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=42.04 E-value=33 Score=30.11 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=27.3
Q ss_pred EEEEcCCCccChHH-HHHHHHHHHhcCCCEEEEEecCC
Q 011381 14 VAMVPTPGIGHLIP-LVELAKRLVHQYNFLVTIFIPTI 50 (487)
Q Consensus 14 il~~~~~~~GH~~p-~l~La~~L~~~~GH~Vt~~~~~~ 50 (487)
|++.-.++ ||... ...+.+.|++++||+|.++.++.
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~ 38 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKA 38 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHh
Confidence 44444454 78766 88999999866799999998873
No 242
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=41.64 E-value=2.3e+02 Score=28.87 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
++..|+++..++.|-..-...||..|..+.|.+|.++....+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 356788888999999999999999996445999999988765
No 243
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=41.44 E-value=2.5e+02 Score=28.55 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=21.6
Q ss_pred cCCceEEEeCCCcchHHHHHHHhCCCcEEEe
Q 011381 116 STRLVALVVDPFGSAAFDVANEVGVPAYVFF 146 (487)
Q Consensus 116 ~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~ 146 (487)
+.+||++|.+.. ...+|+++|+|++.+.
T Consensus 368 ~~~pdliig~~~---~~~~a~~~gip~~~~~ 395 (430)
T cd01981 368 RTEPELIFGTQM---ERHIGKRLDIPCAVIS 395 (430)
T ss_pred hhCCCEEEecch---hhHHHHHcCCCEEEEe
Confidence 349999999973 3446899999988653
No 244
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.24 E-value=2.9e+02 Score=28.05 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
++..|+|+..++.|-..-...||..|..+ |..|.+++...+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~-GkkVglI~aDt~ 280 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHS 280 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc-CCcEEEEecCCc
Confidence 34588999999999999999999999765 999999987654
No 245
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=41.02 E-value=48 Score=30.72 Aligned_cols=39 Identities=18% Similarity=0.049 Sum_probs=20.0
Q ss_pred CCCCcEEEEEc-CCCccChHHHHHHHHHHHhcCCCEEEEEec
Q 011381 8 QIPRAYVAMVP-TPGIGHLIPLVELAKRLVHQYNFLVTIFIP 48 (487)
Q Consensus 8 ~~~~~~il~~~-~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~ 48 (487)
...+++|+++. .|--= ..-+-.....++++ ||+|++++-
T Consensus 7 ~~~~~~vL~v~aHPDDe-~~g~ggtla~~~~~-G~~V~v~~l 46 (237)
T COG2120 7 MLDPLRVLVVFAHPDDE-EIGCGGTLAKLAAR-GVEVTVVCL 46 (237)
T ss_pred cccCCcEEEEecCCcch-hhccHHHHHHHHHC-CCeEEEEEc
Confidence 34456776654 33111 12222233334465 999999874
No 246
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=40.90 E-value=40 Score=30.21 Aligned_cols=39 Identities=13% Similarity=0.021 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCC
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~ 50 (487)
.++|++.-.++.|=+.-...|.+.|.++ ||+|.++.++.
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~-G~~V~vv~T~a 43 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDE-GAEVTPIVSYT 43 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhC-cCEEEEEECHh
Confidence 3477777766555444479999999765 99999998773
No 247
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.82 E-value=36 Score=32.28 Aligned_cols=57 Identities=9% Similarity=0.114 Sum_probs=37.9
Q ss_pred ccccccCcccccccccCchhHHHHHhh----CCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHH
Q 011381 362 AQVLSHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKG 437 (487)
Q Consensus 362 ~~iL~~~~~~~~I~HgG~gt~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~ 437 (487)
..+...++ ++|+=||=||++.+.+. ++|++.+-.. .+|...+ ++++++.+++.+
T Consensus 37 ~~~~~~~d--~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~~------~~~~~~~~~l~~ 94 (272)
T PRK02231 37 EEIGQRAQ--LAIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLTD------IDPKNAYEQLEA 94 (272)
T ss_pred HHhCcCCC--EEEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCccccc------CCHHHHHHHHHH
Confidence 34444567 99999999999988653 6787766421 1333222 456777777777
Q ss_pred hcc
Q 011381 438 LIQ 440 (487)
Q Consensus 438 vl~ 440 (487)
++.
T Consensus 95 ~~~ 97 (272)
T PRK02231 95 CLE 97 (272)
T ss_pred HHh
Confidence 776
No 248
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=40.50 E-value=2.7e+02 Score=28.39 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=21.7
Q ss_pred cCCceEEEeCCCcchHHHHHHHhCCCcEEE
Q 011381 116 STRLVALVVDPFGSAAFDVANEVGVPAYVF 145 (487)
Q Consensus 116 ~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~ 145 (487)
..+||++|.... ...+|+++|||++.+
T Consensus 375 ~~~pDliiG~s~---~~~~a~~~gip~v~~ 401 (435)
T cd01974 375 TEPVDLLIGNTY---GKYIARDTDIPLVRF 401 (435)
T ss_pred hcCCCEEEECcc---HHHHHHHhCCCEEEe
Confidence 348999999873 467899999998754
No 249
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=40.26 E-value=47 Score=27.43 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=25.5
Q ss_pred CCcccCCCCCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 1 METQKSKQIPRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 1 ~~~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
|.+.. ++..+++|.|+-.+--|- .||++|.++ ||+|.-+...
T Consensus 1 ~~~~~-~~~~~l~I~iIGaGrVG~-----~La~aL~~a-g~~v~~v~sr 42 (127)
T PF10727_consen 1 MNTPA-TQAARLKIGIIGAGRVGT-----ALARALARA-GHEVVGVYSR 42 (127)
T ss_dssp ------------EEEEECTSCCCC-----HHHHHHHHT-TSEEEEESSC
T ss_pred CCccc-cCCCccEEEEECCCHHHH-----HHHHHHHHC-CCeEEEEEeC
Confidence 44443 567899999999887774 689999776 9999877654
No 250
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.25 E-value=1.1e+02 Score=29.43 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=38.4
Q ss_pred cCcccccccccCchhHHHHHhh----CCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccC
Q 011381 367 HGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 367 ~~~~~~~I~HgG~gt~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~ 441 (487)
.++ ++|+=||-||+++++.. ++|++.+... + +|.. .+ ++++++.+++.+++++
T Consensus 62 ~~d--~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-----------~---lGFl---~~---~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 62 VCD--LVIVVGGDGSLLGAARALARHNVPVLGINRG-----------R---LGFL---TD---IRPDELEFKLAEVLDG 118 (295)
T ss_pred CCC--EEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-----------c---cccc---cc---CCHHHHHHHHHHHHcC
Confidence 466 99999999999999753 6677766641 1 2322 12 6788999999999875
No 251
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=40.13 E-value=51 Score=30.94 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=27.0
Q ss_pred HHHHHHHHhccCCceEEEeCCCcc------hHHHHHHHhCCCcEEEecc
Q 011381 106 LRDALKVLAESTRLVALVVDPFGS------AAFDVANEVGVPAYVFFTT 148 (487)
Q Consensus 106 l~~~l~~~~~~~~~D~VI~D~~~~------~~~~~A~~lgIP~v~~~~~ 148 (487)
+...+++. +||+|++-..+. -++.+|+.||+|++.+...
T Consensus 104 La~ai~~~----~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 104 LAAAAQKA----GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHh----CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 44455543 799999655443 2457999999999976543
No 252
>PRK12342 hypothetical protein; Provisional
Probab=39.80 E-value=43 Score=31.38 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=27.1
Q ss_pred HHHHHHHHhccCCceEEEeCCCcch------HHHHHHHhCCCcEEEecc
Q 011381 106 LRDALKVLAESTRLVALVVDPFGSA------AFDVANEVGVPAYVFFTT 148 (487)
Q Consensus 106 l~~~l~~~~~~~~~D~VI~D~~~~~------~~~~A~~lgIP~v~~~~~ 148 (487)
+...++.. +||+|++--.+.. ++.+|+.||+|++.+...
T Consensus 101 La~~i~~~----~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 101 LAAAIEKI----GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHh----CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 44455543 6999997554433 457999999999976543
No 253
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=39.70 E-value=1.2e+02 Score=24.62 Aligned_cols=36 Identities=17% Similarity=-0.032 Sum_probs=31.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
||++.+.++-.|..-..-++..|.. .|++|.+.++.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~-~G~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRD-AGFEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHH-CCCEEEECCCC
Confidence 5889999999999999999999965 49999998865
No 254
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=39.53 E-value=33 Score=29.62 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=20.0
Q ss_pred ccccccCc------hhHHHHHhhCCceecccc
Q 011381 372 GFLSHCGW------NSILESIVHGVPIIAWPL 397 (487)
Q Consensus 372 ~~I~HgG~------gt~~eal~~GvP~v~~P~ 397 (487)
++++|.|- +.+.+|...++|||++.-
T Consensus 62 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 62 ALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 55666553 478899999999999963
No 255
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=39.53 E-value=2.4e+02 Score=24.00 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=23.3
Q ss_pred CCCccChHHHHHHHHHHHhcCCCEEEEE
Q 011381 19 TPGIGHLIPLVELAKRLVHQYNFLVTIF 46 (487)
Q Consensus 19 ~~~~GH~~p~l~La~~L~~~~GH~Vt~~ 46 (487)
-+..|-..-.+.|++.|+++ |.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~-g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKA-GYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHC-CCcEEEE
Confidence 46788899999999999765 9999886
No 256
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=39.00 E-value=2.7e+02 Score=24.42 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=28.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEE
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIF 46 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~ 46 (487)
--|.+++..+.|-..-.+.+|.+.+.. |++|.++
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~-g~~v~iv 39 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGH-GKKVGVI 39 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEE
Confidence 357777779999999999999999765 9999654
No 257
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=38.78 E-value=48 Score=31.81 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=37.5
Q ss_pred ccCcccccccccCchhHHHHHhh----CCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccC
Q 011381 366 SHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 366 ~~~~~~~~I~HgG~gt~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~ 441 (487)
..++ ++|+-||=||+++++.. ++|++.+-. - .+|... + ++.+++.+++.+++.+
T Consensus 62 ~~~d--~vi~~GGDGt~l~~~~~~~~~~~pilGIn~-----------G---~lGFL~---~---~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 62 ARAD--LAVVLGGDGTMLGIGRQLAPYGVPLIGINH-----------G---RLGFIT---D---IPLDDMQETLPPMLAG 119 (291)
T ss_pred cCCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEcC-----------C---Cccccc---c---CCHHHHHHHHHHHHcC
Confidence 3566 99999999999999874 567665542 1 123222 2 5678888888888765
No 258
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=38.46 E-value=65 Score=27.79 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=25.5
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEEE
Q 011381 281 VLFVCFGSGGTLSQEQLNELALGLEMSGQRFLWV 314 (487)
Q Consensus 281 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 314 (487)
.+|+++||-.....+.++..+.++.+.+.--|+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 7999999976656667888888888887533433
No 259
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=37.94 E-value=2.8e+02 Score=28.46 Aligned_cols=106 Identities=15% Similarity=0.179 Sum_probs=59.5
Q ss_pred EEEEcC-CCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCCCCcchH
Q 011381 14 VAMVPT-PGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLPDDFQIE 92 (487)
Q Consensus 14 il~~~~-~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (487)
|++... ..-|-..-...|+++|+++ |++|..+-+... ...+ ....... +. +. ..++. +.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~-G~~V~~fK~g~d--~~D~--~~~~~~~----g~-----~~---~~ld~---~~ 61 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRR-KLRVQPFKVGPD--YIDP--MFHTQAT----GR-----PS---RNLDS---FF 61 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC-CCceeEEccCCC--CCCH--HHHHHHh----CC-----ch---hhCCc---cc
Confidence 444433 4578899999999999765 999998876432 0111 1111000 10 00 01100 00
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhccCCceEEEeCCCc------------chHHHHHHHhCCCcEEEecch
Q 011381 93 TRITLTLVRSLSSLRDALKVLAESTRLVALVVDPFG------------SAAFDVANEVGVPAYVFFTTT 149 (487)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D~~~------------~~~~~~A~~lgIP~v~~~~~~ 149 (487)
...+.+.+.+.++ ..+.|++|.+... .....+|+.+++|+|.+....
T Consensus 62 --------~~~~~i~~~~~~~--~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 62 --------MSEAQIQECFHRH--SKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred --------CCHHHHHHHHHHh--cccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 1233444445544 3467999966541 124579999999999888654
No 260
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.38 E-value=64 Score=31.07 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=38.9
Q ss_pred ccCcccccccccCchhHHHHHhh----CCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccC
Q 011381 366 SHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 366 ~~~~~~~~I~HgG~gt~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~ 441 (487)
..++ ++|+=||=||++.|.+. ++|++.+-.. .+|...+ ++.+++.+++++++++
T Consensus 67 ~~~D--~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~~------~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 67 QYCD--LVAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLTQ------IPREYMTDKLLPVLEG 124 (296)
T ss_pred cCCC--EEEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEeec------cCHHHHHHHHHHHHcC
Confidence 3567 99999999999999753 6787766521 1333332 5678888899888875
No 261
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=37.06 E-value=65 Score=31.52 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=26.3
Q ss_pred HHHHHHhccCCceEEEeCCCcchH-------H---HHHHHhCCCcEEEe
Q 011381 108 DALKVLAESTRLVALVVDPFGSAA-------F---DVANEVGVPAYVFF 146 (487)
Q Consensus 108 ~~l~~~~~~~~~D~VI~D~~~~~~-------~---~~A~~lgIP~v~~~ 146 (487)
+.+.+++++.+||++|+-+.+-++ . .+.++++||.+.-.
T Consensus 70 ~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 70 KKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 334444455699999998865422 1 36678999988654
No 262
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=37.02 E-value=83 Score=30.69 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=29.1
Q ss_pred EcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 17 VPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 17 ~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
++.++.|-+--.+.||++|.+| |..+-+++-.+-
T Consensus 55 ltvGGtGKTP~vi~la~~l~~r-G~~~gvvSRGYg 88 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQAR-GVRVGVVSRGYG 88 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhc-CCeeEEEecCcC
Confidence 5679999999999999999775 999999986543
No 263
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=36.91 E-value=44 Score=32.40 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
.+|+|+++..++.|= .+|..|+++ ||+|+++...
