Query 011382
Match_columns 487
No_of_seqs 472 out of 2405
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 06:59:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 99.8 2.9E-20 1E-24 171.2 15.4 141 286-477 11-155 (196)
2 3nmr_A Cugbp ELAV-like family 99.8 5.7E-20 2E-24 165.7 15.5 139 287-477 2-145 (175)
3 4f02_A Polyadenylate-binding p 99.8 2.8E-20 9.6E-25 176.4 14.1 137 287-477 14-152 (213)
4 1fxl_A Paraneoplastic encephal 99.8 7.2E-20 2.5E-24 163.5 15.7 134 288-477 2-139 (167)
5 1b7f_A Protein (SXL-lethal pro 99.8 6.5E-20 2.2E-24 164.6 14.2 134 288-477 3-140 (168)
6 2qfj_A FBP-interacting repress 99.8 9.8E-20 3.4E-24 170.2 14.2 146 287-477 27-176 (216)
7 3md3_A Nuclear and cytoplasmic 99.8 2.3E-19 7.7E-24 160.1 13.5 134 289-477 1-138 (166)
8 2cjk_A Nuclear polyadenylated 99.8 2.3E-19 7.7E-24 161.2 11.5 133 287-477 2-138 (167)
9 3pgw_A U1-A; protein-RNA compl 99.8 1.3E-18 4.6E-23 170.2 14.7 79 286-378 7-89 (282)
10 4fxv_A ELAV-like protein 1; RN 99.8 9.6E-19 3.3E-23 148.0 10.6 81 287-378 18-98 (99)
11 3smz_A Protein raver-1, ribonu 99.7 1.8E-17 6.2E-22 162.4 15.8 139 287-477 94-235 (284)
12 2la6_A RNA-binding protein FUS 99.7 1E-17 3.5E-22 140.2 11.7 89 286-377 11-99 (99)
13 3tyt_A Heterogeneous nuclear r 99.7 1.3E-17 4.3E-22 158.7 12.8 158 287-477 3-174 (205)
14 1fje_B Nucleolin RBD12, protei 99.7 5.4E-18 1.8E-22 153.8 8.9 135 286-477 11-145 (175)
15 2ghp_A U4/U6 snRNA-associated 99.7 2.9E-17 9.9E-22 161.5 14.3 142 287-478 116-264 (292)
16 3s8s_A Histone-lysine N-methyl 99.7 2.3E-17 7.7E-22 142.4 10.4 79 288-377 6-84 (110)
17 2cpe_A RNA-binding protein EWS 99.7 4E-17 1.4E-21 139.6 11.6 92 286-380 13-104 (113)
18 2adc_A Polypyrimidine tract-bi 99.7 1.2E-16 4.1E-21 153.0 15.7 157 286-478 32-199 (229)
19 1qm9_A Polypyrimidine tract-bi 99.7 4.6E-17 1.6E-21 151.1 12.3 161 288-477 3-167 (198)
20 2yh0_A Splicing factor U2AF 65 99.7 1.3E-17 4.4E-22 153.7 8.5 160 287-478 3-166 (198)
21 2lxi_A RNA-binding protein 10; 99.7 1E-17 3.6E-22 139.3 6.8 82 288-380 1-84 (91)
22 3p5t_L Cleavage and polyadenyl 99.7 2.5E-17 8.6E-22 135.8 7.6 79 289-378 2-82 (90)
23 3sde_A Paraspeckle component 1 99.7 2.1E-16 7.3E-21 154.3 15.3 124 286-477 20-146 (261)
24 2g4b_A Splicing factor U2AF 65 99.7 1.6E-16 5.6E-21 143.1 13.2 139 286-477 2-145 (172)
25 3md1_A Nuclear and cytoplasmic 99.7 1.2E-16 4.2E-21 128.6 10.6 80 289-379 2-81 (83)
26 2lkz_A RNA-binding protein 5; 99.7 4.1E-17 1.4E-21 137.7 8.0 82 287-377 8-93 (95)
27 3ns6_A Eukaryotic translation 99.7 2.3E-17 7.9E-22 139.2 6.5 80 287-377 5-91 (100)
28 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.1E-16 3.9E-21 130.0 10.1 81 287-378 5-85 (87)
29 3mdf_A Peptidyl-prolyl CIS-tra 99.7 9.9E-17 3.4E-21 129.7 9.2 81 286-377 5-85 (85)
30 2dnz_A Probable RNA-binding pr 99.7 1.8E-16 6.1E-21 131.1 10.8 83 287-380 4-86 (95)
31 1whw_A Hypothetical protein ri 99.7 1.7E-16 5.8E-21 132.3 10.1 83 286-379 6-88 (99)
32 2cqc_A Arginine/serine-rich sp 99.7 2.8E-16 9.7E-21 129.6 11.1 81 286-377 13-93 (95)
33 1x5t_A Splicing factor 3B subu 99.7 1.9E-16 6.4E-21 131.2 9.8 82 287-379 4-86 (96)
34 2ghp_A U4/U6 snRNA-associated 99.7 2.4E-16 8.2E-21 155.0 12.2 126 286-477 39-168 (292)
35 2dnh_A Bruno-like 5, RNA bindi 99.7 4.3E-16 1.5E-20 131.3 12.1 84 287-379 14-97 (105)
36 1p27_B RNA-binding protein 8A; 99.7 2.4E-16 8.1E-21 133.1 10.4 82 286-378 21-102 (106)
37 2e5h_A Zinc finger CCHC-type a 99.7 1.9E-16 6.5E-21 130.7 9.6 81 286-377 14-94 (94)
38 4f25_A Polyadenylate-binding p 99.7 1.7E-16 5.8E-21 137.1 9.7 78 288-378 5-82 (115)
39 1x5u_A Splicing factor 3B subu 99.7 2.1E-16 7.3E-21 133.1 10.0 83 286-379 13-95 (105)
40 2cq0_A Eukaryotic translation 99.7 2.3E-16 7.9E-21 132.7 10.0 84 286-380 13-96 (103)
41 2x1f_A MRNA 3'-END-processing 99.7 2E-16 7E-21 131.5 9.5 81 288-379 2-82 (96)
42 3smz_A Protein raver-1, ribonu 99.7 5.7E-16 2E-20 151.7 14.2 122 287-477 21-146 (284)
43 2do4_A Squamous cell carcinoma 99.7 4.9E-16 1.7E-20 130.0 11.7 81 287-379 16-96 (100)
44 2dgs_A DAZ-associated protein 99.7 3.2E-16 1.1E-20 130.9 10.5 82 286-379 8-89 (99)
45 2mss_A Protein (musashi1); RNA 99.7 1.3E-16 4.3E-21 126.5 7.6 75 290-376 1-75 (75)
46 1x5s_A Cold-inducible RNA-bind 99.7 2.5E-16 8.6E-21 132.0 9.6 83 286-379 10-92 (102)
47 3ucg_A Polyadenylate-binding p 99.7 3.2E-16 1.1E-20 127.8 10.0 80 288-379 6-85 (89)
48 3s7r_A Heterogeneous nuclear r 99.7 4.3E-16 1.5E-20 126.9 10.7 79 286-376 9-87 (87)
49 2jrs_A RNA-binding protein 39; 99.7 3.6E-16 1.2E-20 133.9 10.7 82 286-378 24-105 (108)
50 2dgo_A Cytotoxic granule-assoc 99.7 4.3E-16 1.5E-20 133.5 11.0 83 286-379 13-95 (115)
51 2dnm_A SRP46 splicing factor; 99.7 2E-16 7E-21 133.0 8.7 83 286-379 11-93 (103)
52 1s79_A Lupus LA protein; RRM, 99.7 1.2E-16 4.2E-21 136.3 7.5 78 287-377 10-87 (103)
53 2cpz_A CUG triplet repeat RNA- 99.7 5.2E-16 1.8E-20 133.2 11.4 82 287-379 24-105 (115)
54 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2E-16 6.9E-21 125.6 8.1 76 289-376 1-76 (77)
55 3n9u_C Cleavage and polyadenyl 99.7 3.1E-16 1.1E-20 143.5 10.3 81 287-378 54-136 (156)
56 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.5E-16 8.7E-21 132.0 8.9 83 287-380 11-93 (102)
57 2dgp_A Bruno-like 4, RNA bindi 99.6 4.4E-16 1.5E-20 131.4 10.0 87 286-380 11-97 (106)
58 2cpf_A RNA binding motif prote 99.6 3.3E-16 1.1E-20 130.3 9.1 84 286-380 3-89 (98)
59 1p1t_A Cleavage stimulation fa 99.6 4.4E-16 1.5E-20 130.8 9.6 81 287-378 7-87 (104)
60 2div_A TRNA selenocysteine ass 99.6 6E-16 2E-20 129.0 10.1 86 286-379 7-94 (99)
61 1x4h_A RNA-binding protein 28; 99.6 4.5E-16 1.5E-20 132.2 9.5 83 286-379 13-101 (111)
62 2cqp_A RNA-binding protein 12; 99.6 7.3E-16 2.5E-20 128.3 10.6 82 286-378 13-94 (98)
63 2fy1_A RNA-binding motif prote 99.6 7.6E-16 2.6E-20 133.5 11.0 82 286-379 5-86 (116)
64 2khc_A Testis-specific RNP-typ 99.6 4.9E-16 1.7E-20 133.7 9.6 80 286-376 38-117 (118)
65 3ulh_A THO complex subunit 4; 99.6 7.5E-16 2.6E-20 130.2 10.4 80 286-377 27-106 (107)
66 2ek1_A RNA-binding protein 12; 99.6 4.5E-16 1.5E-20 128.6 8.8 79 288-377 15-93 (95)
67 2cph_A RNA binding motif prote 99.6 8.3E-16 2.8E-20 129.7 10.6 83 286-379 13-97 (107)
68 4a8x_A RNA-binding protein wit 99.6 3.8E-16 1.3E-20 126.9 8.0 81 287-378 3-84 (88)
69 2ywk_A Putative RNA-binding pr 99.6 7.7E-16 2.6E-20 127.2 9.8 80 286-377 14-93 (95)
70 1oo0_B CG8781-PA, drosophila Y 99.6 6E-16 2.1E-20 131.6 9.2 83 286-379 24-106 (110)
71 1u6f_A Tcubp1, RNA-binding pro 99.6 1E-15 3.4E-20 135.5 11.0 83 286-379 40-122 (139)
72 2d9p_A Polyadenylate-binding p 99.6 7.8E-16 2.7E-20 129.4 9.6 81 287-380 14-94 (103)
73 2m2b_A RNA-binding protein 10; 99.6 2.3E-16 7.9E-21 139.1 6.2 83 287-379 22-108 (131)
74 1x4e_A RNA binding motif, sing 99.6 2.3E-16 8E-21 127.9 5.7 79 286-375 3-81 (85)
75 3ex7_B RNA-binding protein 8A; 99.6 8.9E-16 3.1E-20 133.6 9.7 83 286-379 20-102 (126)
76 2dng_A Eukaryotic translation 99.6 2.1E-15 7.3E-20 126.9 11.6 81 286-379 13-93 (103)
77 2cqd_A RNA-binding region cont 99.6 9.9E-16 3.4E-20 131.6 9.7 82 286-379 15-96 (116)
78 2dhg_A TRNA selenocysteine ass 99.6 7.4E-16 2.5E-20 129.6 8.6 81 286-378 7-89 (104)
79 2ki2_A SS-DNA binding protein 99.6 2.1E-16 7.2E-21 129.5 5.1 78 289-378 2-79 (90)
80 2krb_A Eukaryotic translation 99.6 4E-16 1.4E-20 126.0 6.6 69 288-367 1-75 (81)
81 1wi8_A EIF-4B, eukaryotic tran 99.6 1.6E-15 5.6E-20 127.8 10.5 81 287-380 14-95 (104)
82 2kt5_A RNA and export factor-b 99.6 1.7E-15 5.7E-20 131.9 10.8 81 286-378 33-113 (124)
83 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3.8E-16 1.3E-20 131.3 6.1 80 286-378 17-97 (100)
84 2cq4_A RNA binding motif prote 99.6 8.8E-16 3E-20 131.5 8.3 80 287-378 24-103 (114)
85 2kxn_B Transformer-2 protein h 99.6 1.2E-15 4.1E-20 135.0 9.4 82 286-378 44-125 (129)
86 2do0_A HnRNP M, heterogeneous 99.6 2.6E-15 8.9E-20 128.2 11.1 82 286-379 13-94 (114)
87 2cpy_A RNA-binding protein 12; 99.6 1.4E-15 4.7E-20 131.0 8.9 78 287-377 14-92 (114)
88 1x4b_A Heterogeneous nuclear r 99.6 2.4E-15 8.1E-20 129.3 10.2 82 287-380 26-107 (116)
89 2dgv_A HnRNP M, heterogeneous 99.6 1.8E-15 6.1E-20 124.3 9.0 81 286-379 6-86 (92)
90 1wel_A RNA-binding protein 12; 99.6 1.7E-15 5.7E-20 132.2 9.4 80 286-377 23-102 (124)
91 1h2v_Z 20 kDa nuclear CAP bind 99.6 3.1E-15 1E-19 135.2 11.1 82 286-378 37-118 (156)
92 2dh8_A DAZ-associated protein 99.6 1.2E-15 4.3E-20 128.6 7.7 82 286-379 14-95 (105)
93 2kn4_A Immunoglobulin G-bindin 99.6 1.5E-15 5.2E-20 136.9 8.8 83 286-379 68-150 (158)
94 2dis_A Unnamed protein product 99.6 1.7E-15 5.7E-20 128.5 8.3 82 287-379 7-92 (109)
95 2dgw_A Probable RNA-binding pr 99.6 5.6E-15 1.9E-19 121.4 11.2 80 286-379 8-87 (91)
96 2jwn_A Embryonic polyadenylate 99.6 2.3E-15 8E-20 130.6 9.4 80 288-379 36-115 (124)
97 3q2s_C Cleavage and polyadenyl 99.6 1.7E-15 5.9E-20 146.6 9.4 81 287-378 67-149 (229)
98 2db1_A Heterogeneous nuclear r 99.6 3.1E-15 1E-19 130.0 10.1 79 286-377 15-96 (118)
99 1iqt_A AUF1, heterogeneous nuc 99.6 9.9E-16 3.4E-20 121.2 6.4 75 290-376 1-75 (75)
100 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.2E-15 7.4E-20 132.6 9.2 80 286-376 61-140 (140)
101 2rs2_A Musashi-1, RNA-binding 99.6 2.5E-15 8.4E-20 128.8 9.3 80 287-378 24-103 (109)
102 2nlw_A Eukaryotic translation 99.6 1.7E-15 5.9E-20 128.5 8.2 79 287-377 14-98 (105)
103 2hgl_A HNRPF protein, heteroge 99.6 2.7E-15 9.1E-20 134.7 9.8 79 286-377 42-123 (136)
104 2dgx_A KIAA0430 protein; RRM d 99.6 2.3E-15 7.8E-20 125.7 8.8 80 286-379 7-90 (96)
105 2lcw_A RNA-binding protein FUS 99.4 8.7E-17 3E-21 138.5 0.0 90 287-379 6-95 (116)
106 2j8a_A Histone-lysine N-methyl 99.6 5.4E-15 1.9E-19 132.0 11.3 78 289-377 3-94 (136)
107 1wez_A HnRNP H', FTP-3, hetero 99.6 4.6E-15 1.6E-19 126.0 10.3 79 286-378 13-91 (102)
108 1x5o_A RNA binding motif, sing 99.6 6.9E-15 2.4E-19 125.8 11.3 81 287-377 24-110 (114)
109 3lqv_A PRE-mRNA branch site pr 99.6 7.7E-15 2.6E-19 125.7 11.6 79 286-378 6-84 (115)
110 1wg5_A Heterogeneous nuclear r 99.6 3E-15 1E-19 126.8 8.9 79 286-377 13-92 (104)
111 2cq3_A RNA-binding protein 9; 99.6 6.9E-15 2.4E-19 123.6 10.9 81 286-379 13-93 (103)
112 2cqg_A TDP-43, TAR DNA-binding 99.6 6.8E-15 2.3E-19 123.6 10.7 80 287-379 14-93 (103)
113 2cpi_A CCR4-NOT transcription 99.6 3.3E-15 1.1E-19 128.0 8.9 84 286-380 13-102 (111)
114 2cqi_A Nucleolysin TIAR; RNA r 99.6 6E-15 2.1E-19 123.9 10.0 81 286-379 13-93 (103)
115 2lmi_A GRSF-1, G-rich sequence 99.6 2.9E-15 9.9E-20 127.6 8.1 79 286-377 9-90 (107)
116 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.7E-15 1.6E-19 135.7 10.1 83 286-379 70-152 (165)
117 2lea_A Serine/arginine-rich sp 99.6 2E-15 6.9E-20 134.5 7.2 83 286-379 45-127 (135)
118 2cpx_A Hypothetical protein FL 99.6 3.6E-15 1.2E-19 127.5 8.5 83 286-379 23-105 (115)
119 2err_A Ataxin-2-binding protei 99.6 5.9E-15 2E-19 126.2 9.4 79 287-378 28-106 (109)
120 1fj7_A Nucleolin RBD1, protein 99.6 9.6E-16 3.3E-20 128.4 3.3 79 287-378 16-94 (101)
121 1x4a_A Splicing factor, argini 99.6 1.5E-14 5E-19 123.0 10.7 81 286-380 20-100 (109)
122 1l3k_A Heterogeneous nuclear r 99.5 4.2E-15 1.4E-19 136.7 6.5 81 287-379 103-183 (196)
123 2fc8_A NCL protein; structure 99.5 2.7E-14 9.3E-19 119.5 10.9 81 286-380 13-93 (102)
124 1fxl_A Paraneoplastic encephal 99.5 1.9E-14 6.3E-19 128.3 10.4 81 287-376 87-167 (167)
125 2xs2_A Deleted in azoospermia- 99.5 6.9E-15 2.4E-19 123.4 7.0 78 287-378 8-85 (102)
126 2a3j_A U1 small nuclear ribonu 99.5 1.3E-14 4.4E-19 128.7 9.0 79 286-378 27-109 (127)
127 2dha_A FLJ20171 protein; RRM d 99.5 1.2E-14 4.1E-19 128.3 8.7 78 287-377 22-103 (123)
128 2e5j_A Methenyltetrahydrofolat 99.5 3.7E-14 1.3E-18 118.2 11.1 77 286-378 17-93 (97)
129 1x4c_A Splicing factor, argini 99.5 2.6E-14 8.8E-19 121.7 10.3 78 286-379 13-93 (108)
130 2dnn_A RNA-binding protein 12; 99.5 1.9E-14 6.4E-19 124.4 9.3 77 287-377 15-91 (109)
131 2wbr_A GW182, gawky, LD47780P; 99.5 1.5E-14 5.2E-19 121.0 8.1 73 288-377 7-79 (89)
132 1sjq_A Polypyrimidine tract-bi 99.5 1.1E-14 3.8E-19 125.5 7.5 78 286-380 14-93 (105)
133 2hvz_A Splicing factor, argini 99.5 1.4E-14 4.8E-19 121.3 7.8 76 289-380 1-76 (101)
134 2fc9_A NCL protein; structure 99.5 1.9E-14 6.6E-19 120.4 8.5 80 286-380 13-92 (101)
135 2f3j_A RNA and export factor b 99.5 2.3E-14 8E-19 133.5 9.9 81 286-378 86-166 (177)
136 2jvr_A Nucleolar protein 3; RN 99.5 2.4E-14 8E-19 124.3 9.2 77 287-378 27-104 (111)
137 2ad9_A Polypyrimidine tract-bi 99.5 3.3E-14 1.1E-18 125.1 10.3 77 286-379 29-107 (119)
138 1nu4_A U1A RNA binding domain; 99.5 1.3E-14 4.5E-19 120.2 6.9 80 286-379 6-89 (97)
139 2dnq_A RNA-binding protein 4B; 99.5 4.6E-14 1.6E-18 115.8 10.1 76 286-380 6-81 (90)
140 1b7f_A Protein (SXL-lethal pro 99.5 4.2E-14 1.4E-18 126.6 10.5 81 287-376 88-168 (168)
141 3nmr_A Cugbp ELAV-like family 99.5 3.7E-14 1.3E-18 127.5 10.1 82 287-377 94-175 (175)
142 3md3_A Nuclear and cytoplasmic 99.5 5E-14 1.7E-18 125.3 10.8 81 286-377 85-165 (166)
143 2cq1_A PTB-like protein L; RRM 99.5 5.7E-14 1.9E-18 119.7 10.6 77 286-379 13-91 (101)
144 3egn_A RNA-binding protein 40; 99.5 8.8E-15 3E-19 130.3 5.7 82 286-379 43-130 (143)
145 2la4_A Nuclear and cytoplasmic 99.5 3.2E-14 1.1E-18 119.1 8.6 74 287-377 26-99 (101)
146 1why_A Hypothetical protein ri 99.5 6.3E-14 2.2E-18 116.6 10.3 79 286-379 15-93 (97)
147 3r27_A HnRNP L, heterogeneous 99.5 4.1E-14 1.4E-18 121.0 9.1 76 286-378 19-96 (100)
148 2ytc_A PRE-mRNA-splicing facto 99.5 6E-14 2.1E-18 113.4 9.6 75 286-377 10-85 (85)
149 2cpj_A Non-POU domain-containi 99.5 8E-14 2.7E-18 116.4 10.4 77 286-379 13-89 (99)
150 2xnq_A Nuclear polyadenylated 99.5 7E-14 2.4E-18 117.2 10.0 74 286-378 20-94 (97)
151 2g4b_A Splicing factor U2AF 65 99.5 4.2E-14 1.4E-18 127.3 9.3 78 288-376 94-171 (172)
152 1whx_A Hypothetical protein ri 99.5 2.7E-14 9.4E-19 122.7 7.6 75 287-378 9-83 (111)
153 1x4g_A Nucleolysin TIAR; struc 99.5 5.1E-14 1.7E-18 119.8 9.1 76 287-379 24-99 (109)
154 2cjk_A Nuclear polyadenylated 99.5 2.9E-14 9.9E-19 127.7 8.0 79 288-378 87-165 (167)
155 1wex_A Hypothetical protein (r 99.5 6.5E-14 2.2E-18 119.9 9.8 76 286-378 13-90 (104)
156 2kvi_A Nuclear polyadenylated 99.5 8.2E-14 2.8E-18 116.0 10.2 74 286-378 8-82 (96)
157 1fjc_A Nucleolin RBD2, protein 99.5 3.8E-14 1.3E-18 117.3 7.8 76 287-378 15-90 (96)
158 2qfj_A FBP-interacting repress 99.5 8E-14 2.7E-18 129.9 10.7 82 287-379 124-205 (216)
159 3pgw_S U1-70K; protein-RNA com 99.5 6.6E-14 2.3E-18 147.8 11.0 82 286-378 100-181 (437)
160 1x4d_A Matrin 3; structural ge 99.5 4.2E-14 1.4E-18 121.0 7.3 75 287-378 14-91 (102)
161 2dgt_A RNA-binding protein 30; 99.5 1.5E-13 5E-18 113.3 10.1 75 286-379 8-82 (92)
162 2i2y_A Fusion protein consists 99.5 9.5E-14 3.2E-18 124.6 9.4 77 286-378 71-147 (150)
163 2jvo_A Nucleolar protein 3; nu 99.5 1.3E-13 4.4E-18 118.1 9.7 75 286-379 29-103 (108)
164 2hgn_A Heterogeneous nuclear r 99.5 3.1E-14 1.1E-18 128.2 5.6 78 287-378 45-122 (139)
165 2yh0_A Splicing factor U2AF 65 99.5 1.4E-13 4.6E-18 126.7 9.9 83 286-379 112-194 (198)
166 2hgm_A HNRPF protein, heteroge 99.5 7.8E-14 2.7E-18 123.8 7.8 80 286-377 40-119 (126)
167 2dnp_A RNA-binding protein 14; 99.5 1.3E-13 4.4E-18 113.2 8.5 75 286-379 7-81 (90)
168 2cqh_A IGF-II mRNA-binding pro 99.5 1.2E-13 4.1E-18 113.9 8.3 76 286-379 6-83 (93)
169 2dgu_A Heterogeneous nuclear r 99.5 1.5E-13 5E-18 115.8 8.7 75 286-379 9-83 (103)
170 1x4f_A Matrin 3; structural ge 99.5 9.7E-14 3.3E-18 120.9 7.5 75 287-378 24-101 (112)
171 1wf1_A RNA-binding protein RAL 99.4 2.7E-13 9.3E-18 115.4 10.1 73 287-378 26-99 (110)
172 2e44_A Insulin-like growth fac 99.4 9.1E-14 3.1E-18 115.0 6.9 78 287-379 14-92 (96)
173 1wg1_A KIAA1579 protein, homol 99.4 2.2E-13 7.6E-18 111.6 9.0 74 287-378 4-77 (88)
174 3zzy_A Polypyrimidine tract-bi 99.4 2.6E-13 8.9E-18 121.2 10.0 78 288-379 28-106 (130)
175 3d2w_A TAR DNA-binding protein 99.4 1.3E-13 4.5E-18 114.0 7.5 74 287-378 10-83 (89)
176 3beg_B Splicing factor, argini 99.4 9.8E-14 3.3E-18 119.9 7.0 75 287-377 15-92 (115)
177 2cpd_A Apobec-1 stimulating pr 99.4 4.7E-13 1.6E-17 111.7 10.8 76 286-380 13-90 (99)
178 2dnl_A Cytoplasmic polyadenyla 99.4 1.8E-13 6.1E-18 117.7 8.3 64 286-358 6-72 (114)
179 2e5g_A U6 snRNA-specific termi 99.4 2.2E-13 7.6E-18 112.8 8.4 74 287-377 7-80 (94)
180 4f02_A Polyadenylate-binding p 99.4 2.4E-13 8E-18 128.7 9.7 78 288-378 103-180 (213)
181 1sjr_A Polypyrimidine tract-bi 99.4 3.6E-13 1.2E-17 124.8 9.9 80 287-379 45-124 (164)
182 2e5i_A Heterogeneous nuclear r 99.4 6.9E-13 2.4E-17 117.4 10.2 77 288-379 25-102 (124)
183 1x5p_A Negative elongation fac 99.4 7.8E-13 2.7E-17 110.1 9.8 75 286-379 13-87 (97)
184 2hzc_A Splicing factor U2AF 65 99.4 3.2E-13 1.1E-17 109.4 7.2 72 286-375 4-86 (87)
185 2voo_A Lupus LA protein; RNA-b 99.4 4.9E-13 1.7E-17 126.1 8.6 77 288-377 109-185 (193)
186 1wf0_A TDP-43, TAR DNA-binding 99.4 4.1E-13 1.4E-17 109.7 5.8 76 287-380 4-79 (88)
187 2diu_A KIAA0430 protein; struc 99.4 1.4E-12 4.9E-17 110.4 8.5 71 288-379 9-84 (96)
188 2cq2_A Hypothetical protein LO 99.4 8.3E-13 2.8E-17 115.4 7.2 77 287-377 24-104 (114)
189 3tyt_A Heterogeneous nuclear r 99.3 1.2E-12 4.2E-17 124.3 7.7 80 287-376 122-204 (205)
190 2bz2_A Negative elongation fac 99.3 4E-12 1.4E-16 111.2 10.3 75 286-379 37-111 (121)
191 1fje_B Nucleolin RBD12, protei 99.3 2E-12 6.8E-17 117.0 8.7 76 287-378 98-173 (175)
192 2pe8_A Splicing factor 45; RRM 99.3 4.6E-12 1.6E-16 108.5 10.1 80 287-377 7-92 (105)
193 3s6e_A RNA-binding protein 39; 99.3 2.5E-12 8.4E-17 112.1 6.6 60 417-477 5-64 (114)
194 3sde_A Paraspeckle component 1 99.3 7.8E-12 2.7E-16 121.9 9.6 83 288-379 96-179 (261)
195 3pgw_A U1-A; protein-RNA compl 99.3 1.4E-11 4.7E-16 120.4 10.8 77 286-377 205-281 (282)
196 3u1l_A PRE-mRNA-splicing facto 99.2 1E-11 3.4E-16 121.6 8.0 76 286-378 132-228 (240)
197 3v4m_A Splicing factor U2AF 65 99.2 1.4E-11 4.9E-16 105.3 7.2 60 417-477 3-68 (105)
198 1qm9_A Polypyrimidine tract-bi 99.2 6.9E-11 2.4E-15 109.3 9.2 76 287-377 119-195 (198)
199 1jmt_A Splicing factor U2AF 35 99.1 9.7E-12 3.3E-16 106.2 2.7 73 292-376 19-103 (104)
200 2dit_A HIV TAT specific factor 99.1 2.1E-10 7.1E-15 98.3 10.3 77 287-378 14-101 (112)
201 2adc_A Polypyrimidine tract-bi 99.1 1.2E-10 4.2E-15 111.1 9.4 77 287-378 150-227 (229)
202 3v4m_A Splicing factor U2AF 65 99.1 1E-10 3.5E-15 100.0 7.7 79 288-377 5-95 (105)
203 3ue2_A Poly(U)-binding-splicin 99.1 1.3E-10 4.5E-15 101.7 8.4 79 288-377 20-107 (118)
204 2dit_A HIV TAT specific factor 99.1 1.5E-10 5.1E-15 99.2 7.1 62 416-477 12-73 (112)
205 3tht_A Alkylated DNA repair pr 99.0 2.8E-10 9.7E-15 116.8 8.1 77 287-377 17-97 (345)
206 3ue2_A Poly(U)-binding-splicin 99.0 2.1E-10 7.2E-15 100.4 5.7 54 418-477 19-80 (118)
207 2pe8_A Splicing factor 45; RRM 98.9 1.6E-09 5.5E-14 92.6 6.0 55 417-477 6-65 (105)
208 2d9o_A DNAJ (HSP40) homolog, s 98.9 6.8E-09 2.3E-13 88.3 9.7 64 298-379 27-90 (100)
209 1owx_A Lupus LA protein, SS-B, 98.7 2E-08 6.8E-13 88.6 8.0 78 283-377 13-94 (121)
210 3s6e_A RNA-binding protein 39; 98.7 1.7E-08 6E-13 87.7 6.7 75 288-377 7-91 (114)
211 1wh2_A Hypothetical protein AT 98.6 2.2E-08 7.6E-13 81.7 4.8 62 20-82 14-75 (78)
212 1jmt_A Splicing factor U2AF 35 98.6 3.3E-08 1.1E-12 84.1 5.7 59 419-477 1-77 (104)
213 2kn4_A Immunoglobulin G-bindin 98.6 1.7E-07 5.7E-12 84.0 9.2 116 325-477 2-121 (158)
214 2dnr_A Synaptojanin-1; RRM dom 98.5 2.2E-07 7.5E-12 77.9 7.1 69 289-377 8-84 (91)
215 2i2y_A Fusion protein consists 98.4 5.1E-07 1.7E-11 80.5 8.7 116 326-477 3-119 (150)
216 3dxb_A Thioredoxin N-terminall 98.4 6.2E-07 2.1E-11 84.9 7.9 68 299-377 140-211 (222)
217 1ufw_A Synaptojanin 2; RNP dom 98.3 6.9E-07 2.3E-11 75.4 4.7 67 289-375 16-91 (95)
218 3dxb_A Thioredoxin N-terminall 98.1 4.5E-06 1.5E-10 79.0 6.5 54 418-477 123-184 (222)
219 3pgw_S U1-70K; protein-RNA com 98.0 3.4E-06 1.1E-10 88.9 5.0 66 401-477 82-153 (437)
220 3k3v_A Protein SMY2; GYF domai 97.6 1.8E-05 6.1E-10 67.3 2.2 55 22-76 14-76 (100)
221 2l9w_A U4/U6 snRNA-associated- 97.3 0.00059 2E-08 59.1 7.2 72 288-376 21-97 (117)
222 2krb_A Eukaryotic translation 97.1 0.00047 1.6E-08 54.6 4.5 53 420-477 2-56 (81)
223 2cq1_A PTB-like protein L; RRM 97.0 0.0016 5.6E-08 54.7 7.2 48 417-477 13-60 (101)
224 3r27_A HnRNP L, heterogeneous 97.0 0.001 3.6E-08 56.3 5.9 49 416-477 18-66 (100)
225 1wex_A Hypothetical protein (r 96.9 0.0012 4.2E-08 55.7 6.1 48 417-477 13-60 (104)
226 2lea_A Serine/arginine-rich sp 96.9 0.00048 1.7E-08 60.6 3.0 89 340-477 6-98 (135)
227 3d2w_A TAR DNA-binding protein 96.9 0.0015 5E-08 53.2 5.7 50 417-478 9-58 (89)
228 3s7r_A Heterogeneous nuclear r 96.7 0.0011 3.9E-08 52.8 4.1 50 418-478 10-63 (87)
229 1sjq_A Polypyrimidine tract-bi 96.7 0.0018 6.1E-08 55.3 5.5 47 418-477 15-61 (105)
230 2a3j_A U1 small nuclear ribonu 96.7 0.0022 7.5E-08 56.2 6.0 54 417-477 27-81 (127)
231 2ad9_A Polypyrimidine tract-bi 96.7 0.00096 3.3E-08 58.2 3.6 48 417-477 29-76 (119)
232 1uw4_A UPF3X; nonsense mediate 96.7 0.0079 2.7E-07 50.2 8.9 83 289-379 2-88 (91)
233 1x4d_A Matrin 3; structural ge 96.6 0.003 1E-07 53.4 6.2 48 417-477 13-61 (102)
234 1sjr_A Polypyrimidine tract-bi 96.6 0.0018 6.2E-08 59.7 5.1 48 420-478 47-94 (164)
235 2nlw_A Eukaryotic translation 96.6 0.0017 5.7E-08 54.2 4.3 57 418-479 14-72 (105)
236 2lxi_A RNA-binding protein 10; 96.6 0.00038 1.3E-08 56.9 0.2 48 419-477 1-53 (91)
237 2e5h_A Zinc finger CCHC-type a 96.6 0.0024 8.3E-08 51.5 5.0 51 417-478 14-68 (94)
238 2dgp_A Bruno-like 4, RNA bindi 96.5 0.0039 1.3E-07 51.5 6.0 50 417-477 11-64 (106)
239 4fxv_A ELAV-like protein 1; RN 96.5 0.0026 8.8E-08 52.9 4.7 48 419-477 19-70 (99)
240 1whw_A Hypothetical protein ri 96.5 0.0043 1.5E-07 50.6 5.9 49 418-477 7-59 (99)
241 3s8s_A Histone-lysine N-methyl 96.5 0.0045 1.6E-07 52.5 6.2 49 418-477 5-57 (110)
242 1wf0_A TDP-43, TAR DNA-binding 96.4 0.0022 7.4E-08 51.4 3.9 49 418-478 4-52 (88)
243 4a8x_A RNA-binding protein wit 96.4 0.003 1E-07 50.1 4.6 48 419-477 4-56 (88)
244 2dnm_A SRP46 splicing factor; 96.4 0.0045 1.5E-07 50.9 5.8 50 417-477 11-64 (103)
245 2dnz_A Probable RNA-binding pr 96.4 0.0058 2E-07 49.3 6.3 49 418-477 4-56 (95)
246 2khc_A Testis-specific RNP-typ 96.4 0.0059 2E-07 51.5 6.5 50 418-478 39-92 (118)
247 1s79_A Lupus LA protein; RRM, 96.3 0.0035 1.2E-07 52.6 4.8 49 418-477 10-61 (103)
248 3mdf_A Peptidyl-prolyl CIS-tra 96.3 0.004 1.4E-07 49.1 4.9 49 418-477 6-58 (85)
249 2cq3_A RNA-binding protein 9; 96.3 0.008 2.7E-07 49.4 6.8 50 417-477 13-64 (103)
250 1x4e_A RNA binding motif, sing 96.3 0.0064 2.2E-07 48.1 6.0 50 418-478 4-57 (85)
251 1rk8_A CG8781-PA, CG8781-PA pr 96.3 0.0043 1.5E-07 55.9 5.5 50 417-477 70-123 (165)
252 2x1f_A MRNA 3'-END-processing 96.3 0.0059 2E-07 49.6 5.8 48 419-477 2-53 (96)
253 2dgs_A DAZ-associated protein 96.3 0.01 3.5E-07 48.4 7.3 49 418-477 9-61 (99)
254 1x4h_A RNA-binding protein 28; 96.3 0.0045 1.5E-07 51.4 5.0 49 418-477 14-66 (111)
255 2dgv_A HnRNP M, heterogeneous 96.3 0.0056 1.9E-07 49.1 5.4 50 417-477 6-57 (92)
256 1x4f_A Matrin 3; structural ge 96.2 0.0035 1.2E-07 54.0 4.4 48 417-477 23-71 (112)
257 2do4_A Squamous cell carcinoma 96.2 0.0035 1.2E-07 51.3 4.2 49 418-477 16-67 (100)
258 3bs9_A Nucleolysin TIA-1 isofo 96.2 0.005 1.7E-07 48.8 5.0 49 418-477 5-57 (87)
259 2dhg_A TRNA selenocysteine ass 96.2 0.0049 1.7E-07 50.7 4.9 50 418-478 8-61 (104)
260 1x4a_A Splicing factor, argini 96.2 0.0057 2E-07 50.9 5.4 49 418-477 21-70 (109)
261 2cqd_A RNA-binding region cont 96.2 0.0077 2.6E-07 50.7 6.2 50 417-477 15-68 (116)
262 3lqv_A PRE-mRNA branch site pr 96.2 0.0067 2.3E-07 50.9 5.8 49 418-477 7-56 (115)
263 3ns6_A Eukaryotic translation 96.2 0.009 3.1E-07 49.3 6.3 54 419-477 6-63 (100)
264 2cq0_A Eukaryotic translation 96.1 0.0056 1.9E-07 50.3 5.0 51 417-478 13-67 (103)
265 2cpf_A RNA binding motif prote 96.1 0.0037 1.3E-07 50.9 3.8 49 418-477 4-59 (98)
266 2cph_A RNA binding motif prote 96.1 0.0067 2.3E-07 50.0 5.3 50 417-477 13-67 (107)
267 2d9p_A Polyadenylate-binding p 96.1 0.0059 2E-07 50.2 5.0 49 418-477 14-64 (103)
268 1why_A Hypothetical protein ri 96.1 0.0069 2.4E-07 49.3 5.3 47 418-477 16-62 (97)
269 2dnq_A RNA-binding protein 4B; 96.1 0.012 4.1E-07 47.2 6.6 46 417-477 6-51 (90)
270 4f25_A Polyadenylate-binding p 96.1 0.0045 1.6E-07 52.5 4.3 48 419-477 5-54 (115)
271 3ex7_B RNA-binding protein 8A; 96.1 0.0072 2.5E-07 51.5 5.5 50 417-477 20-73 (126)
272 1p27_B RNA-binding protein 8A; 96.1 0.011 3.9E-07 48.6 6.6 49 418-477 22-74 (106)
273 1x4c_A Splicing factor, argini 96.1 0.011 3.8E-07 49.3 6.5 47 418-478 14-60 (108)
274 1x5u_A Splicing factor 3B subu 96.1 0.0066 2.3E-07 50.0 5.1 49 418-477 14-66 (105)
275 2cqc_A Arginine/serine-rich sp 96.1 0.0069 2.3E-07 48.8 5.0 50 417-477 13-66 (95)
276 2cpj_A Non-POU domain-containi 96.1 0.0064 2.2E-07 49.7 4.9 49 416-477 12-60 (99)
277 2dnh_A Bruno-like 5, RNA bindi 96.1 0.01 3.5E-07 48.8 6.1 49 418-477 14-65 (105)
278 1uaw_A Mouse-musashi-1; RNP-ty 96.0 0.0026 9.1E-08 49.2 2.3 47 421-478 2-52 (77)
279 3ucg_A Polyadenylate-binding p 96.0 0.0087 3E-07 47.5 5.5 49 419-478 6-58 (89)
280 2cq4_A RNA binding motif prote 96.0 0.0075 2.6E-07 50.6 5.3 49 419-478 25-77 (114)
281 2wbr_A GW182, gawky, LD47780P; 96.0 0.0042 1.4E-07 51.7 3.6 47 419-478 7-53 (89)
282 2dgx_A KIAA0430 protein; RRM d 96.0 0.013 4.5E-07 47.8 6.6 54 417-477 7-61 (96)
283 1nu4_A U1A RNA binding domain; 96.0 0.0057 2E-07 49.5 4.4 53 418-477 7-60 (97)
284 1whx_A Hypothetical protein ri 96.0 0.006 2.1E-07 51.5 4.5 47 418-477 9-55 (111)
285 2cqi_A Nucleolysin TIAR; RNA r 96.0 0.0098 3.3E-07 48.9 5.7 49 418-477 14-64 (103)
286 2cqg_A TDP-43, TAR DNA-binding 96.0 0.011 3.8E-07 48.5 6.0 49 418-477 14-66 (103)
287 2diu_A KIAA0430 protein; struc 96.0 0.0063 2.2E-07 51.3 4.5 46 419-477 8-55 (96)
288 2kxn_B Transformer-2 protein h 96.0 0.0069 2.4E-07 52.7 4.9 50 417-477 44-97 (129)
289 1x5p_A Negative elongation fac 96.0 0.018 6.1E-07 46.9 7.1 45 418-477 14-58 (97)
290 2ywk_A Putative RNA-binding pr 95.9 0.0074 2.5E-07 48.7 4.7 49 418-477 15-66 (95)
291 3ulh_A THO complex subunit 4; 95.9 0.01 3.5E-07 49.0 5.5 50 417-477 27-79 (107)
292 2ytc_A PRE-mRNA-splicing facto 95.9 0.013 4.6E-07 46.1 6.0 48 418-478 11-58 (85)
293 2dgo_A Cytotoxic granule-assoc 95.9 0.014 4.8E-07 48.9 6.3 50 417-477 13-66 (115)
294 1x5s_A Cold-inducible RNA-bind 95.9 0.0069 2.4E-07 49.6 4.3 50 417-477 10-63 (102)
295 1x5o_A RNA binding motif, sing 95.9 0.007 2.4E-07 50.7 4.4 51 418-479 24-77 (114)
296 1wey_A Calcipressin 1; structu 95.8 0.017 5.8E-07 49.4 6.6 74 287-377 4-82 (104)
297 2div_A TRNA selenocysteine ass 95.8 0.0072 2.5E-07 49.2 4.2 51 417-478 7-62 (99)
298 1wg5_A Heterogeneous nuclear r 95.8 0.019 6.6E-07 47.6 6.8 50 418-478 14-67 (104)
299 1x4g_A Nucleolysin TIAR; struc 95.8 0.011 3.8E-07 49.2 5.4 47 418-477 24-70 (109)
300 2jvr_A Nucleolar protein 3; RN 95.8 0.0077 2.6E-07 51.5 4.4 49 418-477 27-76 (111)
301 2dh8_A DAZ-associated protein 95.8 0.0059 2E-07 50.4 3.6 50 418-478 15-68 (105)
302 2rs2_A Musashi-1, RNA-binding 95.8 0.009 3.1E-07 50.2 4.7 49 418-477 24-76 (109)
303 2kt5_A RNA and export factor-b 95.8 0.011 3.7E-07 50.5 5.2 50 417-477 33-85 (124)
304 2jrs_A RNA-binding protein 39; 95.8 0.0095 3.3E-07 50.0 4.8 50 417-477 24-77 (108)
305 1oo0_B CG8781-PA, drosophila Y 95.8 0.019 6.4E-07 47.7 6.6 50 417-477 24-77 (110)
306 2do0_A HnRNP M, heterogeneous 95.7 0.013 4.4E-07 48.9 5.6 49 418-477 14-65 (114)
307 3md1_A Nuclear and cytoplasmic 95.7 0.014 4.9E-07 45.6 5.5 47 420-477 2-52 (83)
308 1wwh_A Nucleoporin 35, nucleop 95.7 0.038 1.3E-06 48.3 8.6 71 288-376 24-94 (119)
309 2xs2_A Deleted in azoospermia- 95.7 0.011 3.7E-07 48.5 4.8 49 418-477 8-59 (102)
310 2hvz_A Splicing factor, argini 95.7 0.0061 2.1E-07 49.9 3.3 45 421-477 2-46 (101)
311 2fy1_A RNA-binding motif prote 95.7 0.01 3.4E-07 50.5 4.7 48 419-477 7-57 (116)
312 2e44_A Insulin-like growth fac 95.7 0.0078 2.7E-07 48.7 3.8 50 418-478 14-64 (96)
313 2cpz_A CUG triplet repeat RNA- 95.7 0.0072 2.5E-07 50.8 3.7 49 418-477 24-76 (115)
314 2jvo_A Nucleolar protein 3; nu 95.7 0.012 4E-07 49.5 5.0 45 418-477 30-74 (108)
315 2err_A Ataxin-2-binding protei 95.7 0.012 4.1E-07 49.4 5.0 50 418-478 28-79 (109)
316 2e5i_A Heterogeneous nuclear r 95.7 0.025 8.5E-07 49.5 7.2 43 422-477 28-71 (124)
317 2xnq_A Nuclear polyadenylated 95.6 0.015 5E-07 47.8 5.4 47 417-477 20-66 (97)
318 2la4_A Nuclear and cytoplasmic 95.6 0.011 3.7E-07 48.4 4.6 47 418-477 26-72 (101)
319 1x4b_A Heterogeneous nuclear r 95.6 0.0093 3.2E-07 50.2 4.3 49 419-478 27-79 (116)
320 2dgt_A RNA-binding protein 30; 95.6 0.018 6E-07 46.4 5.7 46 417-477 8-53 (92)
321 2cq2_A Hypothetical protein LO 95.6 0.012 4E-07 51.0 4.9 47 418-477 24-72 (114)
322 1u6f_A Tcubp1, RNA-binding pro 95.6 0.012 4E-07 51.1 4.9 49 418-477 41-93 (139)
323 1syx_B CD2BP2, CD2 antigen cyt 95.6 0.0075 2.6E-07 49.9 3.4 51 23-73 25-80 (86)
324 2kvi_A Nuclear polyadenylated 95.6 0.014 4.7E-07 47.6 5.1 47 417-477 8-54 (96)
325 2dis_A Unnamed protein product 95.6 0.014 4.7E-07 48.4 5.1 49 418-477 7-61 (109)
326 2jwn_A Embryonic polyadenylate 95.6 0.011 3.6E-07 50.3 4.4 47 420-477 37-87 (124)
327 2j76_E EIF-4B, EIF4B, eukaryot 95.6 0.0086 2.9E-07 49.3 3.7 48 418-477 18-70 (100)
328 1wi8_A EIF-4B, eukaryotic tran 95.6 0.022 7.5E-07 46.9 6.2 49 417-477 13-66 (104)
329 2lkz_A RNA-binding protein 5; 95.6 0.0047 1.6E-07 51.3 2.1 48 419-477 9-62 (95)
330 1h2v_Z 20 kDa nuclear CAP bind 95.5 0.015 5.2E-07 51.5 5.5 51 417-478 37-91 (156)
331 2d9o_A DNAJ (HSP40) homolog, s 95.5 0.014 4.7E-07 49.1 4.9 34 443-477 30-63 (100)
332 1p1t_A Cleavage stimulation fa 95.5 0.0033 1.1E-07 51.7 0.9 48 419-477 8-59 (104)
333 1whv_A Poly(A)-specific ribonu 95.5 0.029 9.9E-07 47.5 6.6 54 290-359 17-70 (100)
334 1iqt_A AUF1, heterogeneous nuc 95.5 0.0043 1.5E-07 47.9 1.5 46 422-478 2-51 (75)
335 2cqb_A Peptidyl-prolyl CIS-tra 95.5 0.011 3.7E-07 48.4 4.0 49 418-477 11-63 (102)
336 2dng_A Eukaryotic translation 95.4 0.033 1.1E-06 45.7 6.9 49 417-477 13-65 (103)
337 2e5j_A Methenyltetrahydrofolat 95.4 0.012 4.3E-07 47.8 4.3 48 418-477 18-65 (97)
338 2dgu_A Heterogeneous nuclear r 95.4 0.011 3.8E-07 48.7 4.0 46 417-477 9-54 (103)
339 1x5t_A Splicing factor 3B subu 95.4 0.0088 3E-07 48.3 3.3 50 418-478 4-58 (96)
340 3zzy_A Polypyrimidine tract-bi 95.4 0.019 6.6E-07 50.8 5.6 45 421-477 30-75 (130)
341 2m2b_A RNA-binding protein 10; 95.4 0.013 4.4E-07 50.7 4.3 50 417-477 21-76 (131)
342 1fjc_A Nucleolin RBD2, protein 95.3 0.013 4.4E-07 47.4 4.0 49 417-477 14-62 (96)
343 2la6_A RNA-binding protein FUS 95.3 0.018 6.2E-07 46.9 4.9 50 417-477 11-72 (99)
344 2cpi_A CCR4-NOT transcription 95.3 0.022 7.4E-07 47.8 5.4 49 418-477 14-72 (111)
345 2ku7_A MLL1 PHD3-CYP33 RRM chi 95.3 0.024 8.2E-07 48.7 5.9 49 418-477 62-114 (140)
346 2cpe_A RNA-binding protein EWS 95.2 0.012 4.2E-07 49.1 3.5 51 417-478 13-75 (113)
347 2cpd_A Apobec-1 stimulating pr 95.2 0.039 1.3E-06 44.9 6.5 48 416-478 12-61 (99)
348 3beg_B Splicing factor, argini 95.1 0.018 6.1E-07 48.8 4.4 45 419-477 16-60 (115)
349 2e5g_A U6 snRNA-specific termi 95.1 0.052 1.8E-06 43.8 7.0 49 418-478 7-55 (94)
350 2cpy_A RNA-binding protein 12; 95.1 0.02 6.8E-07 48.3 4.5 49 418-477 14-66 (114)
351 2dhx_A Poly (ADP-ribose) polym 95.0 0.1 3.5E-06 44.5 8.7 70 288-377 8-82 (104)
352 2dnp_A RNA-binding protein 14; 95.0 0.025 8.5E-07 45.3 4.8 46 418-478 8-53 (90)
353 2cpx_A Hypothetical protein FL 94.9 0.014 4.9E-07 48.7 3.3 49 418-477 24-76 (115)
354 1wf1_A RNA-binding protein RAL 94.9 0.03 1E-06 46.6 5.2 45 418-477 26-71 (110)
355 2bz2_A Negative elongation fac 94.9 0.022 7.5E-07 49.0 4.4 45 418-477 38-82 (121)
356 2ek1_A RNA-binding protein 12; 94.9 0.012 4.2E-07 47.3 2.7 49 418-477 14-66 (95)
357 2ki2_A SS-DNA binding protein 94.8 0.013 4.4E-07 46.8 2.6 47 420-477 2-52 (90)
358 2voo_A Lupus LA protein; RNA-b 94.8 0.017 6E-07 53.7 3.8 47 420-477 110-159 (193)
359 2mss_A Protein (musashi1); RNA 94.8 0.019 6.6E-07 44.1 3.4 45 422-477 2-50 (75)
360 3u1l_A PRE-mRNA-splicing facto 94.7 0.052 1.8E-06 52.8 7.0 64 418-485 133-204 (240)
361 3ctr_A Poly(A)-specific ribonu 94.7 0.032 1.1E-06 47.3 4.7 54 290-359 7-60 (101)
362 2f3j_A RNA and export factor b 94.7 0.026 8.7E-07 51.9 4.5 49 418-477 87-138 (177)
363 1wez_A HnRNP H', FTP-3, hetero 94.6 0.023 7.7E-07 47.3 3.7 50 417-478 13-65 (102)
364 2hgm_A HNRPF protein, heteroge 94.6 0.069 2.4E-06 46.7 6.9 48 418-477 41-93 (126)
365 3n9u_C Cleavage and polyadenyl 94.5 0.037 1.3E-06 49.8 5.0 48 419-477 55-108 (156)
366 3q2s_C Cleavage and polyadenyl 94.4 0.033 1.1E-06 53.2 4.7 49 419-478 68-122 (229)
367 2cqp_A RNA-binding protein 12; 94.4 0.019 6.5E-07 46.5 2.5 49 418-477 14-66 (98)
368 2dnl_A Cytoplasmic polyadenyla 94.3 0.025 8.6E-07 47.6 3.3 49 418-478 7-62 (114)
369 3p3d_A Nucleoporin 53; structu 94.3 0.086 2.9E-06 46.8 6.8 86 287-377 6-97 (132)
370 2hgn_A Heterogeneous nuclear r 94.3 0.026 8.7E-07 50.2 3.4 47 419-477 46-95 (139)
371 2db1_A Heterogeneous nuclear r 94.2 0.031 1E-06 47.6 3.5 49 418-477 16-70 (118)
372 3p5t_L Cleavage and polyadenyl 94.2 0.016 5.6E-07 46.5 1.7 46 421-477 3-54 (90)
373 2fc9_A NCL protein; structure 94.1 0.024 8.1E-07 46.3 2.7 49 418-477 14-62 (101)
374 3pq1_A Poly(A) RNA polymerase; 94.1 0.029 9.8E-07 59.6 3.9 54 289-356 54-107 (464)
375 2dha_A FLJ20171 protein; RRM d 94.0 0.026 8.8E-07 49.1 2.7 48 419-477 23-77 (123)
376 3tht_A Alkylated DNA repair pr 94.0 0.041 1.4E-06 56.2 4.6 50 417-477 16-65 (345)
377 1wel_A RNA-binding protein 12; 93.6 0.037 1.3E-06 47.2 3.0 50 418-478 24-77 (124)
378 2lmi_A GRSF-1, G-rich sequence 93.5 0.073 2.5E-06 44.2 4.5 49 418-477 10-64 (107)
379 2dnn_A RNA-binding protein 12; 93.4 0.075 2.6E-06 45.0 4.6 47 419-477 16-65 (109)
380 2l08_A Regulator of nonsense t 93.4 0.11 3.8E-06 43.8 5.5 84 288-379 9-96 (97)
381 2hzc_A Splicing factor U2AF 65 93.4 0.1 3.4E-06 41.0 5.0 47 418-477 5-62 (87)
382 2lcw_A RNA-binding protein FUS 92.4 0.015 5.3E-07 48.9 0.0 50 418-478 6-67 (116)
383 2hgl_A HNRPF protein, heteroge 93.2 0.059 2E-06 47.6 3.8 49 418-477 43-97 (136)
384 1fj7_A Nucleolin RBD1, protein 92.9 0.033 1.1E-06 45.4 1.6 50 418-478 16-68 (101)
385 2dgw_A Probable RNA-binding pr 92.6 0.14 4.9E-06 40.7 5.0 49 418-478 9-60 (91)
386 2cqh_A IGF-II mRNA-binding pro 92.6 0.04 1.4E-06 44.2 1.6 46 418-477 7-53 (93)
387 1wg1_A KIAA1579 protein, homol 91.7 0.091 3.1E-06 41.9 2.7 45 419-477 5-49 (88)
388 2j8a_A Histone-lysine N-methyl 91.3 0.16 5.5E-06 45.3 4.1 50 420-476 3-56 (136)
389 2dnr_A Synaptojanin-1; RRM dom 91.2 0.29 9.8E-06 40.8 5.3 51 419-476 7-57 (91)
390 3egn_A RNA-binding protein 40; 90.9 0.13 4.3E-06 44.8 3.0 49 418-477 44-101 (143)
391 1owx_A Lupus LA protein, SS-B, 89.8 0.33 1.1E-05 42.4 4.6 50 416-477 15-64 (121)
392 2fc8_A NCL protein; structure 88.6 0.44 1.5E-05 38.6 4.4 51 417-478 13-64 (102)
393 1ufw_A Synaptojanin 2; RNP dom 81.3 1 3.5E-05 37.7 3.3 53 418-476 14-66 (95)
394 3d45_A Poly(A)-specific ribonu 67.7 10 0.00035 40.3 7.5 56 288-360 440-495 (507)
395 1ymz_A CC45; artificial protei 40.9 24 0.00082 24.5 3.3 27 167-193 5-31 (43)
396 2kyk_A E3 ubiquitin-protein li 37.8 40 0.0014 22.9 4.0 24 170-193 6-29 (39)
397 1wr3_A Ubiquitin-protein ligas 30.6 54 0.0018 21.7 3.6 24 170-193 4-27 (36)
398 1e0m_A Wwprototype; SH3 protot 29.1 56 0.0019 21.6 3.5 24 170-193 3-26 (37)
399 2ysh_A GAS-7, growth-arrest-sp 27.3 67 0.0023 21.7 3.7 25 170-194 7-31 (40)
400 2zaj_A Membrane-associated gua 25.7 87 0.003 22.6 4.2 30 164-193 7-36 (49)
401 2yse_A Membrane-associated gua 25.4 1E+02 0.0036 23.3 4.8 30 165-194 8-37 (60)
402 3pq1_A Poly(A) RNA polymerase; 24.6 40 0.0014 35.5 3.1 22 444-465 66-87 (464)
403 2dmv_A Itchy homolog E3 ubiqui 23.6 80 0.0027 21.8 3.6 24 170-193 7-30 (43)
404 1wr4_A Ubiquitin-protein ligas 23.5 81 0.0028 20.6 3.5 24 170-193 4-27 (36)
405 4e8u_A Putative uncharacterize 20.4 1.7E+02 0.006 26.7 6.1 63 290-363 14-88 (172)
406 1wr7_A NEDD4-2; all-beta, liga 20.1 1.2E+02 0.0042 20.6 4.0 24 170-193 8-31 (41)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.84 E-value=2.9e-20 Score=171.22 Aligned_cols=141 Identities=13% Similarity=0.157 Sum_probs=112.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. .|+|++++.+|.++|||||+|.+.++|..||.. ++..|.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~- 80 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLT--------DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD- 80 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC-
Confidence 4577999999999999999999999999999 999999998999999999999999999999985 999998
Q ss_pred CCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHH
Q 011382 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (487)
Q Consensus 366 G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~E 445 (487)
|+ .|.|..+........ .......++|+|+|| |.++ .++
T Consensus 81 g~--~l~v~~~~~~~~~~~----------------------------~~~~~~~~~l~V~nL--p~~~---------t~~ 119 (196)
T 1l3k_A 81 GR--VVEPKRAVSREDSQR----------------------------PGAHLTVKKIFVGGI--KEDT---------EEH 119 (196)
T ss_dssp TE--ECEEEECCC---------------------------------------CCSEEEEECC--TTTC---------CHH
T ss_pred CE--EeeeecccCcccccc----------------------------cccCCCcceEEEeCC--CCCC---------CHH
Confidence 64 577877653211000 001123479999999 2222 357
Q ss_pred HHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 446 DVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 446 DVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
+|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 120 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~ 155 (196)
T 1l3k_A 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 155 (196)
T ss_dssp HHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred HHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECC
Confidence 89999999999999999743 357999999976
No 2
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.83 E-value=5.7e-20 Score=165.71 Aligned_cols=139 Identities=14% Similarity=0.262 Sum_probs=113.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCC--CccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETG--MKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG--~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
.+++|||+|||+++|+++|+++|++||.|. .|+|++++.+| +++|||||+|.+.++|..|++.|||..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVY--------EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 457999999999999999999999999999 99999998776 89999999999999999999999999887
Q ss_pred CCCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHH
Q 011382 365 PDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELE 444 (487)
Q Consensus 365 ~G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~ 444 (487)
+|....|.|..+..... .....++|+|+||-. .+ .+
T Consensus 74 ~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~l~v~nl~~--~~---------t~ 109 (175)
T 3nmr_A 74 PGMHHPIQMKPADSEKN---------------------------------NAVEDRKLFIGMISK--KC---------TE 109 (175)
T ss_dssp TTCSSCCEEEECGGGCC---------------------------------SCGGGSEEEEESCCT--TC---------CH
T ss_pred cCCccceEEcccccccc---------------------------------ccCCCCeEEEcCCCC--cC---------CH
Confidence 45445677776653211 011346899999922 21 35
Q ss_pred HHHHHHhccCcceEEEEEecC---CCCceEEEEEEe
Q 011382 445 ADVQEECVKIGPVDSVKVMKL---NVEINCILIIFL 477 (487)
Q Consensus 445 EDVreEC~KfG~V~~V~V~~~---~p~Gvv~V~f~~ 477 (487)
++|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 110 ~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~ 145 (175)
T 3nmr_A 110 NDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTT 145 (175)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred HHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECC
Confidence 789999999999999999754 346889999976
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.83 E-value=2.8e-20 Score=176.43 Aligned_cols=137 Identities=18% Similarity=0.160 Sum_probs=112.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+++|||+|||+++|+++|+++|++||.|. .|+|++|+.+|+++|||||+|.+.++|..||+.||+..+. |
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~-g 84 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPIL--------SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK-G 84 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET-T
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEE--------EEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC-C
Confidence 457999999999999999999999999999 9999999999999999999999999999999999999998 6
Q ss_pred CceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHH
Q 011382 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (487)
Q Consensus 367 ~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~ED 446 (487)
+ .|+|..+....... . ....+|+|+||-. .+ .+++
T Consensus 85 ~--~i~~~~~~~~~~~~--------------------~------------~~~~~l~v~nl~~--~~---------t~~~ 119 (213)
T 4f02_A 85 K--PVRIMWSQRDPSLR--------------------K------------SGVGNIFIKNLDK--SI---------DNKA 119 (213)
T ss_dssp E--ECEEEECCCCTHHH--------------------H------------HCTTEEEEESCCT--TC---------CHHH
T ss_pred c--cccccccccccccc--------------------c------------cccccceECCccc--cc---------HHHH
Confidence 4 56777665321100 0 0134799999922 21 2578
Q ss_pred HHHHhccCcceEEEEEecC--CCCceEEEEEEe
Q 011382 447 VQEECVKIGPVDSVKVMKL--NVEINCILIIFL 477 (487)
Q Consensus 447 VreEC~KfG~V~~V~V~~~--~p~Gvv~V~f~~ 477 (487)
|++.|++||.|.+|.|... ...|+++|.|..
