Query 011382
Match_columns 487
No_of_seqs 472 out of 2405
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 00:44:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1548 Transcription elongati 100.0 3.6E-56 7.7E-61 444.4 20.6 267 185-477 50-323 (382)
2 TIGR01645 half-pint poly-U bin 99.9 2.8E-24 6E-29 234.6 16.3 80 287-377 203-282 (612)
3 TIGR01622 SF-CC1 splicing fact 99.9 7.1E-24 1.5E-28 224.6 17.7 179 287-477 185-419 (457)
4 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.4E-23 3.1E-28 225.0 16.0 174 286-478 293-474 (509)
5 KOG0147 Transcriptional coacti 99.9 1.5E-23 3.2E-28 220.8 10.6 180 287-479 277-501 (549)
6 TIGR01659 sex-lethal sex-letha 99.8 1.1E-18 2.5E-23 180.6 14.8 136 286-477 105-244 (346)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 7.6E-18 1.6E-22 172.3 14.8 134 288-477 3-140 (352)
8 KOG0117 Heterogeneous nuclear 99.8 1.5E-17 3.2E-22 172.1 16.8 177 278-477 71-302 (506)
9 TIGR01645 half-pint poly-U bin 99.7 4.3E-17 9.4E-22 178.5 15.3 148 286-478 105-256 (612)
10 KOG0124 Polypyrimidine tract-b 99.7 7E-17 1.5E-21 163.6 13.6 80 286-376 208-287 (544)
11 KOG0120 Splicing factor U2AF, 99.7 8.9E-18 1.9E-22 178.8 7.0 170 287-478 288-464 (500)
12 TIGR01622 SF-CC1 splicing fact 99.7 3.3E-16 7.1E-21 166.2 16.8 147 286-477 87-237 (457)
13 TIGR01628 PABP-1234 polyadenyl 99.7 2.3E-16 5E-21 172.2 14.3 135 289-477 1-138 (562)
14 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 7.2E-16 1.6E-20 157.7 16.6 83 287-378 88-170 (352)
15 TIGR01648 hnRNP-R-Q heterogene 99.7 7.5E-16 1.6E-20 168.3 15.2 138 278-477 46-191 (578)
16 KOG0148 Apoptosis-promoting RN 99.7 2.7E-16 5.9E-21 154.4 9.7 147 290-478 64-210 (321)
17 TIGR01628 PABP-1234 polyadenyl 99.6 1.7E-15 3.6E-20 165.5 15.8 155 286-477 176-335 (562)
18 PLN03134 glycine-rich RNA-bind 99.6 2.9E-15 6.3E-20 137.2 10.6 81 287-378 33-113 (144)
19 KOG0127 Nucleolar protein fibr 99.6 5.4E-15 1.2E-19 156.2 13.8 77 290-378 119-195 (678)
20 KOG0127 Nucleolar protein fibr 99.6 3.3E-15 7.3E-20 157.7 9.7 157 289-476 6-166 (678)
21 PF14237 DUF4339: Domain of un 99.6 2.3E-15 4.9E-20 111.7 4.3 45 25-70 1-45 (45)
22 TIGR01659 sex-lethal sex-letha 99.5 1.8E-14 3.9E-19 149.4 9.2 83 287-378 192-274 (346)
23 KOG0144 RNA-binding protein CU 99.5 1.4E-14 3.1E-19 149.6 8.0 141 288-480 34-177 (510)
24 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1.3E-13 2.9E-18 148.5 15.7 139 289-477 3-143 (481)
25 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 7E-14 1.5E-18 150.7 12.4 162 287-477 274-445 (481)
26 PF00076 RRM_1: RNA recognitio 99.5 4.2E-14 9.2E-19 110.6 7.5 67 291-367 1-67 (70)
27 KOG0145 RNA-binding protein EL 99.5 1.5E-13 3.3E-18 134.6 9.8 135 287-477 40-178 (360)
28 KOG0124 Polypyrimidine tract-b 99.4 3.3E-13 7E-18 137.2 9.3 147 287-478 112-262 (544)
29 TIGR01642 U2AF_lg U2 snRNP aux 99.4 2E-13 4.4E-18 146.7 8.2 174 286-485 173-362 (509)
30 KOG0122 Translation initiation 99.4 5.6E-13 1.2E-17 129.7 9.3 82 287-379 188-269 (270)
31 KOG0126 Predicted RNA-binding 99.4 2.8E-14 6E-19 133.5 -0.2 84 281-375 27-111 (219)
32 KOG0149 Predicted RNA-binding 99.4 6.6E-13 1.4E-17 128.7 7.3 80 287-378 11-90 (247)
33 PF14259 RRM_6: RNA recognitio 99.4 1.4E-12 3E-17 103.3 7.6 67 291-367 1-67 (70)
34 KOG0121 Nuclear cap-binding pr 99.4 7.8E-13 1.7E-17 117.8 6.6 80 286-376 34-113 (153)
35 KOG0145 RNA-binding protein EL 99.4 4.9E-12 1.1E-16 124.1 11.7 83 287-378 126-208 (360)
36 PLN03120 nucleic acid binding 99.3 3.2E-12 7E-17 126.9 9.6 75 288-377 4-78 (260)
37 TIGR01648 hnRNP-R-Q heterogene 99.3 8.1E-12 1.8E-16 136.9 13.5 138 287-477 137-278 (578)
38 KOG4205 RNA-binding protein mu 99.3 1.8E-12 3.9E-17 132.3 7.1 136 199-379 41-176 (311)
39 COG0724 RNA-binding proteins ( 99.3 7E-12 1.5E-16 118.6 9.6 79 288-377 115-193 (306)
40 KOG0131 Splicing factor 3b, su 99.3 8.1E-12 1.8E-16 117.2 9.3 136 286-477 7-148 (203)
41 KOG0113 U1 small nuclear ribon 99.3 8.7E-12 1.9E-16 124.3 9.8 83 286-377 99-181 (335)
42 smart00362 RRM_2 RNA recogniti 99.3 1.9E-11 4.2E-16 93.8 7.7 71 290-373 1-71 (72)
43 PLN03213 repressor of silencin 99.3 1.4E-11 2.9E-16 129.4 8.9 77 287-378 9-87 (759)
44 KOG0107 Alternative splicing f 99.2 1.6E-11 3.5E-16 114.5 7.8 77 287-379 9-85 (195)
45 PLN03121 nucleic acid binding 99.2 3.2E-11 6.8E-16 118.4 9.6 75 288-377 5-79 (243)
46 smart00360 RRM RNA recognition 99.2 4.1E-11 8.9E-16 91.5 7.6 70 293-373 1-70 (71)
47 KOG0108 mRNA cleavage and poly 99.2 5.9E-11 1.3E-15 126.0 8.4 79 289-378 19-97 (435)
48 KOG0144 RNA-binding protein CU 99.2 1.7E-11 3.7E-16 127.1 4.2 84 287-379 123-206 (510)
49 KOG0123 Polyadenylate-binding 99.1 2.2E-10 4.8E-15 120.0 11.9 139 288-477 76-217 (369)
50 KOG0148 Apoptosis-promoting RN 99.1 9.4E-11 2E-15 115.8 8.1 75 286-377 162-236 (321)
51 KOG0109 RNA-binding protein LA 99.1 1.5E-10 3.4E-15 115.2 8.8 122 289-480 3-124 (346)
52 cd00590 RRM RRM (RNA recogniti 99.1 3.2E-10 7E-15 87.4 8.7 73 290-374 1-73 (74)
53 KOG0114 Predicted RNA-binding 99.1 2.3E-10 5.1E-15 98.8 8.4 78 286-377 16-93 (124)
54 KOG0125 Ataxin 2-binding prote 99.1 1.6E-10 3.4E-15 116.7 8.5 79 287-378 95-173 (376)
55 KOG4205 RNA-binding protein mu 99.1 2.3E-10 4.9E-15 117.0 9.7 139 287-476 5-147 (311)
56 KOG0110 RNA-binding protein (R 99.1 4.7E-10 1E-14 122.4 11.0 143 287-477 514-664 (725)
57 KOG4207 Predicted splicing fac 99.1 1.5E-10 3.2E-15 110.7 6.3 85 285-380 10-94 (256)
58 KOG0130 RNA-binding protein RB 99.1 2.1E-10 4.5E-15 103.3 6.6 79 290-379 74-152 (170)
59 KOG0111 Cyclophilin-type pepti 99.1 1E-10 2.3E-15 112.6 4.4 82 287-379 9-90 (298)
60 KOG0123 Polyadenylate-binding 99.0 1E-09 2.2E-14 115.0 11.3 121 289-477 2-124 (369)
61 KOG1995 Conserved Zn-finger pr 99.0 3.3E-10 7.1E-15 115.7 5.4 92 286-380 64-155 (351)
62 KOG4206 Spliceosomal protein s 99.0 2.3E-09 4.9E-14 103.8 10.5 82 285-380 6-91 (221)
63 KOG1789 Endocytosis protein RM 98.9 2E-10 4.3E-15 128.6 0.4 76 5-81 938-1013(2235)
64 KOG0146 RNA-binding protein ET 98.9 1.3E-09 2.7E-14 107.7 5.1 81 286-377 283-363 (371)
65 smart00361 RRM_1 RNA recogniti 98.9 4.7E-09 1E-13 84.3 7.2 57 302-367 2-65 (70)
66 KOG0105 Alternative splicing f 98.9 3.9E-09 8.5E-14 99.6 6.4 79 286-378 4-82 (241)
67 KOG0131 Splicing factor 3b, su 98.8 5.1E-09 1.1E-13 98.6 6.6 85 286-380 94-178 (203)
68 KOG0117 Heterogeneous nuclear 98.8 1E-08 2.2E-13 107.3 6.6 73 290-381 261-333 (506)
69 PF13893 RRM_5: RNA recognitio 98.7 3.5E-08 7.5E-13 75.4 7.1 56 305-376 1-56 (56)
70 KOG4208 Nucleolar RNA-binding 98.7 3.1E-08 6.8E-13 94.9 6.7 80 287-375 48-128 (214)
71 KOG4212 RNA-binding protein hn 98.6 5.6E-08 1.2E-12 101.4 7.6 80 286-377 42-122 (608)
72 KOG0147 Transcriptional coacti 98.6 3.6E-08 7.8E-13 105.4 5.4 147 286-477 177-329 (549)
73 KOG0146 RNA-binding protein ET 98.5 4.2E-07 9E-12 90.2 8.7 84 287-379 18-101 (371)
74 KOG0109 RNA-binding protein LA 98.5 1.7E-07 3.7E-12 93.8 5.6 75 286-379 76-150 (346)
75 KOG0533 RRM motif-containing p 98.5 3.3E-07 7.2E-12 90.8 7.6 77 287-375 82-158 (243)
76 KOG4209 Splicing factor RNPS1, 98.4 4.2E-07 9.2E-12 89.7 6.6 78 288-377 101-178 (231)
77 KOG0415 Predicted peptidyl pro 98.4 4.3E-07 9.3E-12 93.0 6.4 79 288-377 239-317 (479)
78 KOG4212 RNA-binding protein hn 98.3 6.2E-07 1.3E-11 93.8 6.3 74 286-375 534-607 (608)
79 KOG4211 Splicing factor hnRNP- 98.3 6.1E-06 1.3E-10 87.7 11.9 136 290-477 12-154 (510)
80 KOG0226 RNA-binding proteins [ 98.3 1.2E-06 2.5E-11 86.5 6.1 73 287-368 189-261 (290)
81 KOG0110 RNA-binding protein (R 98.2 7.1E-07 1.5E-11 98.0 4.0 80 288-378 613-692 (725)
82 KOG0132 RNA polymerase II C-te 98.2 3.6E-06 7.8E-11 93.3 8.4 74 287-377 420-493 (894)
83 KOG4661 Hsp27-ERE-TATA-binding 98.1 2.9E-06 6.2E-11 91.2 6.0 84 287-381 404-487 (940)
84 KOG1457 RNA binding protein (c 98.1 9E-06 2E-10 79.1 8.8 86 288-381 34-120 (284)
85 KOG0116 RasGAP SH3 binding pro 98.1 5.6E-06 1.2E-10 88.1 7.3 80 287-378 287-366 (419)
86 KOG0106 Alternative splicing f 98.0 8.5E-06 1.8E-10 79.5 6.3 141 289-477 2-142 (216)
87 KOG0153 Predicted RNA-binding 97.9 1.4E-05 3.1E-10 81.8 6.3 75 287-378 227-302 (377)
88 KOG4454 RNA binding protein (R 97.9 3.6E-06 7.8E-11 81.6 1.7 71 287-368 8-78 (267)
89 cd00072 GYF GYF domain: contai 97.9 1.2E-05 2.5E-10 62.9 3.7 50 24-73 2-52 (57)
90 PF02213 GYF: GYF domain; Int 97.9 1.3E-05 2.8E-10 62.4 3.4 52 25-76 2-54 (57)
91 PF04059 RRM_2: RNA recognitio 97.6 0.00038 8.2E-09 60.1 8.9 84 289-380 2-88 (97)
92 KOG1190 Polypyrimidine tract-b 97.6 0.0004 8.6E-09 72.8 10.0 143 288-463 297-447 (492)
93 KOG0128 RNA-binding protein SA 97.5 9E-06 2E-10 91.0 -2.8 117 287-477 666-786 (881)
94 KOG0151 Predicted splicing reg 97.5 0.00013 2.9E-09 80.5 5.9 79 287-376 173-254 (877)
95 KOG4660 Protein Mei2, essentia 97.5 9.7E-05 2.1E-09 79.8 4.0 68 287-368 74-141 (549)
96 KOG4210 Nuclear localization s 97.4 0.0001 2.2E-09 75.1 3.2 82 288-381 184-266 (285)
97 smart00444 GYF Contains conser 97.4 0.00027 5.9E-09 55.0 4.8 51 25-75 2-52 (56)
98 KOG0129 Predicted RNA-binding 97.4 0.0014 3E-08 70.6 11.4 152 286-477 257-422 (520)
99 KOG1996 mRNA splicing factor [ 97.2 0.00021 4.5E-09 72.1 2.4 41 419-465 281-321 (378)
100 PF11608 Limkain-b1: Limkain b 97.1 0.0014 3.1E-08 55.2 6.6 68 289-376 3-74 (90)
101 smart00361 RRM_1 RNA recogniti 97.0 0.00074 1.6E-08 54.1 4.0 38 441-478 3-47 (70)
102 KOG4849 mRNA cleavage factor I 97.0 0.00073 1.6E-08 69.6 4.2 72 288-368 80-153 (498)
103 KOG2314 Translation initiation 96.7 0.004 8.7E-08 67.7 7.5 73 287-368 57-135 (698)
104 KOG4211 Splicing factor hnRNP- 96.6 0.0048 1E-07 66.2 6.9 77 288-376 103-179 (510)
105 KOG3152 TBP-binding protein, a 96.5 0.0021 4.6E-08 63.9 3.8 71 289-368 75-157 (278)
106 KOG4206 Spliceosomal protein s 96.5 0.013 2.9E-07 57.4 9.0 76 286-376 144-219 (221)
107 KOG4307 RNA binding protein RB 96.4 0.011 2.3E-07 65.8 8.1 73 289-370 868-940 (944)
108 COG5175 MOT2 Transcriptional r 96.3 0.0068 1.5E-07 62.5 6.0 79 287-376 113-200 (480)
109 PF05172 Nup35_RRM: Nup53/35/4 96.1 0.026 5.5E-07 49.1 7.7 85 288-377 6-90 (100)
110 KOG1457 RNA binding protein (c 96.0 0.0055 1.2E-07 60.1 3.6 66 287-364 209-274 (284)
111 PF08777 RRM_3: RNA binding mo 96.0 0.013 2.7E-07 51.3 5.3 59 289-361 2-60 (105)
112 KOG1190 Polypyrimidine tract-b 96.0 0.011 2.5E-07 62.2 5.7 76 289-378 151-227 (492)
113 KOG1548 Transcription elongati 95.9 0.018 4E-07 59.6 6.7 75 286-375 263-348 (382)
114 KOG0106 Alternative splicing f 95.8 0.0067 1.5E-07 59.5 2.9 69 286-373 97-165 (216)
115 KOG1855 Predicted RNA-binding 95.8 0.011 2.4E-07 62.6 4.8 69 287-363 230-311 (484)
116 KOG0129 Predicted RNA-binding 95.7 0.025 5.5E-07 61.2 7.3 64 285-356 367-431 (520)
117 KOG1365 RNA-binding protein Fu 95.7 0.03 6.4E-07 58.8 7.3 68 290-363 163-230 (508)
118 PF14605 Nup35_RRM_2: Nup53/35 95.6 0.021 4.5E-07 43.9 4.5 52 289-355 2-53 (53)
119 PF13893 RRM_5: RNA recognitio 95.6 0.014 3.1E-07 44.2 3.5 30 447-477 1-30 (56)
120 PLN03120 nucleic acid binding 95.5 0.019 4.1E-07 57.9 5.0 48 419-477 4-52 (260)
121 KOG1456 Heterogeneous nuclear 95.5 0.046 9.9E-07 57.3 7.9 78 287-378 286-364 (494)
122 KOG0105 Alternative splicing f 95.4 0.05 1.1E-06 52.3 7.2 73 287-374 114-187 (241)
123 PF15519 RBM39linker: linker b 95.3 0.009 1.9E-07 49.1 1.8 22 417-439 52-73 (73)
124 PF00076 RRM_1: RNA recognitio 95.3 0.026 5.6E-07 43.5 4.3 45 422-477 1-48 (70)
125 PLN03134 glycine-rich RNA-bind 95.1 0.04 8.6E-07 50.7 5.5 48 419-477 34-85 (144)
126 KOG0128 RNA-binding protein SA 95.1 0.011 2.3E-07 67.2 1.9 68 288-364 736-803 (881)
127 KOG0113 U1 small nuclear ribon 94.9 0.076 1.6E-06 54.2 7.1 68 400-478 80-153 (335)
128 KOG1456 Heterogeneous nuclear 94.7 0.1 2.3E-06 54.7 7.7 79 287-379 119-199 (494)
129 KOG4210 Nuclear localization s 94.6 0.028 6E-07 57.5 3.3 146 287-478 87-237 (285)
130 KOG0121 Nuclear cap-binding pr 94.1 0.072 1.6E-06 48.5 4.4 50 418-478 35-88 (153)
131 PLN03121 nucleic acid binding 94.0 0.096 2.1E-06 52.3 5.5 49 419-478 5-54 (243)
132 KOG0115 RNA-binding protein p5 93.9 0.061 1.3E-06 53.8 4.1 67 288-363 31-97 (275)
133 KOG0107 Alternative splicing f 93.9 0.062 1.3E-06 51.2 3.9 47 419-477 10-56 (195)
134 PF14259 RRM_6: RNA recognitio 93.9 0.14 2.9E-06 40.1 5.3 34 444-477 12-48 (70)
135 KOG0112 Large RNA-binding prot 93.5 0.086 1.9E-06 60.4 4.8 78 286-378 453-530 (975)
136 PF03467 Smg4_UPF3: Smg-4/UPF3 93.3 0.11 2.4E-06 49.4 4.6 88 287-379 6-98 (176)
137 KOG0112 Large RNA-binding prot 93.3 0.038 8.2E-07 63.2 1.6 71 287-366 371-441 (975)
138 KOG2202 U2 snRNP splicing fact 93.2 0.0098 2.1E-07 59.3 -2.9 62 418-479 42-121 (260)
139 smart00362 RRM_2 RNA recogniti 92.7 0.22 4.8E-06 37.3 4.6 46 422-478 2-49 (72)
140 smart00360 RRM RNA recognition 92.5 0.17 3.7E-06 37.7 3.9 35 444-478 10-48 (71)
141 PLN03213 repressor of silencin 92.4 0.19 4.1E-06 54.5 5.2 49 419-478 10-58 (759)
142 KOG2068 MOT2 transcription fac 92.1 0.077 1.7E-06 54.9 1.8 72 287-368 76-154 (327)
143 KOG0114 Predicted RNA-binding 92.0 0.31 6.8E-06 42.9 5.1 49 418-477 17-66 (124)
144 KOG1365 RNA-binding protein Fu 91.6 0.23 4.9E-06 52.4 4.5 81 288-377 280-360 (508)
145 KOG4307 RNA binding protein RB 91.1 0.27 6E-06 55.2 4.8 78 287-375 433-510 (944)
146 PF08952 DUF1866: Domain of un 91.0 0.51 1.1E-05 43.8 5.8 51 304-374 52-102 (146)
147 KOG0122 Translation initiation 89.9 0.45 9.7E-06 47.6 4.7 50 419-479 189-242 (270)
148 KOG1996 mRNA splicing factor [ 89.7 0.79 1.7E-05 47.0 6.4 65 302-380 300-365 (378)
149 KOG0120 Splicing factor U2AF, 89.4 0.71 1.5E-05 50.7 6.2 55 305-368 426-483 (500)
150 KOG4676 Splicing factor, argin 89.2 0.47 1E-05 50.2 4.4 68 290-367 9-79 (479)
151 PF10309 DUF2414: Protein of u 88.4 2 4.4E-05 34.3 6.6 54 288-358 5-62 (62)
152 KOG2416 Acinus (induces apopto 88.2 0.71 1.5E-05 51.2 5.1 77 287-377 443-520 (718)
153 KOG2202 U2 snRNP splicing fact 88.1 0.31 6.7E-06 48.9 2.2 57 303-369 83-140 (260)
154 KOG0125 Ataxin 2-binding prote 87.3 0.94 2E-05 47.1 5.1 49 418-478 95-146 (376)
155 KOG4207 Predicted splicing fac 87.1 0.54 1.2E-05 46.1 3.1 34 444-477 27-64 (256)
156 cd00590 RRM RRM (RNA recogniti 86.6 0.98 2.1E-05 33.9 3.8 36 444-479 13-51 (74)
157 KOG2253 U1 snRNP complex, subu 85.7 0.63 1.4E-05 52.1 3.2 69 287-373 39-107 (668)
158 COG0724 RNA-binding proteins ( 85.6 1.3 2.8E-05 41.6 4.9 48 419-477 115-166 (306)
159 KOG1862 GYF domain containing 85.4 0.9 2E-05 51.8 4.4 62 21-82 201-265 (673)
160 KOG0126 Predicted RNA-binding 84.3 1.2 2.5E-05 43.0 3.8 58 416-484 32-101 (219)
161 PF08675 RNA_bind: RNA binding 83.8 2.7 5.8E-05 35.7 5.3 55 290-360 10-64 (87)
162 KOG4285 Mitotic phosphoprotein 80.7 5 0.00011 41.5 7.0 72 288-377 197-268 (350)
163 KOG0149 Predicted RNA-binding 77.3 2.7 5.9E-05 41.9 3.8 37 443-479 25-65 (247)
164 KOG2193 IGF-II mRNA-binding pr 76.9 2.9 6.4E-05 44.9 4.2 69 289-375 2-72 (584)
165 KOG0153 Predicted RNA-binding 73.6 6.8 0.00015 41.2 5.7 48 418-478 227-274 (377)
166 PF08777 RRM_3: RNA binding mo 73.5 4.3 9.4E-05 35.4 3.8 34 443-478 14-47 (105)
167 PF07576 BRAP2: BRCA1-associat 69.6 31 0.00067 30.5 8.3 68 288-365 12-81 (110)
168 KOG0108 mRNA cleavage and poly 69.2 5 0.00011 43.6 3.9 47 420-477 19-69 (435)
169 KOG4660 Protein Mei2, essentia 66.6 6.1 0.00013 43.7 3.8 51 416-478 72-122 (549)
170 KOG4574 RNA-binding protein (c 62.7 5.2 0.00011 46.3 2.5 72 290-377 300-372 (1007)
171 KOG0132 RNA polymerase II C-te 60.8 12 0.00027 43.0 5.0 45 419-476 421-465 (894)
172 KOG0804 Cytoplasmic Zn-finger 57.7 28 0.00061 37.9 6.8 82 288-379 74-159 (493)
173 PF03880 DbpA: DbpA RNA bindin 57.5 32 0.0007 27.8 5.7 71 290-376 2-74 (74)
174 PF04847 Calcipressin: Calcipr 55.6 33 0.00071 33.1 6.3 59 302-377 9-69 (184)
175 KOG0533 RRM motif-containing p 53.0 17 0.00037 36.6 4.0 49 419-478 83-134 (243)
176 KOG4676 Splicing factor, argin 52.2 3.5 7.7E-05 43.9 -0.9 64 288-364 151-214 (479)
177 KOG4454 RNA binding protein (R 44.7 6.2 0.00014 39.2 -0.5 66 290-364 82-151 (267)
178 PF15023 DUF4523: Protein of u 42.7 75 0.0016 29.9 6.2 60 287-361 85-148 (166)
179 KOG2135 Proteins containing th 42.6 16 0.00034 40.0 2.1 71 287-373 371-442 (526)
180 PF11767 SET_assoc: Histone ly 42.4 58 0.0013 26.3 4.8 50 298-364 10-59 (66)
181 PF14605 Nup35_RRM_2: Nup53/35 39.0 45 0.00098 25.4 3.6 35 442-478 12-46 (53)
182 KOG4209 Splicing factor RNPS1, 35.8 28 0.0006 34.8 2.5 48 419-477 101-152 (231)
183 KOG4410 5-formyltetrahydrofola 34.8 70 0.0015 33.1 5.2 52 284-348 326-377 (396)
184 KOG2295 C2H2 Zn-finger protein 34.4 6 0.00013 43.9 -2.6 74 283-364 226-299 (648)
185 PF03468 XS: XS domain; Inter 32.3 52 0.0011 29.3 3.4 57 290-357 10-76 (116)
186 PF03468 XS: XS domain; Inter 31.9 41 0.00088 30.0 2.7 57 419-477 8-65 (116)
187 PF15513 DUF4651: Domain of un 30.4 93 0.002 25.0 4.2 24 441-464 5-28 (62)
188 KOG0116 RasGAP SH3 binding pro 27.3 43 0.00092 36.4 2.4 47 420-477 289-339 (419)
189 PF01473 CW_binding_1: Putativ 27.0 44 0.00095 20.0 1.4 11 24-34 8-18 (19)
190 KOG2318 Uncharacterized conser 26.9 1.2E+02 0.0026 34.3 5.6 70 287-364 173-294 (650)
191 PF08952 DUF1866: Domain of un 26.2 1.4E+02 0.0031 27.9 5.2 53 419-477 27-79 (146)
192 KOG0130 RNA-binding protein RB 25.8 77 0.0017 29.6 3.4 46 421-477 74-123 (170)
193 KOG2591 c-Mpl binding protein, 25.1 1.6E+02 0.0034 33.3 6.1 57 288-359 175-233 (684)
194 PF05189 RTC_insert: RNA 3'-te 20.7 1.3E+02 0.0029 25.6 3.8 51 290-347 12-66 (103)
No 1
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=100.00 E-value=3.6e-56 Score=444.37 Aligned_cols=267 Identities=39% Similarity=0.566 Sum_probs=214.9
Q ss_pred eEEeecccccccccCC---CccccCCCCcccccccccccccCCCCCCccccccccccccccchhhhcccccchhhhccCC
Q 011382 185 RYKWDRGLRAWVPQED---TSSQNDGYGIEEMTFLKEEEVFPTVNVTDDLANDEVGKEKLNSTEEKVNSADNVVEEKHNG 261 (487)
Q Consensus 185 ~y~wD~~~k~w~p~d~---~~~~~~~yg~~~~t~~~~eev~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~ 261 (487)
.|.||.++++|||+.+ .+.||++|||++.|+....+. ..+...++++. .+..+..