T Consensus 4 ~~m~I~IiG~GaiG~-----~lA~~L~~~-g~~V~~~~r~ 37 (313)
T PRK06249 4 ETPRIGIIGTGAIGG-----FYGAMLARA-GFDVHFLLRS 37 (313)
T ss_pred cCcEEEEECCCHHHH-----HHHHHHHHC-CCeEEEEEeC
Confidence 357999999888884 578889765 9999999864
No 264
>PRK14099 glycogen synthase; Provisional
Probab=36.82 E-value=52 Score=34.23 Aligned_cols=98 Identities=9% Similarity=0.089 Sum_probs=52.4
Q ss_pred ccCccccccc---ccCc-hhHHHHHhhCCceecccccc--cchhhhHhhhc--ccceeEEEeecCCCccCHHHHHHHHHH
Q 011381 366 SHGSTGGFLS---HCGW-NSILESIVHGVPIIAWPLYS--EQKMNAVLLTD--DLKVSFRVKVNENGLVGREDIANYAKG 437 (487)
Q Consensus 366 ~~~~~~~~I~---HgG~-gt~~eal~~GvP~v~~P~~~--DQ~~na~~v~~--~~G~G~~l~~~~~~~~~~~~l~~av~~ 437 (487)
+.+| +||. +=|. .+.+||+++|+|.|+....+ |--.......+ .-+.|+.++.. +++.+.+++.+
T Consensus 368 a~aD--ifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~-----d~~~La~ai~~ 440 (485)
T PRK14099 368 AGAD--ALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPV-----TADALAAALRK 440 (485)
T ss_pred hcCC--EEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCC-----CHHHHHHHHHH
Confidence 3466 6653 3333 47789999998776654432 21111100001 01578888764 58999999987
Q ss_pred ---hccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 011381 438 ---LIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIW 479 (487)
Q Consensus 438 ---vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 479 (487)
+++| +..+++..+ ... ..+-|-++.+++.++-.
T Consensus 441 a~~l~~d---~~~~~~l~~---~~~---~~~fSw~~~a~~y~~lY 476 (485)
T PRK14099 441 TAALFAD---PVAWRRLQR---NGM---TTDVSWRNPAQHYAALY 476 (485)
T ss_pred HHHHhcC---HHHHHHHHH---Hhh---hhcCChHHHHHHHHHHH
Confidence 5666 443332222 211 13555555555555443
No 265
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.72 E-value=58 Score=31.51 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=39.8
Q ss_pred cccCcccccccccCchhHHHHHhh----CCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhcc
Q 011381 365 LSHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQ 440 (487)
Q Consensus 365 L~~~~~~~~I~HgG~gt~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~ 440 (487)
...++ ++|+=||=||++.|.+. ++|++.+... .+|...+ +.++++.+++.++++
T Consensus 70 ~~~~D--~vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~~------~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 70 ADGCE--LVLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLAE------AEAEDLDEAVERVVD 127 (306)
T ss_pred ccCCC--EEEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceecc------CCHHHHHHHHHHHHc
Confidence 34567 99999999999999764 7888777631 2333332 557888888888887
Q ss_pred C
Q 011381 441 G 441 (487)
Q Consensus 441 ~ 441 (487)
+
T Consensus 128 g 128 (306)
T PRK03372 128 R 128 (306)
T ss_pred C
Confidence 5
No 266
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=36.55 E-value=3.9e+02 Score=25.60 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCccccccccc
Q 011381 298 NELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHC 377 (487)
Q Consensus 298 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~Hg 377 (487)
..+++.++..+.+++...+...- +++.|...++ ..-+-=|++ +.=...
T Consensus 159 ~~~~~~l~~~~~Dlivlagym~i-------------------l~~~~l~~~~-----------~~iiNiHpS--lLP~f~ 206 (289)
T PRK13010 159 AQILDLIETSGAELVVLARYMQV-------------------LSDDLSRKLS-----------GRAINIHHS--FLPGFK 206 (289)
T ss_pred HHHHHHHHHhCCCEEEEehhhhh-------------------CCHHHHhhcc-----------CCceeeCcc--cCCCCC
Confidence 34666677777777776665433 5555543332 223334555 555567
Q ss_pred CchhHHHHHhhCCceecccccc--cchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHH
Q 011381 378 GWNSILESIVHGVPIIAWPLYS--EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALK 455 (487)
Q Consensus 378 G~gt~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~ 455 (487)
|.+....|+.+|+...++-++. +..+...-+.. .-+.+..+ -|.++|.+.+.++-. .-|-+..+.+.
T Consensus 207 G~~~~~~ai~~G~k~tG~TvH~v~~~lD~GpII~Q---~~v~V~~~----dt~e~L~~r~~~~E~----~~l~~ai~~~~ 275 (289)
T PRK13010 207 GARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQ---DVERVDHS----YSPEDLVAKGRDVEC----LTLARAVKAFI 275 (289)
T ss_pred CCCHHHHHHHcCCCeEEEEEEEEcCCCCCCCceEE---EEEEcCCC----CCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 9999999999999998877642 33343333333 23334444 478999988887542 34555554443
No 267
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=36.52 E-value=2.4e+02 Score=28.94 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=28.3
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 13 YVAMVPT-PGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 13 ~il~~~~-~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
+|++... ..-|-..-...|+++|+++ |++|..+-+.
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~-G~~V~~fK~G 41 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRR-GLRVQPFKVG 41 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhC-CCCcceeecC
Confidence 4655544 5678999999999999765 9999888764
No 268
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=35.92 E-value=2.3e+02 Score=22.89 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=10.2
Q ss_pred HHHHHhcCCCEEEEEec
Q 011381 32 AKRLVHQYNFLVTIFIP 48 (487)
Q Consensus 32 a~~L~~~~GH~Vt~~~~ 48 (487)
...+.++ |++|++++-
T Consensus 18 i~~~~~~-g~~v~vv~~ 33 (128)
T PF02585_consen 18 IAKLAEA-GHRVVVVTL 33 (128)
T ss_dssp HHHHHHT-T-EEEEEEC
T ss_pred HHHHHhc-CCeEEEEEe
Confidence 3455565 999988774
No 269
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=35.80 E-value=3.7e+02 Score=25.06 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=28.2
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhcCCCEEEEEe
Q 011381 13 YVAMVPT-PGIGHLIPLVELAKRLVHQYNFLVTIFI 47 (487)
Q Consensus 13 ~il~~~~-~~~GH~~p~l~La~~L~~~~GH~Vt~~~ 47 (487)
+|++... ++-|-..=.-.||..|++. |++|..+=
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~-G~~VlaID 37 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARL-GESVLAID 37 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHC-CCcEEEEe
Confidence 5666555 8999999999999999765 99998764
No 270
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=35.65 E-value=1.1e+02 Score=30.16 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=22.7
Q ss_pred CcccccccccCchh---HHHHHhhCCceecc
Q 011381 368 GSTGGFLSHCGWNS---ILESIVHGVPIIAW 395 (487)
Q Consensus 368 ~~~~~~I~HgG~gt---~~eal~~GvP~v~~ 395 (487)
++ ++|++||.=| ...|...|+|.++.
T Consensus 92 Pd--vvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 92 PD--VIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred CC--EEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 66 9999999986 88999999999763
No 271
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.63 E-value=1.6e+02 Score=25.49 Aligned_cols=55 Identities=11% Similarity=0.210 Sum_probs=45.2
Q ss_pred chhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Q 011381 401 QKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAA 459 (487)
Q Consensus 401 Q~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~ 459 (487)
+..|++..++ .|.=..+-.+. .+.+.|.++..+-|+|++..+++....++.+..+
T Consensus 110 ~~LN~aY~~r-FgfPfI~aVkg---~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 110 TELNAAYVER-FGFPFIIAVKG---NTKDTILAAFERRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred HHHHHHHHHh-cCCceEEeecC---CCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 4679999999 99998877766 7899999999999999777788888777766543
No 272
>PRK05858 hypothetical protein; Provisional
Probab=35.52 E-value=72 Score=33.71 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=20.4
Q ss_pred ccccccCc------hhHHHHHhhCCceeccc
Q 011381 372 GFLSHCGW------NSILESIVHGVPIIAWP 396 (487)
Q Consensus 372 ~~I~HgG~------gt~~eal~~GvP~v~~P 396 (487)
+++.|.|- +.+.+|...++|||++.
T Consensus 70 v~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 70 VAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred EEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 66666664 48899999999999986
No 273
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.25 E-value=53 Score=31.56 Aligned_cols=56 Identities=20% Similarity=0.314 Sum_probs=39.3
Q ss_pred ccccCcccccccccCchhHHHHHhh----CCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhc
Q 011381 364 VLSHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLI 439 (487)
Q Consensus 364 iL~~~~~~~~I~HgG~gt~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl 439 (487)
+...++ ++|+=||=||++.+.+. ++|++.+-.. .+|..- + +.++++.+++++++
T Consensus 61 ~~~~~d--lvi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt---~---~~~~~~~~~l~~i~ 118 (292)
T PRK01911 61 LDGSAD--MVISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGFLA---T---VSKEEIEETIDELL 118 (292)
T ss_pred cccCCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCccc---c---cCHHHHHHHHHHHH
Confidence 334567 99999999999999874 6787766531 123222 1 56788888998888
Q ss_pred cC
Q 011381 440 QG 441 (487)
Q Consensus 440 ~~ 441 (487)
++
T Consensus 119 ~g 120 (292)
T PRK01911 119 NG 120 (292)
T ss_pred cC
Confidence 76
No 274
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=35.09 E-value=1.9e+02 Score=26.34 Aligned_cols=39 Identities=13% Similarity=0.017 Sum_probs=34.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
.+.+|++.+.++-.|-....-++..|.. +|++|.+.+..
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~-~G~~Vi~LG~~ 125 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSN-NGYEVIDLGVM 125 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHh-CCCEEEECCCC
Confidence 4568999999999999999999999955 59999999865
No 275
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=34.93 E-value=50 Score=30.74 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=21.9
Q ss_pred HhccCCceEEE--eCCCcch----HHHHHHHhCCCcEEE
Q 011381 113 LAESTRLVALV--VDPFGSA----AFDVANEVGVPAYVF 145 (487)
Q Consensus 113 ~~~~~~~D~VI--~D~~~~~----~~~~A~~lgIP~v~~ 145 (487)
++++.+.|+|| ++++..- +..+|+..|||++.+
T Consensus 61 ~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 61 FLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred HHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 33345999999 4443321 235899999998874
No 276
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=34.66 E-value=93 Score=32.97 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=21.6
Q ss_pred cccccccCch------hHHHHHhhCCceeccc
Q 011381 371 GGFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 371 ~~~I~HgG~g------t~~eal~~GvP~v~~P 396 (487)
+++++|.|-| .+.+|...++|+|++-
T Consensus 73 gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 73 GICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred EEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3788888754 7899999999999884
No 277
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=34.55 E-value=2.2e+02 Score=30.26 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHhccCCceEEE----eCCCcchHHHHHHHhCCCcEEEecch
Q 011381 102 SLSSLRDALKVLAESTRLVALV----VDPFGSAAFDVANEVGVPAYVFFTTT 149 (487)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~D~VI----~D~~~~~~~~~A~~lgIP~v~~~~~~ 149 (487)
+.+.+.+.++..++.+.+|-+| +|=..+..+..|.++|||.|++...+
T Consensus 95 SRelIAdsiE~~~~a~~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGp 146 (615)
T PRK12448 95 SRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGP 146 (615)
T ss_pred hHHHHHHHHHHHhhCCCcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCC
Confidence 4455667777777788999777 67766777778889999999887553
No 278
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=34.43 E-value=3.2e+02 Score=28.67 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHhccCCceEEE----eCCCcchHHHHHHHhCCCcEEEecch
Q 011381 102 SLSSLRDALKVLAESTRLVALV----VDPFGSAAFDVANEVGVPAYVFFTTT 149 (487)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~D~VI----~D~~~~~~~~~A~~lgIP~v~~~~~~ 149 (487)
+.+.+.+.++..++.+.+|.+| +|-..+..+..|.++|||.|++...+
T Consensus 73 SRelIAdsiE~~~~~~~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGp 124 (535)
T TIGR00110 73 SREIIADSVETMVNAHRFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGP 124 (535)
T ss_pred hHHHHHHHHHHHHhcCCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 4455667777777778999877 67777777778889999999887553
No 279
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=34.12 E-value=3.7e+02 Score=24.58 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=29.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEec
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIP 48 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~ 48 (487)
=|.+..+|+.|-..-.-.||++|.++ +|.|.-.+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~-i~~vi~l~k 37 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE-IWRVIHLEK 37 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh-hhhccccch
Confidence 36777789999999999999999665 999976654
No 280
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=33.82 E-value=51 Score=31.87 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=30.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 14 VAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 14 il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
|+|..-++-|-..-..++|.+++++ |++|.+++..+.
T Consensus 4 ~~~~GKGGVGKTT~aaA~A~~~A~~-G~rtLlvS~Dpa 40 (305)
T PF02374_consen 4 LFFGGKGGVGKTTVAAALALALARR-GKRTLLVSTDPA 40 (305)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-TS-EEEEESSTT
T ss_pred EEEecCCCCCcHHHHHHHHHHHhhC-CCCeeEeecCCC
Confidence 3444558999999999999999876 999999998765
No 281
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=33.81 E-value=1.2e+02 Score=27.70 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=32.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
.--+++...++.|-..-...++...+++ |..|.|++.+..