T Consensus 120 l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~ 152 (213)
T 4f02_A 120 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFET 152 (213)
T ss_dssp HHHHHGGGSCEEEEEEEEETTEEEEEEEEEESS
T ss_pred HHHHHhhcCCeEEEEeeccCCCCceEEEEEeCC
Confidence 9999999999999998643 357999999875
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.83 E-value=7.2e-20 Score=163.53 Aligned_cols=134 Identities=19% Similarity=0.245 Sum_probs=113.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.++|||+|||+++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.++++|..|++.|||..|. |+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~ 72 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIE--------SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ-TK 72 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET-TE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeE--------EEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC-Cc
Confidence 47899999999999999999999999999 9999999889999999999999999999999999999998 64
Q ss_pred ceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHHH
Q 011382 368 KIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADV 447 (487)
Q Consensus 368 ~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDV 447 (487)
+|+|..+..... ....++|+++||-. .+ ..++|
T Consensus 73 --~l~v~~~~~~~~----------------------------------~~~~~~l~v~nl~~--~~---------t~~~l 105 (167)
T 1fxl_A 73 --TIKVSYARPSSA----------------------------------SIRDANLYVSGLPK--TM---------TQKEL 105 (167)
T ss_dssp --ECEEEECCCCCG----------------------------------GGTTCEEEEESCCT--TC---------CHHHH
T ss_pred --eEEEEecCCCcc----------------------------------cCCCCcEEECCCCC--cC---------CHHHH
Confidence 578877753211 01246899999932 21 35789
Q ss_pred HHHhccCcceEEEEEecCC----CCceEEEEEEe
Q 011382 448 QEECVKIGPVDSVKVMKLN----VEINCILIIFL 477 (487)
Q Consensus 448 reEC~KfG~V~~V~V~~~~----p~Gvv~V~f~~ 477 (487)
++.|++||.|.+|.|.... +.|+++|.|..
T Consensus 106 ~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 139 (167)
T 1fxl_A 106 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 139 (167)
T ss_dssp HHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred HHHHHhcCCEeEEEEEecCCCCCccceEEEEeCC
Confidence 9999999999999997543 47999999876
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.82 E-value=6.5e-20 Score=164.59 Aligned_cols=134 Identities=20% Similarity=0.253 Sum_probs=113.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
+++|||+|||.++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..|+..|||..|. |+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~ 73 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPIN--------TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR-NK 73 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEE--------EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET-TE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC-Cc
Confidence 57999999999999999999999999999 9999999889999999999999999999999999999998 64
Q ss_pred ceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHHH
Q 011382 368 KIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADV 447 (487)
Q Consensus 368 ~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDV 447 (487)
+|+|..+..... ....++|++.||-. .+ .+++|
T Consensus 74 --~l~v~~~~~~~~----------------------------------~~~~~~l~v~nl~~--~~---------t~~~l 106 (168)
T 1b7f_A 74 --RLKVSYARPGGE----------------------------------SIKDTNLYVTNLPR--TI---------TDDQL 106 (168)
T ss_dssp --ECEEEECCCCSS----------------------------------TTTTCEEEEESCCT--TC---------CHHHH
T ss_pred --EEEEEecCCCcc----------------------------------cCCCCCEEEeCCCC--CC---------CHHHH
Confidence 578887753211 12346899999932 21 35789
Q ss_pred HHHhccCcceEEEEEecCC----CCceEEEEEEe
Q 011382 448 QEECVKIGPVDSVKVMKLN----VEINCILIIFL 477 (487)
Q Consensus 448 reEC~KfG~V~~V~V~~~~----p~Gvv~V~f~~ 477 (487)
++.|++||.|.+|.|.... +.|+++|.|..
T Consensus 107 ~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 140 (168)
T 1b7f_A 107 DTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNK 140 (168)
T ss_dssp HHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred HHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECC
Confidence 9999999999999997543 46899999876
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.82 E-value=9.8e-20 Score=170.19 Aligned_cols=146 Identities=15% Similarity=0.180 Sum_probs=112.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||.++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||+.|||..|. |
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g 97 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIK--------SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG-G 97 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC--
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEE--------EEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC-C
Confidence 356899999999999999999999999999 9999999889999999999999999999999999999998 7
Q ss_pred CceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHH
Q 011382 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (487)
Q Consensus 367 ~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~ED 446 (487)
+ .|+|..+........ ... ..... ....++|+|+|+-. ++ .++|
T Consensus 98 ~--~l~v~~~~~~~~~~~---------~~~---~~~~~-----------~~~~~~l~v~nlp~--~~---------t~~~ 141 (216)
T 2qfj_A 98 R--NIKVGRPSNIGQAQP---------IID---QLAEE-----------ARAFNRIYVASVHQ--DL---------SDDD 141 (216)
T ss_dssp C--CCEEECCSCCGGGHH---------HHH---HHHHH-----------HTTSCEEEEECCCT--TC---------CHHH
T ss_pred e--eEEEecCCCccccch---------hhh---hhhcc-----------cCCCcEEEEeCCCC--cC---------CHHH
Confidence 5 467876653221110 000 01111 12347999999932 21 3678
Q ss_pred HHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 447 VQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 447 VreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 142 l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 142 IKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp HHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred HHHHHhccCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 9999999999999999754 347999999976
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.3e-19 Score=160.14 Aligned_cols=134 Identities=18% Similarity=0.167 Sum_probs=110.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCc
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~ 368 (487)
++|||+|||.++|+++|+++|++||.|. .|+|++++ +|+++|||||+|.+.++|..|+..|||..|. |+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~- 69 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIA--------NIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIE-NN- 69 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEE--------EEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEET-TE-
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeE--------EEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccC-CC-
Confidence 3799999999999999999999999999 99999995 6899999999999999999999999999998 64
Q ss_pred eeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHHHH
Q 011382 369 IPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQ 448 (487)
Q Consensus 369 i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVr 448 (487)
.|+|..+..... ......++|+++|+- .++ ..++|+
T Consensus 70 -~i~v~~~~~~~~--------------------------------~~~~~~~~l~v~nl~--~~~---------t~~~l~ 105 (166)
T 3md3_A 70 -IVKINWAFQSQQ--------------------------------SSSDDTFNLFVGDLN--VNV---------DDETLR 105 (166)
T ss_dssp -ECEEEECCCCCC--------------------------------CCCTTCEEEEEESCC--TTC---------CHHHHH
T ss_pred -eeEEEEcCCCCC--------------------------------CCCCCCceEEECCCC--CCC---------CHHHHH
Confidence 577877653211 011245799999992 222 357899
Q ss_pred HHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 449 EECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 449 eEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
+.|++||.|.+|.|... .+.|+++|.|..
T Consensus 106 ~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 138 (166)
T 3md3_A 106 NAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTS 138 (166)
T ss_dssp HHHTTSTTEEEEEEEECTTTCCEEEEEEEEESC
T ss_pred HHHhccCCeeEEEEEecCCCCCcceEEEEEeCC
Confidence 99999999999999743 457899999876
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.80 E-value=2.3e-19 Score=161.21 Aligned_cols=133 Identities=16% Similarity=0.188 Sum_probs=108.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+++|||+|||+++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||. ++..|. |
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~-g 70 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVT--------DLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILD-G 70 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEE--------EEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEET-T
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccC-C
Confidence 467999999999999999999999999999 99999998899999999999999999999998 456776 6
Q ss_pred CceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHH
Q 011382 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (487)
Q Consensus 367 ~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~ED 446 (487)
+ .|.|..+..... . ...++|++.||-. ++ ..++
T Consensus 71 ~--~i~v~~~~~~~~---------------------~-------------~~~~~l~V~nlp~--~~---------t~~~ 103 (167)
T 2cjk_A 71 K--VIDPKRAIPRDE---------------------Q-------------DKTGKIFVGGIGP--DV---------RPKE 103 (167)
T ss_dssp E--ECCCEECCCHHH---------------------H-------------HHCEEEEEEEECT--TC---------CHHH
T ss_pred e--Ecccccccchhh---------------------c-------------cCCCeEEECCCCC--CC---------CHHH
Confidence 4 456665542100 0 0136899999932 21 3578
Q ss_pred HHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 447 VQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 447 VreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 104 l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 138 (167)
T 2cjk_A 104 FEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDS 138 (167)
T ss_dssp HHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESS
T ss_pred HHHHHHhCccEEEEEEEEcCCCCccceEEEEEECC
Confidence 9999999999999999643 467999999865
No 9
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.78 E-value=1.3e-18 Score=170.25 Aligned_cols=79 Identities=28% Similarity=0.467 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCc
Q 011382 286 KVNTHVYVTGLPDDVTVEEMV----EVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~----e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~ 361 (487)
+.+++|||+|||+++|+++|+ ++|++||.|. .|+|.+ +|++||||||+|.+.++|..||..|||.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~--------~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQIL--------DILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF 75 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeE--------EEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 567899999999999999966 9999999999 898875 6899999999999999999999999999
Q ss_pred ccCCCCceeEEEEeccc
Q 011382 362 PFRPDGKIPMSVTQAKF 378 (487)
Q Consensus 362 ~~~~G~~i~I~V~~A~~ 378 (487)
.|. |+ .|+|..+..
T Consensus 76 ~~~-g~--~l~v~~a~~ 89 (282)
T 3pgw_A 76 PFY-DK--PMRIQYAKT 89 (282)
T ss_pred eeC-Cc--EEEEEEecc
Confidence 998 75 578887754
No 10
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.77 E-value=9.6e-19 Score=148.02 Aligned_cols=81 Identities=26% Similarity=0.405 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
+.|+|||+|||+++|+++|+++|++||.|. .|+|++|+.+|+++|||||+|.++++|..||+.|||..|. |
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~-g 88 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVE--------SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ-S 88 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC-C
Confidence 568999999999999999999999999999 9999999999999999999999999999999999999998 7
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+ +|+|+.|+.
T Consensus 89 r--~l~V~~AkP 98 (99)
T 4fxv_A 89 K--TIKVSYARP 98 (99)
T ss_dssp E--ECEEEECCB
T ss_pred E--EEEEEEeeC
Confidence 4 678888863
No 11
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.74 E-value=1.8e-17 Score=162.37 Aligned_cols=139 Identities=17% Similarity=0.150 Sum_probs=114.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+++|||+|||+++|+++|+++|++||.|. .|+|++++.+|.++|||||+|.+.++|..|+..|||..|. |
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g 164 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLE--------RCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG-P 164 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET-T
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCee--------EEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC-C
Confidence 346899999999999999999999999999 9999999889999999999999999999999999999998 6
Q ss_pred CceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHH
Q 011382 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (487)
Q Consensus 367 ~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~ED 446 (487)
+ +|.|..+....... .....++|+|+|+-. .+- .++|
T Consensus 165 ~--~i~v~~a~~~~~~~-------------------------------~~~~~~~l~v~nlp~--~~~--------~~~~ 201 (284)
T 3smz_A 165 R--TLYVHWTDAGQLTP-------------------------------ALLHSRCLCVDRLPP--GFN--------DVDA 201 (284)
T ss_dssp E--ECEEEECCGGGCCT-------------------------------TTTSCSEEEEECCCT--TCC--------CHHH
T ss_pred c--EEEEEECCCCCCCc-------------------------------ccCCccEEEEecCCc--ccC--------CHHH
Confidence 4 67888876421100 112357899999932 210 2578
Q ss_pred HHHHhccCcceEEEEEecC---CCCceEEEEEEe
Q 011382 447 VQEECVKIGPVDSVKVMKL---NVEINCILIIFL 477 (487)
Q Consensus 447 VreEC~KfG~V~~V~V~~~---~p~Gvv~V~f~~ 477 (487)
|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 202 l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 235 (284)
T 3smz_A 202 LCRALSAVHSPTFCQLACGQDGQLKGFAVLEYET 235 (284)
T ss_dssp HHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSS
T ss_pred HHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCC
Confidence 9999999999999998753 357899999875
No 12
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=140.23 Aligned_cols=89 Identities=37% Similarity=0.662 Sum_probs=79.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||.++|+++|+++|++||.|..+..++.|.|+|++|+.+|+++|||||+|.+.++|..||+.|||..|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~- 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS- 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 4678999999999999999999999999999555556666999999999999999999999999999999999999998
Q ss_pred CCceeEEEEecc
Q 011382 366 DGKIPMSVTQAK 377 (487)
Q Consensus 366 G~~i~I~V~~A~ 377 (487)
|+ +|+|+.|+
T Consensus 90 g~--~l~V~~A~ 99 (99)
T 2la6_A 90 GN--PIKVSFAT 99 (99)
T ss_dssp SS--BCEEEECC
T ss_pred Cc--EEEEEecC
Confidence 76 56887763
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=1.3e-17 Score=158.74 Aligned_cols=158 Identities=18% Similarity=0.155 Sum_probs=110.5
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 287 VNTHVYVTGLP-DDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 287 ~nt~VyV~nLP-~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
.+++|||+||| +.+|+++|+++|++||.|. +|+|+++ ++|||||+|.+.++|..||+.|||..|.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~--------~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~- 68 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVE--------KVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMF- 68 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEE--------EEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeE--------EEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 46799999999 8999999999999999999 9999865 3899999999999999999999999998
Q ss_pred CCceeEEEEeccccccchhh------hhhh-hh--HHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccc
Q 011382 366 DGKIPMSVTQAKFEQKGERF------IAKQ-VD--SKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRAD 436 (487)
Q Consensus 366 G~~i~I~V~~A~~~~kg~~~------~~kk-~~--~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~D 436 (487)
|+ +|+|..+......... .... .+ .....+....... .. .....++++|+++|+- .++
T Consensus 69 g~--~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~-----~~~~~p~~~l~v~NLp--~~~--- 135 (205)
T 3tyt_A 69 GQ--KMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQA-AK-----NRIQHPSNVLHFFNAP--LEV--- 135 (205)
T ss_dssp TE--ECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHH-TT-----SCCCCCCSEEEEEEEC--TTC---
T ss_pred Cc--eEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccc-cc-----cccCCCcceEEEeCCC--CCC---
Confidence 74 5788887643210000 0000 00 0000000000000 00 0112346799999992 222
Q ss_pred hhhHHHHHHHHHHHhccCcce--EEEEEecC--CCCceEEEEEEe
Q 011382 437 ENLRSELEADVQEECVKIGPV--DSVKVMKL--NVEINCILIIFL 477 (487)
Q Consensus 437 p~~~~ei~EDVreEC~KfG~V--~~V~V~~~--~p~Gvv~V~f~~ 477 (487)
..+||++.|++||.| .+|+|+.. ...|+++|.|..
T Consensus 136 ------t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~ 174 (205)
T 3tyt_A 136 ------TEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDS 174 (205)
T ss_dssp ------CHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSS
T ss_pred ------CHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCC
Confidence 257899999999999 99999765 345999999976
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.73 E-value=5.4e-18 Score=153.85 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=107.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|++||.|. .+ ++++..+|+++|||||+|.+.++|..||+ |||..|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~--------~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~- 79 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKN--------DL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF- 79 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHH--------TC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEET-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcc--------eE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeC-
Confidence 4578999999999999999999999999987 42 23344689999999999999999999996 9999998
Q ss_pred CCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHH
Q 011382 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (487)
Q Consensus 366 G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~E 445 (487)
|+ +|+|..+..... ......++|+++||-. .+ ..+
T Consensus 80 g~--~l~v~~~~~~~~--------------------------------~~~~~~~~l~v~nlp~--~~---------t~~ 114 (175)
T 1fje_B 80 GN--EIKLEKPKGRDS--------------------------------KKVRAARTLLAKNLSF--NI---------TED 114 (175)
T ss_dssp TE--EEEEECCCCSSC--------------------------------STTGGGGEEEEESCCS--SC---------CHH
T ss_pred Ce--EEEEecCCCccc--------------------------------cccccCCEEEEeCCCC--CC---------CHH
Confidence 64 678887764211 0112357999999932 21 357
Q ss_pred HHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 446 DVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 446 DVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
+|++.|++||.|..| .....+.|+++|.|..
T Consensus 115 ~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~ 145 (175)
T 1fje_B 115 ELKEVFEDALEIRLV-SQDGKSKGIAYIEFKS 145 (175)
T ss_dssp HHHHHCTTCSEEEEE-CSSSSCCSEEEEECSS
T ss_pred HHHHHHHhcCeEEEe-cCCCCCceEEEEEECC
Confidence 899999999999988 4456789999999865
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.72 E-value=2.9e-17 Score=161.53 Aligned_cols=142 Identities=11% Similarity=0.162 Sum_probs=107.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC-ccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCG-IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G-~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..++|||+|||.++|+++|+++|++|| .|. .|+|++++ .|.++|||||+|.+.++|..|+..|||..|.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~--------~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 185 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVAL--------SIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIE- 185 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCC--------EEECC--------CCEEEEECSSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeE--------EEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 467999999999999999999999999 999 99999986 5999999999999999999999999999998
Q ss_pred CCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhh-hccchhhHHHHH
Q 011382 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAE-MRADENLRSELE 444 (487)
Q Consensus 366 G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~e-l~~Dp~~~~ei~ 444 (487)
|+ +|.|..+....+... . +......++|+|+||- .+ + ..
T Consensus 186 g~--~l~v~~a~~~~~~~~----------------~-----------~~~~~~~~~l~v~nlp--~~~~---------t~ 225 (292)
T 2ghp_A 186 GY--TLVTKVSNPLEKSKR----------------T-----------DSATLEGREIMIRNLS--TELL---------DE 225 (292)
T ss_dssp TE--ECEEEECCCC------------------------------------CCTTTEEEEEEEC--TTTC---------CH
T ss_pred Cc--EEEEEECCCCccccc----------------c-----------cccCCCCceEEEECCC--cccC---------CH
Confidence 64 678888764322110 0 0011235799999982 22 1 25
Q ss_pred HHHHHHhccCcceEEEEEec-----CCCCceEEEEEEee
Q 011382 445 ADVQEECVKIGPVDSVKVMK-----LNVEINCILIIFLL 478 (487)
Q Consensus 445 EDVreEC~KfG~V~~V~V~~-----~~p~Gvv~V~f~~~ 478 (487)
++|++.|++||.|.+|.|+. ..+.|+++|.|...
T Consensus 226 ~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 226 NLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp HHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred HHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 78999999999999999975 44579999999763
No 16
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=142.41 Aligned_cols=79 Identities=16% Similarity=0.139 Sum_probs=74.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.++|||+|||+++|+++|+++|++||.|. .|+|++|+.||++||||||+|.+.++|..||+.|||..|. |+
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~--------~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~-gr 76 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVE--------EVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM-GN 76 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET-TE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCee--------EEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC-Ce
Confidence 46899999999999999999999999999 9999999999999999999999999999999999999998 75
Q ss_pred ceeEEEEecc
Q 011382 368 KIPMSVTQAK 377 (487)
Q Consensus 368 ~i~I~V~~A~ 377 (487)
+|+|..|.
T Consensus 77 --~i~V~~a~ 84 (110)
T 3s8s_A 77 --IIHAQLDI 84 (110)
T ss_dssp --ECEEEECS
T ss_pred --EEEEEECC
Confidence 57888876
No 17
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4e-17 Score=139.59 Aligned_cols=92 Identities=38% Similarity=0.718 Sum_probs=84.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||+++|+++|+++|++||.|..++.++.|.|+|++|+.+|+++|||||+|.+.++|..||..|||..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 91 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ- 91 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC-
Confidence 4567999999999999999999999999999888899999999999889999999999999999999999999999998
Q ss_pred CCceeEEEEeccccc
Q 011382 366 DGKIPMSVTQAKFEQ 380 (487)
Q Consensus 366 G~~i~I~V~~A~~~~ 380 (487)
|+ +|+|..+....
T Consensus 92 g~--~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GS--KLKVSLARKKP 104 (113)
T ss_dssp TE--ECEEECSSCCC
T ss_pred CC--EEEEEECCCCC
Confidence 64 67898887543
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.71 E-value=1.2e-16 Score=153.02 Aligned_cols=157 Identities=20% Similarity=0.230 Sum_probs=111.9
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 286 KVNTHVYVTGLPD-DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 286 ~~nt~VyV~nLP~-diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
..+++|||+|||+ ++|+++|+++|++||.|. .|+|++++ +|||||+|.+.++|..||+.|||..|.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~--------~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~ 98 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQ--------RVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLH 98 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEE--------EEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeE--------EEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 3567999999999 999999999999999999 99998874 899999999999999999999999998
Q ss_pred CCCceeEEEEecccccc-----chhhhhhhhhHHHHHHHHHHHHHhccCCCC----CCCCCCCCeEEEeeccCChhhhcc
Q 011382 365 PDGKIPMSVTQAKFEQK-----GERFIAKQVDSKKKKKLKKVEEKMLGWGGR----DDAKLTIPATVILRFMFTPAEMRA 435 (487)
Q Consensus 365 ~G~~i~I~V~~A~~~~k-----g~~~~~kk~~~~kkkklqkl~~kl~~w~~~----~~~~~~~~~~VvLkNMf~p~el~~ 435 (487)
|+ +|+|..+..... +........... .......... ......++++|+|+||-. ++
T Consensus 99 -g~--~l~v~~a~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~--~~-- 163 (229)
T 2adc_A 99 -GK--PIRITLSKHQNVQLPREGQEDQGLTKDYG--------NSPLHRFKKPGSKNFQNIFPPSATLHLSNIPP--SV-- 163 (229)
T ss_dssp -SS--BCEEECCSCCCCCCCCSSSSTTTTEEECT--------TCSSCCCCSTTSGGGTTCCCSCSEEEEECCCT--TC--
T ss_pred -Ce--EEEEEEecCccccCccccccccccccccc--------cCcccccCCccccccccCCCCCCEEEEeCCCc--cC--
Confidence 75 578887764311 000000000000 0000000000 001123468999999932 22
Q ss_pred chhhHHHHHHHHHHHhccCc-ceEEEEEecCCCCceEEEEEEee
Q 011382 436 DENLRSELEADVQEECVKIG-PVDSVKVMKLNVEINCILIIFLL 478 (487)
Q Consensus 436 Dp~~~~ei~EDVreEC~KfG-~V~~V~V~~~~p~Gvv~V~f~~~ 478 (487)
.+++|++.|++|| .|.+|.|+.+ ..|+++|.|...
T Consensus 164 -------t~~~l~~~f~~~G~~i~~v~i~~~-~~g~afV~f~~~ 199 (229)
T 2adc_A 164 -------SEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSV 199 (229)
T ss_dssp -------CHHHHHHHHHTTSCCEEEEEECSS-STTCEEEEESSH
T ss_pred -------CHHHHHHHHHHcCCCeeEEEEEEC-CCcEEEEEECCH
Confidence 2578999999999 9999999654 479999999763
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.71 E-value=4.6e-17 Score=151.05 Aligned_cols=161 Identities=20% Similarity=0.196 Sum_probs=110.1
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 288 NTHVYVTGLPD-DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 288 nt~VyV~nLP~-diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
+++|||+|||+ ++|+++|+++|++||.|. .|+|++++ +|||||+|.+.++|..|+..|||..|. |
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~--------~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~-g 68 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQ--------RVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLH-G 68 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCS--------EEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCS-S
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEE--------EEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeec-C
Confidence 57999999999 999999999999999999 99998774 899999999999999999999999998 7
Q ss_pred CceeEEEEeccccccchhhhh-hhhhHHHHHHHHHHHHHhccCCC-CCCCCCCCCeEEEeeccCChhhhccchhhHHHHH
Q 011382 367 GKIPMSVTQAKFEQKGERFIA-KQVDSKKKKKLKKVEEKMLGWGG-RDDAKLTIPATVILRFMFTPAEMRADENLRSELE 444 (487)
Q Consensus 367 ~~i~I~V~~A~~~~kg~~~~~-kk~~~~kkkklqkl~~kl~~w~~-~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~ 444 (487)
+ +|+|..+........... ......+. .-.....+...... .......++++|+|+||-. ++ .+
T Consensus 69 ~--~l~v~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~--~~---------~~ 134 (198)
T 1qm9_A 69 K--PIRITLSKHQNVQLPREGQEDQGLTKD-YGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPP--SV---------SE 134 (198)
T ss_dssp C--CCEEEECCCCSCCCSSSSSSSSSCEEE-SSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCT--TC---------CH
T ss_pred e--EEEEEEecCCCcCCCCcCCcccccccc-ccCCchhhccCccccccccCCCCccEEEEeCCCC--CC---------CH
Confidence 5 567877764321100000 00000000 00000000000000 0001123468999999932 21 35
Q ss_pred HHHHHHhccCc-ceEEEEEecCCCCceEEEEEEe
Q 011382 445 ADVQEECVKIG-PVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 445 EDVreEC~KfG-~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
++|++.|++|| .|.+|.|+.. ..|+++|.|..
T Consensus 135 ~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~ 167 (198)
T 1qm9_A 135 EDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGS 167 (198)
T ss_dssp HHHHHHHHHTTSCCCEEEESST-TSSCEEEECSS
T ss_pred HHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCC
Confidence 78999999999 9999999654 48999999876
No 20
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.71 E-value=1.3e-17 Score=153.74 Aligned_cols=160 Identities=13% Similarity=0.136 Sum_probs=105.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||+++|+++|+++|++||.|..... .|.-.+. +..+++++|||||+|.+.++|..|| .|||..|. |
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~--~~~~~v~-~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~-g 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ--APGNPVL-AVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ-G 77 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCS--SSSCSEE-EEEEETTTTEEEEEESCSHHHHHHG-GGTTEEET-T
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhccccc--CCCCceE-EeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEc-C
Confidence 4579999999999999999999999965441000 0000111 1134678999999999999999999 79999998 6
Q ss_pred CceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHH
Q 011382 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (487)
Q Consensus 367 ~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~ED 446 (487)
+ +|+|..+.......... .... ....+- .........++|+|+||-. .+ .+++
T Consensus 78 ~--~i~v~~~~~~~~~~~~~-~~~~-----------~~~~~~--~~~~~~~~~~~l~v~nl~~--~~---------~~~~ 130 (198)
T 2yh0_A 78 Q--SLKIRRPHDYQPLPGMS-ENPS-----------VYVPGV--VSTVVPDSAHKLFIGGLPN--YL---------NDDQ 130 (198)
T ss_dssp E--EEEEECCCCCCCCCCSS-SCSS-----------CCCTTS--SCCCSSCCCCEEEEECCCT--TC---------CHHH
T ss_pred c--eEEEeCCCCCCCCCCCc-CCCc-----------CCCCCC--ccCCCCCCCCEEEEeCCCC--CC---------CHHH
Confidence 4 67888776432111000 0000 000000 0011123467999999932 21 2578
Q ss_pred HHHHhccCcceEEEEEecC----CCCceEEEEEEee
Q 011382 447 VQEECVKIGPVDSVKVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 447 VreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~~ 478 (487)
|++.|++||.|.+|.|... .+.|+++|.|...
T Consensus 131 l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~ 166 (198)
T 2yh0_A 131 VKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDI 166 (198)
T ss_dssp HHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSS
T ss_pred HHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCH
Confidence 9999999999999999744 2479999999763
No 21
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=139.25 Aligned_cols=82 Identities=13% Similarity=0.196 Sum_probs=73.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCC-ccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhc-CCcccCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCG-IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLL-DGTPFRP 365 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G-~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~L-dg~~~~~ 365 (487)
+++|||+|||+++|+++|+++|++|| .|. .|+|++|+.||++||||||+|.+.++|..||+.| ++..|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~--------~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~- 71 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAR--------EVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL- 71 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCS--------BCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeE--------EEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC-
Confidence 35899999999999999999999999 798 8999999999999999999999999999999877 466787
Q ss_pred CCceeEEEEeccccc
Q 011382 366 DGKIPMSVTQAKFEQ 380 (487)
Q Consensus 366 G~~i~I~V~~A~~~~ 380 (487)
|+ +|+|..|..+.
T Consensus 72 gr--~i~V~~a~~~~ 84 (91)
T 2lxi_A 72 GQ--KVSMHYSDPKP 84 (91)
T ss_dssp TE--EEEEECCCSCC
T ss_pred CE--EEEEEEcCCCC
Confidence 64 68999887543
No 22
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=2.5e-17 Score=135.84 Aligned_cols=79 Identities=27% Similarity=0.256 Sum_probs=70.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCC--ccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCG--IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G--~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+|||+|||+++|+++|+++|++|| .|. .|+|++|+.+|+++|||||+|.+.++|..||+.|||..|. |
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~--------~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~-g 72 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDIL--------EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH-G 72 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCC--------CEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS-S
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceE--------EEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC-C
Confidence 4799999999999999999999999 888 9999999999999999999999999999999999999998 7
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+ +|+|..+..
T Consensus 73 r--~i~V~~~~~ 82 (90)
T 3p5t_L 73 Q--NPVVTPSNK 82 (90)
T ss_dssp C--CCEECCC--
T ss_pred E--EEEEEECCC
Confidence 6 468887764
No 23
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.69 E-value=2.1e-16 Score=154.31 Aligned_cols=124 Identities=18% Similarity=0.283 Sum_probs=104.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||+++|+++|+++|++||.|. .|+|.+ ++|||||.|.+.++|..||..|||..|.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~- 84 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPS--------EVFINR------DRGFGFIRLESRTLAEIAKAELDGTILK- 84 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCS--------EEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE--------EEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEEC-
Confidence 4568999999999999999999999999999 898854 4799999999999999999999999998
Q ss_pred CCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHH
Q 011382 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (487)
Q Consensus 366 G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~E 445 (487)
|+ .|+|..+.. .++|+|.|+-. .+ ..+
T Consensus 85 g~--~l~v~~a~~----------------------------------------~~~l~v~nl~~--~~---------t~~ 111 (261)
T 3sde_A 85 SR--PLRIRFATH----------------------------------------GAALTVKNLSP--VV---------SNE 111 (261)
T ss_dssp TE--ECEEEECCC----------------------------------------SSEEEEESCCT--TC---------CHH
T ss_pred Cc--eeEeeeccc----------------------------------------CCcccccCCCC--CC---------CHH
Confidence 64 577776541 25899999922 21 357
Q ss_pred HHHHHhccCcceEEEEEecC---CCCceEEEEEEe
Q 011382 446 DVQEECVKIGPVDSVKVMKL---NVEINCILIIFL 477 (487)
Q Consensus 446 DVreEC~KfG~V~~V~V~~~---~p~Gvv~V~f~~ 477 (487)
+|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 112 ~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 146 (261)
T 3sde_A 112 LLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAA 146 (261)
T ss_dssp HHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCC
Confidence 89999999999999998744 347899999865
No 24
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.69 E-value=1.6e-16 Score=143.13 Aligned_cols=139 Identities=15% Similarity=0.193 Sum_probs=101.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCC-CCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDP-ETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~-~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
+.+++|||+|||+++|+++|+++|++||.|.-.+ ..+.+-..+ .+++++|||||+|.++++|..|+ .|||..|.
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~----~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAV----QINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEE----EEETTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeee----EecCCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 4578999999999999999999999994332000 000011111 23566999999999999999999 79999998
Q ss_pred CCCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHH
Q 011382 365 PDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELE 444 (487)
Q Consensus 365 ~G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~ 444 (487)
|+ +|+|..+..... ....++|+++|+-. .+ .+
T Consensus 77 -g~--~i~v~~~~~~~~----------------------------------~~~~~~l~v~nlp~--~~---------t~ 108 (172)
T 2g4b_A 77 -GQ--SLKIRRPHDYQP----------------------------------LPGAHKLFIGGLPN--YL---------ND 108 (172)
T ss_dssp -TE--ECEEECCSSCCC----------------------------------CTTTTCEEEECCCT--TC---------CH
T ss_pred -Cc--eeeecCCcccCC----------------------------------CCCCCEEEEEcCCC--cC---------CH
Confidence 74 567776542110 11246899999932 22 25
Q ss_pred HHHHHHhccCcceEEEEEecCC----CCceEEEEEEe
Q 011382 445 ADVQEECVKIGPVDSVKVMKLN----VEINCILIIFL 477 (487)
Q Consensus 445 EDVreEC~KfG~V~~V~V~~~~----p~Gvv~V~f~~ 477 (487)
+||++.|++||.|.+|.|.... +.|+++|.|..
T Consensus 109 ~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 109 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp HHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred HHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 7899999999999999997542 47899999876
No 25
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=1.2e-16 Score=128.61 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=74.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCc
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~ 368 (487)
++|||+|||.++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..|+..|||..|. |+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~- 71 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYL--------SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN-GR- 71 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEE--------EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET-TE-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC-Cc-
Confidence 5899999999999999999999999999 9999999889999999999999999999999999999998 64
Q ss_pred eeEEEEecccc
Q 011382 369 IPMSVTQAKFE 379 (487)
Q Consensus 369 i~I~V~~A~~~ 379 (487)
+|+|..|...
T Consensus 72 -~l~v~~a~~~ 81 (83)
T 3md1_A 72 -PLRINWAAKL 81 (83)
T ss_dssp -ECEEEECCCC
T ss_pred -EEEEEecCcC
Confidence 6788888643
No 26
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.68 E-value=4.1e-17 Score=137.66 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcc----
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP---- 362 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~---- 362 (487)
.-.+|||+|||+++|+++|+++|++||.|... .|+|++|+.||++||||||+|.++++|..||+.|||..
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~------~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~ 81 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVN------NIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLK 81 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGG------GEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEE------EEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCce
Confidence 34589999999999999999999999964321 89999999999999999999999999999999999974
Q ss_pred cCCCCceeEEEEecc
Q 011382 363 FRPDGKIPMSVTQAK 377 (487)
Q Consensus 363 ~~~G~~i~I~V~~A~ 377 (487)
|. |+ +|.|+.|+
T Consensus 82 i~-Gr--~i~V~~Ak 93 (95)
T 2lkz_A 82 ID-GK--TIGVDFAK 93 (95)
T ss_dssp ET-TE--EEEEEECC
T ss_pred EC-CE--EEEEEEcc
Confidence 76 64 68888876
No 27
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=2.3e-17 Score=139.16 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=75.1
Q ss_pred CCcEEEEcCCCC------CCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCC
Q 011382 287 VNTHVYVTGLPD------DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG 360 (487)
Q Consensus 287 ~nt~VyV~nLP~------diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg 360 (487)
.+++|||+|||. ++++++|+++|++||.|. .|+|++|+.||++||||||+|.++++|..||+.|||
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~--------~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVV--------NMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEE--------EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEe--------EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 467999999999 999999999999999999 999999999999999999999999999999999999
Q ss_pred cccCCC-CceeEEEEecc
Q 011382 361 TPFRPD-GKIPMSVTQAK 377 (487)
Q Consensus 361 ~~~~~G-~~i~I~V~~A~ 377 (487)
..|. | + +|+|..|.
T Consensus 77 ~~~~-g~r--~l~V~~a~ 91 (100)
T 3ns6_A 77 KRLD-LKH--RLFLYTMK 91 (100)
T ss_dssp CBSS-SSC--BCEEEESH
T ss_pred cccC-CCe--EEEEEECc
Confidence 9998 6 5 57888876
No 28
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=129.95 Aligned_cols=81 Identities=22% Similarity=0.332 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||.++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..|++.|||..|. |
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g 75 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRIS--------DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG-G 75 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET-T
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEe--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC-C
Confidence 467999999999999999999999999999 9999999889999999999999999999999999999998 7
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+ +|+|..|..
