BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011382
(487 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O43719|HTSF1_HUMAN HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1
Length = 755
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 135/280 (48%), Gaps = 32/280 (11%)
Query: 184 TRYKWDRGLRAWVPQEDTSSQNDGYGIEEMTFLKEEEVFPTVNVTDDLANDEVGKEKLNS 243
T Y+WD +AW P+ +T E+ T +ND N
Sbjct: 48 TPYEWDLDKKAWFPK--------------IT----EDFIATYQANYGFSNDGASSSTANV 89
Query: 244 TEEKVNSADNVVEEKHNGKRKQPDKQVEKKEANKPPDSWFELK--VNTHVYVTGLPDDVT 301
+ +A+ +EK +P +K E K WF ++ NT+VYV+GLP D+T
Sbjct: 90 EDVHARTAEEPPQEKA----PEPTDARKKGEKRKAESGWFHVEEDRNTNVYVSGLPPDIT 145
Query: 302 VEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361
V+E +++ SK GII DP+T++ ++K+Y D + G KGD L YLK SV LA +LLD
Sbjct: 146 VDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQ-GNLKGDGLCCYLKRESVELALKLLDED 204
Query: 362 PFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLK-KVEEKMLGWGGRDDA---KLT 417
R + V AKF+ KGE +K+ K K K +++K L W A ++
Sbjct: 205 EIR---GYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSMQQKQLDWRPERRAGPSRMR 261
Query: 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPV 457
VI++ MF P + D + +E+ D++ EC K G +
Sbjct: 262 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQI 301
>sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2
SV=1
Length = 754
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 135/280 (48%), Gaps = 32/280 (11%)
Query: 184 TRYKWDRGLRAWVPQEDTSSQNDGYGIEEMTFLKEEEVFPTVNVTDDLANDEVGKEKLNS 243
T Y+WD +AW P+ +T E+ T +ND N
Sbjct: 48 TPYEWDLDKKAWFPK--------------IT----EDFIATYQANYGFSNDGASSSTANV 89
Query: 244 TEEKVNSADNVVEEKHNGKRKQPDKQVEKKEANKPPDSWFELK--VNTHVYVTGLPDDVT 301
+ +A+ +EK +P +K E K WF ++ NT+VYV+GLP D+T
Sbjct: 90 EDVHARTAEEPPQEKA----PEPTDPRKKGEKRKAESGWFHVEEDRNTNVYVSGLPPDIT 145
Query: 302 VEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361
V+E +++ SK GII DP+T++ ++K+Y D + G KGD L YLK SV LA +LLD
Sbjct: 146 VDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQ-GNLKGDGLCCYLKRESVELALKLLDED 204
Query: 362 PFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLK-KVEEKMLGWGGRDDA---KLT 417
R + V AKF+ KGE +K+ K K K +++K L W A ++
Sbjct: 205 EIR---GYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSMQQKQLDWRPERRAGPSRMR 261
Query: 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPV 457
VI++ MF P + D + +E+ D++ EC K G +
Sbjct: 262 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQI 301
>sp|Q8BGC0|HTSF1_MOUSE HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1
SV=1
Length = 757
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 141/285 (49%), Gaps = 38/285 (13%)
Query: 182 DGTRYKWDRGLRAWVPQ--ED-TSSQNDGYGIEEMTFLKEEEVFPTVNVTDDLANDEVGK 238
D T Y+WD +AW P+ ED ++ YG F + T NV D AN + +
Sbjct: 47 DDTPYEWDLDKKAWFPKITEDFIATYQANYG-----FSSDGASSSTANVQD--ANTKAVE 99
Query: 239 EKLNSTEEKVNSADNVVEEKHNGKRKQPDKQVEKKEANKPPDSWFELK--VNTHVYVTGL 296
E V E + KRK ++ E WF ++ NT+VYV+GL
Sbjct: 100 EPPQKE----------VPETPDSKRKGEKRKAES--------GWFHVEEDRNTNVYVSGL 141
Query: 297 PDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQ 356
P D+TV+E +++ SK GII DP+T++ ++K+Y D + G KGD L YLK+ SV LA +
Sbjct: 142 PPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKD-DQGNLKGDGLCCYLKKESVELALK 200
Query: 357 LLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLK-KVEEKMLGWGGRDDA- 414
LLD R + V AKF+ KGE +K+ K K K +++K L W A
Sbjct: 201 LLDEDEIR---GYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSLQQKQLDWRPERRAG 257
Query: 415 --KLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPV 457
+L VIL+ MF P + D + +E+ D++ EC K G +
Sbjct: 258 PNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQI 302
>sp|O43120|UAP2_SCHPO Splicing factor U2AF-associated protein 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=uap2 PE=1 SV=1