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~~ 64 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTENT 64 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCCC
Confidence 3456777889999999999998887665 999999998743
No 282
>PRK09054 phosphogluconate dehydratase; Validated
Probab=33.80 E-value=3.3e+02 Score=28.99 Aligned_cols=49 Identities=14% Similarity=-0.007 Sum_probs=36.6
Q ss_pred HhHHHHHHHHHHHhccCCceEEE----eCCCcchHHHHHHHh-CCCcEEEecch
Q 011381 101 RSLSSLRDALKVLAESTRLVALV----VDPFGSAAFDVANEV-GVPAYVFFTTT 149 (487)
Q Consensus 101 ~~~~~l~~~l~~~~~~~~~D~VI----~D~~~~~~~~~A~~l-gIP~v~~~~~~ 149 (487)
.+.+.+.+.++..++...+|.+| +|=..+..+..|-.+ ++|.|++...|
T Consensus 127 ~SRdlIA~sie~~l~~~~fDg~v~lg~CDKivPG~lMaA~r~g~lP~ifV~gGp 180 (603)
T PRK09054 127 FSRDVIAMSTAVALSHNMFDAALLLGVCDKIVPGLLIGALSFGHLPAIFVPAGP 180 (603)
T ss_pred hhHHHHHHHHHHHhhcCCcceEEEeccCCCCcHHHHHHHHhcCCCCEEEEeCCC
Confidence 34555666777777778999776 777777777788889 69999886553
No 283
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=33.60 E-value=1.4e+02 Score=31.85 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=21.9
Q ss_pred ccccccccCch------hHHHHHhhCCceeccc
Q 011381 370 TGGFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 370 ~~~~I~HgG~g------t~~eal~~GvP~v~~P 396 (487)
.+++++|.|-| .+.+|...++|||+|.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33778887744 7889999999999996
No 284
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=33.27 E-value=91 Score=33.08 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=20.6
Q ss_pred ccccccCc------hhHHHHHhhCCceeccc
Q 011381 372 GFLSHCGW------NSILESIVHGVPIIAWP 396 (487)
Q Consensus 372 ~~I~HgG~------gt~~eal~~GvP~v~~P 396 (487)
++++|.|- +.+.+|.+.++|||++-
T Consensus 73 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 103 (561)
T PRK06048 73 VCVATSGPGATNLVTGIATAYMDSVPIVALT 103 (561)
T ss_pred EEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 67777664 48899999999999985
No 285
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.24 E-value=47 Score=31.65 Aligned_cols=53 Identities=23% Similarity=0.255 Sum_probs=35.9
Q ss_pred cCcccccccccCchhHHHHHh---hCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccC
Q 011381 367 HGSTGGFLSHCGWNSILESIV---HGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 367 ~~~~~~~I~HgG~gt~~eal~---~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~ 441 (487)
.++ ++|.-||-||+.+++. .++|++++|... + |..- + +.++++.+++.+++++
T Consensus 57 ~~d--~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~------------l--GFl~---~---~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 57 DVD--FIIAIGGDGTILRIEHKTKKDIPILGINMGT------------L--GFLT---E---VEPEETFFALSRLLEG 112 (277)
T ss_pred CCC--EEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC------------C--Cccc---c---CCHHHHHHHHHHHHcC
Confidence 456 9999999999999984 356877777421 1 2111 1 4567777888777765
No 286
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=33.18 E-value=72 Score=30.10 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=24.4
Q ss_pred eEEEEEeCCCcCCCHH-HHHHHHHHHHHc--CCceEEEEeCC
Q 011381 280 SVLFVCFGSGGTLSQE-QLNELALGLEMS--GQRFLWVAKSP 318 (487)
Q Consensus 280 ~~v~vs~Gs~~~~~~~-~~~~~~~al~~~--~~~~i~~~~~~ 318 (487)
.+|.+||||......+ .+..+.+.+++. +.+|-|.+.++
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 4889999997544443 677777777766 67888887764
No 287
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=32.97 E-value=3.4e+02 Score=25.98 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=72.6
Q ss_pred HHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcccccccccC
Q 011381 299 ELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHCG 378 (487)
Q Consensus 299 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~HgG 378 (487)
.+++.++..+.+++...+...- +|+.|.+.. +...+-=|++ +.=.+.|
T Consensus 156 ~~~~~l~~~~~Dlivlagy~~i-------------------l~~~~l~~~-----------~~~iiNiHpS--LLP~~rG 203 (286)
T PRK13011 156 QVLDVVEESGAELVVLARYMQV-------------------LSPELCRKL-----------AGRAINIHHS--FLPGFKG 203 (286)
T ss_pred HHHHHHHHhCcCEEEEeChhhh-------------------CCHHHHhhc-----------cCCeEEeccc--cCCCCCC
Confidence 4667777777888877776543 677655333 3333445777 7777789
Q ss_pred chhHHHHHhhCCceecccccc--cchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHH
Q 011381 379 WNSILESIVHGVPIIAWPLYS--EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALK 455 (487)
Q Consensus 379 ~gt~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~ 455 (487)
.+.+..|+.+|+...++-++. +..+-..-+.. .-+.+..+ -|.++|.+.+.++- - +-|-+..+.+.
T Consensus 204 ~~~~~~ai~~G~~~tG~TvH~v~~~~D~G~Ii~Q---~~v~I~~~----dt~~~L~~r~~~~E-~---~~~~~ai~~~~ 271 (286)
T PRK13011 204 AKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQ---DVERVDHA----YSPEDLVAKGRDVE-C---LTLARAVKAHI 271 (286)
T ss_pred CcHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEE---EEEEcCCC----CCHHHHHHHHHHHH-H---HHHHHHHHHHH
Confidence 999999999999998777642 22222222222 33445544 48999999988743 2 45655555544
No 288
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=32.90 E-value=3.2e+02 Score=23.49 Aligned_cols=38 Identities=21% Similarity=0.106 Sum_probs=25.0
Q ss_pred HHHHhccCCceEEEeCCCcc---hHHHHHHHhCCCcEEEec
Q 011381 110 LKVLAESTRLVALVVDPFGS---AAFDVANEVGVPAYVFFT 147 (487)
Q Consensus 110 l~~~~~~~~~D~VI~D~~~~---~~~~~A~~lgIP~v~~~~ 147 (487)
+.+++++.+||+|+.-.-.. .++.+|.++|.|++.-..
T Consensus 75 l~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 75 LVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred HHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 33333344899999655333 345799999999886433
No 289
>PRK05920 aromatic acid decarboxylase; Validated
Probab=32.90 E-value=65 Score=29.12 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
.+||++.-.++.+= +=...+.+.|.+. ||+|+++.++
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~-g~~V~vi~T~ 39 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAA-DYEVHLVISK 39 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHC-CCEEEEEECh
Confidence 45777776665554 7889999999765 9999999877
No 290
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=32.88 E-value=2.7e+02 Score=25.33 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=34.0
Q ss_pred cchhhcccCCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHHcCCceEE
Q 011381 267 LECLKWLDEQPSESVLFVCFGSGGTLSQEQLNELALGLEMSGQRFLW 313 (487)
Q Consensus 267 ~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 313 (487)
+.+.+|+... .+.+.||=+.|.........++..++|++.|..+.-
T Consensus 22 ~~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~ 67 (224)
T COG3340 22 PFIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSE 67 (224)
T ss_pred HHHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeeee
Confidence 4445566554 356999998887666677788899999999987653
No 291
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=32.82 E-value=3.1e+02 Score=27.54 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=34.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCC-CEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCC
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYN-FLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLP 78 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~G-H~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (487)
++|+++..+.-|+ ..|.-|+++ | ++|+++.-... ...++...-...+++..+.
T Consensus 2 ~~ilviGaG~Vg~-----~va~~la~~-~d~~V~iAdRs~~--------~~~~i~~~~~~~v~~~~vD 55 (389)
T COG1748 2 MKILVIGAGGVGS-----VVAHKLAQN-GDGEVTIADRSKE--------KCARIAELIGGKVEALQVD 55 (389)
T ss_pred CcEEEECCchhHH-----HHHHHHHhC-CCceEEEEeCCHH--------HHHHHHhhccccceeEEec
Confidence 5788887766664 578888776 8 99999985533 4555544323345555544
No 292
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=32.60 E-value=1.3e+02 Score=28.17 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=21.2
Q ss_pred cCCceEEEeCCCcchH----HHHHHHhCCCcEEE
Q 011381 116 STRLVALVVDPFGSAA----FDVANEVGVPAYVF 145 (487)
Q Consensus 116 ~~~~D~VI~D~~~~~~----~~~A~~lgIP~v~~ 145 (487)
+.+.|+||+=-....+ ..+|..+|||++++
T Consensus 192 ~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 192 QYGIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred HcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 3499999954432222 25999999998875
No 293
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=32.42 E-value=74 Score=26.83 Aligned_cols=37 Identities=22% Similarity=0.085 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEe
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFI 47 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~ 47 (487)
++.||++.+.+.-||=.-.--++++|+.. |.+|...+
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~-GfeVi~~g 47 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADA-GFEVINLG 47 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhC-CceEEecC
Confidence 46799999999999999999999999765 99997654
No 294
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=32.30 E-value=65 Score=31.05 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=54.5
Q ss_pred Cce-eccCCC---cccccccCcccccccc--cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCc
Q 011381 352 GLV-VPSWAP---QAQVLSHGSTGGFLSH--CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGL 425 (487)
Q Consensus 352 ~v~-~~~~~p---q~~iL~~~~~~~~I~H--gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
++. +..++| ..++|+.||++.|+|+ =|.||++-.++.|+|+++-- +=++|-... + .|+-+-.+.+.
T Consensus 207 ~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqdl~-e-~gv~Vlf~~d~--- 278 (322)
T PRK02797 207 NFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQDLT-E-QGLPVLFTGDD--- 278 (322)
T ss_pred cEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHHHH-h-CCCeEEecCCc---
Confidence 443 466666 5679999999888886 58999999999999998653 223444333 3 46666555555
Q ss_pred cCHHHHHHHHHHh
Q 011381 426 VGREDIANYAKGL 438 (487)
Q Consensus 426 ~~~~~l~~av~~v 438 (487)
++...++++=+++
T Consensus 279 L~~~~v~e~~rql 291 (322)
T PRK02797 279 LDEDIVREAQRQL 291 (322)
T ss_pred ccHHHHHHHHHHH
Confidence 7777777664443
No 295
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=32.20 E-value=60 Score=28.85 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=30.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
||++.-.++.|=+.-.+.+.++|.+. |++|+++.++
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~-g~~V~vI~S~ 37 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDE-GAEVTPIVSE 37 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhC-cCEEEEEEch
Confidence 67777778888777778999999765 9999998877
No 296
>PRK04940 hypothetical protein; Provisional
Probab=32.19 E-value=1.1e+02 Score=26.95 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=24.0
Q ss_pred CceEEEeCCCc-chHHHHHHHhCCCcEEEecc
Q 011381 118 RLVALVVDPFG-SAAFDVANEVGVPAYVFFTT 148 (487)
Q Consensus 118 ~~D~VI~D~~~-~~~~~~A~~lgIP~v~~~~~ 148 (487)
+++++|...+. +|+.-+|+++|+|.|.+.|+
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 56788876654 45667999999999988765
No 297
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=31.95 E-value=35 Score=29.27 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=24.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTI 50 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~ 50 (487)
+|.++..+..|+ ++|..|+.+ ||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHC-TEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHc-CCEEEEEeccH
Confidence 366776666665 789999876 99999998763
No 298
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=31.94 E-value=89 Score=33.11 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=20.8
Q ss_pred ccccccCc------hhHHHHHhhCCceeccc
Q 011381 372 GFLSHCGW------NSILESIVHGVPIIAWP 396 (487)
Q Consensus 372 ~~I~HgG~------gt~~eal~~GvP~v~~P 396 (487)
++++|.|- +.+++|...++|+|+|-
T Consensus 67 v~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 67 VVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred EEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 77777764 48899999999999995
No 299
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.88 E-value=67 Score=31.09 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=38.2
Q ss_pred ccCcccccccccCchhHHHHHhh----CCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccC
Q 011381 366 SHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 366 ~~~~~~~~I~HgG~gt~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~ 441 (487)
..++ ++|+=||=||++.+.+. ++|++.+-.. .+|... + ++++++.+++++++++
T Consensus 67 ~~~D--lvi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGFLt---~---~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 67 SSMK--FAIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGFLT---E---AYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCcC--EEEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcccc---c---CCHHHHHHHHHHHHcC
Confidence 3466 99999999999999775 7788776421 122221 1 5678888888888875
No 300
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=31.81 E-value=4.3e+02 Score=27.78 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=21.6
Q ss_pred cCCceEEEeCCCcchHHHHHHHhCCCcEEEe
Q 011381 116 STRLVALVVDPFGSAAFDVANEVGVPAYVFF 146 (487)
Q Consensus 116 ~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~~ 146 (487)
+.+||+||.+. ..-.+|+++|||++.+.
T Consensus 360 ~~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 360 EAAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred hcCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 34999999887 33458999999987653
No 301
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=31.76 E-value=2.7e+02 Score=26.32 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCcee-----ccCCCcccccccCccccc
Q 011381 299 ELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVV-----PSWAPQAQVLSHGSTGGF 373 (487)
Q Consensus 299 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~-----~~~~pq~~iL~~~~~~~~ 373 (487)
.+.+.+++.+..++.+++.... +.. -.-+..+......++ .++-|+.++|+.++ .+
T Consensus 188 ~l~k~l~~~g~~~lisfSRRTp--------------~~~---~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ad--yi 248 (329)
T COG3660 188 LLVKILENQGGSFLISFSRRTP--------------DTV---KSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAAD--YI 248 (329)
T ss_pred HHHHHHHhCCceEEEEeecCCc--------------HHH---HHHHHhccccCceeEeCCCCCCCCchHHHHhhcc--eE
Confidence 3666677778888887776543 000 001111111122222 35668999999988 66
Q ss_pred c-cccCchhHHHHHhhCCceec
Q 011381 374 L-SHCGWNSILESIVHGVPIIA 394 (487)
Q Consensus 374 I-~HgG~gt~~eal~~GvP~v~ 394 (487)
| |--..|-.+||...|+|+-+
T Consensus 249 i~TaDSinM~sEAasTgkPv~~ 270 (329)
T COG3660 249 ISTADSINMCSEAASTGKPVFI 270 (329)
T ss_pred EEecchhhhhHHHhccCCCeEE
Confidence 5 45567888999999999844
No 302
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=31.63 E-value=1.5e+02 Score=26.83 Aligned_cols=38 Identities=5% Similarity=-0.025 Sum_probs=29.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
-+++...|+.|-..=.+.++...+++ |+.|.|++.+..
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~ 55 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEER 55 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCC
Confidence 45666678999988888888776565 999999998754
No 303
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=31.53 E-value=41 Score=31.35 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 26 IPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 26 ~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
.-.-.|+++|+++ ||+|++++|...
T Consensus 20 dv~~~L~kaL~~~-G~~V~Vi~P~y~ 44 (245)
T PF08323_consen 20 DVVGSLPKALAKQ-GHDVRVIMPKYG 44 (245)
T ss_dssp HHHHHHHHHHHHT-T-EEEEEEE-TH
T ss_pred HHHHHHHHHHHhc-CCeEEEEEccch
Confidence 4456899999775 999999998753
No 304
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=31.10 E-value=2.7e+02 Score=31.56 Aligned_cols=104 Identities=11% Similarity=0.000 Sum_probs=59.6
Q ss_pred CCCcc---cccccCccccccc---ccCchh-HHHHHhhCCc---eecccccccchhhhHhhhcccc-eeEEEeecCCCcc
Q 011381 358 WAPQA---QVLSHGSTGGFLS---HCGWNS-ILESIVHGVP---IIAWPLYSEQKMNAVLLTDDLK-VSFRVKVNENGLV 426 (487)
Q Consensus 358 ~~pq~---~iL~~~~~~~~I~---HgG~gt-~~eal~~GvP---~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~ 426 (487)
.+|+. +++..++ +|+- .-|+|- ..|+++++.. +++++-+. .-| .. +| -|+.+++ .