T Consensus 50 dy~wd~~k~~W~pki~~df~a~yq~nyg~~~d~s~~~~e~---------~e~~~a~~~~e-------------~e~~k~~ 107 (382)
T KOG1548|consen 50 DYIWDDEKKAWVPKIPEDFIAEYQANYGFEDDTSADATEL---------EEDGHAKKKKE-------------DELLKNP 107 (382)
T ss_pred cceeehhhccccCCCchhHHHhhhcccCccccccccchhh---------hhhhhhhhccc-------------chhhhcc
Confidence 3999999999999944 467999999976554433321 00001111111 1111223
Q ss_pred CCCCCchhhhhcccCCCCCCCccCCCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceE
Q 011382 262 KRKQPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDA 341 (487)
Q Consensus 262 kr~~~~k~~~k~e~~~~~~~~~~~~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~A 341 (487)
+|+.+.....++.++.++-.|+....|++|||+|||.+||.+++.++|++||.|++||+||+|+|+||++. .|+.||+|
T Consensus 108 ~r~~~~~~~~kk~~~e~~~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDa 186 (382)
T KOG1548|consen 108 KRKYKVGKGEKKQKEEGEWFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDA 186 (382)
T ss_pred cccccCccccccccCCCcccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCce
Confidence 33322222333333333334445679999999999999999999999999999999999999999999994 69999999
Q ss_pred EEEeCCHHHHHHHHHhcCCcccCCCCceeEEEEeccccccchhhhhhhhh--HHHHHHHHHHHHHhccCCCCC--CCCCC
Q 011382 342 LVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVD--SKKKKKLKKVEEKMLGWGGRD--DAKLT 417 (487)
Q Consensus 342 fV~F~~~esa~~Ai~~Ldg~~~~~G~~i~I~V~~A~~~~kg~~~~~kk~~--~~kkkklqkl~~kl~~w~~~~--~~~~~ 417 (487)
+|+|.+.+||++||++||+..|+ |+ .|+|++|+|+++|.++++++.+ .+.++|++++++++++|.+.. +.+.+
T Consensus 187 Lc~y~K~ESVeLA~~ilDe~~~r-g~--~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r 263 (382)
T KOG1548|consen 187 LCCYIKRESVELAIKILDEDELR-GK--KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKAR 263 (382)
T ss_pred EEEeecccHHHHHHHHhCccccc-Cc--EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCcccccccc
Confidence 99999999999999999999999 75 6899999999999999887754 335788889999999999875 34456
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
..++|||+|||+|++|+++|+++.+|++||+++|+|||.|.+|+||++||+|||.|.|..
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n 323 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRN 323 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCC
Confidence 789999999999999999999999999999999999999999999999999999999975
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.91 E-value=2.8e-24 Score=234.57 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||.++++++|+++|++||.|. +|+|.+|+.+|++||||||.|.+.++|..||..|||+.|+ |
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~--------svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg-G 273 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIV--------KCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG-G 273 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCee--------EEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC-C
Confidence 456899999999999999999999999999 9999999989999999999999999999999999999998 7
Q ss_pred CceeEEEEecc
Q 011382 367 GKIPMSVTQAK 377 (487)
Q Consensus 367 ~~i~I~V~~A~ 377 (487)
+ .|+|.++.
T Consensus 274 r--~LrV~kAi 282 (612)
T TIGR01645 274 Q--YLRVGKCV 282 (612)
T ss_pred e--EEEEEecC
Confidence 5 46776654
No 3
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=7.1e-24 Score=224.59 Aligned_cols=179 Identities=22% Similarity=0.266 Sum_probs=132.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||..+|+++|+++|++||.|. .|.|++|+.+|+++|||||+|.+.++|..|+..|||..|. |
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~--------~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~-g 255 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIE--------DVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA-G 255 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeE--------EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC-C
Confidence 367999999999999999999999999999 9999999889999999999999999999999999999998 7
Q ss_pred CceeEEEEeccccccchhhhhhhhh--H-------HHHHHHHHHHHHhccCC----------------------------
Q 011382 367 GKIPMSVTQAKFEQKGERFIAKQVD--S-------KKKKKLKKVEEKMLGWG---------------------------- 409 (487)
Q Consensus 367 ~~i~I~V~~A~~~~kg~~~~~kk~~--~-------~kkkklqkl~~kl~~w~---------------------------- 409 (487)
+ +|+|..|.-............. . ........+.+++..+.
T Consensus 256 ~--~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (457)
T TIGR01622 256 R--PIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDP 333 (457)
T ss_pred E--EEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccc
Confidence 5 5788876521100000000000 0 00000011111211111
Q ss_pred ---------------CC----CCCCCCCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCce
Q 011382 410 ---------------GR----DDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEIN 470 (487)
Q Consensus 410 ---------------~~----~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gv 470 (487)
.. .......++||+|+|||++.+ ..++.|+.+|.+||++||++||.|.+|.|++.+..|+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~-~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~ 412 (457)
T TIGR01622 334 NIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPAT-EEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGK 412 (457)
T ss_pred cccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcc-cccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCcee
Confidence 00 000113468999999999977 4578899999999999999999999999998999999
Q ss_pred EEEEEEe
Q 011382 471 CILIIFL 477 (487)
Q Consensus 471 v~V~f~~ 477 (487)
|||.|..
T Consensus 413 ~fV~F~~ 419 (457)
T TIGR01622 413 IYLKFSS 419 (457)
T ss_pred EEEEECC
Confidence 9999876
No 4
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=1.4e-23 Score=224.96 Aligned_cols=174 Identities=21% Similarity=0.260 Sum_probs=131.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||..+|+++|+++|++||.|. .++|++++.+|.++|||||+|.+.++|..||..|||..|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~- 363 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLK--------AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG- 363 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 3567999999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEeccccccchhhhhhhhhHHHHHHH-HHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHH
Q 011382 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKL-KKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELE 444 (487)
Q Consensus 366 G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkkl-qkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~ 444 (487)
|+ +|.|..|.+..+........ .......+ ..+.+.++.. ...+++||+|.|||++++|.+|.+| .+|.
T Consensus 364 ~~--~l~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~s~v~~l~N~~~~~~l~~d~~~-~~~~ 433 (509)
T TIGR01642 364 DN--KLHVQRACVGANQATIDTSN-GMAPVTLLAKALSQSILQI------GGKPTKVVQLTNLVTGDDLMDDEEY-EEIY 433 (509)
T ss_pred Ce--EEEEEECccCCCCCCccccc-cccccccccccchhhhccc------cCCCceEEEeccCCchhHhcCcchH-HHHH
Confidence 64 57888887543211100000 00000000 0011111111 1235689999999999999876655 8999
Q ss_pred HHHHHHhccCcceEEEEEecCCC-------CceEEEEEEee
Q 011382 445 ADVQEECVKIGPVDSVKVMKLNV-------EINCILIIFLL 478 (487)
Q Consensus 445 EDVreEC~KfG~V~~V~V~~~~p-------~Gvv~V~f~~~ 478 (487)
+||+++|++||.|.+|+|+...+ .|+|||.|...
T Consensus 434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~ 474 (509)
T TIGR01642 434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADV 474 (509)
T ss_pred HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCH
Confidence 99999999999999999975422 48899998763
No 5
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.89 E-value=1.5e-23 Score=220.81 Aligned_cols=180 Identities=23% Similarity=0.301 Sum_probs=130.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
+..+|||+||++++|++.|+.+|..||.|. .|.+.+|.+||++||||||+|.+.++|..|+..|||++|. |
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie--------~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelA-G 347 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIE--------NVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELA-G 347 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccce--------eeeeccccccccccCcceEEEecHHHHHHHHHHhccceec-C
Confidence 334499999999999999999999999999 9999999889999999999999999999999999999999 8
Q ss_pred CceeEEEEecc--ccccch-------------hhhhhhh-hHHHHHHHH-------------H--HHHHh---ccCCC--
Q 011382 367 GKIPMSVTQAK--FEQKGE-------------RFIAKQV-DSKKKKKLK-------------K--VEEKM---LGWGG-- 410 (487)
Q Consensus 367 ~~i~I~V~~A~--~~~kg~-------------~~~~kk~-~~~kkkklq-------------k--l~~kl---~~w~~-- 410 (487)
+.| +|.... +..+.. ....... ..+.+.|+. . +..++ +..++
T Consensus 348 r~i--kV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~ 425 (549)
T KOG0147|consen 348 RLI--KVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVV 425 (549)
T ss_pred ceE--EEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCc
Confidence 754 454333 222100 0000000 111111110 0 00000 01111
Q ss_pred --CCCCCC-------CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEeec
Q 011382 411 --RDDAKL-------TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFLLE 479 (487)
Q Consensus 411 --~~~~~~-------~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~~~ 479 (487)
....+. .++.|+.|+|||+|.+ ++.|.|..||++||.|||+|||.|.+|.| |.+..|.|||+|.-.+
T Consensus 426 ~~~~~~p~~~~p~~~i~t~C~lL~nMFdpst-ete~n~d~eI~edV~Eec~k~g~v~hi~v-d~ns~g~VYvrc~s~~ 501 (549)
T KOG0147|consen 426 RVRSVDPADASPAFDIPTQCLLLSNMFDPST-ETEPNWDQEIREDVIEECGKHGKVCHIFV-DKNSAGCVYVRCPSAE 501 (549)
T ss_pred CccccCccccccccCCccHHHHHhhcCCccc-ccCcchhhHHHHHHHHHHHhcCCeeEEEE-ccCCCceEEEecCcHH
Confidence 001111 4578999999999998 67899999999999999999999999999 5555699999986443
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.79 E-value=1.1e-18 Score=180.59 Aligned_cols=136 Identities=20% Similarity=0.261 Sum_probs=112.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...|+|||+|||+++|+++|+++|++||.|. .|+|++|+.+|++||||||+|.++++|..||..|||..|.
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~--------~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~- 175 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPIN--------TCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR- 175 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC-
Confidence 3568999999999999999999999999999 9999999999999999999999999999999999999998
Q ss_pred CCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHH
Q 011382 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (487)
Q Consensus 366 G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~E 445 (487)
++ +|+|..+..... + ....+|+|.|| +..+ .++
T Consensus 176 gr--~i~V~~a~p~~~-------------------------------~---~~~~~lfV~nL--p~~v---------tee 208 (346)
T TIGR01659 176 NK--RLKVSYARPGGE-------------------------------S---IKDTNLYVTNL--PRTI---------TDD 208 (346)
T ss_pred Cc--eeeeeccccccc-------------------------------c---cccceeEEeCC--CCcc---------cHH
Confidence 65 567776542100 0 01247999998 2221 357
Q ss_pred HHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 446 DVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 446 DVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
||++.|++||.|.+|.|... ++.|+++|.|..
T Consensus 209 ~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~ 244 (346)
T TIGR01659 209 QLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNK 244 (346)
T ss_pred HHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECC
Confidence 89999999999999998743 457999999965
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.76 E-value=7.6e-18 Score=172.31 Aligned_cols=134 Identities=19% Similarity=0.249 Sum_probs=111.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.++|||+|||.++|+++|+++|++||.|. .|+|++|+.+|+++|||||+|.+.++|..||..|||..|. |+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~--------~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~-g~ 73 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIE--------SCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQ-NK 73 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEE--------EEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEEC-Ce
Confidence 46899999999999999999999999999 9999999999999999999999999999999999999998 75
Q ss_pred ceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHHH
Q 011382 368 KIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADV 447 (487)
Q Consensus 368 ~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDV 447 (487)
+|+|..+..... ....+.|++.|+-. .+ -+++|
T Consensus 74 --~i~v~~a~~~~~----------------------------------~~~~~~l~v~~l~~--~~---------~~~~l 106 (352)
T TIGR01661 74 --TIKVSYARPSSD----------------------------------SIKGANLYVSGLPK--TM---------TQHEL 106 (352)
T ss_pred --eEEEEeeccccc----------------------------------ccccceEEECCccc--cC---------CHHHH
Confidence 577776642100 01135799999822 21 35789
Q ss_pred HHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 448 QEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 448 reEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
++.|++||.|..+.|... ...|+++|.|..
T Consensus 107 ~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~ 140 (352)
T TIGR01661 107 ESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDK 140 (352)
T ss_pred HHHHhccCCEEEEEEEecCCCCCcCcEEEEEECC
Confidence 999999999999998653 357999999965
No 8
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1.5e-17 Score=172.06 Aligned_cols=177 Identities=22% Similarity=0.352 Sum_probs=124.7
Q ss_pred CCCCCccC--CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHH
Q 011382 278 PPDSWFEL--KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALAT 355 (487)
Q Consensus 278 ~~~~~~~~--~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai 355 (487)
||+.|-.. ...|-|||+.||.|+.|++|.-+|.+.|.|- .++|++|+.+|.+||||||+|.+.+.|+.||
T Consensus 71 PpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~--------elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Ai 142 (506)
T KOG0117|consen 71 PPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIY--------ELRLMMDPFSGDNRGYAFVTFCTKEEAQEAI 142 (506)
T ss_pred CCCcccCCCCCCCceEEecCCCccccchhhHHHHHhcccee--------eEEEeecccCCCCcceEEEEeecHHHHHHHH
Confidence 33345433 3688999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HhcCCcccCCCCceeEEEEecccccc--------chhhhh---hh--------------hhHHH-----------HHHHH
Q 011382 356 QLLDGTPFRPDGKIPMSVTQAKFEQK--------GERFIA---KQ--------------VDSKK-----------KKKLK 399 (487)
Q Consensus 356 ~~Ldg~~~~~G~~i~I~V~~A~~~~k--------g~~~~~---kk--------------~~~~k-----------kkklq 399 (487)
+.||+++|++|+.|.++|+.++...- ....+- ++ .++.| .+-..
T Consensus 143 k~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa 222 (506)
T KOG0117|consen 143 KELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAA 222 (506)
T ss_pred HHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHH
Confidence 99999999998877777777774321 100000 00 00000 00000
Q ss_pred HHHHHh-------------ccCCCCC----CCCCCCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEE
Q 011382 400 KVEEKM-------------LGWGGRD----DAKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKV 462 (487)
Q Consensus 400 kl~~kl-------------~~w~~~~----~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V 462 (487)
...+|| .+|.+.. ......-++|++||+-. .-.+|-|+++|++||.|++|+.
T Consensus 223 ~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~-----------~tTeE~lk~~F~~~G~veRVkk 291 (506)
T KOG0117|consen 223 MARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLME-----------STTEETLKKLFNEFGKVERVKK 291 (506)
T ss_pred HHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccch-----------hhhHHHHHHHHHhccceEEeec
Confidence 111222 2454321 11122346899999822 2356779999999999999998
Q ss_pred ecCCCCceEEEEEEe
Q 011382 463 MKLNVEINCILIIFL 477 (487)
Q Consensus 463 ~~~~p~Gvv~V~f~~ 477 (487)
.+ -+++|-|+-
T Consensus 292 ~r----DYaFVHf~e 302 (506)
T KOG0117|consen 292 PR----DYAFVHFAE 302 (506)
T ss_pred cc----ceeEEeecc
Confidence 63 388888875
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.72 E-value=4.3e-17 Score=178.48 Aligned_cols=148 Identities=16% Similarity=0.218 Sum_probs=114.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. +|+|++|+.||++||||||+|.++++|..||+.|||..|.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~--------sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~- 175 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIK--------SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG- 175 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEE--------EEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe-
Confidence 3567999999999999999999999999999 9999999999999999999999999999999999999998
Q ss_pred CCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHH
Q 011382 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (487)
Q Consensus 366 G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~E 445 (487)
|+ +|+|.+..-...... ..++... .....+.|++.|+- .++ -.+
T Consensus 176 GR--~IkV~rp~~~p~a~~--------------------~~~~~~~---~~~~~~rLfVgnLp--~~v---------tee 219 (612)
T TIGR01645 176 GR--NIKVGRPSNMPQAQP--------------------IIDMVQE---EAKKFNRIYVASVH--PDL---------SET 219 (612)
T ss_pred cc--eeeeccccccccccc--------------------ccccccc---cccccceEEeecCC--CCC---------CHH
Confidence 76 466764321100000 0000000 01123589999982 221 247
Q ss_pred HHHHHhccCcceEEEEEecC----CCCceEEEEEEee
Q 011382 446 DVQEECVKIGPVDSVKVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 446 DVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~~ 478 (487)
+|++.|++||.|.+|+|... ...|++||.|...
T Consensus 220 dLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~ 256 (612)
T TIGR01645 220 DIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 256 (612)
T ss_pred HHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCH
Confidence 89999999999999999742 3689999999873
No 10
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=7e-17 Score=163.55 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
+...+|||..+++|+++++|+.+|+.||.|. +|+|.+++..+.+||||||+|.+..+-..||..||=+.+.
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~--------~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLG- 278 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIV--------KCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG- 278 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhccee--------eEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcc-
Confidence 3456899999999999999999999999999 9999999888899999999999999999999999999997
Q ss_pred CCceeEEEEec
Q 011382 366 DGKIPMSVTQA 376 (487)
Q Consensus 366 G~~i~I~V~~A 376 (487)
|. -|+|.++
T Consensus 279 GQ--yLRVGk~ 287 (544)
T KOG0124|consen 279 GQ--YLRVGKC 287 (544)
T ss_pred cc--eEecccc
Confidence 54 4666543
No 11
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=8.9e-18 Score=178.81 Aligned_cols=170 Identities=23% Similarity=0.311 Sum_probs=129.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
...+|||+|||..+++.++.++...||.++ ..+|+.|..+|.+|||||++|.++.-.+.||..|||..+. +
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk--------~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg-d 358 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLK--------AFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG-D 358 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccch--------hheeecccccccccceeeeeeeCCcchhhhhcccchhhhc-C
Confidence 567899999999999999999999999999 9999999999999999999999999999999999999996 4
Q ss_pred CceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHH
Q 011382 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (487)
Q Consensus 367 ~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~ED 446 (487)
. +|.|+.|....+.-... ..........+..++.+. ...++.|++|.||++++||.+|.+ +.||.||
T Consensus 359 ~--~lvvq~A~~g~~~~~~~-~~~~~~~~~~i~~~~~q~---------~g~~t~Vl~L~n~Vt~deLkdd~E-yeeIlEd 425 (500)
T KOG0120|consen 359 K--KLVVQRAIVGASNANVN-FNISQSQVPGIPLLMTQM---------AGIPTEVLCLTNVVTPDELKDDEE-YEEILED 425 (500)
T ss_pred c--eeEeehhhccchhcccc-CCccccccccchhhhccc---------CCCcchhhhhhhcCCHHHhcchHH-HHHHHHH
Confidence 3 67888887543211100 000000011111111111 123568999999999999995555 5999999
Q ss_pred HHHHhccCcceEEEEEecC----C---CCceEEEEEEee
Q 011382 447 VQEECVKIGPVDSVKVMKL----N---VEINCILIIFLL 478 (487)
Q Consensus 447 VreEC~KfG~V~~V~V~~~----~---p~Gvv~V~f~~~ 478 (487)
||.||+|||.|.+|.|... + .-|.|||.|...
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ 464 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADT 464 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecCh
Confidence 9999999999999999654 2 247777777653
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.69 E-value=3.3e-16 Score=166.18 Aligned_cols=147 Identities=17% Similarity=0.222 Sum_probs=112.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
+..++|||+|||.++|+++|+++|++||.|. .|+|++|+.+|+++|||||+|.+.++|.+||. |+|..|.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~--------~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~- 156 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVR--------DVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL- 156 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC-
Confidence 3567899999999999999999999999999 99999999999999999999999999999997 8999998
Q ss_pred CCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHH
Q 011382 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (487)
Q Consensus 366 G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~E 445 (487)
|+ +|.|..+...... ..... .... ...+.+++|+|.||- ..+ -++
T Consensus 157 g~--~i~v~~~~~~~~~---------------~~~~~---~~~~----~~~p~~~~l~v~nl~--~~~---------te~ 201 (457)
T TIGR01622 157 GR--PIIVQSSQAEKNR---------------AAKAA---THQP----GDIPNFLKLYVGNLH--FNI---------TEQ 201 (457)
T ss_pred Ce--eeEEeecchhhhh---------------hhhcc---cccC----CCCCCCCEEEEcCCC--CCC---------CHH
Confidence 75 4666654321100 00000 0000 011235799999993 121 357
Q ss_pred HHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 446 DVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 446 DVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
+|++.|++||.|.+|.|... ...|+++|.|..
T Consensus 202 ~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~ 237 (457)
T TIGR01622 202 ELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHD 237 (457)
T ss_pred HHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECC
Confidence 89999999999999998743 346999999987
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.68 E-value=2.3e-16 Score=172.21 Aligned_cols=135 Identities=14% Similarity=0.183 Sum_probs=109.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCc
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~ 368 (487)
.+|||+|||.++|+++|+++|++||.|. .|+|.+|+.|++++|||||+|.++++|..||..||+..|. |+
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~--------~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~-gk- 70 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVL--------SVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLG-GK- 70 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-Ce-
Confidence 3799999999999999999999999999 9999999989999999999999999999999999999998 75
Q ss_pred eeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHHHH
Q 011382 369 IPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQ 448 (487)
Q Consensus 369 i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVr 448 (487)
+|+|..+..... .......+|+|+|+ +.++ ..++|+
T Consensus 71 -~i~i~~s~~~~~--------------------------------~~~~~~~~vfV~nL--p~~~---------~~~~L~ 106 (562)
T TIGR01628 71 -PIRIMWSQRDPS--------------------------------LRRSGVGNIFVKNL--DKSV---------DNKALF 106 (562)
T ss_pred -eEEeeccccccc--------------------------------ccccCCCceEEcCC--CccC---------CHHHHH
Confidence 466665431100 00012347999998 2222 357899
Q ss_pred HHhccCcceEEEEEecC---CCCceEEEEEEe
Q 011382 449 EECVKIGPVDSVKVMKL---NVEINCILIIFL 477 (487)
Q Consensus 449 eEC~KfG~V~~V~V~~~---~p~Gvv~V~f~~ 477 (487)
+.|++||.|.+|.|... ...|++||.|..
T Consensus 107 ~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~ 138 (562)
T TIGR01628 107 DTFSKFGNILSCKVATDENGKSRGYGFVHFEK 138 (562)
T ss_pred HHHHhcCCcceeEeeecCCCCcccEEEEEECC
Confidence 99999999999998643 357999999966
No 14
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.68 E-value=7.2e-16 Score=157.74 Aligned_cols=83 Identities=30% Similarity=0.458 Sum_probs=76.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||..+++++|+++|++||.|. .++++.+..+|.++|||||+|.+.++|..||+.|||..+. |
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~-g 158 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQII--------TSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS-G 158 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEE--------EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC-C
Confidence 456899999999999999999999999999 8999999888999999999999999999999999999998 7
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+..+|.|..+..
T Consensus 159 ~~~~i~v~~a~~ 170 (352)
T TIGR01661 159 CTEPITVKFANN 170 (352)
T ss_pred CceeEEEEECCC
Confidence 666788888763
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.66 E-value=7.5e-16 Score=168.29 Aligned_cols=138 Identities=22% Similarity=0.330 Sum_probs=108.8
Q ss_pred CCCCCccC--CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHH
Q 011382 278 PPDSWFEL--KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALAT 355 (487)
Q Consensus 278 ~~~~~~~~--~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai 355 (487)
||+.|-.. ...++|||+|||.++|+++|+++|++||.|. .|+|++| .+|++||||||+|.+.++|+.||
T Consensus 46 Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~--------~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai 116 (578)
T TIGR01648 46 PPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIY--------ELRLMMD-FSGQNRGYAFVTFCGKEEAKEAV 116 (578)
T ss_pred CCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEE--------EEEEEEC-CCCCccceEEEEeCCHHHHHHHH
Confidence 44455322 3578999999999999999999999999999 9999999 79999999999999999999999
Q ss_pred HhcCCcccCCCCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhcc
Q 011382 356 QLLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRA 435 (487)
Q Consensus 356 ~~Ldg~~~~~G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~ 435 (487)
+.||+..|.+|+ .|.|..+. ..+.|+|+|+-. .
T Consensus 117 ~~lng~~i~~Gr--~l~V~~S~----------------------------------------~~~rLFVgNLP~--~--- 149 (578)
T TIGR01648 117 KLLNNYEIRPGR--LLGVCISV----------------------------------------DNCRLFVGGIPK--N--- 149 (578)
T ss_pred HHcCCCeecCCc--cccccccc----------------------------------------cCceeEeecCCc--c---
Confidence 999999997553 23333211 125799999833 1
Q ss_pred chhhHHHHHHHHHHHhccCcc-eEEEEEecC-----CCCceEEEEEEe
Q 011382 436 DENLRSELEADVQEECVKIGP-VDSVKVMKL-----NVEINCILIIFL 477 (487)
Q Consensus 436 Dp~~~~ei~EDVreEC~KfG~-V~~V~V~~~-----~p~Gvv~V~f~~ 477 (487)
--+++|++++++|+. |.++.|+.. ...|+++|.|..
T Consensus 150 ------~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s 191 (578)
T TIGR01648 150 ------KKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYES 191 (578)
T ss_pred ------hhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCC
Confidence 145788999999874 667766543 357999999875
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2.7e-16 Score=154.40 Aligned_cols=147 Identities=19% Similarity=0.254 Sum_probs=115.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCce
Q 011382 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKI 369 (487)
Q Consensus 290 ~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i 369 (487)
+|||+-|...|+-+.|++.|.+||.|. .+|+++|..|+++||||||.|-+.++|+.||+.|||.-|. +|
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS--------~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG-~R-- 132 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVS--------DAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG-RR-- 132 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccc--------cceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeec-cc--
Confidence 799999999999999999999999999 8999999999999999999999999999999999999996 44
Q ss_pred eEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHHHHH
Q 011382 370 PMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQE 449 (487)
Q Consensus 370 ~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVre 449 (487)
.|+-..|.-+..... . +.. ..++-. . ...+..++|++-|+-. -| .+++||.
T Consensus 133 ~IRTNWATRKp~e~n-------~-~~l---tfdeV~-N------Qssp~NtsVY~G~I~~--~l---------te~~mr~ 183 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMN-------G-KPL---TFDEVY-N------QSSPDNTSVYVGNIAS--GL---------TEDLMRQ 183 (321)
T ss_pred eeeccccccCccccC-------C-CCc---cHHHHh-c------cCCCCCceEEeCCcCc--cc---------cHHHHHH
Confidence 578877774431100 0 000 111111 1 1112346899999844 11 3467899
Q ss_pred HhccCcceEEEEEecCCCCceEEEEEEee
Q 011382 450 ECVKIGPVDSVKVMKLNVEINCILIIFLL 478 (487)
Q Consensus 450 EC~KfG~V~~V~V~~~~p~Gvv~V~f~~~ 478 (487)
.|+.||+|..|+||.. +|+++|+|.+-
T Consensus 184 ~Fs~fG~I~EVRvFk~--qGYaFVrF~tk 210 (321)
T KOG0148|consen 184 TFSPFGPIQEVRVFKD--QGYAFVRFETK 210 (321)
T ss_pred hcccCCcceEEEEecc--cceEEEEecch
Confidence 9999999999999864 89999999863
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.65 E-value=1.7e-15 Score=165.49 Aligned_cols=155 Identities=20% Similarity=0.262 Sum_probs=114.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||.++|+++|+++|++||.|. .++++++ .+|+++|||||.|.+.++|..|++.|||..|..
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~--------~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~ 246 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEIT--------SAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGL 246 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEE--------EEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEecc
Confidence 3567899999999999999999999999999 9999999 589999999999999999999999999999961
Q ss_pred C--CceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHH
Q 011382 366 D--GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSEL 443 (487)
Q Consensus 366 G--~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei 443 (487)
. . ..|.|.++....... ...+++........ .......+|+|+|+-. ++ .
T Consensus 247 ~~~g-~~l~v~~a~~k~er~--------~~~~~~~~~~~~~~--------~~~~~~~~l~V~nl~~--~~---------~ 298 (562)
T TIGR01628 247 AKEG-KKLYVGRAQKRAERE--------AELRRKFEELQQER--------KMKAQGVNLYVKNLDD--TV---------T 298 (562)
T ss_pred cccc-eeeEeecccChhhhH--------HHHHhhHHhhhhhh--------hcccCCCEEEEeCCCC--cc---------C
Confidence 0 1 357777765321110 00111111111100 0112346899999832 11 3
Q ss_pred HHHHHHHhccCcceEEEEEecC---CCCceEEEEEEe
Q 011382 444 EADVQEECVKIGPVDSVKVMKL---NVEINCILIIFL 477 (487)
Q Consensus 444 ~EDVreEC~KfG~V~~V~V~~~---~p~Gvv~V~f~~ 477 (487)
.++|++.|++||.|++|+|+.. ...|+++|.|..
T Consensus 299 ~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~ 335 (562)
T TIGR01628 299 DEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSN 335 (562)
T ss_pred HHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCC
Confidence 5789999999999999999754 357999999976
No 18
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.61 E-value=2.9e-15 Score=137.22 Aligned_cols=81 Identities=23% Similarity=0.388 Sum_probs=75.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+++|||+|||+++|+++|+++|++||.|. .|+|++|+.||++||||||+|.+.++|+.||+.||+..|. |
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~-G 103 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVV--------DAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN-G 103 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeE--------EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC-C
Confidence 467899999999999999999999999999 9999999999999999999999999999999999999998 7
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+ +|+|..+..