Length = 367
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 97/183 (53%), Gaps = 10/183 (5%)
Query: 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYL 346
+N VY+ GLP DVTV+E+ EVF KCG+I ++ + PRIKIY E G KGDAL+ +
Sbjct: 108 INKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIKIY-RTEDGTPKGDALIVFF 166
Query: 347 KEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVE---- 402
+ SV LA QL D T FR M V +A + K E+ + K V KKK ++
Sbjct: 167 RSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKKKALRLRQQQM 226
Query: 403 EKMLGWGGRDDA-----KLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPV 457
+++ W D+ K V+L+ +FT E+ L +L+ D+ EE K G V
Sbjct: 227 QQISSWDDVDEEVDDKRKKRFNKIVVLKHIFTLEELDKTPELLIDLKDDITEEAEKCGRV 286
Query: 458 DSV 460
+V
Sbjct: 287 TNV 289
>sp|Q61545|EWS_MOUSE RNA-binding protein EWS OS=Mus musculus GN=Ewsr1 PE=1 SV=2
Length = 655
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%)
Query: 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLK 347
N+ +YV GL D+VT++++ + F +CG++K + T +P I IY+DKETG KGDA V+Y
Sbjct: 359 NSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 418
Query: 348 EPSVALATQLLDGTPFR 364
P+ A + DG F+
Sbjct: 419 PPTAKAAVEWFDGKDFQ 435
>sp|P53830|CUS2_YEAST Cold sensitive U2 snRNA suppressor 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CUS2 PE=1 SV=1
Length = 285
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 106/187 (56%), Gaps = 18/187 (9%)
Query: 288 NTHVYVTGLPDDVTVEE-MVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYL 346
NT +Y++GLP D T +E + E F K G+I+ + + + P K+YV+ + G KGDAL+TY
Sbjct: 44 NTSIYISGLPTDKTTKEGLTEQFCKYGMIRTNRDGE-PLCKLYVN-DKGAFKGDALITYS 101
Query: 347 KEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQK-GERFIAKQVDSKK-------KKKL 398
KE SV LA ++++ + F GK + V +A+F+ K G+ K+ D K+ K+L
Sbjct: 102 KEESVTLAIEMMNESIFL--GK-QIRVERAQFQNKEGDNMHGKENDLKEFNGPEPPIKRL 158
Query: 399 KKVEEKMLG--WGGRDDAKLT-IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIG 455
KK + + G DD L TVI +F + ++++ ++++ D+ E C +IG
Sbjct: 159 KKAKSEGEGEVIDYNDDESLAKADRTVIFANVFNIYKSYTNDDI-NDIQEDLLEGCEEIG 217
Query: 456 PVDSVKV 462
VDS+ V
Sbjct: 218 QVDSISV 224
>sp|Q01844|EWS_HUMAN RNA-binding protein EWS OS=Homo sapiens GN=EWSR1 PE=1 SV=1
Length = 656
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%)
Query: 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLK 347
N+ +YV GL D VT++++ + F +CG++K + T +P I IY+DKETG KGDA V+Y
Sbjct: 360 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 419
Query: 348 EPSVALATQLLDGTPFR 364
P+ A + DG F+
Sbjct: 420 PPTAKAAVEWFDGKDFQ 436
>sp|P56959|FUS_MOUSE RNA-binding protein FUS OS=Mus musculus GN=Fus PE=2 SV=1
Length = 518
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLK 347
N ++V GL ++VT+E + + F + GIIK + +T +P I +Y D+ETG KG+A V++
Sbjct: 277 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 336
Query: 348 EPSVALATQLLDGTPFRPDG-KIPMSVTQAKF 378
PS A DG F + K+ + +A F
Sbjct: 337 PPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 368
>sp|Q28009|FUS_BOVIN RNA-binding protein FUS OS=Bos taurus GN=FUS PE=2 SV=2
Length = 513
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLK 347
N ++V GL ++VT+E + + F + GIIK + +T +P I +Y D+ETG KG+A V++
Sbjct: 271 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 330
Query: 348 EPSVALATQLLDGTPFRPDG-KIPMSVTQAKF 378
PS A DG F + K+ + +A F
Sbjct: 331 PPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 362
>sp|P35637|FUS_HUMAN RNA-binding protein FUS OS=Homo sapiens GN=FUS PE=1 SV=1
Length = 526
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLK 347
N ++V GL ++VT+E + + F + GIIK + +T +P I +Y D+ETG KG+A V++
Sbjct: 284 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 343
Query: 348 EPSVALATQLLDGTPFRPDG-KIPMSVTQAKF 378
PS A DG F + K+ + +A F
Sbjct: 344 PPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 375