T Consensus 76 ~--~l~v~~a~~ 85 (87)
T 3bs9_A 76 R--QIRTNWATR 85 (87)
T ss_dssp E--ECEEEEEC-
T ss_pred e--EEEEEecCC
Confidence 4 578887763
No 29
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.68 E-value=9.9e-17 Score=129.73 Aligned_cols=81 Identities=26% Similarity=0.332 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|++||.|. .|+|++|+.+|+++|||||+|.+.++|..|++.|||..|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 75 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT--------DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF- 75 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEE--------EEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 3567999999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEecc
Q 011382 366 DGKIPMSVTQAK 377 (487)
Q Consensus 366 G~~i~I~V~~A~ 377 (487)
|+ +|+|+.|+
T Consensus 76 g~--~l~v~~ak 85 (85)
T 3mdf_A 76 GR--TIRVNLAK 85 (85)
T ss_dssp TE--ECEEEECC
T ss_pred Cc--EEEEEEcC
Confidence 74 57887763
No 30
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=131.07 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=76.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+++|||+|||.++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||..|||..|. |
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g 74 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKID--------NIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA-G 74 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS-S
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEe--------EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC-C
Confidence 467999999999999999999999999999 9999999889999999999999999999999999999998 7
Q ss_pred CceeEEEEeccccc
Q 011382 367 GKIPMSVTQAKFEQ 380 (487)
Q Consensus 367 ~~i~I~V~~A~~~~ 380 (487)
+ +|+|..+....
T Consensus 75 ~--~l~V~~a~~~~ 86 (95)
T 2dnz_A 75 R--PMRVGHVTERL 86 (95)
T ss_dssp S--CCEEEESSCCC
T ss_pred c--EEEEEEccccc
Confidence 5 57888887543
No 31
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=132.34 Aligned_cols=83 Identities=22% Similarity=0.310 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||+++|+++|+++|++||.|. .|+|.+++.+|+++|||||+|.+.++|..||..|||..|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 76 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLS--------ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ- 76 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEE--------EEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEe--------EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 4567999999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..+...
T Consensus 77 g~--~l~V~~a~~~ 88 (99)
T 1whw_A 77 GR--MLHVLPSTIK 88 (99)
T ss_dssp SC--EEEEEECCCC
T ss_pred Cc--EEEEEEcCCC
Confidence 75 5788888754
No 32
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=129.62 Aligned_cols=81 Identities=25% Similarity=0.290 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||..|||..|.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 83 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIA--------DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD- 83 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEE--------EEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCee--------EEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 4567899999999999999999999999999 9999999989999999999999999999999999999998
Q ss_pred CCceeEEEEecc
Q 011382 366 DGKIPMSVTQAK 377 (487)
Q Consensus 366 G~~i~I~V~~A~ 377 (487)
|+ +|+|..|+
T Consensus 84 g~--~l~v~~a~ 93 (95)
T 2cqc_A 84 GR--RIRVSGPS 93 (95)
T ss_dssp TE--EEEEECCS
T ss_pred CE--EEEEEecC
Confidence 64 67888775
No 33
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=131.18 Aligned_cols=82 Identities=22% Similarity=0.381 Sum_probs=76.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeE-EEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRI-KIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~i-kl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
.+++|||+|||.++|+++|+++|++||.|. .| +|++|+.+|.++|||||+|.+.++|..||..|||..|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 74 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVIL--------QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC- 74 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBS--------SCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 467999999999999999999999999999 88 99999889999999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..|...
T Consensus 75 g~--~l~v~~a~~~ 86 (96)
T 1x5t_A 75 NR--PITVSYAFKK 86 (96)
T ss_dssp TE--ECEEEESCCC
T ss_pred CE--EEEEEEeccc
Confidence 64 6788888754
No 34
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.67 E-value=2.4e-16 Score=154.98 Aligned_cols=126 Identities=13% Similarity=0.135 Sum_probs=102.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
+.+++|||+|||+++|+++|+++|++||.|. .|+|++++ .| ++|||||+|.+.++|..||+ |||..|.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~~-~~g~afV~f~~~~~A~~A~~-~~~~~~~- 106 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPII--------HVDVADSL-KK-NFRFARIEFARYDGALAAIT-KTHKVVG- 106 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEE--------EEEEEECT-TS-SSEEEEEEESSHHHHHHHHT-TTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEECC-CC-CcEEEEEEECCHHHHHHHHH-hCCcEeC-
Confidence 4567999999999999999999999999999 99999985 34 58999999999999999996 8999998
Q ss_pred CCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHH
Q 011382 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (487)
Q Consensus 366 G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~E 445 (487)
|+ +|.|..+. .++|+|+|+- .++ ..+
T Consensus 107 g~--~i~v~~~~-----------------------------------------~~~l~v~nlp--~~~---------t~~ 132 (292)
T 2ghp_A 107 QN--EIIVSHLT-----------------------------------------ECTLWMTNFP--PSY---------TQR 132 (292)
T ss_dssp TE--ECEEEECC-----------------------------------------SCEEEEECCC--TTC---------CHH
T ss_pred Cc--EEEEEECC-----------------------------------------CCEEEEECCC--CCC---------CHH
Confidence 64 56666431 3589999992 222 357
Q ss_pred HHHHHhccCc-ceEEEEEecC---CCCceEEEEEEe
Q 011382 446 DVQEECVKIG-PVDSVKVMKL---NVEINCILIIFL 477 (487)
Q Consensus 446 DVreEC~KfG-~V~~V~V~~~---~p~Gvv~V~f~~ 477 (487)
+|++.|++|| .|.+|.|... .+.|+++|.|..
T Consensus 133 ~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~ 168 (292)
T 2ghp_A 133 NIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTS 168 (292)
T ss_dssp HHHHHHHHTTCCCCEEECC-------CCEEEEECSS
T ss_pred HHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECC
Confidence 8999999999 9999999753 368999999875
No 35
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.67 E-value=4.3e-16 Score=131.25 Aligned_cols=84 Identities=20% Similarity=0.344 Sum_probs=75.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+++|||+|||.++|+++|+++|++||.|. .|+|++++ +|+++|||||+|.+.++|..||+.|||..|.+|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg 84 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVID--------ECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG 84 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 467999999999999999999999999999 99999996 899999999999999999999999999999833
Q ss_pred CceeEEEEecccc
Q 011382 367 GKIPMSVTQAKFE 379 (487)
Q Consensus 367 ~~i~I~V~~A~~~ 379 (487)
...+|+|..|...
T Consensus 85 ~~~~l~V~~a~~~ 97 (105)
T 2dnh_A 85 ASSSLVVKFADTD 97 (105)
T ss_dssp CSSCCEEEESCSS
T ss_pred CCccEEEEECccC
Confidence 2125788888754
No 36
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=133.05 Aligned_cols=82 Identities=29% Similarity=0.425 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|++||.|. .|+|++|+.+|.++|||||+|.+.++|..||..|||..|.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 91 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIK--------NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM- 91 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeE--------EEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC-
Confidence 3567999999999999999999999999999 9999999999999999999999999999999999999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|+ +|+|..|..
T Consensus 92 g~--~l~V~~a~~ 102 (106)
T 1p27_B 92 GQ--PISVDWCFV 102 (106)
T ss_dssp SS--BCEEEESEE
T ss_pred Cc--EEEEEeecC
Confidence 75 578888764
No 37
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=130.65 Aligned_cols=81 Identities=26% Similarity=0.419 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||+.|||..|.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 84 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVV--------KVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF- 84 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEE--------EEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE--------EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC-
Confidence 3457899999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEecc
Q 011382 366 DGKIPMSVTQAK 377 (487)
Q Consensus 366 G~~i~I~V~~A~ 377 (487)
|+ +|+|..|+
T Consensus 85 g~--~l~v~~ak 94 (94)
T 2e5h_A 85 GR--VIKASIAI 94 (94)
T ss_dssp TE--EEEEEECC
T ss_pred Cc--EEEEEecC
Confidence 64 67888763
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.66 E-value=1.7e-16 Score=137.10 Aligned_cols=78 Identities=19% Similarity=0.324 Sum_probs=71.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.++|||+|||+++|+++|+++|++||.|. .|+|++|+ +.+||||||+|.+.++|..||+.|||..|. |+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~-g~ 73 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNIL--------SCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLN-DR 73 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEET-TE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEE--------EEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEEC-CE
Confidence 57899999999999999999999999999 99999984 568999999999999999999999999998 74
Q ss_pred ceeEEEEeccc
Q 011382 368 KIPMSVTQAKF 378 (487)
Q Consensus 368 ~i~I~V~~A~~ 378 (487)
+|+|..+..
T Consensus 74 --~i~V~~a~~ 82 (115)
T 4f25_A 74 --KVFVGRFKS 82 (115)
T ss_dssp --ECEEEESSC
T ss_pred --EEEEEECCC
Confidence 678888764
No 39
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=133.11 Aligned_cols=83 Identities=25% Similarity=0.426 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||+++|+++|+++|++||.|. .|+|++++.+|.++|||||+|.+.++|..||..|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 83 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVV--------NTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY- 83 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEE--------EEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC-
Confidence 4567999999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..|...
T Consensus 84 g~--~l~v~~a~~~ 95 (105)
T 1x5u_A 84 GK--PIRVNKASAH 95 (105)
T ss_dssp SC--BCEEEETTTT
T ss_pred Ce--EEEEEECCCC
Confidence 75 5788888754
No 40
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=132.66 Aligned_cols=84 Identities=29% Similarity=0.366 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||..|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 83 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSIS--------RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD- 83 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEE--------EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE--------EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC-
Confidence 3567999999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEeccccc
Q 011382 366 DGKIPMSVTQAKFEQ 380 (487)
Q Consensus 366 G~~i~I~V~~A~~~~ 380 (487)
|+ +|+|..+....
T Consensus 84 g~--~l~v~~a~~~~ 96 (103)
T 2cq0_A 84 HL--ILNVEWAKPST 96 (103)
T ss_dssp TE--ECEEEESSCCC
T ss_pred Cc--EEEEEECCCCC
Confidence 64 67898887543
No 41
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.66 E-value=2e-16 Score=131.52 Aligned_cols=81 Identities=25% Similarity=0.365 Sum_probs=75.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
+++|||+|||.++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||+.|||..|. |+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~ 72 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVI--------NLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG-SR 72 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET-TE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEE--------EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC-Ce
Confidence 46999999999999999999999999999 9999999889999999999999999999999999999998 64
Q ss_pred ceeEEEEecccc
Q 011382 368 KIPMSVTQAKFE 379 (487)
Q Consensus 368 ~i~I~V~~A~~~ 379 (487)
.|+|..|...
T Consensus 73 --~l~V~~a~~~ 82 (96)
T 2x1f_A 73 --FLKCGYSSNS 82 (96)
T ss_dssp --ECEEEECSCS
T ss_pred --EEEEEEcCCC
Confidence 6889888754
No 42
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.66 E-value=5.7e-16 Score=151.66 Aligned_cols=122 Identities=18% Similarity=0.228 Sum_probs=101.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+++|||+|||.++|+++|+++|++|| |. .|++ |+++|||||+|.+.++|..|+..|||..|. |
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~--------~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g 84 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LK--------YCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLR-E 84 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EE--------EEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEET-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CE--------EEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeC-C
Confidence 457999999999999999999999999 88 7777 567999999999999999999999999998 6
Q ss_pred CceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHH
Q 011382 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (487)
Q Consensus 367 ~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~ED 446 (487)
+ +|+|..+. ..++|+++|+- .++ ..++
T Consensus 85 ~--~i~v~~~~----------------------------------------~~~~l~v~nlp--~~~---------t~~~ 111 (284)
T 3smz_A 85 R--ELSVQLQP----------------------------------------TDALLCVANLP--PSL---------TQQQ 111 (284)
T ss_dssp E--ECEEEECC----------------------------------------CSCEEEEESCC--TTC---------CHHH
T ss_pred e--EEEEEecC----------------------------------------CCCEEEEcCCC--CcC---------CHHH
Confidence 4 56665321 13589999992 222 3578
Q ss_pred HHHHhccCcceEEEEEecCC----CCceEEEEEEe
Q 011382 447 VQEECVKIGPVDSVKVMKLN----VEINCILIIFL 477 (487)
Q Consensus 447 VreEC~KfG~V~~V~V~~~~----p~Gvv~V~f~~ 477 (487)
|++.|++||.|.+|.|.... +.|+++|.|..
T Consensus 112 l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 146 (284)
T 3smz_A 112 FEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMK 146 (284)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred HHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECC
Confidence 99999999999999986432 47899999865
No 43
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.9e-16 Score=129.95 Aligned_cols=81 Identities=25% Similarity=0.448 Sum_probs=74.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||.++|+++|+++|++||.|. .|+|+.++ +|+++|||||+|.+.++|..||+.|||..|. |
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g 85 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVK--------DLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIK-E 85 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESS-S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeE--------EEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEEC-C
Confidence 457899999999999999999999999999 99999997 9999999999999999999999999999998 7
Q ss_pred CceeEEEEecccc
Q 011382 367 GKIPMSVTQAKFE 379 (487)
Q Consensus 367 ~~i~I~V~~A~~~ 379 (487)
+ +|+|..+...
T Consensus 86 ~--~l~v~~a~~~ 96 (100)
T 2do4_A 86 N--IIKVAISNSG 96 (100)
T ss_dssp C--EEEEEECCCC
T ss_pred E--EEEEEECCCC
Confidence 5 5788888753
No 44
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=130.88 Aligned_cols=82 Identities=22% Similarity=0.373 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|++||.|. .|+|++|+.+|+++|||||+|.+.++|..||+ |||..|.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~- 77 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVT--------EVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM- 77 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEE--------EEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC-
Confidence 3567999999999999999999999999999 99999998899999999999999999999998 9999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..+...
T Consensus 78 g~--~l~V~~a~~~ 89 (99)
T 2dgs_A 78 GK--KVEVKRAEPR 89 (99)
T ss_dssp SC--BCEEEECCCC
T ss_pred Ce--EEEEEECCCC
Confidence 75 5788888754
No 45
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.66 E-value=1.3e-16 Score=126.54 Aligned_cols=75 Identities=23% Similarity=0.361 Sum_probs=69.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCce
Q 011382 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKI 369 (487)
Q Consensus 290 ~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i 369 (487)
+|||+|||+++|+++|+++|++||.|. .|+|.+++.+|+++|||||+|.+.++|..|++ |||..|. |+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~-g~-- 68 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVD--------DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN-NK-- 68 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCS--------EECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS-SC--
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEE--------EEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC-CE--
Confidence 599999999999999999999999999 99999998899999999999999999999998 9999998 76
Q ss_pred eEEEEec
Q 011382 370 PMSVTQA 376 (487)
Q Consensus 370 ~I~V~~A 376 (487)
+|+|..|
T Consensus 69 ~l~v~~A 75 (75)
T 2mss_A 69 MVECKKA 75 (75)
T ss_dssp CCEEECC
T ss_pred EEEEEeC
Confidence 4677654
No 46
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=132.00 Aligned_cols=83 Identities=25% Similarity=0.340 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. .|+|++++.+|.++|||||+|.+.++|..||+.|||..|.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 80 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQIS--------EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD- 80 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCC--------EEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE--------EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 3567999999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..|...
T Consensus 81 g~--~l~v~~a~~~ 92 (102)
T 1x5s_A 81 GR--QIRVDQAGKS 92 (102)
T ss_dssp SC--CCEEEEEECC
T ss_pred Ce--EEEEEECCCC
Confidence 76 4688877653
No 47
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.66 E-value=3.2e-16 Score=127.82 Aligned_cols=80 Identities=29% Similarity=0.456 Sum_probs=74.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.++|||+|||.++|+++|+++|++||.|. .|+|.+++.+|+++|||||+|.+.++|..|+ .|||..|. |+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~-g~ 75 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVN--------RVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR-GR 75 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEE--------EEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET-TE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC-Cc
Confidence 46899999999999999999999999999 9999999889999999999999999999999 89999998 64
Q ss_pred ceeEEEEecccc
Q 011382 368 KIPMSVTQAKFE 379 (487)
Q Consensus 368 ~i~I~V~~A~~~ 379 (487)
+|+|..+...
T Consensus 76 --~l~V~~a~~~ 85 (89)
T 3ucg_A 76 --QIKVIPKRTN 85 (89)
T ss_dssp --ECEEEETTTT
T ss_pred --EEEEEEccCC
Confidence 6788888753
No 48
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.66 E-value=4.3e-16 Score=126.92 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||+ +++..|.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~- 78 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVV--------DCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD- 78 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEE--------EEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC-
Confidence 3567999999999999999999999999999 99999998899999999999999999999997 5888898
Q ss_pred CCceeEEEEec
Q 011382 366 DGKIPMSVTQA 376 (487)
Q Consensus 366 G~~i~I~V~~A 376 (487)
|+ +|+|+.|
T Consensus 79 g~--~i~v~~A 87 (87)
T 3s7r_A 79 GR--VIDPKKA 87 (87)
T ss_dssp TE--EEEEEEC
T ss_pred CE--EEEEEeC
Confidence 74 5788765
No 49
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.66 E-value=3.6e-16 Score=133.89 Aligned_cols=82 Identities=26% Similarity=0.391 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||.++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||+.|||..|.
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~- 94 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIE--------SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA- 94 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEE--------EEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 3567999999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|+ +|+|..+..
T Consensus 95 g~--~l~V~~a~~ 105 (108)
T 2jrs_A 95 GR--PMKVGHVTE 105 (108)
T ss_dssp SS--CCEEECSCS
T ss_pred CE--EEEEEEccc
Confidence 75 578887763
No 50
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=4.3e-16 Score=133.49 Aligned_cols=83 Identities=23% Similarity=0.343 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||.++|+++|+++|++||.|. .|+|++++.+|.++|||||+|.+.++|..||+.|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 83 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRIS--------DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG- 83 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 3567999999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ .|+|..|...
T Consensus 84 g~--~l~V~~a~~~ 95 (115)
T 2dgo_A 84 GR--QIRTNWATRK 95 (115)
T ss_dssp TE--ECEEEESSCC
T ss_pred CE--EEEEEEccCC
Confidence 64 6889888754
No 51
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=132.99 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||+++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||..|||..|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 81 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVG--------DVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD- 81 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT-
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 4567999999999999999999999999999 9999999989999999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..|...
T Consensus 82 g~--~l~V~~a~~~ 93 (103)
T 2dnm_A 82 GR--ELRVQVARYG 93 (103)
T ss_dssp TB--CCEEEECSSC
T ss_pred Cc--EEEEEECCcC
Confidence 75 5788888754
No 52
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-16 Score=136.34 Aligned_cols=78 Identities=19% Similarity=0.334 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+++|||+|||+++|+++|+++|++||.|. .|+|++|+. |++||||||+|.+.++|..||. +||..|. |
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~--------~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~-g 78 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVL--------NIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYK-E 78 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEE--------EEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCT-T
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEE--------EEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEEC-C
Confidence 456899999999999999999999999999 999999976 9999999999999999999998 8999998 7
Q ss_pred CceeEEEEecc
Q 011382 367 GKIPMSVTQAK 377 (487)
Q Consensus 367 ~~i~I~V~~A~ 377 (487)
+. |.|..+.
T Consensus 79 r~--l~V~~~~ 87 (103)
T 1s79_A 79 TD--LLILFKD 87 (103)
T ss_dssp TT--CEEEEHH
T ss_pred EE--EEEEEch
Confidence 65 5666544
No 53
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.65 E-value=5.2e-16 Score=133.20 Aligned_cols=82 Identities=20% Similarity=0.360 Sum_probs=76.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||.++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||+.|||..|. |
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g 94 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVV--------SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG-M 94 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCS--------EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET-T
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC-C
Confidence 457899999999999999999999999999 9999999889999999999999999999999999999998 6
Q ss_pred CceeEEEEecccc
Q 011382 367 GKIPMSVTQAKFE 379 (487)
Q Consensus 367 ~~i~I~V~~A~~~ 379 (487)
+ +|+|..+...
T Consensus 95 ~--~l~V~~a~~~ 105 (115)
T 2cpz_A 95 K--RLKVQLKRSK 105 (115)
T ss_dssp E--ECEEECCCCS
T ss_pred E--EEEEEEcCCC
Confidence 4 6788888754
No 54
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2e-16 Score=125.59 Aligned_cols=76 Identities=20% Similarity=0.275 Sum_probs=70.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCc
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~ 368 (487)
++|||+|||+++|+++|+++|++||.|. .|+|.+++.+|+++|||||+|.+.++|..|+..|+ ..|. |+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~-g~- 69 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVK--------ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD-SK- 69 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCC--------CEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS-SC-
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC-CE-
Confidence 5799999999999999999999999999 99999998899999999999999999999999999 8888 76
Q ss_pred eeEEEEec
Q 011382 369 IPMSVTQA 376 (487)
Q Consensus 369 i~I~V~~A 376 (487)
+|+|..|
T Consensus 70 -~l~v~~a 76 (77)
T 1uaw_A 70 -TIDPKVA 76 (77)
T ss_dssp -CCEEEEC
T ss_pred -EEEEEec
Confidence 4677765
No 55
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.65 E-value=3.1e-16 Score=143.48 Aligned_cols=81 Identities=25% Similarity=0.275 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC--ccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCG--IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G--~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
..++|||+|||+++|+++|+++|++|| .|. .|+|++|+.+|++||||||+|.+.++|..||..|||..|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~--------~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVV--------ELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEE--------EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 457999999999999999999999999 888 9999999999999999999999999999999999999998
Q ss_pred CCCceeEEEEeccc
Q 011382 365 PDGKIPMSVTQAKF 378 (487)
Q Consensus 365 ~G~~i~I~V~~A~~ 378 (487)
|+ +|+|..|..
T Consensus 126 -Gr--~l~V~~a~~ 136 (156)
T 3n9u_C 126 -GE--KVDVRPATR 136 (156)
T ss_dssp -TE--ECEEEECCH
T ss_pred -Ce--EeEEEEcCC
Confidence 74 678988864
No 56
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=131.97 Aligned_cols=83 Identities=25% Similarity=0.307 Sum_probs=76.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||+++|+++|+++|++||.|. .|+|++|+.+|+++|||||+|.+.++|..||+.|||..|. |
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g 81 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDIT--------DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF-G 81 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCC--------CEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEE--------EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-C
Confidence 467899999999999999999999999999 9999999889999999999999999999999999999998 6
Q ss_pred CceeEEEEeccccc
Q 011382 367 GKIPMSVTQAKFEQ 380 (487)
Q Consensus 367 ~~i~I~V~~A~~~~ 380 (487)
+ +|+|..+....
T Consensus 82 ~--~l~V~~a~~~~ 93 (102)
T 2cqb_A 82 R--TIRVNLAKPMR 93 (102)
T ss_dssp E--EEEEEECCCCC
T ss_pred c--EEEEEeCCCCC
Confidence 4 68888887543
No 57
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.65 E-value=4.4e-16 Score=131.40 Aligned_cols=87 Identities=24% Similarity=0.391 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||.++|+++|+++|++||.|. .|+|++|+.+|+++|||||+|.+.++|..||..|||..+..
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 82 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIY--------ELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLP 82 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCC--------EEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 3567999999999999999999999999999 99999999899999999999999999999999999998721
Q ss_pred CCceeEEEEeccccc
Q 011382 366 DGKIPMSVTQAKFEQ 380 (487)
Q Consensus 366 G~~i~I~V~~A~~~~ 380 (487)
|...+|+|..|....
T Consensus 83 ~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 83 GMNRPIQVKPADSES 97 (106)
T ss_dssp TCSSCCEEEECCCCS
T ss_pred CCCceEEEEECCccc
Confidence 211367888887543
No 58
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.3e-16 Score=130.33 Aligned_cols=84 Identities=24% Similarity=0.275 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCC---CCCccceEEEEeCCHHHHHHHHHhcCCcc
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKE---TGMKKGDALVTYLKEPSVALATQLLDGTP 362 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~---tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~ 362 (487)
..+++|||+|||+++|+++|+++|++||.|. .|+|.+++. ||+++|||||+|.+.++|..||..|||..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~ 74 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIK--------SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT 74 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe
Confidence 3467899999999999999999999999999 999999876 66999999999999999999999999999
Q ss_pred cCCCCceeEEEEeccccc
Q 011382 363 FRPDGKIPMSVTQAKFEQ 380 (487)
Q Consensus 363 ~~~G~~i~I~V~~A~~~~ 380 (487)
|. |+ +|+|..+....
T Consensus 75 ~~-g~--~l~V~~a~~~~ 89 (98)
T 2cpf_A 75 VD-GH--KLEVRISERAT 89 (98)
T ss_dssp ET-TE--ECEEECSSCSS
T ss_pred eC-Ce--EEEEEEccCCC
Confidence 98 64 67898887543
No 59
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.4e-16 Score=130.78 Aligned_cols=81 Identities=26% Similarity=0.446 Sum_probs=75.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||.++|+++|+++|++||.|. .|+|++++.+|.++|||||+|.+.++|..||+.|||..|. |
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~--------~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g 77 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVV--------SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS-G 77 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCS--------EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS-S
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCee--------EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC-C
Confidence 356899999999999999999999999999 9999999889999999999999999999999999999998 7
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+ +|+|..|..
T Consensus 78 ~--~l~v~~a~~ 87 (104)
T 1p1t_A 78 R--ALRVDNAAS 87 (104)
T ss_dssp S--CBEEEETTC
T ss_pred c--EEEEEeCCC
Confidence 5 578888874
No 60
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6e-16 Score=129.02 Aligned_cols=86 Identities=14% Similarity=0.272 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||+++|+++|+++|++||.|.. .|+|++|+.+|+++|||||+|.+.++|..||+.|||..|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 78 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVM-------SVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP- 78 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCC-------EEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES-
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcce-------EEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC-
Confidence 35679999999999999999999999998762 6899999889999999999999999999999999999998
Q ss_pred CCce--eEEEEecccc
Q 011382 366 DGKI--PMSVTQAKFE 379 (487)
Q Consensus 366 G~~i--~I~V~~A~~~ 379 (487)
|+.+ +|+|..|...
T Consensus 79 g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 79 GATPAKRFKLNYATYS 94 (99)
T ss_dssp SCSSCEECCEEETTCC
T ss_pred CCCcceeEEEeecCCC
Confidence 7652 2788888754
No 61
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.5e-16 Score=132.20 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcC------
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD------ 359 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ld------ 359 (487)
...++|||+|||+++|+++|+++|++||.|. .|+|++|+.+|.++|||||+|.+.++|..||..||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 84 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLK--------YVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGG 84 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccC
Confidence 3567899999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CcccCCCCceeEEEEecccc
Q 011382 360 GTPFRPDGKIPMSVTQAKFE 379 (487)
Q Consensus 360 g~~~~~G~~i~I~V~~A~~~ 379 (487)
|..|. |+ +|+|..+...
T Consensus 85 ~~~~~-g~--~l~v~~a~~~ 101 (111)
T 1x4h_A 85 GLKLD-GR--QLKVDLAVTR 101 (111)
T ss_dssp CEESS-SC--EEEEECCCCC
T ss_pred CcEEc-CE--EEEEEECCCC
Confidence 99998 75 5788888754
No 62
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7.3e-16 Score=128.26 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. .++++.++.+|+++|||||+|.+.++|..||+.|||..|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~--------~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~- 83 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIP--------GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG- 83 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCT--------TTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc--------ceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC-
Confidence 3567899999999999999999999999998 7888888889999999999999999999999999999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|+ +|+|..+..
T Consensus 84 g~--~l~V~~a~~ 94 (98)
T 2cqp_A 84 SR--KVKLVLGSG 94 (98)
T ss_dssp TE--ECEEEESSC
T ss_pred Ce--EEEEEEcCC
Confidence 64 578887763
No 63
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.64 E-value=7.6e-16 Score=133.48 Aligned_cols=82 Identities=22% Similarity=0.361 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||.++|+++|+++|++||.|. .|+|+.++ +|+++|||||+|.+.++|..||+.|||..|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~- 74 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPIS--------EVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLH- 74 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCS--------EEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 4567999999999999999999999999999 99999997 9999999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..|...
T Consensus 75 g~--~l~V~~a~~~ 86 (116)
T 2fy1_A 75 GK--AIKVEQAKKP 86 (116)
T ss_dssp SS--BCEEEECCCS
T ss_pred CE--EEEEEECCCC
Confidence 75 5788888753
No 64
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.64 E-value=4.9e-16 Score=133.75 Aligned_cols=80 Identities=19% Similarity=0.353 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||+.|||..|.
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 108 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVI--------SAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG- 108 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEE--------EEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 4567999999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEec
Q 011382 366 DGKIPMSVTQA 376 (487)
Q Consensus 366 G~~i~I~V~~A 376 (487)
|+ +|+|+.+
T Consensus 109 g~--~l~V~~a 117 (118)
T 2khc_A 109 TK--RLKVQLK 117 (118)
T ss_dssp TE--ECCEEEC
T ss_pred CE--EEEEEec
Confidence 75 5677765
No 65
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.64 E-value=7.5e-16 Score=130.18 Aligned_cols=80 Identities=21% Similarity=0.406 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||+.+|+++|+++|++||.|. .|+|++++ +|+++|||||+|.+.++|..||..|||..|.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 96 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLK--------KAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLD- 96 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 4578999999999999999999999999999 99999997 9999999999999999999999999999998
Q ss_pred CCceeEEEEecc
Q 011382 366 DGKIPMSVTQAK 377 (487)
Q Consensus 366 G~~i~I~V~~A~ 377 (487)
|+ +|+|..|.
T Consensus 97 g~--~l~V~~a~ 106 (107)
T 3ulh_A 97 GR--PMNIQLVT 106 (107)
T ss_dssp TE--ECEEEEEC
T ss_pred Cc--EEEEEEeC
Confidence 74 57787764
No 66
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.64 E-value=4.5e-16 Score=128.64 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=73.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
+++|||+|||+++|+++|+++|++||.|. .+.++.++.+|+++|||||+|.++++|..||+.|||..|. |+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~-gr 85 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIP--------GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG-SR 85 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCT--------TCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET-TE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcc--------ceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC-Cc
Confidence 46899999999999999999999999999 7888888889999999999999999999999999999998 74
Q ss_pred ceeEEEEecc
Q 011382 368 KIPMSVTQAK 377 (487)
Q Consensus 368 ~i~I~V~~A~ 377 (487)
+|+|..+.
T Consensus 86 --~l~v~~a~ 93 (95)
T 2ek1_A 86 --KVKLSGPS 93 (95)
T ss_dssp --ECEEECCC
T ss_pred --EEEEEecc
Confidence 57887764
No 67
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=8.3e-16 Score=129.72 Aligned_cols=83 Identities=20% Similarity=0.339 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEec-CCCCCccceEEEEeCCHHHHHHHHHhc-CCccc
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVD-KETGMKKGDALVTYLKEPSVALATQLL-DGTPF 363 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~D-k~tG~~KG~AfV~F~~~esa~~Ai~~L-dg~~~ 363 (487)
...++|||+|||.++|+++|+++|++||.|. .|+|+++ +.+|+++|||||+|.+.++|..||..| ||..|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELK--------TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeE--------EEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE
Confidence 3567899999999999999999999999999 9999998 789999999999999999999999999 99999
Q ss_pred CCCCceeEEEEecccc
Q 011382 364 RPDGKIPMSVTQAKFE 379 (487)
Q Consensus 364 ~~G~~i~I~V~~A~~~ 379 (487)
. |+ +|+|..|...
T Consensus 85 ~-g~--~l~v~~a~~~ 97 (107)
T 2cph_A 85 Y-GR--RLVLEWADSE 97 (107)
T ss_dssp S-SC--BCEEEECCCC
T ss_pred C-CC--EEEEEeCCCC
Confidence 8 75 5788888754
No 68
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.63 E-value=3.8e-16 Score=126.87 Aligned_cols=81 Identities=26% Similarity=0.334 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCC-ccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGM-KKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~-~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..++|||+|||.++|+++|+++|++||.|. .|+|.+++.++. ++|||||+|.+.++|..|+..|||..|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 73 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIK--------MIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID- 73 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEE--------EEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC-
Confidence 457999999999999999999999999999 999999987766 9999999999999999999999999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|+ +|+|+.+..
T Consensus 74 g~--~l~v~~a~~ 84 (88)
T 4a8x_A 74 GQ--EITATAVLA 84 (88)
T ss_dssp TE--ECEEEEECC
T ss_pred Ce--EEEEEECCC
Confidence 74 578887753
No 69
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.63 E-value=7.7e-16 Score=127.20 Aligned_cols=80 Identities=26% Similarity=0.439 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. .|+|.+++ +|+++|||||+|.+.++|..||+.|||..|.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 83 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLT--------KVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLY- 83 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE--------EEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 3567999999999999999999999999999 99999996 5999999999999999999999999999998
Q ss_pred CCceeEEEEecc
Q 011382 366 DGKIPMSVTQAK 377 (487)
Q Consensus 366 G~~i~I~V~~A~ 377 (487)
|+ +|+|..|.
T Consensus 84 g~--~l~V~~a~ 93 (95)
T 2ywk_A 84 GR--PINVSGPS 93 (95)
T ss_dssp TE--ECEEECCC
T ss_pred CC--EEEEEEcC
Confidence 64 67888765
No 70
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.63 E-value=6e-16 Score=131.58 Aligned_cols=83 Identities=27% Similarity=0.401 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|++||.|. .|+|.+++.+|.++|||||+|.+.++|..||..|||..|.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 94 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIK--------NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM- 94 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 3567999999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..+...
T Consensus 95 g~--~l~V~~a~~~ 106 (110)
T 1oo0_B 95 GQ--TIQVDWCFVK 106 (110)
T ss_dssp TE--ECEEEESEES
T ss_pred Cc--EEEEEEcccC
Confidence 64 6788888643
No 71
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=135.46 Aligned_cols=83 Identities=24% Similarity=0.340 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||.++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||..|||..|.
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 110 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIE--------SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL- 110 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEE--------EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 4567999999999999999999999999999 9999999989999999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..|...
T Consensus 111 g~--~l~v~~a~~~ 122 (139)
T 1u6f_A 111 NK--RLKVALAASG 122 (139)
T ss_dssp SC--EEEEEESSCC
T ss_pred Ce--EEEEEECCCC
Confidence 75 5788888754
No 72
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.8e-16 Score=129.41 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||+++|+++|+++|++||.|. .|+|+++ +|.++|||||+|.+.++|..||..|||..|. |
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g 82 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTIT--------SAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA-T 82 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEE--------EEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSS-S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeC-C
Confidence 567899999999999999999999999999 9999998 8999999999999999999999999999998 7
Q ss_pred CceeEEEEeccccc
Q 011382 367 GKIPMSVTQAKFEQ 380 (487)
Q Consensus 367 ~~i~I~V~~A~~~~ 380 (487)
+ +|+|..+....
T Consensus 83 ~--~l~V~~a~~~~ 94 (103)
T 2d9p_A 83 K--PLYVALAQRKE 94 (103)
T ss_dssp S--BCEEEECSSCC
T ss_pred c--EEEEEEecccc
Confidence 5 57888887543
No 73
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.63 E-value=2.3e-16 Score=139.14 Aligned_cols=83 Identities=17% Similarity=0.289 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCc----c
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT----P 362 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~----~ 362 (487)
.+++|||+|||+++|+++|+++|++||.|... .|+|++|+.+|++||||||+|.+. +|..||..|||. .
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~------~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSS------NVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTT------TEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccee------eEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 45799999999999999999999999999711 399999998999999999999999 999999999999 9
Q ss_pred cCCCCceeEEEEecccc
Q 011382 363 FRPDGKIPMSVTQAKFE 379 (487)
Q Consensus 363 ~~~G~~i~I~V~~A~~~ 379 (487)
|. |+ +|+|..|...
T Consensus 95 ~~-gr--~l~V~~a~~~ 108 (131)
T 2m2b_A 95 ID-GK--TINVEFAKGS 108 (131)
T ss_dssp GG-GC--CCCCEECCCS
T ss_pred CC-CE--EEEEEECCCC
Confidence 98 76 4677777643
No 74
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.3e-16 Score=127.94 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||+++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||+.|||..|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 73 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIV--------STKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ- 73 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEE--------EEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe-
Confidence 3567999999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEe
Q 011382 366 DGKIPMSVTQ 375 (487)
Q Consensus 366 G~~i~I~V~~ 375 (487)
|+. |+|++
T Consensus 74 g~~--~~~~~ 81 (85)
T 1x4e_A 74 AQM--AKQSG 81 (85)
T ss_dssp EES--CCSSC
T ss_pred eEE--EeecC
Confidence 653 45443
No 75
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.62 E-value=8.9e-16 Score=133.59 Aligned_cols=83 Identities=29% Similarity=0.421 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||+++|+++|+++|++||.|. .|+|+.++.+|.++|||||+|.+.++|..||+.|||..|.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 90 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIK--------NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM- 90 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC-
Confidence 3577999999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ .|+|..|...
T Consensus 91 g~--~l~v~~a~~~ 102 (126)
T 3ex7_B 91 GQ--PISVDWCFVR 102 (126)
T ss_dssp SS--BCEEEESEES
T ss_pred Ce--EEEEEEecCC
Confidence 75 5788887653
No 76
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=2.1e-15 Score=126.91 Aligned_cols=81 Identities=23% Similarity=0.303 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++|| |. .|+|++|+.+|+++|||||+|.+.++|..|| .|||..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~- 81 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IR--------SVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG- 81 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EE--------EEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET-
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ce--------EEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC-
Confidence 3567999999999999999999999998 88 8999999989999999999999999999999 79999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..+...
T Consensus 82 g~--~l~V~~a~~~ 93 (103)
T 2dng_A 82 DR--SLRVDIAEGR 93 (103)
T ss_dssp TE--ECEEEECCCC
T ss_pred Ce--EEEEEEecCC
Confidence 64 6788888754
No 77
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.9e-16 Score=131.62 Aligned_cols=82 Identities=22% Similarity=0.285 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||..||+ .|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~- 84 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIE--------EAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID- 84 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEE--------EEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCee--------EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC-
Confidence 3567999999999999999999999999999 999999998999999999999999999999999998 787
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..|...
T Consensus 85 g~--~l~V~~a~~~ 96 (116)
T 2cqd_A 85 GR--KANVNLAYLG 96 (116)
T ss_dssp TE--ECEEEESTTT
T ss_pred CE--EEEEEEcccC
Confidence 64 6788888643
No 78
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.4e-16 Score=129.58 Aligned_cols=81 Identities=23% Similarity=0.279 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-CCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcc-c
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSK-CGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP-F 363 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk-~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~-~ 363 (487)
..+++|||+|||+++|+++|+++|++ ||.|. .|+|++|+ +|+++|||||+|.+.++|..||..|||.. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~--------~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 77 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCR--------GGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL 77 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEE--------EEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeE--------EEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc
Confidence 35678999999999999999999999 99999 99999997 99999999999999999999999999999 8
Q ss_pred CCCCceeEEEEeccc
Q 011382 364 RPDGKIPMSVTQAKF 378 (487)
Q Consensus 364 ~~G~~i~I~V~~A~~ 378 (487)
. |+ +|+|..+..
T Consensus 78 ~-g~--~l~v~~a~~ 89 (104)
T 2dhg_A 78 G-SK--PVRLSVAIP 89 (104)
T ss_dssp S-SS--CCCCCBCCC
T ss_pred C-CE--eEEEEEccC
Confidence 8 75 467777754
No 79
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.62 E-value=2.1e-16 Score=129.54 Aligned_cols=78 Identities=33% Similarity=0.425 Sum_probs=71.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCc
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~ 368 (487)
++|||+|||.++|+++|+++|++||.|. .|+|.+++.+|+++|||||+|.+.+ |..|+..|||..|. |+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~-g~- 70 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVF--------NVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM-GR- 70 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCS--------EEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS-SS-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEE--------EEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC-Ce-
Confidence 5899999999999999999999999999 9999999989999999999999999 99999999999998 76
Q ss_pred eeEEEEeccc
Q 011382 369 IPMSVTQAKF 378 (487)
Q Consensus 369 i~I~V~~A~~ 378 (487)
+|+|..|..
T Consensus 71 -~l~V~~a~~ 79 (90)
T 2ki2_A 71 -TIRVTEANP 79 (90)
T ss_dssp -SCSEEEC--
T ss_pred -EEEEEEcCC
Confidence 467887764
No 80
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.62 E-value=4e-16 Score=126.01 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=64.2
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCc
Q 011382 288 NTHVYVTGLPDDV------TVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (487)
Q Consensus 288 nt~VyV~nLP~di------TeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~ 361 (487)
+++|||+|||.++ |+++|+++|++||.|. .|+|. +.+|+++|||||+|.+.++|..||..|||.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~--------~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT--------NDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEE--------EEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeE--------EEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 3689999999999 7799999999999999 89887 358999999999999999999999999999
Q ss_pred ccCCCC
Q 011382 362 PFRPDG 367 (487)
Q Consensus 362 ~~~~G~ 367 (487)
.|. |+
T Consensus 71 ~~~-g~ 75 (81)
T 2krb_A 71 KLD-KQ 75 (81)
T ss_dssp CCS-SS
T ss_pred ccC-Cc
Confidence 998 76
No 81
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=127.82 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCC-CCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKET-GMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~t-G~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..++|||+|||+++|+++|+++|++|| |. .|+|++++.+ |+++|||||+|.+.++|..|| .|||..|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~--------~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~- 82 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-IS--------AVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG- 82 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EE--------EEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET-
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ce--------EEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC-
Confidence 457999999999999999999999999 98 8999999887 999999999999999999999 89999998
Q ss_pred CCceeEEEEeccccc
Q 011382 366 DGKIPMSVTQAKFEQ 380 (487)
Q Consensus 366 G~~i~I~V~~A~~~~ 380 (487)
|+ +|+|..|....
T Consensus 83 g~--~l~V~~a~~~~ 95 (104)
T 1wi8_A 83 NK--RIRVDVADQAQ 95 (104)
T ss_dssp TE--ECEEEECCCCC
T ss_pred Cc--EEEEEEccCCC
Confidence 64 67888887543
No 82
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.62 E-value=1.7e-15 Score=131.88 Aligned_cols=81 Identities=21% Similarity=0.380 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|++||.|. .|+|.+++ +|+++|||||+|.+.++|..||..|||..|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 102 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLK--------KAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD- 102 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCS--------EEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 5678999999999999999999999999999 99999997 9999999999999999999999999999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|+ +|+|..|..
T Consensus 103 g~--~l~V~~a~~ 113 (124)
T 2kt5_A 103 GR--PMDIQLVAS 113 (124)
T ss_dssp SC--EEEEEEECC
T ss_pred Cc--EEEEEEeCC
Confidence 75 578888764
No 83
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.61 E-value=3.8e-16 Score=131.35 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecC-CCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDK-ETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk-~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
...++|||+|||.++|+++|+++|++|| |. .|+|++++ .+|+++|||||+|.+.++|..|| .|||..|.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~--------~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~ 86 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-IS--------AVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 86 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EE--------EEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-Ce--------EEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 4678999999999999999999999999 99 99999997 58999999999999999999999 79999998
Q ss_pred CCCceeEEEEeccc
Q 011382 365 PDGKIPMSVTQAKF 378 (487)
Q Consensus 365 ~G~~i~I~V~~A~~ 378 (487)
|+ .|+|..|..
T Consensus 87 -g~--~l~V~~a~~ 97 (100)
T 2j76_E 87 -NR--RIRVDVADQ 97 (100)
T ss_dssp -TB--CCCCEECCC
T ss_pred -Ce--EEEEEeccC
Confidence 75 467777764
No 84
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.8e-16 Score=131.55 Aligned_cols=80 Identities=24% Similarity=0.368 Sum_probs=74.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||.++|+++|+++|++||.|. .|+|++|+.+|+++|||||+|.+.++|..|| .|||..|. |
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~-g 93 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVR--------DVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL-G 93 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEe--------EEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC-C
Confidence 456999999999999999999999999999 9999999989999999999999999999999 89999998 6
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+ .|+|..+..
T Consensus 94 ~--~l~V~~a~~ 103 (114)
T 2cq4_A 94 V--PIIVQASQA 103 (114)
T ss_dssp E--EEEEEEHHH
T ss_pred e--EEEEEecCC
Confidence 4 688888763
No 85
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=1.2e-15 Score=135.02 Aligned_cols=82 Identities=24% Similarity=0.259 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||+++|+++|+++|++||.|. .|+|++|+.+|+++|||||+|.+.++|..||..|||..|.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~- 114 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIA--------DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD- 114 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEE--------EEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 4567899999999999999999999999999 9999999999999999999999999999999999999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|+ +|+|..+..
T Consensus 115 g~--~l~V~~a~~ 125 (129)
T 2kxn_B 115 GR--RIRVDFSIT 125 (129)
T ss_dssp SS--CCEESCCSS
T ss_pred CE--EEEEEEecC
Confidence 75 568877764
No 86
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=128.24 Aligned_cols=82 Identities=28% Similarity=0.439 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
+.+++|||+|||.++|+++|+++|++||.|. .|+|++++ +|+++|||||+|.+.++|..||..|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~--------~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 82 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVV--------RADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLF- 82 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 4567999999999999999999999999999 99999996 7999999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..+...
T Consensus 83 g~--~l~v~~a~~~ 94 (114)
T 2do0_A 83 DR--PMHVKMDERA 94 (114)
T ss_dssp TE--ECEEEECSCC
T ss_pred CC--EEEEEEcccC
Confidence 64 6788887643
No 87
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=131.02 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCcc-ccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGII-KEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I-~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..++|||+|||+++|+++|+++|++||.| . .|+|++|+ +|+++|||||+|.+.++|..||.. |+..|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~--------~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~- 82 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDEN--------AVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLN- 82 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCST--------TEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEET-
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCC--------eEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccC-
Confidence 45789999999999999999999999999 7 89999997 999999999999999999999986 999998
Q ss_pred CCceeEEEEecc
Q 011382 366 DGKIPMSVTQAK 377 (487)
Q Consensus 366 G~~i~I~V~~A~ 377 (487)
|+ .|+|..|.
T Consensus 83 gr--~i~v~~a~ 92 (114)
T 2cpy_A 83 GR--EAFVHVVT 92 (114)
T ss_dssp TE--EEEEEEEC
T ss_pred Ce--EEEEEECC
Confidence 64 67888876
No 88
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.4e-15 Score=129.26 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=75.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||+++|+++|+++|++||.|. .|+|++|+.+|+++|||||+|.+.++|..||.. |+..|. |
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~-g 95 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLT--------DCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID-G 95 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCS--------EEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC-C
Confidence 346899999999999999999999999999 999999998999999999999999999999987 999998 6
Q ss_pred CceeEEEEeccccc
Q 011382 367 GKIPMSVTQAKFEQ 380 (487)
Q Consensus 367 ~~i~I~V~~A~~~~ 380 (487)
+ +|+|..+....
T Consensus 96 ~--~l~V~~a~~~~ 107 (116)
T 1x4b_A 96 R--VVEPKRAVARE 107 (116)
T ss_dssp E--EEEEECCSSCC
T ss_pred E--EEEEEECCCCc
Confidence 4 68898887543
No 89
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=1.8e-15 Score=124.29 Aligned_cols=81 Identities=20% Similarity=0.369 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|++||.|. .|+|.++ +|+++|||||+|.+.++|..||+.|||..|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~--------~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~- 74 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVL--------YADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLS- 74 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEE--------EEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBT-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 3567999999999999999999999999999 9999885 7999999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..+...
T Consensus 75 g~--~l~v~~a~~~ 86 (92)
T 2dgv_A 75 GR--EIDVRIDRNA 86 (92)
T ss_dssp TB--CCCCEECSCC
T ss_pred Cc--EEEEEEcCCC
Confidence 75 5677777643
No 90
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=132.21 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. .+.++.+..+|+++|||||+|.+.++|..||. |||..|.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~--------~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~- 92 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVE--------DSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG- 92 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCT--------TTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcc--------ceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC-
Confidence 3567999999999999999999999999998 65556666799999999999999999999999 9999998
Q ss_pred CCceeEEEEecc
Q 011382 366 DGKIPMSVTQAK 377 (487)
Q Consensus 366 G~~i~I~V~~A~ 377 (487)
|+ .|.|..|.
T Consensus 93 gr--~i~V~~a~ 102 (124)
T 1wel_A 93 NR--FIQVHPIT 102 (124)
T ss_dssp TS--CBEEEEEC
T ss_pred Cc--EEEEEECC
Confidence 76 47888776
No 91
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=3.1e-15 Score=135.21 Aligned_cols=82 Identities=28% Similarity=0.324 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|++||.|. .|+|++++.+|.++|||||+|.+.++|..||..|||..|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 107 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIK--------KIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD- 107 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 3567999999999999999999999999999 9999999999999999999999999999999999999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|+ +|+|..|..