T Consensus 447 ~l~~eeL~AlY~~AD--V~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa---Gaa---~~-L~~~AllVNP-----~ 512 (934)
T PLN03064 447 SLDFHALCALYAVTD--VALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA---GAA---QS-LGAGAILVNP-----W 512 (934)
T ss_pred CCCHHHHHHHHHhCC--EEEeCccccccCchHHHHHHhhcCCCCCeEEeCCC---chH---HH-hCCceEEECC-----C
Confidence 35554 3445566 4443 358775 4599999652 22223221 111 22 43 4677776 4
Q ss_pred CHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcC
Q 011381 427 GREDIANYAKGLIQ-GEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWKNP 482 (487)
Q Consensus 427 ~~~~l~~av~~vl~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 482 (487)
+.+.++++|.+.|+ ++ +.-+++.+++.+.+.+ -+...-++.|++.|.+.
T Consensus 513 D~~~vA~AI~~AL~M~~--~Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 513 NITEVAASIAQALNMPE--EEREKRHRHNFMHVTT-----HTAQEWAETFVSELNDT 562 (934)
T ss_pred CHHHHHHHHHHHHhCCH--HHHHHHHHHHHhhccc-----CCHHHHHHHHHHHHHHH
Confidence 68999999999987 42 3455555556655552 35555566666666543
No 305
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.97 E-value=49 Score=35.19 Aligned_cols=27 Identities=11% Similarity=0.381 Sum_probs=21.4
Q ss_pred ccccccccCch------hHHHHHhhCCceeccc
Q 011381 370 TGGFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 370 ~~~~I~HgG~g------t~~eal~~GvP~v~~P 396 (487)
.+++++|.|-| .+++|.+.++|||+|-
T Consensus 78 ~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~ 110 (570)
T PRK06725 78 VGVVFATSGPGATNLVTGLADAYMDSIPLVVIT 110 (570)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCcCEEEEe
Confidence 33777777755 6789999999999985
No 306
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=30.55 E-value=1e+02 Score=25.80 Aligned_cols=36 Identities=11% Similarity=0.212 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEec
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIP 48 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~ 48 (487)
++-|++ ..+..--++|..-++...++. |++|+++.+
T Consensus 4 k~~IIl-~SG~~dk~~~a~iias~A~A~-G~EV~VF~T 39 (137)
T COG2210 4 KLGIIL-ASGTLDKAYAALIIASGAAAM-GYEVTVFFT 39 (137)
T ss_pred eEEEEE-eCCCHHHHHHHHHHHHHHHHc-CCeEEEEEe
Confidence 333433 347888899999999999775 999999886
No 307
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.32 E-value=72 Score=30.55 Aligned_cols=55 Identities=9% Similarity=0.180 Sum_probs=37.0
Q ss_pred cccCcccccccccCchhHHHHHhh----CCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhcc
Q 011381 365 LSHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQ 440 (487)
Q Consensus 365 L~~~~~~~~I~HgG~gt~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~ 440 (487)
...++ ++|+-||-||++.+.+. ++|++.+-.. .+|.. .+ +..+++.+++++++.
T Consensus 62 ~~~~D--lvi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL---t~---~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 62 FKISD--FLISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGFL---TD---ITVDEAEKFFQAFFQ 119 (287)
T ss_pred ccCCC--EEEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------CcccC---Cc---CCHHHHHHHHHHHHc
Confidence 34567 99999999999988663 6777665421 12221 12 567788888888876
Q ss_pred C
Q 011381 441 G 441 (487)
Q Consensus 441 ~ 441 (487)
+
T Consensus 120 g 120 (287)
T PRK14077 120 G 120 (287)
T ss_pred C
Confidence 5
No 308
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=30.22 E-value=3.3e+02 Score=25.58 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=38.3
Q ss_pred hHHHHHhhCCc---eecccccccchhhhHhhhcccceeEEEeecCCCc-cCHHHHHHHHH
Q 011381 381 SILESIVHGVP---IIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGL-VGREDIANYAK 436 (487)
Q Consensus 381 t~~eal~~GvP---~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~-~~~~~l~~av~ 436 (487)
++..+...|.| +|.+=--+.+..|-+.+.+ +|+...+.++..+. -+.+.+..|.+
T Consensus 163 ~l~~~~~~G~~~~~iia~~gPfs~e~n~al~~~-~~i~~lVtK~SG~~Gg~~eKi~AA~~ 221 (256)
T TIGR00715 163 ALAQALKLGFPSDRIIAMRGPFSEELEKALLRE-YRIDAVVTKASGEQGGELEKVKAAEA 221 (256)
T ss_pred hhHHHHHcCCChhcEEEEeCCCCHHHHHHHHHH-cCCCEEEEcCCCCccchHHHHHHHHH
Confidence 45667778887 5555334568899999999 99999998875332 35666655543
No 309
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=30.16 E-value=54 Score=29.10 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCCEEEEEecC
Q 011381 29 VELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 29 l~La~~L~~~~GH~Vt~~~~~ 49 (487)
..||+++.++ ||+|+++..+
T Consensus 33 ~~lA~~~~~~-Ga~V~li~g~ 52 (185)
T PF04127_consen 33 AALAEEAARR-GAEVTLIHGP 52 (185)
T ss_dssp HHHHHHHHHT-T-EEEEEE-T
T ss_pred HHHHHHHHHC-CCEEEEEecC
Confidence 6789999765 9999999977
No 310
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=30.10 E-value=5.3e+02 Score=25.21 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=28.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
++|.++-.++.| .+||..|+++ ||+|++.+....
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~n-g~~V~lw~r~~~ 35 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARN-GHEVRLWGRDEE 35 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhc-CCeeEEEecCHH
Confidence 578999989888 5899999876 999999986643
No 311
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=29.83 E-value=1.1e+02 Score=26.41 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=24.6
Q ss_pred cccccccCcccccccccCchhHHH---HHhhCCceecccc
Q 011381 361 QAQVLSHGSTGGFLSHCGWNSILE---SIVHGVPIIAWPL 397 (487)
Q Consensus 361 q~~iL~~~~~~~~I~HgG~gt~~e---al~~GvP~v~~P~ 397 (487)
...++...+-.+++-=||.||+.| ++.+++|+++++.
T Consensus 84 Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 84 RNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred HHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 444444433335555689998655 5889999999985
No 312
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=29.77 E-value=92 Score=32.92 Aligned_cols=25 Identities=16% Similarity=0.410 Sum_probs=21.1
Q ss_pred ccccccCch------hHHHHHhhCCceeccc
Q 011381 372 GFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 372 ~~I~HgG~g------t~~eal~~GvP~v~~P 396 (487)
++++|.|-| .+.||...++|||++-
T Consensus 66 v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~ 96 (548)
T PRK08978 66 VCIATSGPGATNLITGLADALLDSVPVVAIT 96 (548)
T ss_pred EEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 777777744 7899999999999995
No 313
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=29.76 E-value=84 Score=28.44 Aligned_cols=33 Identities=30% Similarity=0.259 Sum_probs=23.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCC
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTI 50 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~ 50 (487)
|+++++-.+-.| -.||++|+.. ||+|++.+...
T Consensus 2 ~~~~i~GtGniG-----~alA~~~a~a-g~eV~igs~r~ 34 (211)
T COG2085 2 MIIAIIGTGNIG-----SALALRLAKA-GHEVIIGSSRG 34 (211)
T ss_pred cEEEEeccChHH-----HHHHHHHHhC-CCeEEEecCCC
Confidence 466666555544 4788888776 99999997653
No 314
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=29.44 E-value=6.6e+02 Score=27.49 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=28.7
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 13 YVAMVPT-PGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 13 ~il~~~~-~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
.|.+.+. +..|-..-.+.|++.|.++ |.+|.++=|-
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~-G~~Vg~fKPi 40 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERK-GVKVGFFKPI 40 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEeCCc
Confidence 4666655 5688999999999999665 9999998754
No 315
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=29.11 E-value=2.6e+02 Score=29.13 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=54.9
Q ss_pred cCchhHHHHHhhCCceecccccc------cchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHH
Q 011381 377 CGWNSILESIVHGVPIIAWPLYS------EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKK 450 (487)
Q Consensus 377 gG~gt~~eal~~GvP~v~~P~~~------DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~ 450 (487)
||. |=.+|+++|.+-|+.+..+ |-..++ ... .|.|+.... .+++.+..++++.+. -|+..
T Consensus 381 cGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~-~gtGf~f~~-----~~~~~l~~al~rA~~-----~y~~~ 446 (487)
T COG0297 381 CGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQG-VGTGFLFLQ-----TNPDHLANALRRALV-----LYRAP 446 (487)
T ss_pred CcH-HHHHHHHcCCcceEcccCCccceecCccchh--ccC-ceeEEEEec-----CCHHHHHHHHHHHHH-----HhhCC
Confidence 676 5677999999888888864 333333 344 577776654 479999999998874 45555
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHH
Q 011381 451 MRALKDAAANALSPDGSSTKSLAQLA 476 (487)
Q Consensus 451 a~~l~~~~~~~~~~~g~~~~~~~~~~ 476 (487)
...++....+++..+=|-+....+.+
T Consensus 447 ~~~w~~~~~~~m~~d~sw~~sa~~y~ 472 (487)
T COG0297 447 PLLWRKVQPNAMGADFSWDLSAKEYV 472 (487)
T ss_pred HHHHHHHHHhhcccccCchhHHHHHH
Confidence 55455555655544444333443333
No 316
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=29.08 E-value=68 Score=30.62 Aligned_cols=75 Identities=9% Similarity=0.158 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCcc
Q 011381 291 TLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGST 370 (487)
Q Consensus 291 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~ 370 (487)
..+.+..+++.+++...+.+.||.+..+.. -.++.++++...+-++++
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g-------------------------------a~rlL~~ld~~~~~~~pK- 92 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGYG-------------------------------ANRLLPYLDYDLIRANPK- 92 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcCC-------------------------------HHHhhhhCCHHHHhhCCe-
Confidence 346778889999999999999999887654 133445555555556666
Q ss_pred cccccccCchhHHHHHhh--CCceeccccc
Q 011381 371 GGFLSHCGWNSILESIVH--GVPIIAWPLY 398 (487)
Q Consensus 371 ~~~I~HgG~gt~~eal~~--GvP~v~~P~~ 398 (487)
.||=..-..+++-+++. |++.+-=|+.
T Consensus 93 -~~iGySDiTaL~~~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 93 -IFVGYSDITALHLALYAKTGLVTFHGPML 121 (282)
T ss_pred -EEEEecHHHHHHHHHHHhcCceEEECccc
Confidence 77777777777777654 6666555543
No 317
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=28.99 E-value=71 Score=27.73 Aligned_cols=26 Identities=8% Similarity=0.180 Sum_probs=20.1
Q ss_pred ccccccCc------hhHHHHHhhCCceecccc
Q 011381 372 GFLSHCGW------NSILESIVHGVPIIAWPL 397 (487)
Q Consensus 372 ~~I~HgG~------gt~~eal~~GvP~v~~P~ 397 (487)
++++|.|- +++.+|...++|+|++.-
T Consensus 67 v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 67 VVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred EEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 77777764 478889999999999875
No 318
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=28.84 E-value=54 Score=22.91 Aligned_cols=55 Identities=15% Similarity=0.282 Sum_probs=35.7
Q ss_pred eecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 011381 419 KVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLAR 477 (487)
Q Consensus 419 ~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 477 (487)
+.+.+|.++.+++...++.+... ..........+.+-+..+.+++..-..+++++
T Consensus 10 D~d~~G~i~~~el~~~~~~~~~~----~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 10 DKDGDGYISKEELRRALKHLGRD----MSDEESDEMIDQIFREFDTDGDGRISFDEFLN 64 (66)
T ss_dssp STTSSSEEEHHHHHHHHHHTTSH----STHHHHHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred cCCccCCCCHHHHHHHHHHhccc----ccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence 34457889999999999988753 11333444444444456677777667777665
No 319
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=28.81 E-value=81 Score=27.99 Aligned_cols=37 Identities=16% Similarity=0.039 Sum_probs=29.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
+||++.-.++-| .+=...|.++|.+..||+|.++.++
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~ 38 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQ 38 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECH
Confidence 378777777777 6679999999965249999999987
No 320
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.32 E-value=74 Score=33.87 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=21.4
Q ss_pred ccccccccCch------hHHHHHhhCCceeccc
Q 011381 370 TGGFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 370 ~~~~I~HgG~g------t~~eal~~GvP~v~~P 396 (487)
++++++|.|-| ++++|...++|||++-
T Consensus 68 ~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~ 100 (574)
T PRK07979 68 VGVVLVTSGPGATNAITGIATAYMDSIPLVVLS 100 (574)
T ss_pred ceEEEECCCccHhhhHHHHHHHhhcCCCEEEEE
Confidence 33777777754 6889999999999995
No 321
>PRK11519 tyrosine kinase; Provisional
Probab=28.17 E-value=5.2e+02 Score=28.45 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=29.8
Q ss_pred cEEEEEcC--CCccChHHHHHHHHHHHhcCCCEEEEEecCC
Q 011381 12 AYVAMVPT--PGIGHLIPLVELAKRLVHQYNFLVTIFIPTI 50 (487)
Q Consensus 12 ~~il~~~~--~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~ 50 (487)
.++++++. |+-|-..-...||..|++. |++|.++-...
T Consensus 526 ~kvi~vts~~~geGKTt~a~nLA~~la~~-g~rvLlID~Dl 565 (719)
T PRK11519 526 NNVLMMTGVSPSIGKTFVCANLAAVISQT-NKRVLLIDCDM 565 (719)
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence 34544443 7999999999999999875 99999986543
No 322
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=27.85 E-value=3.9e+02 Score=22.95 Aligned_cols=135 Identities=19% Similarity=0.232 Sum_probs=69.0
Q ss_pred EEeCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCccc
Q 011381 284 VCFGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQ 363 (487)
Q Consensus 284 vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~ 363 (487)
|-+||.+ +....+++...|+.++.++-..+.+-.. .|+.+.+ |+-+..
T Consensus 3 IimGS~S--D~~~~~~a~~~L~~~gi~~dv~V~SaHR-------------------tp~~~~~-----------~~~~a~ 50 (156)
T TIGR01162 3 IIMGSDS--DLPTMKKAADILEEFGIPYELRVVSAHR-------------------TPELMLE-----------YAKEAE 50 (156)
T ss_pred EEECcHh--hHHHHHHHHHHHHHcCCCeEEEEECccc-------------------CHHHHHH-----------HHHHHH
Confidence 4456643 6677888888888888765443333222 3443221 111000
Q ss_pred ccccCcccccccccCchhHHHHHh---hCCceeccccccc--chhhh--Hhhh-cccc--eeEEEeecCCCccCHHHHHH
Q 011381 364 VLSHGSTGGFLSHCGWNSILESIV---HGVPIIAWPLYSE--QKMNA--VLLT-DDLK--VSFRVKVNENGLVGREDIAN 433 (487)
Q Consensus 364 iL~~~~~~~~I~HgG~gt~~eal~---~GvP~v~~P~~~D--Q~~na--~~v~-~~~G--~G~~l~~~~~~~~~~~~l~~ 433 (487)
=.+.+ +||.=.|...-+-++. .-+|+|.+|.... ...++ ..++ - -| ++...-.+ ..++.-+..