T Consensus 104 r--~l~V~~a~~ 113 (144)
T PLN03134 104 R--HIRVNPAND 113 (144)
T ss_pred E--EEEEEeCCc
Confidence 4 578877763
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=5.4e-15 Score=156.19 Aligned_cols=77 Identities=23% Similarity=0.326 Sum_probs=70.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCce
Q 011382 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKI 369 (487)
Q Consensus 290 ~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i 369 (487)
+|.|.|||+.+..++|..+|+.||.+. .|.|.+.+ .|+..|||||.|.....|..||+.|||..|. |+
T Consensus 119 rLIIRNLPf~~k~~dLk~vFs~~G~V~--------Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~-gR-- 186 (678)
T KOG0127|consen 119 RLIIRNLPFKCKKPDLKNVFSNFGKVV--------EIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKID-GR-- 186 (678)
T ss_pred eEEeecCCcccCcHHHHHHHhhcceEE--------EEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceec-Cc--
Confidence 799999999999999999999999999 89999875 5777799999999999999999999999998 76
Q ss_pred eEEEEeccc
Q 011382 370 PMSVTQAKF 378 (487)
Q Consensus 370 ~I~V~~A~~ 378 (487)
+|-|.+|..
T Consensus 187 ~VAVDWAV~ 195 (678)
T KOG0127|consen 187 PVAVDWAVD 195 (678)
T ss_pred eeEEeeecc
Confidence 567777664
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=3.3e-15 Score=157.71 Aligned_cols=157 Identities=22% Similarity=0.244 Sum_probs=113.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCc
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~ 368 (487)
.+|||++||+++|.++|.++||.+|.|. .+.+++++.++.++|||||+|.-.++++.|+..++++.|. |+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik--------~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~-Gr- 75 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIK--------HAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFE-GR- 75 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcc--------eeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccc-ce-
Confidence 5899999999999999999999999999 9999999999999999999999999999999999999998 76
Q ss_pred eeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeecc-CChhhhccchhhHHHHHHHH
Q 011382 369 IPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFM-FTPAEMRADENLRSELEADV 447 (487)
Q Consensus 369 i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNM-f~p~el~~Dp~~~~ei~EDV 447 (487)
.|+|..|.......... +-.++.-.+.+ .++. +..+....+..-|||+|| |... +.||
T Consensus 76 -~l~v~~A~~R~r~e~~~-~~e~~~veK~~---~q~~----~~k~~v~~~k~rLIIRNLPf~~k------------~~dL 134 (678)
T KOG0127|consen 76 -ILNVDPAKKRARSEEVE-KGENKAVEKPI---EQKR----PTKAKVDLPKWRLIIRNLPFKCK------------KPDL 134 (678)
T ss_pred -ecccccccccccchhcc-cccchhhhccc---ccCC----cchhhccCccceEEeecCCcccC------------cHHH
Confidence 47888887543322100 00000000000 0000 000000001246999999 5533 2488
Q ss_pred HHHhccCcceEEEEEecCC---CCceEEEEEE
Q 011382 448 QEECVKIGPVDSVKVMKLN---VEINCILIIF 476 (487)
Q Consensus 448 reEC~KfG~V~~V~V~~~~---p~Gvv~V~f~ 476 (487)
.-.|++||.|..|+|+.+. -.|+++|.|.
T Consensus 135 k~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk 166 (678)
T KOG0127|consen 135 KNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFK 166 (678)
T ss_pred HHHHhhcceEEEEEcccCCCCCccceEEEEEe
Confidence 9999999999999998442 2489999854
No 21
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=99.56 E-value=2.3e-15 Score=111.66 Aligned_cols=45 Identities=40% Similarity=0.872 Sum_probs=42.9
Q ss_pred ceEEEcCCCcccCCCCHHHHHHHHHcCcccCCcceeccCccCcccC
Q 011382 25 GWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQGRSEWQPL 70 (487)
Q Consensus 25 ~Wyy~~~ngq~~GP~s~~eL~~~~~~G~i~~~TlVW~eGm~~W~pl 70 (487)
+|||.. ||+++||||+++|++||.+|.|+++||||++||++|+||
T Consensus 1 ~Wy~~~-~g~~~GP~s~~el~~l~~~g~i~~~tlvw~~g~~~W~pl 45 (45)
T PF14237_consen 1 EWYYAR-NGQQQGPFSLEELRQLISSGEIDPDTLVWKEGMSDWKPL 45 (45)
T ss_pred CEEEeC-CCeEECCcCHHHHHHHHHcCCCCCCCeEeCCChhhceEC
Confidence 499975 999999999999999999999999999999999999997
No 22
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.53 E-value=1.8e-14 Score=149.40 Aligned_cols=83 Identities=31% Similarity=0.442 Sum_probs=77.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||.++|+++|+++|++||.|. .|+|++|+.+|++||||||+|.+.++|..||+.||+..|. |
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~--------~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~-g 262 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIV--------QKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPE-G 262 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEE--------EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccC-C
Confidence 356899999999999999999999999999 9999999889999999999999999999999999999998 6
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+.++|+|..|.-
T Consensus 263 ~~~~l~V~~a~~ 274 (346)
T TIGR01659 263 GSQPLTVRLAEE 274 (346)
T ss_pred CceeEEEEECCc
Confidence 656889988874
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=1.4e-14 Score=149.59 Aligned_cols=141 Identities=21% Similarity=0.300 Sum_probs=112.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
..++||+-||...+|.+|+++|++||.|. .|.|++|+.||.+||+|||.|.+.+.+..||..|++....+|.
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~--------einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVY--------EINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM 105 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCcee--------EEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC
Confidence 34799999999999999999999999999 9999999999999999999999999999999999998887787
Q ss_pred ceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHHH
Q 011382 368 KIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADV 447 (487)
Q Consensus 368 ~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDV 447 (487)
..+|.|..|.-+...- -.+-|| ++.-+ . + .-.+.+|
T Consensus 106 ~~pvqvk~Ad~E~er~----------------~~e~KL-----------------Fvg~l-s-K---------~~te~ev 141 (510)
T KOG0144|consen 106 HHPVQVKYADGERERI----------------VEERKL-----------------FVGML-S-K---------QCTENEV 141 (510)
T ss_pred Ccceeecccchhhhcc----------------ccchhh-----------------hhhhc-c-c---------cccHHHH
Confidence 7789999887432110 001111 11111 0 0 1146799
Q ss_pred HHHhccCcceEEEEEec---CCCCceEEEEEEeecc
Q 011382 448 QEECVKIGPVDSVKVMK---LNVEINCILIIFLLEF 480 (487)
Q Consensus 448 reEC~KfG~V~~V~V~~---~~p~Gvv~V~f~~~~~ 480 (487)
|+-|++||.|+.|.|.+ +-..|.++|.|.+.+|
T Consensus 142 r~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~ 177 (510)
T KOG0144|consen 142 REIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEM 177 (510)
T ss_pred HHHHHhhCccchhhheecccccccceeEEEEehHHH
Confidence 99999999999999974 3468999999988653
No 24
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.52 E-value=1.3e-13 Score=148.51 Aligned_cols=139 Identities=18% Similarity=0.148 Sum_probs=104.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhc--CCcccCCC
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLL--DGTPFRPD 366 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~L--dg~~~~~G 366 (487)
..|||+|||+++|+++|+++|++||.|. .|+|+++ ||||||+|.+.++|..||+.| ++..|. |
T Consensus 3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~--------~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~-g 67 (481)
T TIGR01649 3 PVVHVRNLPQDVVEADLVEALIPFGPVS--------YVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIR-G 67 (481)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEc-C
Confidence 4799999999999999999999999999 9998853 689999999999999999864 788898 6
Q ss_pred CceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHH
Q 011382 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (487)
Q Consensus 367 ~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~ED 446 (487)
+ +|+|..+........ . . .+.+.........|+++|+-.. + -.++
T Consensus 68 ~--~l~v~~s~~~~~~~~-----~----------------~-~~~~~~~~~~~~~v~v~nl~~~--v---------t~~~ 112 (481)
T TIGR01649 68 Q--PAFFNYSTSQEIKRD-----G----------------N-SDFDSAGPNKVLRVIVENPMYP--I---------TLDV 112 (481)
T ss_pred e--EEEEEecCCcccccC-----C----------------C-CcccCCCCCceEEEEEcCCCCC--C---------CHHH
Confidence 5 678887753211000 0 0 0000001112246888998321 1 2468
Q ss_pred HHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 447 VQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 447 VreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
|++.|++||.|.+|.|+.+...|.++|.|..
T Consensus 113 L~~~F~~~G~V~~v~i~~~~~~~~afVef~~ 143 (481)
T TIGR01649 113 LYQIFNPYGKVLRIVTFTKNNVFQALVEFES 143 (481)
T ss_pred HHHHHhccCCEEEEEEEecCCceEEEEEECC
Confidence 9999999999999999887777899999876
No 25
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.51 E-value=7e-14 Score=150.67 Aligned_cols=162 Identities=20% Similarity=0.234 Sum_probs=110.2
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 287 VNTHVYVTGLPD-DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 287 ~nt~VyV~nLP~-diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
.+++|||+|||+ .+|+++|+++|+.||.|. +|+|++++ +|||||+|.+.++|..||..|||..|.
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~--------~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~- 339 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVE--------RVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLF- 339 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeE--------EEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 567999999998 699999999999999999 99999873 799999999999999999999999998
Q ss_pred CCceeEEEEeccccccchhhhhhhhhHHHHHHHHHH-HHHhccCCCC----CCCCCCCCeEEEeeccCChhhhccchhhH
Q 011382 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKV-EEKMLGWGGR----DDAKLTIPATVILRFMFTPAEMRADENLR 440 (487)
Q Consensus 366 G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl-~~kl~~w~~~----~~~~~~~~~~VvLkNMf~p~el~~Dp~~~ 440 (487)
|+ +|+|..++......... ..... .....+.. ..++...... ......++++|+|+|+ |..+
T Consensus 340 g~--~l~v~~s~~~~~~~~~~-~~~~~-~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL--p~~~------- 406 (481)
T TIGR01649 340 GK--PLRVCPSKQQNVQPPRE-GQLDD-GLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI--PLSV------- 406 (481)
T ss_pred Cc--eEEEEEcccccccCCCC-CcCcC-CCcccccccCCccccCCCcccccccccCCCCcEEEEecC--CCCC-------
Confidence 75 57777765431100000 00000 00000000 0000001100 0011235679999999 2222
Q ss_pred HHHHHHHHHHhccCcc--eEEEEEecCC--CCceEEEEEEe
Q 011382 441 SELEADVQEECVKIGP--VDSVKVMKLN--VEINCILIIFL 477 (487)
Q Consensus 441 ~ei~EDVreEC~KfG~--V~~V~V~~~~--p~Gvv~V~f~~ 477 (487)
..++|++.|+.||. |++|+|++.. ..|+++|.|..
T Consensus 407 --tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~ 445 (481)
T TIGR01649 407 --SEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWES 445 (481)
T ss_pred --CHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCC
Confidence 24789999999998 9999997543 46899999987
No 26
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.51 E-value=4.2e-14 Score=110.62 Aligned_cols=67 Identities=36% Similarity=0.552 Sum_probs=64.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 291 VYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 291 VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
|||+|||.++|+++|+++|++||.|. .+++..+ .+|+++|+|||+|.+.++|..|++.|||..|. |+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~--------~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~-~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIE--------SIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKIN-GR 67 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEE--------EEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEET-TE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcc--------ccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEEC-cc
Confidence 79999999999999999999999999 9999998 68999999999999999999999999999998 64
No 27
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.5e-13 Score=134.61 Aligned_cols=135 Identities=19% Similarity=0.281 Sum_probs=110.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..|+|.|.-||..+|.+||+.+|+..|.|. +|||++|+-+|++-|||||-|.++.+|++||..|||..+. .
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiE--------ScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ-~ 110 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIE--------SCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ-N 110 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhccccee--------eeeeeeccccccccccceeeecChHHHHHHHhhhcceeec-c
Confidence 457899999999999999999999999999 9999999999999999999999999999999999999998 4
Q ss_pred CceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHH
Q 011382 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (487)
Q Consensus 367 ~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~ED 446 (487)
..|+|+.|...... + ....+++..+ |.-| .+.+
T Consensus 111 --KTIKVSyARPSs~~----------------------I------------k~aNLYvSGl--PktM---------tqke 143 (360)
T KOG0145|consen 111 --KTIKVSYARPSSDS----------------------I------------KDANLYVSGL--PKTM---------TQKE 143 (360)
T ss_pred --ceEEEEeccCChhh----------------------h------------cccceEEecC--Cccc---------hHHH
Confidence 36899988753210 0 1235666665 3332 4678
Q ss_pred HHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 447 VQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 447 VreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
|..-|+.||.|..-+|.-. -..||++|+|.-
T Consensus 144 lE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDK 178 (360)
T KOG0145|consen 144 LEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDK 178 (360)
T ss_pred HHHHHHHhhhhhhhhhhhhcccceecceeEEEecc
Confidence 8899999999877666433 358999999975
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3.3e-13 Score=137.19 Aligned_cols=147 Identities=19% Similarity=0.260 Sum_probs=109.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..|+||||.|.+.+-|+.|+..|..||.|+ +|.+..|+.||++||||||+|.-++.|.+|++.|||..+. |
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIK--------SInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlG-G 182 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIK--------SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG-G 182 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcc--------eeecccccccccccceEEEEEeCcHHHHHHHHHhcccccc-C
Confidence 568999999999999999999999999999 9999999999999999999999999999999999999997 7
Q ss_pred CceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHH
Q 011382 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (487)
Q Consensus 367 ~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~ED 446 (487)
+ +|+|.+..--...+. -.. .+++....+ ..|++..+ +| ++ .++|
T Consensus 183 R--NiKVgrPsNmpQAQp---------iID---~vqeeAk~f-----------nRiYVaSv-Hp-------DL---Se~D 226 (544)
T KOG0124|consen 183 R--NIKVGRPSNMPQAQP---------IID---MVQEEAKKF-----------NRIYVASV-HP-------DL---SETD 226 (544)
T ss_pred c--cccccCCCCCcccch---------HHH---HHHHHHHhh-----------heEEeeec-CC-------Cc---cHHH
Confidence 6 467764432111111 011 111111111 13444444 22 11 3579
Q ss_pred HHHHhccCcceEEEEEecC----CCCceEEEEEEee
Q 011382 447 VQEECVKIGPVDSVKVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 447 VreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~~ 478 (487)
|+..|+-||+|.+|.+-+. .-.|++||.|+-.
T Consensus 227 iKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~ 262 (544)
T KOG0124|consen 227 IKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 262 (544)
T ss_pred HHHHHHhhcceeeEEeeccCCCCCccceeeEEeccc
Confidence 9999999999999999532 2368899888753
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.43 E-value=2e-13 Score=146.70 Aligned_cols=174 Identities=15% Similarity=0.155 Sum_probs=105.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccC--CCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCccc
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKED--PETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPF 363 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d--~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~ 363 (487)
+..++|||+|||+++|+++|+++|+.|+.+..- ...+.+-..+ ..+..+|||||+|.+.++|..||. |||..|
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~----~~~~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSV----NINKEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEE----EECCCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 356789999999999999999999986332200 0001111122 235679999999999999999995 999999
Q ss_pred CCCCceeEEEEeccccc-cchhhh-hhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHH
Q 011382 364 RPDGKIPMSVTQAKFEQ-KGERFI-AKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRS 441 (487)
Q Consensus 364 ~~G~~i~I~V~~A~~~~-kg~~~~-~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ 441 (487)
. |. .|+|.+..--. ...... ........ .... ........ ......+.|+|.|| |..+
T Consensus 248 ~-g~--~l~v~r~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~----~~~~~~~~l~v~nl--p~~~-------- 307 (509)
T TIGR01642 248 S-NV--FLKIRRPHDYIPVPQITPEVSQKNPDD--NAKN-VEKLVNST----TVLDSKDRIYIGNL--PLYL-------- 307 (509)
T ss_pred e-Cc--eeEecCccccCCccccCCCCCCCCCcc--cccc-cccccccc----cCCCCCCEEEEeCC--CCCC--------
Confidence 8 74 56776443110 000000 00000000 0000 00000100 01123468999999 2222
Q ss_pred HHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe--------eccCCCCc
Q 011382 442 ELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL--------LEFMGLPQ 485 (487)
Q Consensus 442 ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~--------~~~~g~~~ 485 (487)
-.++|++.|++||.|..|.|+.. ...|+|+|.|.. ..+||+.+
T Consensus 308 -~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~ 362 (509)
T TIGR01642 308 -GEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT 362 (509)
T ss_pred -CHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34789999999999999998643 367999999975 34566553
No 30
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=5.6e-13 Score=129.70 Aligned_cols=82 Identities=32% Similarity=0.436 Sum_probs=76.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+++|-|+|||.++++++|+++|.+||.|. +|.|.+|+.||.+||||||+|.+.++|..||..|||+-+. .
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~--------rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd-~ 258 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPIT--------RVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD-N 258 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccc--------eeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc-e
Confidence 567899999999999999999999999999 9999999999999999999999999999999999999887 2
Q ss_pred CceeEEEEecccc
Q 011382 367 GKIPMSVTQAKFE 379 (487)
Q Consensus 367 ~~i~I~V~~A~~~ 379 (487)
+.|+|+.++.+
T Consensus 259 --LILrvEwskP~ 269 (270)
T KOG0122|consen 259 --LILRVEWSKPS 269 (270)
T ss_pred --EEEEEEecCCC
Confidence 67899988753
No 31
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=2.8e-14 Score=133.54 Aligned_cols=84 Identities=35% Similarity=0.544 Sum_probs=76.7
Q ss_pred CCc-cCCCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 011382 281 SWF-ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD 359 (487)
Q Consensus 281 ~~~-~~~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ld 359 (487)
+|- +.+.+.-|||||||+++||.+|.-+||+||.|. .|.|++|+.||++|||||.+|.+.-|.-+|+.-||
T Consensus 27 SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~v--------dinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~N 98 (219)
T KOG0126|consen 27 SWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIV--------DINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLN 98 (219)
T ss_pred chhhhcccceEEEECCCcccccCCcEEEEeeccCceE--------EEEEEecCCCCcccceEEEEecCccceEEEEeccC
Confidence 564 456788999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CcccCCCCceeEEEEe
Q 011382 360 GTPFRPDGKIPMSVTQ 375 (487)
Q Consensus 360 g~~~~~G~~i~I~V~~ 375 (487)
|..|. |++ |+|..
T Consensus 99 Giki~-gRt--irVDH 111 (219)
T KOG0126|consen 99 GIKIL-GRT--IRVDH 111 (219)
T ss_pred Cceec-cee--EEeee
Confidence 99998 875 45543
No 32
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=6.6e-13 Score=128.69 Aligned_cols=80 Identities=26% Similarity=0.366 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.-|+|||+||+|.++.+.|+.+|++||.|. ...++.|+.||++||||||+|.+.++|..|++ |-..|-+|
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~--------eavvitd~~t~rskGyGfVTf~d~~aa~rAc~--dp~piIdG 80 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIV--------EAVVITDKNTGRSKGYGFVTFRDAEAATRACK--DPNPIIDG 80 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceE--------EEEEEeccCCccccceeeEEeecHHHHHHHhc--CCCCcccc
Confidence 468999999999999999999999999999 89999999999999999999999999999997 44444447
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
|+ -.+..|.+
T Consensus 81 R~--aNcnlA~l 90 (247)
T KOG0149|consen 81 RK--ANCNLASL 90 (247)
T ss_pred cc--cccchhhh
Confidence 64 45666665
No 33
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.37 E-value=1.4e-12 Score=103.32 Aligned_cols=67 Identities=28% Similarity=0.568 Sum_probs=62.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 291 VYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 291 VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
|||+|||+++|+++|+++|+.||.|. .+++..++. |.++|+|||+|.++++|..|++.++|..|+ |+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~--------~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~-g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVE--------KVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEID-GR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEE--------EEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEET-TE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcc--------eEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEEC-CE
Confidence 79999999999999999999999998 999999976 999999999999999999999999999998 65
No 34
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=7.8e-13 Score=117.80 Aligned_cols=80 Identities=30% Similarity=0.439 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
+..++|||+||++.+||++|.++|++||.|+ +|-|-.|+.+..+.||+||+|...++|..|++.++|+.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~ir--------riiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd- 104 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIR--------RIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD- 104 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchh--------eeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc-
Confidence 4567999999999999999999999999999 9999999999999999999999999999999999999998
Q ss_pred CCceeEEEEec
Q 011382 366 DGKIPMSVTQA 376 (487)
Q Consensus 366 G~~i~I~V~~A 376 (487)
.+ +|+|...
T Consensus 105 dr--~ir~D~D 113 (153)
T KOG0121|consen 105 DR--PIRIDWD 113 (153)
T ss_pred cc--ceeeecc
Confidence 44 4666543
No 35
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=4.9e-12 Score=124.11 Aligned_cols=83 Identities=29% Similarity=0.457 Sum_probs=77.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
+..+|||+|||..+|..||..+|++||.|. .-+|..|..||.+||.|||-|++...|+.||..|||..-- |
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrII--------tSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~-g 196 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRII--------TSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS-G 196 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhh--------hhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCC-C
Confidence 456899999999999999999999999999 7788889899999999999999999999999999999998 8
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
++-+|.|+.|.-
T Consensus 197 ~tepItVKFann 208 (360)
T KOG0145|consen 197 CTEPITVKFANN 208 (360)
T ss_pred CCCCeEEEecCC
Confidence 888999998863
No 36
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.34 E-value=3.2e-12 Score=126.86 Aligned_cols=75 Identities=24% Similarity=0.309 Sum_probs=67.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.++|||+|||+.+|+++|+++|+.||.|. +|.|++|+ .++|||||+|.+++++..|| +|||..|. |+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~--------~V~I~~d~---~~~GfAFVtF~d~eaAe~Al-lLnG~~l~-gr 70 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIE--------YVEMQSEN---ERSQIAYVTFKDPQGAETAL-LLSGATIV-DQ 70 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeecC---CCCCEEEEEeCcHHHHHHHH-HhcCCeeC-Cc
Confidence 46899999999999999999999999999 99999885 35799999999999999999 59999998 75
Q ss_pred ceeEEEEecc
Q 011382 368 KIPMSVTQAK 377 (487)
Q Consensus 368 ~i~I~V~~A~ 377 (487)
+|+|.++.
T Consensus 71 --~V~Vt~a~ 78 (260)
T PLN03120 71 --SVTITPAE 78 (260)
T ss_pred --eEEEEecc
Confidence 57787775
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.34 E-value=8.1e-12 Score=136.90 Aligned_cols=138 Identities=21% Similarity=0.233 Sum_probs=100.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCc--ccC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT--PFR 364 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~--~~~ 364 (487)
.+++|||+|||.++|+++|.+.|++|+....+ .|.+..+...++++|||||+|.++++|..|++.|+.. .+.
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~------vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~ 210 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVD------VIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 210 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceE------EEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEec
Confidence 46799999999999999999999998643311 3333333346789999999999999999999877643 455
Q ss_pred CCCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHH
Q 011382 365 PDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELE 444 (487)
Q Consensus 365 ~G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~ 444 (487)
|+ .|.|..+....... .......++|+|+||-. .+ -+
T Consensus 211 -Gr--~I~VdwA~p~~~~d-----------------------------~~~~~~~k~LfVgNL~~--~~---------te 247 (578)
T TIGR01648 211 -GH--VIAVDWAEPEEEVD-----------------------------EDVMAKVKILYVRNLMT--TT---------TE 247 (578)
T ss_pred -Cc--eEEEEeeccccccc-----------------------------ccccccccEEEEeCCCC--CC---------CH
Confidence 54 56777765321100 00112246899999922 21 35
Q ss_pred HHHHHHhccC--cceEEEEEecCCCCceEEEEEEe
Q 011382 445 ADVQEECVKI--GPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 445 EDVreEC~Kf--G~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
++|++.|++| |.|++|.+. .|+++|.|..
T Consensus 248 e~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s 278 (578)
T TIGR01648 248 EIIEKSFSEFKPGKVERVKKI----RDYAFVHFED 278 (578)
T ss_pred HHHHHHHHhcCCCceEEEEee----cCeEEEEeCC
Confidence 7899999999 999999875 4799999876
No 38
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.33 E-value=1.8e-12 Score=132.29 Aligned_cols=136 Identities=24% Similarity=0.355 Sum_probs=113.5
Q ss_pred CCCccccCCCCcccccccccccccCCCCCCccccccccccccccchhhhcccccchhhhccCCCCCCCchhhhhcccCCC
Q 011382 199 EDTSSQNDGYGIEEMTFLKEEEVFPTVNVTDDLANDEVGKEKLNSTEEKVNSADNVVEEKHNGKRKQPDKQVEKKEANKP 278 (487)
Q Consensus 199 d~~~~~~~~yg~~~~t~~~~eev~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~kr~~~~k~~~k~e~~~~ 278 (487)
|....++++||| ++|+..+.|..++++ ..|+.++|..+++++.+++....
T Consensus 41 d~~t~rsrgFgf--v~f~~~~~v~~vl~~----------------------------~~h~~dgr~ve~k~av~r~~~~~ 90 (311)
T KOG4205|consen 41 DPSTGRSRGFGF--VTFATPEGVDAVLNA----------------------------RTHKLDGRSVEPKRAVSREDQTK 90 (311)
T ss_pred cCCCCCcccccc--eecCCCcchheeecc----------------------------cccccCCccccceeccCcccccc
Confidence 666778999999 889888777655543 56778888888889988887766
Q ss_pred CCCCccCCCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 011382 279 PDSWFELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLL 358 (487)
Q Consensus 279 ~~~~~~~~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~L 358 (487)
...+. ...+|||++||.++++++|+++|.+||.|. .+-++.|..+.+++||+||+|...++|++++. .
T Consensus 91 ~~~~~---~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~--------~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~ 158 (311)
T KOG4205|consen 91 VGRHL---RTKKIFVGGLPPDTTEEDFKDYFEQFGKVA--------DVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-Q 158 (311)
T ss_pred ccccc---ceeEEEecCcCCCCchHHHhhhhhccceeE--------eeEEeecccccccccceeeEeccccccceecc-c
Confidence 55432 234799999999999999999999999998 89999999999999999999999999999995 7
Q ss_pred CCcccCCCCceeEEEEecccc
Q 011382 359 DGTPFRPDGKIPMSVTQAKFE 379 (487)
Q Consensus 359 dg~~~~~G~~i~I~V~~A~~~ 379 (487)
..+.|. |+ .+.|.+|..+
T Consensus 159 ~f~~~~-gk--~vevkrA~pk 176 (311)
T KOG4205|consen 159 KFHDFN-GK--KVEVKRAIPK 176 (311)
T ss_pred ceeeec-Cc--eeeEeeccch
Confidence 889998 64 5788888754
No 39
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.31 E-value=7e-12 Score=118.63 Aligned_cols=79 Identities=37% Similarity=0.609 Sum_probs=74.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.++|||+|||.++|+++|+++|.+||.|. .|.|..|+.+|.++|||||+|.+.+++..|+..|+|..|. |+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~--------~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~-~~ 185 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVK--------RVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE-GR 185 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCcee--------EEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC-Cc
Confidence 47999999999999999999999999998 9999999889999999999999999999999999999998 75
Q ss_pred ceeEEEEecc
Q 011382 368 KIPMSVTQAK 377 (487)
Q Consensus 368 ~i~I~V~~A~ 377 (487)
+|.|..+.
T Consensus 186 --~~~v~~~~ 193 (306)
T COG0724 186 --PLRVQKAQ 193 (306)
T ss_pred --eeEeeccc
Confidence 57777765
No 40
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.30 E-value=8.1e-12 Score=117.18 Aligned_cols=136 Identities=21% Similarity=0.284 Sum_probs=107.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
....+|||+||+..++++-|.++|-++|.|. .+++.+|+.+..++|||||+|.+.++|+-||++||...+-
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv--------~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY- 77 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVV--------NLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY- 77 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCcee--------eeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc-
Confidence 4567999999999999999999999999999 9999999999999999999999999999999999999998
Q ss_pred CCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHH
Q 011382 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (487)
Q Consensus 366 G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~E 445 (487)
|+ +|+|..|.-.++ .......+.++|| ||+ +.|
T Consensus 78 gr--pIrv~kas~~~~---------------------------------nl~vganlfvgNL--------d~~----vDe 110 (203)
T KOG0131|consen 78 GR--PIRVNKASAHQK---------------------------------NLDVGANLFVGNL--------DPE----VDE 110 (203)
T ss_pred Cc--eeEEEecccccc---------------------------------ccccccccccccc--------Ccc----hhH
Confidence 75 678887761100 1112367899999 221 222
Q ss_pred -HHHHHhccCcceEEE-EEe----cCCCCceEEEEEEe
Q 011382 446 -DVQEECVKIGPVDSV-KVM----KLNVEINCILIIFL 477 (487)
Q Consensus 446 -DVreEC~KfG~V~~V-~V~----~~~p~Gvv~V~f~~ 477 (487)
-+-+-|++||.+.+. .|+ ..++.|+++|.|.-
T Consensus 111 ~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~s 148 (203)
T KOG0131|consen 111 KLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYAS 148 (203)
T ss_pred HHHHHHHHhccccccCCcccccccCCCCCCCeEEechh
Confidence 257788999988762 222 24788888888654
No 41
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=8.7e-12 Score=124.34 Aligned_cols=83 Identities=29% Similarity=0.414 Sum_probs=77.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
+.-++|||+-|+++++|..|+..|++||.|+ +|.|++|+.||++||||||+|...-+...|.+..+|..|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~Ik--------rirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id- 169 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIK--------RIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID- 169 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcce--------eEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec-
Confidence 5678999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCceeEEEEecc
Q 011382 366 DGKIPMSVTQAK 377 (487)
Q Consensus 366 G~~i~I~V~~A~ 377 (487)
|+.|.|.|++..