T Consensus 108 g~--~l~V~~a~~ 118 (156)
T 1h2v_Z 108 DR--IIRTDWDAG 118 (156)
T ss_dssp TE--ECEEEEESC
T ss_pred Ce--EEEEEECCC
Confidence 64 678888874
No 92
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=128.59 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||.. |+..|.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~- 83 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVV--------DCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD- 83 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEE--------EEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC-
Confidence 3567999999999999999999999999999 999999988999999999999999999999998 999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..+...
T Consensus 84 g~--~l~V~~a~~~ 95 (105)
T 2dh8_A 84 GR--NIDPKPCTPR 95 (105)
T ss_dssp TE--EEBCCCSCCS
T ss_pred CE--EEEEEEccCC
Confidence 64 6788877643
No 93
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.60 E-value=1.5e-15 Score=136.91 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. .|+|++|+.+|+++|||||+|.+.++|..||+.|||..|.
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~--------~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 138 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG--------DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD- 138 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEE--------EEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 3567999999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..|...
T Consensus 139 g~--~l~v~~a~~~ 150 (158)
T 2kn4_A 139 GR--ELRVQMARYG 150 (158)
T ss_dssp SS--EEEEEEECCS
T ss_pred Ce--EEEEEECCCC
Confidence 75 6788888754
No 94
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=128.46 Aligned_cols=82 Identities=22% Similarity=0.309 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCc-cccCCCCCCCeEEEE-ecCCCCCccceEEEEeCCHHHHHHHHHhcC--Ccc
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGI-IKEDPETKKPRIKIY-VDKETGMKKGDALVTYLKEPSVALATQLLD--GTP 362 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~-I~~d~~t~~p~ikl~-~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ld--g~~ 362 (487)
.+++|||+|||+++|+++|+++|++||. |. .|.|+ .++.+|+++|||||+|.+.++|..||..|| +..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~--------~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~ 78 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVL--------DVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQ 78 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEE--------EEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCce--------EEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCce
Confidence 5679999999999999999999999998 99 89998 888899999999999999999999999996 588
Q ss_pred cCCCCceeEEEEecccc
Q 011382 363 FRPDGKIPMSVTQAKFE 379 (487)
Q Consensus 363 ~~~G~~i~I~V~~A~~~ 379 (487)
|. |+ +|+|..|...
T Consensus 79 ~~-g~--~l~V~~a~~~ 92 (109)
T 2dis_A 79 LW-GH--QIAVDWAEPE 92 (109)
T ss_dssp BT-TB--CCEEEESCSS
T ss_pred ec-CC--eEEEEEcCCC
Confidence 98 75 5788888754
No 95
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.6e-15 Score=121.43 Aligned_cols=80 Identities=21% Similarity=0.223 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++| .|. .|+|+++ .+|+++|||||+|.+.++|..||. |||..|.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~--------~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~- 75 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPV--------AIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMG- 75 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCS--------EEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEET-
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-Cce--------EEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeC-
Confidence 356799999999999999999999999 888 8999999 799999999999999999999999 9999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ .|+|..|...
T Consensus 76 gr--~i~v~~a~~~ 87 (91)
T 2dgw_A 76 GR--YIEVFREKSG 87 (91)
T ss_dssp TE--EEEEEEESSC
T ss_pred Cc--EEEEEECCcC
Confidence 64 6788887643
No 96
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.60 E-value=2.3e-15 Score=130.58 Aligned_cols=80 Identities=33% Similarity=0.489 Sum_probs=74.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.++|||+|||.++|+++|+++|++||.|. .|+|++|+.+|.++|||||+|.+.++|..|| .|||..|. |+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~-g~ 105 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSIN--------RITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR-GR 105 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEE--------EEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET-TE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC-Ce
Confidence 46899999999999999999999999999 9999999889999999999999999999999 79999998 64
Q ss_pred ceeEEEEecccc
Q 011382 368 KIPMSVTQAKFE 379 (487)
Q Consensus 368 ~i~I~V~~A~~~ 379 (487)
.|+|..+...
T Consensus 106 --~l~V~~a~~~ 115 (124)
T 2jwn_A 106 --TIKVLPKRTN 115 (124)
T ss_dssp --ECEEEESSCC
T ss_pred --EEEEEECCCC
Confidence 6788888754
No 97
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.59 E-value=1.7e-15 Score=146.63 Aligned_cols=81 Identities=26% Similarity=0.240 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC--ccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCG--IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G--~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
..++|||+|||+++|+++|+++|++|| .|. .|+|++|+.+|++||||||+|.+.++|..||+.|||..|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~--------~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDIL--------EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEE--------EEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 567999999999999999999999999 899 9999999999999999999999999999999999999998
Q ss_pred CCCceeEEEEeccc
Q 011382 365 PDGKIPMSVTQAKF 378 (487)
Q Consensus 365 ~G~~i~I~V~~A~~ 378 (487)
|+ +|+|..|..
T Consensus 139 -Gr--~l~V~~a~~ 149 (229)
T 3q2s_C 139 -GQ--NPVVTPVNK 149 (229)
T ss_dssp -TB--CCEEEECCH
T ss_pred -CE--EeEEEECCC
Confidence 75 578888863
No 98
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.59 E-value=3.1e-15 Score=130.04 Aligned_cols=79 Identities=24% Similarity=0.388 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCc---cccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcc
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGI---IKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP 362 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~---I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~ 362 (487)
...++|||+|||+++|+++|+++|++||. |. .|+|++|+. |+++|||||+|.+.++|..||+ |||..
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~--------~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~ 84 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVA--------GVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRES 84 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGG--------GEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCce--------eEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCe
Confidence 34578999999999999999999999999 78 899999975 9999999999999999999999 99999
Q ss_pred cCCCCceeEEEEecc
Q 011382 363 FRPDGKIPMSVTQAK 377 (487)
Q Consensus 363 ~~~G~~i~I~V~~A~ 377 (487)
|. |+ .|+|..+.
T Consensus 85 ~~-gr--~i~V~~a~ 96 (118)
T 2db1_A 85 MG-HR--YIEVFKSH 96 (118)
T ss_dssp ET-TE--EEEEEEEC
T ss_pred EC-Ce--EEEEEECC
Confidence 98 64 57888775
No 99
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.59 E-value=9.9e-16 Score=121.17 Aligned_cols=75 Identities=23% Similarity=0.357 Sum_probs=68.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCce
Q 011382 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKI 369 (487)
Q Consensus 290 ~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i 369 (487)
+|||+|||+++|+++|+++|++||.|. .|+|.+++.+|.++|||||+|.+.++|..||+ +++..|. |+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~-g~~- 69 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVE--------SIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVG-LSK- 69 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCS--------EECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBT-TBC-
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeEC-CEE-
Confidence 599999999999999999999999999 99999998899999999999999999999998 5899998 764
Q ss_pred eEEEEec
Q 011382 370 PMSVTQA 376 (487)
Q Consensus 370 ~I~V~~A 376 (487)
|+|..|
T Consensus 70 -l~v~~a 75 (75)
T 1iqt_A 70 -CEIKVA 75 (75)
T ss_dssp -CCEEEC
T ss_pred -EEEEEC
Confidence 566543
No 100
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.59 E-value=2.2e-15 Score=132.65 Aligned_cols=80 Identities=25% Similarity=0.323 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||.++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||+.|||..|.
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 131 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT--------DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF- 131 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEE--------EEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 3567999999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEec
Q 011382 366 DGKIPMSVTQA 376 (487)
Q Consensus 366 G~~i~I~V~~A 376 (487)
|+ +|+|..|
T Consensus 132 g~--~l~v~~A 140 (140)
T 2ku7_A 132 GR--TIRVNLA 140 (140)
T ss_dssp TE--EEEEEC-
T ss_pred CE--EEEEEeC
Confidence 74 5777754
No 101
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.59 E-value=2.5e-15 Score=128.75 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||.++|+++|+++|++||.|. .|+|++|+.+|+++|||||+|.+.++|..||..+ |..|. |
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~-g 93 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVK--------ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD-S 93 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeE--------EEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC-C
Confidence 567899999999999999999999999999 9999999889999999999999999999999976 58887 6
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+ .|+|..+..
T Consensus 94 ~--~l~V~~a~~ 103 (109)
T 2rs2_A 94 K--TIDPKVAFP 103 (109)
T ss_dssp E--EEEEEECCC
T ss_pred E--EEEEEEccC
Confidence 4 678888764
No 102
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.59 E-value=1.7e-15 Score=128.55 Aligned_cols=79 Identities=20% Similarity=0.240 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCC------CHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCC
Q 011382 287 VNTHVYVTGLPDDV------TVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG 360 (487)
Q Consensus 287 ~nt~VyV~nLP~di------TeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg 360 (487)
..++|||+|||+.+ |+++|+++|++||.|. .|+|.+ .+|+++|||||+|.+.++|..||..|||
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~--------~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g 83 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT--------NDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADG 83 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEE--------EEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSS
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEE--------EEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 46799999999999 7899999999999999 898873 6899999999999999999999999999
Q ss_pred cccCCCCceeEEEEecc
Q 011382 361 TPFRPDGKIPMSVTQAK 377 (487)
Q Consensus 361 ~~~~~G~~i~I~V~~A~ 377 (487)
..|. |+. +|+|..|.
T Consensus 84 ~~~~-g~~-~l~V~~a~ 98 (105)
T 2nlw_A 84 YKLD-KQH-TFRVNLFT 98 (105)
T ss_dssp EECS-TTC-EEEEECSC
T ss_pred cccC-CCc-eEEEEEcc
Confidence 9998 751 57888875
No 103
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.59 E-value=2.7e-15 Score=134.71 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCc---cccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcc
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGI---IKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP 362 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~---I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~ 362 (487)
...++|||+|||+++|+++|+++|++||. |. .|+|++|+. |+++|||||+|.+.++|..||+ |||..
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~--------~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~ 111 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAA--------GVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRES 111 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSST--------TEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCcee--------EEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCE
Confidence 35679999999999999999999999999 77 899999975 9999999999999999999999 99999
Q ss_pred cCCCCceeEEEEecc
Q 011382 363 FRPDGKIPMSVTQAK 377 (487)
Q Consensus 363 ~~~G~~i~I~V~~A~ 377 (487)
|. |+ .|+|..+.
T Consensus 112 l~-gr--~i~V~~a~ 123 (136)
T 2hgl_A 112 MG-HR--YIEVFKSH 123 (136)
T ss_dssp SS-SS--EEEEEECC
T ss_pred EC-CE--EEEEEECC
Confidence 98 75 57888775
No 104
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=125.65 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCc
Q 011382 286 KVNTHVYVTGLPDDVTVEEMV----EVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~----e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~ 361 (487)
..+++|||+|||+++|+++|+ ++|++||.|. .|+|++|+.+ +|||||+|.+.++|..||..|||.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~--------~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~ 75 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVK--------SVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRY 75 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE--------EEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEE--------EEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCC
Confidence 456899999999999999999 9999999999 9999998654 999999999999999999999999
Q ss_pred ccCCCCceeEEEEecccc
Q 011382 362 PFRPDGKIPMSVTQAKFE 379 (487)
Q Consensus 362 ~~~~G~~i~I~V~~A~~~ 379 (487)
.|. |+ +|+|..|...
T Consensus 76 ~~~-gr--~l~V~~a~~~ 90 (96)
T 2dgx_A 76 KIG-SK--KILVSLATGA 90 (96)
T ss_dssp EET-TE--EEEEEECCCS
T ss_pred EEC-Ce--EEEEEEcCCC
Confidence 998 74 6889888643
No 105
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=8.7e-17 Score=138.46 Aligned_cols=90 Identities=37% Similarity=0.644 Sum_probs=80.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+++|||+|||.++|+++|+++|++||.|..+..++.|.|+|++|+.+|+++|||||+|.+.++|..||..|||..|. |
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g 84 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS-G 84 (116)
Confidence 457899999999999999999999999999666666777999999889999999999999999999999999999998 7
Q ss_pred CceeEEEEecccc
Q 011382 367 GKIPMSVTQAKFE 379 (487)
Q Consensus 367 ~~i~I~V~~A~~~ 379 (487)
+ +|+|..|...
T Consensus 85 ~--~l~V~~a~~~ 95 (116)
T 2lcw_A 85 N--PIKVSFATRR 95 (116)
Confidence 5 5788877643
No 106
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.4e-15 Score=132.05 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=68.9
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCC----HHH----HHHHHH
Q 011382 289 THVYVTGL----PDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLK----EPS----VALATQ 356 (487)
Q Consensus 289 t~VyV~nL----P~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~----~es----a~~Ai~ 356 (487)
+.|||+|| |+.+|+.+|+++|++||.|. .|+++.|+.||+++|||||.|.+ ++. |..||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~--------~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEIS--------HFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCS--------EEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 68999999 99999999999999999999 99999999999999999999995 433 899988
Q ss_pred --hcCCcccCCCCceeEEEEecc
Q 011382 357 --LLDGTPFRPDGKIPMSVTQAK 377 (487)
Q Consensus 357 --~Ldg~~~~~G~~i~I~V~~A~ 377 (487)
.|||..|. |+ +|+|..-.
T Consensus 75 ~~~lng~~I~-Gr--~irV~ln~ 94 (136)
T 2j8a_A 75 KHESSGCFIM-GF--KFEVILNK 94 (136)
T ss_dssp HTTTTCEEET-TE--EEEEEECC
T ss_pred HhhhcCCeec-Cc--EEEEEECc
Confidence 89999998 75 56777554
No 107
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.6e-15 Score=125.98 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++|| |. .|+|++|+ +|++||||||+|.+.++|..||+ +|+..|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~--------~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~- 80 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PM--------RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQ- 80 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CS--------EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ce--------EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeEC-
Confidence 3567999999999999999999999999 66 79999997 99999999999999999999996 7999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|+ .|+|..+..
T Consensus 81 gr--~i~V~~~~~ 91 (102)
T 1wez_A 81 HR--YVELFLNST 91 (102)
T ss_dssp SS--CCEEEEECC
T ss_pred Cc--EEEEEECCC
Confidence 76 467776654
No 108
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.9e-15 Score=125.77 Aligned_cols=81 Identities=15% Similarity=0.274 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||+++|+++|+++|++||.|. .|+|++++ +|.++|||||+|.+.++|..||..|||..|. |
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-~ 93 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVI--------STRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIK-T 93 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEE--------EEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCC-C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEc-C
Confidence 457999999999999999999999999999 99999997 9999999999999999999999999999995 2
Q ss_pred Cc------eeEEEEecc
Q 011382 367 GK------IPMSVTQAK 377 (487)
Q Consensus 367 ~~------i~I~V~~A~ 377 (487)
+. .+|.|..|.
T Consensus 94 ~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 94 PPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp CTTSCCCSSCBEEEECC
T ss_pred CccccCCCCceeEEccC
Confidence 21 357888776
No 109
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.58 E-value=7.7e-15 Score=125.66 Aligned_cols=79 Identities=28% Similarity=0.380 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|++||.|. .|+|+++ +.++|||||+|.+.++|..||..|||..|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 73 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIR--------QIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVS- 73 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 3567999999999999999999999999999 9999875 567999999999999999999999999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|+ .|+|..+..
T Consensus 74 g~--~l~v~~a~~ 84 (115)
T 3lqv_A 74 NR--YLVVLYYNA 84 (115)
T ss_dssp SC--BCEEEECCH
T ss_pred Ce--EEEEEEecC
Confidence 75 578888874
No 110
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3e-15 Score=126.83 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCe-EEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPR-IKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~-ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
...++|||+|||+++|+++|+++|++||.|. . |+|++| .+|+++|||||+|.++++|..||.. |+..|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~--------~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~ 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVP--------NGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIG 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEE--------EEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcc--------eeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhC
Confidence 3567999999999999999999999999998 6 899998 7999999999999999999999996 999998
Q ss_pred CCCceeEEEEecc
Q 011382 365 PDGKIPMSVTQAK 377 (487)
Q Consensus 365 ~G~~i~I~V~~A~ 377 (487)
|+ .|+|..+.
T Consensus 83 -gr--~i~v~~~~ 92 (104)
T 1wg5_A 83 -HR--YIEIFKSS 92 (104)
T ss_dssp -SS--CCEEEEEC
T ss_pred -Cc--EEEEEECC
Confidence 76 46777765
No 111
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.9e-15 Score=123.58 Aligned_cols=81 Identities=20% Similarity=0.291 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. .|+|++++ +.++|||||+|.+.++|..||..|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 81 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKIL--------DVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVE- 81 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEE--------EEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 3567999999999999999999999999999 99999985 349999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..+...
T Consensus 82 g~--~l~v~~a~~~ 93 (103)
T 2cq3_A 82 GR--KIEVNNATAR 93 (103)
T ss_dssp TE--ECEEEECCSS
T ss_pred CE--EEEEEEcccC
Confidence 64 6788888754
No 112
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.8e-15 Score=123.63 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||+++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..||. ++..|. |
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~-g 82 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVL--------MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID-G 82 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEE--------EEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET-T
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC-C
Confidence 456899999999999999999999999999 99999998899999999999999999999998 577887 6
Q ss_pred CceeEEEEecccc
Q 011382 367 GKIPMSVTQAKFE 379 (487)
Q Consensus 367 ~~i~I~V~~A~~~ 379 (487)
+ +|+|..+...
T Consensus 83 ~--~l~v~~a~~~ 93 (103)
T 2cqg_A 83 R--WCDCKLPNSK 93 (103)
T ss_dssp E--EEEEECCCTT
T ss_pred e--EEEEEecCCC
Confidence 4 6788888754
No 113
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.3e-15 Score=128.03 Aligned_cols=84 Identities=20% Similarity=0.287 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHH---HHhhcCCccccCCCCCCCeEEEEecCCCC---CccceEEEEeCCHHHHHHHHHhcC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMV---EVFSKCGIIKEDPETKKPRIKIYVDKETG---MKKGDALVTYLKEPSVALATQLLD 359 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~---e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG---~~KG~AfV~F~~~esa~~Ai~~Ld 359 (487)
...++|||+|||+++|+++|+ ++|++||.|. .|+|.+++.+| +++|||||+|.+.++|..||+.||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~--------~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln 84 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH--------KVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN 84 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEE--------EEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEE--------EEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC
Confidence 356789999999999999999 9999999999 99999987654 566999999999999999999999
Q ss_pred CcccCCCCceeEEEEeccccc
Q 011382 360 GTPFRPDGKIPMSVTQAKFEQ 380 (487)
Q Consensus 360 g~~~~~G~~i~I~V~~A~~~~ 380 (487)
|..|. |+ +|+|..|..+.
T Consensus 85 g~~~~-gr--~l~V~~a~~k~ 102 (111)
T 2cpi_A 85 NVVVD-GR--TLKASLGTTKY 102 (111)
T ss_dssp TEEET-TE--EEEEESCCCCS
T ss_pred CCEEC-CE--EEEEEeccccc
Confidence 99998 74 68999887543
No 114
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6e-15 Score=123.94 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. .|+|++|+ +.++|||||+|.+.++|..||..|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 81 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCK--------SCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKIL- 81 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEE--------EEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEET-
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEe--------EEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcC-
Confidence 3567999999999999999999999999999 99999985 447999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..+...
T Consensus 82 g~--~l~V~~a~~~ 93 (103)
T 2cqi_A 82 GK--EVKVNWATTP 93 (103)
T ss_dssp TE--EEEEEECCCT
T ss_pred CC--eEEEEECCCC
Confidence 64 6888888753
No 115
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.58 E-value=2.9e-15 Score=127.58 Aligned_cols=79 Identities=24% Similarity=0.379 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCc---cccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcc
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGI---IKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP 362 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~---I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~ 362 (487)
...++|||+|||+++|+++|+++|+.||. |. .|+|++|+. |+++|||||+|.+.++|..||. |||..
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~--------~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~ 78 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGEN--------GIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMY 78 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTT--------TEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcc--------eEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcce
Confidence 45679999999999999999999999998 78 899999975 9999999999999999999999 99999
Q ss_pred cCCCCceeEEEEecc
Q 011382 363 FRPDGKIPMSVTQAK 377 (487)
Q Consensus 363 ~~~G~~i~I~V~~A~ 377 (487)
|. |+ .|+|..+.
T Consensus 79 ~~-gr--~i~V~~a~ 90 (107)
T 2lmi_A 79 MG-QR--YVEVYEIN 90 (107)
T ss_dssp SS-SS--CCCCEECC
T ss_pred eC-Ce--EEEEEECC
Confidence 97 76 46777765
No 116
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.58 E-value=4.7e-15 Score=135.66 Aligned_cols=83 Identities=27% Similarity=0.401 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||+.+|+++|+++|++||.|. .|.|++++.+|.++|||||+|.+.++|..||..|||..|.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 140 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIK--------NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM- 140 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEE--------EEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 3567999999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..|...
T Consensus 141 g~--~l~V~~a~~~ 152 (165)
T 1rk8_A 141 GQ--TIQVDWCFVK 152 (165)
T ss_dssp TE--ECEEEESEEC
T ss_pred CE--EEEEEEecCC
Confidence 64 6788888753
No 117
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.57 E-value=2e-15 Score=134.46 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||+++|+++|+++|++||.|. .|+|.+++.+|+++|||||+|.+.++|..||..|||..|.
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~- 115 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG--------DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD- 115 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCS--------EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 3567899999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..+...
T Consensus 116 g~--~l~V~~a~~~ 127 (135)
T 2lea_A 116 GR--ELRVQMARYG 127 (135)
T ss_dssp SS--CCEEEECCCC
T ss_pred CE--EEEEEECCCC
Confidence 75 5788888754
No 118
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.6e-15 Score=127.54 Aligned_cols=83 Identities=22% Similarity=0.292 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|++||.|. .+.+..+..+|+++|||||+|.+.++|..||..|||..|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--------~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~- 93 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKK--------GPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY- 93 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSS--------SSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcc--------ceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 3567999999999999999999999999996 3333333238999999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..|...
T Consensus 94 g~--~l~v~~a~~~ 105 (115)
T 2cpx_A 94 GK--ILVIEFGKNK 105 (115)
T ss_dssp SC--BCEEEECCCC
T ss_pred Cc--EEEEEEccCC
Confidence 75 5788888754
No 119
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.9e-15 Score=126.22 Aligned_cols=79 Identities=20% Similarity=0.290 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||.++|+++|+++|++||.|. .|+|.+++ +.++|||||+|.+.++|..|+..|||..|. |
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~-g 96 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKIL--------DVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVE-G 96 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCS--------CEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEET-T
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEE--------EEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEEC-C
Confidence 567999999999999999999999999999 89999984 569999999999999999999999999998 7
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+ +|+|..|..
T Consensus 97 ~--~l~V~~a~~ 106 (109)
T 2err_A 97 R--KIEVNNATA 106 (109)
T ss_dssp E--ECEEEECCC
T ss_pred E--EEEEEECCC
Confidence 4 678888763
No 120
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=9.6e-16 Score=128.41 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||+++|+++|+++|++||.|. . .+++++.+|+++|||||+|.+.++|..||+ |||..|. |
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~-g 84 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKN--------D-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF-G 84 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHH--------T-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcc--------e-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC-C
Confidence 467999999999999999999999999998 5 456666789999999999999999999999 9999998 7
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+ +|+|..|..
T Consensus 85 ~--~l~V~~a~~ 94 (101)
T 1fj7_A 85 N--EIKLEKPKG 94 (101)
T ss_dssp B--CCEEECCSC
T ss_pred c--EEEEEEcCC
Confidence 5 578888764
No 121
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=122.96 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||.++|+++|+++|++||.|. .|+|.. +++++|||||+|.+.++|..||+.||+..|.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 87 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIR--------DIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD- 87 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 3567999999999999999999999999999 888854 4678999999999999999999999999998
Q ss_pred CCceeEEEEeccccc
Q 011382 366 DGKIPMSVTQAKFEQ 380 (487)
Q Consensus 366 G~~i~I~V~~A~~~~ 380 (487)
|+ +|+|..+....
T Consensus 88 g~--~l~V~~a~~~~ 100 (109)
T 1x4a_A 88 GY--RLRVEFPRSGR 100 (109)
T ss_dssp TE--ECEEECCCCCC
T ss_pred Ce--EEEEEEcccCC
Confidence 64 67898887543
No 122
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.54 E-value=4.2e-15 Score=136.66 Aligned_cols=81 Identities=23% Similarity=0.332 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||+++|+++|+++|++||.|. .|+|++|+.+|.++|||||.|.+.++|..||.. +|..|. |
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~-G 172 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIE--------VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN-G 172 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEET-T
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeE--------EEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEEC-C
Confidence 456999999999999999999999999999 999999988999999999999999999999985 899998 7
Q ss_pred CceeEEEEecccc
Q 011382 367 GKIPMSVTQAKFE 379 (487)
Q Consensus 367 ~~i~I~V~~A~~~ 379 (487)
+ .|.|..|..+
T Consensus 173 ~--~i~v~~a~~k 183 (196)
T 1l3k_A 173 H--NCEVRKALSK 183 (196)
T ss_dssp E--ECEEEECC--
T ss_pred E--EEEEEecCCh
Confidence 4 5788888753
No 123
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.7e-14 Score=119.51 Aligned_cols=81 Identities=26% Similarity=0.395 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|+.|+ .|++++++.+|+++|||||+|.+.++|..||..|||..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~-----------~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 80 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV-----------RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID- 80 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS-----------EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe-----------EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC-
Confidence 3567899999999999999999999773 4678888889999999999999999999999999999998
Q ss_pred CCceeEEEEeccccc
Q 011382 366 DGKIPMSVTQAKFEQ 380 (487)
Q Consensus 366 G~~i~I~V~~A~~~~ 380 (487)
|+ +|+|..|....
T Consensus 81 g~--~l~V~~a~~~~ 93 (102)
T 2fc8_A 81 GN--KVTLDWAKPKG 93 (102)
T ss_dssp TE--ECEEEECCCCC
T ss_pred Ce--EEEEEEecCCC
Confidence 64 67898887543
No 124
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.54 E-value=1.9e-14 Score=128.26 Aligned_cols=81 Identities=30% Similarity=0.486 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||.++|+++|+++|++||.|. .+++++++.+|.++|||||+|.+.++|..|++.|||..|. |
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g 157 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRII--------TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS-G 157 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT-T
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEe--------EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC-C
Confidence 456899999999999999999999999999 9999999889999999999999999999999999999998 8
Q ss_pred CceeEEEEec
Q 011382 367 GKIPMSVTQA 376 (487)
Q Consensus 367 ~~i~I~V~~A 376 (487)
+.++|+|..|
T Consensus 158 ~~~~i~v~~A 167 (167)
T 1fxl_A 158 ATEPITVKFA 167 (167)
T ss_dssp CSSCCEEEEC
T ss_pred CccceEEEeC
Confidence 7777888765
No 125
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=6.9e-15 Score=123.36 Aligned_cols=78 Identities=23% Similarity=0.424 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+++|||+|||+++|+++|+++|++||.|. .|+|++|+ +|+++|||||+|.+.++|..||. +|..|. |
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~-g 75 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVK--------EVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFH-G 75 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEET-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeE--------EEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeEC-C
Confidence 457999999999999999999999999999 99999997 99999999999999999999998 999998 6
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+ +|.|..+..
T Consensus 76 ~--~l~v~~a~~ 85 (102)
T 2xs2_A 76 K--KLKLGPAIR 85 (102)
T ss_dssp E--ECEEEEEEE
T ss_pred E--EEEEEECCc
Confidence 4 567777764
No 126
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=128.73 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCc
Q 011382 286 KVNTHVYVTGLPDDVTVEEMV----EVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~----e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~ 361 (487)
..+++|||+|||+.+++++|+ ++|++||.|. .|.+. .+|++||||||+|.+.++|..||..|||.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~--------~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~ 95 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDIL--------DIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGY 95 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE--------EEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeE--------EEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCC
Confidence 456799999999999999876 7999999998 78764 36899999999999999999999999999
Q ss_pred ccCCCCceeEEEEeccc
Q 011382 362 PFRPDGKIPMSVTQAKF 378 (487)
Q Consensus 362 ~~~~G~~i~I~V~~A~~ 378 (487)
.|. |+ +|+|..|..
T Consensus 96 ~l~-gr--~l~V~~a~~ 109 (127)
T 2a3j_A 96 PFQ-GN--PLVITFSET 109 (127)
T ss_dssp CCT-TS--CCEEEECCC
T ss_pred EeC-CC--EEEEEEccC
Confidence 998 76 578888874
No 127
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=128.31 Aligned_cols=78 Identities=23% Similarity=0.237 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCcc----ccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcc
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGII----KEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP 362 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I----~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~ 362 (487)
..++|||+|||+++|+++|+++|++||.| . .|+|++| .+|+++|||||+|.+.++|..||+. |+..
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~--------~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~ 91 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKE--------GILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDL 91 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGG--------GEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcc--------eEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCe
Confidence 45689999999999999999999999976 5 7999999 5899999999999999999999985 9999
Q ss_pred cCCCCceeEEEEecc
Q 011382 363 FRPDGKIPMSVTQAK 377 (487)
Q Consensus 363 ~~~G~~i~I~V~~A~ 377 (487)
|. |+ .|.|..+.
T Consensus 92 l~-gR--~i~V~~a~ 103 (123)
T 2dha_A 92 LG-KR--YIELFRST 103 (123)
T ss_dssp SS-SC--EECCEEEC
T ss_pred eC-Ce--EEEEEECC
Confidence 97 65 46777664
No 128
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.7e-14 Score=118.19 Aligned_cols=77 Identities=19% Similarity=0.345 Sum_probs=67.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. ++++. ++++|||||+|.+.++|..||..|||..|.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~---------~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 82 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP---------LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLG- 82 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC---------SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSS-
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE---------EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 4567999999999999999999999999986 34444 468999999999999999999999999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|+ +|+|..|..
T Consensus 83 g~--~l~V~~a~~ 93 (97)
T 2e5j_A 83 TD--TLRVALARQ 93 (97)
T ss_dssp SS--CCEEEECCC
T ss_pred Cc--EEEEEEcCC
Confidence 75 578888764
No 129
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2.6e-14 Score=121.72 Aligned_cols=78 Identities=22% Similarity=0.403 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. .|+|++| |||||+|.+.++|..||+.|||..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~- 76 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVC--------YADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFR- 76 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEE--------EEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEE-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEe--------EEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCcc-
Confidence 3567999999999999999999999999999 9999875 89999999999999999999999998
Q ss_pred CCc---eeEEEEecccc
Q 011382 366 DGK---IPMSVTQAKFE 379 (487)
Q Consensus 366 G~~---i~I~V~~A~~~ 379 (487)
|+. .+|+|..|...
T Consensus 77 g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 77 SHEGETAYIRVKVDGPR 93 (108)
T ss_dssp CTTSCEEEEEEEESSCC
T ss_pred CCcCcceEEEEEeCCCC
Confidence 622 36889888753
No 130
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.9e-14 Score=124.36 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||+++|+++|+++|+.| .|. .|+|++|+ +|+++|||||+|.++++|..|| .||+..|. |
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~--------~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~-g 82 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVD--------AVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI-Q 82 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCC--------EEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEET-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-Cee--------EEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeEC-C
Confidence 45689999999999999999999999 787 89999996 5999999999999999999999 58999998 6
Q ss_pred CceeEEEEecc
Q 011382 367 GKIPMSVTQAK 377 (487)
Q Consensus 367 ~~i~I~V~~A~ 377 (487)
+ .|.|..+.
T Consensus 83 r--~i~V~~a~ 91 (109)
T 2dnn_A 83 R--YVEVSPAT 91 (109)
T ss_dssp E--EEEEEECC
T ss_pred e--EEEEEECC
Confidence 4 57888775
No 131
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=1.5e-14 Score=121.05 Aligned_cols=73 Identities=12% Similarity=0.216 Sum_probs=67.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.+.|||+||++.+|+++|+++|++||.|. .++|+. +||||||+|.+.++|..||+.|||..+. |+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~--------~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~-gr 71 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLV--------SFHPYL------NQGIALCKYTTREEANKAQMALNNCVLA-NT 71 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEE--------EEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEET-TE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEE--------EEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEEC-Cc
Confidence 45899999999999999999999999999 899865 6999999999999999999999999998 64
Q ss_pred ceeEEEEecc
Q 011382 368 KIPMSVTQAK 377 (487)
Q Consensus 368 ~i~I~V~~A~ 377 (487)
+|+|..|.
T Consensus 72 --~I~V~~A~ 79 (89)
T 2wbr_A 72 --TIFAESPS 79 (89)
T ss_dssp --EEEEECCC
T ss_pred --EEEEEECC
Confidence 68998884
No 132
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=125.50 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcC--Cccc
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD--GTPF 363 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ld--g~~~ 363 (487)
..+++|||+|||+++|+++|+++|++||.|. .|+|+++ ||||||+|.+.++|..||+.|+ +..|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~--------~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l 79 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVT--------NLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL 79 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEE--------EEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3567999999999999999999999999999 9999865 7999999999999999999776 4788
Q ss_pred CCCCceeEEEEeccccc
Q 011382 364 RPDGKIPMSVTQAKFEQ 380 (487)
Q Consensus 364 ~~G~~i~I~V~~A~~~~ 380 (487)
. |+ +|+|..|..+.
T Consensus 80 ~-Gr--~l~V~~A~~~~ 93 (105)
T 1sjq_A 80 R-GQ--PIYIQFSNHKE 93 (105)
T ss_dssp T-TE--ECCBCCCSSSS
T ss_pred C-CE--EEEEEEcCCCC
Confidence 7 74 67888887543
No 133
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=121.28 Aligned_cols=76 Identities=22% Similarity=0.223 Sum_probs=69.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCc
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~ 368 (487)
|+|||+|||+++|+++|+++|++||.|. .|+|.++ ++|||||+|.+.++|..||..|||..|. |+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~- 65 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLR--------TVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVIC-GS- 65 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCS--------EEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSS-SC-
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeEC-Cc-
Confidence 5899999999999999999999999999 9999876 7999999999999999999999999998 75
Q ss_pred eeEEEEeccccc
Q 011382 369 IPMSVTQAKFEQ 380 (487)
Q Consensus 369 i~I~V~~A~~~~ 380 (487)
+|+|..+....
T Consensus 66 -~l~V~~a~~~~ 76 (101)
T 2hvz_A 66 -RVRVELSTGMP 76 (101)
T ss_dssp -CCEEEESSSCC
T ss_pred -EEEEEEccCCC
Confidence 47888887543
No 134
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.9e-14 Score=120.43 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. |+.+ .+|+++|||||+|.+.++|..||..|||..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-----------~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 79 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK-----------VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIE- 79 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-----------CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-----------EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 3567999999999999999999999999875 4455 58999999999999999999999999999998
Q ss_pred CCceeEEEEeccccc
Q 011382 366 DGKIPMSVTQAKFEQ 380 (487)
Q Consensus 366 G~~i~I~V~~A~~~~ 380 (487)
|+ +|+|..+....
T Consensus 80 g~--~l~v~~a~~~~ 92 (101)
T 2fc9_A 80 GR--AIRLELQGPRG 92 (101)
T ss_dssp TE--EEEEEECSSCC
T ss_pred Ce--EEEEEEcCCCC
Confidence 64 68898887543
No 135
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.52 E-value=2.3e-14 Score=133.48 Aligned_cols=81 Identities=21% Similarity=0.380 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||+++|+++|+++|++||.|. .|+|..++ +|.++|||||+|.+.++|..||..|||..|.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~- 155 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLK--------KAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD- 155 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCS--------EEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC-
Confidence 4578999999999999999999999999999 99999997 9999999999999999999999999999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|+ +|+|..|..
T Consensus 156 Gr--~l~V~~a~~ 166 (177)
T 2f3j_A 156 GR--PMDIQLVAS 166 (177)
T ss_dssp SS--BCEEEEESS
T ss_pred CE--EEEEEEecC
Confidence 75 567877764
No 136
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.52 E-value=2.4e-14 Score=124.27 Aligned_cols=77 Identities=12% Similarity=0.181 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC-ccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCG-IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G-~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..++|||+|||+++|+++|+++|++|| .|. .++|+. ++++|||||+|.+.++|+.||+.|||..|.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~--------~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~- 93 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETT--------FSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFR- 93 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCS--------EEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEET-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeE--------EEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 457999999999999999999999999 898 787743 458999999999999999999999999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|+ +|+|..+..
T Consensus 94 Gr--~i~V~~a~~ 104 (111)
T 2jvr_A 94 GS--VITVERDDN 104 (111)
T ss_dssp TE--EEEEEESCC
T ss_pred Ce--EEEEEECCC
Confidence 75 678888763
No 137
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.3e-14 Score=125.09 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCC--ccc
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG--TPF 363 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg--~~~ 363 (487)
..+++|||+|||+++|+++|+++|++||.|. .|+|+++ ||||||+|.+.++|..||+.|++ ..|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~--------~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l 94 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVT--------NLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL 94 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCC--------EEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 4567999999999999999999999999999 9999875 79999999999999999999884 678
Q ss_pred CCCCceeEEEEecccc
Q 011382 364 RPDGKIPMSVTQAKFE 379 (487)
Q Consensus 364 ~~G~~i~I~V~~A~~~ 379 (487)
. |+ +|+|..|..+
T Consensus 95 ~-Gr--~l~V~~a~~k 107 (119)
T 2ad9_A 95 R-GQ--PIYIQFSNHK 107 (119)
T ss_dssp T-TB--CCEEEECSSS
T ss_pred C-Ce--EEEEEEccCC
Confidence 7 75 5788888754
No 138
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.52 E-value=1.3e-14 Score=120.17 Aligned_cols=80 Identities=28% Similarity=0.477 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCc
Q 011382 286 KVNTHVYVTGLPDDVTVEEMV----EVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~----e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~ 361 (487)
..+++|||+|||.++|+++|+ ++|++||.|. .|+|.+ +|.++|||||+|.+.++|..|+..|||.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~--------~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~ 74 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQIL--------DILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF 74 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEE--------EEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEE--------EEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCC
Confidence 456799999999999999999 9999999999 888863 6899999999999999999999999999
Q ss_pred ccCCCCceeEEEEecccc
Q 011382 362 PFRPDGKIPMSVTQAKFE 379 (487)
Q Consensus 362 ~~~~G~~i~I~V~~A~~~ 379 (487)
.|. |+ +|+|..+...
T Consensus 75 ~~~-g~--~l~v~~a~~~ 89 (97)
T 1nu4_A 75 PFY-DK--PMRIQYAKTD 89 (97)
T ss_dssp EET-TE--ECEEEECSSC
T ss_pred EEC-Cc--EEEEEEccCC
Confidence 998 64 6788888753
No 139
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.6e-14 Score=115.83 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|++||.|. .|+|. ||||||+|.+.++|..||..|||..|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~- 68 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVL--------ECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLH- 68 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEE--------EEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCS-
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccC-
Confidence 3567999999999999999999999999999 88886 789999999999999999999999998
Q ss_pred CCceeEEEEeccccc
Q 011382 366 DGKIPMSVTQAKFEQ 380 (487)
Q Consensus 366 G~~i~I~V~~A~~~~ 380 (487)
|+ +|+|..+....
T Consensus 69 g~--~l~v~~a~~~~ 81 (90)
T 2dnq_A 69 GV--NINVEASKNKS 81 (90)
T ss_dssp SC--BCEEECSSCCC
T ss_pred Cc--EEEEEECCCCC
Confidence 75 57888887543
No 140
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.51 E-value=4.2e-14 Score=126.58 Aligned_cols=81 Identities=35% Similarity=0.473 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||.++|+++|+++|++||.|. .|+|++++.+|+++|+|||+|.+.++|..|+..|||..|. |
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g 158 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIV--------QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE-G 158 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT-T
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEE--------EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec-C
Confidence 456899999999999999999999999999 9999999889999999999999999999999999999998 6
Q ss_pred CceeEEEEec
Q 011382 367 GKIPMSVTQA 376 (487)
Q Consensus 367 ~~i~I~V~~A 376 (487)
+..+|+|..|
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 4457888765
No 141
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.51 E-value=3.7e-14 Score=127.51 Aligned_cols=82 Identities=20% Similarity=0.309 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||.++|+++|+++|++||.|. .|+|++++ +|+++|||||+|.+.++|..|++.|||..+.+|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~--------~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 164 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIE--------ECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 164 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEE--------EEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 456899999999999999999999999999 99999995 799999999999999999999999999988755
Q ss_pred CceeEEEEecc
Q 011382 367 GKIPMSVTQAK 377 (487)
Q Consensus 367 ~~i~I~V~~A~ 377 (487)
+..+|+|..|.
T Consensus 165 ~~~~l~V~~ad 175 (175)
T 3nmr_A 165 CSSPMVVKFAD 175 (175)
T ss_dssp CSSCCEEEECC
T ss_pred CCCCeEEEecC
Confidence 33478888763
No 142
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=5e-14 Score=125.34 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||.++|+++|+++|++||.|. .+++++++.+|.++|+|||+|.+.++|..|+..|||..|.
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 155 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYL--------SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN- 155 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEE--------EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET-
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCee--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC-
Confidence 3567899999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEecc
Q 011382 366 DGKIPMSVTQAK 377 (487)
Q Consensus 366 G~~i~I~V~~A~ 377 (487)
|+ +|+|..|+
T Consensus 156 g~--~i~v~~a~ 165 (166)
T 3md3_A 156 GR--PLRINWAA 165 (166)
T ss_dssp TE--ECEEEESC
T ss_pred Cc--EEEEEecC
Confidence 64 67888774
No 143
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.7e-14 Score=119.73 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=67.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhc--CCccc
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLL--DGTPF 363 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~L--dg~~~ 363 (487)
..+++|||+|||+++|+++|+++|++||.|. .|.|+++ ||||||+|.+.++|..||+.| ++..|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~--------~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 78 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVT--------NILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL 78 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEE--------EEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3456999999999999999999999999999 8988754 899999999999999999977 46778
Q ss_pred CCCCceeEEEEecccc
Q 011382 364 RPDGKIPMSVTQAKFE 379 (487)
Q Consensus 364 ~~G~~i~I~V~~A~~~ 379 (487)
. |+ +|+|..|..+
T Consensus 79 ~-Gr--~l~V~~a~~~ 91 (101)
T 2cq1_A 79 R-NQ--PIYIQYSNHK 91 (101)
T ss_dssp T-TE--ECEEEECSCS
T ss_pred C-Cc--EEEEEEcCcc
Confidence 7 64 6789888753
No 144
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=8.8e-15 Score=130.34 Aligned_cols=82 Identities=23% Similarity=0.303 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeE------EEEecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRI------KIYVDKETGMKKGDALVTYLKEPSVALATQLLD 359 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~i------kl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ld 359 (487)
..+++|||+|||+++|+++|+++|++||.|. .+ .+.. ..+|+++|||||+|.+.++|..||..||
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~ln 113 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFS--------SETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEAN 113 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTT--------CHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcc--------cccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 4578999999999999999999999999998 43 1111 2479999999999999999999999999
Q ss_pred CcccCCCCceeEEEEecccc
Q 011382 360 GTPFRPDGKIPMSVTQAKFE 379 (487)
Q Consensus 360 g~~~~~G~~i~I~V~~A~~~ 379 (487)
|..|. |+ +|+|..|...
T Consensus 114 g~~~~-g~--~l~V~~a~~~ 130 (143)
T 3egn_A 114 GYVLF-GK--PMVVQFARSA 130 (143)
T ss_dssp TBEET-TE--ECEEEECCCS
T ss_pred CCEeC-Cc--EEEEEECCCC
Confidence 99998 74 6789888753
No 145
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=3.2e-14 Score=119.06 Aligned_cols=74 Identities=23% Similarity=0.392 Sum_probs=67.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+++|||+|||.++|+++|+++|++||.|. .|+|. +++|||||+|.+.++|..||..|||..|. |
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~--------~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g 90 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFIL--------DFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQ-G 90 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCS--------EEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEET-T
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEE--------EEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeEC-C
Confidence 457999999999999999999999999999 89887 46899999999999999999999999998 7
Q ss_pred CceeEEEEecc
Q 011382 367 GKIPMSVTQAK 377 (487)
Q Consensus 367 ~~i~I~V~~A~ 377 (487)
+ +|+|..|.
T Consensus 91 ~--~l~V~~a~ 99 (101)
T 2la4_A 91 R--NLRTGWGK 99 (101)
T ss_dssp E--ECCCCBCC
T ss_pred e--EEEEEecc
Confidence 4 57777765
No 146
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=6.3e-14 Score=116.60 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|++||.|. .|+|.++ +|||||+|.+.++|..||+.|||..|..
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~ 80 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIR--------TIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGG 80 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEE--------EEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 3557899999999999999999999999999 8888643 7999999999999999999999999972
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
.. .+|+|..|...
T Consensus 81 ~g-~~l~V~~a~~~ 93 (97)
T 1why_A 81 PD-RRLRVDFAKSG 93 (97)
T ss_dssp SS-CBCEEEECCCC
T ss_pred CC-cEEEEEECCCC
Confidence 02 36889888754
No 147
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.50 E-value=4.1e-14 Score=120.97 Aligned_cols=76 Identities=22% Similarity=0.262 Sum_probs=67.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcc--c
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP--F 363 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~--~ 363 (487)
.+++.|||+|||+++|+++|+++|++||.|. .|+|++ .||||||+|.+.++|..||+.|||.. |
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~--------~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i 84 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPIS--------YVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYI 84 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEE--------EEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCcee
Confidence 3566899999999999999999999999999 899874 37999999999999999999999986 6
Q ss_pred CCCCceeEEEEeccc
Q 011382 364 RPDGKIPMSVTQAKF 378 (487)
Q Consensus 364 ~~G~~i~I~V~~A~~ 378 (487)
. |+ +|+|+.++.
T Consensus 85 ~-Gr--~i~V~~S~~ 96 (100)
T 3r27_A 85 A-GH--PAFVNYSTS 96 (100)
T ss_dssp T-TE--EEEEEECSC
T ss_pred C-Cc--EEEEEeccc
Confidence 6 64 688888764
No 148
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=6e-14 Score=113.44 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=66.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhc-CCcccC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLL-DGTPFR 364 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~L-dg~~~~ 364 (487)
..+++|||+|||.++|+++|+++|++||.|. .|++.++ +|||||+|.+.++|..|+..| ||..|.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~--------~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~ 75 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIR--------TITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVN 75 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEE--------EEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEET
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEe--------EEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeEC
Confidence 3567899999999999999999999999999 8999863 799999999999999999988 999998
Q ss_pred CCCceeEEEEecc
Q 011382 365 PDGKIPMSVTQAK 377 (487)
Q Consensus 365 ~G~~i~I~V~~A~ 377 (487)
|+ +|+|..|+
T Consensus 76 -g~--~l~v~~ak 85 (85)
T 2ytc_A 76 -GR--RLNVKWGR 85 (85)
T ss_dssp -TE--ECCEEECC
T ss_pred -CC--EEEEEecC
Confidence 64 57777663
No 149
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=8e-14 Score=116.40 Aligned_cols=77 Identities=29% Similarity=0.399 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. .|+|.++ ||||||+|.+.++|..||+.|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~- 77 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAG--------EVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLR- 77 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCS--------EEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeE--------EEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 3567999999999999999999999999999 8998753 799999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..+...
T Consensus 78 g~--~l~v~~a~~~ 89 (99)
T 2cpj_A 78 GK--QLRVRFACHS 89 (99)
T ss_dssp TB--CCEEEESSCC
T ss_pred Cc--eEEEEEcCCC
Confidence 75 5788888753
No 150
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.50 E-value=7e-14 Score=117.22 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 286 KVNTHVYVTGLPD-DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 286 ~~nt~VyV~nLP~-diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
+.+++|||+|||+ ++|+++|+++|++||.|. .|+| ++|||||+|.+.++|..||..|||..|.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~--------~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM--------QINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEE--------EEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE--------EEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4678999999998 999999999999999999 8887 3899999999999999999999999998
Q ss_pred CCCceeEEEEeccc
Q 011382 365 PDGKIPMSVTQAKF 378 (487)
Q Consensus 365 ~G~~i~I~V~~A~~ 378 (487)
|+ +|+|..+..