T Consensus 51 -~~g~~--viIa~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vqmP-~gvpvatv~I~~---~~nAa~~Aa 123 (156)
T TIGR01162 51 -ERGIK--VIIAGAGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMP-SGVPVATVAIGN---AGNAALLAA 123 (156)
T ss_pred -HCCCe--EEEEeCCccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHHhcCC-CCCeeEEEEcCC---hhHHHHHHH
Confidence 01122 6777666543333333 3579999998432 11111 1111 1 24 33222112 256666666
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHHh
Q 011381 434 YAKGLIQGEEGKLLRKKMRALKDAAANA 461 (487)
Q Consensus 434 av~~vl~~~~~~~~~~~a~~l~~~~~~~ 461 (487)
.|-. +.| +.++++.+.+++.+++.
T Consensus 124 qIl~-~~d---~~l~~kl~~~r~~~~~~ 147 (156)
T TIGR01162 124 QILG-IKD---PELAEKLKEYRENQKEE 147 (156)
T ss_pred HHHc-CCC---HHHHHHHHHHHHHHHHH
Confidence 6643 445 78888888887777753
No 323
>PRK07524 hypothetical protein; Provisional
Probab=27.72 E-value=1.2e+02 Score=31.83 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=20.2
Q ss_pred ccccccCch------hHHHHHhhCCceeccc
Q 011381 372 GFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 372 ~~I~HgG~g------t~~eal~~GvP~v~~P 396 (487)
+++.|.|-| ++.+|...++|+|++-
T Consensus 67 v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~ 97 (535)
T PRK07524 67 VCFIITGPGMTNIATAMGQAYADSIPMLVIS 97 (535)
T ss_pred EEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 666666744 8899999999999884
No 324
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=27.68 E-value=6.4e+02 Score=25.42 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=20.3
Q ss_pred cCCceEEEeCCCcchHHHHHHHhCCCcEE
Q 011381 116 STRLVALVVDPFGSAAFDVANEVGVPAYV 144 (487)
Q Consensus 116 ~~~~D~VI~D~~~~~~~~~A~~lgIP~v~ 144 (487)
..+||++|..... -.+|+++|||++.
T Consensus 354 ~~~pDl~ig~s~~---~~~a~~~gip~~~ 379 (410)
T cd01968 354 EKKADLLVAGGKE---RYLALKLGIPFCD 379 (410)
T ss_pred hcCCCEEEECCcc---hhhHHhcCCCEEE
Confidence 3389999998543 4678999999874
No 325
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=27.59 E-value=1.1e+02 Score=30.82 Aligned_cols=43 Identities=14% Similarity=0.240 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhccCCceEEEeCCCcchH-------H---HHHHHhCCCcEEEe
Q 011381 104 SSLRDALKVLAESTRLVALVVDPFGSAA-------F---DVANEVGVPAYVFF 146 (487)
Q Consensus 104 ~~l~~~l~~~~~~~~~D~VI~D~~~~~~-------~---~~A~~lgIP~v~~~ 146 (487)
+.....+.+++++.+||++|+-+.+-++ . .+.+++|||.+.-.
T Consensus 62 eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 62 EEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 3444455555566799999998865422 1 25667999998765
No 326
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=27.31 E-value=6e+02 Score=25.69 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=20.4
Q ss_pred CceEEEeCCCcchHHHHHHHhCCCcEEE
Q 011381 118 RLVALVVDPFGSAAFDVANEVGVPAYVF 145 (487)
Q Consensus 118 ~~D~VI~D~~~~~~~~~A~~lgIP~v~~ 145 (487)
+||++|.....- .+|+++|||++.+
T Consensus 358 ~pdliig~s~~~---~~a~~lgip~~~~ 382 (415)
T cd01977 358 KPDIILTGPRVG---ELVKKLHVPYVNI 382 (415)
T ss_pred CCCEEEecCccc---hhhhhcCCCEEec
Confidence 899999887432 5899999998864
No 327
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=27.28 E-value=1.1e+02 Score=30.74 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=31.4
Q ss_pred ccccccCchhHHHHHhhCCceecccccc--cchhhhHhhhcccceeEEEe
Q 011381 372 GFLSHCGWNSILESIVHGVPIIAWPLYS--EQKMNAVLLTDDLKVSFRVK 419 (487)
Q Consensus 372 ~~I~HgG~gt~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~ 419 (487)
...|.||.--+-|==.+|+|+|.|--.. -.-.-|.|++. ++++--+
T Consensus 347 gtC~r~~a~m~keiE~~GiPvv~~~~~~pis~tvGanrivp--~~~ip~P 394 (431)
T TIGR01918 347 GTCTRCGATMVKEIERAGIPVVHMCTVIPIALTVGANRIVP--TIAIPHP 394 (431)
T ss_pred CcchhHHHHHHHHHHHcCCCEEEEeecccHhhhcCccceec--ccCcCCC
Confidence 5678888877777778999998776432 33444677777 6665433
No 328
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=27.15 E-value=72 Score=30.48 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=25.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
|+|+++..+..| ..+|..|++. ||+|+++...
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~-g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQA-GHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhC-CCeEEEEECC
Confidence 578888877777 5678889765 9999999863
No 329
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=26.98 E-value=5.4e+02 Score=24.52 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=71.3
Q ss_pred HHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCccccccccc
Q 011381 298 NELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHC 377 (487)
Q Consensus 298 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~Hg 377 (487)
..+++.++..+.+++...+...- +|+.|...++ ..-+-=|++ +.=...
T Consensus 150 ~~~~~~l~~~~~Dlivlagym~i-------------------l~~~~l~~~~-----------~~iINiHpS--LLP~f~ 197 (280)
T TIGR00655 150 KRQLELLKQYQVDLVVLAKYMQI-------------------LSPDFVKRYP-----------NKIINIHHS--FLPAFI 197 (280)
T ss_pred HHHHHHHHHhCCCEEEEeCchhh-------------------CCHHHHhhcc-----------CCEEEecCC--cCCCCC
Confidence 45777788888888877776543 6666554333 223334666 555668
Q ss_pred CchhHHHHHhhCCceecccccc--cchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHH
Q 011381 378 GWNSILESIVHGVPIIAWPLYS--EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALK 455 (487)
Q Consensus 378 G~gt~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~ 455 (487)
|.+....|+.+|+...++-++. +..+...-+.. .-+.+... -|.++|.+.+.++-. .-|-+..+.+.
T Consensus 198 G~~p~~~ai~~G~k~tG~TvH~V~e~lD~GpII~Q---~~v~I~~~----dt~~~L~~ri~~~E~----~~~~~ai~~~~ 266 (280)
T TIGR00655 198 GANPYQRAYERGVKIIGATAHYVTEELDEGPIIEQ---DVVRVDHT----DNVEDLIRAGRDIEK----VVLARAVKLHL 266 (280)
T ss_pred CcCHHHHHHHcCCCeEEEEEEEEcCCCcCCCeEEE---EEEEcCCC----CCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 9999999999999998877642 33333333333 22333333 489999988877532 34555544443
No 330
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=26.89 E-value=88 Score=30.68 Aligned_cols=82 Identities=13% Similarity=0.129 Sum_probs=59.4
Q ss_pred CCce-eccCCC---cccccccCcccccccc--cCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCC
Q 011381 351 VGLV-VPSWAP---QAQVLSHGSTGGFLSH--CGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENG 424 (487)
Q Consensus 351 ~~v~-~~~~~p---q~~iL~~~~~~~~I~H--gG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 424 (487)
.++. +.+++| ..++|..|+++.|.|. =|.|+++-.++.|+|++.-- +=+++ .-+.+ .|+=+.-..++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~---~np~~-~~l~~-~~ipVlf~~d~-- 317 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR---DNPFW-QDLKE-QGIPVLFYGDE-- 317 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec---CChHH-HHHHh-CCCeEEecccc--
Confidence 3564 467887 4668999998888775 68999999999999997532 22333 33444 47766665555
Q ss_pred ccCHHHHHHHHHHhcc
Q 011381 425 LVGREDIANYAKGLIQ 440 (487)
Q Consensus 425 ~~~~~~l~~av~~vl~ 440 (487)
++...|+++=+++..
T Consensus 318 -L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 318 -LDEALVREAQRQLAN 332 (360)
T ss_pred -CCHHHHHHHHHHHhh
Confidence 899999998887765
No 331
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=26.78 E-value=3.3e+02 Score=25.62 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=22.3
Q ss_pred CCceEEE-eCCCcch-HHHHHHHhCCCcEEEecc
Q 011381 117 TRLVALV-VDPFGSA-AFDVANEVGVPAYVFFTT 148 (487)
Q Consensus 117 ~~~D~VI-~D~~~~~-~~~~A~~lgIP~v~~~~~ 148 (487)
..||+|| .|+..-- +..=|.++|||.|.+.-+
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDT 189 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDT 189 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeC
Confidence 4699766 6664333 445788999999987543
No 332
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=26.69 E-value=95 Score=29.03 Aligned_cols=32 Identities=13% Similarity=0.327 Sum_probs=22.4
Q ss_pred ccCCceEEE--eCCCcch----HHHHHHHhCCCcEEEe
Q 011381 115 ESTRLVALV--VDPFGSA----AFDVANEVGVPAYVFF 146 (487)
Q Consensus 115 ~~~~~D~VI--~D~~~~~----~~~~A~~lgIP~v~~~ 146 (487)
++.++++|| ++++..- +..+|+.+|||++-+.
T Consensus 62 ~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 62 REEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred HHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 345999999 5554432 2358999999998753
No 333
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.55 E-value=94 Score=29.19 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=36.2
Q ss_pred cCcccccccccCchhHHHHHh-hCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccC
Q 011381 367 HGSTGGFLSHCGWNSILESIV-HGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 367 ~~~~~~~I~HgG~gt~~eal~-~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~ 441 (487)
.++ ++|+=||-||++.|++ +++|++.+-.. .+|... + ++.+++.+++++++++
T Consensus 41 ~~d--~vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl~---~---~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 41 TAD--LIIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFLS---S---YTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCC--EEEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCcccc---c---cCHHHHHHHHHHHHcC
Confidence 445 9999999999999987 46666554411 123222 2 5678888888888775
No 334
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=26.46 E-value=72 Score=29.38 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCCEEEEEecC
Q 011381 29 VELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 29 l~La~~L~~~~GH~Vt~~~~~ 49 (487)
.+||++|.++ ||+|+++...
T Consensus 30 ~aLA~~L~~~-G~~V~li~r~ 49 (229)
T PRK06732 30 KIIAETFLAA-GHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHhC-CCEEEEEECc
Confidence 5788888775 9999998643
No 335
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=26.42 E-value=7.2e+02 Score=25.52 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=20.5
Q ss_pred cCCceEEEeCCCcchHHHHHHHhCCCcEEE
Q 011381 116 STRLVALVVDPFGSAAFDVANEVGVPAYVF 145 (487)
Q Consensus 116 ~~~~D~VI~D~~~~~~~~~A~~lgIP~v~~ 145 (487)
..+||++|... ....+|+++|||++.+
T Consensus 393 ~~~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 393 EYKADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred hcCCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 34899999874 3356788999998764
No 336
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=26.39 E-value=1.7e+02 Score=25.53 Aligned_cols=39 Identities=18% Similarity=0.415 Sum_probs=33.5
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEE-EEEecC
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLV-TIFIPT 49 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~V-t~~~~~ 49 (487)
..|+|++...|+-|-..-.+.|+..|.++ |.+| -|++++
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t~E 43 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFITPE 43 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEeee
Confidence 46899999999999999999999999665 9999 455555
No 337
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=26.37 E-value=5.4e+02 Score=26.53 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=20.9
Q ss_pred CCceEEEeCCCcchHHHHHHHhCCCcEEE
Q 011381 117 TRLVALVVDPFGSAAFDVANEVGVPAYVF 145 (487)
Q Consensus 117 ~~~D~VI~D~~~~~~~~~A~~lgIP~v~~ 145 (487)
.+||++|..... -.+|+++|||++.+
T Consensus 394 ~~pDllig~~~~---~~~a~k~gip~~~~ 419 (457)
T TIGR01284 394 YKPDIILTGIRE---GELAKKLGVPYINI 419 (457)
T ss_pred cCCCEEEecCCc---chhhhhcCCCEEEc
Confidence 389999988743 56899999998764
No 338
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=26.33 E-value=2.1e+02 Score=24.78 Aligned_cols=37 Identities=8% Similarity=-0.040 Sum_probs=31.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 14 VAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 14 il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
+++...|+.|=..=.+.++...+++ |..|.|++.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCC
Confidence 5777889999999999999998765 999999998744
No 339
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=26.16 E-value=2.3e+02 Score=29.48 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=23.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhc-CCCEEEEEec
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQ-YNFLVTIFIP 48 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~-~GH~Vt~~~~ 48 (487)
|+||++..+++.| +|+++|.+. +|++|.++-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 6899999888888 477888442 2888877743
No 340
>PRK08617 acetolactate synthase; Reviewed
Probab=26.05 E-value=1.4e+02 Score=31.55 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=20.9
Q ss_pred ccccccCc------hhHHHHHhhCCceecccc
Q 011381 372 GFLSHCGW------NSILESIVHGVPIIAWPL 397 (487)
Q Consensus 372 ~~I~HgG~------gt~~eal~~GvP~v~~P~ 397 (487)
++++|.|- +++.+|...++|||+|--
T Consensus 70 v~~vt~GpG~~N~l~gl~~A~~~~~PvlvisG 101 (552)
T PRK08617 70 VVLVTSGPGVSNLATGLVTATAEGDPVVAIGG 101 (552)
T ss_pred EEEECCCCcHhHhHHHHHHHhhcCCCEEEEec
Confidence 66777664 488999999999999953
No 341
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.94 E-value=1.4e+02 Score=31.82 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=21.5
Q ss_pred cccccccCc------hhHHHHHhhCCceeccc
Q 011381 371 GGFLSHCGW------NSILESIVHGVPIIAWP 396 (487)
Q Consensus 371 ~~~I~HgG~------gt~~eal~~GvP~v~~P 396 (487)
+++++|.|- +++.+|...++|||++-
T Consensus 69 gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 69 GVVLVTSGPGATNAITGIATAYMDSIPMVVLS 100 (574)
T ss_pred EEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 377777774 48899999999999995
No 342
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=25.71 E-value=49 Score=30.88 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=22.6
Q ss_pred CcccccccccCchhHHHHHhh----CCceecccc
Q 011381 368 GSTGGFLSHCGWNSILESIVH----GVPIIAWPL 397 (487)
Q Consensus 368 ~~~~~~I~HgG~gt~~eal~~----GvP~v~~P~ 397 (487)
++ ++|+-||=||++.|++. ++|++.+-.