T Consensus 170 grri~VDvERgR 181 (335)
T KOG0113|consen 170 GRRILVDVERGR 181 (335)
T ss_pred CcEEEEEecccc
Confidence 887767777665
No 42
>smart00362 RRM_2 RNA recognition motif.
Probab=99.25 E-value=1.9e-11 Score=93.82 Aligned_cols=71 Identities=39% Similarity=0.590 Sum_probs=64.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCce
Q 011382 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKI 369 (487)
Q Consensus 290 ~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i 369 (487)
+|||+|||..++.++|+++|++||.|. .++++.++ |.++|+|||+|.+.+.|..|+..|+|..|. |+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~--------~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~-~~-- 67 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIE--------SVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLG-GR-- 67 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEE--------EEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEEC-CE--
Confidence 489999999999999999999999999 89999875 889999999999999999999999999997 64
Q ss_pred eEEE
Q 011382 370 PMSV 373 (487)
Q Consensus 370 ~I~V 373 (487)
+|+|
T Consensus 68 ~i~v 71 (72)
T smart00362 68 PLRV 71 (72)
T ss_pred EEee
Confidence 4454
No 43
>PLN03213 repressor of silencing 3; Provisional
Probab=99.25 E-value=1.4e-11 Score=129.38 Aligned_cols=77 Identities=18% Similarity=0.355 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCH--HHHHHHHHhcCCcccC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKE--PSVALATQLLDGTPFR 364 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~--esa~~Ai~~Ldg~~~~ 364 (487)
...+||||||++++|+++|+.+|+.||.|. +|.|++ ++| ||||||+|... .++.+||..|||..+.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVk--------dVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWK 76 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVD--------AVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWK 76 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeec
Confidence 346899999999999999999999999999 999994 578 99999999987 7899999999999999
Q ss_pred CCCceeEEEEeccc
Q 011382 365 PDGKIPMSVTQAKF 378 (487)
Q Consensus 365 ~G~~i~I~V~~A~~ 378 (487)
|+ .|+|..|+.
T Consensus 77 -GR--~LKVNKAKP 87 (759)
T PLN03213 77 -GG--RLRLEKAKE 87 (759)
T ss_pred -Cc--eeEEeeccH
Confidence 76 578988874
No 44
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.6e-11 Score=114.55 Aligned_cols=77 Identities=26% Similarity=0.314 Sum_probs=68.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
-+|+|||+||+.++|+.+|..+|++||.|. .|.|-+. +.|||||+|.++-+|+.|+..|||..|. |
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lr--------svWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~c-G 74 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLR--------SVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDIC-G 74 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcce--------eEEEeec-----CCCceEEeccCcccHHHHHhhcCCcccc-C
Confidence 478999999999999999999999999999 8988664 5899999999999999999999999998 7
Q ss_pred CceeEEEEecccc
Q 011382 367 GKIPMSVTQAKFE 379 (487)
Q Consensus 367 ~~i~I~V~~A~~~ 379 (487)
. .|+|+...-.
T Consensus 75 ~--r~rVE~S~G~ 85 (195)
T KOG0107|consen 75 S--RIRVELSTGR 85 (195)
T ss_pred c--eEEEEeecCC
Confidence 5 5677766543
No 45
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.23 E-value=3.2e-11 Score=118.39 Aligned_cols=75 Identities=27% Similarity=0.390 Sum_probs=66.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
..+|||+||++.+|+++|+++|+.||.|. .|+|++| +..+|||||+|.++++++.|| +|||..|. ++
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~--------~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~-d~ 71 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIE--------HVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIV-DQ 71 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeE--------EEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeC-Cc
Confidence 45899999999999999999999999999 9999988 456789999999999999999 69999998 65
Q ss_pred ceeEEEEecc
Q 011382 368 KIPMSVTQAK 377 (487)
Q Consensus 368 ~i~I~V~~A~ 377 (487)
+|.|.++.
T Consensus 72 --~I~It~~~ 79 (243)
T PLN03121 72 --RVCITRWG 79 (243)
T ss_pred --eEEEEeCc
Confidence 56777644
No 46
>smart00360 RRM RNA recognition motif.
Probab=99.21 E-value=4.1e-11 Score=91.49 Aligned_cols=70 Identities=40% Similarity=0.602 Sum_probs=64.1
Q ss_pred EcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCceeEE
Q 011382 293 VTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMS 372 (487)
Q Consensus 293 V~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i~I~ 372 (487)
|+|||..++.++|+.+|++||.|. .+++..++.++.++|+|||+|.+.++|..|+..|++..+. |+ +|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~--------~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~-~~--~~~ 69 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIE--------SVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD-GR--PLK 69 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEe--------EEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC-Cc--EEE
Confidence 679999999999999999999999 8999998778999999999999999999999999999997 65 344
Q ss_pred E
Q 011382 373 V 373 (487)
Q Consensus 373 V 373 (487)
|
T Consensus 70 v 70 (71)
T smart00360 70 V 70 (71)
T ss_pred e
Confidence 4
No 47
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.16 E-value=5.9e-11 Score=126.04 Aligned_cols=79 Identities=25% Similarity=0.445 Sum_probs=74.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCc
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~ 368 (487)
+.|||||||+++++++|.++|+..|.|. .++++.|++||++||||||+|.+.+.+..|++.|||.++. |+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~--------s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~-gr- 88 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVL--------SFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN-GR- 88 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccc--------eeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC-Cc-
Confidence 6899999999999999999999999999 9999999999999999999999999999999999999998 75
Q ss_pred eeEEEEeccc
Q 011382 369 IPMSVTQAKF 378 (487)
Q Consensus 369 i~I~V~~A~~ 378 (487)
+|+|.++.-
T Consensus 89 -~l~v~~~~~ 97 (435)
T KOG0108|consen 89 -KLRVNYASN 97 (435)
T ss_pred -eEEeecccc
Confidence 578887764
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=1.7e-11 Score=127.12 Aligned_cols=84 Identities=26% Similarity=0.368 Sum_probs=78.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+.+|||+-|+..+||.+++++|++||.|+ .|.|.+| ..|.+||+|||+|...+-|..||+.|||..-..|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ie--------d~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeG 193 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIE--------DCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEG 193 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccc--------hhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeecc
Confidence 356899999999999999999999999999 8999999 5899999999999999999999999999986669
Q ss_pred CceeEEEEecccc
Q 011382 367 GKIPMSVTQAKFE 379 (487)
Q Consensus 367 ~~i~I~V~~A~~~ 379 (487)
+..+|-|..|..+
T Consensus 194 cs~PLVVkFADtq 206 (510)
T KOG0144|consen 194 CSQPLVVKFADTQ 206 (510)
T ss_pred CCCceEEEecccC
Confidence 9889999999864
No 49
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2.2e-10 Score=120.00 Aligned_cols=139 Identities=19% Similarity=0.223 Sum_probs=102.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.+.|||.||+.++|...|.++|+.||.|. +|++.+| ..| +||| ||+|.++++|..||..|||..+. |.
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~il--------S~kv~~~-~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~-~k 143 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNIL--------SCKVATD-ENG-SKGY-FVQFESEESAKKAIEKLNGMLLN-GK 143 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCee--------EEEEEEc-CCC-ceee-EEEeCCHHHHHHHHHHhcCcccC-CC
Confidence 33499999999999999999999999999 9999999 467 9999 99999999999999999999998 64
Q ss_pred ceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHHH
Q 011382 368 KIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADV 447 (487)
Q Consensus 368 ~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDV 447 (487)
+|.|.++.... ........ . ...-..|+++|.- . .-..+.|
T Consensus 144 --ki~vg~~~~~~--er~~~~~~---~---------------------~~~~t~v~vk~~~--~---------~~~~~~l 184 (369)
T KOG0123|consen 144 --KIYVGLFERKE--EREAPLGE---Y---------------------KKRFTNVYVKNLE--E---------DSTDEEL 184 (369)
T ss_pred --eeEEeeccchh--hhcccccc---h---------------------hhhhhhhheeccc--c---------ccchHHH
Confidence 45666554221 11000000 0 0011245555541 1 1124578
Q ss_pred HHHhccCcceEEEEEecC---CCCceEEEEEEe
Q 011382 448 QEECVKIGPVDSVKVMKL---NVEINCILIIFL 477 (487)
Q Consensus 448 reEC~KfG~V~~V~V~~~---~p~Gvv~V~f~~ 477 (487)
.+-+..||.|+++.|... .+.|+++|.|.-
T Consensus 185 ~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~ 217 (369)
T KOG0123|consen 185 KDLFSAYGSITSVAVMRDSIGKSKGFGFVNFEN 217 (369)
T ss_pred HHhhcccCcceEEEEeecCCCCCCCccceeecC
Confidence 999999999999999863 468899999865
No 50
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=9.4e-11 Score=115.77 Aligned_cols=75 Identities=25% Similarity=0.382 Sum_probs=68.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..||+|||+||+.-+|+++|++.|+.||.|. .|++++| +|||||-|.+.|+|..||..|||++|.
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~--------EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~- 226 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQ--------EVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIG- 226 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcce--------EEEEecc------cceEEEEecchhhHHHHHHHhcCceeC-
Confidence 5799999999999999999999999999999 9999988 799999999999999999999999998
Q ss_pred CCceeEEEEecc
Q 011382 366 DGKIPMSVTQAK 377 (487)
Q Consensus 366 G~~i~I~V~~A~ 377 (487)
|+ .++....+
T Consensus 227 G~--~VkCsWGK 236 (321)
T KOG0148|consen 227 GQ--LVRCSWGK 236 (321)
T ss_pred ce--EEEEeccc
Confidence 65 35666554
No 51
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.12 E-value=1.5e-10 Score=115.21 Aligned_cols=122 Identities=16% Similarity=0.234 Sum_probs=95.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCc
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~ 368 (487)
.++||+|||..+++.+|+.+|++||+|. .|.|+++ ||||...+...+..||+-|+|..|. |
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVl--------ECDIvKN--------YgFVHiEdktaaedairNLhgYtLh-g-- 63 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVL--------ECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLH-G-- 63 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceE--------eeeeecc--------cceEEeecccccHHHHhhcccceec-c--
Confidence 3699999999999999999999999999 7888865 8999999999999999999999998 6
Q ss_pred eeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHHHH
Q 011382 369 IPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQ 448 (487)
Q Consensus 369 i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVr 448 (487)
..|+|+.++.+.+ .+..+.+-|+-.- . .-.+||
T Consensus 64 ~nInVeaSksKsk------------------------------------~stkl~vgNis~t---c--------tn~ElR 96 (346)
T KOG0109|consen 64 VNINVEASKSKSK------------------------------------ASTKLHVGNISPT---C--------TNQELR 96 (346)
T ss_pred eEEEEEeccccCC------------------------------------CccccccCCCCcc---c--------cCHHHh
Confidence 5788887763211 1223444454110 1 124679
Q ss_pred HHhccCcceEEEEEecCCCCceEEEEEEeecc
Q 011382 449 EECVKIGPVDSVKVMKLNVEINCILIIFLLEF 480 (487)
Q Consensus 449 eEC~KfG~V~~V~V~~~~p~Gvv~V~f~~~~~ 480 (487)
+-|+|||+|..+.|. .++++|.|...+.
T Consensus 97 a~fe~ygpviecdiv----kdy~fvh~d~~ed 124 (346)
T KOG0109|consen 97 AKFEKYGPVIECDIV----KDYAFVHFDRAED 124 (346)
T ss_pred hhhcccCCceeeeee----cceeEEEEeeccc
Confidence 999999999999994 6788888776554
No 52
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.12 E-value=3.2e-10 Score=87.39 Aligned_cols=73 Identities=34% Similarity=0.543 Sum_probs=65.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCce
Q 011382 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKI 369 (487)
Q Consensus 290 ~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i 369 (487)
+|||+|||..+++++|+++|+.||.|. .+.+..++ .++++|+|||.|.+.++|..|+..+++..+. |+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~--------~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~-~~-- 68 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVE--------SVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELG-GR-- 68 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEE--------EEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeEC-Ce--
Confidence 489999999999999999999999999 99999885 4588999999999999999999999999998 64
Q ss_pred eEEEE
Q 011382 370 PMSVT 374 (487)
Q Consensus 370 ~I~V~ 374 (487)
+|.|.
T Consensus 69 ~~~v~ 73 (74)
T cd00590 69 PLRVE 73 (74)
T ss_pred EEEEe
Confidence 45554
No 53
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=2.3e-10 Score=98.81 Aligned_cols=78 Identities=31% Similarity=0.424 Sum_probs=68.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..|.-|||.|||++||.++..++|.+||.|. .|+|-..+ ..+|-|||+|.+..+|.+|+..|+|+.+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~Ir--------QIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~- 83 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIR--------QIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVD- 83 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceE--------EEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccC-
Confidence 4688899999999999999999999999999 89987654 45999999999999999999999999998
Q ss_pred CCceeEEEEecc
Q 011382 366 DGKIPMSVTQAK 377 (487)
Q Consensus 366 G~~i~I~V~~A~ 377 (487)
++ .|.|-.-.
T Consensus 84 ~r--yl~vlyyq 93 (124)
T KOG0114|consen 84 NR--YLVVLYYQ 93 (124)
T ss_pred Cc--eEEEEecC
Confidence 54 45555433
No 54
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=1.6e-10 Score=116.69 Aligned_cols=79 Identities=22% Similarity=0.266 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
...+|||+|||+..-+.+|+..|.+||+|. +|.|+.+ + .-+||||||+|.++++|++|-+.|+|+.+. |
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~Vl--------dVEIIfN-E-RGSKGFGFVTmen~~dadRARa~LHgt~VE-G 163 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVL--------DVEIIFN-E-RGSKGFGFVTMENPADADRARAELHGTVVE-G 163 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCcee--------eEEEEec-c-CCCCccceEEecChhhHHHHHHHhhcceee-c
Confidence 345899999999999999999999999999 9999998 3 568999999999999999999999999999 8
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
| +|.|..|..
T Consensus 164 R--kIEVn~ATa 173 (376)
T KOG0125|consen 164 R--KIEVNNATA 173 (376)
T ss_pred e--EEEEeccch
Confidence 6 468877764
No 55
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.11 E-value=2.3e-10 Score=117.02 Aligned_cols=139 Identities=17% Similarity=0.218 Sum_probs=103.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||++|++++|++.|+++|++||.|. .|.+++|+.+|+++||+||+|.+++.+..++. ..-+.|. |
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~--------d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~d-g 74 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVT--------DCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLD-G 74 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCcee--------eEEEeccCCCCCcccccceecCCCcchheeec-ccccccC-C
Confidence 457899999999999999999999999999 89999999999999999999999999999985 5566676 6
Q ss_pred CceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHH
Q 011382 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (487)
Q Consensus 367 ~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~ED 446 (487)
+ .|.+.+|.....+.. ......++.|++.-+ +.++ -+++
T Consensus 75 r--~ve~k~av~r~~~~~----------------------------~~~~~~tkkiFvGG~--~~~~---------~e~~ 113 (311)
T KOG4205|consen 75 R--SVEPKRAVSREDQTK----------------------------VGRHLRTKKIFVGGL--PPDT---------TEED 113 (311)
T ss_pred c--cccceeccCcccccc----------------------------cccccceeEEEecCc--CCCC---------chHH
Confidence 5 456666653221110 000112345556554 1111 3578
Q ss_pred HHHHhccCcceEEEEEe-c---CCCCceEEEEEE
Q 011382 447 VQEECVKIGPVDSVKVM-K---LNVEINCILIIF 476 (487)
Q Consensus 447 VreEC~KfG~V~~V~V~-~---~~p~Gvv~V~f~ 476 (487)
+|+.+++||.|..+.++ | ..+.|+++|.|-
T Consensus 114 ~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~ 147 (311)
T KOG4205|consen 114 FKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFD 147 (311)
T ss_pred HhhhhhccceeEeeEEeecccccccccceeeEec
Confidence 99999999999888885 2 236788888754
No 56
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=4.7e-10 Score=122.37 Aligned_cols=143 Identities=20% Similarity=0.233 Sum_probs=105.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCC----ccceEEEEeCCHHHHHHHHHhcCCcc
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGM----KKGDALVTYLKEPSVALATQLLDGTP 362 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~----~KG~AfV~F~~~esa~~Ai~~Ldg~~ 362 (487)
..|+|||.||++++|.+.|..+|++.|.|. .|.|.+-+ .+. |.|||||.|.++++|..|++.|+|+.
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~Vl--------S~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtv 584 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVL--------SIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTV 584 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEE--------EEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCce
Confidence 345599999999999999999999999999 78776653 232 45999999999999999999999999
Q ss_pred cCCCCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHH
Q 011382 363 FRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSE 442 (487)
Q Consensus 363 ~~~G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~e 442 (487)
|. |+. |.|+.+...+.+.. .++ ...| ....-|++||+-- .-
T Consensus 585 ld-GH~--l~lk~S~~k~~~~~--gK~---------------~~~k--------k~~tKIlVRNipF-----------eA 625 (725)
T KOG0110|consen 585 LD-GHK--LELKISENKPASTV--GKK---------------KSKK--------KKGTKILVRNIPF-----------EA 625 (725)
T ss_pred ec-Cce--EEEEeccCcccccc--ccc---------------cccc--------cccceeeeeccch-----------HH
Confidence 99 875 45555542111111 010 0001 1123588999832 23
Q ss_pred HHHHHHHHhccCcceEEEEEecCC----CCceEEEEEEe
Q 011382 443 LEADVQEECVKIGPVDSVKVMKLN----VEINCILIIFL 477 (487)
Q Consensus 443 i~EDVreEC~KfG~V~~V~V~~~~----p~Gvv~V~f~~ 477 (487)
...+||..|..||.|.+|.|+.+- -.|+++|.|-+
T Consensus 626 t~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t 664 (725)
T KOG0110|consen 626 TKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLT 664 (725)
T ss_pred HHHHHHHHHhcccceeeeccchhhcchhhccceeeeccC
Confidence 578999999999999999998652 26888988765
No 57
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.08 E-value=1.5e-10 Score=110.72 Aligned_cols=85 Identities=21% Similarity=0.307 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 285 LKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 285 ~~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
|...+.|-|-||.+-+|.++|+-+|++||.|- .|.|.+|+-|+.++|||||-|....+|+.|+..|||..|+
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vg--------DVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld 81 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVG--------DVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD 81 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCccc--------ceecccccccccccceeEEEeeecchHHHHHHhhcceeec
Confidence 56778999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEeccccc
Q 011382 365 PDGKIPMSVTQAKFEQ 380 (487)
Q Consensus 365 ~G~~i~I~V~~A~~~~ 380 (487)
|+ .|.|+.|.+..
T Consensus 82 -gR--elrVq~arygr 94 (256)
T KOG4207|consen 82 -GR--ELRVQMARYGR 94 (256)
T ss_pred -cc--eeeehhhhcCC
Confidence 75 57899888743
No 58
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=2.1e-10 Score=103.28 Aligned_cols=79 Identities=30% Similarity=0.457 Sum_probs=73.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCce
Q 011382 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKI 369 (487)
Q Consensus 290 ~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i 369 (487)
-|||+|++...|+++|.+.|..||.|+ .|.|-.|+-||-.||||+|+|.+...|+.||..|||..|. |.
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiK--------NihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll-~q-- 142 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIK--------NIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL-GQ-- 142 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhccccc--------ceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh-CC--
Confidence 599999999999999999999999999 9999999999999999999999999999999999999999 76
Q ss_pred eEEEEecccc
Q 011382 370 PMSVTQAKFE 379 (487)
Q Consensus 370 ~I~V~~A~~~ 379 (487)
+|.|..+-.+
T Consensus 143 ~v~VDw~Fv~ 152 (170)
T KOG0130|consen 143 NVSVDWCFVK 152 (170)
T ss_pred ceeEEEEEec
Confidence 4677766543
No 59
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1e-10 Score=112.56 Aligned_cols=82 Identities=28% Similarity=0.363 Sum_probs=76.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+||-.++|+.-|...|-+||.|+ .|++..|-+++++||||||+|...++|..||.-||+.+|. |
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~--------dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~-G 79 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIK--------DIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF-G 79 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchh--------hcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc-c
Confidence 446899999999999999999999999999 9999999999999999999999999999999999999999 8
Q ss_pred CceeEEEEecccc
Q 011382 367 GKIPMSVTQAKFE 379 (487)
Q Consensus 367 ~~i~I~V~~A~~~ 379 (487)
+ .|+|..|...
T Consensus 80 r--tirVN~AkP~ 90 (298)
T KOG0111|consen 80 R--TIRVNLAKPE 90 (298)
T ss_pred e--eEEEeecCCc
Confidence 6 5788888864
No 60
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=1e-09 Score=115.01 Aligned_cols=121 Identities=19% Similarity=0.278 Sum_probs=96.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCc
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~ 368 (487)
..|||| +++|+..|.++|+++|.+. +|++.+|. | +-|||||.|.++.+|..||+.||...|. |+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~--------s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~-~~~ 66 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVL--------SIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLK-GKP 66 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCce--------eEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccC-CcE
Confidence 369999 9999999999999999999 99999995 5 9999999999999999999999999999 754
Q ss_pred eeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHHHH
Q 011382 369 IPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQ 448 (487)
Q Consensus 369 i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVr 448 (487)
|++.... .+ +..|+|+|+ +.++ + -.+|.
T Consensus 67 --~rim~s~---------------------------------rd------~~~~~i~nl--~~~~-~--------~~~~~ 94 (369)
T KOG0123|consen 67 --IRIMWSQ---------------------------------RD------PSLVFIKNL--DESI-D--------NKSLY 94 (369)
T ss_pred --EEeehhc---------------------------------cC------CceeeecCC--Cccc-C--------cHHHH
Confidence 5554332 01 123999998 2221 1 24678
Q ss_pred HHhccCcceEEEEEecCC--CCceEEEEEEe
Q 011382 449 EECVKIGPVDSVKVMKLN--VEINCILIIFL 477 (487)
Q Consensus 449 eEC~KfG~V~~V~V~~~~--p~Gvv~V~f~~ 477 (487)
+-|+.||.|.+|+|..++ ..|. +|.|..
T Consensus 95 d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~ 124 (369)
T KOG0123|consen 95 DTFSEFGNILSCKVATDENGSKGY-FVQFES 124 (369)
T ss_pred HHHHhhcCeeEEEEEEcCCCceee-EEEeCC
Confidence 899999999999997554 4566 777764
No 61
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=99.00 E-value=3.3e-10 Score=115.73 Aligned_cols=92 Identities=37% Similarity=0.637 Sum_probs=86.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+.+|||-+||..+|++.|.++|.+||+|+.|-.|++|.|+||+|++|++.||.|.|+|.++..|..||..+++..|.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~- 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC- 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc-
Confidence 4577899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeEEEEeccccc
Q 011382 366 DGKIPMSVTQAKFEQ 380 (487)
Q Consensus 366 G~~i~I~V~~A~~~~ 380 (487)
|. +|+|..|....
T Consensus 143 gn--~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GN--TIKVSLAERRT 155 (351)
T ss_pred CC--Cchhhhhhhcc
Confidence 64 57888887654
No 62
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.99 E-value=2.3e-09 Score=103.82 Aligned_cols=82 Identities=27% Similarity=0.496 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHH----HhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCC
Q 011382 285 LKVNTHVYVTGLPDDVTVEEMVE----VFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG 360 (487)
Q Consensus 285 ~~~nt~VyV~nLP~diTeeeL~e----~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg 360 (487)
+..|.+|||.||+..|..++|+. +|++||.|. .|... .|.+.+|-|||+|...++|..|+..|+|
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~il--------dI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~g 74 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKIL--------DISAF---KTPKMRGQAFVVFKETEAASAALRALQG 74 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeE--------EEEec---CCCCccCceEEEecChhHHHHHHHHhcC
Confidence 34566999999999999999887 999999998 77665 3689999999999999999999999999
Q ss_pred cccCCCCceeEEEEeccccc
Q 011382 361 TPFRPDGKIPMSVTQAKFEQ 380 (487)
Q Consensus 361 ~~~~~G~~i~I~V~~A~~~~ 380 (487)
+.|- |. .|+|+.|+...
T Consensus 75 fpFy-gK--~mriqyA~s~s 91 (221)
T KOG4206|consen 75 FPFY-GK--PMRIQYAKSDS 91 (221)
T ss_pred Cccc-Cc--hhheecccCcc
Confidence 9999 64 68999998643
No 63
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2e-10 Score=128.65 Aligned_cols=76 Identities=26% Similarity=0.615 Sum_probs=70.9
Q ss_pred ccCcccccccCCCcCCCCccceEEEcCCCcccCCCCHHHHHHHHHcCcccCCcceeccCccCcccCCCchhhhhccc
Q 011382 5 DVDSQQQLSGATNYETAGEEGWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQGRSEWQPLSSIPQFLSGIS 81 (487)
Q Consensus 5 ~~~~q~~~~~~~~~~~~~~~~Wyy~~~ngq~~GP~s~~eL~~~~~~G~i~~~TlVW~eGm~~W~pl~~v~eL~~~~~ 81 (487)
.||.|+|+|++++.+-. +++|||++++|.++||++++-++.||....|...|.+|+-||++|+.|..||||+|.++
T Consensus 938 ~i~~qsn~i~asa~~~~-~~ew~y~dk~~~~vgp~~~~~~~sl~s~k~i~~~s~~~a~gm~~w~~l~~i~~~rw~v~ 1013 (2235)
T KOG1789|consen 938 KVQNQTNVIEASAEQMA-EEEWYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIWAAGMDKWMSLAAVPQFRWTVC 1013 (2235)
T ss_pred CCccchhHHHhhhhhcC-chhheeecCCccccCchhHHHHHHHhcccchhHHHHHHHhhhhHHHhhhhhhhhhhhhh
Confidence 58899999999998544 67799999999999999999999999999999999999999999999999999999654
No 64
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=1.3e-09 Score=107.74 Aligned_cols=81 Identities=22% Similarity=0.367 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
++.|+|||-.||...+..||...|-.||.|. +.|++.|+.|.++|.||||.|+++.|++.||+.|||+.|
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhiv--------SaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQI-- 352 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIV--------SAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQI-- 352 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhcccccee--------eeeeeehhccccccceeeEecCCchhHHHHHHHhcchhh--
Confidence 4689999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCceeEEEEecc
Q 011382 366 DGKIPMSVTQAK 377 (487)
Q Consensus 366 G~~i~I~V~~A~ 377 (487)
|.+ +|+|+.-.
T Consensus 353 GMK-RLKVQLKR 363 (371)
T KOG0146|consen 353 GMK-RLKVQLKR 363 (371)
T ss_pred hhh-hhhhhhcC
Confidence 443 56666433
No 65
>smart00361 RRM_1 RNA recognition motif.