>sp|Q92804|RBP56_HUMAN TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15
PE=1 SV=1
Length = 592
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 280 DSWFELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKG 339
DS + N ++V GL + V+ +++ E F + GIIK + +T KP I +Y DK+TG KG
Sbjct: 225 DSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKG 284
Query: 340 DALVTYLKEPSVALATQLLDGTPFR 364
+A V++ PS A DG F
Sbjct: 285 EATVSFDDPPSAKAAIDWFDGKEFH 309
>sp|Q27294|CAZ_DROME RNA-binding protein cabeza OS=Drosophila melanogaster GN=caz PE=2
SV=2
Length = 399
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 291 VYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPS 350
++V+G+ T +++ F GIIK+D T KP+I +Y +KETG KG+A VTY +
Sbjct: 122 IFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTYDDTNA 181
Query: 351 VALATQLLDGTPFRPDGKIPMSVTQ 375
A + DG F + I +S+ Q
Sbjct: 182 AQSAIEWFDGRDFNGNA-IKVSLAQ 205
>sp|O75165|DJC13_HUMAN DnaJ homolog subfamily C member 13 OS=Homo sapiens GN=DNAJC13 PE=1
SV=5
Length = 2243
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 12 LSGATNYETAGEEGWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQGRSEWQPLS 71
+ A + + E+ WY + +++ GPY E+ E + G L T W+QG W+PL
Sbjct: 962 IEAAPDMKRESEKEWYFGNADKERSGPYGFHEMQELWTKGMLNAKTRCWAQGMDGWRPLQ 1021
Query: 72 SIPQF 76
SIPQ
Sbjct: 1022 SIPQL 1026
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 271 EKKEANKPPDSWF---ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIK 327
++K PPDS + + + T V+V +P D+ +E+V +F K G I + ++
Sbjct: 144 QRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWD--------LR 195
Query: 328 IYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQA 376
+ +D +G +G A +T+ + + A +L D RP + + ++ A
Sbjct: 196 LMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVA 244
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 271 EKKEANKPPDSWF---ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIK 327
++K PPDS + + V T ++V +P D+ +E+V +F K G I + ++
Sbjct: 51 QRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWD--------LR 102
Query: 328 IYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQA 376
+ +D TG+ +G A VT+ + + A +L + R I + ++ A
Sbjct: 103 LMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVA 151
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 271 EKKEANKPPDSWF---ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIK 327
++K PPDS + + V T ++V +P D+ +E+V +F K G I + ++
Sbjct: 141 QRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWD--------LR 192
Query: 328 IYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQA 376
+ +D TG+ +G A VT+ + + A +L + R I + ++ A
Sbjct: 193 LMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVA 241
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 271 EKKEANKPPDSWF---ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIK 327
++K PPDS + + V T ++V +P D+ +E+V +F K G I + ++
Sbjct: 141 QRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWD--------LR 192
Query: 328 IYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQA 376
+ +D TG+ +G A VT+ + + A +L + R I + ++ A
Sbjct: 193 LMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVA 241
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 281 SWF-ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKG 339
SW + K + +VYV G+P D+T +++ VFS+ G I + + + DK TG KG
Sbjct: 27 SWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVD--------VNLIRDKGTGKSKG 78
Query: 340 DALVTYLKEPSVALATQLLDGT 361
A + Y + S LA L+G
Sbjct: 79 FAFLAYEDQRSTILAVDNLNGA 100
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 281 SWF-ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKG 339
SW + K + +V+V G+P D+T +++ VF++ G + + + + DK TG KG
Sbjct: 27 SWHAKFKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVD--------VNLVRDKGTGKSKG 78