T Consensus 84 -g~--~l~V~~a~~ 94 (97)
T 2xnq_A 84 -GK--KLILEVSSS 94 (97)
T ss_dssp -TE--ECEEEECCC
T ss_pred -CE--EEEEEecCC
Confidence 64 578887763
No 151
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.50 E-value=4.2e-14 Score=127.26 Aligned_cols=78 Identities=24% Similarity=0.439 Sum_probs=73.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.++|||+|||.++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..|+..|||..|. |+
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~ 164 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLK--------AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG-DK 164 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEE--------EEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET-TE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCce--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC-Ce
Confidence 56899999999999999999999999999 9999999889999999999999999999999999999998 64
Q ss_pred ceeEEEEec
Q 011382 368 KIPMSVTQA 376 (487)
Q Consensus 368 ~i~I~V~~A 376 (487)
+|+|..|
T Consensus 165 --~l~V~~A 171 (172)
T 2g4b_A 165 --KLLVQRA 171 (172)
T ss_dssp --ECEEEEC
T ss_pred --EEEEEeC
Confidence 6788876
No 152
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.7e-14 Score=122.72 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=67.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+++|||+|||+++|+++|+++|++||.|. .|.|.. ++|||||+|.+.++|..||..|||..|. |
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g 73 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLG--------RVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFH-H 73 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSS-S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEEC-C
Confidence 457899999999999999999999999999 888753 5899999999999999999999999998 7
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+ +|+|..|..
T Consensus 74 ~--~l~V~~a~~ 83 (111)
T 1whx_A 74 V--PLYLEWAPI 83 (111)
T ss_dssp S--BCEEEEEET
T ss_pred e--EEEEEECCC
Confidence 5 578887764
No 153
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.1e-14 Score=119.78 Aligned_cols=76 Identities=26% Similarity=0.366 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+++|||+|||.++|+++|+++|++||.|. .|+|+++ +|||||+|.+.++|..||..|||..|. |
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--------~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~-g 88 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIM--------EIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIE-G 88 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEE--------EEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEET-T
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEEC-C
Confidence 457999999999999999999999999999 9999875 899999999999999999999999998 6
Q ss_pred CceeEEEEecccc
Q 011382 367 GKIPMSVTQAKFE 379 (487)
Q Consensus 367 ~~i~I~V~~A~~~ 379 (487)
+ +|+|..+...
T Consensus 89 ~--~l~v~~a~~~ 99 (109)
T 1x4g_A 89 H--VVKCYWGKES 99 (109)
T ss_dssp E--ECEEECCCCC
T ss_pred c--EEEEEecCCC
Confidence 4 6788888754
No 154
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.50 E-value=2.9e-14 Score=127.74 Aligned_cols=79 Identities=29% Similarity=0.443 Sum_probs=73.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.++|||+|||.++|+++|+++|++||.|. .|+|++|+.+|.++|||||+|.+.++|..|++ |+|..|. |+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~-g~ 156 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTII--------DAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK-DR 156 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCS--------EEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS-SS
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEE--------EEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC-Ce
Confidence 46899999999999999999999999999 99999998899999999999999999999998 8999998 75
Q ss_pred ceeEEEEeccc
Q 011382 368 KIPMSVTQAKF 378 (487)
Q Consensus 368 ~i~I~V~~A~~ 378 (487)
+|+|..|..
T Consensus 157 --~i~V~~a~p 165 (167)
T 2cjk_A 157 --KIEIKRAEP 165 (167)
T ss_dssp --CEEEEECCC
T ss_pred --EEEEeecCC
Confidence 578888764
No 155
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=6.5e-14 Score=119.89 Aligned_cols=76 Identities=22% Similarity=0.233 Sum_probs=66.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcc--c
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP--F 363 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~--~ 363 (487)
..+++|||+|||+++|+++|+++|++||.|. .|.|+++ ||||||+|.+.++|..||+.|++.. |
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~--------~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i 78 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTIC--------YVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYI 78 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEE--------EEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3457999999999999999999999999999 8988753 7999999999999999999887654 7
Q ss_pred CCCCceeEEEEeccc
Q 011382 364 RPDGKIPMSVTQAKF 378 (487)
Q Consensus 364 ~~G~~i~I~V~~A~~ 378 (487)
. |+ +|+|..+..
T Consensus 79 ~-Gr--~l~V~~a~~ 90 (104)
T 1wex_A 79 A-GQ--QAFFNYSTS 90 (104)
T ss_dssp S-SS--BCEEEECSS
T ss_pred C-CE--EEEEEEccC
Confidence 7 75 578888874
No 156
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=8.2e-14 Score=116.01 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=65.7
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 286 KVNTHVYVTGLPD-DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 286 ~~nt~VyV~nLP~-diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
..+++|||+|||+ ++|+++|+++|++||.|. .|+|. +|||||+|.+.++|..||..|||..|.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~--------~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM--------QINIK--------NAFGFIQFDNPQSVRDAIECESQEMNF 71 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCC--------EEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCB
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE--------EEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 4567999999998 999999999999999999 88883 899999999999999999999999998
Q ss_pred CCCceeEEEEeccc
Q 011382 365 PDGKIPMSVTQAKF 378 (487)
Q Consensus 365 ~G~~i~I~V~~A~~ 378 (487)
|+. |+|..+..
T Consensus 72 -g~~--l~V~~a~~ 82 (96)
T 2kvi_A 72 -GKK--LILEVSSS 82 (96)
T ss_dssp -TTT--BCEEEEEC
T ss_pred -CcE--EEEEEcCc
Confidence 765 56666654
No 157
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=3.8e-14 Score=117.35 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=68.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||.++|+++|+++|++||.|. .+ . .+|+++|||||+|.+.++|..||..|||..|. |
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~--------~~----~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g 80 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIR--------LV----S-QDGKSKGIAYIEFKSEADAEKNLEEKQGAEID-G 80 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEEC--------CE----E-ETTEEEEEEEEEESSHHHHHHHHHHTTEEEET-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEE--------Ee----C-CCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-C
Confidence 467999999999999999999999999998 55 2 47999999999999999999999999999998 7
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+ +|+|..+..
T Consensus 81 ~--~l~v~~a~~ 90 (96)
T 1fjc_A 81 R--SVSLYYTGE 90 (96)
T ss_dssp E--EEEEEECSS
T ss_pred e--EEEEEEcCC
Confidence 4 678888764
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.49 E-value=8e-14 Score=129.94 Aligned_cols=82 Identities=23% Similarity=0.305 Sum_probs=76.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||.++|+++|+++|++||.|. .|+|++++.+|+++|||||+|.+.++|..|+..|||..|. |
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g 194 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIK--------SATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG-G 194 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCS-S
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCee--------EEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeC-C
Confidence 456999999999999999999999999999 9999999889999999999999999999999999999998 7
Q ss_pred CceeEEEEecccc
Q 011382 367 GKIPMSVTQAKFE 379 (487)
Q Consensus 367 ~~i~I~V~~A~~~ 379 (487)
+ .|+|..|...
T Consensus 195 ~--~i~V~~a~~~ 205 (216)
T 2qfj_A 195 Q--YLRVGKAVTP 205 (216)
T ss_dssp S--BCEEEECSSC
T ss_pred c--EEEEEEecCC
Confidence 5 5788888754
No 159
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.49 E-value=6.6e-14 Score=147.76 Aligned_cols=82 Identities=23% Similarity=0.311 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|.++|++||.|. .|+|+.|+.+|+++|||||+|.+.++|..||..|||..|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~- 170 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIK--------RIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID- 170 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCee--------EEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC-
Confidence 3567999999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|+ .|.|..|..
T Consensus 171 gr--~i~V~~a~~ 181 (437)
T 3pgw_S 171 GR--RVLVDVERG 181 (437)
T ss_pred CE--EEEEEEeCC
Confidence 75 577777764
No 160
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=4.2e-14 Score=121.02 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=66.2
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCc--cc
Q 011382 287 VNTHVYVTGLPD-DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT--PF 363 (487)
Q Consensus 287 ~nt~VyV~nLP~-diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~--~~ 363 (487)
.+++|||+|||+ ++|+++|+++|++||.|. .|+|+++ ||||||+|.+.++|..||+.||+. .|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~--------~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 79 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVIS--------NHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALV 79 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEE--------EEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEE--------EEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceE
Confidence 456999999999 999999999999999999 9998765 589999999999999999999865 48
Q ss_pred CCCCceeEEEEeccc
Q 011382 364 RPDGKIPMSVTQAKF 378 (487)
Q Consensus 364 ~~G~~i~I~V~~A~~ 378 (487)
. |+ +|+|..|..
T Consensus 80 ~-Gr--~l~V~~a~~ 91 (102)
T 1x4d_A 80 F-GK--PVRVHLSQK 91 (102)
T ss_dssp T-TE--ECEEEEECC
T ss_pred C-Cc--EEEEEECCC
Confidence 7 74 678888873
No 161
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.5e-13 Score=113.30 Aligned_cols=75 Identities=24% Similarity=0.263 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. .|+|. +|||||+|.+.++|..||..|||..|.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~- 70 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVI--------ECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQ- 70 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCC--------EEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeC-
Confidence 4567999999999999999999999999999 88885 459999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..+...
T Consensus 71 g~--~l~V~~a~~~ 82 (92)
T 2dgt_A 71 GK--RMHVQLSTSR 82 (92)
T ss_dssp TE--EEEEEESSCC
T ss_pred Cc--EEEEEEccCC
Confidence 64 6889988754
No 162
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.47 E-value=9.5e-14 Score=124.59 Aligned_cols=77 Identities=21% Similarity=0.268 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. .|+|+++ ++|||||+|.+.++|..||..|||..|.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--------~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~- 136 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLR--------SVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLC- 136 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEE--------EEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEE--------EEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 4678999999999999999999999999999 9999876 5899999999999999999999999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|+ +|+|..+..
T Consensus 137 g~--~l~v~~a~~ 147 (150)
T 2i2y_A 137 GC--RVRVELSNG 147 (150)
T ss_dssp SS--CCEEEECCC
T ss_pred Ce--EEEEEEcCC
Confidence 75 578887764
No 163
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.47 E-value=1.3e-13 Score=118.09 Aligned_cols=75 Identities=32% Similarity=0.505 Sum_probs=68.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|++||.|. .|+|. +|||||+|.+.++|..|+..|||..|.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~- 91 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMK--------EVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFA- 91 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCC--------EEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE--------EEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 3567999999999999999999999999999 89886 799999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..+...
T Consensus 92 g~--~l~V~~a~~~ 103 (108)
T 2jvo_A 92 NQ--PLEVVYSKLP 103 (108)
T ss_dssp TE--ECEEESCSCC
T ss_pred Ce--EEEEEEecCC
Confidence 64 6788888743
No 164
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.46 E-value=3.1e-14 Score=128.24 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||+++|+++|+++|++|| |. .|+|++|+ +|++||||||+|.+.++|..|| .||+..|. |
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~--------~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~-g 112 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PV--------RVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQ-H 112 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CS--------EEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSS-S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-Ce--------EEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEEC-C
Confidence 345899999999999999999999999 77 79999997 4999999999999999999999 68999998 7
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+. |+|..+..
T Consensus 113 R~--i~V~~a~~ 122 (139)
T 2hgn_A 113 RY--IELFLNST 122 (139)
T ss_dssp CC--CCCEECCC
T ss_pred EE--EEEEECCC
Confidence 64 67776654
No 165
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.46 E-value=1.4e-13 Score=126.70 Aligned_cols=83 Identities=23% Similarity=0.408 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||.++|+++|+++|++||.|. .|+|.+++.+|.++|||||+|.+.++|..|+..|||..|.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 182 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLK--------AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG- 182 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEE--------EEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc--------EEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 3568999999999999999999999999999 9999999889999999999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..|...
T Consensus 183 g~--~l~v~~a~~~ 194 (198)
T 2yh0_A 183 DK--KLLVQRASVG 194 (198)
T ss_dssp TE--ECEEEESCCC
T ss_pred CE--EEEEEECCCC
Confidence 64 6788888753
No 166
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.46 E-value=7.8e-14 Score=123.78 Aligned_cols=80 Identities=26% Similarity=0.335 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++|+.+. + .|+|++|+. |++||||||+|.+.++|..||+ +++..|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~-~------~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~- 109 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLEIVP-N------GITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIG- 109 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSCEEE-E------EEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCcee-e------EEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEEC-
Confidence 3456899999999999999999999996552 2 589999975 9999999999999999999998 5788897
Q ss_pred CCceeEEEEecc
Q 011382 366 DGKIPMSVTQAK 377 (487)
Q Consensus 366 G~~i~I~V~~A~ 377 (487)
|+ .|.|..+.
T Consensus 110 gR--~I~V~~a~ 119 (126)
T 2hgm_A 110 HR--YIEVFKSS 119 (126)
T ss_dssp TB--CCCCEEEC
T ss_pred CE--EEEEEECC
Confidence 76 46776664
No 167
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=113.19 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
...++|||+|||+++|+++|+++|++||.|. .|+|. +|||||+|.+.++|..||..|||..|.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~- 69 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVI--------ECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVK- 69 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEE--------EEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEE--------EEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 3457899999999999999999999999999 88886 459999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..+...
T Consensus 70 g~--~l~v~~a~~~ 81 (90)
T 2dnp_A 70 GK--RINVELSTKG 81 (90)
T ss_dssp TE--ECEEEESCCC
T ss_pred Cc--EEEEEECCCC
Confidence 64 6788888754
No 168
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=113.87 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=65.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCc-cccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccc
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGI-IKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG-TPF 363 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~-I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg-~~~ 363 (487)
...++|||+|||+++|+++|+++|++||. |. .+.+ .++|||||+|.+.++|..||+.||| ..|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~--------~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 70 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLA--------GQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVEL 70 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCS--------SCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceE--------EEEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeE
Confidence 35678999999999999999999999999 55 4554 2489999999999999999999999 999
Q ss_pred CCCCceeEEEEecccc
Q 011382 364 RPDGKIPMSVTQAKFE 379 (487)
Q Consensus 364 ~~G~~i~I~V~~A~~~ 379 (487)
. |+ +|+|..+...
T Consensus 71 ~-g~--~l~v~~a~~~ 83 (93)
T 2cqh_A 71 H-GK--IMEVDYSVSK 83 (93)
T ss_dssp T-TE--ECEEEECCCC
T ss_pred C-CE--EEEEEEccCc
Confidence 8 64 6788888754
No 169
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.45 E-value=1.5e-13 Score=115.77 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=67.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||+++|+++|+++|++||.|. .|+|. +|||||+|.+.++|..||..|||..|.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--------~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~- 71 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLE--------RVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLE- 71 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEE--------EEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccC-
Confidence 3567899999999999999999999999999 88875 569999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..+...
T Consensus 72 g~--~l~v~~a~~~ 83 (103)
T 2dgu_A 72 GE--NIEIVFAKPP 83 (103)
T ss_dssp TE--EEEEEECCCC
T ss_pred CC--EEEEEEcCCC
Confidence 64 6888888754
No 170
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=9.7e-14 Score=120.88 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=65.2
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCC--ccc
Q 011382 287 VNTHVYVTGLPDD-VTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG--TPF 363 (487)
Q Consensus 287 ~nt~VyV~nLP~d-iTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg--~~~ 363 (487)
.+++|||+|||++ +|+++|+++|++||.|. .|+|++ +||||||+|.+.++|..||+.||+ ..|
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~--------~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIK--------NYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCS--------EEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEE--------EEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 4569999999998 99999999999999999 999863 489999999999999999998864 558
Q ss_pred CCCCceeEEEEeccc
Q 011382 364 RPDGKIPMSVTQAKF 378 (487)
Q Consensus 364 ~~G~~i~I~V~~A~~ 378 (487)
. |+ +|+|..|..
T Consensus 90 ~-Gr--~l~V~~a~~ 101 (112)
T 1x4f_A 90 Q-GR--CVKVDLSEK 101 (112)
T ss_dssp S-SS--CCEEEEECS
T ss_pred C-CE--EEEEEECcc
Confidence 7 76 578887763
No 171
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.45 E-value=2.7e-13 Score=115.41 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=66.6
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 287 VNTHVYVTGLPDD-VTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 287 ~nt~VyV~nLP~d-iTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
.+++|||+|||++ +|+++|+++|++||.|. .|+| ++|||||+|.+.++|..||..|||..|.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~--------~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~- 88 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVA--------GCSV--------HKGYAFVQYSNERHARAAVLGENGRVLA- 88 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCS--------EEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEET-
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeE--------EEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 4579999999999 99999999999999999 8888 5899999999999999999999999998
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|+ +|+|..+..
T Consensus 89 g~--~l~V~~a~~ 99 (110)
T 1wf1_A 89 GQ--TLDINMAGE 99 (110)
T ss_dssp TE--ECCEEESCC
T ss_pred Ce--EEEEEECCC
Confidence 64 578888763
No 172
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=9.1e-14 Score=115.05 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeE-EEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRI-KIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~i-kl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
.+++|||+|||+++|+++|+++|++||.|. .| .|++++.+|. |||+|.+.++|..||..|||..|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~- 80 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVE--------SCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLE- 80 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEE--------EEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCS-
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeE--------EEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEEC-
Confidence 457899999999999999999999999999 89 4888765444 999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..|...
T Consensus 81 g~--~l~V~~a~~~ 92 (96)
T 2e44_A 81 NF--TLKVAYIPDE 92 (96)
T ss_dssp SC--BCEEEECCCC
T ss_pred Cc--EEEEEEcCcc
Confidence 76 5788887643
No 173
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.45 E-value=2.2e-13 Score=111.60 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=66.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||+++|+++|+++|++| .|. .|+|. +++|||||+|.+.++|..||+.|||..|. |
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~--------~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~-g 67 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLK--------YCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFR-G 67 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCC--------CEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEET-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeE--------EEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeEC-C
Confidence 45789999999999999999999999 888 78873 67999999999999999999999999998 7
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+ +|+|..|..
T Consensus 68 ~--~l~V~~a~~ 77 (88)
T 1wg1_A 68 K--DLIVQLQPT 77 (88)
T ss_dssp E--EEEEEECCC
T ss_pred c--EEEEEEcCC
Confidence 4 578887753
No 174
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.44 E-value=2.6e-13 Score=121.22 Aligned_cols=78 Identities=23% Similarity=0.310 Sum_probs=69.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccce-EEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGD-ALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~-AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
-.+|||+|||+.+|+++|+++|++||.|. +|+|+.+ .+|| |||+|.+.++|..|++.|||..|. |
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~--------~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~-g 93 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVL--------KIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIY-N 93 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEE--------EEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEE-T
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEE--------EEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeec-C
Confidence 35799999999999999999999999999 9998864 2688 999999999999999999999998 5
Q ss_pred CceeEEEEecccc
Q 011382 367 GKIPMSVTQAKFE 379 (487)
Q Consensus 367 ~~i~I~V~~A~~~ 379 (487)
+..+|+|+.++..
T Consensus 94 ~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 94 ACCTLRIDFSKLT 106 (130)
T ss_dssp TEEEEEEEECSCS
T ss_pred CCcEEEEEecCCC
Confidence 4457899988754
No 175
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.44 E-value=1.3e-13 Score=114.02 Aligned_cols=74 Identities=22% Similarity=0.282 Sum_probs=61.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||+++|+++|+++|++||.|. .|+|+++ +||||||+|.++++|.. |+|..+. +
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~--------~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~-~ 71 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVV--------DVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLI-I 71 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEE-E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEE--------EEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcc-c
Confidence 456999999999999999999999999999 8998764 79999999999999883 5666654 3
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+.++|.|..|..
T Consensus 72 ~g~~v~v~~a~~ 83 (89)
T 3d2w_A 72 KGISVHISNAEP 83 (89)
T ss_dssp TTEEEEEEECC-
T ss_pred CCEEEEEEEcCC
Confidence 336788888874
No 176
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.44 E-value=9.8e-14 Score=119.85 Aligned_cols=75 Identities=23% Similarity=0.417 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||+++|+++|+++|++||.|. .|+|+.| |||||+|.+.++|..||+.|||..|. |
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~-g 78 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVC--------YADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFR-S 78 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEE--------EEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCC-C
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEEC-C
Confidence 457899999999999999999999999999 8998765 99999999999999999999999998 7
Q ss_pred Ccee---EEEEecc
Q 011382 367 GKIP---MSVTQAK 377 (487)
Q Consensus 367 ~~i~---I~V~~A~ 377 (487)
+.++ |+|..+.
T Consensus 79 r~~~~~~i~v~~~~ 92 (115)
T 3beg_B 79 HEGETAYIRVKVDG 92 (115)
T ss_dssp TTSCCCBCEEEECC
T ss_pred cEeeeEEEEeccCC
Confidence 6522 4565554
No 177
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=4.7e-13 Score=111.66 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcC--CccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCccc
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKC--GIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPF 363 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~--G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~ 363 (487)
...++|||+|||+++|+++|+++|++| |.|. .|++. +|||||+|.+.++|..||..|||..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~--------~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVE--------RVKKI--------RDYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEE--------EEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceE--------EEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 356799999999999999999999999 8888 77652 78999999999999999999999999
Q ss_pred CCCCceeEEEEeccccc
Q 011382 364 RPDGKIPMSVTQAKFEQ 380 (487)
Q Consensus 364 ~~G~~i~I~V~~A~~~~ 380 (487)
. |+ +|+|..|....
T Consensus 77 ~-g~--~l~v~~a~~~~ 90 (99)
T 2cpd_A 77 D-GS--PIEVTLAKPVD 90 (99)
T ss_dssp T-TE--EEEEECCCCCC
T ss_pred C-Cc--EEEEEECCCCC
Confidence 8 64 68999887543
No 178
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.8e-13 Score=117.74 Aligned_cols=64 Identities=25% Similarity=0.360 Sum_probs=57.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCC---CCccceEEEEeCCHHHHHHHHHhc
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKET---GMKKGDALVTYLKEPSVALATQLL 358 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~t---G~~KG~AfV~F~~~esa~~Ai~~L 358 (487)
...++|||+|||+++|+++|+++|++||.|. +.++.++.+ |++||||||+|.+.++|..||+.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~---------~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV---------VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC---------EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE---------EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 3467899999999999999999999999997 556666666 899999999999999999999988
No 179
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.2e-13 Score=112.79 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=65.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||+++|+++|+++|++||.|. .| +.++.+|+ ||||+|.+.++|..||. |||..|. |
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~--------~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~-g 71 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVA--------SV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLG-G 71 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEE--------EE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEET-T
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeE--------EE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEEC-C
Confidence 446999999999999999999999999999 77 66666776 99999999999999999 9999998 7
Q ss_pred CceeEEEEecc
Q 011382 367 GKIPMSVTQAK 377 (487)
Q Consensus 367 ~~i~I~V~~A~ 377 (487)
+ +|+|..+.
T Consensus 72 ~--~l~V~~a~ 80 (94)
T 2e5g_A 72 H--RLRVRPRE 80 (94)
T ss_dssp E--ECCCBCSC
T ss_pred E--EEEEEECC
Confidence 5 56777665
No 180
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.44 E-value=2.4e-13 Score=128.68 Aligned_cols=78 Identities=19% Similarity=0.311 Sum_probs=71.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.++|||+|||+++|+++|+++|++||.|. .|+|++|+ +.+||||||+|.+.++|..||+.|||..|. |+
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~--------~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~-g~ 171 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNIL--------SCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLN-DR 171 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEET-TE
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeE--------EEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEEC-CE
Confidence 45899999999999999999999999999 99999984 568999999999999999999999999998 74
Q ss_pred ceeEEEEeccc
Q 011382 368 KIPMSVTQAKF 378 (487)
Q Consensus 368 ~i~I~V~~A~~ 378 (487)
+|+|..|..
T Consensus 172 --~i~V~~a~~ 180 (213)
T 4f02_A 172 --KVFVGRFKS 180 (213)
T ss_dssp --ECEEEECCC
T ss_pred --EEEEEEcCC
Confidence 688988864
No 181
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.43 E-value=3.6e-13 Score=124.80 Aligned_cols=80 Identities=23% Similarity=0.293 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.-.+|||+|||+.+|+++|+++|++||.|. +|+|+.+ +++|||||+|.+.++|..|++.|||..|. |
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~--------~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~-g 111 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVL--------KIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIY-N 111 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEE--------EEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSS-S
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEE--------EEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEec-C
Confidence 345799999999999999999999999999 9998754 36899999999999999999999999997 3
Q ss_pred CceeEEEEecccc
Q 011382 367 GKIPMSVTQAKFE 379 (487)
Q Consensus 367 ~~i~I~V~~A~~~ 379 (487)
...+|+|+.|+..
T Consensus 112 ~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 112 ACCTLRIDFSKLT 124 (164)
T ss_dssp SCSCEEEEECSSS
T ss_pred CCcEEEEEEecCC
Confidence 2136899988754
No 182
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=6.9e-13 Score=117.43 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=67.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccce-EEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGD-ALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~-AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
-..|||+|||+.+|+++|+++|++||.|. +|+|+. + .|| |||+|.+.++|..|++.|||..|. |
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~--------~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~-g 89 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQ--------RIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIY-A 89 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEE--------EEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCB-T
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEE--------EEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEec-C
Confidence 34689999999999999999999999999 999875 2 286 999999999999999999999998 5
Q ss_pred CceeEEEEecccc
Q 011382 367 GKIPMSVTQAKFE 379 (487)
Q Consensus 367 ~~i~I~V~~A~~~ 379 (487)
+..+|+|..|+..
T Consensus 90 ~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 90 GCCTLKIEYARPT 102 (124)
T ss_dssp TBSEEEEECCSCS
T ss_pred CCeEEEEEEecCC
Confidence 4347899988753
No 183
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=7.8e-13 Score=110.08 Aligned_cols=75 Identities=28% Similarity=0.313 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|| ++|+++|+++|++||.|. .|+|. +++|||||+|.+.++|..||..|||..|.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~--------~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~- 75 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNII--------DLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE- 75 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEE--------EEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEET-
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEE--------EEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeEC-
Confidence 35679999996 999999999999999999 88883 57899999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..|...
T Consensus 76 g~--~l~v~~a~~~ 87 (97)
T 1x5p_A 76 SV--QLKVNIARKQ 87 (97)
T ss_dssp TE--EEEEECCSSC
T ss_pred Ce--EEEEEECCCC
Confidence 64 6889888754
No 184
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.41 E-value=3.2e-13 Score=109.40 Aligned_cols=72 Identities=22% Similarity=0.385 Sum_probs=62.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcC----C-------ccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHH
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKC----G-------IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALA 354 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~----G-------~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~A 354 (487)
+..++|||+|||+++|+++|+++|++| | .|. .+++.++ +|||||+|.+.++|..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~--------~~~~~~~------kg~afV~f~~~~~a~~A 69 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL--------AVQINQD------KNFAFLEFRSVDETTQA 69 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEE--------EEEECSS------SSEEEEEESSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcce--------EEEecCC------CcEEEEEcCCHHHHHHH
Confidence 356799999999999999999999999 8 666 6776543 89999999999999999
Q ss_pred HHhcCCcccCCCCceeEEEEe
Q 011382 355 TQLLDGTPFRPDGKIPMSVTQ 375 (487)
Q Consensus 355 i~~Ldg~~~~~G~~i~I~V~~ 375 (487)
+ .|||..|. |+ +|+|++
T Consensus 70 ~-~l~g~~~~-g~--~l~V~r 86 (87)
T 2hzc_A 70 M-AFDGIIFQ-GQ--SLKIRR 86 (87)
T ss_dssp G-GGTTCEET-TE--ECEEEC
T ss_pred H-hcCCCEEC-Ce--EEEEeC
Confidence 9 89999998 75 567764
No 185
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.39 E-value=4.9e-13 Score=126.07 Aligned_cols=77 Identities=18% Similarity=0.303 Sum_probs=68.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.++|||+|||+++|+++|+++|++||.|. .|+|.+++ +|+++|||||+|.+.++|..||..++ ..|. |+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~-Gr 177 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVL--------NIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYK-ET 177 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEE--------EEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEET-TE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEE--------EEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeEC-CE
Confidence 46899999999999999999999999999 99999995 69999999999999999999998654 5887 75
Q ss_pred ceeEEEEecc
Q 011382 368 KIPMSVTQAK 377 (487)
Q Consensus 368 ~i~I~V~~A~ 377 (487)
+|.|..+.
T Consensus 178 --~l~V~~~~ 185 (193)
T 2voo_A 178 --DLLILFKD 185 (193)
T ss_dssp --ECEEEETT
T ss_pred --EEEEEEhH
Confidence 56777554
No 186
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=4.1e-13 Score=109.69 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=62.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
.+++|||+|||+++|+++|+++|++||.|. .|+|+++ +||||||+|.+.++|+.| ++..+. +
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~~~~-~ 65 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVM--------DVFIPKP-----FRAFAFVTFADDQIAQSL----CGEDLI-I 65 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCC--------EEECCSS-----CCSCCEEECSCHHHHHHT----TTCEEE-E
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCee--------EEEEecC-----CCCEEEEEECCHHHHHHH----hcCCce-e
Confidence 567999999999999999999999999999 8988754 799999999999999754 444442 2
Q ss_pred CceeEEEEeccccc
Q 011382 367 GKIPMSVTQAKFEQ 380 (487)
Q Consensus 367 ~~i~I~V~~A~~~~ 380 (487)
..++|+|..+....
T Consensus 66 ~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 66 KGISVHISNAEPKH 79 (88)
T ss_dssp TTEEEEEECCCCCC
T ss_pred CCEEEEEEecCCCC
Confidence 22578888887543
No 187
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.4e-12 Score=110.38 Aligned_cols=71 Identities=20% Similarity=0.347 Sum_probs=61.8
Q ss_pred CcEEEEcCCCCCCCHHH----HHHHhhcCC-ccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcc
Q 011382 288 NTHVYVTGLPDDVTVEE----MVEVFSKCG-IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP 362 (487)
Q Consensus 288 nt~VyV~nLP~diTeee----L~e~Fsk~G-~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~ 362 (487)
.|.|||+|||+++++++ |+++|++|| .|. .| +| |+|||.|.+.++|..|++.|||..
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl--------~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~ 70 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVL--------SI-------TG---CSAILRFINQDSAERAQKRMENED 70 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEE--------EC-------CT---TCEEEEESSHHHHHHHHHHHTTCC
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeE--------EE-------ec---CEEEEEECCHHHHHHHHHHhcCCc
Confidence 44599999999999988 668999995 998 55 45 999999999999999999999999
Q ss_pred cCCCCceeEEEEecccc
Q 011382 363 FRPDGKIPMSVTQAKFE 379 (487)
Q Consensus 363 ~~~G~~i~I~V~~A~~~ 379 (487)
|. |+ +|+|+.|+..
T Consensus 71 l~-gr--~i~v~~A~~~ 84 (96)
T 2diu_A 71 VF-GN--RIIVSFTPKN 84 (96)
T ss_dssp SS-SS--CCEEESSCCS
T ss_pred cC-Cc--eEEEEecCCC
Confidence 98 75 5788888743
No 188
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=8.3e-13 Score=115.42 Aligned_cols=77 Identities=19% Similarity=0.335 Sum_probs=64.9
Q ss_pred CCcEEEE--cCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCccc-
Q 011382 287 VNTHVYV--TGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPF- 363 (487)
Q Consensus 287 ~nt~VyV--~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~- 363 (487)
..++||| +|||+++|+++|+++|++||.|. .|.|.. .||||||+|.+.++|..|++.|||..|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~--------~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~ 89 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD--------ALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 89 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEE--------EEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeE--------EEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 3568999 77999999999999999999999 887743 279999999999999999999999987
Q ss_pred CC-CCceeEEEEecc
Q 011382 364 RP-DGKIPMSVTQAK 377 (487)
Q Consensus 364 ~~-G~~i~I~V~~A~ 377 (487)
.. |...+|.|..+.
T Consensus 90 ~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 90 DDLGQKITLYLNFVE 104 (114)
T ss_dssp CTTSCEEECEEEEES
T ss_pred cccCCCcEEEEEecc
Confidence 10 223578888776
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.34 E-value=1.2e-12 Score=124.27 Aligned_cols=80 Identities=15% Similarity=0.299 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCcc--ccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGII--KEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I--~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
.+++|||+|||+++|+++|+++|++||.| . .|+|+.++ |.++|+|||+|.+.++|..||..|||+.|.
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~--------~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~ 191 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPT--------SVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMK 191 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCS--------EEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceE--------EEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCcc
Confidence 45689999999999999999999999999 7 89998874 677899999999999999999999999997
Q ss_pred C-CCceeEEEEec
Q 011382 365 P-DGKIPMSVTQA 376 (487)
Q Consensus 365 ~-G~~i~I~V~~A 376 (487)
+ +.+.++.|+.|
T Consensus 192 g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 192 NPNGPYPYTLKLC 204 (205)
T ss_dssp CSSSSSCEECEEE
T ss_pred CCCCCcceEEEec
Confidence 2 22345666543
No 190
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.34 E-value=4e-12 Score=111.23 Aligned_cols=75 Identities=28% Similarity=0.313 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|| ++|+++|+++|++||.|. .|+|. +++|||||+|.+.++|..||..|||..|.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~--------~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~- 99 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNII--------DLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE- 99 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCS--------CEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCS-
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEE--------EEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 35679999996 799999999999999999 88884 57899999999999999999999999998
Q ss_pred CCceeEEEEecccc
Q 011382 366 DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 G~~i~I~V~~A~~~ 379 (487)
|+ +|+|..|...
T Consensus 100 g~--~l~V~~a~~~ 111 (121)
T 2bz2_A 100 SV--QLKVNIARKQ 111 (121)
T ss_dssp SC--BCEEEECCSS
T ss_pred Ce--EEEEEEeCCC
Confidence 75 5788888754
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.34 E-value=2e-12 Score=116.99 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=68.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G 366 (487)
..++|||+|||.++|+++|+++|++||.|. .+ ..+|.++|||||+|.+.++|..|+..|||..|. |
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~--------~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g 163 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIR--------LV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID-G 163 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEE--------EE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET-T
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEE--------Ee-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC-C
Confidence 467999999999999999999999999988 54 368999999999999999999999999999998 7
Q ss_pred CceeEEEEeccc
Q 011382 367 GKIPMSVTQAKF 378 (487)
Q Consensus 367 ~~i~I~V~~A~~ 378 (487)
+ +|+|..|..
T Consensus 164 ~--~i~v~~a~~ 173 (175)
T 1fje_B 164 R--SVSLYYTGE 173 (175)
T ss_dssp E--EEEEEECSS
T ss_pred e--EEEEEecCC
Confidence 4 688888763
No 192
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.33 E-value=4.6e-12 Score=108.54 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCC-----CCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCC-CCccceEEEEeCCHHHHHHHHHhcCC
Q 011382 287 VNTHVYVTGLPD-----DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKET-GMKKGDALVTYLKEPSVALATQLLDG 360 (487)
Q Consensus 287 ~nt~VyV~nLP~-----diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~t-G~~KG~AfV~F~~~esa~~Ai~~Ldg 360 (487)
.++.|+|+||.. +-++++|+++|++||.|. +|+|++++.+ |+++|||||+|.++++|..|++.|||
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~--------~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG 78 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVG--------KCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG 78 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEE--------EEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEE--------EEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC
Confidence 346899999962 347899999999999999 9999998654 78999999999999999999999999
Q ss_pred cccCCCCceeEEEEecc
Q 011382 361 TPFRPDGKIPMSVTQAK 377 (487)
Q Consensus 361 ~~~~~G~~i~I~V~~A~ 377 (487)
..|. |+ +|+|..+.
T Consensus 79 ~~~~-Gr--~i~v~~a~ 92 (105)
T 2pe8_A 79 RYFG-GR--VVKACFYN 92 (105)
T ss_dssp CEET-TE--ECEEEECC
T ss_pred CEEC-Cc--EEEEEEcC
Confidence 9998 75 57888876
No 193
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.30 E-value=2.5e-12 Score=112.14 Aligned_cols=60 Identities=27% Similarity=0.257 Sum_probs=55.1
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
.+++||+|+|||+++++ .|++++.+|++||+++|++||.|.+|.|++.++.|++||.|..
T Consensus 5 ~ps~vv~L~Nm~~~~e~-~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~ 64 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTE-EEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS 64 (114)
T ss_dssp CCCSEEEEESSCCTTTC-CSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSS
T ss_pred CCCcEEEEECCCChHHc-cChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECC
Confidence 35789999999999996 6888899999999999999999999999888889999999865
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.28 E-value=7.8e-12 Score=121.92 Aligned_cols=83 Identities=20% Similarity=0.293 Sum_probs=71.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcC-CcccCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD-GTPFRPD 366 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ld-g~~~~~G 366 (487)
.++|||+|||..+|+++|+++|++||.|. .|+|++| .+|+++|||||+|.+.++|..||..|| |..+..+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~--------~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 166 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVE--------KAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTT 166 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSS
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeE--------EEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecC
Confidence 56899999999999999999999999999 9999999 699999999999999999999999995 4444322
Q ss_pred CceeEEEEecccc
Q 011382 367 GKIPMSVTQAKFE 379 (487)
Q Consensus 367 ~~i~I~V~~A~~~ 379 (487)
...+|.|..+...
T Consensus 167 ~~r~i~v~~~~~~ 179 (261)
T 3sde_A 167 TPRPVIVEPMEQF 179 (261)
T ss_dssp SCCBCEEEECCCE
T ss_pred CCceEEEeecccc
Confidence 2246888887753
No 195
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.27 E-value=1.4e-11 Score=120.37 Aligned_cols=77 Identities=19% Similarity=0.315 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 286 ~~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
..+++|||+|||.++|+++|+++|++||.|. .|+|+.++ +|||||+|.+.++|..||..|||..|..
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~--------~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~ 271 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFK--------EVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQ 271 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeE--------EEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCC
Confidence 4567899999999999999999999999999 99998663 6999999999999999999999999974
Q ss_pred CCceeEEEEecc
Q 011382 366 DGKIPMSVTQAK 377 (487)
Q Consensus 366 G~~i~I~V~~A~ 377 (487)
|+ .|+|..|+
T Consensus 272 g~--~l~v~~ak 281 (282)
T 3pgw_A 272 NN--AMKISFAK 281 (282)
T ss_pred CC--EEEEEEec
Confidence 43 68888774
No 196
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.24 E-value=1e-11 Score=121.62 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCCCC---------CHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHH
Q 011382 286 KVNTHVYVTGLPDDV---------TVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQ 356 (487)
Q Consensus 286 ~~nt~VyV~nLP~di---------TeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~ 356 (487)
+.+++|||+|||..+ |+++|+++|++||.|. .|+|+. +||||||+|.+.++|+.|++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~--------~v~v~~------~kG~AFV~F~~~~~Ae~A~~ 197 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDID--------RIRYVE------SKNCGFVKFKYQANAEFAKE 197 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEE--------EEEEEG------GGTEEEEEESSHHHHHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEE--------EEEEEC------CCCEEEEEeCCHHHHHHHHH
Confidence 468899999999998 7999999999999999 999985 48999999999999999999
Q ss_pred hcCCccc------------CCCCceeEEEEeccc
Q 011382 357 LLDGTPF------------RPDGKIPMSVTQAKF 378 (487)
Q Consensus 357 ~Ldg~~~------------~~G~~i~I~V~~A~~ 378 (487)
.|+|..| . |+ .|.|..|..
T Consensus 198 am~g~~l~~~~~~e~~~~~~-gr--~L~V~wA~~ 228 (240)
T 3u1l_A 198 AMSNQTLLLPSDKEWDDRRE-GT--GLLVKWANE 228 (240)
T ss_dssp HHTTCCCCCTTSTTGGGGGG-SC--CCEEEECC-
T ss_pred HhCCCEEeccccccccccCC-CC--EEEEEEccC
Confidence 9999999 4 54 578988874
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.22 E-value=1.4e-11 Score=105.33 Aligned_cols=60 Identities=25% Similarity=0.298 Sum_probs=52.3
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC------CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL------NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~------~p~Gvv~V~f~~ 477 (487)
.+++||+|+|||+|+++.+|.. +.+|++||+++|++||.|.+|+|+.. ++.|++||.|..
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~-~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~ 68 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEE-YEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTS 68 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHH-HHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESS
T ss_pred CCCeEEEEECCCCHHHccChHH-HHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECC
Confidence 3578999999999999876554 69999999999999999999999754 357999999976
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.16 E-value=6.9e-11 Score=109.26 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=67.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC-ccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCG-IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G-~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
.+++|||+|||.++|+++|+++|++|| .|. .|+|+.+ .+|+|||+|.+.++|..|+..|||..|..
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~--------~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 185 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVK--------GFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGE 185 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCC--------EEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCce--------EEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 467999999999999999999999999 999 8988764 28999999999999999999999999973
Q ss_pred CCceeEEEEecc
Q 011382 366 DGKIPMSVTQAK 377 (487)
Q Consensus 366 G~~i~I~V~~A~ 377 (487)
|+ +|+|..+.
T Consensus 186 g~--~l~v~~a~ 195 (198)
T 1qm9_A 186 NH--HLRVSFSK 195 (198)
T ss_dssp CC--SCCEEEEC
T ss_pred CC--eEEEEeec
Confidence 44 56777765
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.15 E-value=9.7e-12 Score=106.16 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=62.9
Q ss_pred EEcCCCCCCCHHHHHHHh------------hcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 011382 292 YVTGLPDDVTVEEMVEVF------------SKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD 359 (487)
Q Consensus 292 yV~nLP~diTeeeL~e~F------------sk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ld 359 (487)
++.|||+.+|+++|+++| ++||.|. +|+|++++ +|+++|||||+|.++++|..|+..||
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~--------~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~ln 89 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVE--------EMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLN 89 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEE--------EEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHT
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceE--------EEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHC
Confidence 367888999998888777 9999999 99999985 68999999999999999999999999
Q ss_pred CcccCCCCceeEEEEec
Q 011382 360 GTPFRPDGKIPMSVTQA 376 (487)
Q Consensus 360 g~~~~~G~~i~I~V~~A 376 (487)
|..|. |+ +|+|..+
T Consensus 90 g~~~~-Gr--~i~v~~s 103 (104)
T 1jmt_A 90 NRWFN-GQ--PIHAELS 103 (104)
T ss_dssp TCEET-TE--ECCEEEC
T ss_pred CCEEC-CE--EEEEEEc
Confidence 99998 75 4566543
No 200
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=2.1e-10 Score=98.27 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=64.4
Q ss_pred CCcEEEEcCCCCCC-----------CHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHH
Q 011382 287 VNTHVYVTGLPDDV-----------TVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALAT 355 (487)
Q Consensus 287 ~nt~VyV~nLP~di-----------TeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai 355 (487)
..+.|+|.||.... ++++|+++|++||.|. .|.| .|+ .++|||||+|.+.++|..||
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~--------~v~i-~~~---~~~G~afV~f~~~~~A~~Ai 81 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIR--------KLLL-FDR---HPDGVASVSFRDPEEADYCI 81 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCS--------EEEE-ETT---CTTCEEEEECSCHHHHHHHH
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEe--------EEEE-ecC---CCCEEEEEEECCHHHHHHHH
Confidence 34689999994433 2589999999999999 8965 553 48999999999999999999
Q ss_pred HhcCCcccCCCCceeEEEEeccc
Q 011382 356 QLLDGTPFRPDGKIPMSVTQAKF 378 (487)
Q Consensus 356 ~~Ldg~~~~~G~~i~I~V~~A~~ 378 (487)
..|||..|. |+ +|+|..+..
T Consensus 82 ~~lng~~~~-gr--~l~v~~a~~ 101 (112)
T 2dit_A 82 QTLDGRWFG-GR--QITAQAWDG 101 (112)
T ss_dssp HHSTTCEET-TE--ECEEEECCS
T ss_pred HHcCCCEEC-Cc--EEEEEEeCC
Confidence 999999998 74 578888764
No 201
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.12 E-value=1.2e-10 Score=111.12 Aligned_cols=77 Identities=18% Similarity=0.266 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC-ccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCG-IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G-~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
.+++|||+|||.++|+++|+++|++|| .|. .|+|+.+ .+|||||+|.+.++|..||..|||..|..
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~--------~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~ 216 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVK--------GFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGE 216 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEE--------EEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCee--------EEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCC
Confidence 467999999999999999999999999 999 8988653 37999999999999999999999999973
Q ss_pred CCceeEEEEeccc
Q 011382 366 DGKIPMSVTQAKF 378 (487)
Q Consensus 366 G~~i~I~V~~A~~ 378 (487)
|+ +|+|..+..
T Consensus 217 g~--~l~v~~a~~ 227 (229)
T 2adc_A 217 NH--HLRVSFSKS 227 (229)
T ss_dssp SC--BCEEEECSS
T ss_pred CC--eEEEEEecC
Confidence 44 578887763
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.12 E-value=1e-10 Score=100.04 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=67.1
Q ss_pred CcEEEEcCC--CCCCC--------HHHHHHHhhcCCccccCCCCCCCeEEEEecCCC--CCccceEEEEeCCHHHHHHHH
Q 011382 288 NTHVYVTGL--PDDVT--------VEEMVEVFSKCGIIKEDPETKKPRIKIYVDKET--GMKKGDALVTYLKEPSVALAT 355 (487)
Q Consensus 288 nt~VyV~nL--P~diT--------eeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~t--G~~KG~AfV~F~~~esa~~Ai 355 (487)
.+.|.+.|+ |.++. +++|++.|++||.|. +|+|++++.+ ++++|+|||+|.++++|..|+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~--------~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai 76 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVK--------SIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAM 76 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEE--------EEECCCCBTTBCCTTTTEEEEEESSHHHHHHHH
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEE--------EEEEeccCCCCCcCCcEEEEEEECCHHHHHHHH
Confidence 347899998 55554 368999999999999 9999998754 478999999999999999999
Q ss_pred HhcCCcccCCCCceeEEEEecc
Q 011382 356 QLLDGTPFRPDGKIPMSVTQAK 377 (487)
Q Consensus 356 ~~Ldg~~~~~G~~i~I~V~~A~ 377 (487)
+.|||..|. |+ +|+|..+.
T Consensus 77 ~~lnG~~f~-GR--~i~v~~~~ 95 (105)
T 3v4m_A 77 QGLTGRKFA-NR--VVVTKYCD 95 (105)
T ss_dssp HHHTTCEET-TE--ECEEEEEC
T ss_pred HHhCCCEeC-CC--EEEEEEeC
Confidence 999999998 75 57777664
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.12 E-value=1.3e-10 Score=101.71 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=67.0
Q ss_pred CcEEEEcCCC--CCC---CHHHHHHHhhcCCccccCCCCCCCeEEEEecCC----CCCccceEEEEeCCHHHHHHHHHhc
Q 011382 288 NTHVYVTGLP--DDV---TVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKE----TGMKKGDALVTYLKEPSVALATQLL 358 (487)
Q Consensus 288 nt~VyV~nLP--~di---TeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~----tG~~KG~AfV~F~~~esa~~Ai~~L 358 (487)
.+.|++.|+- .++ .+++|++.|++||.|. +|+|++++. +++++|++||+|.++++|..|++.|
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~--------~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~L 91 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVN--------RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 91 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEE--------EEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEe--------EEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHH
Confidence 3589999993 333 3689999999999999 999999864 4678999999999999999999999
Q ss_pred CCcccCCCCceeEEEEecc
Q 011382 359 DGTPFRPDGKIPMSVTQAK 377 (487)
Q Consensus 359 dg~~~~~G~~i~I~V~~A~ 377 (487)
||..|. |+ .|+|..+.
T Consensus 92 nGr~f~-GR--~i~v~~~~ 107 (118)
T 3ue2_A 92 NGRWFA-GR--KVVAEVYD 107 (118)
T ss_dssp TTCEET-TE--ECEEEEEC
T ss_pred CCCEEC-Cc--EEEEEEcC
Confidence 999998 75 56777664
No 204
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=1.5e-10 Score=99.20 Aligned_cols=62 Identities=19% Similarity=0.340 Sum_probs=58.0
Q ss_pred CCCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 416 ~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
..+++||+|+|||++.++..|++++.++++||+++|++||.|.+|.|+++++.|+++|.|..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~ 73 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRD 73 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECC
Confidence 35678999999999999999999999999999999999999999999999999999999865
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.03 E-value=2.8e-10 Score=116.77 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=64.5
Q ss_pred CCcEEEEcC--CCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccC
Q 011382 287 VNTHVYVTG--LPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (487)
Q Consensus 287 ~nt~VyV~n--LP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~ 364 (487)
...+|||+| |++.+|+++|+++|++||.|. .|.|.. +||||||+|.+.++|..||+.|||.++.
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~--------~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD--------ALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEE--------EEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeE--------EEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 456899998 588999999999999999999 876632 4899999999999999999999999984
Q ss_pred --CCCceeEEEEecc
Q 011382 365 --PDGKIPMSVTQAK 377 (487)
Q Consensus 365 --~G~~i~I~V~~A~ 377 (487)
.|+++.|.|..+.
T Consensus 83 ~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 83 DDLGQKITLYLNFVE 97 (345)
T ss_dssp CTTSCEEECEEEECS
T ss_pred cccCCceEEEEEEee
Confidence 1454566776663
No 206
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.02 E-value=2.1e-10 Score=100.39 Aligned_cols=54 Identities=26% Similarity=0.481 Sum_probs=46.1
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCC--------CceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNV--------EINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p--------~Gvv~V~f~~ 477 (487)
+++||+|+|||+|+|+. +||++||+++|++||.|.+|+|+.... .|++||.|..