T Consensus 26 ~D--lvi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 AD--VIVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CC--EEEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 56 99999999999988765 678777653
No 343
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=25.60 E-value=4.8e+02 Score=23.19 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhc
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQ 38 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~ 38 (487)
+++++++- ++-||.-=|+.|-++|.++
T Consensus 38 s~~~lVvl-GSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 38 SLSTLVVL-GSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred cceEEEEE-cCCCcHHHHHHHHHHHHhh
Confidence 44666665 9999999999999999655
No 344
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.56 E-value=5.5e+02 Score=24.51 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=71.9
Q ss_pred HHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCccccccccc
Q 011381 298 NELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTGGFLSHC 377 (487)
Q Consensus 298 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~~~I~Hg 377 (487)
.++.+.++..+.+++...+...- +|+.|.... |..-+-=|++ +.=.-.
T Consensus 155 ~~~~~~l~~~~~Dlivlagy~~i-------------------l~~~~l~~~-----------~~~iiNiHpS--LLP~yr 202 (286)
T PRK06027 155 ARLLELIDEYQPDLVVLARYMQI-------------------LSPDFVARF-----------PGRIINIHHS--FLPAFK 202 (286)
T ss_pred HHHHHHHHHhCCCEEEEecchhh-------------------cCHHHHhhc-----------cCCceecCcc--cCCCCC
Confidence 34677777788888887776543 666554332 3333445666 655568
Q ss_pred CchhHHHHHhhCCceecccccc--cchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHHHHHHHHH
Q 011381 378 GWNSILESIVHGVPIIAWPLYS--EQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRKKMRALK 455 (487)
Q Consensus 378 G~gt~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~ 455 (487)
|.+.+..|+.+|+...++-++. +..+....+.. .-+.+..+ -|.++|.+.+.++-. .-|-+..+.+.
T Consensus 203 G~~~~~~ai~~G~~~tG~TiH~v~~~~D~G~Ii~Q---~~v~i~~~----dt~~~L~~ri~~~E~----~~~~~ai~~~~ 271 (286)
T PRK06027 203 GAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQ---DVIRVDHR----DTAEDLVRAGRDVEK----QVLARAVRWHL 271 (286)
T ss_pred CCCHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEE---EEEEcCCC----CCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 9999999999999987777642 33344433333 23334444 488999988876432 45655555444
No 345
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.33 E-value=1.5e+02 Score=28.61 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=23.9
Q ss_pred cCcccccccccCchhHHHHHhh----CCceecccc
Q 011381 367 HGSTGGFLSHCGWNSILESIVH----GVPIIAWPL 397 (487)
Q Consensus 367 ~~~~~~~I~HgG~gt~~eal~~----GvP~v~~P~ 397 (487)
.++ ++|.-||-||+.+++.. ++|++++..
T Consensus 57 ~~d--~vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LID--LAIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcC--EEEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 456 99999999999999864 778887764
No 346
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=25.04 E-value=3.5e+02 Score=21.44 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=17.2
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 24 HLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 24 H~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
+=.-++.+|+.|... |+++ ++|..
T Consensus 10 ~K~~~~~~a~~l~~~-G~~i-~AT~g 33 (112)
T cd00532 10 VKAMLVDLAPKLSSD-GFPL-FATGG 33 (112)
T ss_pred cHHHHHHHHHHHHHC-CCEE-EECcH
Confidence 345678999999764 9998 35543
No 347
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=24.95 E-value=7.8e+02 Score=26.29 Aligned_cols=85 Identities=15% Similarity=0.222 Sum_probs=44.4
Q ss_pred ccccccCchhHHHHHh---hCCceeccccccc--chhhh-Hhhhccc--ceeEEEeecCCCccCHHHHHHHHHHhccCch
Q 011381 372 GFLSHCGWNSILESIV---HGVPIIAWPLYSE--QKMNA-VLLTDDL--KVSFRVKVNENGLVGREDIANYAKGLIQGEE 443 (487)
Q Consensus 372 ~~I~HgG~gt~~eal~---~GvP~v~~P~~~D--Q~~na-~~v~~~~--G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~ 443 (487)
+||.=.|.-.-+-++. .-+|+|.+|.... -...+ --+.. . |+.+..-.- |+..++.-++..|.. +.+
T Consensus 468 v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~-~p~g~pv~~v~i-~~~~~aa~~a~~i~~-~~~-- 542 (577)
T PLN02948 468 VIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQ-MPRGVPVATVAI-GNATNAGLLAVRMLG-ASD-- 542 (577)
T ss_pred EEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhc-CCCCCeEEEEec-CChHHHHHHHHHHHh-cCC--
Confidence 6666655443333333 3579999998532 11111 12233 3 533221110 112566656555533 335
Q ss_pred hHHHHHHHHHHHHHHHHhc
Q 011381 444 GKLLRKKMRALKDAAANAL 462 (487)
Q Consensus 444 ~~~~~~~a~~l~~~~~~~~ 462 (487)
+.++++.+..++.+++.+
T Consensus 543 -~~~~~~~~~~~~~~~~~~ 560 (577)
T PLN02948 543 -PDLLDKMEAYQEDMRDMV 560 (577)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 788888888888887644
No 348
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=24.40 E-value=5.7e+02 Score=24.15 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
+..+|.+...|+-|-=.=.-.|++.|.++ ||+|-++.-.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~-g~~VaVlAVD 66 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRER-GKRVAVLAVD 66 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHT-T--EEEEEE-
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhc-CCceEEEEEC
Confidence 45689999999999999999999999765 9999888754
No 349
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=24.32 E-value=98 Score=31.98 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCCccChHHH------------HHHHHHHHhcCCCEEEEEecC
Q 011381 10 PRAYVAMVPTPGIGHLIPL------------VELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~------------l~La~~L~~~~GH~Vt~~~~~ 49 (487)
+.++|++..-|++=-+.|. .+||+++..+ |++||+++.+
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~-GA~VtlI~Gp 305 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAA-GAEVTLISGP 305 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 4568999988888888886 4789999765 9999999866
No 350
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=24.31 E-value=2.4e+02 Score=25.82 Aligned_cols=25 Identities=20% Similarity=0.064 Sum_probs=20.1
Q ss_pred cEEEEEcCCCccC--hHHHHHHHHHHH
Q 011381 12 AYVAMVPTPGIGH--LIPLVELAKRLV 36 (487)
Q Consensus 12 ~~il~~~~~~~GH--~~p~l~La~~L~ 36 (487)
|+|++..|.-+|. +||...++++|.
T Consensus 2 ~~ILvTGF~PFgg~~~NPS~~~v~~L~ 28 (222)
T PRK13195 2 SKVLVTGFGPYGVTPVNPAQLTAEELD 28 (222)
T ss_pred CEEEEeeecCCCCCCcCchHHHHHhcc
Confidence 5788888865554 899999999994
No 351
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.30 E-value=1.9e+02 Score=28.14 Aligned_cols=35 Identities=31% Similarity=0.575 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCC
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTI 50 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~ 50 (487)
+.++|.++-.++-||+- +.+|+++ |++||.+.+..
T Consensus 181 pG~~vgI~GlGGLGh~a--Vq~AKAM----G~rV~vis~~~ 215 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMA--VQYAKAM----GMRVTVISTSS 215 (360)
T ss_pred CCcEEEEecCcccchHH--HHHHHHh----CcEEEEEeCCc
Confidence 56799999999999973 4555555 99999999874
No 352
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=24.25 E-value=1e+02 Score=27.31 Aligned_cols=37 Identities=14% Similarity=0.306 Sum_probs=29.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCC
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTI 50 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~ 50 (487)
+||++.-.++.|=+. ...+.+.|.++ |++|.++.++.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~-g~~V~vv~T~~ 38 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKR-GYQVTVLMTKA 38 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHC-CCEEEEEEChh
Confidence 367777767766655 89999999665 99999988774
No 353
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=24.03 E-value=88 Score=20.42 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHhccCchhHHHHHHHHHH
Q 011381 427 GREDIANYAKGLIQGEEGKLLRKKMRAL 454 (487)
Q Consensus 427 ~~~~l~~av~~vl~~~~~~~~~~~a~~l 454 (487)
+.|+|..||..+.++. -++++.|+.+
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 4789999999988653 5677777764
No 354
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.89 E-value=1.3e+02 Score=28.44 Aligned_cols=54 Identities=9% Similarity=0.156 Sum_probs=37.0
Q ss_pred cCcccccccccCchhHHHHHhh-----CCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccC
Q 011381 367 HGSTGGFLSHCGWNSILESIVH-----GVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 367 ~~~~~~~I~HgG~gt~~eal~~-----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~ 441 (487)
.++ ++|+=||=||++.|++. .+|++.+-..+ .+|.. .+ ++.+++.+++.+++++
T Consensus 39 ~~D--~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL---~~---~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 39 NAN--IIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFY---CD---FHIDDLDKMIQAITKE 97 (264)
T ss_pred Ccc--EEEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEc---cc---CCHHHHHHHHHHHHcC
Confidence 356 99999999999999874 45655544200 22322 22 5678888899888875
No 355
>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4.2.1.9 from EC) (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (4.2.1.12 from EC) (gene edd) have been shown to be evolutionary related []. Dihydroxy-acid dehydratase catalyses the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyses the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GP4_B.
Probab=23.75 E-value=1.2e+02 Score=31.58 Aligned_cols=50 Identities=12% Similarity=0.264 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHhccCCceEEE----eCCCcchHHHHHHHhCCCcEEEecchHH
Q 011381 102 SLSSLRDALKVLAESTRLVALV----VDPFGSAAFDVANEVGVPAYVFFTTTAM 151 (487)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~D~VI----~D~~~~~~~~~A~~lgIP~v~~~~~~~~ 151 (487)
+.+.+.+.++..++.+.+|-+| +|-..+..+..|-+++||.|++...+..
T Consensus 63 sRelIAd~iE~~~~a~~~Dg~V~l~gCDK~~Pg~lMaaarlniPsi~v~gGpm~ 116 (521)
T PF00920_consen 63 SRELIADSIEEMVRAHPFDGMVLLGGCDKIVPGMLMAAARLNIPSIFVYGGPML 116 (521)
T ss_dssp HHHHHHHHHHHHHTT---SEEEEE--STTCCHHHHHHHHTTTS-EEE-------
T ss_pred hHHHHHHHHHHHHhCCCcceEEEeccCCCccHHHHHHHHHcCCCEEEEecCCCC
Confidence 4455677778777788999877 6777777777888899999988765433
No 356
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=23.64 E-value=1.5e+02 Score=29.44 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=29.4
Q ss_pred EcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 17 VPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 17 ~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
-..--+|++----+||+.|++++|+.|++.+....
T Consensus 6 ~VIDNfGDIGVcWRLArqLa~e~g~~VrLwvDdl~ 40 (374)
T PF10093_consen 6 RVIDNFGDIGVCWRLARQLAAEHGQQVRLWVDDLA 40 (374)
T ss_pred EeccCCcchHHHHHHHHHHHHHhCCeEEEEECCHH
Confidence 33456899999999999999988999999997643
No 357
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=23.54 E-value=1.6e+02 Score=26.15 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=21.5
Q ss_pred eEEEeCCCcch-HHHHHHHhCCCcEEEecc
Q 011381 120 VALVVDPFGSA-AFDVANEVGVPAYVFFTT 148 (487)
Q Consensus 120 D~VI~D~~~~~-~~~~A~~lgIP~v~~~~~ 148 (487)
.++|...+... +..+|+++|+|.|.+.|+
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPa 90 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPA 90 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCC
Confidence 47776665544 446999999999887765
No 358
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=23.54 E-value=57 Score=34.70 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=20.5
Q ss_pred ccccccCc------hhHHHHHhhCCceeccc
Q 011381 372 GFLSHCGW------NSILESIVHGVPIIAWP 396 (487)
Q Consensus 372 ~~I~HgG~------gt~~eal~~GvP~v~~P 396 (487)
++++|.|- +.+.+|...++|||++.
T Consensus 71 v~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 71 VCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 66767664 47899999999999995
No 359
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=23.50 E-value=4.4e+02 Score=24.19 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=22.3
Q ss_pred CCceEEE-eCCCcc-hHHHHHHHhCCCcEEEecc
Q 011381 117 TRLVALV-VDPFGS-AAFDVANEVGVPAYVFFTT 148 (487)
Q Consensus 117 ~~~D~VI-~D~~~~-~~~~~A~~lgIP~v~~~~~ 148 (487)
..||+|| .|+..- .+..=|.++|||.|.+.-+
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDT 187 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDT 187 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeC
Confidence 4699766 666433 3456788999999987543
No 360
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=23.49 E-value=1.3e+02 Score=27.05 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=23.9
Q ss_pred HHHHhccCCceEEEeCCCc------chHHHHHHHhCCCcEE
Q 011381 110 LKVLAESTRLVALVVDPFG------SAAFDVANEVGVPAYV 144 (487)
Q Consensus 110 l~~~~~~~~~D~VI~D~~~------~~~~~~A~~lgIP~v~ 144 (487)
+.+++++.+||+|+.-.-. ..++.+|.++|.|++.