Query: 340 DALVTYLKEPSVALATQLLDGT 361
A + Y + S LA L+G
Sbjct: 79 FAFLAYEDQRSTILAVDNLNGA 100
>sp|O43040|CTF1_SCHPO Cleavage and termination factor 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ctf1 PE=1 SV=1
Length = 363
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 291 VYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPS 350
V+V +P DV+ ++M E+F++ G +K K+ +D ETG KG + +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKT--------FKLVLDPETGSGKGYGFCEFFDSET 60
Query: 351 VALATQLLDGTPFRP 365
A+A + L+ + P
Sbjct: 61 TAMAVRKLNNSELGP 75
>sp|P78795|EIF3G_SCHPO Eukaryotic translation initiation factor 3 subunit G
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tif35 PE=1 SV=2
Length = 282
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 291 VYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPS 350
+ VT L DD EE+ ++F + G I+ R+ + DKETG KG A V+Y
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQ--------RVYLAKDKETGRAKGFAFVSYYDRDC 255
Query: 351 VALATQLLDG 360
A LDG
Sbjct: 256 AIKARDRLDG 265
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 243 STEEKVNSADNVVEEKHNGKRKQPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDVTV 302
+T EKV++A N K +G+ +P + V ++++ +P L V ++V G+ +D
Sbjct: 63 ATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA---HLTVKK-IFVGGIKEDTEE 118
Query: 303 EEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSV 351
+ + F + G I+ I+I D+ +G K+G A VT+ SV
Sbjct: 119 HHLRDYFEQYGKIEV--------IEIMTDRGSGKKRGFAFVTFDDHNSV 159
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 39.3 bits (90), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 20/102 (19%)
Query: 246 EKVNSADNVVEEKH--NGKRKQPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDVTVE 303
EK +S D VV+ +H +GK P + + + E +K ++V G+ DV +
Sbjct: 208 EKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDK----------TGKIFVGGIGPDVRPK 257
Query: 304 EMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTY 345
E E FS+ G I + ++ +DK+TG +G VTY
Sbjct: 258 EFEEFFSQWGTIID--------AQLMLDKDTGQSRGFGFVTY 291
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTY 345
K + +++ GL D T + + E F K G + + +KI D TG +G +++
Sbjct: 156 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTD--------LKIMKDPATGRSRGFGFLSF 207
Query: 346 LKEPSV--ALATQ-LLDGTPFRPDGKIP 370
K SV + TQ +LDG P IP
Sbjct: 208 EKPSSVDEVVKTQHILDGKVIDPKRAIP 235
>sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=mrd1 PE=3 SV=1
Length = 825
Score = 38.9 bits (89), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 284 ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALV 343
+++++ ++V LP D + ++ VFSK G I+E I + D + KG A V
Sbjct: 296 HIRLSSRLFVRNLPYDASESDLEPVFSKFGKIEE--------IHVAFDTRSTTSKGFAYV 347
Query: 344 TYLKEPSVALATQLLDGTPFR 364
Y++ + A + LDG F+
Sbjct: 348 QYIEPDAAVQAYKELDGKHFQ 368
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 38.9 bits (89), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 291 VYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPS 350
VYV + VT EE+ F+ CG + R+ I DK TG KG A + + EPS
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVN--------RVTILCDKFTGHPKGFAYIEF-SEPS 107
Query: 351 VALATQLLDGT 361
+ LL+G+
Sbjct: 108 LVPNALLLNGS 118
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 281 SWF-ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKG 339
SW E K + ++V GLP ++T +++ VFS+ G I I + DK+TG KG
Sbjct: 27 SWHSEYKHSAWIFVGGLPYELTEGDIICVFSQYGEIVN--------INLVRDKKTGKSKG 78
Query: 340 DALVTYLKEPSVALATQLLDG 360
+ Y + S LA +G
Sbjct: 79 FCFLCYEDQRSTVLAVDNFNG 99
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 243 STEEKVNSADNVVEEKHNGKRKQPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDVTV 302
+T E+V++A N K +G+ +P + V ++++ +P L V ++V G+ +D
Sbjct: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGA---HLTVKK-IFVGGIKEDTEE 118