Probab=98.89 E-value=4.7e-09 Score=84.26 Aligned_cols=57 Identities=28% Similarity=0.441 Sum_probs=51.9
Q ss_pred HHHHHHHhh----cCCccccCCCCCCCeEE-EEecCCC--CCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 302 VEEMVEVFS----KCGIIKEDPETKKPRIK-IYVDKET--GMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 302 eeeL~e~Fs----k~G~I~~d~~t~~p~ik-l~~Dk~t--G~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
+++|+++|+ +||.|. +|. |+.++.+ |.++|||||+|.+.++|..|+..|||..+. |+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~--------~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~-gr 65 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVG--------KINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD-GR 65 (70)
T ss_pred chhHHHHHHHHHHhcCCee--------EEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC-CE
Confidence 568888898 999999 885 8888777 999999999999999999999999999998 75
No 66
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=3.9e-09 Score=99.60 Aligned_cols=79 Identities=22% Similarity=0.271 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
+..++|||+|||.+|-+.+|.++|.|||.|. .|.|-.. -...+||||.|.++-+|+-||..-||..+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~--------~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdyd- 71 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIR--------EIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYD- 71 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceE--------EEEeccC---CCCCCeeEEEecCccchhhhhhcccccccC-
Confidence 3457899999999999999999999999999 7877332 345789999999999999999999999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|+ .|+|+.+.-
T Consensus 72 g~--rLRVEfprg 82 (241)
T KOG0105|consen 72 GC--RLRVEFPRG 82 (241)
T ss_pred cc--eEEEEeccC
Confidence 75 689998874
No 67
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.84 E-value=5.1e-09 Score=98.56 Aligned_cols=85 Identities=25% Similarity=0.402 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
+.+.++||+||.+.+++..|.++|++||.|... | ++++|..||+++|||||.|.+.+.++.||..|||..+.
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~-----P--~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~- 165 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISP-----P--KIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC- 165 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccC-----C--cccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc-
Confidence 456799999999999999999999999999832 2 46888889999999999999999999999999999997
Q ss_pred CCceeEEEEeccccc
Q 011382 366 DGKIPMSVTQAKFEQ 380 (487)
Q Consensus 366 G~~i~I~V~~A~~~~ 380 (487)
.+ +|.|..|..+.
T Consensus 166 nr--~itv~ya~k~~ 178 (203)
T KOG0131|consen 166 NR--PITVSYAFKKD 178 (203)
T ss_pred CC--ceEEEEEEecC
Confidence 43 67898887544
No 68
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=1e-08 Score=107.25 Aligned_cols=73 Identities=27% Similarity=0.396 Sum_probs=67.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCce
Q 011382 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKI 369 (487)
Q Consensus 290 ~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i 369 (487)
-|||+||+.++|++.|.++|++||.|. +|+.++| ||||.|...++|-+|++.|||.+|. |.
T Consensus 261 vLYVRNL~~~tTeE~lk~~F~~~G~ve--------RVkk~rD--------YaFVHf~eR~davkAm~~~ngkeld-G~-- 321 (506)
T KOG0117|consen 261 VLYVRNLMESTTEETLKKLFNEFGKVE--------RVKKPRD--------YAFVHFAEREDAVKAMKETNGKELD-GS-- 321 (506)
T ss_pred eeeeeccchhhhHHHHHHHHHhccceE--------Eeecccc--------eeEEeecchHHHHHHHHHhcCceec-Cc--
Confidence 699999999999999999999999999 9988766 9999999999999999999999999 75
Q ss_pred eEEEEecccccc
Q 011382 370 PMSVTQAKFEQK 381 (487)
Q Consensus 370 ~I~V~~A~~~~k 381 (487)
.|.|..|+...+
T Consensus 322 ~iEvtLAKP~~k 333 (506)
T KOG0117|consen 322 PIEVTLAKPVDK 333 (506)
T ss_pred eEEEEecCChhh
Confidence 589999986543
No 69
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.73 E-value=3.5e-08 Score=75.38 Aligned_cols=56 Identities=34% Similarity=0.576 Sum_probs=48.0
Q ss_pred HHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCceeEEEEec
Q 011382 305 MVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQA 376 (487)
Q Consensus 305 L~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i~I~V~~A 376 (487)
|+++|++||.|. +|.+..++ +|+|||+|.+.++|..|++.|||..|. |+ +|+|+.|
T Consensus 1 L~~~f~~fG~V~--------~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~-g~--~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVK--------KIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFN-GR--PLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EE--------EEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEET-TE--EEEEEEE
T ss_pred ChHHhCCcccEE--------EEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEC-Cc--EEEEEEC
Confidence 688999999999 89887652 799999999999999999999999998 65 5777754
No 70
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.68 E-value=3.1e-08 Score=94.88 Aligned_cols=80 Identities=23% Similarity=0.397 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcC-CccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKC-GIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~-G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...-+||..||..+.+.++..+|.+| |.+. +++|-+++-||+|||||||+|.+++.|..|-+.||++-|.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~--------r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~- 118 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVT--------RFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM- 118 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeE--------EEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh-
Confidence 34569999999999999999999988 7888 8999999999999999999999999999999999999998
Q ss_pred CCceeEEEEe
Q 011382 366 DGKIPMSVTQ 375 (487)
Q Consensus 366 G~~i~I~V~~ 375 (487)
|+.+..+|-+
T Consensus 119 e~lL~c~vmp 128 (214)
T KOG4208|consen 119 EHLLECHVMP 128 (214)
T ss_pred hheeeeEEeC
Confidence 7654444443
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.64 E-value=5.6e-08 Score=101.45 Aligned_cols=80 Identities=20% Similarity=0.389 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhh-cCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFS-KCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fs-k~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
..++.|||+|||+++--.+|+++|. +.|.|. .|.|+.| ++|++||+|.|+|.++|++++|++.||-+++.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~--------yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~ 112 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVE--------YVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVN 112 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceE--------eeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhcccc
Confidence 3566799999999999999999997 899999 9999999 68999999999999999999999999999999
Q ss_pred CCCceeEEEEecc
Q 011382 365 PDGKIPMSVTQAK 377 (487)
Q Consensus 365 ~G~~i~I~V~~A~ 377 (487)
|+. |.|+...
T Consensus 113 -GR~--l~vKEd~ 122 (608)
T KOG4212|consen 113 -GRE--LVVKEDH 122 (608)
T ss_pred -Cce--EEEeccC
Confidence 864 5665433
No 72
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.61 E-value=3.6e-08 Score=105.37 Aligned_cols=147 Identities=20% Similarity=0.251 Sum_probs=109.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
+...+||+--|+..+++.+|.++|+.+|.|. .|+|+.|+.++++||.|||+|.+.++|.+|| .|.|.-+.
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVr--------dVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrll- 246 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVR--------DVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL- 246 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcc--------eeEeeccccchhhcceeEEEEecccchhhHh-hhcCCccc-
Confidence 3567899999999999999999999999999 9999999999999999999999999999999 48999998
Q ss_pred CCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeE-EEeecc-CChhhhccchhhHHHH
Q 011382 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPAT-VILRFM-FTPAEMRADENLRSEL 443 (487)
Q Consensus 366 G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~-VvLkNM-f~p~el~~Dp~~~~ei 443 (487)
| .+|.|+....+.+ .. +-+..|-. ......+-. +++.|+ |.+ .
T Consensus 247 g--~pv~vq~sEaekn---------------r~----a~~s~a~~--~k~~~~p~~rl~vgnLHfNi------------t 291 (549)
T KOG0147|consen 247 G--VPVIVQLSEAEKN---------------RA----ANASPALQ--GKGFTGPMRRLYVGNLHFNI------------T 291 (549)
T ss_pred C--ceeEecccHHHHH---------------HH----Hhcccccc--ccccccchhhhhhcccccCc------------h
Confidence 6 4677775542110 01 11111211 000011111 778887 443 3
Q ss_pred HHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 444 EADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 444 ~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
.++++.-++.||.|..|.+... ...|+++|.|-.
T Consensus 292 e~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 292 EDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred HHHHhhhccCcccceeeeeccccccccccCcceEEEec
Confidence 4678999999999999999644 357888888644
No 73
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.49 E-value=4.2e-07 Score=90.18 Aligned_cols=84 Identities=19% Similarity=0.297 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+-|...-.|++++.+|+.||.|. .|.+.+- ..|.+||+|||.|...-.+..||..|+|..-.+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~--------e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpG 88 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIE--------ECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPG 88 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcc--------eeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCC
Confidence 456899999999999999999999999999 8888888 4799999999999999999999999999998888
Q ss_pred CceeEEEEecccc
Q 011382 367 GKIPMSVTQAKFE 379 (487)
Q Consensus 367 ~~i~I~V~~A~~~ 379 (487)
-.-.|-|+.|.-+
T Consensus 89 ASSSLVVK~ADTd 101 (371)
T KOG0146|consen 89 ASSSLVVKFADTD 101 (371)
T ss_pred CccceEEEeccch
Confidence 6667888888743
No 74
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.47 E-value=1.7e-07 Score=93.83 Aligned_cols=75 Identities=24% Similarity=0.268 Sum_probs=66.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
+..|+|+|+||.+.+|.+||+..|.+||.+. .|.|++ +|+||.|...+.|..||+.|||++|.
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpvi--------ecdivk--------dy~fvh~d~~eda~~air~l~~~~~~- 138 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVI--------ECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQ- 138 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCce--------eeeeec--------ceeEEEEeeccchHHHHhcccccccc-
Confidence 3457899999999999999999999999999 788875 49999999999999999999999999
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|. +|+|+.....
T Consensus 139 gk--~m~vq~stsr 150 (346)
T KOG0109|consen 139 GK--RMHVQLSTSR 150 (346)
T ss_pred cc--eeeeeeeccc
Confidence 75 5788777653
No 75
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.47 E-value=3.3e-07 Score=90.85 Aligned_cols=77 Identities=25% Similarity=0.395 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|+|+|||+.|+.++|+++|..||.++ ++-|-.| .+|++.|.|-|+|...++|..|++.++|..+. |
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~--------r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld-G 151 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELK--------RVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALD-G 151 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccce--------EEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccC-C
Confidence 357899999999999999999999999988 8999899 58999999999999999999999999998888 7
Q ss_pred CceeEEEEe
Q 011382 367 GKIPMSVTQ 375 (487)
Q Consensus 367 ~~i~I~V~~ 375 (487)
+. |++..
T Consensus 152 ~~--mk~~~ 158 (243)
T KOG0533|consen 152 RP--MKIEI 158 (243)
T ss_pred ce--eeeEE
Confidence 64 44443
No 76
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.41 E-value=4.2e-07 Score=89.75 Aligned_cols=78 Identities=29% Similarity=0.354 Sum_probs=70.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.+.|||+|+.+.+|.+++..+|+.||.|. ++.|..|+.+|.+||||||.|.+.+.+..|++ |||..|. |.
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~--------~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~-~~ 170 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGIN--------RVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP-GP 170 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCcc--------ceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc-cc
Confidence 45899999999999999999999999999 99999999999999999999999999999998 9999998 75
Q ss_pred ceeEEEEecc
Q 011382 368 KIPMSVTQAK 377 (487)
Q Consensus 368 ~i~I~V~~A~ 377 (487)
. |.|....
T Consensus 171 ~--i~vt~~r 178 (231)
T KOG4209|consen 171 A--IEVTLKR 178 (231)
T ss_pred c--ceeeeee
Confidence 4 5665444
No 77
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=4.3e-07 Score=92.95 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=72.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.+-|||..|.+-+|.++|.-+||.||.|. .|.+++|+.||.+--||||+|.+.+|+++|.-.|++.-|. .+
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~--------sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID-Dr 309 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIV--------SCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID-DR 309 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccce--------eeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec-cc
Confidence 35699999999999999999999999999 9999999999999999999999999999999999999998 44
Q ss_pred ceeEEEEecc
Q 011382 368 KIPMSVTQAK 377 (487)
Q Consensus 368 ~i~I~V~~A~ 377 (487)
+|+|...+
T Consensus 310 --RIHVDFSQ 317 (479)
T KOG0415|consen 310 --RIHVDFSQ 317 (479)
T ss_pred --eEEeehhh
Confidence 57775433
No 78
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.35 E-value=6.2e-07 Score=93.82 Aligned_cols=74 Identities=23% Similarity=0.404 Sum_probs=66.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
++.|.|||.|||.++|-..|++-|..||.+. .+.|+ +.|++|| .|-|.+++.|++||.+|||..+.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~--------yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~- 599 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVL--------YADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLD- 599 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhcccee--------hhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCccc-
Confidence 5678999999999999999999999999999 77773 4699999 89999999999999999999999
Q ss_pred CCceeEEEEe
Q 011382 366 DGKIPMSVTQ 375 (487)
Q Consensus 366 G~~i~I~V~~ 375 (487)
|+. |+|..
T Consensus 600 Gr~--I~V~y 607 (608)
T KOG4212|consen 600 GRN--IKVTY 607 (608)
T ss_pred Cce--eeeee
Confidence 864 56653
No 79
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.28 E-value=6.1e-06 Score=87.70 Aligned_cols=136 Identities=23% Similarity=0.259 Sum_probs=96.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCce
Q 011382 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKI 369 (487)
Q Consensus 290 ~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i 369 (487)
-|-+.+|||.+|+++|.++|+-|++- .+.+.+ .+|+..|.|||+|.+.++|.+|++ .|-..+ |+.
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~I~---------~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~m--g~R- 76 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCGIE---------NLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESM--GHR- 76 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCcee---------EEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHh--CCc-
Confidence 47778999999999999999999863 355554 489999999999999999999997 566666 554
Q ss_pred eEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCC--CCCCCCCCCeEEEeecc-CChhhhccchhhHHHHHHH
Q 011382 370 PMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGG--RDDAKLTIPATVILRFM-FTPAEMRADENLRSELEAD 446 (487)
Q Consensus 370 ~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~--~~~~~~~~~~~VvLkNM-f~p~el~~Dp~~~~ei~ED 446 (487)
-|.|-.+....- +|-- ..+.......+|-|+-| |.. .++|
T Consensus 77 YIEVf~~~~~e~-------------------------d~~~~~~g~~s~~~d~vVRLRGLPfsc------------te~d 119 (510)
T KOG4211|consen 77 YIEVFTAGGAEA-------------------------DWVMRPGGPNSSANDGVVRLRGLPFSC------------TEED 119 (510)
T ss_pred eEEEEccCCccc-------------------------cccccCCCCCCCCCCceEEecCCCccC------------cHHH
Confidence 466665542110 1110 00111123469999999 553 4589
Q ss_pred HHHHhccCcceEEEE-E---ecCCCCceEEEEEEe
Q 011382 447 VQEECVKIGPVDSVK-V---MKLNVEINCILIIFL 477 (487)
Q Consensus 447 VreEC~KfG~V~~V~-V---~~~~p~Gvv~V~f~~ 477 (487)
|.+.|+-+=.|.... + +...+.|-++|.|..
T Consensus 120 I~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~s 154 (510)
T KOG4211|consen 120 IVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFES 154 (510)
T ss_pred HHHHhcCCcccccceeeeccCCCCcccceEEEecC
Confidence 999999776676632 2 233488999999975
No 80
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.28 E-value=1.2e-06 Score=86.53 Aligned_cols=73 Identities=19% Similarity=0.319 Sum_probs=68.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..-+||+|-|-.+++.+.|...|.+|-... ..++++|+-||++|||+||.|.++.++..|+..|||..++ .
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~--------~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg-s 259 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQ--------KAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG-S 259 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchh--------hccccccccccccccceeeeecCHHHHHHHHHhhcccccc-c
Confidence 467899999999999999999999999988 8999999999999999999999999999999999999996 4
Q ss_pred Cc
Q 011382 367 GK 368 (487)
Q Consensus 367 ~~ 368 (487)
+.
T Consensus 260 rp 261 (290)
T KOG0226|consen 260 RP 261 (290)
T ss_pred ch
Confidence 43
No 81
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.24 E-value=7.1e-07 Score=97.98 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=72.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.|+|.|.|||+..|-.+++.+|..||.|. .|+|......+.++|||||.|..+..|..|+..|.++.|. |+
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlk--------svRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHly-GR 683 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLK--------SVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLY-GR 683 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhccccee--------eeccchhhcchhhccceeeeccCcHHHHHHHHhhccccee-ch
Confidence 57999999999999999999999999999 9999877567889999999999999999999999999998 76
Q ss_pred ceeEEEEeccc
Q 011382 368 KIPMSVTQAKF 378 (487)
Q Consensus 368 ~i~I~V~~A~~ 378 (487)
. |-+++|..
T Consensus 684 r--LVLEwA~~ 692 (725)
T KOG0110|consen 684 R--LVLEWAKS 692 (725)
T ss_pred h--hheehhcc
Confidence 4 56777764
No 82
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.20 E-value=3.6e-06 Score=93.25 Aligned_cols=74 Identities=22% Similarity=0.410 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..|+||||+||..+++.+|..+|+.||.|. +|.|+-. +|+|||+.....+|.+|++.|....+. +
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiq--------Si~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~-~ 484 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQ--------SIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVA-D 484 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccce--------eEeeccC------CceeEEEEeehhHHHHHHHHHhccccc-c
Confidence 578999999999999999999999999999 9988643 899999999999999999999999997 4
Q ss_pred CceeEEEEecc
Q 011382 367 GKIPMSVTQAK 377 (487)
Q Consensus 367 ~~i~I~V~~A~ 377 (487)
. .|+|.+|.
T Consensus 485 k--~Iki~Wa~ 493 (894)
T KOG0132|consen 485 K--TIKIAWAV 493 (894)
T ss_pred e--eeEEeeec
Confidence 3 56777776
No 83
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.14 E-value=2.9e-06 Score=91.21 Aligned_cols=84 Identities=20% Similarity=0.292 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
...+|+|+||...+-.-+|+.+|++||.|. -.+++++--+---+.|+||+..+.+.|.+||..|+-++|. |
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVv--------GAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH-G 474 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVV--------GAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH-G 474 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhccee--------ceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc-c
Confidence 356899999999999999999999999999 8999988555556889999999999999999999999998 7
Q ss_pred CceeEEEEecccccc
Q 011382 367 GKIPMSVTQAKFEQK 381 (487)
Q Consensus 367 ~~i~I~V~~A~~~~k 381 (487)
+ .|.|++|+-+.-
T Consensus 475 r--mISVEkaKNEp~ 487 (940)
T KOG4661|consen 475 R--MISVEKAKNEPG 487 (940)
T ss_pred e--eeeeeecccCcc
Confidence 5 589999986553
No 84
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.14 E-value=9e-06 Score=79.13 Aligned_cols=86 Identities=24% Similarity=0.372 Sum_probs=67.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEE-EecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKI-YVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl-~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
-++|||+|||.|+-..||+-+|..|---. .+.| |+++...-.+-+||++|.+..+|..|...|||..|++-
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYE--------gslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE 105 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYE--------GSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPE 105 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCcc--------ceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccc
Confidence 45899999999999999999999986555 3333 34443334568999999999999999999999999863
Q ss_pred CceeEEEEecccccc
Q 011382 367 GKIPMSVTQAKFEQK 381 (487)
Q Consensus 367 ~~i~I~V~~A~~~~k 381 (487)
..-.|+++.|+...|
T Consensus 106 ~~stLhiElAKSNtK 120 (284)
T KOG1457|consen 106 TGSTLHIELAKSNTK 120 (284)
T ss_pred cCceeEeeehhcCcc
Confidence 334678888876543
No 85
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.10 E-value=5.6e-06 Score=88.10 Aligned_cols=80 Identities=24% Similarity=0.314 Sum_probs=61.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.-++|||.|||.++|..+|.++|++||.|+++ .|.+.. + .++...||||+|.+.+++..||+. +-..|. |
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~------~I~vr~-~-~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig-~ 356 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEG------GIQVRS-P-GGKNPCFGFVEFENAAAVQNAIEA-SPLEIG-G 356 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhccccccc------ceEEec-c-CCCcCceEEEEEeecchhhhhhhc-CccccC-C
Confidence 45569999999999999999999999999944 554433 2 244459999999999999999974 555554 4
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+ +|.|+.-.+
T Consensus 357 ~--kl~Veek~~ 366 (419)
T KOG0116|consen 357 R--KLNVEEKRP 366 (419)
T ss_pred e--eEEEEeccc
Confidence 3 566665444
No 86
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.03 E-value=8.5e-06 Score=79.52 Aligned_cols=141 Identities=17% Similarity=0.163 Sum_probs=95.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCc
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~ 368 (487)
.+|||++||+.+.+.+|..+|..||.|. .|.|. .||+||.|.+.-+|+-||.-||+.+|. |.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~--------d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~-~e- 63 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIP--------DADMK--------NGFGFVEFEDPRDADDAVHDLDGKELC-GE- 63 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccc--------cceee--------cccceeccCchhhhhcccchhcCceec-ce-
Confidence 3799999999999999999999999999 66552 579999999999999999999999998 64
Q ss_pred eeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHHHH
Q 011382 369 IPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQ 448 (487)
Q Consensus 369 i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVr 448 (487)
.+.|+.+...+.+.... .--... +|.-....+....+.+++.|+-+ .....||.
T Consensus 64 -~~vve~~r~~~~~~g~~-~~g~r~-------------~~~~~~~~p~~s~~r~~~~~~~~-----------r~~~qdl~ 117 (216)
T KOG0106|consen 64 -RLVVEHARGKRRGRGRP-RGGDRR-------------SDSRRYRPPSRTHFRLIVRNLSL-----------RVSWQDLK 117 (216)
T ss_pred -eeeeecccccccccCCC-CCCCcc-------------chhhccCCcccccceeeeccchh-----------hhhHHHHh
Confidence 36777777432211000 000000 01110011122345677777622 23468999
Q ss_pred HHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 449 EECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 449 eEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
+-+.++|.++.+.+ --+.++|.|..
T Consensus 118 d~~~~~g~~~~~~~----~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 118 DHFRPAGEVTYVDA----RRNFAFVEFSE 142 (216)
T ss_pred hhhcccCCCchhhh----hccccceeehh
Confidence 99999999966655 34455566654
No 87
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.94 E-value=1.4e-05 Score=81.84 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=62.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHh-cCCcccCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQL-LDGTPFRP 365 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~-Ldg~~~~~ 365 (487)
.-++|||+||-..+++.+|+++|-+||.|. .|.++.. +|+|||+|.+.++|++|... +|-..|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeir--------si~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~- 291 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIR--------SIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVIN- 291 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCee--------eEEeecc------cccceeeehhhHHHHHHHHhhcceeeec-
Confidence 456899999999999999999999999999 9988764 56999999999999998754 4655566
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|. +|+|.....
T Consensus 292 G~--Rl~i~Wg~~ 302 (377)
T KOG0153|consen 292 GF--RLKIKWGRP 302 (377)
T ss_pred ce--EEEEEeCCC
Confidence 64 567776664
No 88
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.93 E-value=3.6e-06 Score=81.64 Aligned_cols=71 Identities=25% Similarity=0.352 Sum_probs=65.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
...+|||.||-..++++-|.++|-..|.|. +|.|..++ .++.| ||||.|.+.-+|..|+++|||..+. +
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~--------kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~-~ 76 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVY--------KVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLE-E 76 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceE--------EEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhc-c
Confidence 345899999999999999999999999999 99998885 68888 9999999999999999999999998 6
Q ss_pred Cc
Q 011382 367 GK 368 (487)
Q Consensus 367 ~~ 368 (487)
+.
T Consensus 77 ~e 78 (267)
T KOG4454|consen 77 DE 78 (267)
T ss_pred ch
Confidence 54
No 89
>cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.
Probab=97.90 E-value=1.2e-05 Score=62.90 Aligned_cols=50 Identities=22% Similarity=0.478 Sum_probs=45.7
Q ss_pred cceEEEcCCCcccCCCCHHHHHHHHHcCcccCCcceecc-CccCcccCCCc
Q 011382 24 EGWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQ-GRSEWQPLSSI 73 (487)
Q Consensus 24 ~~Wyy~~~ngq~~GP~s~~eL~~~~~~G~i~~~TlVW~e-Gm~~W~pl~~v 73 (487)
..|||.+.+|+.+|||+.++|+..+.+|+++.+-+|.+. ....|.||.+|
T Consensus 2 ~~W~Y~d~~g~vqGPF~~~~M~~W~~~gyF~~~l~vr~~~~~~~f~~l~~~ 52 (57)
T cd00072 2 VQWFYKDPQGEIQGPFSASQMLQWYQAGYFPDGLQVRRLDNGGEFYTLGDI 52 (57)
T ss_pred cEEEEECCCCCCcCCcCHHHHHHHHHCCCCCCCeEEEECCCCCCcEEHHHH
Confidence 469999999999999999999999999999999999999 45789988765
No 90
>PF02213 GYF: GYF domain; InterPro: IPR003169 The glycine-tyrosine-phenylalanine (GYF) domain is an around 60-amino acid domain which contains a conserved GP[YF]xxxx[MV]xxWxxx[GN]YF motif. It was identified in the human intracellular protein termed CD2 binding protein 2 (CD2BP2), which binds to a site containing two tandem PPPGHR segments within the cytoplasmic region of CD2. Binding experiments and mutational analyses have demonstrated the critical importance of the GYF tripeptide in ligand binding. A GYF domain is also found in several other eukaryotic proteins of unknown function []. It has been proposed that the GYF domain found in these proteins could also be involved in proline-rich sequence recognition []. Resolution of the structure of the CD2BP2 GYF domain by NMR spectroscopy revealed a compact domain with a beta-beta-alpha-beta-beta topology, where the single alpha-helix is tilted away from the twisted, anti-parallel beta-sheet. The conserved residues of the GYF domain create a contiguous patch of predominantly hydrophobic nature which forms an integral part of the ligand-binding site []. There is limited homology within the C-terminal 20-30 amino acids of various GYF domains, supporting the idea that this part of the domain is structurally but not functionally important [].; GO: 0005515 protein binding; PDB: 1SYX_F 1L2Z_A 1GYF_A 1WH2_A 3FMA_C 3K3V_A.
Probab=97.86 E-value=1.3e-05 Score=62.37 Aligned_cols=52 Identities=21% Similarity=0.523 Sum_probs=43.3
Q ss_pred ceEEEcCCCcccCCCCHHHHHHHHHcCcccCCcceeccCccCc-ccCCCchhh
Q 011382 25 GWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQGRSEW-QPLSSIPQF 76 (487)
Q Consensus 25 ~Wyy~~~ngq~~GP~s~~eL~~~~~~G~i~~~TlVW~eGm~~W-~pl~~v~eL 76 (487)
.|||++.+|+.+|||+..+|+..+..|+++.+..|++.+-..| .|+..+-+|
T Consensus 2 ~W~Y~d~~g~~qGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~~~~~~~~~~~ 54 (57)
T PF02213_consen 2 MWYYKDPDGNIQGPFSSEQMQAWYKQGYFPDDLQVRRVDDTQFIDPFGSIDRI 54 (57)
T ss_dssp EEEEESTTS-EEEEEEHHHHHHHHHTTSSTTT-EEEETTSTTT--SSCECCGS
T ss_pred EeEEECCCCCcCCCcCHHHHHHHHHCCCCCCCcEEEEecCCCCcccchhhhhh
Confidence 5999999999999999999999999999999999999987766 666655443
No 91
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.60 E-value=0.00038 Score=60.14 Aligned_cols=84 Identities=15% Similarity=0.259 Sum_probs=68.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcC--CccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKC--GIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~--G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
|+|-|+|||...|.+.|.+++..+ |... -+.|..|-.++.+.|||||-|.+++.+..-.+.++|......
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yD--------F~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYD--------FFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcce--------EEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 789999999999999999998753 4444 778889988999999999999999999999999999998621
Q ss_pred -CceeEEEEeccccc
Q 011382 367 -GKIPMSVTQAKFEQ 380 (487)
Q Consensus 367 -~~i~I~V~~A~~~~ 380 (487)
......|..|..+.
T Consensus 74 ~s~Kvc~i~yAriQG 88 (97)
T PF04059_consen 74 NSKKVCEISYARIQG 88 (97)
T ss_pred CCCcEEEEehhHhhC
Confidence 11234567676543
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.56 E-value=0.0004 Score=72.81 Aligned_cols=143 Identities=22% Similarity=0.243 Sum_probs=95.6
Q ss_pred CcEEEEcCCC-CCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 288 NTHVYVTGLP-DDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 288 nt~VyV~nLP-~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
|+-|-|+||. ..+|.+-|.-+|+-||.|. +|+|+.++ |--|+|.|.+...|.+|+..|+|..+. |
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVq--------RVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~-g 362 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQ--------RVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLY-G 362 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceE--------EEEeeecC-----CcceeeeecchhHHHHHHHHhhcceec-C
Confidence 7789999996 5699999999999999999 99999875 357999999999999999999999999 7
Q ss_pred CceeEEEEeccccc---c--chhhhhhhhhH--HHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhh
Q 011382 367 GKIPMSVTQAKFEQ---K--GERFIAKQVDS--KKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENL 439 (487)
Q Consensus 367 ~~i~I~V~~A~~~~---k--g~~~~~kk~~~--~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~ 439 (487)
+ +|+|...+... + |+......++- ....+. +..+-. +.....+++.++-|.|+-.