T Consensus 19 ps~vl~L~Nm~~~~el~------ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~ 80 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDID------DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSI 80 (118)
T ss_dssp SCCEEEEESCSCGGGCC------TTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESS
T ss_pred CCCEEEEECCCCHHHHH------HHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECC
Confidence 47899999999999875 358999999999999999999986532 3899999865
No 207
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.89 E-value=1.6e-09 Score=92.63 Aligned_cols=55 Identities=25% Similarity=0.413 Sum_probs=45.7
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC-----CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL-----NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~-----~p~Gvv~V~f~~ 477 (487)
.+++||+|+|||+|+++. .++++||+++|++||.|.+|.|+.. ++.|++||.|..
T Consensus 6 ~~s~~l~l~Nm~~~~~l~------dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~ 65 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVD------EDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFER 65 (105)
T ss_dssp SCCSEEEEESSSCSCCC---------CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESS
T ss_pred CCCCEEEEEcCCChHHhh------HHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECC
Confidence 457899999999998864 3578999999999999999999753 468999999865
No 208
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=6.8e-09 Score=88.26 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCceeEEEEecc
Q 011382 298 DDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAK 377 (487)
Q Consensus 298 ~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i~I~V~~A~ 377 (487)
.++|+++|+++|++||.|. .|.|+ +++||||||+|.+.++|..||+.+++ +. |+ +|+|..|.
T Consensus 27 ~~~te~~L~~~F~~~G~V~--------~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~-g~--~l~V~~a~ 88 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVL--------NLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LV-DN--PLKISWLE 88 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEE--------EEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CS-SS--BCEEECSS
T ss_pred CCCCHHHHHHHHHhcCCEE--------EEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CC-CC--eEEEEEcc
Confidence 5699999999999999999 89887 57899999999999999999997665 44 54 57888876
Q ss_pred cc
Q 011382 378 FE 379 (487)
Q Consensus 378 ~~ 379 (487)
..
T Consensus 89 ~~ 90 (100)
T 2d9o_A 89 GQ 90 (100)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 209
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=2e-08 Score=88.56 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=65.9
Q ss_pred ccCCCCcEEEEcCCCCC-CCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCC-HHHHHHHHHhc--
Q 011382 283 FELKVNTHVYVTGLPDD-VTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLK-EPSVALATQLL-- 358 (487)
Q Consensus 283 ~~~~~nt~VyV~nLP~d-iTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~-~esa~~Ai~~L-- 358 (487)
+.+..++-|||+||+++ +|.++|+++|++||.|. .|.+.++.. .|||.|.+ +.+|..|+..|
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~--------~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~ 78 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIK--------WIDFVRGAK------EGIILFKEKAKEALGKAKDANN 78 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEE--------EEECCTTCS------EEEEEESSCHHHHHHHHHHTTT
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEE--------EEEEecCCC------EEEEEECCChHHHHHHHHHhhc
Confidence 45578899999999999 99999999999999999 999877743 49999999 78999999999
Q ss_pred CCcccCCCCceeEEEEecc
Q 011382 359 DGTPFRPDGKIPMSVTQAK 377 (487)
Q Consensus 359 dg~~~~~G~~i~I~V~~A~ 377 (487)
++..|. |. .++++...
T Consensus 79 ~~~~i~-g~--~~~~evL~ 94 (121)
T 1owx_A 79 GNLQLR-NK--EVTWEVLE 94 (121)
T ss_dssp SCBCTT-SS--SEEEEECC
T ss_pred CCcEEe-Cc--EEEEEECC
Confidence 477887 64 45666554
No 210
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.71 E-value=1.7e-08 Score=87.70 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=60.7
Q ss_pred CcEEEEcCCC--CCC--------CHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHh
Q 011382 288 NTHVYVTGLP--DDV--------TVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQL 357 (487)
Q Consensus 288 nt~VyV~nLP--~di--------TeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~ 357 (487)
.+.|.+.|+= .+. .+++|++.|++||.|. +|.|.++ + ++|||||.|.+.++|..||+.
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~--------~v~i~~~--~--~~G~~fV~f~~~e~A~~Ai~~ 74 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVI--------HIYVDKN--S--AQGNVYVKCPSIAAAIAAVNA 74 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCS--------EEEECTT--C--TTCCEEEECSSHHHHHHHHHH
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEE--------EEEEecC--C--CcEEEEEEECCHHHHHHHHHH
Confidence 3468888883 221 1357899999999999 8988655 2 599999999999999999999
Q ss_pred cCCcccCCCCceeEEEEecc
Q 011382 358 LDGTPFRPDGKIPMSVTQAK 377 (487)
Q Consensus 358 Ldg~~~~~G~~i~I~V~~A~ 377 (487)
|||..|. |+ .|+|..+.
T Consensus 75 lnG~~f~-GR--~i~v~~~~ 91 (114)
T 3s6e_A 75 LHGRWFA-GK--MITAAYVP 91 (114)
T ss_dssp HTTCEET-TE--ECEEEEEC
T ss_pred hCCCEEC-CE--EEEEEEEc
Confidence 9999998 75 57787765
No 211
>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} SCOP: d.76.1.1
Probab=98.63 E-value=2.2e-08 Score=81.75 Aligned_cols=62 Identities=18% Similarity=0.287 Sum_probs=55.2
Q ss_pred CCCccceEEEcCCCcccCCCCHHHHHHHHHcCcccCCcceeccCccCcccCCCchhhhhcccc
Q 011382 20 TAGEEGWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQGRSEWQPLSSIPQFLSGISQ 82 (487)
Q Consensus 20 ~~~~~~Wyy~~~ngq~~GP~s~~eL~~~~~~G~i~~~TlVW~eGm~~W~pl~~v~eL~~~~~~ 82 (487)
...+..|||++.+|+.+|||+..+|+.++..|+++.+.+||+.|-..|.++. +.+|...+.+
T Consensus 14 ~~~~~~W~Y~Dp~g~iQGPFs~~~M~~W~~~GyF~~~L~Vrr~~~~~~~~i~-L~dll~~~g~ 75 (78)
T 1wh2_A 14 DKEKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESAVL-LTDVLRLSGP 75 (78)
T ss_dssp CSSSCCEEEECTTSCEEEEECHHHHHHHHTTTSSCSCCEEEETTSCTTSCEE-HHHHHHHSSC
T ss_pred CcccCeEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEeCCCCcceeh-HHHHHHHHCC
Confidence 4457789999999999999999999999999999999999999999999988 7777665543
No 212
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.62 E-value=3.3e-08 Score=84.09 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=45.4
Q ss_pred CeEEEeeccC-Chhhhcc----------ch---hhHHHHHHHHHHHh-ccCcceEEEEEecC---CCCceEEEEEEe
Q 011382 419 PATVILRFMF-TPAEMRA----------DE---NLRSELEADVQEEC-VKIGPVDSVKVMKL---NVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf-~p~el~~----------Dp---~~~~ei~EDVreEC-~KfG~V~~V~V~~~---~p~Gvv~V~f~~ 477 (487)
++||+|+||| +|+.... +. +.+.+|.+||+++| ++||.|.+|.|+.. ++.|++||.|..
T Consensus 1 s~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~ 77 (104)
T 1jmt_A 1 SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRR 77 (104)
T ss_dssp CCEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESC
T ss_pred CcEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECC
Confidence 4799999999 5754322 11 34578999999999 99999999999754 368999999865
No 213
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.57 E-value=1.7e-07 Score=83.99 Aligned_cols=116 Identities=7% Similarity=-0.042 Sum_probs=75.6
Q ss_pred eEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHH
Q 011382 325 RIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEK 404 (487)
Q Consensus 325 ~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~k 404 (487)
.++|.++. .+++|||||+|.++++|++|++.+++.....| .+.+............ .
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~---------------- 58 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEG--S---------------- 58 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCC---EEEEETTTTEEEEECC--C----------------
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCC---cccccCcccccccccc--c----------------
Confidence 47888884 47999999999999999999988887554422 1222222111000000 0
Q ss_pred hccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 405 MLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 405 l~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
.... ........++|+|.|+ |.++ .++||++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 59 ~~~~---~~~~~~~~~~l~v~nl--~~~~---------~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~ 121 (158)
T 2kn4_A 59 HHHH---HHMDVEGMTSLKVDNL--TYRT---------SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 121 (158)
T ss_dssp CCSS---CCCCCCBCCEEEEESC--CTTC---------CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESB
T ss_pred cccc---cccCCCCCCEEEEeCC--CCCC---------CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECC
Confidence 0000 0111234579999999 2222 35789999999999999999643 468999999876
No 214
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.49 E-value=2.2e-07 Score=77.91 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=57.1
Q ss_pred cEEEEcCCCC----CCCH----HHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCC
Q 011382 289 THVYVTGLPD----DVTV----EEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG 360 (487)
Q Consensus 289 t~VyV~nLP~----diTe----eeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg 360 (487)
.+|+|.-+|. ..-. .+|.+.|++||.|. .++++.|+ +||+|.+.++|..||+ |||
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi--------~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG 70 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVI--------LIRFVEDK--------MWVTFLEGSSALNVLS-LNG 70 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEE--------EEEECSSS--------EEEEESSHHHHHHGGG-GTT
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeE--------EEEEecCC--------EEEEECChHHHHHHHh-cCC
Confidence 4888887762 2333 57999999999999 89998763 8999999999999998 999
Q ss_pred cccCCCCceeEEEEecc
Q 011382 361 TPFRPDGKIPMSVTQAK 377 (487)
Q Consensus 361 ~~~~~G~~i~I~V~~A~ 377 (487)
..+. |+ .|+|+.+.
T Consensus 71 ~~v~-Gr--~LkV~lkt 84 (91)
T 2dnr_A 71 KELL-NR--TITIALKS 84 (91)
T ss_dssp CEET-TE--EEEEEECC
T ss_pred eEeC-Ce--EEEEEeCC
Confidence 9998 74 57888776
No 215
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.44 E-value=5.1e-07 Score=80.50 Aligned_cols=116 Identities=9% Similarity=-0.026 Sum_probs=79.6
Q ss_pred EEEEecCCCCCccceEEEEeCCHHHHHHHHHhc-CCcccCCCCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHH
Q 011382 326 IKIYVDKETGMKKGDALVTYLKEPSVALATQLL-DGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEK 404 (487)
Q Consensus 326 ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~L-dg~~~~~G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~k 404 (487)
..|..+ ....+|+++|+|.+++.|++|++.| ||..+. | .|.|..+...........
T Consensus 3 ~al~l~--g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~-G---~~~~~~a~~~~~~~~~~~----------------- 59 (150)
T 2i2y_A 3 YKLILN--GKTLKGETTTEAVDAATAEKVFKQYANDNGVD-G---EWTYDDATKTFTVTEGSH----------------- 59 (150)
T ss_dssp EEEEEC--CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCC-C---EEEEETTTTEEEEECSSS-----------------
T ss_pred eEeeec--cccccccceeeecCHHHHHHHHHHHhcCCCCC-C---ceecccccCccccccccc-----------------
Confidence 345554 4678999999999999999999999 999998 6 467776653221100000
Q ss_pred hccCCCCCCCCCCCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 405 MLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 405 l~~w~~~~~~~~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
..-...........++|++.||- .++ .+++|++.|++||.|.+|.|... +.|+++|.|..
T Consensus 60 -~~~~~~~~~~~~~~~~l~V~nl~--~~~---------t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~ 119 (150)
T 2i2y_A 60 -HHHHHMHRDSCPLDCKVYVGNLG--NNG---------NKTELERAFGYYGPLRSVWVARN-PPGFAFVEFED 119 (150)
T ss_dssp -SCCCCSCSSSSTTSCEEEEESCC--SCC---------SCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESS
T ss_pred -cccccccccCCCCCCEEEEeCCC--CCC---------CHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECC
Confidence 00000001122346799999992 222 24679999999999999999754 79999999965
No 216
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.37 E-value=6.2e-07 Score=84.92 Aligned_cols=68 Identities=25% Similarity=0.264 Sum_probs=58.2
Q ss_pred CCCHHHHHHHhhcCCccccCCCCCCCeEEEEecC----CCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCCceeEEEE
Q 011382 299 DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDK----ETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVT 374 (487)
Q Consensus 299 diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk----~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i~I~V~ 374 (487)
+-.+++|++.|++||.|. +++|.++. .+|+++|++||+|.+.++|.+||+.|||..|. |+. |.|.
T Consensus 140 ~e~~~dl~~e~~~~G~v~--------~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~-gr~--i~~~ 208 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVN--------RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA-GRK--VVAE 208 (222)
T ss_dssp TTHHHHHHHHHTTTSCEE--------EEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS-SSB--CEEE
T ss_pred HHHHHHHHHHHHccCCeE--------EEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC-CeE--EEEE
Confidence 345678999999999999 99998654 34599999999999999999999999999998 864 6776
Q ss_pred ecc
Q 011382 375 QAK 377 (487)
Q Consensus 375 ~A~ 377 (487)
...
T Consensus 209 ~~~ 211 (222)
T 3dxb_A 209 VYD 211 (222)
T ss_dssp ECC
T ss_pred EcC
Confidence 654
No 217
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.25 E-value=6.9e-07 Score=75.40 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=55.6
Q ss_pred cEEEEcCCCCC-----CCH----HHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 011382 289 THVYVTGLPDD-----VTV----EEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD 359 (487)
Q Consensus 289 t~VyV~nLP~d-----iTe----eeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ld 359 (487)
.+|+|.-++.+ .-. .+|.+.|+.||.|. .+++..|+ +||+|.+.++|..||. ||
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi--------lvr~v~d~--------~fVtF~d~~sAl~AI~-ld 78 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIV--------LVRINQGQ--------MLVTFADSHSALSVLD-VD 78 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCS--------EEEEETTE--------EEEECSCSHHHHHHHH-GG
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEE--------EEEEecCc--------EEEEEcChHHHHHHHh-cC
Confidence 48999988743 222 46889999999998 89999874 9999999999999998 99
Q ss_pred CcccCCCCceeEEEEe
Q 011382 360 GTPFRPDGKIPMSVTQ 375 (487)
Q Consensus 360 g~~~~~G~~i~I~V~~ 375 (487)
|..+. |+ .|+|+.
T Consensus 79 G~~v~-Gr--~L~V~~ 91 (95)
T 1ufw_A 79 GMKVK-GR--AVKISG 91 (95)
T ss_dssp GSEET-TE--EEEEEC
T ss_pred CeeeC-Ce--EEEEec
Confidence 99998 75 566664
No 218
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.06 E-value=4.5e-06 Score=78.99 Aligned_cols=54 Identities=26% Similarity=0.510 Sum_probs=44.9
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC--------CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL--------NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~--------~p~Gvv~V~f~~ 477 (487)
.++++.|.||++++++. .++.+||+++|++||.|.+|.|++. +..|++||.|..
T Consensus 123 ~s~v~~l~n~v~~~e~~------~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~ 184 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDID------DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSI 184 (222)
T ss_dssp BCSEEEEESSCCGGGCC------TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESS
T ss_pred ccccchhhcCCCHHHHH------HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECC
Confidence 45799999999998875 3578999999999999999999743 345889998755
No 219
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.01 E-value=3.4e-06 Score=88.92 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=45.5
Q ss_pred HHHHhccCCCCCCCC--CCCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec----CCCCceEEEE
Q 011382 401 VEEKMLGWGGRDDAK--LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK----LNVEINCILI 474 (487)
Q Consensus 401 l~~kl~~w~~~~~~~--~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~----~~p~Gvv~V~ 474 (487)
+...+..|.+..+.. ..+.++|+|.||-. ++ ..++|++.|++||.|..|.|+. ..+.|+|||.
T Consensus 82 ~~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~--~~---------te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~ 150 (437)
T 3pgw_S 82 VETELKMWDPHNDPNAQGDAFKTLFVARVNY--DT---------TESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE 150 (437)
T ss_pred HHHhhhhcCCcccccccCCCCCEEEEeCCCC--CC---------CHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEe
Confidence 334455565432211 22457999999922 21 3578999999999999999963 3468999999
Q ss_pred EEe
Q 011382 475 IFL 477 (487)
Q Consensus 475 f~~ 477 (487)
|..
T Consensus 151 F~~ 153 (437)
T 3pgw_S 151 YEH 153 (437)
T ss_pred ecc
Confidence 876
No 220
>3k3v_A Protein SMY2; GYF domain, poly-proline binding, domain SWAP, ragnya, phosphoprotein, protein binding; 1.80A {Saccharomyces cerevisiae} PDB: 3fma_A
Probab=97.62 E-value=1.8e-05 Score=67.32 Aligned_cols=55 Identities=20% Similarity=0.416 Sum_probs=48.0
Q ss_pred CccceEEEcCCCcccCCCCHHHHHHHHHcCcccCCcceeccCc--------cCcccCCCchhh
Q 011382 22 GEEGWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQGR--------SEWQPLSSIPQF 76 (487)
Q Consensus 22 ~~~~Wyy~~~ngq~~GP~s~~eL~~~~~~G~i~~~TlVW~eGm--------~~W~pl~~v~eL 76 (487)
.+..|||++..|+.+|||+..+|...+..|+++.+-+||+.+- +.|.+|+++-.+
T Consensus 14 ~e~~W~Y~Dp~G~vQGPFs~~~M~~W~~~GYF~~~L~VrR~~~~~~p~g~d~~F~~Lgel~~~ 76 (100)
T 3k3v_A 14 VESSWRYIDTQGQIHGPFTTQMMSQWYIGGYFASTLQISRLGSTPETLGINDIFITLGELMTK 76 (100)
T ss_dssp -CCEEEEECTTSCEEEEEEHHHHHHHHHTTCCCTTCEEEECCSSCCSSSCBTCCEEHHHHHHH
T ss_pred ccceEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEcCCCCCccCCCCceeeHHHHHHH
Confidence 4788999999999999999999999999999999999999864 378888776543
No 221
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00059 Score=59.07 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=62.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcC-----CccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcc
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKC-----GIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP 362 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~-----G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~ 362 (487)
.++|-+-|||..++...|+.+..++ |.|. +|.|..| -|-|+|+|.+...|-+|.-.|||.+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~--------KI~L~pD------H~GAivef~d~~~AgKasLaL~G~e 86 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIR--------KILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQ 86 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCS--------EEEEETT------TTEEEEECSCHHHHHHHHHHHSSEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCcccee--------EEEEecC------CCceEEEEccchhhHHHHhhcCCee
Confidence 3478888999999999999999999 9988 8888877 3569999999999999998899999
Q ss_pred cCCCCceeEEEEec
Q 011382 363 FRPDGKIPMSVTQA 376 (487)
Q Consensus 363 ~~~G~~i~I~V~~A 376 (487)
|. |+ +|++...
T Consensus 87 f~-gr--~Lr~gTv 97 (117)
T 2l9w_A 87 FQ-GK--VIRSGTI 97 (117)
T ss_dssp ET-TE--EEEEECH
T ss_pred ec-Ce--EEEecCH
Confidence 98 75 5676644
No 222
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.08 E-value=0.00047 Score=54.62 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=40.3
Q ss_pred eEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC--CCCceEEEEEEe
Q 011382 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL--NVEINCILIIFL 477 (487)
Q Consensus 420 ~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~--~p~Gvv~V~f~~ 477 (487)
++|++.|| |.... +-+...+++|++.|++||.|.+|.|.+. .+.|+++|.|..
T Consensus 2 ~~l~V~nL--p~~~~---~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~ 56 (81)
T 2krb_A 2 SVIVVDNV--PQVGP---DRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYAS 56 (81)
T ss_dssp CEEEEESC--CCCCT---TTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESS
T ss_pred CEEEEeCC--CCCcH---HHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECC
Confidence 58999999 32221 1123478999999999999999999732 468999999975
No 223
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.98 E-value=0.0016 Score=54.74 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=39.0
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
.++++|+|+||- .+. .++||++.|++||.|.+|.|... .|+++|.|..
T Consensus 13 ~p~~~l~V~nLp--~~~---------te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~ 60 (101)
T 2cq1_A 13 APSRVLHIRKLP--GEV---------TETEVIALGLPFGKVTNILMLKG--KNQAFLELAT 60 (101)
T ss_dssp SCCSEEEEESCC--TTC---------CHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESS
T ss_pred CCCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECC
Confidence 456899999993 222 35789999999999999998754 8999999865
No 224
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=96.97 E-value=0.001 Score=56.33 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=39.4
Q ss_pred CCCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 416 ~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
..++++|+++|+- .+. .++||++.|++||.|++|.|.. ..|+++|.|..
T Consensus 18 ~~ps~~l~V~NLp--~~~---------te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~ 66 (100)
T 3r27_A 18 TPASPVVHIRGLI--DGV---------VEADLVEALQEFGPISYVVVMP--KKRQALVEFED 66 (100)
T ss_dssp CCCCSEEEEESCC--TTC---------CHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESS
T ss_pred CCCCcEEEEeCCC--CCC---------CHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECC
Confidence 3467899999992 222 3578999999999999999974 47999999864
No 225
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.93 E-value=0.0012 Score=55.73 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=38.8
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
.++++|+|+|| |.+. .++||++.|++||.|.+|.|.. ..|+++|.|..
T Consensus 13 ~p~~~l~V~nL--p~~~---------te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~ 60 (104)
T 1wex_A 13 SVSPVVHVRGL--CESV---------VEADLVEALEKFGTICYVMMMP--FKRQALVEFEN 60 (104)
T ss_dssp CCCSEEEEESC--CSSC---------CHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESS
T ss_pred CCCCEEEEeCC--CCCC---------CHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECC
Confidence 45689999998 2222 3578999999999999999865 37999999865
No 226
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.85 E-value=0.00048 Score=60.57 Aligned_cols=89 Identities=8% Similarity=-0.044 Sum_probs=40.2
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccCCCCceeEEEEeccccccchhhhhhhhhHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q 011382 340 DALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIP 419 (487)
Q Consensus 340 ~AfV~F~~~esa~~Ai~~Ldg~~~~~G~~i~I~V~~A~~~~kg~~~~~kk~~~~kkkklqkl~~kl~~w~~~~~~~~~~~ 419 (487)
++|++|.+...+..|++.|+|.... |+. .+. +... .......
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~-g~~---~~~---------------------------------~~~~-~~~~~~~ 47 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQM-GRG---SMS---------------------------------YGRP-PPDVEGM 47 (135)
T ss_dssp ---------------------------------CC---------------------------------SCCS-CSSGGGC
T ss_pred cccccccCCCchhhhhhhccCCCCC-CCC---CCC---------------------------------cCCC-CCCCCCC
Confidence 5789999999999999999887765 321 000 0000 0111235
Q ss_pred eEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 420 ~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
++|+|.||- .++ .++||++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 48 ~~l~V~nLp--~~~---------te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~ 98 (135)
T 2lea_A 48 TSLKVDNLT--YRT---------SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 98 (135)
T ss_dssp CCEEEECCC--SSC---------HHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSC
T ss_pred CEEEEeCCC--CCC---------CHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECC
Confidence 689999992 221 46889999999999999999643 468999999865
No 227
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=96.85 E-value=0.0015 Score=53.23 Aligned_cols=50 Identities=14% Similarity=0.054 Sum_probs=39.5
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEee
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFLL 478 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~~ 478 (487)
.++.+|++.|+ |.+. .++||++.|++||.|.+|.|..+ +.|+++|.|...
T Consensus 9 ~~~~~l~V~~L--p~~~---------te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~ 58 (89)
T 3d2w_A 9 HHGSKVFVGRC--TEDM---------TAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADD 58 (89)
T ss_dssp --CCEEEEESC--CTTC---------CHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCH
T ss_pred CCCCEEEEeCC--CCCC---------CHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCH
Confidence 34679999999 2222 35789999999999999999754 789999999763
No 228
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=96.73 E-value=0.0011 Score=52.79 Aligned_cols=50 Identities=8% Similarity=-0.020 Sum_probs=39.3
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~~ 478 (487)
..++|++.|+- .+. .+++|++.|++||.|.+|.|... .+.|+++|.|...
T Consensus 10 ~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 63 (87)
T 3s7r_A 10 DAGKMFVGGLS--WDT---------SKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDA 63 (87)
T ss_dssp CTTEEEEECCC--TTC---------CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESST
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCH
Confidence 45799999992 222 35789999999999999999743 3479999998764
No 229
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.72 E-value=0.0018 Score=55.31 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=38.3
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
..++|+++|| |.+. .++||++.|++||.|++|.|... .|+++|.|..
T Consensus 15 ~~~~LfV~nL--p~~v---------te~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~ 61 (105)
T 1sjq_A 15 PSRVIHIRKL--PIDV---------TEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNT 61 (105)
T ss_dssp CCCEEEECSC--CTTS---------CHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESS
T ss_pred CCCEEEEeCC--CCCC---------CHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECC
Confidence 4679999999 2222 35789999999999999999754 7999999965
No 230
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.69 E-value=0.0022 Score=56.21 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=41.7
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec-CCCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK-LNVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~-~~p~Gvv~V~f~~ 477 (487)
.+.++|++.|+- ..+. ..+|++.|++.|++||.|.+|.|.. ....|+++|.|..
T Consensus 27 ~p~~~LfV~nL~--~~~~-----e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~ 81 (127)
T 2a3j_A 27 EPSQVVLITNIN--PEVP-----KEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFAT 81 (127)
T ss_dssp SCCSEEEEESCC--TTSC-----HHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESS
T ss_pred CCCCEEEEeCCC--CCCC-----HHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECC
Confidence 346799999992 1111 1468888999999999999999864 3578999999975
No 231
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.69 E-value=0.00096 Score=58.21 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=38.9
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
.++++|+|+||- .+. .++||++.|++||.|.+|.|... .|+++|.|..
T Consensus 29 ~ps~~LfVgNLp--~~v---------te~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~ 76 (119)
T 2ad9_A 29 VPSRVIHIRKLP--IDV---------TEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNT 76 (119)
T ss_dssp SCCSEEEEESCC--TTC---------CHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSC
T ss_pred CCCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECC
Confidence 356899999992 222 35789999999999999999764 7999999865
No 232
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.67 E-value=0.0079 Score=50.22 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=61.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCC--CccceEEEEeCCHHHHHHHHHhcCCcccCC-
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETG--MKKGDALVTYLKEPSVALATQLLDGTPFRP- 365 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG--~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~- 365 (487)
++|-|.+||+.+|++++.+.++....+. ....+.-+.+. ..-.-|||.|.+.+++..-.+.+||+.|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d--------~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHD--------YFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEE--------EEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccce--------EEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 5899999999999999999999887654 44444332222 123569999999999999999999999985
Q ss_pred -CCceeEEEEecccc
Q 011382 366 -DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 -G~~i~I~V~~A~~~ 379 (487)
|...+-.|+.|-++
T Consensus 74 kg~~~~a~VE~AP~q 88 (91)
T 1uw4_A 74 KGQEYPAIVEFAPFQ 88 (91)
T ss_dssp TCCEEECEEEECSSC
T ss_pred CCCEeeeEEEEcCCC
Confidence 22233356766654
No 233
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.63 E-value=0.003 Score=53.38 Aligned_cols=48 Identities=6% Similarity=-0.002 Sum_probs=38.2
Q ss_pred CCCeEEEeeccCChh-hhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPA-EMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~-el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
.++++|+|+||- . +. .++||++.|++||.|.+|.|... .|+++|.|..
T Consensus 13 ~p~~~l~V~nLp--~~~~---------te~dL~~lF~~fG~V~~v~i~~~--kg~aFVef~~ 61 (102)
T 1x4d_A 13 ETRRVVHIMDFQ--RGKN---------LRYQLLQLVEPFGVISNHLILNK--INEAFIEMAT 61 (102)
T ss_dssp CCCCEEEEESCC--CSSS---------HHHHHHTTTGGGSCEEEEEECSS--SSCEEEEESS
T ss_pred CCCCEEEEeCCC--CCcC---------CHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECC
Confidence 356899999992 2 21 46789999999999999999643 5899999864
No 234
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=96.62 E-value=0.0018 Score=59.68 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=39.0
Q ss_pred eEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEee
Q 011382 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFLL 478 (487)
Q Consensus 420 ~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~~ 478 (487)
..|+|.||... + .+++|++.|++||.|.+|+|+.+.+.|+++|.|...
T Consensus 47 l~l~VgNL~~~--v---------ted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~ 94 (164)
T 1sjr_A 47 LRIIVENLFYP--V---------TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 94 (164)
T ss_dssp EEEEECSCCSC--C---------CHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCH
T ss_pred EEEEEeCcCCC--C---------CHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCH
Confidence 35779999432 1 246899999999999999999888889999999763
No 235
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=96.60 E-value=0.0017 Score=54.23 Aligned_cols=57 Identities=9% Similarity=-0.006 Sum_probs=42.1
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC--CCCceEEEEEEeec
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL--NVEINCILIIFLLE 479 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~--~p~Gvv~V~f~~~~ 479 (487)
.+++|++.|+-. ... +. +..++++|++.|++||.|.+|.|... .+.|+++|.|...+
T Consensus 14 ~~~~l~V~nLp~--~~~--~~-~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~ 72 (105)
T 2nlw_A 14 IDSVIVVDNVPQ--VGP--DR-LEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPA 72 (105)
T ss_dssp CCSEEEEESCCC--CCT--TT-TTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSS
T ss_pred CCCEEEEeCCCc--chh--hh-hHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHH
Confidence 357999999932 211 11 13378999999999999999999732 45799999997643
No 236
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=96.58 E-value=0.00038 Score=56.91 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=38.2
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCc-ceEEEEEec----CCCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIG-PVDSVKVMK----LNVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG-~V~~V~V~~----~~p~Gvv~V~f~~ 477 (487)
+++|+|+|| |.+. .++||++.|++|| .|.+|.|.. ..+.|+|+|.|..
T Consensus 1 S~~i~v~nL--p~~~---------te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~ 53 (91)
T 2lxi_A 1 SNIVMLRML--PQAA---------TEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH 53 (91)
T ss_dssp CCEEEEETC--CSSC---------CHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSS
T ss_pred CCEEEEeCC--CCCC---------CHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecC
Confidence 468999999 2222 3578999999999 899999864 3468999999875
No 237
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.57 E-value=0.0024 Score=51.49 Aligned_cols=51 Identities=18% Similarity=0.131 Sum_probs=40.0
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEee
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~~ 478 (487)
...++|+|.||- .++ .++||++.|++||.|.+|.|... .+.|+++|.|...
T Consensus 14 ~~~~~l~V~nlp--~~~---------t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 68 (94)
T 2e5h_A 14 PSKSTVYVSNLP--FSL---------TNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 68 (94)
T ss_dssp CCTTSEEEESCC--TTS---------CHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCH
T ss_pred CCCCEEEEECCC--CCC---------CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 346789999993 222 35789999999999999999753 4579999999763
No 238
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.51 E-value=0.0039 Score=51.51 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=39.7
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
...++|+|.||- .++ .++||++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 11 ~~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 64 (106)
T 2dgp_A 11 HDAIKLFIGQIP--RNL---------DEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCE 64 (106)
T ss_dssp TTCEEEEEESCC--TTC---------CHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESS
T ss_pred CCCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECC
Confidence 456899999992 222 35789999999999999999753 367999999975
No 239
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=96.48 E-value=0.0026 Score=52.87 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=38.0
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
.++|+++|| |.++ .++||++.|++||.|.+|.|... .+.|+|+|.|..
T Consensus 19 gt~lfV~nL--p~~~---------te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~ 70 (99)
T 4fxv_A 19 GTNLIVNYL--PQNM---------TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVT 70 (99)
T ss_dssp CSEEEEESC--CTTC---------CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESS
T ss_pred CCEEEEeCC--CCCC---------CHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECC
Confidence 458999999 3332 35789999999999999999743 356899999875
No 240
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.46 E-value=0.0043 Score=50.56 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=39.1
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
.+++|+|.||- .++ .++||++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 7 ~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 59 (99)
T 1whw_A 7 GSGRLFVRNLS--YTS---------SEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMF 59 (99)
T ss_dssp SCEEEEEECCC--TTC---------CHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESS
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECC
Confidence 46899999992 222 35789999999999999999643 367999999976
No 241
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=96.45 E-value=0.0045 Score=52.48 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=38.6
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
+.++|++.|+-. ++ .+++|++.|++||.|.+|.|+.. .+.|+++|.|..
T Consensus 5 p~~~lfV~nL~~--~~---------te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~ 57 (110)
T 3s8s_A 5 PLKEVTFARLND--NV---------RETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTS 57 (110)
T ss_dssp CCCEEEEESCCT--TC---------CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCcEEEEECCCC--CC---------CHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECC
Confidence 467999999922 21 35789999999999999998642 357999999875
No 242
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.43 E-value=0.0022 Score=51.44 Aligned_cols=49 Identities=16% Similarity=0.069 Sum_probs=39.6
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~~ 478 (487)
.+++|++.|| |.++ .++||++.|++||.|.+|.|..+ +.|+++|.|...
T Consensus 4 ~~~~l~V~nL--p~~~---------te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~ 52 (88)
T 1wf0_A 4 GSSGVFVGRC--TGDM---------TEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADD 52 (88)
T ss_dssp CCCEEEEESC--CSSS---------CHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCH
T ss_pred CCcEEEEeCC--CCCC---------CHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCH
Confidence 3579999999 2222 35789999999999999999754 789999998763
No 243
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=96.42 E-value=0.003 Score=50.12 Aligned_cols=48 Identities=8% Similarity=0.055 Sum_probs=38.6
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCC-----CCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLN-----VEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~-----p~Gvv~V~f~~ 477 (487)
+++|+|.|+ |.++ .++||++.|++||.|.+|.|.... ..|+++|.|..
T Consensus 4 ~~~l~V~nl--p~~~---------t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~ 56 (88)
T 4a8x_A 4 PTKVHIGRL--TRNV---------TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFEN 56 (88)
T ss_dssp CCEEEEECC--CTTC---------CHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESS
T ss_pred CCEEEEeCC--CCCC---------CHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEec
Confidence 568999999 2222 357899999999999999996543 78999999976
No 244
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.40 E-value=0.0045 Score=50.91 Aligned_cols=50 Identities=10% Similarity=-0.061 Sum_probs=39.4
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
...++|+|.||- .++ .++||++.|++||.|.+|.|... ...|+++|.|..
T Consensus 11 ~~~~~l~V~nLp--~~~---------t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 64 (103)
T 2dnm_A 11 DGMITLKVDNLT--YRT---------SPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHD 64 (103)
T ss_dssp SCCCEEEEESCC--TTC---------CHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESS
T ss_pred CCCeEEEEeCCC--CCC---------CHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECC
Confidence 346799999992 221 35789999999999999999743 357999999975
No 245
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.39 E-value=0.0058 Score=49.28 Aligned_cols=49 Identities=10% Similarity=0.048 Sum_probs=39.2
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
.+++|+|.||- .++ .++||++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 4 ~~~~l~v~nlp--~~~---------t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 56 (95)
T 2dnz_A 4 GSSGLYVGSLH--FNI---------TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSD 56 (95)
T ss_dssp CCCEEEEESCC--TTC---------CHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESC
T ss_pred CCcEEEEeCCC--CCC---------CHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECC
Confidence 46799999992 221 35789999999999999999753 357999999975
No 246
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=96.38 E-value=0.0059 Score=51.46 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=39.8
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~~ 478 (487)
..++|+|.||- .++ .++||++.|++||.|.+|.|... ...|+++|.|...
T Consensus 39 ~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 92 (118)
T 2khc_A 39 EGCNLFIYHLP--QEF---------TDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNP 92 (118)
T ss_dssp CSEEEEEECSC--TTC---------CHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESS
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCH
Confidence 46899999992 222 35789999999999999999643 4589999999864
No 247
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.34 E-value=0.0035 Score=52.59 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=39.0
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec---CCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK---LNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~---~~p~Gvv~V~f~~ 477 (487)
..++|++.|+-. +. .+++|++.|++||+|.+|.|.. ..+.|+++|.|..
T Consensus 10 ~~~~lfV~~Lp~--~~---------te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~ 61 (103)
T 1s79_A 10 KNRSVYIKGFPT--DA---------TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDS 61 (103)
T ss_dssp GGGCEEEECCCT--TC---------CHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESS
T ss_pred CCCEEEEECCCC--CC---------CHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECC
Confidence 357899999922 21 3578999999999999999975 3468999999975
No 248
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=96.33 E-value=0.004 Score=49.11 Aligned_cols=49 Identities=6% Similarity=0.028 Sum_probs=38.8
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
..++|++.|+- .++ .+++|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 6 ~~~~l~V~nl~--~~~---------~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 58 (85)
T 3mdf_A 6 TKRVLYVGGLA--EEV---------DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFEL 58 (85)
T ss_dssp CSSEEEEECCC--TTC---------CHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESS
T ss_pred CCCEEEEECCC--CCC---------CHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECC
Confidence 45799999992 222 35789999999999999999543 358999999975
No 249
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.32 E-value=0.008 Score=49.40 Aligned_cols=50 Identities=10% Similarity=0.132 Sum_probs=39.6
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC--CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL--NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~--~p~Gvv~V~f~~ 477 (487)
...++|+|.|| |.++ .+++|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 13 ~~~~~l~V~nl--p~~~---------t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~ 64 (103)
T 2cq3_A 13 STPKRLHVSNI--PFRF---------RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFEN 64 (103)
T ss_dssp CCCCEEEEESC--CTTC---------CHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESC
T ss_pred CCCCEEEEeCC--CCCC---------CHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECC
Confidence 34689999999 2222 35789999999999999999743 358999999975
No 250
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.31 E-value=0.0064 Score=48.10 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=39.2
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~~ 478 (487)
.+++|+|.|+ |.++ .+++|++.|++||.|.+|.|... .+.|+++|.|...
T Consensus 4 ~~~~l~v~nl--p~~~---------t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 57 (85)
T 1x4e_A 4 GSSGLYIRGL--QPGT---------TDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSP 57 (85)
T ss_dssp CCCEEEEESC--CTTC---------CHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCH
T ss_pred CCcEEEEeCC--CCCC---------CHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCH
Confidence 4579999998 2222 35789999999999999998643 3589999999763
No 251
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=96.31 E-value=0.0043 Score=55.92 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=38.8
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
...++|+|.||-. .+ ..++|++.|++||.|.+|.|+.. .+.|+++|.|..
T Consensus 70 ~~~~~l~V~nLp~--~~---------t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 123 (165)
T 1rk8_A 70 VEGWILFVTSIHE--EA---------QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYET 123 (165)
T ss_dssp C-CEEEEEESCCT--TC---------CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESS
T ss_pred CCCCEEEEeCCCC--CC---------CHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECC
Confidence 3467899999932 22 35789999999999999999744 247999999875
No 252
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=96.30 E-value=0.0059 Score=49.63 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=38.3
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
+++|+|.|+- .++ .++||++.|++||.|.+|.|... ...|+++|.|..
T Consensus 2 ~~~l~V~nLp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 53 (96)
T 2x1f_A 2 SRVVYLGSIP--YDQ---------TEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRD 53 (96)
T ss_dssp CSEEEEESCC--TTC---------CHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESS
T ss_pred CcEEEEECCC--CCC---------CHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECC
Confidence 5789999992 222 35789999999999999999743 347999999975
No 253
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.30 E-value=0.01 Score=48.40 Aligned_cols=49 Identities=12% Similarity=-0.012 Sum_probs=39.0
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
..++|+|.||- .++ .++||++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 9 ~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 61 (99)
T 2dgs_A 9 KSNKIFVGGIP--HNC---------GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 61 (99)
T ss_dssp SCCEEEEESCC--SSC---------CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESS
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECC
Confidence 46799999992 222 35789999999999999999743 368999999975
No 254
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.26 E-value=0.0045 Score=51.44 Aligned_cols=49 Identities=16% Similarity=0.113 Sum_probs=39.1
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
..++|+|.||- .++ .+++|++.|++||.|.+|.|... .+.|++||.|..
T Consensus 14 ~~~~l~V~nLp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (111)
T 1x4h_A 14 EGKTVFIRNLS--FDS---------EEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMT 66 (111)
T ss_dssp CCCCEEEESCC--TTC---------CHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESS
T ss_pred CCCEEEEECCC--CCC---------CHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECC
Confidence 46789999992 221 35789999999999999999743 468999999975
No 255
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.25 E-value=0.0056 Score=49.08 Aligned_cols=50 Identities=6% Similarity=-0.043 Sum_probs=39.4
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC--CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL--NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~--~p~Gvv~V~f~~ 477 (487)
...++|+|.||- .++ .++||++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 6 ~~~~~l~V~nlp--~~~---------t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~ 57 (92)
T 2dgv_A 6 SGACQIFVRNLP--FDF---------TWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFES 57 (92)
T ss_dssp SSCCEEEECSCC--TTC---------CHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESS
T ss_pred CCCcEEEEeCCC--CCC---------CHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECC
Confidence 346799999993 222 35789999999999999999753 357999999875
No 256
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.25 E-value=0.0035 Score=54.01 Aligned_cols=48 Identities=8% Similarity=0.116 Sum_probs=38.1
Q ss_pred CCCeEEEeeccCChhh-hccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAE-MRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~e-l~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
.++++|+|+||-. + . .++||++.|++||.|.+|.|.. ..|+++|.|..
T Consensus 23 ~p~~~l~V~NLp~--~~~---------te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~ 71 (112)
T 1x4f_A 23 ELGRVIHLSNLPH--SGY---------SDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMET 71 (112)
T ss_dssp CCCCEEEEESCCC--SSC---------CSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSS
T ss_pred CCCCEEEEeCCCC--ccC---------CHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECC
Confidence 3568999999932 1 1 2468999999999999999963 47999999864
No 257
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.24 E-value=0.0035 Score=51.34 Aligned_cols=49 Identities=8% Similarity=0.047 Sum_probs=38.6
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC---CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL---NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~---~p~Gvv~V~f~~ 477 (487)
..++|+|.||- .++ .++||++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 16 ~~~~l~v~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 67 (100)
T 2do4_A 16 EKHKLFISGLP--FSC---------TKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYEN 67 (100)
T ss_dssp CCSCEEEESCC--TTC---------CHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECC
Confidence 45789999992 222 35789999999999999999753 346999999876
No 258
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=96.24 E-value=0.005 Score=48.78 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=38.2
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
..++|++.||- .++ .++||++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 5 ~~~~l~v~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 57 (87)
T 3bs9_A 5 SHFHVFVGDLS--PEI---------TTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN 57 (87)
T ss_dssp -CEEEEEESCC--TTC---------CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CceEEEEeCCC--CCC---------CHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECC
Confidence 35799999992 222 35789999999999999999754 257999999875
No 259
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.20 E-value=0.0049 Score=50.68 Aligned_cols=50 Identities=10% Similarity=-0.116 Sum_probs=39.0
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhcc-CcceEEEEEecC---CCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVK-IGPVDSVKVMKL---NVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~K-fG~V~~V~V~~~---~p~Gvv~V~f~~~ 478 (487)
..++|+|.||- .++ .+++|++.|++ ||.|.+|.|+.. ...|+++|.|...
T Consensus 8 ~~~~l~V~nLp--~~~---------t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~ 61 (104)
T 2dhg_A 8 PEYSLFVGDLT--PDV---------DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDE 61 (104)
T ss_dssp CCCCEEEECCC--TTC---------CHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCH
T ss_pred CCcEEEEeCCC--CCC---------CHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCH
Confidence 45789999992 222 35789999999 999999999753 3578999999763
No 260
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.20 E-value=0.0057 Score=50.90 Aligned_cols=49 Identities=6% Similarity=0.050 Sum_probs=39.1
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec-CCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK-LNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~-~~p~Gvv~V~f~~ 477 (487)
..++|+|.||- .++ .++||++.|++||.|.+|.|.. ..+.|+++|.|..
T Consensus 21 ~~~~l~V~nLp--~~~---------t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~ 70 (109)
T 1x4a_A 21 NDCRIYVGNLP--PDI---------RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFED 70 (109)
T ss_dssp CSSEEEEESCC--TTC---------CHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESC
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECC
Confidence 45799999992 222 3578999999999999999964 3468999999975
No 261
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.19 E-value=0.0077 Score=50.67 Aligned_cols=50 Identities=8% Similarity=0.012 Sum_probs=39.6
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
...++|+|.||- .++ .++||++.|++||.|.+|.|... ...|+++|.|..
T Consensus 15 ~~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 68 (116)
T 2cqd_A 15 TTFTKIFVGGLP--YHT---------TDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 68 (116)
T ss_dssp CSSSEEEEECCC--SSC---------CHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESS
T ss_pred CCCCEEEEeCCC--CCC---------CHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECC
Confidence 346799999992 221 35789999999999999999753 367999999875
No 262
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.18 E-value=0.0067 Score=50.87 Aligned_cols=49 Identities=12% Similarity=0.225 Sum_probs=39.2
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec-CCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK-LNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~-~~p~Gvv~V~f~~ 477 (487)
.+++|+|.|+ |..+ ..+||++.|++||.|.+|.|.. ....|+++|.|..
T Consensus 7 ~~~~l~V~nl--p~~~---------t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~ 56 (115)
T 3lqv_A 7 VNRILYIRNL--PYKI---------TAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 56 (115)
T ss_dssp CCSEEEEESC--CTTC---------CHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESS
T ss_pred CCCEEEEeCC--CCCC---------CHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECC
Confidence 4579999998 2222 3578999999999999999863 4568999999876
No 263
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.16 E-value=0.009 Score=49.32 Aligned_cols=54 Identities=7% Similarity=-0.136 Sum_probs=41.4
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
+++|++.||-.. +++-+.-.+++|++.|++||.|.+|.|+.. .+.|+++|.|..
T Consensus 6 ~~~vfV~nLp~v-----~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~ 63 (100)
T 3ns6_A 6 DQYIVVNGAPVI-----PSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGS 63 (100)
T ss_dssp GGEEEEESCCCC-----BGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESS
T ss_pred CcEEEEeCCCcC-----ChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECC
Confidence 579999999331 112234578999999999999999999633 357999999976
No 264
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.15 E-value=0.0056 Score=50.32 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=39.9
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEee
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~~ 478 (487)
...++|+|.||- .++ .+++|++.|++||.|.+|.|... .+.|+++|.|...
T Consensus 13 ~~~~~l~V~nlp--~~~---------t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (103)
T 2cq0_A 13 DDNATIRVTNLS--EDT---------RETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 67 (103)
T ss_dssp SSSEEEEEESCC--TTC---------CHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSH
T ss_pred CCCCEEEEeCCC--CCC---------CHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCH
Confidence 346899999992 222 35789999999999999999743 3578999999763
No 265
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.13 E-value=0.0037 Score=50.88 Aligned_cols=49 Identities=10% Similarity=-0.001 Sum_probs=38.2
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC-------CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL-------NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~-------~p~Gvv~V~f~~ 477 (487)
..++|+|.||- .++ .+++|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 4 ~~~~l~V~nLp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~ 59 (98)
T 2cpf_A 4 GSSGLFIKNLN--FST---------TEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKK 59 (98)
T ss_dssp CCCCEEEESCC--TTC---------CHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESS
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECC
Confidence 35789999992 222 35789999999999999999742 346899999975
No 266
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.12 E-value=0.0067 Score=50.03 Aligned_cols=50 Identities=10% Similarity=0.119 Sum_probs=39.3
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC-----CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL-----NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~-----~p~Gvv~V~f~~ 477 (487)
...++|+|.||- ..+ .+++|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 13 ~~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~ 67 (107)
T 2cph_A 13 QTTSKILVRNIP--FQA---------NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFIT 67 (107)
T ss_dssp SCCCCEEEESCC--TTC---------CHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESS
T ss_pred CCCCEEEEeCCC--CcC---------CHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECC
Confidence 346789999992 222 35789999999999999999654 358999999865
No 267
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.11 E-value=0.0059 Score=50.22 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=39.5
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC--CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL--NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~--~p~Gvv~V~f~~ 477 (487)
..++|+|.||- ..+ .+++|++.|++||.|.+|.|... ...|+++|.|..
T Consensus 14 ~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~ 64 (103)
T 2d9p_A 14 QVVNLYVKNLD--DGI---------DDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSS 64 (103)
T ss_dssp SCCCEEEECCC--TTC---------CHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESS
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECC
Confidence 46799999992 222 35789999999999999999854 567999999975
No 268
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.10 E-value=0.0069 Score=49.32 Aligned_cols=47 Identities=9% Similarity=-0.002 Sum_probs=37.9
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
++++|+|.||-. ++ .++||++.|++||.|.+|.|... .|+++|.|..