Query: 303 EEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSV 351
+ + F + G I+ I+I D+ +G K+G A VT+ SV
Sbjct: 119 HHLRDYFEQYGKIEV--------IEIMTDRGSGKKRGFAFVTFDDHDSV 159
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 260 NGKRKQPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDP 319
+G++ +K + + P FE + VYV LP DV + ++FS+ G
Sbjct: 122 DGRQLTVNKAAPRGSPERAPRGDFEP--SCRVYVGNLPWDVDTSRLEQLFSEHG------ 173
Query: 320 ETKKPRIKIYVDKETGMKKGDALVTYLKEPSV-----ALATQLLDGTPFR 364
K ++ D+ETG +G VT E V AL Q LDG R
Sbjct: 174 --KVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVR 221
>sp|B5G279|NCBP2_TAEGU Nuclear cap-binding protein subunit 2 OS=Taeniopygia guttata
GN=NCBP2 PE=2 SV=1
Length = 168
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 20/140 (14%)
Query: 241 LNSTEEKVNSADNVVEEKHNGKRKQPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDV 300
L++T +NS ++ + + +Q+++K LK+++ +YV L
Sbjct: 5 LHTTLSGLNSDSYCEISQYRDQHFRGSRQLQEKS----------LKISSTLYVGNLSFYT 54
Query: 301 TVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG 360
T E++ E+FSKCG +K RI + +DK G V Y A + ++G
Sbjct: 55 TEEQIQELFSKCGDVK--------RIVMGLDKIKKTPCGFCFVEYYTRADAEHAMRFING 106
Query: 361 TPFRPDGKIPMSVTQAKFEQ 380
T R D +I + A F++
Sbjct: 107 T--RLDDRIIRTDWDAGFKE 124
>sp|Q9FMP4|PM14_ARATH Pre-mRNA branch site p14-like protein OS=Arabidopsis thaliana
GN=At5g12190 PE=2 SV=1
Length = 124
Score = 37.7 bits (86), Expect = 0.18, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 26/136 (19%)
Query: 270 VEKKEANKPPDSWFELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIY 329
+ K PP+ VN +YV LP ++T EEM ++F K G I++ I+I
Sbjct: 6 LRKSNTRLPPE------VNRVLYVRNLPFNITSEEMYDIFGKYGAIRQ--------IRIG 51
Query: 330 VDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQ 389
DK T KG A V Y A L G I + AK ++K+
Sbjct: 52 CDKAT---KGTAFVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAK--------MSKK 100
Query: 390 VDSKKKK-KLKKVEEK 404
D KK + ++ K++EK
Sbjct: 101 FDQKKSEDEITKLQEK 116
>sp|Q5ZKR5|NCBP2_CHICK Nuclear cap-binding protein subunit 2 OS=Gallus gallus GN=NCBP2
PE=2 SV=1
Length = 168
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 285 LKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVT 344
LK+++ +YV L T E++ E+FSKCG +K RI + +DK G V
Sbjct: 39 LKISSTLYVGNLSFYTTEEQIQELFSKCGDVK--------RIVMGLDKIKKTPCGFCFVE 90
Query: 345 YLKEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQ 380
Y A + ++GT R D +I + A F++
Sbjct: 91 YYTRADAEHAMRFINGT--RLDDRIVRTDWDAGFKE 124
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 243 STEEKVNSADNVVEEKHNGKRKQPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDVTV 302
+T E+V++A N K +G+ +P + V ++++ +P L V ++V G+ +D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA---HLTVKK-IFVGGIKEDTEE 118
Query: 303 EEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSV 351
+ + F + G I+ I+I D+ +G K+G A VT+ SV
Sbjct: 119 HHLRDYFEQYGKIEV--------IEIMTDRGSGKKRGFAFVTFDDHDSV 159
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 243 STEEKVNSADNVVEEKHNGKRKQPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDVTV 302
+T E+V++A N K +G+ +P + V ++++ +P L V ++V G+ +D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA---HLTVKK-IFVGGIKEDTEE 118
Query: 303 EEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSV 351
+ + F + G I+ I+I D+ +G K+G A VT+ SV
Sbjct: 119 HHLRDYFEQYGKIEV--------IEIMTDRGSGKKRGFAFVTFDDHDSV 159
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 243 STEEKVNSADNVVEEKHNGKRKQPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDVTV 302
+T E+V++A N K +G+ +P + V ++++ +P L V ++V G+ +D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA---HLTVKK-IFVGGIKEDTEE 118
Query: 303 EEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSV 351
+ + F + G I+ I+I D+ +G K+G A VT+ SV
Sbjct: 119 HHLRDYFEQYGKIEV--------IEIMTDRGSGKKRGFAFVTFDDHDSV 159