T Consensus 363 k--~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrf-----kkpgsK-N~~ni~PpsatlHlsnip~---------- 424 (492)
T KOG1190|consen 363 K--KLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRF-----KKPGSK-NYQNIFPPSATLHLSNIPP---------- 424 (492)
T ss_pred c--eEEEeeccCccccCCCCCCccccccccCCCCchhhc-----cCcccc-cccccCCchhheeeccCCc----------
Confidence 5 57777766532 1 11110000000 000000 000000 0011234567888999843
Q ss_pred HHHHHHHHHHHhccCcceEEEEEe
Q 011382 440 RSELEADVQEECVKIGPVDSVKVM 463 (487)
Q Consensus 440 ~~ei~EDVreEC~KfG~V~~V~V~ 463 (487)
.-.+||+++.+..-|-+.+-..+
T Consensus 425 -svsee~lk~~f~~~g~~vkafkf 447 (492)
T KOG1190|consen 425 -SVSEEDLKNLFQEPGGQVKAFKF 447 (492)
T ss_pred -ccchhHHHHhhhcCCceEEeeee
Confidence 12468899999888877665554
No 93
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.52 E-value=9e-06 Score=91.03 Aligned_cols=117 Identities=21% Similarity=0.289 Sum_probs=89.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.-.++||+||+..+.+.+|...|+.+|.|. .+++..-+.+|+++|.||+.|.+++++..||...+++.+ |
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e--------~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~--g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIE--------VVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF--G 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhh--------hHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh--h
Confidence 446899999999999999999999999998 555543345799999999999999999999986555555 3
Q ss_pred CceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeecc-CChhhhccchhhHHHHHH
Q 011382 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFM-FTPAEMRADENLRSELEA 445 (487)
Q Consensus 367 ~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNM-f~p~el~~Dp~~~~ei~E 445 (487)
. + .|+|+|. |. -.++
T Consensus 736 K-~---------------------------------------------------~v~i~g~pf~------------gt~e 751 (881)
T KOG0128|consen 736 K-I---------------------------------------------------SVAISGPPFQ------------GTKE 751 (881)
T ss_pred h-h---------------------------------------------------hhheeCCCCC------------CchH
Confidence 1 1 1223332 11 1356
Q ss_pred HHHHHhccCcceEEEEEe---cCCCCceEEEEEEe
Q 011382 446 DVQEECVKIGPVDSVKVM---KLNVEINCILIIFL 477 (487)
Q Consensus 446 DVreEC~KfG~V~~V~V~---~~~p~Gvv~V~f~~ 477 (487)
.++..|.++|.|+++.+. ...|.|.++|.|..
T Consensus 752 ~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ 786 (881)
T KOG0128|consen 752 ELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNT 786 (881)
T ss_pred HHHhhccccCCccccchhhhhccccccceeccCCC
Confidence 789999999999999765 34589999999876
No 94
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.50 E-value=0.00013 Score=80.54 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=67.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecC---CCCCccceEEEEeCCHHHHHHHHHhcCCccc
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDK---ETGMKKGDALVTYLKEPSVALATQLLDGTPF 363 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk---~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~ 363 (487)
..|+|||+||++.++++.|-..|..||.|. .++|+.-+ +..+.+-+|||.|.+..+++.|++.|+|..+
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPla--------svKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLA--------SVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCccc--------ceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 578899999999999999999999999999 89987643 3345577899999999999999999999999
Q ss_pred CCCCceeEEEEec
Q 011382 364 RPDGKIPMSVTQA 376 (487)
Q Consensus 364 ~~G~~i~I~V~~A 376 (487)
. +. .|++..+
T Consensus 245 ~-~~--e~K~gWg 254 (877)
T KOG0151|consen 245 M-EY--EMKLGWG 254 (877)
T ss_pred e-ee--eeeeccc
Confidence 8 54 4455444
No 95
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=9.7e-05 Score=79.77 Aligned_cols=68 Identities=22% Similarity=0.366 Sum_probs=60.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
...+|+|-|||..|++++|+.+|+.||.|+ .|+ .|-..+|..||+|.+.-.|+.|++.|++.+|. |
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir--------~ir-----~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~-~ 139 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIR--------EIR-----ETPNKRGIVFVEFYDVRDAERALKALNRREIA-G 139 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchh--------hhh-----cccccCceEEEEEeehHhHHHHHHHHHHHHhh-h
Confidence 345799999999999999999999999999 544 35567899999999999999999999999998 6
Q ss_pred Cc
Q 011382 367 GK 368 (487)
Q Consensus 367 ~~ 368 (487)
+.
T Consensus 140 ~~ 141 (549)
T KOG4660|consen 140 KR 141 (549)
T ss_pred hh
Confidence 53
No 96
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.40 E-value=0.0001 Score=75.12 Aligned_cols=82 Identities=23% Similarity=0.326 Sum_probs=69.8
Q ss_pred CcEEE-EcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 288 NTHVY-VTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 288 nt~Vy-V~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++| |++|+.++|.++|+.+|..||.|. .+++..++.+|.++|||||.|.......+|+.. +...+. |
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~--------~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~-~ 253 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEIT--------SVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIG-G 253 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcce--------eeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCccc-C
Confidence 34666 999999999999999999999999 999999999999999999999999999999875 666665 4
Q ss_pred CceeEEEEecccccc
Q 011382 367 GKIPMSVTQAKFEQK 381 (487)
Q Consensus 367 ~~i~I~V~~A~~~~k 381 (487)
+++.+....+..+
T Consensus 254 --~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 254 --RPLRLEEDEPRPK 266 (285)
T ss_pred --cccccccCCCCcc
Confidence 4567777765543
No 97
>smart00444 GYF Contains conserved Gly-Tyr-Phe residues. Proline-binding domain in CD2-binding protein. Contains conserved Gly-Tyr-Phe residues.
Probab=97.39 E-value=0.00027 Score=55.01 Aligned_cols=51 Identities=16% Similarity=0.445 Sum_probs=46.5
Q ss_pred ceEEEcCCCcccCCCCHHHHHHHHHcCcccCCcceeccCccCcccCCCchh
Q 011382 25 GWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQGRSEWQPLSSIPQ 75 (487)
Q Consensus 25 ~Wyy~~~ngq~~GP~s~~eL~~~~~~G~i~~~TlVW~eGm~~W~pl~~v~e 75 (487)
-|+|.+.+|+.+|||+..+|+..+.+|+++.+-.|++.+-....++..+-.
T Consensus 2 ~W~Y~d~~~~iqGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~~~l~~~~~ 52 (56)
T smart00444 2 LWLYKDPDGEIQGPFTASQMSQWYQAGYFPDSLQIKRLNEPPYDTLGDLDR 52 (56)
T ss_pred EEEEECCCCCEeCCcCHHHHHHHHHCCCCCCCeEEEEcCCCCCCcchhhhh
Confidence 599999999999999999999999999999999999999988888776544
No 98
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.0014 Score=70.59 Aligned_cols=152 Identities=21% Similarity=0.220 Sum_probs=92.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccc---eEEEEeCCHHHHHHHHHhcCCcc
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKG---DALVTYLKEPSVALATQLLDGTP 362 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG---~AfV~F~~~esa~~Ai~~Ldg~~ 362 (487)
...++||||+||++|+|++|...|..||.+..|=.. +.-.. .---+|| |+|+.|.++.+|..- |+...
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~-----k~~~~-~~~ppkGs~~YvflvFe~E~sV~~L---l~aC~ 327 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPG-----KANSR-GRAPPKGSYGYVFLVFEDERSVQSL---LSACS 327 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCC-----Ccccc-ccCCCCCcccEEEEEecchHHHHHH---HHHHh
Confidence 356789999999999999999999999999854221 11111 1123466 999999999888753 34444
Q ss_pred cCCCCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCC-------CCCCCCCeEEEeeccCChhhhcc
Q 011382 363 FRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRD-------DAKLTIPATVILRFMFTPAEMRA 435 (487)
Q Consensus 363 ~~~G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~-------~~~~~~~~~VvLkNMf~p~el~~ 435 (487)
+. ....-|+|+.-.+..+.. ++.-|...| ..+.-+.+||+|--+--|--.
T Consensus 328 ~~-~~~~yf~vss~~~k~k~V--------------------QIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A-- 384 (520)
T KOG0129|consen 328 EG-EGNYYFKVSSPTIKDKEV--------------------QIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTA-- 384 (520)
T ss_pred hc-ccceEEEEecCcccccce--------------------eEEeeEeccchhhhccCcccCccceEEecCCCCcchH--
Confidence 44 333455666554433211 122232110 112235689999887443111
Q ss_pred chhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 436 DENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 436 Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
.++ .-|-+| -||.|..|-|... -|.|-+.|.|.-
T Consensus 385 -~eL-A~imd~------lyGgV~yaGIDtD~k~KYPkGaGRVtFsn 422 (520)
T KOG0129|consen 385 -EEL-AMIMED------LFGGVLYVGIDTDPKLKYPKGAGRVTFSN 422 (520)
T ss_pred -HHH-HHHHHH------hcCceEEEEeccCcccCCCCCcceeeecc
Confidence 001 123333 3999999999643 489999999864
No 99
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.16 E-value=0.00021 Score=72.14 Aligned_cols=41 Identities=34% Similarity=0.601 Sum_probs=36.1
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL 465 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~ 465 (487)
+++|.|+||+.+.+.. +||.+++.+||+|||.|.+|.||.-
T Consensus 281 tkvlllrnmVg~gevd------~elede~keEceKyg~V~~viifei 321 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVD------EELEDETKEECEKYGKVGNVIIFEI 321 (378)
T ss_pred hHHHHhhhhcCccccc------HHHHHHHHHHHHhhcceeeEEEEec
Confidence 4789999999998864 5789999999999999999999853
No 100
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.13 E-value=0.0014 Score=55.17 Aligned_cols=68 Identities=19% Similarity=0.389 Sum_probs=45.9
Q ss_pred cEEEEcCCCCCCCHHH----HHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 289 THVYVTGLPDDVTVEE----MVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 289 t~VyV~nLP~diTeee----L~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
+-|||.|||.+.+... |+.++.-||-=. +.| + .|-|+|-|.+++.|..|.+-|+|-.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkV---------l~v-----~---~~tAilrF~~~~~A~RA~KRmegEdVf 65 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKV---------LSV-----S---GGTAILRFPNQEFAERAQKRMEGEDVF 65 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--E---------EE----------TT-EEEEESSHHHHHHHHHHHTT--SS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEE---------EEE-----e---CCEEEEEeCCHHHHHHHHHhhcccccc
Confidence 5699999999998765 567777897522 222 1 378999999999999999999999998
Q ss_pred CCCceeEEEEec
Q 011382 365 PDGKIPMSVTQA 376 (487)
Q Consensus 365 ~G~~i~I~V~~A 376 (487)
|++ |.|+..
T Consensus 66 -G~k--I~v~~~ 74 (90)
T PF11608_consen 66 -GNK--ISVSFS 74 (90)
T ss_dssp -SS----EEESS
T ss_pred -cce--EEEEEc
Confidence 764 677755
No 101
>smart00361 RRM_1 RNA recognition motif.
Probab=97.03 E-value=0.00074 Score=54.05 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhccCcceEEEE--Eec-----CCCCceEEEEEEee
Q 011382 441 SELEADVQEECVKIGPVDSVK--VMK-----LNVEINCILIIFLL 478 (487)
Q Consensus 441 ~ei~EDVreEC~KfG~V~~V~--V~~-----~~p~Gvv~V~f~~~ 478 (487)
.+|++.++++|++||.|.+|. +.+ .++.|++||.|...
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~ 47 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERS 47 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCH
Confidence 468999999999999999995 443 45689999998763
No 102
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.96 E-value=0.00073 Score=69.62 Aligned_cols=72 Identities=18% Similarity=0.316 Sum_probs=64.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCc--cccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGI--IKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~--I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
.-.+||+||-|.+|.++|.+.....|. |. .+|++.++.+|++||||+|...+..++.+-+++|--.+|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~--------dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH- 150 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFA--------DMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH- 150 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHh--------hhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec-
Confidence 347999999999999999999998885 44 7889999999999999999999999999999999999998
Q ss_pred CCc
Q 011382 366 DGK 368 (487)
Q Consensus 366 G~~ 368 (487)
|+.
T Consensus 151 GQ~ 153 (498)
T KOG4849|consen 151 GQS 153 (498)
T ss_pred CCC
Confidence 764
No 103
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.004 Score=67.74 Aligned_cols=73 Identities=26% Similarity=0.339 Sum_probs=58.5
Q ss_pred CCcEEEEcCCCCCCC------HHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCC
Q 011382 287 VNTHVYVTGLPDDVT------VEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG 360 (487)
Q Consensus 287 ~nt~VyV~nLP~diT------eeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg 360 (487)
..+-|+|-|+|---. ..-|..+|+++|.|. .+.+..+. .|..+||.|++|.+..+|+.|++.|||
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~v--------n~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G 127 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIV--------NMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNG 127 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhcccc--------ceeeccCc-cCCeeeEEEEEecChhhHHHHHHhccc
Confidence 345799999985221 223678899999998 77777774 566999999999999999999999999
Q ss_pred cccCCCCc
Q 011382 361 TPFRPDGK 368 (487)
Q Consensus 361 ~~~~~G~~ 368 (487)
..|...++
T Consensus 128 ~~ldknHt 135 (698)
T KOG2314|consen 128 KRLDKNHT 135 (698)
T ss_pred ceecccce
Confidence 99984443
No 104
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.57 E-value=0.0048 Score=66.20 Aligned_cols=77 Identities=26% Similarity=0.388 Sum_probs=60.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
+.-|-..+||+.+|+++|.++|+-.=.+. + -|-|..|+ .|++.|-|||+|.+.++|++|++ -+-..| |+
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~-~------gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~i--Gh 171 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVP-D------GILLPMDQ-RGRPTGEAFVQFESQESAEIALG-RHRENI--GH 171 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccc-c------ceeeeccC-CCCcccceEEEecCHHHHHHHHH-HHHHhh--cc
Confidence 34688899999999999999999766554 1 47788884 79999999999999999999997 466666 55
Q ss_pred ceeEEEEec
Q 011382 368 KIPMSVTQA 376 (487)
Q Consensus 368 ~i~I~V~~A 376 (487)
. -|.|-++
T Consensus 172 R-YIEvF~S 179 (510)
T KOG4211|consen 172 R-YIEVFRS 179 (510)
T ss_pred c-eEEeehh
Confidence 4 3555443
No 105
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.54 E-value=0.0021 Score=63.94 Aligned_cols=71 Identities=20% Similarity=0.384 Sum_probs=59.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCC--------CCccce----EEEEeCCHHHHHHHHH
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKET--------GMKKGD----ALVTYLKEPSVALATQ 356 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~t--------G~~KG~----AfV~F~~~esa~~Ai~ 356 (487)
.-||+++||+.+....|+++|+.||.|- +|.|-....+ |.+++. |.|+|.+...|.....
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVG--------RvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe 146 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVG--------RVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAE 146 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccc--------eEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999999 8887665444 344443 5699999999999999
Q ss_pred hcCCcccCCCCc
Q 011382 357 LLDGTPFRPDGK 368 (487)
Q Consensus 357 ~Ldg~~~~~G~~ 368 (487)
+|||..|. |++
T Consensus 147 ~Lnn~~Ig-gkk 157 (278)
T KOG3152|consen 147 LLNNTPIG-GKK 157 (278)
T ss_pred HhCCCccC-CCC
Confidence 99999998 543
No 106
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.51 E-value=0.013 Score=57.40 Aligned_cols=76 Identities=24% Similarity=0.389 Sum_probs=65.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..|..+|+.|||..++.+.|..+|..|.-.+ .|+++..+ +|.|||+|.+...+..|.+.|.|..|.+
T Consensus 144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~k--------eir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~ 210 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLSDLFEQFPGFK--------EIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITK 210 (221)
T ss_pred CCceEEEEecCCcchhHHHHHHHHhhCcccc--------eeEeccCC-----CceeEEecchhhhhHHHhhhhccceecc
Confidence 5688899999999999999999999999988 89887643 7899999999998999999999999985
Q ss_pred CCceeEEEEec
Q 011382 366 DGKIPMSVTQA 376 (487)
Q Consensus 366 G~~i~I~V~~A 376 (487)
. ..|.|..|
T Consensus 211 ~--~~m~i~~a 219 (221)
T KOG4206|consen 211 K--NTMQITFA 219 (221)
T ss_pred C--ceEEeccc
Confidence 3 35666654
No 107
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.35 E-value=0.011 Score=65.85 Aligned_cols=73 Identities=25% Similarity=0.428 Sum_probs=63.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCc
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~ 368 (487)
+-|-|.|+|+++|-++|.++|.-|-.+- + +|.|-++ +.|...|.|.|.|.+.+.|..|..-||+..|+ .++
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p-~------sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~-nr~ 938 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDP-N------SIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIR-NRV 938 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCC-C------ceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCccc-cee
Confidence 3688999999999999999999998876 2 6777666 68999999999999999999999999999998 554
Q ss_pred ee
Q 011382 369 IP 370 (487)
Q Consensus 369 i~ 370 (487)
+.
T Consensus 939 V~ 940 (944)
T KOG4307|consen 939 VS 940 (944)
T ss_pred EE
Confidence 33
No 108
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.33 E-value=0.0068 Score=62.48 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=57.6
Q ss_pred CCcEEEEcCCCCCCCHHH------HHHHhhcCCccccCCCCCCCeEEEEecCCCCCc-cceE--EEEeCCHHHHHHHHHh
Q 011382 287 VNTHVYVTGLPDDVTVEE------MVEVFSKCGIIKEDPETKKPRIKIYVDKETGMK-KGDA--LVTYLKEPSVALATQL 357 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeee------L~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~-KG~A--fV~F~~~esa~~Ai~~ 357 (487)
+.+-|||-|||+.+-.++ -.++|.+||.|. +|-+-+.-.+-++ .|.+ ||+|...++|..||..
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~--------KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~ 184 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIK--------KIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAE 184 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhcccee--------EEEecccccccccccccceEEEEecchHHHHHHHHH
Confidence 455689999999888777 248999999999 7755443111111 2323 9999999999999999
Q ss_pred cCCcccCCCCceeEEEEec
Q 011382 358 LDGTPFRPDGKIPMSVTQA 376 (487)
Q Consensus 358 Ldg~~~~~G~~i~I~V~~A 376 (487)
.||+.++ |+- |+....
T Consensus 185 vDgs~~D-Gr~--lkatYG 200 (480)
T COG5175 185 VDGSLLD-GRV--LKATYG 200 (480)
T ss_pred hcccccc-Cce--EeeecC
Confidence 9999998 753 454433
No 109
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.11 E-value=0.026 Score=49.14 Aligned_cols=85 Identities=25% Similarity=0.234 Sum_probs=51.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.+.|.|=|.|+. ....+.++|++||.|.++.+...-.-.+-..+ .-.....-.|+|.++.+|.+||+ -||..|. |.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~-~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~-g~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYP-IPSGGNWIHITYDNPLSAQRALQ-KNGTIFS-GS 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG-----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEET-TC
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeeccccccccccccc-CCCCCCEEEEECCCHHHHHHHHH-hCCeEEc-Cc
Confidence 457999999998 55677889999999984310000000000000 01224578999999999999997 7999997 54
Q ss_pred ceeEEEEecc
Q 011382 368 KIPMSVTQAK 377 (487)
Q Consensus 368 ~i~I~V~~A~ 377 (487)
+.+-|.+.+
T Consensus 82 -~mvGV~~~~ 90 (100)
T PF05172_consen 82 -LMVGVKPCD 90 (100)
T ss_dssp -EEEEEEE-H
T ss_pred -EEEEEEEcH
Confidence 456677664
No 110
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.05 E-value=0.0055 Score=60.15 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=53.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
--++|||.||..++||++|+.+|+.|--.. .++|. .+ .|. -.||+.|...+.|..|+..|.|..|-
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~--------~l~~~-~~-~g~--~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFH--------ILKIR-AR-GGM--PVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCce--------EEEEe-cC-CCc--ceEeecHHHHHHHHHHHHHhhcceec
Confidence 345799999999999999999999997766 56663 22 333 47999999999999999889888874
No 111
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.98 E-value=0.013 Score=51.32 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=37.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCc
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~ 361 (487)
+-|+|.|++..++-++|+++|+.||.|. .|.+. .|.. .|||-|.++++|..|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~--------yVD~~----~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVA--------YVDFS----RGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EE--------EEE------TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcc--------eEEec----CCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 4589999999999999999999999999 66553 3433 6899999999999999877555
No 112
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.97 E-value=0.011 Score=62.23 Aligned_cols=76 Identities=24% Similarity=0.372 Sum_probs=62.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccc-eEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKG-DALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG-~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
-+++|.|+-+-+|-+-|+.+|++||.|. +|--+.. .-| -|+|.|.++.+|..|-..|||..|-.|+
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~Vl--------KIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngc 217 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVL--------KIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGC 217 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeE--------EEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCce
Confidence 3689999999999999999999999998 6654432 234 3899999999999999999999998666
Q ss_pred ceeEEEEeccc
Q 011382 368 KIPMSVTQAKF 378 (487)
Q Consensus 368 ~i~I~V~~A~~ 378 (487)
+.|++...+.
T Consensus 218 -CtLrId~Skl 227 (492)
T KOG1190|consen 218 -CTLRIDFSKL 227 (492)
T ss_pred -eEEEeehhhc
Confidence 6777766553
No 113
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.89 E-value=0.018 Score=59.58 Aligned_cols=75 Identities=17% Similarity=0.354 Sum_probs=59.4
Q ss_pred CCCcEEEEcCC--C--CCCC-------HHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHH
Q 011382 286 KVNTHVYVTGL--P--DDVT-------VEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALA 354 (487)
Q Consensus 286 ~~nt~VyV~nL--P--~diT-------eeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~A 354 (487)
+.+++|.++|| | ...+ .++|++-.++||.|. +|.||- ..+.|.+.|.|.+.+.|+.|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~--------~vvv~d----~hPdGvvtV~f~n~eeA~~c 330 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVR--------KVVVYD----RHPDGVVTVSFRNNEEADQC 330 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcc--------eEEEec----cCCCceeEEEeCChHHHHHH
Confidence 46788999998 2 2233 346677789999999 888873 35789999999999999999
Q ss_pred HHhcCCcccCCCCceeEEEEe
Q 011382 355 TQLLDGTPFRPDGKIPMSVTQ 375 (487)
Q Consensus 355 i~~Ldg~~~~~G~~i~I~V~~ 375 (487)
|++|+|.-|. |+. |..+.
T Consensus 331 iq~m~GR~fd-gRq--l~A~i 348 (382)
T KOG1548|consen 331 IQTMDGRWFD-GRQ--LTASI 348 (382)
T ss_pred HHHhcCeeec-ceE--EEEEE
Confidence 9999999998 764 45443
No 114
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=95.77 E-value=0.0067 Score=59.51 Aligned_cols=69 Identities=19% Similarity=0.342 Sum_probs=59.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
.-++.+.|.+|+..+...+|.++|.++|.+. ...+ ..+++||+|...+++..||..|+|..+.
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~--------~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~- 159 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVT--------YVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLN- 159 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCc--------hhhh--------hccccceeehhhhhhhhcchhccchhhc-
Confidence 4578899999999999999999999999996 2222 4789999999999999999999999999
Q ss_pred CCceeEEE
Q 011382 366 DGKIPMSV 373 (487)
Q Consensus 366 G~~i~I~V 373 (487)
|+. |.+
T Consensus 160 ~~~--l~~ 165 (216)
T KOG0106|consen 160 GRR--ISV 165 (216)
T ss_pred Cce--eee
Confidence 754 555
No 115
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.77 E-value=0.011 Score=62.55 Aligned_cols=69 Identities=29% Similarity=0.388 Sum_probs=56.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEec---CC--CCCc--------cceEEEEeCCHHHHHH
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVD---KE--TGMK--------KGDALVTYLKEPSVAL 353 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~D---k~--tG~~--------KG~AfV~F~~~esa~~ 353 (487)
+..+|.+-|||.|-.-+.|.++|+.||.|+ .|+|..- +. .|.+ +-+|||+|...+.|.+
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~Ik--------sIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~K 301 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIK--------SIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARK 301 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhccccee--------eeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHH
Confidence 567899999999999999999999999999 8888765 22 2333 3468999999999999
Q ss_pred HHHhcCCccc
Q 011382 354 ATQLLDGTPF 363 (487)
Q Consensus 354 Ai~~Ldg~~~ 363 (487)
|.++|+...-
T Consensus 302 A~e~~~~e~~ 311 (484)
T KOG1855|consen 302 ARELLNPEQN 311 (484)
T ss_pred HHHhhchhhh
Confidence 9998865443
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.72 E-value=0.025 Score=61.17 Aligned_cols=64 Identities=25% Similarity=0.358 Sum_probs=59.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhh-cCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHH
Q 011382 285 LKVNTHVYVTGLPDDVTVEEMVEVFS-KCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQ 356 (487)
Q Consensus 285 ~~~nt~VyV~nLP~diTeeeL~e~Fs-k~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~ 356 (487)
++.-.+||||+||.-+|-++|..+|. -||.|. .+-|=+|++=+-+||-|-|+|.+..+--+||.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~--------yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVL--------YVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceE--------EEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 45667999999999999999999999 799999 89998897789999999999999999999996
No 117
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.67 E-value=0.03 Score=58.78 Aligned_cols=68 Identities=24% Similarity=0.288 Sum_probs=50.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCccc
Q 011382 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPF 363 (487)
Q Consensus 290 ~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~ 363 (487)
.|-..|||+++|+.++.++|..--.|.- +.-.|-+++. -+|+..|+|||.|..++.|+.|+. -+-..|
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~----g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~-khrq~i 230 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTG----GTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALR-KHRQNI 230 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccC----CccceEEEEC-CCCCcccceEEEecCHHHHHHHHH-HHHHHH
Confidence 5778999999999999999973222220 1225655655 479999999999999999999996 343334
No 118
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.60 E-value=0.021 Score=43.88 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=41.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHH
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALAT 355 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai 355 (487)
+.|-|+|.|.+..+ .+..+|..||.|. .+.+- ...-..||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~--------~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIV--------DIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEE--------EEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 57899999987664 4555999999999 66553 22458999999999999985
No 119
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=95.55 E-value=0.014 Score=44.16 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=25.6
Q ss_pred HHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 447 VQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 447 VreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
|++.|++||.|.+|.+.+.+ .|.++|.|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~ 30 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFAS 30 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESS
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECC
Confidence 57899999999999998776 7999999865
No 120
>PLN03120 nucleic acid binding protein; Provisional
Probab=95.50 E-value=0.019 Score=57.86 Aligned_cols=48 Identities=15% Similarity=0.029 Sum_probs=38.7
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC-CCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL-NVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~-~p~Gvv~V~f~~ 477 (487)
.++|++.|+-. . -.++||++.|+.||.|.+|.|... ++.|++||.|..
T Consensus 4 ~rtVfVgNLs~--~---------tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d 52 (260)
T PLN03120 4 VRTVKVSNVSL--K---------ATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKD 52 (260)
T ss_pred CCEEEEeCCCC--C---------CCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCc
Confidence 46899999922 1 146899999999999999999754 368999999974
No 121
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.49 E-value=0.046 Score=57.26 Aligned_cols=78 Identities=24% Similarity=0.413 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 287 VNTHVYVTGLPD-DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 287 ~nt~VyV~nLP~-diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+-+-|.||.. .++-+.|..+|.-||.|. +|++++.+ .|-|.|+..+...++.|+..||+..+.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~--------rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lf- 351 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVE--------RVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLF- 351 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCcee--------eEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccc-
Confidence 456788999975 578899999999999999 99999875 578999999999999999999999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|.++.+.|+.-.+
T Consensus 352 G~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 352 GGKLNVCVSKQNF 364 (494)
T ss_pred cceEEEeeccccc
Confidence 7766666665554
No 122
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=95.41 E-value=0.05 Score=52.27 Aligned_cols=73 Identities=23% Similarity=0.374 Sum_probs=60.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC-
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP- 365 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~- 365 (487)
..-+|.|++||..-+-++|++++.+.|.+- ...+++| |.+.|.|...++..-||..|+.+.+..
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvC--------fadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~se 178 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVC--------FADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSE 178 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCee--------eeeeecc-------cceeeeeeehhhHHHHHHhhccccccCc
Confidence 345799999999999999999999999988 7777776 488999999999999999999999873
Q ss_pred CCceeEEEE
Q 011382 366 DGKIPMSVT 374 (487)
Q Consensus 366 G~~i~I~V~ 374 (487)
|.+.-|.|.