T Consensus 100 l~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvs 140 (202)
T cd01714 100 LAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQIT 140 (202)
T ss_pred HHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccc
Confidence 3333334479999866544 3566799999999765
No 361
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=23.17 E-value=1.3e+02 Score=28.15 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=30.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEe
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFI 47 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~ 47 (487)
|+|++..=++-|-..-...||.+|+++ |++|.++=
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~-g~rVLliD 35 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKL-GKRVLQIG 35 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhC-CCeEEEEe
Confidence 578888668999999999999999875 99998874
No 362
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=22.96 E-value=8.6e+02 Score=25.21 Aligned_cols=144 Identities=15% Similarity=0.158 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhh---cCCCceeccCCCcccccccCc
Q 011381 293 SQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRT---KGVGLVVPSWAPQAQVLSHGS 369 (487)
Q Consensus 293 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~---~~~~v~~~~~~pq~~iL~~~~ 369 (487)
...++..+-.|+...+..-||+-...+. +..--.+..... ...-++..+|-|- .+|.+.+
T Consensus 165 ~~~~l~m~~~ai~enp~a~i~~kthpdv----------------l~gkkqg~lt~~~~~~r~~ll~edfnpi-sll~~~d 227 (671)
T COG3563 165 ASTFLLMFQTAINENPQADIWVKTHPDV----------------LCGKKQGYLTQLSQQHRVHLLAEDFNPI-SLLQNVD 227 (671)
T ss_pred hhHHHHHHHHHHhcCCcccEEEEeCCch----------------hcCcccchhhhhccCceEEEecccCChH-HHHHhcc
Confidence 3445667888898899888998655432 111111111111 1122334555554 4566655
Q ss_pred cc-ccccccCchhHHHHHhhCCceecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHhccCchhHHHH
Q 011381 370 TG-GFLSHCGWNSILESIVHGVPIIAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLR 448 (487)
Q Consensus 370 ~~-~~I~HgG~gt~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~~ 448 (487)
-. ++-+|- -.|||.+|+|.++..+.+ . .|.|+ |.+++...=++.-.+- -+-|.
T Consensus 228 kvy~~ts~m----gfeall~~~~~~~fg~p~----------y-agwgl----------tddrl~~~~r~akrsl-~qlfy 281 (671)
T COG3563 228 KVYCVTSQM----GFEALLCGKPLTTFGLPW----------Y-AGWGL----------TDDRLEQTQRRAKRSL-LQLFY 281 (671)
T ss_pred eeEEeeccc----cHHHHhcCCceeeecchh----------h-cccCc----------chhHHHHHHhhhhhhH-HHHHH
Confidence 32 333333 379999999998876532 2 56663 3333322222111100 03466
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 011381 449 KKMRALKDAAANALSPDGSSTKSLAQLARIW 479 (487)
Q Consensus 449 ~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l 479 (487)
++=-+.++-+.....+.|+..+.++.|+..-
T Consensus 282 aay~~y~ry~np~~~~~~~lfd~id~lat~k 312 (671)
T COG3563 282 AAYLQYSRYLNPNTGEAGSLFDVIDYLATVK 312 (671)
T ss_pred HHHHHHHHhcCCCccccchHHHHHHHHHHHh
Confidence 6666677777776777788888888877653
No 363
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=22.94 E-value=1.1e+02 Score=28.68 Aligned_cols=31 Identities=26% Similarity=0.607 Sum_probs=21.8
Q ss_pred ccCCceEEE--eCCCcch----HHHHHHHhCCCcEEE
Q 011381 115 ESTRLVALV--VDPFGSA----AFDVANEVGVPAYVF 145 (487)
Q Consensus 115 ~~~~~D~VI--~D~~~~~----~~~~A~~lgIP~v~~ 145 (487)
++.++|+|| ++++..- +..+|+.+|||++-+
T Consensus 63 ~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 63 RENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred HhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 345999999 5554332 235899999999875
No 364
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=22.90 E-value=6.7e+02 Score=23.95 Aligned_cols=39 Identities=13% Similarity=-0.019 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCccChHHHHHHHHHHHhc-CCCEEEEEecC
Q 011381 8 QIPRAYVAMVPTPGIGHLIPLVELAKRLVHQ-YNFLVTIFIPT 49 (487)
Q Consensus 8 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~~-~GH~Vt~~~~~ 49 (487)
..+++||+++..+..+ .+.+|.++.... .+++|.++.+.
T Consensus 86 ~~~~~ri~vl~Sg~g~---nl~al~~~~~~~~~~~~i~~visn 125 (286)
T PRK13011 86 PAARPKVLIMVSKFDH---CLNDLLYRWRIGELPMDIVGVVSN 125 (286)
T ss_pred cccCceEEEEEcCCcc---cHHHHHHHHHcCCCCcEEEEEEEC
Confidence 3457899999887533 445555555322 15899887653
No 365
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=22.84 E-value=1.3e+02 Score=27.08 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 9 IPRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 9 ~~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
..+++|.+-..|+-|-.+-|+.=|++|.++ |.+|.+..-+
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~-G~DVViG~ve 42 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQ-GVDVVIGYVE 42 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHT-T--EEEEE--
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHC-CCCEEEEEec
Confidence 457899999999999999999999999775 9999886655
No 366
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=22.76 E-value=1.3e+02 Score=28.14 Aligned_cols=37 Identities=19% Similarity=0.096 Sum_probs=31.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
|.|.+..=++-|-..-...||.+|+++ |++|.++=..
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~-G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKR-GKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHC-CCcEEEEecC
Confidence 568888779999999999999999875 9999887543
No 367
>PRK13604 luxD acyl transferase; Provisional
Probab=22.64 E-value=1.9e+02 Score=28.07 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEE
Q 011381 10 PRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIF 46 (487)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~ 46 (487)
++..++++..+..++-.-+..+|+.|+++ |..|.-+
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~-G~~vLrf 70 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSN-GFHVIRY 70 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHC-CCEEEEe
Confidence 44467777878888877799999999775 9988654
No 368
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.58 E-value=1.5e+02 Score=24.43 Aligned_cols=38 Identities=16% Similarity=0.390 Sum_probs=26.8
Q ss_pred eEEEEEeCCCcCCCHHHHHHHHHHHHHc--CCceEEEEeC
Q 011381 280 SVLFVCFGSGGTLSQEQLNELALGLEMS--GQRFLWVAKS 317 (487)
Q Consensus 280 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~ 317 (487)
.+++++|||......+.+..+.+.+++. +..|-|.+-+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 4899999997654555677888888543 3466776654
No 369
>PRK06270 homoserine dehydrogenase; Provisional
Probab=22.52 E-value=4.4e+02 Score=25.91 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=33.8
Q ss_pred CcccccccCccccccc------ccC---chhHHHHHhhCCceec---ccccccchhhhHhhhcccceeEEE
Q 011381 360 PQAQVLSHGSTGGFLS------HCG---WNSILESIVHGVPIIA---WPLYSEQKMNAVLLTDDLKVSFRV 418 (487)
Q Consensus 360 pq~~iL~~~~~~~~I~------HgG---~gt~~eal~~GvP~v~---~P~~~DQ~~na~~v~~~~G~G~~l 418 (487)
+..++|..++..++|- |+| .--+.+||.+|+++|+ -|+...-..-.+..++ .|+.+..
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~-~g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKK-NGVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHH-cCCEEEE
Confidence 3455665544445555 543 4456899999999999 4765432223333344 5666554
No 370
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=22.51 E-value=2e+02 Score=32.18 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=37.6
Q ss_pred cCHHHHHHHHHHhcc------CchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcC
Q 011381 426 VGREDIANYAKGLIQ------GEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWKNP 482 (487)
Q Consensus 426 ~~~~~l~~av~~vl~------~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 482 (487)
.+.+.+.+.+..++. ++.-.+-.++.++-++++++|+ ++|.++.+|++|+++|++.
T Consensus 474 ~~~~~l~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQ~aL~eAL-~~gAsdeEI~~Lm~eLR~A 535 (851)
T TIGR02302 474 RTDDALRDVADNLWSLALGIEDGDLSDAERRLRAAQDALKDAL-ERGASDEEIKQLTDKLRAA 535 (851)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHH
Confidence 355666666555533 4333566667777777777777 3678888999999998753
No 371
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=22.39 E-value=1.5e+02 Score=28.36 Aligned_cols=38 Identities=16% Similarity=0.057 Sum_probs=32.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCC
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTI 50 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~ 50 (487)
|+|++..=++-|-..-.+.||.+|+++ |++|.++=-.+
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~-G~rVLlID~Dp 38 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARR-GKKVLQIGCDP 38 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEeccC
Confidence 568888889999999999999999875 99998876443
No 372
>COG2733 Predicted membrane protein [Function unknown]
Probab=22.10 E-value=1.1e+02 Score=30.43 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=39.1
Q ss_pred cCchhHHHHHh-------------hCCce-ecccccccchhhhHhhhcccceeEEEeecCCCccCHHHHHHHHHHh
Q 011381 377 CGWNSILESIV-------------HGVPI-IAWPLYSEQKMNAVLLTDDLKVSFRVKVNENGLVGREDIANYAKGL 438 (487)
Q Consensus 377 gG~gt~~eal~-------------~GvP~-v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~av~~v 438 (487)
|+.++++||-. +-.|+ |.+|+..==|.|=.++.+ ++|..+..+ +++++.|.+.+++.
T Consensus 38 g~v~a~aEAAmVGgLADWFAVtALFr~PlgipipHTAIIprNKdri~e--~l~~FV~~~---fLs~e~i~~Kl~~~ 108 (415)
T COG2733 38 GFVGAIAEAAMVGGLADWFAVTALFRHPLGIPIPHTAIIPRNKDRIGE--NLGQFVQNN---FLSPESINEKLRRA 108 (415)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCCCcchhhccccHHHHHH--HHHHHHHHc---ccChHHHHHHHHhc
Confidence 55667777632 44787 778888777778777777 777666655 37787777776653
No 373
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=21.97 E-value=4.1e+02 Score=28.31 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=21.9
Q ss_pred ccccccccCch------hHHHHHhhCCceeccc
Q 011381 370 TGGFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 370 ~~~~I~HgG~g------t~~eal~~GvP~v~~P 396 (487)
.+++++|.|-| .+++|...++|+|+|.
T Consensus 65 ~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 65 MSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred CEEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 33777887755 7789999999999995
No 374
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=21.94 E-value=98 Score=29.61 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=25.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEec
Q 011381 12 AYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIP 48 (487)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~ 48 (487)
|+|+++..++.| ..+|..|+++ ||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHC-CCceEEEec
Confidence 578888888776 4578889776 999999986
No 375
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.92 E-value=2.5e+02 Score=28.38 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=31.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 13 YVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
-|++-.-|+-|--.=++.++..|+++ | .|.+++.+.-
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~-~-~vLYVsGEES 131 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKR-G-KVLYVSGEES 131 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhc-C-cEEEEeCCcC
Confidence 46666779999999999999999876 8 9999998843
No 376
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=21.85 E-value=3.7e+02 Score=24.28 Aligned_cols=31 Identities=35% Similarity=0.451 Sum_probs=22.4
Q ss_pred CceEEE-eCCCcchHH-HHHHHhCCCcEEEecc
Q 011381 118 RLVALV-VDPFGSAAF-DVANEVGVPAYVFFTT 148 (487)
Q Consensus 118 ~~D~VI-~D~~~~~~~-~~A~~lgIP~v~~~~~ 148 (487)
.||+|| .|+..--.+ .=|.++|||.|.+.-+
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDT 146 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDT 146 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeC
Confidence 788765 777544433 5788999999987654
No 377
>PRK09620 hypothetical protein; Provisional
Probab=21.82 E-value=1.1e+02 Score=28.17 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCCEEEEEecC
Q 011381 29 VELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 29 l~La~~L~~~~GH~Vt~~~~~ 49 (487)
..||++|.++ |++|+++...
T Consensus 33 s~LA~~L~~~-Ga~V~li~g~ 52 (229)
T PRK09620 33 RIIAEELISK-GAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHC-CCeEEEEeCC
Confidence 6789999775 9999998754
No 378
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=21.77 E-value=2.2e+02 Score=26.62 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 11 RAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
.-.+++...|+.|...=.+.++...+++ |..|.+++....
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~ 62 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEES 62 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCC
Confidence 3467888889999999999999999876 999999998754
No 379
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=21.47 E-value=17 Score=20.19 Aligned_cols=17 Identities=29% Similarity=0.677 Sum_probs=12.9
Q ss_pred CchhHHHHHhhCCceec
Q 011381 378 GWNSILESIVHGVPIIA 394 (487)
Q Consensus 378 G~gt~~eal~~GvP~v~ 394 (487)
|.|+++-.|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888888888888654
No 380
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=21.42 E-value=67 Score=29.28 Aligned_cols=31 Identities=6% Similarity=0.049 Sum_probs=25.0
Q ss_pred CCccChHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011381 20 PGIGHLIPLVELAKRLVHQYNFLVTIFIPTID 51 (487)
Q Consensus 20 ~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~ 51 (487)
-+..|+.-.+.+...++.+ |=.+.|+++...
T Consensus 89 qT~~~Lr~A~~fVa~vA~r-~GiILFv~tn~~ 119 (251)
T KOG0832|consen 89 QTASYLRRALNFVAHVAHR-GGIILFVGTNNG 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCeEEEEecCcc
Confidence 3567888888899999886 889999987655
No 381
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=21.40 E-value=8.2e+02 Score=24.35 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=26.1
Q ss_pred CcEEEEEc-CCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 11 RAYVAMVP-TPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 11 ~~~il~~~-~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
.++|+++. .|..|. .||+.|.++ ||+|+++...
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~-G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLS-GYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHC-CCeEEEeCCC
Confidence 46899997 788875 688999665 9999988753
No 382
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=21.39 E-value=3e+02 Score=27.62 Aligned_cols=50 Identities=20% Similarity=0.221 Sum_probs=31.6
Q ss_pred hCCceecccccccchhhhHh-hhcccceeEE---EeecCCCccCHHHHHHHHHHh
Q 011381 388 HGVPIIAWPLYSEQKMNAVL-LTDDLKVSFR---VKVNENGLVGREDIANYAKGL 438 (487)
Q Consensus 388 ~GvP~v~~P~~~DQ~~na~~-v~~~~G~G~~---l~~~~~~~~~~~~l~~av~~v 438 (487)
-|||+|-+-+-.|-...-.. .++ .|.|.. .-.++.+.+++|+|.+-|++.
T Consensus 499 RGvpqIEVtFevDangiL~VsAeD-Kgtg~~~kitItNd~~rLt~EdIerMv~eA 552 (663)
T KOG0100|consen 499 RGVPQIEVTFEVDANGILQVSAED-KGTGKKEKITITNDKGRLTPEDIERMVNEA 552 (663)
T ss_pred CCCccEEEEEEEccCceEEEEeec-cCCCCcceEEEecCCCCCCHHHHHHHHHHH
Confidence 46888877776664433322 233 566632 223445679999999888876
No 383
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=21.33 E-value=7.2e+02 Score=23.72 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCccChHHHHHHHHHHHhc-CCCEEEEEecC
Q 011381 8 QIPRAYVAMVPTPGIGHLIPLVELAKRLVHQ-YNFLVTIFIPT 49 (487)
Q Consensus 8 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~~-~GH~Vt~~~~~ 49 (487)
.++++||+++..+.-+. +.+|.++.... .+++|..+.+.