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 243 STEEKVNSADNVVEEKHNGKRKQPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDVTV 302
+T E+V++A N K +G+ +P + V ++++ +P L V ++V G+ +D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA---HLTVKK-IFVGGIKEDTEE 118
Query: 303 EEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSV 351
+ + F + G I+ I+I D+ +G K+G A VT+ SV
Sbjct: 119 HHLRDYFEQYGKIEV--------IEIMTDRGSGKKRGFAFVTFDDHDSV 159
>sp|Q6C747|EIF3G_YARLI Eukaryotic translation initiation factor 3 subunit G OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TIF35 PE=3 SV=1
Length = 294
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 293 VTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVA 352
VT L ++ T +++ +F K G+I R+ + D++TG +G A VTY +
Sbjct: 218 VTNLSEEATDDDLRRMFGKYGMIN--------RVYVAKDRDTGRPRGFAFVTYTLKSHAQ 269
Query: 353 LATQLLDGTPF 363
A + +DG F
Sbjct: 270 AALEAMDGHGF 280
>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster
GN=U2af50 PE=2 SV=1
Length = 416
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 25/174 (14%)
Query: 291 VYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPS 350
+++ GLP+ + +++ E+ G ++ + D TG+ KG A Y+
Sbjct: 209 IFIGGLPNYLNDDQVKELLLSFGKLRA--------FNLVKDAATGLSKGYAFCEYV---D 257
Query: 351 VALATQLLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGG 410
+++ Q + G G + V +A K + A S ML G
Sbjct: 258 LSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTQSV-----------MLQVPG 306
Query: 411 RDDAKLTIPATVILRF--MFTPAEMRADENLRSELEADVQEECVKIGPVDSVKV 462
+ + P T +L M TP E+R +E LE D++EEC K G V SV++
Sbjct: 307 LSNVVTSGPPTEVLCLLNMVTPDELRDEEEYEDILE-DIKEECTKYGVVRSVEI 359
>sp|Q7SG09|MRD1_NEUCR Multiple RNA-binding domain-containing protein 1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=mrd-1 PE=3 SV=1
Length = 827
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 14/127 (11%)
Query: 279 PDSWFEL-KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMK 337
P+S L + + +++ L VT +++ E F+K GI+ E + + +D + G
Sbjct: 297 PESAISLIEKTSRLFLRNLSYTVTEDDVREHFAKFGILVE--------VHVPLDSK-GHS 347
Query: 338 KGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSV-TQAKFEQKGERFIAKQVDSKKKK 396
KG A++ Y K P+ ALA DGT F+ G+I + AK E K + F ++ KK++
Sbjct: 348 KGFAMIRYEK-PASALAAFQTDGTVFQ--GRIVHILPAAAKRENKLDEFALSKLPLKKQQ 404
Query: 397 KLKKVEE 403
L+K E
Sbjct: 405 LLRKKAE 411
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 243 STEEKVNSADNVVEEKHNGKRKQPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDVTV 302
+T E+V++A N K +G+ +P + V ++++ +P L V ++V G+ +D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA---HLTVKK-IFVGGIKEDTEE 118
Query: 303 EEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSV 351
+ + F + G I+ I+I D+ +G K+G A VT+ SV
Sbjct: 119 HHLRDYFEQYGKIEV--------IEIMTDRGSGKKRGFAFVTFDDHDSV 159
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 281 SWF-ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKG 339
SW E K + +++ GLP ++T +++ VFS+ G I I + DK+TG KG
Sbjct: 27 SWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN--------INLVRDKKTGKSKG 78
Query: 340 DALVTYLKEPSVALATQLLDG 360
+ Y + S LA +G
Sbjct: 79 FCFLCYEDQRSTVLAVDNFNG 99
>sp|Q05AT9|U1SBP_XENLA U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Xenopus
laevis GN=snrnp35 PE=2 SV=1
Length = 272
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 291 VYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPS 350
++V+ L T E++ EVFS+ G IK RI++ D TG KG A + Y +E +
Sbjct: 53 LFVSRLSPQTTEEKLKEVFSRYGDIK--------RIRLVRDFITGFSKGYAFIEYKQENA 104
Query: 351 VALATQ 356
+ A +
Sbjct: 105 IMKAHR 110
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 281 SWF-ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKG 339
SW E K + +++ GLP ++T +++ VFS+ G I I + DK+TG KG
Sbjct: 27 SWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN--------INLVRDKKTGKSKG 78