T Consensus 179 Ge~~yirv~ 187 (241)
T KOG0105|consen 179 GETAYIRVR 187 (241)
T ss_pred CcEeeEEec
Confidence 433334443
No 123
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=95.35 E-value=0.009 Score=49.06 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=15.1
Q ss_pred CCCeEEEeeccCChhhhccchhh
Q 011382 417 TIPATVILRFMFTPAEMRADENL 439 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~ 439 (487)
..++||+|||||+|.+ +++|.|
T Consensus 52 ~aS~C~lLkNMFDP~~-Ete~~W 73 (73)
T PF15519_consen 52 IASRCFLLKNMFDPAE-ETEPDW 73 (73)
T ss_dssp ---SEEEEESSS-TTC-GGSTTH
T ss_pred CCCceeeeecCCCccc-ccCCCC
Confidence 4578999999999987 556655
No 124
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=95.35 E-value=0.026 Score=43.49 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=36.1
Q ss_pred EEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec---CCCCceEEEEEEe
Q 011382 422 VILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK---LNVEINCILIIFL 477 (487)
Q Consensus 422 VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~---~~p~Gvv~V~f~~ 477 (487)
|+|+|+ |.++ ..++|++.+++||.|.++.|.. ++..|+|+|.|..
T Consensus 1 l~v~nl--p~~~---------t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~ 48 (70)
T PF00076_consen 1 LYVGNL--PPDV---------TEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFES 48 (70)
T ss_dssp EEEESE--TTTS---------SHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESS
T ss_pred cEEcCC--CCcC---------CHHHHHHHHHHhhhcccccccccccccccceEEEEEcC
Confidence 578887 3222 3688999999999999999986 3568999999976
No 125
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=95.11 E-value=0.04 Score=50.66 Aligned_cols=48 Identities=10% Similarity=-0.008 Sum_probs=38.4
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
++.|+|.|+-. ++ -++||++.|++||.|.+|.|... +..|++||.|..
T Consensus 34 ~~~lfVgnL~~--~~---------te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~ 85 (144)
T PLN03134 34 STKLFIGGLSW--GT---------DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFND 85 (144)
T ss_pred CCEEEEeCCCC--CC---------CHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECC
Confidence 56899999932 11 35899999999999999998632 468999999984
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.07 E-value=0.011 Score=67.17 Aligned_cols=68 Identities=26% Similarity=0.328 Sum_probs=63.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
+..|||+|+|+..|.++|+.+|+++|.++ +.+++..+ .|++||-|||.|.+..++..++..++...++
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~--------~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVT--------SLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCcc--------ccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhh
Confidence 56899999999999999999999999999 88888885 7999999999999999999999888888877
No 127
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=94.86 E-value=0.076 Score=54.24 Aligned_cols=68 Identities=15% Similarity=0.235 Sum_probs=49.7
Q ss_pred HHHHHhccCCCCCCCCCC--CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec----CCCCceEEE
Q 011382 400 KVEEKMLGWGGRDDAKLT--IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK----LNVEINCIL 473 (487)
Q Consensus 400 kl~~kl~~w~~~~~~~~~--~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~----~~p~Gvv~V 473 (487)
++...+.-|+++.+.... +-+||+|.-|-- + -.+..|+.||++||+|++|.|.. ..|.|.+||
T Consensus 80 ~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLny--d---------T~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFI 148 (335)
T KOG0113|consen 80 KLERRLKLWDPNNDPNAIGDPYKTLFVARLNY--D---------TSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFI 148 (335)
T ss_pred HHHHHHHhcCCCCCCcccCCccceeeeeeccc--c---------ccHHHHHHHHHhcCcceeEEEeeecccCCccceEEE
Confidence 467788899987554332 346788776621 1 13467999999999999999974 358999999
Q ss_pred EEEee
Q 011382 474 IIFLL 478 (487)
Q Consensus 474 ~f~~~ 478 (487)
.|...
T Consensus 149 eye~e 153 (335)
T KOG0113|consen 149 EYEHE 153 (335)
T ss_pred EeccH
Confidence 98764
No 128
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.66 E-value=0.1 Score=54.67 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=66.1
Q ss_pred CCcEEEEcCC--CCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 287 VNTHVYVTGL--PDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 287 ~nt~VyV~nL--P~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
.|.-|.++=| -+-||.+-|+.+...+|.|. +|-|++. +|- -|.|+|.+.+.|+.|-..|||..|-
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVl--------RIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIY 185 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVL--------RIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIY 185 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceE--------EEEEEec--cce---eeEEeechhHHHHHHHhhccccccc
Confidence 4445555544 46799999999999999999 9998875 454 6999999999999999999999999
Q ss_pred CCCceeEEEEecccc
Q 011382 365 PDGKIPMSVTQAKFE 379 (487)
Q Consensus 365 ~G~~i~I~V~~A~~~ 379 (487)
.|+ ++|+|+.|+..
T Consensus 186 sGC-CTLKIeyAkP~ 199 (494)
T KOG1456|consen 186 SGC-CTLKIEYAKPT 199 (494)
T ss_pred ccc-eeEEEEecCcc
Confidence 777 68999999864
No 129
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=94.58 E-value=0.028 Score=57.51 Aligned_cols=146 Identities=14% Similarity=0.110 Sum_probs=92.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
-.++.||+++.+.+.+.+...+|.+.|... ...+........++|++++.|...+.+..|++ +.+..+..+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~--------~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~ 157 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRV--------DARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDG 157 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcc--------cchhhhhccccccccceeeccccHHHHHHHHH-hhhcccccc
Confidence 356899999999999999999999999877 45555545689999999999999999999997 555433313
Q ss_pred CceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeecc-CChhhhccchhhHHHHHH
Q 011382 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFM-FTPAEMRADENLRSELEA 445 (487)
Q Consensus 367 ~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNM-f~p~el~~Dp~~~~ei~E 445 (487)
+.+.. ..... .+.. ...++..- .......+.++.|+ |.. -++
T Consensus 158 ~~~~~--dl~~~--~~~~----------------~~n~~~~~-----~~~~s~~~~~~~~~~f~~------------~~d 200 (285)
T KOG4210|consen 158 NKGEK--DLNTR--RGLR----------------PKNKLSRL-----SSGPSDTIFFVGELDFSL------------TRD 200 (285)
T ss_pred ccccC--ccccc--cccc----------------ccchhccc-----ccCccccceeeccccccc------------chH
Confidence 32111 11110 0000 00000000 00111233434444 432 245
Q ss_pred HHHHHhccCcceEEEEEecCCC----CceEEEEEEee
Q 011382 446 DVQEECVKIGPVDSVKVMKLNV----EINCILIIFLL 478 (487)
Q Consensus 446 DVreEC~KfG~V~~V~V~~~~p----~Gvv~V~f~~~ 478 (487)
||..++..+|.|++|.+...++ .|+++|.|...
T Consensus 201 ~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~ 237 (285)
T KOG4210|consen 201 DLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAG 237 (285)
T ss_pred HHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhc
Confidence 6679999999999999987765 46667776653
No 130
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=94.08 E-value=0.072 Score=48.48 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=40.2
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEE----ecCCCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKV----MKLNVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V----~~~~p~Gvv~V~f~~~ 478 (487)
.++||++.|+-.- -.+|.|-+.|+++|+|.+|.. +...|.|+|+|.|...
T Consensus 35 ~S~tvyVgNlSfy-----------ttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~ 88 (153)
T KOG0121|consen 35 KSCTVYVGNLSFY-----------TTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSR 88 (153)
T ss_pred hcceEEEeeeeee-----------ecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecc
Confidence 4689999999331 135778999999999999987 4567999999998753
No 131
>PLN03121 nucleic acid binding protein; Provisional
Probab=93.98 E-value=0.096 Score=52.26 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=39.1
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC-CCCceEEEEEEee
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL-NVEINCILIIFLL 478 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~-~p~Gvv~V~f~~~ 478 (487)
..+|++.||-. .-.++||++.|+.||+|.+|.|.+. ...|++||.|...
T Consensus 5 g~TV~V~NLS~-----------~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~ 54 (243)
T PLN03121 5 GYTAEVTNLSP-----------KATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDA 54 (243)
T ss_pred ceEEEEecCCC-----------CCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCH
Confidence 36899999932 1146899999999999999999754 4568999999863
No 132
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.95 E-value=0.061 Score=53.83 Aligned_cols=67 Identities=22% Similarity=0.395 Sum_probs=58.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCccc
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPF 363 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~ 363 (487)
+..|||.||+..+..+.|.+.|+.||.|. +.-++.| ..|+..|-++|.|.+...+..|....+---|
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e--------~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIE--------RAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccc--------hheeeec-ccccccccchhhhhcchhHHHHHHHhccCcc
Confidence 36799999999999999999999999999 7777778 6799999999999999999999987743333
No 133
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=93.93 E-value=0.062 Score=51.19 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=39.0
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
.+-|++-||-+ .-.+.||..+|.+||+|.+|+| .++|-|+++|.|..
T Consensus 10 ~~kVYVGnL~~-----------~a~k~eLE~~F~~yG~lrsvWv-ArnPPGfAFVEFed 56 (195)
T KOG0107|consen 10 NTKVYVGNLGS-----------RATKRELERAFSKYGPLRSVWV-ARNPPGFAFVEFED 56 (195)
T ss_pred CceEEeccCCC-----------CcchHHHHHHHHhcCcceeEEE-eecCCCceEEeccC
Confidence 35799999943 1257889999999999999999 56999999999864
No 134
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=93.87 E-value=0.14 Score=40.06 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=28.9
Q ss_pred HHHHHHHhccCcceEEEEEecCC---CCceEEEEEEe
Q 011382 444 EADVQEECVKIGPVDSVKVMKLN---VEINCILIIFL 477 (487)
Q Consensus 444 ~EDVreEC~KfG~V~~V~V~~~~---p~Gvv~V~f~~ 477 (487)
.+||++.|+.||.|.+|.+.... +.|.|+|.|..
T Consensus 12 ~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~ 48 (70)
T PF14259_consen 12 EEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSS 48 (70)
T ss_dssp HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESS
T ss_pred HHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCC
Confidence 58899999999999999997542 47999999875
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.50 E-value=0.086 Score=60.42 Aligned_cols=78 Identities=23% Similarity=0.270 Sum_probs=66.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+|.++|++|+.-+....|...|..||.|. .|.+ + .|. -||||.|.....++.|+..|-|..|.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir--------~Idy--~--hgq--~yayi~yes~~~aq~a~~~~rgap~G- 517 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIR--------IIDY--R--HGQ--PYAYIQYESPPAAQAATHDMRGAPLG- 517 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcce--------eeec--c--cCC--cceeeecccCccchhhHHHHhcCcCC-
Confidence 4688999999999999999999999999999 5543 2 344 49999999999999999999999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|-..+|+|..|..
T Consensus 518 ~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 518 GPPRRLRVDLASP 530 (975)
T ss_pred CCCcccccccccC
Confidence 4445688887763
No 136
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.34 E-value=0.11 Score=49.44 Aligned_cols=88 Identities=20% Similarity=0.181 Sum_probs=52.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhc-CCccccCCCCCCCeEEE-EecCCCCC-ccceEEEEeCCHHHHHHHHHhcCCccc
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSK-CGIIKEDPETKKPRIKI-YVDKETGM-KKGDALVTYLKEPSVALATQLLDGTPF 363 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk-~G~I~~d~~t~~p~ikl-~~Dk~tG~-~KG~AfV~F~~~esa~~Ai~~Ldg~~~ 363 (487)
..++|.|++||+.+|++++.+.++. ++.... -..+.- +.+...+. .-.-|||.|.+.+++..-+..+||+.|
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~-----w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWD-----WYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE--------EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccc-----eEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 4568999999999999999997776 555420 002221 11111111 234689999999999999999999998
Q ss_pred CC--CCceeEEEEecccc
Q 011382 364 RP--DGKIPMSVTQAKFE 379 (487)
Q Consensus 364 ~~--G~~i~I~V~~A~~~ 379 (487)
.+ |...+-.|+.|-|+
T Consensus 81 ~D~kg~~~~~~VE~Apyq 98 (176)
T PF03467_consen 81 VDSKGNEYPAVVEFAPYQ 98 (176)
T ss_dssp E-TTS-EEEEEEEE-SS-
T ss_pred ECCCCCCcceeEEEcchh
Confidence 74 22234567888773
No 137
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.28 E-value=0.038 Score=63.19 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=58.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+.+||++||+..+++.+|+-.|..+|+|. .|.|-+-+ -+.---||||.|.+...+..|...+-+..|..|
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve--------~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g 441 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVE--------EVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG 441 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhcccc--------ccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccC
Confidence 478899999999999999999999999998 66664432 244445889999999999999888888888643
No 138
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.18 E-value=0.0098 Score=59.34 Aligned_cols=62 Identities=26% Similarity=0.281 Sum_probs=44.6
Q ss_pred CCeEEEeeccCChhhh-----------ccchh---hHHHHHHHHHHHhc-cCcceEEEEEecC---CCCceEEEEEEeec
Q 011382 418 IPATVILRFMFTPAEM-----------RADEN---LRSELEADVQEECV-KIGPVDSVKVMKL---NVEINCILIIFLLE 479 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el-----------~~Dp~---~~~ei~EDVreEC~-KfG~V~~V~V~~~---~p~Gvv~V~f~~~~ 479 (487)
.+.+|+|+||...-+. ..|.+ -+++.-|||..|++ |||+|++++|+++ |--|.|||.|.-.+
T Consensus 42 ~s~t~ll~nmyq~P~~~~~~~d~~~~~~~de~~q~~~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee 121 (260)
T KOG2202|consen 42 FSQTVLLKNMYQNPENSWERRDAQGQFLTDEELQRHEDEFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEE 121 (260)
T ss_pred cchHHHHHHHHhCCCCCchhhhhccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHH
Confidence 4567888888542211 12222 35677899999998 9999999999876 45799999987644
No 139
>smart00362 RRM_2 RNA recognition motif.
Probab=92.69 E-value=0.22 Score=37.30 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=35.2
Q ss_pred EEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCC--CCceEEEEEEee
Q 011382 422 VILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLN--VEINCILIIFLL 478 (487)
Q Consensus 422 VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~--p~Gvv~V~f~~~ 478 (487)
|+|+|+ |..+ ..++|++.+.+||.|..+.+.... +.|.++|.|...
T Consensus 2 v~i~~l--~~~~---------~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~ 49 (72)
T smart00362 2 LFVGNL--PPDV---------TEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESE 49 (72)
T ss_pred EEEcCC--CCcC---------CHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCH
Confidence 678887 2221 357889999999999999987544 579999998764
No 140
>smart00360 RRM RNA recognition motif.
Probab=92.55 E-value=0.17 Score=37.67 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=29.3
Q ss_pred HHHHHHHhccCcceEEEEEecCCC----CceEEEEEEee
Q 011382 444 EADVQEECVKIGPVDSVKVMKLNV----EINCILIIFLL 478 (487)
Q Consensus 444 ~EDVreEC~KfG~V~~V~V~~~~p----~Gvv~V~f~~~ 478 (487)
.+||+..|+.||.|..|.|..... .|.++|.|...
T Consensus 10 ~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~ 48 (71)
T smart00360 10 EEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESE 48 (71)
T ss_pred HHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCH
Confidence 578999999999999999976543 79999998763
No 141
>PLN03213 repressor of silencing 3; Provisional
Probab=92.40 E-value=0.19 Score=54.46 Aligned_cols=49 Identities=10% Similarity=-0.013 Sum_probs=40.2
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEee
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFLL 478 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~~ 478 (487)
.-.|++.||-- + -..+||+..|+.||.|.+|.|++....||+||.|...
T Consensus 10 gMRIYVGNLSy--d---------VTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssd 58 (759)
T PLN03213 10 GVRLHVGGLGE--S---------VGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPS 58 (759)
T ss_pred ceEEEEeCCCC--C---------CCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCC
Confidence 35799999921 1 1458999999999999999999777799999998864
No 142
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.07 E-value=0.077 Score=54.89 Aligned_cols=72 Identities=28% Similarity=0.361 Sum_probs=56.1
Q ss_pred CCcEEEEcCCCCCCCHHHHH---HHhhcCCccccCCCCCCCeEEEEecCC----CCCccceEEEEeCCHHHHHHHHHhcC
Q 011382 287 VNTHVYVTGLPDDVTVEEMV---EVFSKCGIIKEDPETKKPRIKIYVDKE----TGMKKGDALVTYLKEPSVALATQLLD 359 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~---e~Fsk~G~I~~d~~t~~p~ikl~~Dk~----tG~~KG~AfV~F~~~esa~~Ai~~Ld 359 (487)
...-+||-+||.++..+.+- ++|.+||.|. +|.+.++.. .|.+- -+||+|...+.|..||+..+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~--------ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~ 146 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKIN--------KIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVD 146 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccce--------EEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhh
Confidence 35679999999887665543 6899999999 888877651 12222 27999999999999999999
Q ss_pred CcccCCCCc
Q 011382 360 GTPFRPDGK 368 (487)
Q Consensus 360 g~~~~~G~~ 368 (487)
|+.+. |+.
T Consensus 147 g~~~d-g~~ 154 (327)
T KOG2068|consen 147 GFVDD-GRA 154 (327)
T ss_pred hHHhh-hhh
Confidence 99998 653
No 143
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.96 E-value=0.31 Score=42.95 Aligned_cols=49 Identities=8% Similarity=0.154 Sum_probs=39.4
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEE-ecCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKV-MKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V-~~~~p~Gvv~V~f~~ 477 (487)
..++++|+|+ |-. -..|++-+.|.+||+|..|+| +..+..|-++|.+..
T Consensus 17 vnriLyirNL--p~~---------ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYed 66 (124)
T KOG0114|consen 17 VNRILYIRNL--PFK---------ITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYED 66 (124)
T ss_pred hheeEEEecC--Ccc---------ccHHHHHHHhhcccceEEEEecCccCcCceEEEEehH
Confidence 3579999999 222 246788999999999999999 566778999998654
No 144
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=91.58 E-value=0.23 Score=52.40 Aligned_cols=81 Identities=16% Similarity=0.259 Sum_probs=61.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
...|-..|||+..|.++|-.+|..|-.-. +.+ .|.++.+ ..|+..|.|||.|.+.+++..|.+.-+..... ++
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i-~f~----gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk-~R 352 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDI-RFQ----GVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMK-SR 352 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhc-ccc----eeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcc-cc
Confidence 45799999999999999999999887433 111 3788888 57999999999999999999998765544443 32
Q ss_pred ceeEEEEecc
Q 011382 368 KIPMSVTQAK 377 (487)
Q Consensus 368 ~i~I~V~~A~ 377 (487)
-|.|-.+.
T Consensus 353 --YiEvfp~S 360 (508)
T KOG1365|consen 353 --YIEVFPCS 360 (508)
T ss_pred --eEEEeecc
Confidence 35554433
No 145
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=91.11 E-value=0.27 Score=55.16 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
....|||.+||..+++.++...|++.-.|. | .|.|.+-+ +++.++-|||.|..++....|.. +-+.+..|
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ve-d------~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~--~~~k~y~G 502 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVE-D------FIELTRLP-TDLLRPAAFVAFIHPTAPLTASS--VKTKFYPG 502 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhh-h------eeEeccCC-cccccchhhheeccccccchhhh--cccccccC
Confidence 456899999999999999999999877776 2 57777664 89999999999999888888874 44444446
Q ss_pred CceeEEEEe
Q 011382 367 GKIPMSVTQ 375 (487)
Q Consensus 367 ~~i~I~V~~ 375 (487)
.+ .|+|..
T Consensus 503 ~r-~irv~s 510 (944)
T KOG4307|consen 503 HR-IIRVDS 510 (944)
T ss_pred ce-EEEeec
Confidence 54 467653
No 146
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=91.03 E-value=0.51 Score=43.78 Aligned_cols=51 Identities=22% Similarity=0.364 Sum_probs=40.6
Q ss_pred HHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCceeEEEE
Q 011382 304 EMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVT 374 (487)
Q Consensus 304 eL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i~I~V~ 374 (487)
+|.+.|..||.+. -||++-+ .-+|+|.+-.+|-.|+. |||..+. |+. |+|.
T Consensus 52 ~ll~~~~~~Gevv--------LvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~-g~~--l~i~ 102 (146)
T PF08952_consen 52 ELLQKFAQYGEVV--------LVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN-GRT--LKIR 102 (146)
T ss_dssp HHHHHHHCCS-EC--------EEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET-TEE--EEEE
T ss_pred HHHHHHHhCCceE--------EEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC-CEE--EEEE
Confidence 6778899999988 7777533 46899999999999997 8999998 754 4544
No 147
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=89.93 E-value=0.45 Score=47.58 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=39.7
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCC----CCceEEEEEEeec
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLN----VEINCILIIFLLE 479 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~----p~Gvv~V~f~~~~ 479 (487)
+.+|-|.|| ++++. +.||++.+.+||.|.+|.|.... +.|++||.|.-.+
T Consensus 189 ~~tvRvtNL--sed~~---------E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRd 242 (270)
T KOG0122|consen 189 EATVRVTNL--SEDMR---------EDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRD 242 (270)
T ss_pred cceeEEecC--ccccC---------hhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHH
Confidence 468999998 44443 46789999999999999997543 6899999997654
No 148
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.74 E-value=0.79 Score=46.97 Aligned_cols=65 Identities=22% Similarity=0.190 Sum_probs=49.4
Q ss_pred HHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCc-cceEEEEeCCHHHHHHHHHhcCCcccCCCCceeEEEEeccccc
Q 011382 302 VEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMK-KGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQ 380 (487)
Q Consensus 302 eeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~-KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i~I~V~~A~~~~ 380 (487)
++++.+-+.|||.|. +|-|+.++..-.. ----||+|...+++-+|+-.|||..|. | +|..|.|..
T Consensus 300 ede~keEceKyg~V~--------~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG-G-----r~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVG--------NVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG-G-----RVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhccee--------eEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec-c-----eeeeheecc
Confidence 467889999999999 8888776421111 123599999999999999999999997 6 355677643
No 149
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=89.39 E-value=0.71 Score=50.68 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=43.6
Q ss_pred HHHHhhcCCccccCCCCCCCeEEEEecC---CCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCc
Q 011382 305 MVEVFSKCGIIKEDPETKKPRIKIYVDK---ETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (487)
Q Consensus 305 L~e~Fsk~G~I~~d~~t~~p~ikl~~Dk---~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~ 368 (487)
++.-+++||.|. .|.+.++- .-.-.-|--||+|.+.++++.|.+.|.|..|. |++
T Consensus 426 vr~ec~k~g~v~--------~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~-nRt 483 (500)
T KOG0120|consen 426 VRTECAKFGAVR--------SVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA-NRT 483 (500)
T ss_pred HHHHhcccCcee--------EEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeC-CcE
Confidence 445567999999 88887761 12334567799999999999999999999998 653
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=89.20 E-value=0.47 Score=50.22 Aligned_cols=68 Identities=24% Similarity=0.403 Sum_probs=56.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCC---CCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKET---GMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 290 ~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~t---G~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
-|-|.||.+.+|.++++.+|.-.|.|. .++||-.... -...-.|||-|.+..+|..|- +|-++.|- +
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~--------elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfv-d 78 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIP--------ELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFV-D 78 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccc--------cccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceee-e
Confidence 699999999999999999999999999 8888874322 223457999999999999885 67777776 5
Q ss_pred C
Q 011382 367 G 367 (487)
Q Consensus 367 ~ 367 (487)
+
T Consensus 79 r 79 (479)
T KOG4676|consen 79 R 79 (479)
T ss_pred e
Confidence 5
No 151
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=88.43 E-value=2 Score=34.27 Aligned_cols=54 Identities=26% Similarity=0.389 Sum_probs=43.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcC----CccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKC----GIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLL 358 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~----G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~L 358 (487)
..+|+|.|+ .+++.++|..+|..| +.. +|..+-|. -|-|+|.+.+.|..||..|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~---------~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPF---------RIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCc---------eEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 347999998 568999999999988 332 68888773 3679999999999999754
No 152
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=88.18 E-value=0.71 Score=51.18 Aligned_cols=77 Identities=14% Similarity=0.258 Sum_probs=61.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhh-cCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFS-KCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fs-k~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+-|||.||-.-.|.-+|++++. .||.|. .+ .+| +.|..|||.|.+.+.|..-+..|+|...-+
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Ve--------e~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVE--------EF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchH--------HH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCC
Confidence 466799999999999999999999 677777 44 335 358889999999999999999999998765
Q ss_pred CCceeEEEEecc
Q 011382 366 DGKIPMSVTQAK 377 (487)
Q Consensus 366 G~~i~I~V~~A~ 377 (487)
+....|.+.++.
T Consensus 509 sNPK~L~adf~~ 520 (718)
T KOG2416|consen 509 SNPKHLIADFVR 520 (718)
T ss_pred CCCceeEeeecc
Confidence 444445555443
No 153
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=88.11 E-value=0.31 Score=48.92 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=45.2
Q ss_pred HHHHHHhh-cCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCce
Q 011382 303 EEMVEVFS-KCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKI 369 (487)
Q Consensus 303 eeL~e~Fs-k~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i 369 (487)
++|...|+ +||.|. .+++-.+ -.-...|-+||.|...++|++|++.|||--|. |+.|
T Consensus 83 Ed~f~E~~~kygEie--------e~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~-G~pi 140 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIE--------ELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN-GRPI 140 (260)
T ss_pred HHHHHHHHHHhhhhh--------hhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCcccc-CCcc
Confidence 34444455 999999 7766555 33466999999999999999999999999998 7654
No 154
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=87.29 E-value=0.94 Score=47.07 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=39.1
Q ss_pred CCeEEEeecc-CChhhhccchhhHHHHHHHHHHHhccCcceEEEEEe--cCCCCceEEEEEEee
Q 011382 418 IPATVILRFM-FTPAEMRADENLRSELEADVQEECVKIGPVDSVKVM--KLNVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNM-f~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~--~~~p~Gvv~V~f~~~ 478 (487)
.++-|.+.|+ |. + .|| ||+.-|+|||.|..|.|. +|..+|+++|.|.-.
T Consensus 95 ~pkRLhVSNIPFr---F-Rdp--------DL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~ 146 (376)
T KOG0125|consen 95 TPKRLHVSNIPFR---F-RDP--------DLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENP 146 (376)
T ss_pred CCceeEeecCCcc---c-cCc--------cHHHHHHhhCceeeEEEEeccCCCCccceEEecCh
Confidence 3568999999 54 2 244 779999999999999886 677899999997643
No 155
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=87.13 E-value=0.54 Score=46.08 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=29.9
Q ss_pred HHHHHHHhccCcceEEEEEe----cCCCCceEEEEEEe
Q 011382 444 EADVQEECVKIGPVDSVKVM----KLNVEINCILIIFL 477 (487)
Q Consensus 444 ~EDVreEC~KfG~V~~V~V~----~~~p~Gvv~V~f~~ 477 (487)
-+||+-.|+|||.|-.|.|+ .+.+.||+||.|..
T Consensus 27 pd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~ 64 (256)
T KOG4207|consen 27 PDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHD 64 (256)
T ss_pred HHHHHHHHHHhCcccceecccccccccccceeEEEeee
Confidence 46899999999999999996 35689999999976
No 156
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=86.59 E-value=0.98 Score=33.85 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=30.0
Q ss_pred HHHHHHHhccCcceEEEEEecCC---CCceEEEEEEeec
Q 011382 444 EADVQEECVKIGPVDSVKVMKLN---VEINCILIIFLLE 479 (487)
Q Consensus 444 ~EDVreEC~KfG~V~~V~V~~~~---p~Gvv~V~f~~~~ 479 (487)
.++|++.|+.||.|.++.+.... +.|+++|.|...+
T Consensus 13 ~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~ 51 (74)
T cd00590 13 EEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEE 51 (74)
T ss_pred HHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHH
Confidence 57899999999999999997543 4899999988643
No 157
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=85.69 E-value=0.63 Score=52.08 Aligned_cols=69 Identities=22% Similarity=0.209 Sum_probs=57.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
...+|||+||...+..+-+..+..+||.|. .++... ||||.|.++.....|+.++.-..++ |
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~--------s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~-~ 100 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVP--------SWKRDK---------FGFCEFLKHIGDLRASRLLTELNID-D 100 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcch--------hhhhhh---------hcccchhhHHHHHHHHHHhcccCCC-c
Confidence 445899999999999999999999999998 554422 9999999999999999999999997 6
Q ss_pred CceeEEE
Q 011382 367 GKIPMSV 373 (487)
Q Consensus 367 ~~i~I~V 373 (487)
.++...|
T Consensus 101 ~kl~~~~ 107 (668)
T KOG2253|consen 101 QKLIENV 107 (668)
T ss_pred chhhccc
Confidence 5543344
No 158
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=85.56 E-value=1.3 Score=41.58 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=38.5
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
..+|++.|+- .+ -.+++|++.|.+||.|.+|.|... ...|+++|.|..