T Consensus 16 ~~~~l~V~nlp~--~~---------t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~ 62 (97)
T 1why_A 16 PTTRLWVGGLGP--NT---------SLAALAREFDRFGSIRTIDHVKG--DSFAYIQYES 62 (97)
T ss_dssp CCSCEEEECCCS--SC---------CHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESS
T ss_pred CCCEEEEeCCCC--CC---------CHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECC
Confidence 457899999932 22 35789999999999999999654 8999999975
No 269
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.10 E-value=0.012 Score=47.17 Aligned_cols=46 Identities=11% Similarity=0.045 Sum_probs=37.5
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
...++|++.||- .++ .+++|++.|++||.|.+|.|. .|+++|.|..
T Consensus 6 ~~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~ 51 (90)
T 2dnq_A 6 SGMVKLFIGNLP--REA---------TEQEIRSLFEQYGKVLECDII----KNYGFVHIED 51 (90)
T ss_dssp SCCEEEEEESCC--SSC---------CHHHHHHHHHTSSCEEEEEEE----TTEEEEEESS
T ss_pred CCCeEEEEeCCC--CCC---------CHHHHHHHHHhCCCEEEEEEE----CCEEEEEECC
Confidence 346899999992 222 357899999999999999997 6899999875
No 270
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=96.10 E-value=0.0045 Score=52.46 Aligned_cols=48 Identities=8% Similarity=0.058 Sum_probs=37.8
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCC--CCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLN--VEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~--p~Gvv~V~f~~ 477 (487)
+.+|+++|| |.++ -++||++.|++||.|.+|.|+... ..|++||.|..
T Consensus 5 ~~~lfV~nL--p~~~---------te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~ 54 (115)
T 4f25_A 5 SGNIFIKNL--DKSI---------DNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFET 54 (115)
T ss_dssp CCEEEEESC--CTTC---------CHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESC
T ss_pred CCEEEECCC--CCCC---------CHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECC
Confidence 458999999 2222 257899999999999999987433 46999999876
No 271
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.08 E-value=0.0072 Score=51.54 Aligned_cols=50 Identities=8% Similarity=0.063 Sum_probs=39.3
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
...++|+|.||- .++ .+++|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 20 ~~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 73 (126)
T 3ex7_B 20 VEGWILFVTGVH--EEA---------TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYET 73 (126)
T ss_dssp SSSEEEEEESCC--TTC---------CHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESS
T ss_pred CCCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECC
Confidence 346799999992 221 35789999999999999999633 358999999876
No 272
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.08 E-value=0.011 Score=48.64 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=38.8
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
..++|+|.|+-. ++ .+++|++.|++||.|.+|.|... .+.|+|+|.|..
T Consensus 22 ~~~~l~V~nlp~--~~---------t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 74 (106)
T 1p27_B 22 EGWILFVTGVHE--EA---------TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYET 74 (106)
T ss_dssp TBEEEEEECCCT--TC---------CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESC
T ss_pred CCCEEEEeCCCC--CC---------CHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 467999999932 22 35789999999999999999743 347999999876
No 273
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.07 E-value=0.011 Score=49.31 Aligned_cols=47 Identities=11% Similarity=-0.013 Sum_probs=38.0
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~~ 478 (487)
..++|+|.||- .++ .++||++.|++||.|.+|.|+.. |+++|.|...
T Consensus 14 ~~~~l~V~nLp--~~~---------t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~ 60 (108)
T 1x4c_A 14 SENRVVVSGLP--PSG---------SWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRK 60 (108)
T ss_dssp CCCEEEEESCC--SSC---------CHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSH
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCH
Confidence 45799999992 221 35789999999999999999755 9999999763
No 274
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.07 E-value=0.0066 Score=49.97 Aligned_cols=49 Identities=18% Similarity=0.065 Sum_probs=39.0
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
..++|+|.||- .++ .+++|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 14 ~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 66 (105)
T 1x5u_A 14 QDATVYVGGLD--EKV---------SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 66 (105)
T ss_dssp TTTEEEEECCC--TTC---------CHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESS
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECC
Confidence 46799999992 222 35789999999999999999753 357999999875
No 275
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.06 E-value=0.0069 Score=48.76 Aligned_cols=50 Identities=14% Similarity=0.023 Sum_probs=39.0
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
...++|+|.||-. ++ ..++|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 13 ~~~~~l~v~nlp~--~~---------t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 66 (95)
T 2cqc_A 13 DPNCCLGVFGLSL--YT---------TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 66 (95)
T ss_dssp CGGGCEEEESCCS--SC---------CHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESS
T ss_pred CCCCEEEEECCCC--CC---------CHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECC
Confidence 3467999999922 21 35789999999999999999743 457999999875
No 276
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.06 E-value=0.0064 Score=49.70 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=38.9
Q ss_pred CCCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 416 ~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
....++|+|.|+- .++ .+++|++.|++||.|.+|.|.. ..|+++|.|..
T Consensus 12 ~~~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~ 60 (99)
T 2cpj_A 12 FTQRSRLFVGNLP--PDI---------TEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLET 60 (99)
T ss_dssp CCCTTEEEEESCC--TTC---------CHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSS
T ss_pred CCCCCEEEEeCCC--CCC---------CHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECC
Confidence 3456799999992 222 3578999999999999999963 47999999875
No 277
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.06 E-value=0.01 Score=48.85 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=38.7
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCC---CCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLN---VEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~---p~Gvv~V~f~~ 477 (487)
.+++|+|.|| |.++ .+++|++.|++||.|.+|.|.... +.|+++|.|..
T Consensus 14 ~~~~l~v~nL--p~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 65 (105)
T 2dnh_A 14 RDRKLFVGML--NKQQ---------SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSS 65 (105)
T ss_dssp CCCEEEEESC--CTTC---------CHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESS
T ss_pred CCCEEEEeCC--CCCC---------CHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCC
Confidence 4689999999 2222 357899999999999999997542 36899999875
No 278
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.03 E-value=0.0026 Score=49.21 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=36.2
Q ss_pred EEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEee
Q 011382 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 421 ~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~~ 478 (487)
+|++.|+ |.+. .++||++.|++||.|.+|.|... .+.|+++|.|...
T Consensus 2 ~l~v~nl--p~~~---------t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 52 (77)
T 1uaw_A 2 KMFIGGL--SWQT---------TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 52 (77)
T ss_dssp CEEEESC--CSSC---------CSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCT
T ss_pred EEEEeCC--CCCC---------CHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCH
Confidence 5888998 2222 24679999999999999999753 3579999998763
No 279
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=96.03 E-value=0.0087 Score=47.55 Aligned_cols=49 Identities=6% Similarity=-0.006 Sum_probs=38.5
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEee
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~~ 478 (487)
.++|++.|+ |.+. .+++|++.|++||.|.+|.|... .+.|+++|.|...
T Consensus 6 ~~~l~V~nl--p~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 58 (89)
T 3ucg_A 6 ARSIYVGNV--DYGA---------TAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK 58 (89)
T ss_dssp HTEEEEESC--CTTC---------CHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESST
T ss_pred CCEEEEeCC--CCCC---------CHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 368999999 2222 35789999999999999999743 4589999999763
No 280
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.03 E-value=0.0075 Score=50.59 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=38.6
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec----CCCCceEEEEEEee
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK----LNVEINCILIIFLL 478 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~----~~p~Gvv~V~f~~~ 478 (487)
.++|+|.||- .++ .++||++.|++||.|.+|.|.. ..+.|+++|.|...
T Consensus 25 ~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 77 (114)
T 2cq4_A 25 ARTVFCMQLA--ARI---------RPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEI 77 (114)
T ss_dssp HTEEEEESCC--TTC---------CHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCG
T ss_pred CCEEEEeCCC--CCC---------CHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcH
Confidence 4689999992 222 3578999999999999999974 34679999999753
No 281
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=96.03 E-value=0.0042 Score=51.74 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=37.3
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEee
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFLL 478 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~~ 478 (487)
+.-|+++|+-- +. .+++|++.|.+||+|.+++|.. +.|+++|.|...
T Consensus 7 ~~wL~VgNL~~--~~---------te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~ 53 (89)
T 2wbr_A 7 SSWLLLKNLTA--QI---------DGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTR 53 (89)
T ss_dssp CCEEEEECCCT--TC---------CCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSH
T ss_pred cceEEEeCCCc--cC---------CHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCH
Confidence 34688999921 11 2478999999999999999964 799999998764
No 282
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.02 E-value=0.013 Score=47.80 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=39.1
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC-CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL-NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~-~p~Gvv~V~f~~ 477 (487)
...++|++.|+- .++. ..+|+..|++.|++||.|.+|.|... ...|+++|.|..
T Consensus 7 ~~~~~l~V~nL~--~~~~-----~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~ 61 (96)
T 2dgx_A 7 GNGADVQVSNID--YRLS-----RKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMEN 61 (96)
T ss_dssp SSCEEEEEESCC--TTSC-----HHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESS
T ss_pred CCCCEEEEECCC--CCCC-----HHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECC
Confidence 345789999993 2221 13455566699999999999999732 238999999976
No 283
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=96.01 E-value=0.0057 Score=49.54 Aligned_cols=53 Identities=11% Similarity=0.202 Sum_probs=39.7
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC-CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL-NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~-~p~Gvv~V~f~~ 477 (487)
++++|+|.|+- .++. ..+|++.|.+.|++||.|.+|.|... ...|+++|.|..
T Consensus 7 ~~~~l~V~nLp--~~~~-----~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~ 60 (97)
T 1nu4_A 7 PNHTIYINNLN--EKIK-----KDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKE 60 (97)
T ss_dssp CCSEEEEESCC--TTSC-----HHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESS
T ss_pred CCCEEEEeCCC--CCCC-----HHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCC
Confidence 46799999983 2221 13466667799999999999999632 457999999975
No 284
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.99 E-value=0.006 Score=51.52 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=37.9
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
..++|+++|+- .+. .++||++.|++||.|.+|.|.. ..|+++|.|..
T Consensus 9 ~~~~l~V~nLp--~~~---------te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~ 55 (111)
T 1whx_A 9 SKTVILAKNLP--AGT---------LAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLE 55 (111)
T ss_dssp EEEEEEEESCC--TTC---------CHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESC
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCC
Confidence 35799999993 221 4678999999999999999863 67999999875
No 285
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.99 E-value=0.0098 Score=48.86 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=38.9
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC--CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL--NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~--~p~Gvv~V~f~~ 477 (487)
..++|+|.||- .++ .+++|++.|++||.|.+|.|... ...|+++|.|..
T Consensus 14 ~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~ 64 (103)
T 2cqi_A 14 QPRTLYVGNLS--RDV---------TEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYE 64 (103)
T ss_dssp CCCEEEEESCC--TTC---------CHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESS
T ss_pred CCCEEEEeCCC--ccC---------CHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECC
Confidence 46799999992 222 35789999999999999999753 246999999975
No 286
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.98 E-value=0.011 Score=48.54 Aligned_cols=49 Identities=18% Similarity=0.030 Sum_probs=38.4
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
..++|+|.||- .++ .++||++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 14 ~~~~l~v~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (103)
T 2cqg_A 14 KTSDLIVLGLP--WKT---------TEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTE 66 (103)
T ss_dssp CCCCEEEESCC--SSC---------CHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESS
T ss_pred CCCEEEEEcCC--CcC---------CHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECC
Confidence 45789999982 222 35789999999999999999653 346899999975
No 287
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.97 E-value=0.0063 Score=51.31 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=35.5
Q ss_pred CeE-EEeeccCChhhhccchhhHHHHHHHHHHHhccC-cceEEEEEecCCCCceEEEEEEe
Q 011382 419 PAT-VILRFMFTPAEMRADENLRSELEADVQEECVKI-GPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 419 ~~~-VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~Kf-G~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
..+ |++.|+ |... ++ ++|+.+|++.|++| |.|.+|. .|++||.|..
T Consensus 8 ~~T~lYV~NL--~~~~--~~---~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~ 55 (96)
T 2diu_A 8 CHTLLYVYNL--PANK--DG---KSVSNRLRRLSDNCGGKVLSIT------GCSAILRFIN 55 (96)
T ss_dssp SSEEEEEESC--CTTS--CH---HHHHHHHHHHHHTTTCCEEECC------TTCEEEEESS
T ss_pred cceEEEEeCC--CCcC--CH---HHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECC
Confidence 445 889999 2222 12 56899999999999 5999993 2999999976
No 288
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=95.96 E-value=0.0069 Score=52.73 Aligned_cols=50 Identities=14% Similarity=0.045 Sum_probs=39.6
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
.+.++|+|.|+ |.++ .++||++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 44 ~~~~~l~V~nL--p~~~---------te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~ 97 (129)
T 2kxn_B 44 DPNCCLGVFGL--SLYT---------TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 97 (129)
T ss_dssp CCSSCBCEETC--TTSC---------CHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESC
T ss_pred CCCCEEEEeCC--CCCC---------CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECC
Confidence 34678999999 2222 35789999999999999999743 568999999976
No 289
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.96 E-value=0.018 Score=46.91 Aligned_cols=45 Identities=4% Similarity=-0.138 Sum_probs=36.9
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
..++|++.|+ +. .++||++.|++||.|.+|.|. ...|+++|.|..
T Consensus 14 ~~~~l~V~n~-~~------------t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~ 58 (97)
T 1x5p_A 14 KGNTLYVYGE-DM------------TPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEK 58 (97)
T ss_dssp CCSEEEEECS-SC------------CHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESS
T ss_pred CCCEEEEcCC-CC------------CHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECC
Confidence 4578999994 21 247899999999999999994 578999999865
No 290
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=95.93 E-value=0.0074 Score=48.67 Aligned_cols=49 Identities=16% Similarity=0.111 Sum_probs=38.6
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC---CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL---NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~---~p~Gvv~V~f~~ 477 (487)
..++|+|.||-. .+ .++||++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 15 ~~~~l~v~nlp~--~~---------~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 66 (95)
T 2ywk_A 15 ADRTVFVGNLEA--RV---------REEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKH 66 (95)
T ss_dssp GGGEEEEECCCT--TC---------CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred CCCEEEEECCCC--CC---------CHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECC
Confidence 457999999922 21 35789999999999999999753 346899999965
No 291
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=95.91 E-value=0.01 Score=49.01 Aligned_cols=50 Identities=12% Similarity=0.019 Sum_probs=39.2
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC---CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL---NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~---~p~Gvv~V~f~~ 477 (487)
...++|+|.||- .++ .++||++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 27 ~~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 79 (107)
T 3ulh_A 27 ETGGKLLVSNLD--FGV---------SDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFER 79 (107)
T ss_dssp CCSEEEEEESCC--TTC---------CHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred CCCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECC
Confidence 356899999992 222 35789999999999999999744 457899999865
No 292
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.89 E-value=0.013 Score=46.08 Aligned_cols=48 Identities=10% Similarity=0.162 Sum_probs=38.6
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~~ 478 (487)
..++|++.|+-. .+ .+++|++.|++||.|.+|.|.. ..|+++|.|...
T Consensus 11 ~~~~l~V~~l~~--~~---------t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~ 58 (85)
T 2ytc_A 11 TITTLYVGGLGD--TI---------TETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATR 58 (85)
T ss_dssp SCCCEEEECCTT--TS---------CHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSH
T ss_pred CccEEEEcCCCC--CC---------CHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCH
Confidence 457899999932 22 3578999999999999999975 479999998763
No 293
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=95.87 E-value=0.014 Score=48.88 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=39.3
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
...++|+|.||- .++ .++||++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 13 ~~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 66 (115)
T 2dgo_A 13 SNHFHVFVGDLS--PEI---------TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN 66 (115)
T ss_dssp TTCEEEEEESCC--TTC---------CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCCcEEEEeCCC--CCC---------CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECC
Confidence 346899999992 222 35789999999999999999743 347999999975
No 294
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.87 E-value=0.0069 Score=49.61 Aligned_cols=50 Identities=12% Similarity=0.025 Sum_probs=39.4
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
...++|+|.||- .++ .+++|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 10 ~~~~~l~v~nLp--~~~---------t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 63 (102)
T 1x5s_A 10 SDEGKLFVGGLS--FDT---------NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN 63 (102)
T ss_dssp CCCSEEEEESCC--TTC---------CHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSS
T ss_pred CCCCEEEEECCC--CCC---------CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECC
Confidence 346799999992 222 35789999999999999999753 367999999875
No 295
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.86 E-value=0.007 Score=50.67 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=39.4
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC---CCCceEEEEEEeec
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL---NVEINCILIIFLLE 479 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~---~p~Gvv~V~f~~~~ 479 (487)
..++|+|.||-. ++ .+++|++.|++||.|.+|.|... ...|+++|.|...+
T Consensus 24 ~~~~l~V~nlp~--~~---------t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~ 77 (114)
T 1x5o_A 24 DPTNLYISNLPL--SM---------DEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTE 77 (114)
T ss_dssp CTTEEEEESCCT--TC---------CHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHH
T ss_pred CCCEEEEeCCCC--CC---------CHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHH
Confidence 357899999932 21 35789999999999999999754 34689999997643
No 296
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.82 E-value=0.017 Score=49.36 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=58.3
Q ss_pred CCcEEEEcCCCCCC-CH----HHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCc
Q 011382 287 VNTHVYVTGLPDDV-TV----EEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (487)
Q Consensus 287 ~nt~VyV~nLP~di-Te----eeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~ 361 (487)
..++|+|+||+.++ +. ..++++|..|+.+. .....+. =.-..|.|.++++|..|-..|+++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~--------tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~ 69 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDT--------TFQYFKS------FKRVRINFSNPLSAADARLRLHKT 69 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSC--------EEEEETT------TTEEEEECSSTTHHHHHHHTSTTS
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCc--------ceeecCc------ceEEEEEeCChHHHHHHHHHhccc
Confidence 45789999999865 32 46789999999998 7665543 124589999999999999999999
Q ss_pred ccCCCCceeEEEEecc
Q 011382 362 PFRPDGKIPMSVTQAK 377 (487)
Q Consensus 362 ~~~~G~~i~I~V~~A~ 377 (487)
.|. |. .|+|-.+.
T Consensus 70 ~f~-g~--~~r~YFgq 82 (104)
T 1wey_A 70 EFL-GK--EMKLYFAQ 82 (104)
T ss_dssp EET-TE--ECEEECCC
T ss_pred eec-Cc--eeEEEecC
Confidence 998 75 46766655
No 297
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.81 E-value=0.0072 Score=49.20 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=39.6
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceE-EEEEecC----CCCceEEEEEEee
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVD-SVKVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~-~V~V~~~----~p~Gvv~V~f~~~ 478 (487)
..+++|+|.||- .++ .+++|++.|++||.|. +|.|... .+.|+++|.|...
T Consensus 7 ~~~~~l~V~nLp--~~~---------t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~ 62 (99)
T 2div_A 7 GMAASLWMGDLE--PYM---------DENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADL 62 (99)
T ss_dssp SSSSEEEECSCC--TTC---------CHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCH
T ss_pred CCccEEEEeCCC--CCC---------CHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCH
Confidence 356899999992 222 3578999999999999 9998744 3569999998763
No 298
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.81 E-value=0.019 Score=47.56 Aligned_cols=50 Identities=8% Similarity=-0.112 Sum_probs=38.5
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEE-EEEec---CCCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDS-VKVMK---LNVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~-V~V~~---~~p~Gvv~V~f~~~ 478 (487)
..++|+++||-. +. .++||++.|++||.|.+ |.|.. ..+.|+++|.|...
T Consensus 14 ~~~~l~V~nLp~--~~---------te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~ 67 (104)
T 1wg5_A 14 NDGFVRLRGLPF--GC---------SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQ 67 (104)
T ss_dssp CCCEEEEESCCT--TC---------CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSH
T ss_pred CCCEEEEeCCCC--CC---------CHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCH
Confidence 457999999922 21 35789999999999998 77753 34679999999763
No 299
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.81 E-value=0.011 Score=49.18 Aligned_cols=47 Identities=9% Similarity=0.045 Sum_probs=38.1
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
..++|+|.||-. ++ .+++|++.|++||.|.+|.|... .|+++|.|..
T Consensus 24 ~~~~l~V~nl~~--~~---------t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~ 70 (109)
T 1x4g_A 24 KNCTVYCGGIAS--GL---------TDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFST 70 (109)
T ss_dssp SCCEEEEECCSS--CC---------CHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESS
T ss_pred CCcEEEEeCCCC--CC---------CHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECC
Confidence 357999999922 21 35789999999999999999754 8999999976
No 300
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=95.80 E-value=0.0077 Score=51.53 Aligned_cols=49 Identities=6% Similarity=-0.100 Sum_probs=40.2
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCc-ceEEEEEecCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIG-PVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG-~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
....|++.|+- .+. .++||++.|++|| .|..|.|+.+.+.|+++|.|..
T Consensus 27 ~~~~l~VgnLp--~~~---------te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~ 76 (111)
T 2jvr_A 27 KRYRITMKNLP--EGC---------SWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPS 76 (111)
T ss_dssp CCEEEEEECSS--CCC---------CHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESS
T ss_pred CCCEEEEECCC--CCC---------CHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECC
Confidence 35789999992 221 3578999999999 9999999867789999999975
No 301
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.79 E-value=0.0059 Score=50.40 Aligned_cols=50 Identities=8% Similarity=-0.112 Sum_probs=39.1
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~~ 478 (487)
..++|+|.||- .++ .++||++.|++||.|.+|.|... ...|++||.|...
T Consensus 15 ~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 68 (105)
T 2dh8_A 15 EIGKLFVGGLD--WST---------TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 68 (105)
T ss_dssp SSSEECCBSCC--TTC---------CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESST
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCH
Confidence 46799999992 221 35789999999999999999754 2468999999763
No 302
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=95.78 E-value=0.009 Score=50.17 Aligned_cols=49 Identities=10% Similarity=0.019 Sum_probs=37.9
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
..++|+|.|+- .++ .++||++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 24 ~~~~lfV~nLp--~~~---------te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~ 76 (109)
T 2rs2_A 24 SGCKMFIGGLS--WQT---------TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 76 (109)
T ss_dssp --CCEEEESCC--TTC---------CHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESS
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECC
Confidence 35789999992 222 35789999999999999999743 357999999975
No 303
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=95.77 E-value=0.011 Score=50.47 Aligned_cols=50 Identities=14% Similarity=0.020 Sum_probs=39.6
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC---CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL---NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~---~p~Gvv~V~f~~ 477 (487)
..+++|+|.|+- .++ .+++|++.|++||.|.+|.|... ...|+++|.|..
T Consensus 33 ~~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~ 85 (124)
T 2kt5_A 33 ETGAKLLVSNLD--FGV---------SDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFER 85 (124)
T ss_dssp SSCEEEEEESCC--SSC---------CHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESS
T ss_pred CCCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECC
Confidence 346799999992 221 35789999999999999999753 367999999875
No 304
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=95.77 E-value=0.0095 Score=50.01 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=39.3
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
..+++|+|.|+-. .+ .+++|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 24 ~~~~~l~V~nLp~--~~---------te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~ 77 (108)
T 2jrs_A 24 AGPMRLYVGSLHF--NI---------TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 77 (108)
T ss_dssp SSCEEEEEECCCS--SC---------CHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESC
T ss_pred CCCCEEEEeCCCC--CC---------CHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECC
Confidence 4568999999922 21 35789999999999999999743 347999999875
No 305
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=95.76 E-value=0.019 Score=47.69 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=39.2
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
...++|+|.||-. .+ ..++|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 24 ~~~~~l~V~nlp~--~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 77 (110)
T 1oo0_B 24 VEGWILFVTSIHE--EA---------QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYET 77 (110)
T ss_dssp TTBEEEEEESCCT--TC---------CHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESS
T ss_pred CCCCEEEEeCCCC--CC---------CHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECC
Confidence 3467999999932 22 35789999999999999999643 347999999976
No 306
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.75 E-value=0.013 Score=48.93 Aligned_cols=49 Identities=10% Similarity=-0.035 Sum_probs=38.5
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCC---CCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLN---VEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~---p~Gvv~V~f~~ 477 (487)
..++|+|.||- .++ .++||++.|++||.|.+|.|.... ..|+++|.|..
T Consensus 14 ~~~~l~V~nlp--~~~---------~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~ 65 (114)
T 2do0_A 14 LGSTVFVANLD--YKV---------GWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQ 65 (114)
T ss_dssp CCSCEEEESCC--TTC---------CHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESS
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECC
Confidence 45789999992 222 357899999999999999997532 36899999876
No 307
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=95.74 E-value=0.014 Score=45.61 Aligned_cols=47 Identities=6% Similarity=-0.088 Sum_probs=37.0
Q ss_pred eEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 420 ~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
.+|++.|+ |.+. ..+||++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 2 ~~l~V~nl--p~~~---------t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 52 (83)
T 3md1_A 2 FNLFVGDL--NVNV---------DDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTS 52 (83)
T ss_dssp EEEEEECC--CTTC---------CHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESC
T ss_pred eEEEEeCC--CCCC---------CHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECC
Confidence 57999999 2222 35789999999999999999743 347999999876
No 308
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.73 E-value=0.038 Score=48.30 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=56.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcccCCCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~G~ 367 (487)
.+.|.|-|.|... -..+...|++||.|. +... . . ...+-+|.|.++.+|.+||. .||..|. |.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv--------~~~~--~-~---~~NWihI~Y~s~~~A~rAL~-kNG~ii~-g~ 86 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNIL--------KHVM--S-N---TGNWMHIRYQSKLQARKALS-KDGRIFG-ES 86 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEE--------EEEE--C-S---SSSEEEEEESSHHHHHHHHT-TTTCEET-TT
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEE--------Eecc--C-C---CCCeEEEEeCCHHHHHHHHH-hCCeEec-CC
Confidence 5689999999985 677888999999999 5443 1 1 13588999999999999996 7999996 43
Q ss_pred ceeEEEEec
Q 011382 368 KIPMSVTQA 376 (487)
Q Consensus 368 ~i~I~V~~A 376 (487)
+.|-|.+.
T Consensus 87 -~mIGV~p~ 94 (119)
T 1wwh_A 87 -IMIGVKPC 94 (119)
T ss_dssp -EECEEEEC
T ss_pred -EEEEEEEC
Confidence 55677764
No 309
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=95.71 E-value=0.011 Score=48.50 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=38.5
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCC---CCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLN---VEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~---p~Gvv~V~f~~ 477 (487)
.+++|++.|+- .++ .+++|++.|++||.|.+|.|.... ..|+++|.|..
T Consensus 8 ~~~~l~V~nLp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 59 (102)
T 2xs2_A 8 MPNTVFVGGID--VRM---------DETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYN 59 (102)
T ss_dssp EEEEEEEECCC--TTC---------CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECC
Confidence 35799999992 222 357899999999999999997543 46999999965
No 310
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=95.70 E-value=0.0061 Score=49.92 Aligned_cols=45 Identities=9% Similarity=-0.001 Sum_probs=37.0
Q ss_pred EEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 421 ~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
+|++.||- .++ .+++|++.|++||.|.+|.|... +.|+++|.|..
T Consensus 2 ~l~V~nLp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~ 46 (101)
T 2hvz_A 2 KVYVGNLG--TGA---------GKGELERAFSYYGPLRTVWIARN-PPGFAFVEFED 46 (101)
T ss_dssp EEEEECCC--SSC---------SHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSS
T ss_pred EEEEeCCC--CCC---------CHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECC
Confidence 68899982 221 35789999999999999999766 89999999865
No 311
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=95.69 E-value=0.01 Score=50.52 Aligned_cols=48 Identities=17% Similarity=0.130 Sum_probs=38.4
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC---CCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL---NVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~---~p~Gvv~V~f~~ 477 (487)
+++|+|.||- .++ .++||++.|++||.|.+|.|... ...|+++|.|..
T Consensus 7 ~~~l~V~nLp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~ 57 (116)
T 2fy1_A 7 PGKLFIGGLN--RET---------NEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFEN 57 (116)
T ss_dssp CCEEEEECCT--TTC---------CHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSS
T ss_pred CCEEEEeCCC--CCC---------CHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECC
Confidence 5799999992 221 35789999999999999999754 357999999865
No 312
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.67 E-value=0.0078 Score=48.71 Aligned_cols=50 Identities=12% Similarity=-0.041 Sum_probs=38.9
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEE-EEecCCCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSV-KVMKLNVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V-~V~~~~p~Gvv~V~f~~~ 478 (487)
.+++|++.||- .++ ..++|++.|++||.|.+| .|......|.++|.|...
T Consensus 14 ~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~ 64 (96)
T 2e44_A 14 RIRKLQIRNIP--PHL---------QWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSK 64 (96)
T ss_dssp SCCCEEEEEEC--SSS---------CHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSH
T ss_pred CCCEEEEEcCC--CCC---------CHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCH
Confidence 35789999992 222 357899999999999999 476666678899998763
No 313
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=95.67 E-value=0.0072 Score=50.79 Aligned_cols=49 Identities=16% Similarity=0.034 Sum_probs=38.0
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
..++|+|.||- .++ .++||++.|++||.|.+|.|... ...|+++|.|..
T Consensus 24 ~~~~l~V~nLp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 76 (115)
T 2cpz_A 24 EGANLFIYHLP--QEF---------GDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN 76 (115)
T ss_dssp TTCCEEEESCC--SSC---------CHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSS
T ss_pred CCcEEEEeCCC--CCC---------CHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECC
Confidence 45789999992 222 25789999999999999999743 245899999865
No 314
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=95.67 E-value=0.012 Score=49.54 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=37.2
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
.+++|+|.|| |.++ .++||++.|++||.|.+|.|. .|+++|.|..
T Consensus 30 ~~~~l~V~nL--p~~~---------t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~ 74 (108)
T 2jvo_A 30 SNTRLFVRPF--PLDV---------QESELNEIFGPFGPMKEVKIL----NGFAFVEFEE 74 (108)
T ss_dssp SCSEEEECSS--CTTC---------CHHHHHHHHTTTSCCCEEEEE----TTEEEEECSS
T ss_pred CCCEEEEECC--CCCC---------CHHHHHHHHHhcCCEEEEEEE----CCEEEEEECC
Confidence 4679999999 2222 357899999999999999997 8999999865
No 315
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.66 E-value=0.012 Score=49.35 Aligned_cols=50 Identities=8% Similarity=0.024 Sum_probs=39.5
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC--CCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL--NVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~--~p~Gvv~V~f~~~ 478 (487)
..++|++.||- .++ .+++|++.|++||.|.+|.|... .+.|+++|.|...
T Consensus 28 ~~~~l~V~nLp--~~~---------te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~ 79 (109)
T 2err_A 28 QPKRLHVSNIP--FRF---------RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS 79 (109)
T ss_dssp CCCEEEEESCC--TTC---------CHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCS
T ss_pred CCCEEEEECCC--CcC---------CHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCH
Confidence 46799999992 222 35789999999999999999643 3589999998763
No 316
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.66 E-value=0.025 Score=49.49 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=34.1
Q ss_pred EEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCce-EEEEEEe
Q 011382 422 VILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEIN-CILIIFL 477 (487)
Q Consensus 422 VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gv-v~V~f~~ 477 (487)
|++.||...- .+++|++.|++||.|.+|+|+++ .|+ ++|.|..
T Consensus 28 l~V~NL~~~v-----------t~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~ 71 (124)
T 2e5i_A 28 LSIQNPLYPI-----------TVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFES 71 (124)
T ss_dssp EEEESCCSCC-----------CHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESS
T ss_pred EEEcCcCCCC-----------CHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECC
Confidence 5679984321 24689999999999999999876 396 9999965
No 317
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=95.65 E-value=0.015 Score=47.83 Aligned_cols=47 Identities=4% Similarity=0.023 Sum_probs=37.3
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
+.+++|+|.|+-. .++ .+++|++.|++||.|.+|.| +.|+++|.|..
T Consensus 20 ~~~~~l~V~nLp~-~~~---------t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~ 66 (97)
T 2xnq_A 20 HMKSRLFIGNLPL-KNV---------SKEDLFRIFSPYGHIMQINI----KNAFGFIQFDN 66 (97)
T ss_dssp CTTCEEEEESCCS-SCC---------CHHHHHHHHGGGSCEEEEEE----CSSEEEEEESS
T ss_pred CCCCEEEEeCCCc-ccC---------CHHHHHHHHHhcCCEEEEEE----eCCEEEEEECC
Confidence 3568999999921 021 25789999999999999999 48999999965
No 318
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.011 Score=48.41 Aligned_cols=47 Identities=15% Similarity=-0.007 Sum_probs=38.1
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
..++|++.||-. ++ .+++|++.|++||.|.+|.|. ...|+++|.|..
T Consensus 26 ~~~~l~V~nlp~--~~---------~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~ 72 (101)
T 2la4_A 26 RVTTAYIGNIPH--FA---------TEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDT 72 (101)
T ss_dssp SCCEEEEESCCT--TC---------CHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSS
T ss_pred CCCEEEEcCCCc--cc---------CHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECC
Confidence 357999999932 22 357899999999999999997 568999999865
No 319
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.63 E-value=0.0093 Score=50.16 Aligned_cols=49 Identities=10% Similarity=0.035 Sum_probs=38.5
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEee
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~~ 478 (487)
.++|+|.|| |.++ .+++|++.|++||.|.+|.|... .+.|+++|.|...
T Consensus 27 ~~~l~V~nL--p~~~---------te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 79 (116)
T 1x4b_A 27 FRKLFIGGL--SFET---------TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 79 (116)
T ss_dssp HTEEEEECC--TTCC---------CHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSH
T ss_pred CCEEEEeCC--CCCC---------CHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCH
Confidence 468999999 2222 35789999999999999999753 3579999998763
No 320
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.62 E-value=0.018 Score=46.38 Aligned_cols=46 Identities=7% Similarity=0.102 Sum_probs=36.9
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
...++|+|.||- .++ .+++|++.|++||.|.+|.|. .|+++|.|..
T Consensus 8 ~~~~~l~V~nLp--~~~---------t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~ 53 (92)
T 2dgt_A 8 KASTKLHVGNIS--PTC---------TNQELRAKFEEYGPVIECDIV----KDYAFVHMER 53 (92)
T ss_dssp CSSEEEEEESCC--SSC---------CHHHHHHHHHTTSCCCEEEEC----SSEEEEEESC
T ss_pred CCCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCeEEEEEE----CCEEEEEECC
Confidence 456899999992 222 357899999999999999996 4599999875
No 321
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.62 E-value=0.012 Score=51.00 Aligned_cols=47 Identities=9% Similarity=0.001 Sum_probs=36.9
Q ss_pred CCeEEEeec--cCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 418 IPATVILRF--MFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkN--Mf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
++++|+++| + +.+. .+++|++.|++||.|.+|.|.. ..|+++|.|..
T Consensus 24 pt~~L~V~Ng~L--~~~~---------te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~ 72 (114)
T 2cq2_A 24 ATQSLVVANGGL--GNGV---------SRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRT 72 (114)
T ss_dssp CCSEEEEETCTG--GGTC---------CHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESS
T ss_pred CCCEEEEECCCC--CCCC---------CHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECC
Confidence 467899966 6 1111 3578999999999999999864 47999999976
No 322
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=95.61 E-value=0.012 Score=51.09 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=38.6
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
..++|+|.||- .++ .++||++.|++||.|.+|.|... ...|+|+|.|..
T Consensus 41 ~~~~l~V~nLp--~~~---------~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 93 (139)
T 1u6f_A 41 VLRNLMVNYIP--TTV---------DEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQS 93 (139)
T ss_dssp TTSEEEEESCS--TTC---------CHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESS
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECC
Confidence 45799999992 222 35789999999999999999743 247999999965
No 323
>1syx_B CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2, CD; GYF-domain, thioredoxin-like, spliceosomal proteins, transla immune system complex; 2.35A {Homo sapiens} SCOP: d.76.1.1 PDB: 1gyf_A 1l2z_A
Probab=95.61 E-value=0.0075 Score=49.85 Aligned_cols=51 Identities=12% Similarity=0.276 Sum_probs=45.4
Q ss_pred ccceEEE---cCCCcccCCCCHHHHHHHHHcCcccCCcceeccC-c-cCcccCCCc
Q 011382 23 EEGWYIL---DENQQHVGPYAISELCEHFLNGYLLETTLVWSQG-R-SEWQPLSSI 73 (487)
Q Consensus 23 ~~~Wyy~---~~ngq~~GP~s~~eL~~~~~~G~i~~~TlVW~eG-m-~~W~pl~~v 73 (487)
++-|.|- +.+++-+||||..+|+.....|+.+..-+|.+-| - ..|.++..|
T Consensus 25 ~~~WeYKW~~~~~~~i~GPfs~~eM~~W~~~GYF~~~v~vRrvg~~~~~Fy~~~rI 80 (86)
T 1syx_B 25 DVMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRI 80 (86)
T ss_dssp CCEEEEESSSSSSSCCEEEEEHHHHHHHHHTTSCTTCCEEEESSSTTCCCEEGGGC
T ss_pred cceEEEEecCCCCCcccCCcCHHHHHHHHHCCCcCCCeEEEEecCCCCceEEeeee
Confidence 5889998 5568899999999999999999999999999999 4 689988776
No 324
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.014 Score=47.59 Aligned_cols=47 Identities=4% Similarity=-0.008 Sum_probs=37.1
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
.++++|++.|+-. ..+ .++||++.|++||.|.+|.|. .|+++|.|..
T Consensus 8 ~~~~~l~V~nlp~-~~~---------t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~ 54 (96)
T 2kvi_A 8 PPKSRLFIGNLPL-KNV---------SKEDLFRIFSPYGHIMQINIK----NAFGFIQFDN 54 (96)
T ss_dssp -CCEEEEEESSTT-SCC---------CHHHHHHHHTTTCCCCEEEEE----TTEEEEEESC
T ss_pred CCCCEEEEeCCCc-ccC---------CHHHHHHHHHhcCCEEEEEEe----CCEEEEEECC
Confidence 3468999999921 022 357899999999999999994 7999999975
No 325
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.59 E-value=0.014 Score=48.37 Aligned_cols=49 Identities=12% Similarity=-0.033 Sum_probs=38.8
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcc-eEEEEEec-----CCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGP-VDSVKVMK-----LNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~-V~~V~V~~-----~~p~Gvv~V~f~~ 477 (487)
..++|+|.||- .++ .+++|++.|++||. |.+|.|+. ..+.|+++|.|..
T Consensus 7 ~~~~l~V~nLp--~~~---------t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~ 61 (109)
T 2dis_A 7 GNCRLFIGGIP--KMK---------KREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYES 61 (109)
T ss_dssp CSEEEEEECCC--TTS---------CHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESS
T ss_pred CCCEEEEeCCC--CcC---------CHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecC
Confidence 45799999993 222 35789999999999 99999972 1468999999975
No 326
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=95.56 E-value=0.011 Score=50.33 Aligned_cols=47 Identities=6% Similarity=0.022 Sum_probs=37.7
Q ss_pred eEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec----CCCCceEEEEEEe
Q 011382 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK----LNVEINCILIIFL 477 (487)
Q Consensus 420 ~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~----~~p~Gvv~V~f~~ 477 (487)
++|+|.||- .++ .++||++.|++||.|.+|.|.. ..+.|+++|.|..
T Consensus 37 ~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 87 (124)
T 2jwn_A 37 RSVYVGNVD--YGS---------TAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAE 87 (124)
T ss_dssp TEEEEEEEC--TTC---------CHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESS
T ss_pred CEEEEeCCC--CCC---------CHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECC
Confidence 589999992 221 3578999999999999999964 3468999999975
No 327
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=95.56 E-value=0.0086 Score=49.28 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=36.4
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC-----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL-----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~-----~p~Gvv~V~f~~ 477 (487)
..++|+|.||- .++ .++||++.|++|| |.+|.|... .+.|+++|.|..
T Consensus 18 ~~~~l~V~nLp--~~~---------t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~ 70 (100)
T 2j76_E 18 PPYTAFLGNLP--YDV---------TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFED 70 (100)
T ss_dssp --CEEEESCCS--SCC---------SSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECC
T ss_pred CCcEEEEeCCC--CCC---------CHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECC
Confidence 46799999992 222 2468899999999 999999643 358999999975
No 328
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.56 E-value=0.022 Score=46.87 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=38.3
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC-----CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL-----NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~-----~p~Gvv~V~f~~ 477 (487)
...++|+|.||- .++ .++||++.|++|| |.+|.|... ...|+++|.|..
T Consensus 13 ~~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~ 66 (104)
T 1wi8_A 13 SPPYTAFLGNLP--YDV---------TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFED 66 (104)
T ss_dssp SSCEEEEEESCC--SSC---------CHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESS
T ss_pred CCCCEEEEeCCC--CcC---------CHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECC
Confidence 356899999992 222 3578999999999 999999743 347999999975
No 329
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=95.55 E-value=0.0047 Score=51.26 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=37.0
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcc--eEEEEEec----CCCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGP--VDSVKVMK----LNVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~--V~~V~V~~----~~p~Gvv~V~f~~ 477 (487)
-.+|+|+|+-. +. .+++|++.|++||. |.+|+|.. ..+.|++||.|..
T Consensus 9 m~tlfV~nL~~--~~---------tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~ 62 (95)
T 2lkz_A 9 MDTIILRNIAP--HT---------VVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSS 62 (95)
T ss_dssp CCEEEEESCCT--TC---------CHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSS
T ss_pred cCEEEEeCCCC--cC---------CHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECC
Confidence 35899999921 11 46899999999995 67898864 3468999999975
No 330
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=95.54 E-value=0.015 Score=51.51 Aligned_cols=51 Identities=12% Similarity=0.028 Sum_probs=39.7
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEee
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~~ 478 (487)
...++|+|.||- .++ .++||++.|++||.|.+|.|... .+.|+|+|.|...
T Consensus 37 ~~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 91 (156)
T 1h2v_Z 37 KKSCTLYVGNLS--FYT---------TEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSR 91 (156)
T ss_dssp TTCCEEEEESCC--TTC---------CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCH
Confidence 346899999992 221 35789999999999999999643 3569999999763
No 331
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.53 E-value=0.014 Score=49.12 Aligned_cols=34 Identities=9% Similarity=-0.069 Sum_probs=30.7
Q ss_pred HHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 443 LEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 443 i~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
.++||++.|++||.|..|.|. +.+.|+++|.|..
T Consensus 30 te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~ 63 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFAT 63 (100)
T ss_dssp CHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESC
T ss_pred CHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECC
Confidence 478999999999999999997 5789999999975
No 332
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.50 E-value=0.0033 Score=51.68 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=37.6
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
.++|+|.|+- ..+ .+++|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 8 ~~~l~V~nlp--~~~---------~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 59 (104)
T 1p1t_A 8 LRSVFVGNIP--YEA---------TEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 59 (104)
T ss_dssp HSCEEEESCC--TTS---------CHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSC
T ss_pred ccEEEEeCCC--CcC---------CHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECC
Confidence 4689999993 221 35789999999999999999743 347999999865
No 333
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.48 E-value=0.029 Score=47.48 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=46.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 011382 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD 359 (487)
Q Consensus 290 ~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ld 359 (487)
+||+-++|...-..+|..+|+.||-|. |+.+-|- -|||.|.+++.|..|+.++.
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTTCSCC---------CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHhhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 455559999999999999999999776 7777662 69999999999999998764
No 334
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=95.48 E-value=0.0043 Score=47.85 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=35.6
Q ss_pred EEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec----CCCCceEEEEEEee
Q 011382 422 VILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK----LNVEINCILIIFLL 478 (487)
Q Consensus 422 VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~----~~p~Gvv~V~f~~~ 478 (487)
|++.|+- .+. .+++|++.|++||.|.+|.|.. ..+.|+++|.|...
T Consensus 2 l~v~nLp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 51 (75)
T 1iqt_A 2 IFVGGLS--PDT---------PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEE 51 (75)
T ss_dssp EEESCCC--SSC---------CHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSS
T ss_pred EEEeCCC--CCC---------CHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCH
Confidence 6788872 221 3578999999999999999964 34689999998764
No 335
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.47 E-value=0.011 Score=48.38 Aligned_cols=49 Identities=6% Similarity=0.028 Sum_probs=38.9
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
..++|+|.||- .++ .+++|++.|++||.|.+|.|+.. .+.|+++|.|..
T Consensus 11 ~~~~l~V~nLp--~~~---------t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 63 (102)
T 2cqb_A 11 TKRVLYVGGLA--EEV---------DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFEL 63 (102)
T ss_dssp CCSCEEEESCC--SSC---------CHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSS
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECC
Confidence 46799999992 222 25789999999999999999643 468999999865
No 336
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.45 E-value=0.033 Score=45.68 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=38.2
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
...++|+|.||- .++ .++||++.|++|| |.+|.|... .+.|+++|.|..
T Consensus 13 ~~~~~l~V~nLp--~~~---------t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~ 65 (103)
T 2dng_A 13 EPPYTAYVGNLP--FNT---------VQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDE 65 (103)
T ss_dssp SSCEEEEEESCC--TTC---------CHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESS
T ss_pred CCCeEEEEeCCC--CCC---------CHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECC
Confidence 356899999992 222 3578999999997 999999743 347999999975
No 337
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.45 E-value=0.012 Score=47.84 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=38.1
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
.+++|+|.||- .++ .++||++.|++||.|. +.|....+.|+++|.|..
T Consensus 18 ~~~~l~V~nL~--~~~---------t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~ 65 (97)
T 2e5j_A 18 LAADVYVGNLP--RDA---------RVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPD 65 (97)
T ss_dssp CCCEEEEECCC--TTC---------CHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSS
T ss_pred CCCEEEEeCCC--CcC---------cHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECC
Confidence 46799999992 222 3578999999999997 666667789999999865
No 338
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=95.44 E-value=0.011 Score=48.66 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=36.7
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
...++|+|.||- .++ .++||++.|++||.|.+|.|. .|+++|.|..
T Consensus 9 ~~~~~l~V~nl~--~~~---------t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~ 54 (103)
T 2dgu_A 9 AKVKVLFVRNLA--NTV---------TEEILEKAFSQFGKLERVKKL----KDYAFIHFDE 54 (103)
T ss_dssp CCCCCEEEECCC--TTC---------CHHHHHHHHHHHSCEEEEEEC----SSCEEEEESS
T ss_pred CCCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCC
Confidence 345789999992 222 357899999999999999996 5799999875
No 339
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.42 E-value=0.0088 Score=48.29 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=38.9
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEE-EEecC----CCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSV-KVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V-~V~~~----~p~Gvv~V~f~~~ 478 (487)
..++|+|.||- .++ .+++|++.|++||.|.+| .|... .+.|+++|.|...
T Consensus 4 ~~~~l~V~nLp--~~~---------t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~ 58 (96)
T 1x5t_A 4 GSSGIFIGNLD--PEI---------DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 58 (96)
T ss_dssp CCCEEEEECCC--TTC---------CHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSH
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCH
Confidence 45799999992 222 357899999999999999 88643 3579999998753
No 340
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=95.41 E-value=0.019 Score=50.76 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=35.4
Q ss_pred EEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCce-EEEEEEe
Q 011382 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEIN-CILIIFL 477 (487)
Q Consensus 421 ~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gv-v~V~f~~ 477 (487)
.|++.||..+- .+++|++.|++||.|.+|+|+.+. .|+ ++|.|..
T Consensus 30 ~I~V~NL~~~v-----------te~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~ 75 (130)
T 3zzy_A 30 RIIVENLFYPV-----------TLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYAD 75 (130)
T ss_dssp EEEEESCCSCC-----------CHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESC
T ss_pred EEEECCCCCCC-----------CHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECC
Confidence 46699994321 246799999999999999998765 577 9999865
No 341
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=95.36 E-value=0.013 Score=50.69 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=38.1
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEE--EEEecC----CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDS--VKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~--V~V~~~----~p~Gvv~V~f~~ 477 (487)
...++|+|.||- .++ .+++|++.|++||.|.. |+|+.. .+.|++||.|..
T Consensus 21 ~~~~~lfV~nL~--~~~---------te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~ 76 (131)
T 2m2b_A 21 NANDTIILRNLN--PHS---------TMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLST 76 (131)
T ss_dssp CCCCEEEECSCC--TTC---------CSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCH
T ss_pred CCCCEEEEeCCC--CCC---------CHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECC
Confidence 346799999992 221 24789999999999977 888643 367999999875
No 342
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=95.34 E-value=0.013 Score=47.40 Aligned_cols=49 Identities=8% Similarity=-0.035 Sum_probs=38.0
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
...++|+|.|+- ..+ .++||++.|++||.|..| .....+.|+++|.|..