T Consensus 86 ~~~~~ri~vl~Sg~gsn---l~al~~~~~~~~~~~~i~~visn 125 (286)
T PRK06027 86 SAERKRVVILVSKEDHC---LGDLLWRWRSGELPVEIAAVISN 125 (286)
T ss_pred cccCcEEEEEEcCCCCC---HHHHHHHHHcCCCCcEEEEEEEc
Confidence 45678999988777444 44555555321 25888877654
No 384
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=21.20 E-value=1e+02 Score=25.73 Aligned_cols=28 Identities=14% Similarity=0.003 Sum_probs=20.8
Q ss_pred CccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 21 GIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 21 ~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
..-.+.-.+-|+..|.++ ||+|++++++
T Consensus 9 ~Pvq~p~alYl~~~Lk~~-G~~v~Va~np 36 (139)
T PF09001_consen 9 VPVQTPSALYLSYKLKKK-GFEVVVAGNP 36 (139)
T ss_dssp STTHHHHHHHHHHHHHCT-TEEEEEEE-H
T ss_pred CcchhHHHHHHHHHHHhc-CCeEEEecCH
Confidence 344455678899999654 9999999987
No 385
>PRK00784 cobyric acid synthase; Provisional
Probab=21.16 E-value=9.4e+02 Score=24.97 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=27.9
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhcCCCEEEEEec
Q 011381 13 YVAMVPT-PGIGHLIPLVELAKRLVHQYNFLVTIFIP 48 (487)
Q Consensus 13 ~il~~~~-~~~GH~~p~l~La~~L~~~~GH~Vt~~~~ 48 (487)
+|++... ..-|-..-...|+++|+++ |++|..+-+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~-G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARR-GYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEecccc
Confidence 4666644 5689999999999999765 999987765
No 386
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=21.08 E-value=1.9e+02 Score=30.65 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=21.2
Q ss_pred ccccccCc------hhHHHHHhhCCceecccc
Q 011381 372 GFLSHCGW------NSILESIVHGVPIIAWPL 397 (487)
Q Consensus 372 ~~I~HgG~------gt~~eal~~GvP~v~~P~ 397 (487)
+++.|.|- +.+.||-..++|||+|.-
T Consensus 75 v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~IsG 106 (568)
T PRK07449 75 AVIVTSGTAVANLYPAVIEAGLTGVPLIVLTA 106 (568)
T ss_pred EEEECCccHHHhhhHHHHHHhhcCCcEEEEEC
Confidence 66777774 488999999999999953
No 387
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.05 E-value=6.8e+02 Score=23.28 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=26.5
Q ss_pred HHHHHHHHHhccCCceEEEeCCCcchH---HHHHHHhCCCcEE
Q 011381 105 SLRDALKVLAESTRLVALVVDPFGSAA---FDVANEVGVPAYV 144 (487)
Q Consensus 105 ~l~~~l~~~~~~~~~D~VI~D~~~~~~---~~~A~~lgIP~v~ 144 (487)
.|+..++++- +-++.+.|..+.+. ..+|+..|||++.
T Consensus 139 aM~~~m~~Lk---~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 139 AMEKLMEALK---ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHH---HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 3444555442 67899999888765 3689999999875
No 388
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=20.92 E-value=1.9e+02 Score=30.60 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHhccCCceEEE----eCCCcchHHHHHHHhCCCcEEEecch
Q 011381 102 SLSSLRDALKVLAESTRLVALV----VDPFGSAAFDVANEVGVPAYVFFTTT 149 (487)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~D~VI----~D~~~~~~~~~A~~lgIP~v~~~~~~ 149 (487)
+.+.+.+.++..++.+.+|.+| +|-..+.....|-+++||.|++...+
T Consensus 95 sRelIAdsiE~~~~a~~~Dg~v~i~~CDK~~PG~lMaa~rlniPsi~v~gGp 146 (571)
T PRK06131 95 YRNLAAMDVEEMIRGYPIDGVVLLGGCDKTTPALLMGAASVDLPAIVLSGGP 146 (571)
T ss_pred cHHHHHHHHHHHHhcCCcceEEEEeeCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 4455667777777778999777 67777777778889999999987553
No 389
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=20.89 E-value=63 Score=34.45 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=21.5
Q ss_pred ccccccCchh------HHHHHhhCCceeccc
Q 011381 372 GFLSHCGWNS------ILESIVHGVPIIAWP 396 (487)
Q Consensus 372 ~~I~HgG~gt------~~eal~~GvP~v~~P 396 (487)
++++|.|-|. +.||...++|+|+|-
T Consensus 77 v~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~ 107 (578)
T PRK06112 77 VVTAQNGPAATLLVAPLAEALKASVPIVALV 107 (578)
T ss_pred EEEeCCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 6777788775 999999999999985
No 390
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.87 E-value=8.3e+02 Score=24.24 Aligned_cols=129 Identities=12% Similarity=0.053 Sum_probs=73.9
Q ss_pred CCCCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCEEEEEecCCCCCCCCchhHHHHHhhcCCCCceEEeCCCCCCCCCC
Q 011381 7 KQIPRAYVAMVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPTIDDGTGSSIQTIRQVLESLPTSISTIFLPPVSFDDLP 86 (487)
Q Consensus 7 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (487)
..+++.|+.++..+--||--.|--=|..|++. |.+|.+++-... -+ ..++.. ..++.+++++.....+..
T Consensus 8 ~~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~-gf~VdliGy~~s----~p---~e~l~~--hprI~ih~m~~l~~~~~~ 77 (444)
T KOG2941|consen 8 NKSKKKRAIVVVLGDVGRSPRMQYHALSLAKL-GFQVDLIGYVES----IP---LEELLN--HPRIRIHGMPNLPFLQGG 77 (444)
T ss_pred cccccceEEEEEecccCCChHHHHHHHHHHHc-CCeEEEEEecCC----CC---hHHHhc--CCceEEEeCCCCcccCCC
Confidence 34567799999999999999999999999765 999999884322 11 334444 347999998865422211
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHhccCCceEEEeC-CCcchHHHHH----HHhCCCcEEEecchHH
Q 011381 87 DDFQIETRITLTLVRSLSSLRDALKVLAESTRLVALVVD-PFGSAAFDVA----NEVGVPAYVFFTTTAM 151 (487)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~D~VI~D-~~~~~~~~~A----~~lgIP~v~~~~~~~~ 151 (487)
..... ......-++-.++-.+..-.++|.++.. +-+.....+| ...|...++=|..-.+
T Consensus 78 --p~~~~----l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Y 141 (444)
T KOG2941|consen 78 --PRVLF----LPLKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGY 141 (444)
T ss_pred --chhhh----hHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHH
Confidence 11111 1111111111222233234588877754 3333333333 3347777777765433
No 391
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=20.81 E-value=2.6e+02 Score=26.61 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=22.9
Q ss_pred EEcCCCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 011381 16 MVPTPGIGHLIPLVELAKRLVHQYNFLVTIFIPT 49 (487)
Q Consensus 16 ~~~~~~~GH~~p~l~La~~L~~~~GH~Vt~~~~~ 49 (487)
...+.-.|+=--+..+.++| .. |.++++++..
T Consensus 6 yyG~~N~GDe~~l~~~l~~l-~~-~~~~~v~s~~ 37 (298)
T TIGR03609 6 YYGFGNLGDEALLAALLREL-PP-GVEPTVLSND 37 (298)
T ss_pred ecCCCCcchHHHHHHHHHhc-CC-CCeEEEecCC
Confidence 34455677777778888888 44 8888888754
No 392
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=20.63 E-value=1.9e+02 Score=30.73 Aligned_cols=48 Identities=21% Similarity=0.104 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHhccCCceEEE----eCCCcchHHHHHHHhCCCcEEEecch
Q 011381 102 SLSSLRDALKVLAESTRLVALV----VDPFGSAAFDVANEVGVPAYVFFTTT 149 (487)
Q Consensus 102 ~~~~l~~~l~~~~~~~~~D~VI----~D~~~~~~~~~A~~lgIP~v~~~~~~ 149 (487)
+.+.+.+.++..++.+.+|.+| +|=..+..+.+|.+++||.|++...+
T Consensus 104 sRelIAd~iE~~~~a~~~Dg~V~i~gCDK~~PG~lMaaarlniP~i~v~GG~ 155 (596)
T PRK13017 104 DRNLAYLGLVEILYGYPLDGVVLTTGCDKTTPACLMAAATVDLPAIVLSGGP 155 (596)
T ss_pred CHHHHHHHHHHHHhcCCcceEEEeccCCCccHHHHHHHHhcCCCEEEEeCCC
Confidence 4455667777777778999877 67766677778889999999887553
No 393
>CHL00067 rps2 ribosomal protein S2
Probab=20.57 E-value=6.7e+02 Score=23.06 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=22.4
Q ss_pred CCceEEE-eCCCcc-hHHHHHHHhCCCcEEEecc
Q 011381 117 TRLVALV-VDPFGS-AAFDVANEVGVPAYVFFTT 148 (487)
Q Consensus 117 ~~~D~VI-~D~~~~-~~~~~A~~lgIP~v~~~~~ 148 (487)
..||+|| .|+-.- -+..=|.++|||.|.+.-+
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDT 193 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDT 193 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeC
Confidence 4699766 666443 3446788999999987644
No 394
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.53 E-value=3e+02 Score=27.13 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=52.2
Q ss_pred eCCCcCCCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCC-CceeccCCCcccc
Q 011381 286 FGSGGTLSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGV-GLVVPSWAPQAQV 364 (487)
Q Consensus 286 ~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~-~v~~~~~~pq~~i 364 (487)
+|-|+.+.--....+.++|+-+..+||++..+... -++.....|++.+.+.+.. +++.+.|-|
T Consensus 244 LGMmVDLShvS~atm~~aL~vS~APVIFSHSsA~~------------vcns~rNVPDdVL~llk~NgGvVMVnfy~---- 307 (419)
T KOG4127|consen 244 LGMMVDLSHVSDATMRDALEVSRAPVIFSHSSAYS------------VCNSSRNVPDDVLQLLKENGGVVMVNFYP---- 307 (419)
T ss_pred hhheeehhhcCHHHHHHHHHhhcCceEeecccHHH------------HhcCccCCcHHHHHHHhhcCCEEEEEeec----
Confidence 45554444444567888999999999998766432 1334467899888887754 555555332
Q ss_pred cccCcccccccccCchhHHHHHhh
Q 011381 365 LSHGSTGGFLSHCGWNSILESIVH 388 (487)
Q Consensus 365 L~~~~~~~~I~HgG~gt~~eal~~ 388 (487)
-||.++.--++.+++.|
T Consensus 308 -------~~isc~~~A~v~~v~~H 324 (419)
T KOG4127|consen 308 -------GFISCSDRATVSDVADH 324 (419)
T ss_pred -------ccccCCCcccHHHHHHH
Confidence 57776776777777643
No 395
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.48 E-value=1.2e+02 Score=26.39 Aligned_cols=30 Identities=13% Similarity=0.115 Sum_probs=20.0
Q ss_pred CCceEEEeCCCcch--HHHHHHHhCCCcEEEe
Q 011381 117 TRLVALVVDPFGSA--AFDVANEVGVPAYVFF 146 (487)
Q Consensus 117 ~~~D~VI~D~~~~~--~~~~A~~lgIP~v~~~ 146 (487)
.+||+||....... ....-+..|||++.+.
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 49999997553332 2234567899987763
No 396
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=20.38 E-value=3.7e+02 Score=19.99 Aligned_cols=49 Identities=16% Similarity=0.172 Sum_probs=35.1
Q ss_pred cCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcC
Q 011381 426 VGREDIANYAKGLIQGEEGKLLRKKMRALKDAAANALSPDGSSTKSLAQLARIWKNP 482 (487)
Q Consensus 426 ~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 482 (487)
..++.+.+-++.++++ +|.+.-..+.+.+. +|-+....+.++.+.+.+.
T Consensus 3 p~~~~i~~i~~~~~~~----~~~~~~~~~~~l~~----~G~s~~~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 3 PPPEVIEEILESCLNG----DFKEARKKLYELLV----EGYSASDILKQLHEVLVES 51 (89)
T ss_dssp --HHHHHHHHHHHHHT----CHHHHHHHHHHHHH----TT--HHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhC----CHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHh
Confidence 4577788888777764 67777777777776 5889999999999988775
No 397
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=20.32 E-value=3.2e+02 Score=24.71 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=21.1
Q ss_pred CCceEEE-eCCCcc-hHHHHHHHhCCCcEEEecc
Q 011381 117 TRLVALV-VDPFGS-AAFDVANEVGVPAYVFFTT 148 (487)
Q Consensus 117 ~~~D~VI-~D~~~~-~~~~~A~~lgIP~v~~~~~ 148 (487)
..||+|| .|+-.- .+..=|.++|||.|.+.-+
T Consensus 142 ~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dt 175 (211)
T PF00318_consen 142 KLPDLVIILDPNKNKNAIREANKLNIPTIAIVDT 175 (211)
T ss_dssp SSBSEEEESSTTTTHHHHHHHHHTTS-EEEEEST
T ss_pred ccCcEEEEecccccchhHHHHHhcCceEEEeecC
Confidence 3599776 565433 3445788899999987644
No 398
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=20.00 E-value=1.1e+02 Score=29.70 Aligned_cols=73 Identities=10% Similarity=0.062 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEEeCCCccccccccccccCCCCCCCCCchhHHHhhcCCCceeccCCCcccccccCccc
Q 011381 292 LSQEQLNELALGLEMSGQRFLWVAKSPHEEAANATYFSVQSMKDPLDFLPKGFLDRTKGVGLVVPSWAPQAQVLSHGSTG 371 (487)
Q Consensus 292 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~~pq~~iL~~~~~~ 371 (487)
.+.+..+.+.+++..-+.+.||.+..+.. -.++.++++...+-.+++
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g-------------------------------~~rlL~~lD~~~i~~~PK-- 96 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGDD-------------------------------SNELLPYLDYELIKKNPK-- 96 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCcccC-------------------------------HhhhhhhcCHHHHhhCCC--
Confidence 36677888999998888899998777543 123344455555555555
Q ss_pred ccccccCchhHHHHHh--hCCceecccc
Q 011381 372 GFLSHCGWNSILESIV--HGVPIIAWPL 397 (487)
Q Consensus 372 ~~I~HgG~gt~~eal~--~GvP~v~~P~ 397 (487)
.||=..-..+++-+++ +|++.+-=|+
T Consensus 97 ~fiGySDiTaL~~al~~~~g~~t~hGp~ 124 (308)
T cd07062 97 IFIGYSDITALHLAIYKKTGLVTYYGPN 124 (308)
T ss_pred EEEeccHHHHHHHHHHHhcCCeEEECcc
Confidence 6666666666666653 2454444444
Done!