T Consensus 115 ~~~l~v~nL~--~~---------~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~ 166 (306)
T COG0724 115 NNTLFVGNLP--YD---------VTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFES 166 (306)
T ss_pred CceEEEeCCC--CC---------CCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecC
Confidence 4799999993 12 246899999999999999988532 578999999875
No 159
>KOG1862 consensus GYF domain containing proteins [General function prediction only]
Probab=85.43 E-value=0.9 Score=51.82 Aligned_cols=62 Identities=24% Similarity=0.408 Sum_probs=52.6
Q ss_pred CCccceEEEcCCCcccCCCCHHHHHHHHHcCcccCCcceeccCccC---cccCCCchhhhhcccc
Q 011382 21 AGEEGWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQGRSE---WQPLSSIPQFLSGISQ 82 (487)
Q Consensus 21 ~~~~~Wyy~~~ngq~~GP~s~~eL~~~~~~G~i~~~TlVW~eGm~~---W~pl~~v~eL~~~~~~ 82 (487)
..+..|||.+.+|+.+|||+..+|...+..|++..+..||..--.. -..|+.+.++......
T Consensus 201 ~~d~~~~Y~DP~g~iqGPf~~~~v~~W~~~GyF~~~l~vr~~e~~~~~~f~tl~~~~~~l~~~~~ 265 (673)
T KOG1862|consen 201 DEELSWLYKDPQGQIQGPFSASDVLQWYEAGYFPDDLQVRLGENPERSIFQTLGEVMQLLKTRTG 265 (673)
T ss_pred CcceeEEeeCCCCcccCCchHHHHHHHHhcCccCCCceeeeccCCccccceehhhhhhhcccccC
Confidence 5788899999999999999999999999999999997788776666 7777777777665443
No 160
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=84.33 E-value=1.2 Score=43.05 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=43.5
Q ss_pred CCCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEE--------EeeccCCC
Q 011382 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILII--------FLLEFMGL 483 (487)
Q Consensus 416 ~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f--------~~~~~~g~ 483 (487)
...+.-|+|.|+ |.+| .+.||...|+.||.|..|.+.+. ...|+||+.+ .+--|||.
T Consensus 32 YkdsA~Iyiggl--~~~L---------tEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGi 100 (219)
T KOG0126|consen 32 YKDSAYIYIGGL--PYEL---------TEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGI 100 (219)
T ss_pred cccceEEEECCC--cccc---------cCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCc
Confidence 345789999999 3343 34678899999999999999854 3589999984 44567775
Q ss_pred C
Q 011382 484 P 484 (487)
Q Consensus 484 ~ 484 (487)
-
T Consensus 101 k 101 (219)
T KOG0126|consen 101 K 101 (219)
T ss_pred e
Confidence 4
No 161
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=83.76 E-value=2.7 Score=35.74 Aligned_cols=55 Identities=20% Similarity=0.342 Sum_probs=41.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCC
Q 011382 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG 360 (487)
Q Consensus 290 ~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg 360 (487)
+||--..|..--..+|.++|+.||.|. |..+-| .-|||...+.+.|..|+..++-
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~---------VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY---------VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE---------EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE---------EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 344444999999999999999999997 666655 2699999999999999988863
No 162
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.72 E-value=5 Score=41.46 Aligned_cols=72 Identities=21% Similarity=0.330 Sum_probs=53.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.+.|-|-|.|+.-+. -|-.+|++||.|. +. +.- .+|+ +-+|-|...-.+++||. .||..|. |.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vv--------kh--v~~-~ngN---wMhirYssr~~A~KALs-kng~ii~-g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVV--------KH--VTP-SNGN---WMHIRYSSRTHAQKALS-KNGTIID-GD 259 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeee--------ee--ecC-CCCc---eEEEEecchhHHHHhhh-hcCeeec-cc
Confidence 456778899886554 4556899999998 43 221 2343 88999999999999997 7999997 54
Q ss_pred ceeEEEEecc
Q 011382 368 KIPMSVTQAK 377 (487)
Q Consensus 368 ~i~I~V~~A~ 377 (487)
+.|-|.+..
T Consensus 260 -vmiGVkpCt 268 (350)
T KOG4285|consen 260 -VMIGVKPCT 268 (350)
T ss_pred -eEEeeeecC
Confidence 456777643
No 163
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=77.31 E-value=2.7 Score=41.93 Aligned_cols=37 Identities=11% Similarity=0.037 Sum_probs=29.9
Q ss_pred HHHHHHHHhccCcceEEEEEe-cCC---CCceEEEEEEeec
Q 011382 443 LEADVQEECVKIGPVDSVKVM-KLN---VEINCILIIFLLE 479 (487)
Q Consensus 443 i~EDVreEC~KfG~V~~V~V~-~~~---p~Gvv~V~f~~~~ 479 (487)
-+++||.-|++||+|...+|. |++ .+|+++|.|...+
T Consensus 25 ~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~ 65 (247)
T KOG0149|consen 25 HKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAE 65 (247)
T ss_pred chHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHH
Confidence 468899999999999887664 544 5899999998754
No 164
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=76.88 E-value=2.9 Score=44.86 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=51.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcC--CccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKC--GIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~--G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
+++|++||.+.++..+|..+|... |.-. .+ |++ .||+||.+-+...+.+|++.++|..-..|
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g--------~f-l~k-------~gyafvd~pdq~wa~kaie~~sgk~elqG 65 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSG--------QF-LVK-------SGYAFVDCPDQQWANKAIETLSGKVELQG 65 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCc--------ce-eee-------cceeeccCCchhhhhhhHHhhchhhhhcC
Confidence 469999999999999999999843 2211 11 221 58999999999999999999998865435
Q ss_pred CceeEEEEe
Q 011382 367 GKIPMSVTQ 375 (487)
Q Consensus 367 ~~i~I~V~~ 375 (487)
. ++.|..
T Consensus 66 k--r~e~~~ 72 (584)
T KOG2193|consen 66 K--RQEVEH 72 (584)
T ss_pred c--eeeccc
Confidence 3 344443
No 165
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=73.58 E-value=6.8 Score=41.18 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=38.2
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~~ 478 (487)
..++|+|+++-+ .-++.|||+.|.+||+|.+|+|..+ +|.++|.|.+.
T Consensus 227 ~I~tLyIg~l~d-----------~v~e~dIrdhFyqyGeirsi~~~~~--~~CAFv~ftTR 274 (377)
T KOG0153|consen 227 SIKTLYIGGLND-----------EVLEQDIRDHFYQYGEIRSIRILPR--KGCAFVTFTTR 274 (377)
T ss_pred ceeEEEeccccc-----------chhHHHHHHHHhhcCCeeeEEeecc--cccceeeehhh
Confidence 347999999843 1267899999999999999999654 66888887653
No 166
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=73.45 E-value=4.3 Score=35.43 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=22.1
Q ss_pred HHHHHHHHhccCcceEEEEEecCCCCceEEEEEEee
Q 011382 443 LEADVQEECVKIGPVDSVKVMKLNVEINCILIIFLL 478 (487)
Q Consensus 443 i~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~~ 478 (487)
.++||++.|++||.|..|.+-. .+-.+||+|...
T Consensus 14 ~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~ 47 (105)
T PF08777_consen 14 SREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTP 47 (105)
T ss_dssp -HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS-
T ss_pred CHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCc
Confidence 4899999999999999999844 455677888764
No 167
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=69.62 E-value=31 Score=30.54 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=50.0
Q ss_pred CcEEEEcCCCCC-CCHHHHHHHhhcCC-ccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 288 NTHVYVTGLPDD-VTVEEMVEVFSKCG-IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 288 nt~VyV~nLP~d-iTeeeL~e~Fsk~G-~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
++.|.|=-.|.. ++.+.|..+.+.+- .|. .++|++|. ...+=.+++.|.+..+|+.=...+||..|+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~--------~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIE--------HIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEE--------EEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 455555555554 55566766666654 555 79999872 3456689999999999999999999999973
No 168
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=69.17 E-value=5 Score=43.59 Aligned_cols=47 Identities=17% Similarity=0.112 Sum_probs=38.0
Q ss_pred eEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEe-cC---CCCceEEEEEEe
Q 011382 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVM-KL---NVEINCILIIFL 477 (487)
Q Consensus 420 ~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~-~~---~p~Gvv~V~f~~ 477 (487)
++|++.|+ |.++ .+++|.+.|+..|.|.++++. |+ .+.|++|+.|..
T Consensus 19 ~~v~vgni--p~~~---------se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~ 69 (435)
T KOG0108|consen 19 SSVFVGNI--PYEG---------SEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTD 69 (435)
T ss_pred cceEecCC--CCcc---------cHHHHHHHHhccCccceeeecccccCCCcCceeeEecCc
Confidence 78999998 2222 568899999999999999884 33 478999999876
No 169
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=66.56 E-value=6.1 Score=43.70 Aligned_cols=51 Identities=6% Similarity=-0.031 Sum_probs=40.6
Q ss_pred CCCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEee
Q 011382 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFLL 478 (487)
Q Consensus 416 ~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~~ 478 (487)
...+++|+|-|+-. . -..++|+.-++.||+|..|.- ..+.+|+++|.|+.+
T Consensus 72 ~~~~~~L~v~nl~~--------~---Vsn~~L~~~f~~yGeir~ir~-t~~~~~~~~v~FyDv 122 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPR--------S---VSNDTLLRIFGAYGEIREIRE-TPNKRGIVFVEFYDV 122 (549)
T ss_pred cCccceEEEEecCC--------c---CCHHHHHHHHHhhcchhhhhc-ccccCceEEEEEeeh
Confidence 34678999999822 1 135788999999999999774 788899999999864
No 170
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=62.74 E-value=5.2 Score=46.31 Aligned_cols=72 Identities=22% Similarity=0.218 Sum_probs=60.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC-CCc
Q 011382 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP-DGK 368 (487)
Q Consensus 290 ~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~-G~~ 368 (487)
+.++.|.+-..|..-|.-+|++||.+. .++..+|- -.|+|.|...++|-+|+..|.|.++.. |
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~--------s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g-- 363 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVA--------SAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTG-- 363 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchh--------hheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccC--
Confidence 456777788899999999999999999 88887773 379999999999999999999999753 3
Q ss_pred eeEEEEecc
Q 011382 369 IPMSVTQAK 377 (487)
Q Consensus 369 i~I~V~~A~ 377 (487)
.+.+|..|+
T Consensus 364 ~Ps~V~~ak 372 (1007)
T KOG4574|consen 364 APSRVSFAK 372 (1007)
T ss_pred CceeEEecc
Confidence 356787776
No 171
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=60.77 E-value=12 Score=42.99 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=35.5
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEE
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIF 476 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~ 476 (487)
++||.|..+-. .-.+.||+..++.||.|.+|.+ .++.|.+||..+
T Consensus 421 SrTLwvG~i~k-----------~v~e~dL~~~feefGeiqSi~l--i~~R~cAfI~M~ 465 (894)
T KOG0132|consen 421 SRTLWVGGIPK-----------NVTEQDLANLFEEFGEIQSIIL--IPPRGCAFIKMV 465 (894)
T ss_pred eeeeeeccccc-----------hhhHHHHHHHHHhcccceeEee--ccCCceeEEEEe
Confidence 56788877622 2367899999999999999998 577888888743
No 172
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=57.75 E-value=28 Score=37.91 Aligned_cols=82 Identities=13% Similarity=0.205 Sum_probs=63.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcC-CccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKC-GIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~-G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
++.|+|-.+|..+|..+|-.++..| -.|. .|+|++|. .+ .+=..+|.|.+.++|..-.+.+||..|..=
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~--------~irivRd~-~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQIS--------DIRIVRDG-MP-NRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhh--------eeEEeecC-CC-ceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 6789999999999999999988865 4666 89999973 22 344689999999999999999999999731
Q ss_pred C--c-eeEEEEecccc
Q 011382 367 G--K-IPMSVTQAKFE 379 (487)
Q Consensus 367 ~--~-i~I~V~~A~~~ 379 (487)
. . --|.|..+.+.
T Consensus 144 e~e~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 144 EPEVCHLLYVDRVEVT 159 (493)
T ss_pred CccceeEEEEEEEEEE
Confidence 0 0 13556655554
No 173
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=57.49 E-value=32 Score=27.75 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=39.2
Q ss_pred EEEEc-CCCCCCCHHHHHHHhhcCCcccc-CCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 290 HVYVT-GLPDDVTVEEMVEVFSKCGIIKE-DPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 290 ~VyV~-nLP~diTeeeL~e~Fsk~G~I~~-d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
++||. |--..++..+|..++...+.|.. ++- +|.|+. -|+||.-.. +.++.++..|++..+. |+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG----~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~-gk 67 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIG----RIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIK-GK 67 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEE----EEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SS-S-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEE----EEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCC-Ce
Confidence 55664 33456889999999987655542 211 455543 278888765 4799999999999998 75
Q ss_pred ceeEEEEec
Q 011382 368 KIPMSVTQA 376 (487)
Q Consensus 368 ~i~I~V~~A 376 (487)
+|+|+.|
T Consensus 68 --~v~ve~A 74 (74)
T PF03880_consen 68 --KVRVERA 74 (74)
T ss_dssp -----EEE-
T ss_pred --eEEEEEC
Confidence 4677664
No 174
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=55.58 E-value=33 Score=33.08 Aligned_cols=59 Identities=24% Similarity=0.235 Sum_probs=41.2
Q ss_pred HHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcC--CcccCCCCceeEEEEecc
Q 011382 302 VEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD--GTPFRPDGKIPMSVTQAK 377 (487)
Q Consensus 302 eeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ld--g~~~~~G~~i~I~V~~A~ 377 (487)
...|+++|..++.+. .+...+. -+-.+|.|.+.++|..|...|+ +..|. |. .|+|-.+.
T Consensus 9 ~~~l~~l~~~~~~~~--------~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~-g~--~l~~yf~~ 69 (184)
T PF04847_consen 9 LAELEELFSTYDPPV--------QFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFN-GK--RLRVYFGQ 69 (184)
T ss_dssp HHHHHHHHHTT-SS---------EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEET-TE--E-EEE---
T ss_pred HHHHHHHHHhcCCce--------EEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccC-CC--ceEEEEcc
Confidence 478999999999888 6654432 3457899999999999999999 99998 64 46666553
No 175
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=53.02 E-value=17 Score=36.65 Aligned_cols=49 Identities=14% Similarity=0.055 Sum_probs=37.5
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEe-cCC--CCceEEEEEEee
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVM-KLN--VEINCILIIFLL 478 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~-~~~--p~Gvv~V~f~~~ 478 (487)
+..|+|.|+-. --+.+||++.|+.||.+.+|.|. +++ +.|.+-|.|.-.
T Consensus 83 ~~~v~v~NL~~-----------~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~ 134 (243)
T KOG0533|consen 83 STKVNVSNLPY-----------GVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRR 134 (243)
T ss_pred cceeeeecCCc-----------CcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecch
Confidence 35789999821 23778999999999999999983 443 568888888764
No 176
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=52.20 E-value=3.5 Score=43.88 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=54.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
+.+|||.+|+..+-..++-++|..+|.+. ...+ ..|-..-++-|.|....++..|++ ++|.++.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~--------ya~~----ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVS--------YAHT----ASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhh--------hhhh----hccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 46799999999999999999999999998 4443 456666778899999999999997 6788875
No 177
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=44.67 E-value=6.2 Score=39.19 Aligned_cols=66 Identities=30% Similarity=0.420 Sum_probs=56.9
Q ss_pred EEEEcC----CCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 290 HVYVTG----LPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 290 ~VyV~n----LP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
+++.|+ |...+|++.+.++|+..|.|. .+++-++. +|+.+-++|++|....++..|+...++.++.
T Consensus 82 ~~r~G~shapld~r~~~ei~~~v~s~a~p~~--------~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 82 TLRCGNSHAPLDERVTEEILYEVFSQAGPIE--------GVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred ccccCCCcchhhhhcchhhheeeecccCCCC--------Cccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 345555 666789999999999999999 78888875 5999999999999999999999999998876
No 178
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=42.68 E-value=75 Score=29.85 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=44.2
Q ss_pred CCcEEEEcCCCCCCCH----HHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCc
Q 011382 287 VNTHVYVTGLPDDVTV----EEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (487)
Q Consensus 287 ~nt~VyV~nLP~diTe----eeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~ 361 (487)
.-.+|.|.=|..++.. ..+....+.||.|. +|.+. |+ --|.|+|.+..||-.|+..+...
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~--------SVT~c-----Gr--qsavVvF~d~~SAC~Av~Af~s~ 148 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQ--------SVTLC-----GR--QSAVVVFKDITSACKAVSAFQSR 148 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcc--------eeeec-----CC--ceEEEEehhhHHHHHHHHhhcCC
Confidence 3458888766655433 34556678999999 77653 43 36999999999999999887653
No 179
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=42.62 E-value=16 Score=40.02 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCCCC-CHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 287 VNTHVYVTGLPDDV-TVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 287 ~nt~VyV~nLP~di-TeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
.++.+-+.-.|+.. |..+|..+|.+||.|. .|.+-.. ---|.|+|.....|-.|.. ..+..|+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~--------n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avln- 434 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIE--------NIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLN- 434 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccc--------cccccCc------hhhheeeeeccccccchhc-cccceec-
Confidence 34445555555543 5688999999999998 6655322 3368999999999988874 7899998
Q ss_pred CCceeEEE
Q 011382 366 DGKIPMSV 373 (487)
Q Consensus 366 G~~i~I~V 373 (487)
++.|+|.+
T Consensus 435 nr~iKl~w 442 (526)
T KOG2135|consen 435 NRFIKLFW 442 (526)
T ss_pred CceeEEEE
Confidence 77655443
No 180
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=42.38 E-value=58 Score=26.31 Aligned_cols=50 Identities=26% Similarity=0.279 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 298 DDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 298 ~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
..++.++|+..+.+|+-.. |..|+ || | ||.|.+...|+.+....||..+.
T Consensus 10 ~~~~v~d~K~~Lr~y~~~~-----------I~~d~-tG----f-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWDR-----------IRDDR-TG----F-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CCccHHHHHHHHhcCCcce-----------EEecC-CE----E-EEEECChHHHHHHHHhcCCCEEE
Confidence 3578899999999999765 34453 44 2 89999999999999999999987
No 181
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=39.03 E-value=45 Score=25.39 Aligned_cols=35 Identities=17% Similarity=0.088 Sum_probs=25.4
Q ss_pred HHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEee
Q 011382 442 ELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFLL 478 (487)
Q Consensus 442 ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~~ 478 (487)
+..++|+..+..||+|.++.+.+. .=..+|.|+..
T Consensus 12 ~~~~~vl~~F~~fGeI~~~~~~~~--~~~~~l~y~~~ 46 (53)
T PF14605_consen 12 DLAEEVLEHFASFGEIVDIYVPES--TNWMYLKYKSR 46 (53)
T ss_pred hHHHHHHHHHHhcCCEEEEEcCCC--CcEEEEEECCH
Confidence 356788889999999999998522 33566666553
No 182
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=35.84 E-value=28 Score=34.75 Aligned_cols=48 Identities=8% Similarity=-0.074 Sum_probs=35.8
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEe----cCCCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVM----KLNVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~----~~~p~Gvv~V~f~~ 477 (487)
.+.|.+.|+=- .-..+.+..+++-||.|..|.|. ..|++|++||.|.-
T Consensus 101 ~~sv~v~nvd~-----------~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~ 152 (231)
T KOG4209|consen 101 APSVWVGNVDF-----------LVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSS 152 (231)
T ss_pred CceEEEecccc-----------ccccchhhheeeccCCccceeeeccccCCCcceeEEEeccc
Confidence 46899999811 11234489999999999988884 34689999999865
No 183
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=34.83 E-value=70 Score=33.13 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=38.3
Q ss_pred cCCCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCH
Q 011382 284 ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKE 348 (487)
Q Consensus 284 ~~~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~ 348 (487)
...-.+-||++|||.|+-..+|+..+.+-|-+- ..|.. ..+.|-||..|-+.
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p---------m~isw----kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECTP---------MSISW----KGHFGKCFLHFGNR 377 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCCc---------eeEee----ecCCcceeEecCCc
Confidence 334567799999999999999999998877543 23322 23578899999764
No 184
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=34.36 E-value=6 Score=43.86 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=62.0
Q ss_pred ccCCCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcc
Q 011382 283 FELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP 362 (487)
Q Consensus 283 ~~~~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~ 362 (487)
+.+-..+.+||.|++++++-.+|..+++.+-... ++-|-.+....+.+-++.|+|..--...-|+-.||+..
T Consensus 226 ~n~hke~sll~rni~Pnis~aeIe~~ck~i~~~l--------rfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ir 297 (648)
T KOG2295|consen 226 DNTHKECSLLVRNILPNISVAEIENLCKGIPGFL--------RFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIR 297 (648)
T ss_pred hhhhHHHHHHHhccCCcccHHHHHHHhccCchhe--------eeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcc
Confidence 4445677899999999999999999999987777 67666554456677789999999888999999999998
Q ss_pred cC
Q 011382 363 FR 364 (487)
Q Consensus 363 ~~ 364 (487)
++
T Consensus 298 l~ 299 (648)
T KOG2295|consen 298 LR 299 (648)
T ss_pred cc
Confidence 87
No 185
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=32.33 E-value=52 Score=29.35 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=31.6
Q ss_pred EEEEcCCCCC---------CCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCH-HHHHHHHHh
Q 011382 290 HVYVTGLPDD---------VTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKE-PSVALATQL 357 (487)
Q Consensus 290 ~VyV~nLP~d---------iTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~-esa~~Ai~~ 357 (487)
.+.|-|+|.. .+.++|.+.|+.|..++ ++...++ .-+.|+++|.|.+- .-...|+.+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k---------v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK---------VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE---------EEEEEET--TEEEEEEEEE--SSHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce---------eEECcCC--CCCcEEEEEEECCChHHHHHHHHH
Confidence 4566666543 45689999999999887 4455553 36789999999763 445556653
No 186
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=31.95 E-value=41 Score=30.01 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=23.6
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC-CCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL-NVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~-~p~Gvv~V~f~~ 477 (487)
+.++||-|+.+-.+ +|-.+.-.--+.|++.+..|.++.-..++.. ...|++.|.|.-
T Consensus 8 PwmgIi~N~~~~~~--~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~ 65 (116)
T PF03468_consen 8 PWMGIIVNIPTEKD--DDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNK 65 (116)
T ss_dssp S-EEEEE----EE---TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--S
T ss_pred CCEEEEEcCccccC--CCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECC
Confidence 35899999966432 1221222233455666666888754444433 236888888753
No 187
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=30.43 E-value=93 Score=25.00 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhccCcceEEEEEec
Q 011382 441 SELEADVQEECVKIGPVDSVKVMK 464 (487)
Q Consensus 441 ~ei~EDVreEC~KfG~V~~V~V~~ 464 (487)
..|..+||+.++.+|+|.-+.|-.
T Consensus 5 e~i~~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 5 EEITAEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEcc
Confidence 468899999999999998888743
No 188
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=27.29 E-value=43 Score=36.42 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=32.8
Q ss_pred eEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCC----ceEEEEEEe
Q 011382 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVE----INCILIIFL 477 (487)
Q Consensus 420 ~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~----Gvv~V~f~~ 477 (487)
..|+++|+-. + . ....|+++|.+||.|++..|..+.+. .+++|.|..
T Consensus 289 ~~i~V~nlP~--d--a-------~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~ 339 (419)
T KOG0116|consen 289 LGIFVKNLPP--D--A-------TPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFEN 339 (419)
T ss_pred cceEeecCCC--C--C-------CHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEee
Confidence 3499999932 1 1 23458999999999999999876643 445665544
No 189
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=27.02 E-value=44 Score=20.00 Aligned_cols=11 Identities=27% Similarity=0.827 Sum_probs=8.6
Q ss_pred cceEEEcCCCc
Q 011382 24 EGWYILDENQQ 34 (487)
Q Consensus 24 ~~Wyy~~~ngq 34 (487)
..|||+..+|.
T Consensus 8 ~~wYy~~~~G~ 18 (19)
T PF01473_consen 8 GNWYYFDSDGY 18 (19)
T ss_dssp TEEEEETTTSB
T ss_pred CEEEEeCCCcc
Confidence 45999988874
No 190
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.92 E-value=1.2e+02 Score=34.30 Aligned_cols=70 Identities=23% Similarity=0.267 Sum_probs=55.3
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHhhcC----CccccCCCCCCCeEEEEecC----------CCCC---------------
Q 011382 287 VNTHVYVTGLPDD-VTVEEMVEVFSKC----GIIKEDPETKKPRIKIYVDK----------ETGM--------------- 336 (487)
Q Consensus 287 ~nt~VyV~nLP~d-iTeeeL~e~Fsk~----G~I~~d~~t~~p~ikl~~Dk----------~tG~--------------- 336 (487)
...+|-|.||.|+ +...+|.-+|+.| |.|. +|+||.-. -.|.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsil--------SV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~ 244 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSIL--------SVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESE 244 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCcee--------EEEechhhhhHHHhhhhcccCChhhhccccccCcccc
Confidence 4558999999997 7778999999865 6888 88888531 1222
Q ss_pred ---------------------cc-ceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 337 ---------------------KK-GDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 337 ---------------------~K-G~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
.+ =||.|+|.+.+.|.......||.+|.
T Consensus 245 sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfE 294 (650)
T KOG2318|consen 245 SDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFE 294 (650)
T ss_pred cchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceec
Confidence 11 26889999999999999999999996
No 191
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=26.23 E-value=1.4e+02 Score=27.91 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=32.4
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
..+|+++-.-. ...++..|...+..+|.+.+..||.|.-|++.. |..+|.|.-
T Consensus 27 DaTVvVsv~~~--~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~d 79 (146)
T PF08952_consen 27 DATVVVSVDSP--SEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRD 79 (146)
T ss_dssp T-EEEEEECS---SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESS
T ss_pred CceEEEEecCC--CccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECc
Confidence 34666655531 112244555678899999999999999998853 466666643
No 192
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=25.77 E-value=77 Score=29.57 Aligned_cols=46 Identities=9% Similarity=0.172 Sum_probs=32.9
Q ss_pred EEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEe-cCC---CCceEEEEEEe
Q 011382 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVM-KLN---VEINCILIIFL 477 (487)
Q Consensus 421 ~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~-~~~---p~Gvv~V~f~~ 477 (487)
+|++.++.. +-.++||.+-|..||+|.++.+- ++. -+|.+-|.+.+
T Consensus 74 Ii~VtgvHe-----------EatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet 123 (170)
T KOG0130|consen 74 IIFVTGVHE-----------EATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYET 123 (170)
T ss_pred EEEEeccCc-----------chhHHHHHHHHhhcccccceeeccccccccccceeeeehHh
Confidence 677777622 12578999999999999999984 332 36777777654
No 193
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=25.08 E-value=1.6e+02 Score=33.32 Aligned_cols=57 Identities=14% Similarity=0.299 Sum_probs=46.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhh--cCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFS--KCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD 359 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fs--k~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ld 359 (487)
-|-|.+.-||..+-+++++.+|+ .|-.+. .|.+-.+. -=||+|.+..+|+.|.+.|.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~i--------scefa~N~-------nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVI--------SCEFAHND-------NWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCce--------eeeeeecC-------ceEEEeecchhHHHHHHHHH
Confidence 35688899999999999999998 487777 67665541 24899999999999987664
No 194
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=20.74 E-value=1.3e+02 Score=25.62 Aligned_cols=51 Identities=16% Similarity=0.291 Sum_probs=33.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEe----cCCCCCccceEEEEeCC
Q 011382 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYV----DKETGMKKGDALVTYLK 347 (487)
Q Consensus 290 ~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~----Dk~tG~~KG~AfV~F~~ 347 (487)
..|+.|||..+-+.++...-..+.... |.+.|.. ....+.+.|++++.+..
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~-------~~v~i~~d~~~~~~~~~~~G~gi~l~ae 66 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYG-------PDVEIETDYRESDDSAFGPGSGISLVAE 66 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTC-------SEEEEEEEEE-CCCCGCSSEEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhC-------CCeEEEEecccCccCCCCCceEEEEEEE
Confidence 469999999999988766555443332 2455555 23567888888877654
Done!