T Consensus 14 ~~~~~l~V~nL~--~~~---------t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~ 62 (96)
T 1fjc_A 14 RAARTLLAKNLS--FNI---------TEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKS 62 (96)
T ss_dssp TGGGEEEEESCC--SSC---------CHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESS
T ss_pred CCCCEEEEeCCC--CCC---------CHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECC
Confidence 456899999992 222 357899999999999888 4455678999999875
No 343
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=95.32 E-value=0.018 Score=46.93 Aligned_cols=50 Identities=8% Similarity=0.051 Sum_probs=38.8
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEE--------EEEecC----CCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDS--------VKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~--------V~V~~~----~p~Gvv~V~f~~ 477 (487)
...++|++.|+- .+. .++||++.|++||.|.+ |.|... ...|+++|.|..
T Consensus 11 ~~~~~l~V~nLp--~~~---------t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~ 72 (99)
T 2la6_A 11 SDNNTIFVQGLG--ENV---------TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 72 (99)
T ss_dssp CCCSEEEEECCC--SSC---------CHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSS
T ss_pred CCCCEEEEeCCC--CCC---------CHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECC
Confidence 356799999992 222 35789999999999999 888643 347999999865
No 344
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.31 E-value=0.022 Score=47.80 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=37.3
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHH---HHhccCcceEEEEEecC-------CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQ---EECVKIGPVDSVKVMKL-------NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVr---eEC~KfG~V~~V~V~~~-------~p~Gvv~V~f~~ 477 (487)
..++|++.|| |.++ .++||+ +.|++||.|.+|.|... .+.|+++|.|..
T Consensus 14 ~~~~l~V~nL--p~~~---------~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~ 72 (111)
T 2cpi_A 14 QKNLVFVVGL--SQRL---------ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIR 72 (111)
T ss_dssp CSSCEEEEEE--CTTT---------CCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESS
T ss_pred CCCEEEEECC--CCCC---------CHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECc
Confidence 4578999999 2222 235677 99999999999999743 345999999975
No 345
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=95.31 E-value=0.024 Score=48.75 Aligned_cols=49 Identities=6% Similarity=0.028 Sum_probs=39.1
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
..++|+|.||- ..+ .+++|++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 62 ~~~~l~v~nlp--~~~---------~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 114 (140)
T 2ku7_A 62 TKRVLYVGGLA--EEV---------DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFEL 114 (140)
T ss_dssp SCCEEEEECCC--TTC---------CHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESC
T ss_pred CCcEEEEEeCC--CCC---------CHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECC
Confidence 46799999992 222 35789999999999999999643 468999999865
No 346
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.20 E-value=0.012 Score=49.07 Aligned_cols=51 Identities=6% Similarity=-0.040 Sum_probs=39.1
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceE--------EEEEecC----CCCceEEEEEEee
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVD--------SVKVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~--------~V~V~~~----~p~Gvv~V~f~~~ 478 (487)
...++|+|.||- .++ .+++|++.|++||.|. .|.|+.. .+.|+++|.|...
T Consensus 13 ~~~~~l~V~nLp--~~~---------t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~ 75 (113)
T 2cpe_A 13 SDNSAIYVQGLN--DSV---------TLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP 75 (113)
T ss_dssp CCCCEEEEECCC--TTC---------CHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSH
T ss_pred CCCCEEEEcCCC--CCC---------CHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCH
Confidence 346799999992 222 3578999999999999 6888643 3579999998763
No 347
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.17 E-value=0.039 Score=44.89 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=37.7
Q ss_pred CCCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccC--cceEEEEEecCCCCceEEEEEEee
Q 011382 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKI--GPVDSVKVMKLNVEINCILIIFLL 478 (487)
Q Consensus 416 ~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~Kf--G~V~~V~V~~~~p~Gvv~V~f~~~ 478 (487)
....++|+|.||-. ++ .+++|++.|++| |.|.+|.+. .|+++|.|...
T Consensus 12 ~~~~~~l~V~nLp~--~~---------t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~ 61 (99)
T 2cpd_A 12 MSSVKILYVRNLML--ST---------SEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNR 61 (99)
T ss_dssp SSCCCEEEEESCCT--TC---------CHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSH
T ss_pred cCCcCEEEEeCCCC--CC---------CHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCH
Confidence 34568999999922 22 357899999999 999999984 68999998753
No 348
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=95.15 E-value=0.018 Score=48.80 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=35.7
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
..+|+|.||- .+. .++||++.|++||.|.+|.|+.. |+++|.|..
T Consensus 16 ~~~l~V~nLp--~~~---------t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~ 60 (115)
T 3beg_B 16 ENRVVVSGLP--PSG---------SWQDLKDHMREAGDVCYADVYRD---GTGVVEFVR 60 (115)
T ss_dssp -CCEEEEECC--SSC---------CTTHHHHHHGGGSCEEEEEECTT---SEEEEEESS
T ss_pred CcEEEEeCCC--CCC---------CHHHHHHHHHhcCCeEEEEEecC---CEEEEEECC
Confidence 4689999992 222 24688999999999999999754 999999875
No 349
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.11 E-value=0.052 Score=43.77 Aligned_cols=49 Identities=22% Similarity=0.167 Sum_probs=35.7
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~~ 478 (487)
..++|++.|+- .+. .++||++.|++||.|.+| +.++....+++|.|...
T Consensus 7 ~~~~l~V~nl~--~~~---------t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~ 55 (94)
T 2e5g_A 7 GLRSVFVSGFP--RGV---------DSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDV 55 (94)
T ss_dssp TCCEEEEECCC--TTC---------CHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSH
T ss_pred CCCEEEEECCC--CCC---------CHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCH
Confidence 45799999992 222 357899999999999999 44443322899998653
No 350
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.08 E-value=0.02 Score=48.25 Aligned_cols=49 Identities=10% Similarity=-0.082 Sum_probs=38.4
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcce-EEEEEec---CCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPV-DSVKVMK---LNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V-~~V~V~~---~~p~Gvv~V~f~~ 477 (487)
..++|+|.||- .++ .++||++.|++||.| .+|.|.. ..+.|++||.|..
T Consensus 14 ~~~~l~V~nLp--~~~---------t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~ 66 (114)
T 2cpy_A 14 AKVCAHITNIP--FSI---------TKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKN 66 (114)
T ss_dssp CCCEEEEESCC--TTS---------CHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSS
T ss_pred CccEEEEeCcC--CcC---------CHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECC
Confidence 45799999992 222 357899999999999 8888864 3468999999875
No 351
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.05 E-value=0.1 Score=44.53 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=54.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhc----C-CccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCCcc
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSK----C-GIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP 362 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk----~-G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg~~ 362 (487)
..+|.|.|||.++.++-|.-+|++ . |.|. .++. . + +-|+|+|.+...|+..++ -..+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~--------~v~~--~---~---~~AvItF~d~~va~rVL~-k~~H~ 70 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVL--------SWQR--L---G---CGGVLTFREPADAERVLA-QADHE 70 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEE--------EEEE--E---T---TEEEEEESSHHHHHHHHT-CSCCB
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceee--------EEEE--c---C---CcEEEEEcChHHHHHHhc-CCcce
Confidence 358999999999999999999986 2 4666 5544 2 2 578999999999999886 34778
Q ss_pred cCCCCceeEEEEecc
Q 011382 363 FRPDGKIPMSVTQAK 377 (487)
Q Consensus 363 ~~~G~~i~I~V~~A~ 377 (487)
|. |. .|.|.+..
T Consensus 71 L~-~~--~LsV~P~~ 82 (104)
T 2dhx_A 71 LH-GA--QLSLRPAP 82 (104)
T ss_dssp SS-SS--BCEEEECC
T ss_pred ec-Ce--EEEEEcCC
Confidence 87 53 57776643
No 352
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.04 E-value=0.025 Score=45.26 Aligned_cols=46 Identities=9% Similarity=-0.016 Sum_probs=36.9
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~~ 478 (487)
..++|++.||- .++ .++||++.|++||.|.+|.|. .|+++|.|...
T Consensus 8 ~~~~l~V~nlp--~~~---------t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~ 53 (90)
T 2dnp_A 8 NTWKIFVGNVS--AAC---------TSQELRSLFERRGRVIECDVV----KDYAFVHMEKE 53 (90)
T ss_dssp CSCCEEEESCC--TTC---------CHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCH
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCH
Confidence 46789999992 222 357899999999999999996 45999998864
No 353
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.94 E-value=0.014 Score=48.70 Aligned_cols=49 Identities=8% Similarity=0.031 Sum_probs=39.1
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcce----EEEEEecCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPV----DSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V----~~V~V~~~~p~Gvv~V~f~~ 477 (487)
.+++|+|.||- .++ .+++|++.|++||.| ..+.+....+.|+++|.|..
T Consensus 24 ~~~~l~V~nLp--~~~---------t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~ 76 (115)
T 2cpx_A 24 PNKVLYLKNLS--PRV---------TERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPN 76 (115)
T ss_dssp CCSEEEEECCC--TTC---------CHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSS
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECC
Confidence 46799999982 222 357899999999999 67777777789999999875
No 354
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=94.93 E-value=0.03 Score=46.63 Aligned_cols=45 Identities=20% Similarity=0.148 Sum_probs=36.7
Q ss_pred CCeEEEeeccCChhh-hccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAE-MRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~e-l~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
..++|+|.||-. + + .++||++.|++||.|.+|.| +.|+++|.|..
T Consensus 26 ~~~~l~V~nl~~--~~~---------t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~ 71 (110)
T 1wf1_A 26 INSRVFIGNLNT--ALV---------KKSDVETIFSKYGRVAGCSV----HKGYAFVQYSN 71 (110)
T ss_dssp CSSEEEECSCCC--SSC---------CHHHHHHHHGGGSCCSEEEE----ETTEEEEECSS
T ss_pred CCcEEEEeCCCc--ccC---------CHHHHHHHHHhCCCeEEEEE----eCCEEEEEECC
Confidence 357999999932 1 1 25789999999999999999 68999999865
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=94.93 E-value=0.022 Score=49.02 Aligned_cols=45 Identities=7% Similarity=-0.088 Sum_probs=37.1
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
..++|+|.|+ + + .++||++.|++||.|.+|.|. ...|+++|.|..
T Consensus 38 ~~~~lfVgnl-~---~---------te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~ 82 (121)
T 2bz2_A 38 KGNTLYVYGE-D---M---------TPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEK 82 (121)
T ss_dssp CCCEEEEECS-S---C---------CHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSS
T ss_pred CCCEEEEcCC-C---C---------CHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECC
Confidence 4578999994 2 1 357899999999999999995 678999999865
No 356
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=94.91 E-value=0.012 Score=47.32 Aligned_cols=49 Identities=8% Similarity=0.035 Sum_probs=37.1
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
.+++|+|.|| |.++ .++||++.|++||.|.+|.+... .+.|+++|.|..
T Consensus 14 ~~~~l~V~nl--p~~~---------t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~ 66 (95)
T 2ek1_A 14 GPTVIKVQNM--PFTV---------SIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFES 66 (95)
T ss_dssp -CEEEEEECC--CTTC---------CHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESS
T ss_pred CCCEEEEeCC--CCCC---------CHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECC
Confidence 4589999999 2222 35789999999999987776542 356999999875
No 357
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=94.85 E-value=0.013 Score=46.81 Aligned_cols=47 Identities=13% Similarity=0.050 Sum_probs=37.0
Q ss_pred eEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec----CCCCceEEEEEEe
Q 011382 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK----LNVEINCILIIFL 477 (487)
Q Consensus 420 ~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~----~~p~Gvv~V~f~~ 477 (487)
++|++.|+- .++ .+++|++.|++||.|.+|.|.. ..+.|+++|.|..
T Consensus 2 ~~l~V~nLp--~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 52 (90)
T 2ki2_A 2 RNIYVGNLV--YSA---------TSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQE 52 (90)
T ss_dssp EEEEEEEEC--TTS---------SHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECT
T ss_pred cEEEECCCC--CCC---------CHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECC
Confidence 578999982 221 3578999999999999999974 3458999999964
No 358
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=94.82 E-value=0.017 Score=53.66 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=37.7
Q ss_pred eEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec---CCCCceEEEEEEe
Q 011382 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK---LNVEINCILIIFL 477 (487)
Q Consensus 420 ~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~---~~p~Gvv~V~f~~ 477 (487)
++|++.|+- .+. ..++|++.|++||.|.+|.|.. ....|+|+|.|..
T Consensus 110 ~~l~V~nLp--~~~---------t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~ 159 (193)
T 2voo_A 110 RSVYIKGFP--TDA---------TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDS 159 (193)
T ss_dssp TEEEEECCC--TTC---------CHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESS
T ss_pred CEEEecCCC--CcC---------CHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECC
Confidence 589999993 221 3588999999999999999975 3457999999965
No 359
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=94.78 E-value=0.019 Score=44.14 Aligned_cols=45 Identities=13% Similarity=0.044 Sum_probs=34.8
Q ss_pred EEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 422 VILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 422 VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
|++.|+ |.++ .++||++.|++||.|.+|.|... .+.|+++|.|..
T Consensus 2 l~v~nl--p~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 50 (75)
T 2mss_A 2 IFVGGL--SVNT---------TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 50 (75)
T ss_dssp EEEECC--CSSC---------CHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSC
T ss_pred EEEecC--CCCC---------CHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECC
Confidence 677887 2221 35789999999999999999643 357999999876
No 360
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=94.72 E-value=0.052 Score=52.76 Aligned_cols=64 Identities=6% Similarity=0.065 Sum_probs=44.8
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe--------eccCCCCc
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL--------LEFMGLPQ 485 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~--------~~~~g~~~ 485 (487)
..++|+|.|+-. ++..-.--...++++|++.|++||.|.+|.|.. ..|++||.|.. ..|+|.++
T Consensus 133 ~~rtLfVgnL~~--~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 133 KNKTLYVGGIDG--ALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCEEEEECTTG--GGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCceeecCCCCh--hhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 457999999822 210000001336899999999999999999974 48999999975 34666554
No 361
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.71 E-value=0.032 Score=47.29 Aligned_cols=54 Identities=24% Similarity=0.371 Sum_probs=46.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 011382 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD 359 (487)
Q Consensus 290 ~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ld 359 (487)
+||+-++|...-..+|..+|+.||.|. |+.+-|- -|||.|.+++.|..|+.++.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEEE---------EEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 455559999999999999999999776 8877662 69999999999999999765
No 362
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=94.69 E-value=0.026 Score=51.87 Aligned_cols=49 Identities=14% Similarity=0.019 Sum_probs=39.1
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec---CCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK---LNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~---~~p~Gvv~V~f~~ 477 (487)
..++|+|.|+- .++ .++||++.|++||.|.+|.|.. ..+.|+|+|.|..
T Consensus 87 ~~~~l~V~nLp--~~~---------te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~ 138 (177)
T 2f3j_A 87 TGAKLLVSNLD--FGV---------SDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFER 138 (177)
T ss_dssp TCEEEEEECCC--SCC---------CHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESC
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCC
Confidence 46799999992 221 3578999999999999999975 3467999999875
No 363
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.64 E-value=0.023 Score=47.32 Aligned_cols=50 Identities=16% Similarity=0.028 Sum_probs=37.3
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC---CCCceEEEEEEee
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL---NVEINCILIIFLL 478 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~---~p~Gvv~V~f~~~ 478 (487)
...++|+|+||- .+. .++||++.|++||.| +|.|... .+.|++||.|...
T Consensus 13 ~~~~~l~V~nLp--~~~---------te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~ 65 (102)
T 1wez_A 13 TTGHCVHMRGLP--YRA---------TENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATH 65 (102)
T ss_dssp SSSCEEEEESCC--TTC---------CHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSS
T ss_pred CCCCEEEEeCCC--CCC---------CHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCH
Confidence 345799999992 222 358899999999965 8888643 3578999998763
No 364
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=94.60 E-value=0.069 Score=46.65 Aligned_cols=48 Identities=6% Similarity=-0.060 Sum_probs=36.4
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceE--EEEEec---CCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVD--SVKVMK---LNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~--~V~V~~---~~p~Gvv~V~f~~ 477 (487)
..++|+|+||- .+. .++||++.|++| .|. .|.|.. ..+.|++||.|..
T Consensus 41 ~~~~lfVgnLp--~~~---------te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~ 93 (126)
T 2hgm_A 41 NDGFVRLRGLP--FGC---------TKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFAS 93 (126)
T ss_dssp SCCEEEEECCC--TTC---------CHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESS
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECC
Confidence 45789999992 221 358999999999 566 888863 3468999999975
No 365
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=94.47 E-value=0.037 Score=49.76 Aligned_cols=48 Identities=13% Similarity=0.013 Sum_probs=37.3
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCc--ceEEEEEecC----CCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIG--PVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG--~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
.++|+|.||- .++ .++||++.|++|| .|.+|.|+.. ...|++||.|..
T Consensus 55 ~~~lfVgnLp--~~~---------te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~ 108 (156)
T 3n9u_C 55 RAAVYVGSFS--WWT---------TDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVAS 108 (156)
T ss_dssp -CEEEEECCC--TTC---------CHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESC
T ss_pred CCEEEEeCCC--CCC---------CHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECC
Confidence 4699999992 221 3578999999999 9999999633 357999999876
No 366
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=94.38 E-value=0.033 Score=53.21 Aligned_cols=49 Identities=8% Similarity=0.013 Sum_probs=37.6
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCc--ceEEEEEecC----CCCceEEEEEEee
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIG--PVDSVKVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG--~V~~V~V~~~----~p~Gvv~V~f~~~ 478 (487)
.++|+|.||- .++ .++||++.|++|| .|.+|.|+.. ...|++||.|...
T Consensus 68 ~~~lfVgnL~--~~~---------te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~ 122 (229)
T 3q2s_C 68 RIALYIGNLT--WWT---------TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSE 122 (229)
T ss_dssp -CEEEEESCC--TTC---------CHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCT
T ss_pred ccEEEEeCCC--CCC---------CHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCH
Confidence 4689999992 121 3578999999999 9999999643 3579999999763
No 367
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.35 E-value=0.019 Score=46.53 Aligned_cols=49 Identities=8% Similarity=0.031 Sum_probs=37.1
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC----CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
..++|+|.|| |.++ .++||++.|++||.|.++.+... .+.|+++|.|..
T Consensus 14 ~~~~l~v~nL--p~~~---------t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~ 66 (98)
T 2cqp_A 14 GPTIIKVQNM--PFTV---------SIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFES 66 (98)
T ss_dssp SSEEEEEESC--CTTC---------CHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESC
T ss_pred CCCEEEEeCC--CCCC---------CHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECC
Confidence 4679999999 2222 35789999999999987765432 357999999875
No 368
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.33 E-value=0.025 Score=47.63 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=37.0
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec-------CCCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK-------LNVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~-------~~p~Gvv~V~f~~~ 478 (487)
.+++|++.||- .+. .+++|++.|++||.|. +.+.. ..+.|+++|.|...
T Consensus 7 ~~~~lfVgnLp--~~~---------te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~ 62 (114)
T 2dnl_A 7 GSRKVFVGGLP--PDI---------DEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEE 62 (114)
T ss_dssp CCCCEEEECCC--TTC---------CHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSH
T ss_pred CCCEEEEcCCC--CCC---------CHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCH
Confidence 45789999992 222 3578999999999999 66643 25589999998753
No 369
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.31 E-value=0.086 Score=46.80 Aligned_cols=86 Identities=19% Similarity=0.177 Sum_probs=55.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeE--EEE-e--cCCCC-CccceEEEEeCCHHHHHHHHHhcCC
Q 011382 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRI--KIY-V--DKETG-MKKGDALVTYLKEPSVALATQLLDG 360 (487)
Q Consensus 287 ~nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~i--kl~-~--Dk~tG-~~KG~AfV~F~~~esa~~Ai~~Ldg 360 (487)
..+.|.|-|.|.+.+ ..+...|++||.|.+|..-..+.. .+- + .+-.+ ....+-.|+|.++.+|.+||+ .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 456799999987655 456679999999997643221111 000 0 00001 124577999999999999996 799
Q ss_pred cccCCCCceeEEEEecc
Q 011382 361 TPFRPDGKIPMSVTQAK 377 (487)
Q Consensus 361 ~~~~~G~~i~I~V~~A~ 377 (487)
..|. |. .|-|.+-.
T Consensus 84 ~ii~-G~--mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFN-GV--LLGVIPYT 97 (132)
T ss_dssp CEET-TE--ECEEEECC
T ss_pred eEeC-cE--EEEEEECC
Confidence 9997 63 56777664
No 370
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=94.29 E-value=0.026 Score=50.20 Aligned_cols=47 Identities=13% Similarity=-0.063 Sum_probs=36.3
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec---CCCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK---LNVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~---~~p~Gvv~V~f~~ 477 (487)
.++|+|.||- .+. .++||++.|++|| |.+|.|.. ..+.|++||.|..
T Consensus 46 ~~~lfV~nLp--~~~---------te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~ 95 (139)
T 2hgn_A 46 GHCVHMRGLP--YKA---------TENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFAT 95 (139)
T ss_dssp CCCEECCSCC--TTC---------CHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSH
T ss_pred CCEEEEeCCC--CCC---------CHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCC
Confidence 4689999992 221 3588999999999 66998863 3468999999864
No 371
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=94.17 E-value=0.031 Score=47.59 Aligned_cols=49 Identities=16% Similarity=-0.074 Sum_probs=38.0
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcc---eEEEEEecC---CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGP---VDSVKVMKL---NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~---V~~V~V~~~---~p~Gvv~V~f~~ 477 (487)
..++|+|+||- .+. .++||++.|++||. |.+|.|... .+.|++||.|..
T Consensus 16 ~~~~l~V~nLp--~~~---------te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~ 70 (118)
T 2db1_A 16 EGYVVKLRGLP--WSC---------SIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELES 70 (118)
T ss_dssp CCCEEEEESCC--TTC---------CHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSS
T ss_pred CCcEEEEeCCC--CCC---------CHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECC
Confidence 35789999992 221 35789999999999 899998643 357899999875
No 372
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=94.16 E-value=0.016 Score=46.54 Aligned_cols=46 Identities=9% Similarity=0.046 Sum_probs=34.3
Q ss_pred EEEeeccCChhhhccchhhHHHHHHHHHHHhccCc--ceEEEEEecC----CCCceEEEEEEe
Q 011382 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIG--PVDSVKVMKL----NVEINCILIIFL 477 (487)
Q Consensus 421 ~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG--~V~~V~V~~~----~p~Gvv~V~f~~ 477 (487)
+|++.|+- .+. .++||++.|++|| .|.+|.|... .+.|+++|.|..
T Consensus 3 ~l~V~nL~--~~~---------t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~ 54 (90)
T 3p5t_L 3 ALYIGNLT--WWT---------TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGS 54 (90)
T ss_dssp -CEEESCC--TTC---------CHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-C
T ss_pred EEEEeCCC--CCC---------CHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECC
Confidence 68899982 221 3578999999999 9999998653 357899999876
No 373
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.13 E-value=0.024 Score=46.31 Aligned_cols=49 Identities=12% Similarity=-0.033 Sum_probs=35.3
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
..++|+|.||- .++ .++||++.|++||.|.-+......+.|+++|.|..
T Consensus 14 ~~~~l~V~nLp--~~~---------t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~ 62 (101)
T 2fc9_A 14 ESKTLVLSNLS--YSA---------TEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFAS 62 (101)
T ss_dssp CCSEEEEESCC--TTC---------CHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSS
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECC
Confidence 46899999992 222 35789999999999832222234568999999875
No 374
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.10 E-value=0.029 Score=59.58 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=41.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHH
Q 011382 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQ 356 (487)
Q Consensus 289 t~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~ 356 (487)
++|||. .|..+++.+|.++|++||.|. ++.+|.++ | -||+|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~--------~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPIN--------NHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCC--------CEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcc--------eEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 489998 699999999999999999999 88888653 3 599999999999997654
No 375
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.99 E-value=0.026 Score=49.08 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=36.5
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcce----EEEEEecC---CCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPV----DSVKVMKL---NVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V----~~V~V~~~---~p~Gvv~V~f~~ 477 (487)
..+|+|+|| |.+. .++||++.|++||.| ..|.|... .+.|++||.|..
T Consensus 23 ~~~v~V~nL--p~~~---------te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~ 77 (123)
T 2dha_A 23 QVIVRMRGL--PFTA---------TAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFAC 77 (123)
T ss_dssp CCEEEECSC--CTTC---------CHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSS
T ss_pred CCEEEEeCC--CCCC---------CHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECC
Confidence 469999999 2221 358999999999975 68887643 357999999865
No 376
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=93.96 E-value=0.041 Score=56.22 Aligned_cols=50 Identities=8% Similarity=-0.120 Sum_probs=38.4
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
.++++|++.|+=-+.. -.++||++.|++||.|.+|.+.. ..|++||.|..
T Consensus 16 ~ps~~l~VgN~gl~~~---------~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~ 65 (345)
T 3tht_A 16 YATQSLVVANGGLGNG---------VSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRT 65 (345)
T ss_dssp SCCSEEEEETCSGGGT---------CCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESS
T ss_pred CCCCEEEEEcCCCCCC---------CCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECC
Confidence 4678999999511111 13578999999999999999865 57999999976
No 377
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.59 E-value=0.037 Score=47.20 Aligned_cols=50 Identities=12% Similarity=-0.072 Sum_probs=36.8
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEE-EEEecC---CCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDS-VKVMKL---NVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~-V~V~~~---~p~Gvv~V~f~~~ 478 (487)
...+|+|.||- .+. .++||++.|++||.|.. +.|.+. .+.|++||.|...
T Consensus 24 ~~~~l~V~nLp--~~~---------te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~ 77 (124)
T 1wel_A 24 AGFCVYLKGLP--FEA---------ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNE 77 (124)
T ss_dssp CCCEEEEECCC--TTC---------CHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSS
T ss_pred CCcEEEEeCCC--CCC---------CHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCH
Confidence 35799999992 221 35789999999999987 444332 3579999998764
No 378
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=93.46 E-value=0.073 Score=44.18 Aligned_cols=49 Identities=4% Similarity=-0.170 Sum_probs=37.9
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcc---eEEEEEecC---CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGP---VDSVKVMKL---NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~---V~~V~V~~~---~p~Gvv~V~f~~ 477 (487)
...+|+|+||- .+. .++||++.|++||. |.+|.|... .+.|+++|.|..
T Consensus 10 ~~~~l~V~nLp--~~~---------te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~ 64 (107)
T 2lmi_A 10 DVFLIRAQGLP--WSC---------TMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMES 64 (107)
T ss_dssp SCCEEEEECCC--SSC---------CSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSS
T ss_pred CccEEEEeCCC--CCC---------CHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECC
Confidence 45789999992 221 24789999999998 999998643 467999999976
No 379
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.44 E-value=0.075 Score=45.02 Aligned_cols=47 Identities=21% Similarity=0.154 Sum_probs=36.9
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec---CCCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK---LNVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~---~~p~Gvv~V~f~~ 477 (487)
..+|+|+||- .+. .++||++.|+.| .|.+|.|.. ..+.|++||.|..
T Consensus 16 ~~~v~V~nLp--~~~---------te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~ 65 (109)
T 2dnn_A 16 DLYVSVHGMP--FSA---------MENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLS 65 (109)
T ss_dssp HHEEEEECCC--SSC---------CHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSS
T ss_pred CCEEEEeCCC--CCC---------CHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECC
Confidence 3689999992 221 358999999999 899999963 3468999999965
No 380
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.40 E-value=0.11 Score=43.81 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=56.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCC-C-CccceEEEEeCCHHHHHHHHHhcCCcccCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKET-G-MKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~t-G-~~KG~AfV~F~~~esa~~Ai~~Ldg~~~~~ 365 (487)
.-+|.|..||+.+|+++|.+.++..=.+. ....+.-+.+ + ..-.-|||.|.+.+++..-.+.+||..|.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d--------~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHD--------YFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEE--------ECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccc--------eEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 34699999999999999887776542221 1111110001 1 112458999999999999999999999975
Q ss_pred --CCceeEEEEecccc
Q 011382 366 --DGKIPMSVTQAKFE 379 (487)
Q Consensus 366 --G~~i~I~V~~A~~~ 379 (487)
|...+-.|+.|-++
T Consensus 81 ~kg~~~~a~VE~APyq 96 (97)
T 2l08_A 81 SKGLEYPAVVEFAPFQ 96 (97)
T ss_dssp TTCCEEEEEEEECCCC
T ss_pred CCCCEeeeEEEecCCC
Confidence 33345567777653
No 381
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=93.39 E-value=0.1 Score=41.01 Aligned_cols=47 Identities=13% Similarity=0.028 Sum_probs=37.3
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccC----c-------ceEEEEEecCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKI----G-------PVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~Kf----G-------~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
..++|++.|+- .+. .++||++.|++| | .|.+|.+.. ..|+++|.|..
T Consensus 5 ~~~~l~V~nLp--~~~---------t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~ 62 (87)
T 2hzc_A 5 SARRLYVGNIP--FGI---------TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRS 62 (87)
T ss_dssp GGGEEEEESCC--TTC---------CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESS
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCC
Confidence 45799999992 222 357899999999 8 999999964 38999999975
No 382
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=92.38 E-value=0.015 Score=48.87 Aligned_cols=50 Identities=8% Similarity=0.050 Sum_probs=37.8
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEE--------EEEecC----CCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDS--------VKVMKL----NVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~--------V~V~~~----~p~Gvv~V~f~~~ 478 (487)
..++|+|.|| |.++ .++||++.|++||.|.. |.|+.. .+.|+++|.|...
T Consensus 6 ~~~~l~V~nL--p~~~---------t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~ 67 (116)
T 2lcw_A 6 DNNTIFVQGL--GENV---------TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDP 67 (116)
Confidence 3578999999 2221 45789999999999998 777543 3579999998753
No 383
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=93.22 E-value=0.059 Score=47.57 Aligned_cols=49 Identities=14% Similarity=-0.100 Sum_probs=37.8
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcc---eEEEEEecC---CCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGP---VDSVKVMKL---NVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~---V~~V~V~~~---~p~Gvv~V~f~~ 477 (487)
..++|+|+||-. +. .++||++.|++||. |.+|.|... .+.|++||.|..
T Consensus 43 ~~~~lfVgnLp~--~~---------te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~ 97 (136)
T 2hgl_A 43 EGFVVKLRGLPW--SC---------SVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGS 97 (136)
T ss_dssp TTCEEEEESCCT--TC---------CHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSS
T ss_pred CCCEEEEeCCCC--CC---------CHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECC
Confidence 357899999922 21 35889999999999 889988632 357899999865
No 384
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=92.93 E-value=0.033 Score=45.41 Aligned_cols=50 Identities=6% Similarity=-0.052 Sum_probs=37.5
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec---CCCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK---LNVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~---~~p~Gvv~V~f~~~ 478 (487)
..++|+|.||- .++ .++||++.|++||.|..+.+.+ ..+.|+++|.|...
T Consensus 16 ~~~~l~V~nLp--~~~---------t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~ 68 (101)
T 1fj7_A 16 TPFNLFIGNLN--PNK---------SVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESA 68 (101)
T ss_dssp CSEEEEEECCC--TTS---------CHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSH
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCH
Confidence 46799999992 222 3578999999999998844433 35789999999763
No 385
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.63 E-value=0.14 Score=40.72 Aligned_cols=49 Identities=16% Similarity=-0.012 Sum_probs=37.8
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecC---CCCceEEEEEEee
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKL---NVEINCILIIFLL 478 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~---~p~Gvv~V~f~~~ 478 (487)
..++|+|.||- .+. .++||++.|++| .|.+|.|... .+.|+++|.|...
T Consensus 9 ~~~~l~v~nLp--~~~---------t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~ 60 (91)
T 2dgw_A 9 TCHTVKLRGAP--FNV---------TEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNE 60 (91)
T ss_dssp CCCEEEEECCC--SSC---------CHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSH
T ss_pred CccEEEEECCC--CCC---------CHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCH
Confidence 45799999992 221 357899999999 9999999754 3478999998753
No 386
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.58 E-value=0.04 Score=44.19 Aligned_cols=46 Identities=2% Similarity=-0.161 Sum_probs=35.7
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcc-eEEEEEecCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGP-VDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~-V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
..++|++.||- .++ .++||++.|++||. |..+.|. ..|+++|.|..
T Consensus 7 ~~~~l~V~nLp--~~~---------t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~ 53 (93)
T 2cqh_A 7 GMNKLYIGNLS--PAV---------TADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPD 53 (93)
T ss_dssp CCCCEEEECCC--TTC---------CHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSC
T ss_pred CCcEEEEeCCC--CCC---------CHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECC
Confidence 45789999992 222 35789999999999 7777773 47999999876
No 387
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=91.67 E-value=0.091 Score=41.86 Aligned_cols=45 Identities=4% Similarity=0.042 Sum_probs=36.4
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
.++|++.|+- .+. .++||++.|++| .|.+|.|. .+.|+++|.|..
T Consensus 5 ~~~l~V~nLp--~~~---------t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~ 49 (88)
T 1wg1_A 5 SSGILVKNLP--QDS---------NCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLN 49 (88)
T ss_dssp CCCEEEESCC--SSC---------CHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSC
T ss_pred CCEEEEeCCC--CCC---------CHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECC
Confidence 4689999992 222 357899999999 99999994 678999999865
No 388
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=91.30 E-value=0.16 Score=45.26 Aligned_cols=50 Identities=4% Similarity=0.006 Sum_probs=36.8
Q ss_pred eEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEec-C---CCCceEEEEEE
Q 011382 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMK-L---NVEINCILIIF 476 (487)
Q Consensus 420 ~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~-~---~p~Gvv~V~f~ 476 (487)
..|++.|+++.... .--..+|++.|+.||+|.+|.++. + .|.|+++|.|.
T Consensus 3 ~kI~VgnL~~~~~~-------~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~ 56 (136)
T 2j8a_A 3 CEIVVYPAQDSTTT-------NIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYA 56 (136)
T ss_dssp CEEEEEESSSSCCC-------CCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC
T ss_pred cEEEEeCCCCCCCC-------CCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEEC
Confidence 46888888442211 113578999999999999999863 3 35899999997
No 389
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.21 E-value=0.29 Score=40.78 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=35.1
Q ss_pred CeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEE
Q 011382 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIF 476 (487)
Q Consensus 419 ~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~ 476 (487)
..+|++...-+.++ +.-+..++..+|.+.|+.||.|..|+|... .++|.|.
T Consensus 7 d~tv~V~~~~~~~~---~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~ 57 (91)
T 2dnr_A 7 GGTVLVSIKSSLPE---NNFFDDALIDELLQQFASFGEVILIRFVED----KMWVTFL 57 (91)
T ss_dssp SCEEEEEEECSSTT---TCSCCHHHHHHHHHHHHTTCCEEEEEECSS----SEEEEES
T ss_pred CCeEEEEeccCccc---cccCCHHHHHHHHHHHHhCCCeEEEEEecC----CEEEEEC
Confidence 34666666432221 223345688999999999999999999653 3788883
No 390
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=90.90 E-value=0.13 Score=44.79 Aligned_cols=49 Identities=8% Similarity=0.019 Sum_probs=36.7
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEE--------EEe-cCCCCceEEEEEEe
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSV--------KVM-KLNVEINCILIIFL 477 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V--------~V~-~~~p~Gvv~V~f~~ 477 (487)
++++|+|.||- ..+ ..++|++.|++||.|.+| .+. .....|+++|.|..
T Consensus 44 ~~~~l~V~nLp--~~~---------te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~ 101 (143)
T 3egn_A 44 PNCRIYVKNLA--KHV---------QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPN 101 (143)
T ss_dssp CCSEEEEEEEC--TTC---------CHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSS
T ss_pred CCCEEEEeCCC--CCC---------CHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCC
Confidence 46799999992 221 357899999999999874 332 35678999999875
No 391
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.76 E-value=0.33 Score=42.37 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=38.2
Q ss_pred CCCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEEe
Q 011382 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIFL 477 (487)
Q Consensus 416 ~~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~~ 477 (487)
.....+|++.|+-. ++ -.++||++.|++||+|..|.+..... .+||+|..
T Consensus 15 ~~~G~il~v~~l~~------~~----~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~ 64 (121)
T 1owx_A 15 EKIGCLLKFSGDLD------DQ----TCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKE 64 (121)
T ss_dssp CCCCCEEEEEESCC------SS----CCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESS
T ss_pred ccCCeEEEEecCCC------Cc----CCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECC
Confidence 34567999999833 10 14789999999999999999976555 48888876
No 392
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.56 E-value=0.44 Score=38.56 Aligned_cols=51 Identities=8% Similarity=-0.135 Sum_probs=34.2
Q ss_pred CCCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEe-cCCCCceEEEEEEee
Q 011382 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVM-KLNVEINCILIIFLL 478 (487)
Q Consensus 417 ~~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~-~~~p~Gvv~V~f~~~ 478 (487)
...++|+|.||- .++ .++||++.|++|+.|.-+.-. .....|+++|.|...
T Consensus 13 ~~~~~l~V~nLp--~~~---------t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~ 64 (102)
T 2fc8_A 13 QPSKTLFVKGLS--EDT---------TEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSE 64 (102)
T ss_dssp CCCSSEEEECCC--TTC---------CHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSH
T ss_pred CCCCEEEEeCCC--Ccc---------CHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCH
Confidence 356789999992 222 357899999999755443321 223579999998753
No 393
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.27 E-value=1 Score=37.70 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=36.1
Q ss_pred CCeEEEeeccCChhhhccchhhHHHHHHHHHHHhccCcceEEEEEecCCCCceEEEEEE
Q 011382 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVMKLNVEINCILIIF 476 (487)
Q Consensus 418 ~~~~VvLkNMf~p~el~~Dp~~~~ei~EDVreEC~KfG~V~~V~V~~~~p~Gvv~V~f~ 476 (487)
+..+|++......++ +...+..++..+|.+.|+.||.|..|+|.... ++|.|.
T Consensus 14 pD~Tv~V~~~~~~~~--~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~ 66 (95)
T 1ufw_A 14 LDATVVVNLQSPTLE--EKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFA 66 (95)
T ss_dssp TTCEEEEEESSCCHH--HHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECS
T ss_pred CCCeEEEEecCCccc--ccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEc
Confidence 345787777643211 11223456788899999999999999996443 788873
No 394
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=67.67 E-value=10 Score=40.32 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=44.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCCHHHHHHHHHhcCC
Q 011382 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG 360 (487)
Q Consensus 288 nt~VyV~nLP~diTeeeL~e~Fsk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~~esa~~Ai~~Ldg 360 (487)
..-++|+ +|..+...+|.++|+.||.+. |+.+.| ..|||.|.+++.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~---------V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ---------ISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE---------EEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE---------EEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3455665 999999999999999999665 665443 2599999999999999988853
No 395
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=40.86 E-value=24 Score=24.50 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=21.2
Q ss_pred CCCCCCCCceeEEcCCCCeEEeecccc
Q 011382 167 GVPASPEGEDEFTDDDGTRYKWDRGLR 193 (487)
Q Consensus 167 ~~~~~~~~~~~~~~~DGt~y~wD~~~k 193 (487)
+|...|.|=....|.+|..|.|+...+
T Consensus 5 ~~~~LP~gW~~~~~~~Gr~YY~n~~T~ 31 (43)
T 1ymz_A 5 RSMPLPPGWERRTDVEGKVYYFNVRTL 31 (43)
T ss_dssp --CCCCSSEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCCCCEEEECCCCCEEEEECCCC
Confidence 455678897788889999999998765
No 396
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=37.82 E-value=40 Score=22.85 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.3
Q ss_pred CCCCCceeEEcCCCCeEEeecccc
Q 011382 170 ASPEGEDEFTDDDGTRYKWDRGLR 193 (487)
Q Consensus 170 ~~~~~~~~~~~~DGt~y~wD~~~k 193 (487)
..|.|=....|.+|.+|.+|...+
T Consensus 6 ~LP~gWe~~~d~~G~~YY~n~~t~ 29 (39)
T 2kyk_A 6 PLPPGWERRVDNMGRIYYVDHFTR 29 (39)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSC
T ss_pred CCCCCcEEEEcCCCCEEEEECCCC
Confidence 468888888889999999998764
No 397
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=30.56 E-value=54 Score=21.67 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.0
Q ss_pred CCCCCceeEEcCCCCeEEeecccc
Q 011382 170 ASPEGEDEFTDDDGTRYKWDRGLR 193 (487)
Q Consensus 170 ~~~~~~~~~~~~DGt~y~wD~~~k 193 (487)
..|.|=....|.+|..|.+|...+
T Consensus 4 ~LP~GWe~~~d~~G~~Yy~n~~t~ 27 (36)
T 1wr3_A 4 PLPPGWEEKVDNLGRTYYVNHNNR 27 (36)
T ss_dssp CSCTTEEEEECSSSCEEEEETTTC
T ss_pred CCCCCCEEEECCCCCEEEEECCCC
Confidence 458887788889999999998764
No 398
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=29.09 E-value=56 Score=21.61 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=19.8
Q ss_pred CCCCCceeEEcCCCCeEEeecccc
Q 011382 170 ASPEGEDEFTDDDGTRYKWDRGLR 193 (487)
Q Consensus 170 ~~~~~~~~~~~~DGt~y~wD~~~k 193 (487)
..|.|=.++.+.+|..|.++...+
T Consensus 3 ~LP~gW~~~~~~~G~~Yy~n~~t~ 26 (37)
T 1e0m_A 3 GLPPGWDEYKTHNGKTYYYNHNTK 26 (37)
T ss_dssp CSCTTEEEEECSSCCEEEEETTTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCC
Confidence 357887788889999999998754
No 399
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=27.32 E-value=67 Score=21.70 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=20.9
Q ss_pred CCCCCceeEEcCCCCeEEeeccccc
Q 011382 170 ASPEGEDEFTDDDGTRYKWDRGLRA 194 (487)
Q Consensus 170 ~~~~~~~~~~~~DGt~y~wD~~~k~ 194 (487)
..|.|=.+..|.+|..|.|+...+.
T Consensus 7 ~LP~gW~~~~d~~Gr~YY~n~~T~~ 31 (40)
T 2ysh_A 7 GLPPGWQSYLSPQGRRYYVNTTTNE 31 (40)
T ss_dssp SCCTTCEEEECTTSCEEEECSSSCC
T ss_pred CCCCCceEEECCCCCEEEEECCCCC
Confidence 4688888889999999999987653
No 400
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=25.68 E-value=87 Score=22.60 Aligned_cols=30 Identities=23% Similarity=0.123 Sum_probs=23.2
Q ss_pred CCCCCCCCCCCceeEEcCCCCeEEeecccc
Q 011382 164 DHDGVPASPEGEDEFTDDDGTRYKWDRGLR 193 (487)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~DGt~y~wD~~~k 193 (487)
+.+.....|.|=....|.+|.+|.+|...|
T Consensus 7 ~~~~~~~LP~GWe~~~d~~Gr~YYvnh~t~ 36 (49)
T 2zaj_A 7 GLDSELELPAGWEKIEDPVYGIYYVDHINR 36 (49)
T ss_dssp CCCCSSCCCTTEEEEEETTTEEEEEETTTT
T ss_pred ccCCCCCCCcCceEEEcCCCCEEEEeCCCC
Confidence 344455678897777889999999998775
No 401
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.45 E-value=1e+02 Score=23.25 Aligned_cols=30 Identities=23% Similarity=0.118 Sum_probs=23.4
Q ss_pred CCCCCCCCCCceeEEcCCCCeEEeeccccc
Q 011382 165 HDGVPASPEGEDEFTDDDGTRYKWDRGLRA 194 (487)
Q Consensus 165 ~~~~~~~~~~~~~~~~~DGt~y~wD~~~k~ 194 (487)
.+.....|.|=....|.+|.+|.+|...|.
T Consensus 8 ~d~~~~LP~GWE~~~d~~Gr~YYvnh~tk~ 37 (60)
T 2yse_A 8 LDSELELPAGWEKIEDPVYGIYYVDHINRK 37 (60)
T ss_dssp CCCCSSCCSSEEEEECSSSCEEEEETTTTE
T ss_pred cCCCCCCCCCcEEEECCCCCEEEEeCCCCC
Confidence 344456788977778899999999988763
No 402
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=24.60 E-value=40 Score=35.54 Aligned_cols=22 Identities=14% Similarity=0.227 Sum_probs=18.7
Q ss_pred HHHHHHHhccCcceEEEEEecC
Q 011382 444 EADVQEECVKIGPVDSVKVMKL 465 (487)
Q Consensus 444 ~EDVreEC~KfG~V~~V~V~~~ 465 (487)
..+|.+-|++||+|.+|..|..
T Consensus 66 ~~~l~~y~~~~g~i~~~~~~~~ 87 (464)
T 3pq1_A 66 ENKFLKYLSQFGPINNHFFYES 87 (464)
T ss_dssp -CHHHHHHGGGSCCCCEEEECS
T ss_pred HHHHHHHHHhcCCcceEEEEcc
Confidence 4578999999999999999864
No 403
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.59 E-value=80 Score=21.84 Aligned_cols=24 Identities=25% Similarity=0.341 Sum_probs=20.4
Q ss_pred CCCCCceeEEcCCCCeEEeecccc
Q 011382 170 ASPEGEDEFTDDDGTRYKWDRGLR 193 (487)
Q Consensus 170 ~~~~~~~~~~~~DGt~y~wD~~~k 193 (487)
..|.|=...+|.+|.+|.+|...+
T Consensus 7 ~LP~GWe~~~d~~Gr~YY~n~~t~ 30 (43)
T 2dmv_A 7 GLPPGWEQRVDQHGRVYYVDHVEK 30 (43)
T ss_dssp SCCTTEEEEECTTSCEEEEETTTC
T ss_pred CCCCCceEEECCCCCEEEEECCCC
Confidence 468888888899999999998765
No 404
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=23.47 E-value=81 Score=20.57 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=19.9
Q ss_pred CCCCCceeEEcCCCCeEEeecccc
Q 011382 170 ASPEGEDEFTDDDGTRYKWDRGLR 193 (487)
Q Consensus 170 ~~~~~~~~~~~~DGt~y~wD~~~k 193 (487)
..|.|=....|.+|..|.++...+
T Consensus 4 ~LP~gWe~~~d~~g~~Yy~n~~t~ 27 (36)
T 1wr4_A 4 GLPSGWEERKDAKGRTYYVNHNNR 27 (36)
T ss_dssp TCCTTEEEEECSSSCEEEEETTTT
T ss_pred CCCCCCEEEECCCCCEEEEECCCC
Confidence 357888888889999999998764
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=20.44 E-value=1.7e+02 Score=26.68 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=41.7
Q ss_pred EEEEcCCCCC---------CCHHHHHHHh--hcCCccccCCCCCCCeEEEEecCCCCCccceEEEEeCC-HHHHHHHHHh
Q 011382 290 HVYVTGLPDD---------VTVEEMVEVF--SKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLK-EPSVALATQL 357 (487)
Q Consensus 290 ~VyV~nLP~d---------iTeeeL~e~F--sk~G~I~~d~~t~~p~ikl~~Dk~tG~~KG~AfV~F~~-~esa~~Ai~~ 357 (487)
.+.|-|+|.. ....+|++.| +.|..++ |+...++ .-+.|+|+|.|.+ -.-...|+.+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k---------v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR---------VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE---------EEEEECS--SBEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce---------eEecccC--CCCceeEEEEecCChHHHHHHHHH
Confidence 4677788861 4457899977 9999987 4444543 3478999999977 3344555543
Q ss_pred cCCccc
Q 011382 358 LDGTPF 363 (487)
Q Consensus 358 Ldg~~~ 363 (487)
=+.+..
T Consensus 83 ek~Fe~ 88 (172)
T 4e8u_A 83 DKAYTV 88 (172)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 406
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=20.13 E-value=1.2e+02 Score=20.62 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.1
Q ss_pred CCCCCceeEEcCCCCeEEeecccc
Q 011382 170 ASPEGEDEFTDDDGTRYKWDRGLR 193 (487)
Q Consensus 170 ~~~~~~~~~~~~DGt~y~wD~~~k 193 (487)
..|.|=...+|.+|.+|.+|...+
T Consensus 8 ~LP~gWe~~~~~~G~~Yy~n~~t~ 31 (41)
T 1wr7_A 8 FLPPGWEMRIAPNGRPFFIDHNTK 31 (41)
T ss_dssp SSCTTEEEEECTTSCEEEEETTTT
T ss_pred CCCCCcEEEEcCCCCEEEEECCCC
Confidence 468887788889999999998765
Done!