Query: 340 DALVTYLKEPSVALATQLLDG 360
+ Y + S LA +G
Sbjct: 79 FCFLCYEDQRSTILAVDNFNG 99
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 284 ELKVN-THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDAL 342
E+K N T+VYV + D T EE ++F K G I + D E+G +G
Sbjct: 230 EMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITS--------ATLARDAESGKSRGFGF 281
Query: 343 VTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVE 402
V + + A A + L+ F+ K+ + Q K E++ E + KQ ++ + +K K +
Sbjct: 282 VNFTSHDNAAAAVEALNDKDFKGQ-KLYVGRAQKKHEREEE--LRKQYEAARIEKASKYQ 338
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 36.2 bits (82), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 291 VYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPS 350
++V G+P D T EE F++ G + + + +DK+TG +G VTY E +
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLD--------ATLMMDKDTGRPRGFGFVTYENESA 300
Query: 351 V 351
V
Sbjct: 301 V 301
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 36.2 bits (82), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKE 348
+ VYV+ LP +T ++ +FSK G K ++ I DK+T KG A + +L +
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYG--------KVVKVTIMKDKDTRRSKGVAFILFLDK 61
Query: 349 PSVALATQLLD 359
S T+ ++
Sbjct: 62 DSAQNCTRAIN 72
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 36.2 bits (82), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 243 STEEKVNSADNVVEEKHNGKRKQPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDVTV 302
ST+E V++A K +G+ +P + V ++++++P L V ++V G+ +D
Sbjct: 64 STDE-VDAAMTARPHKVDGRVVEPKRAVSREDSSRPGA---HLTVKK-IFVGGIKEDTEE 118
Query: 303 EEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSV 351
+ + E F + G I+ I+I D+ +G K+G A VT+ SV
Sbjct: 119 DHLREYFEQYGKIEV--------IEIMTDRGSGKKRGFAFVTFEDHDSV 159
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 36.2 bits (82), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKE 348
+ VYV+ LP +T ++ +FSK G K ++ I DK+T KG A + +L +
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYG--------KVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 349 PSVALATQLLD 359
S T+ ++
Sbjct: 62 DSALNCTRAIN 72
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 35.8 bits (81), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKE 348
+ VYV+ LP +T ++ +FSK G K ++ I DK+T KG A + +L +
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYG--------KVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 349 PSVALATQLLD 359
S T+ ++
Sbjct: 62 DSALNCTRAIN 72
>sp|Q44554|RBPB_NOSS1 Putative RNA-binding protein RbpB OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpB PE=3 SV=3
Length = 103
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 291 VYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPS 350
+YV L DVT E + VF++ G +K R+++ VD+ETG +G V +
Sbjct: 3 IYVGNLSYDVTEESLNAVFAEYGSVK--------RVQLPVDRETGRVRGFGFVEMGSDAE 54
Query: 351 VALATQLLDGT 361
A + LDG
Sbjct: 55 ETAAIEALDGA 65
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKE 348
+ VYV+ LP +T ++ +FSK G K ++ I DK+T KG A + +L +
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYG--------KVVKVTIMKDKDTRKSKGVAFILFLDK 61
Query: 349 PSVALATQLLD 359
S T+ ++
Sbjct: 62 DSAQNCTRAIN 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,677,729
Number of Sequences: 539616
Number of extensions: 9079191
Number of successful extensions: 27366
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 411
Number of HSP's that attempted gapping in prelim test: 26726
Number of HSP's gapped (non-prelim): 903
length of query: 487
length of database: 191,569,459
effective HSP length: 121
effective length of query: 366
effective length of database: 126,275,923
effective search space: 46216987818
effective search space used: 46216987818
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)