BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011383
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 115/234 (49%), Gaps = 13/234 (5%)
Query: 161 DVILLKFLRAREFKVNDALEMLKNTLQWRKGNKIDSIL-----DEDLEVDLSSAAYMNGV 215
D LL+FLRAR+F V A EM +N +WRK D+IL DE + Y +
Sbjct: 52 DSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKT 111
Query: 216 DREGHPVCYNIYGVFESDELYQKTFGTEEKRGQFLRWRLRLMEQGIQKLDFKPGG--ISS 273
D++G PV + G E+ + T +EE+ + L W + Q + G + +
Sbjct: 112 DKDGRPVYFEELGAVNLHEMNKVT--SEERMLKNLVWEYESVVQYRLPACSRAAGHLVET 169
Query: 274 LLQINDLKNAPVLAKKELRVATKQAVDLLQNNYPEFVARNIIINAPFWYYALNALISPFL 333
I DLK + + + ++A + QN YPE + + IINAPF + L PFL
Sbjct: 170 SCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFL 229
Query: 334 TQRTKSKFVVARPAKVTETLLKYIPAEELPVQYGGFKRENDFEFSKEGGAVSEI 387
T SK + + E LLK IPAE LPV++GG +++ + SK G +S+I
Sbjct: 230 DPVTVSKIFILGSSYQKE-LLKQIPAENLPVKFGG---KSEVDESKGGLYLSDI 279
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 154/356 (43%), Gaps = 45/356 (12%)
Query: 149 VPLLPSKGAEGIDVILLKFLRAREFKVNDALEMLKNTLQWRKGNKIDSILD----EDLEV 204
+P LP+ D LL++LRAR F + + ML+ +++RK ID+I+ E ++
Sbjct: 27 LPALPNPD----DYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQ 82
Query: 205 DLSSAAYMNGVDREGHPVCYNIYGVFESDELYQKTFGTEEKRGQFLRWRLRLMEQGIQKL 264
LS M G D +G PV Y+I G ++ L F ++ LR ++R E +Q+
Sbjct: 83 YLSGG--MCGYDLDGCPVWYDIIGPLDAKGL---LFSASKQ--DLLRTKMRECELLLQEC 135
Query: 265 DFKPGGISSLLQ-INDLKNAPVLAKKELRVATKQA----VDLLQNNYPEFVARNIIINAP 319
+ + ++ I + + L K L +A + + + NYPE + R ++ AP
Sbjct: 136 AHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAP 195
Query: 320 FWYYALNALISPFLTQRTKSKFVVARPAKVTETLLKYIPAEELPVQYGGFKRENDFEFSK 379
+ LI PFL++ T+ K +V A E LLK+I +++PV+YGG + D
Sbjct: 196 KLFPVAYNLIKPFLSEDTRKKIMVLG-ANWKEVLLKHISPDQVPVEYGGTMTDPDGNPKC 254
Query: 380 E-----GGAV---------------SEITLKAGSTETIEIQAPEIGTTITWDLTVLGWEV 419
+ GG + + + GS+ +E + G + W G +V
Sbjct: 255 KSKINYGGDIPRKYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADV 314
Query: 420 SY----KEEFVPTDEGSYTIIVQKGKKMGSHEGPIRNTFKNNEAGKLVLTIDNASS 471
+ K++ V ++ SH P T ++ G VL DN S
Sbjct: 315 GFGIFLKKKMGERQRAGEMTEVLPNQRYNSHLVPEDGTLTCSDPGIYVLRFDNTYS 370
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 153/356 (42%), Gaps = 45/356 (12%)
Query: 149 VPLLPSKGAEGIDVILLKFLRAREFKVNDALEMLKNTLQWRKGNKIDSILD----EDLEV 204
+P LP+ D LL++LRAR F + + ML+ +++RK ID+I+ E ++
Sbjct: 27 LPALPNPD----DYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQ 82
Query: 205 DLSSAAYMNGVDREGHPVCYNIYGVFESDELYQKTFGTEEKRGQFLRWRLRLMEQGIQKL 264
LS M G D +G PV Y+I G ++ L F ++ LR ++R E +Q+
Sbjct: 83 YLSGG--MCGYDLDGCPVWYDIIGPLDAKGL---LFSASKQ--DLLRTKMRECELLLQEC 135
Query: 265 DFKPGGISSLLQ-INDLKNAPVLAKKELRVATKQA----VDLLQNNYPEFVARNIIINAP 319
+ + ++ I + + L K L +A + + + NYPE + R ++ AP
Sbjct: 136 AHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAP 195
Query: 320 FWYYALNALISPFLTQRTKSKFVVARPAKVTETLLKYIPAEELPVQYGGFKRENDFEFSK 379
+ LI PFL++ T+ K +V A E LLK+I +++PV+YGG + D
Sbjct: 196 KLFPVAYNLIKPFLSEDTRKKIMVLG-ANWKEVLLKHISPDQVPVEYGGTMTDPDGNPKC 254
Query: 380 E-----GGAV---------------SEITLKAGSTETIEIQAPEIGTTITWDLTVLGWEV 419
+ GG + + + GS+ +E + G + W G +V
Sbjct: 255 KSKINYGGDIPRKYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADV 314
Query: 420 SY----KEEFVPTDEGSYTIIVQKGKKMGSHEGPIRNTFKNNEAGKLVLTIDNASS 471
+ K + V ++ SH P T ++ G VL DN S
Sbjct: 315 GFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTLTCSDPGIYVLRFDNTYS 370
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 16/221 (7%)
Query: 161 DVILLKFLRAREFKVNDALEMLKNTLQWRKGNKIDSILD-----------EDLEVDLSSA 209
D LL+FLRAR+F +N ++EM T +WR+ ++I++ E +++
Sbjct: 61 DSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYP 120
Query: 210 AYMNGVDREGHPVCYNIYGVFESDELYQKTFGTEEKRGQFLRWRLRLMEQGIQKLDFKPG 269
Y + VD++G P+ + G ++Y+ T + R + L + + G
Sbjct: 121 QYYHHVDKDGRPLYFEELGGINLKKMYKITTEKQMLRNLVKEYEL-FATYRVPACSRRAG 179
Query: 270 G-ISSLLQINDLKNAPVLAKKELRVATKQAVDLLQNNYPEFVARNIIINAPFWYYALNAL 328
I + + DLK + + K D+ QN YPE + + II++PF + + +
Sbjct: 180 YLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKM 239
Query: 329 ISPFLTQRTKSK-FVVARPAKVTETLLKYIPAEELPVQYGG 368
+ PFL T SK F++ K + LLK IP E LPV+YGG
Sbjct: 240 VKPFLDPVTVSKIFILGSSYK--KELLKQIPIENLPVKYGG 278
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 16/221 (7%)
Query: 161 DVILLKFLRAREFKVNDALEMLKNTLQWRKGNKIDSILD-----------EDLEVDLSSA 209
D LL+FLRAR+F +N ++EM T +WR+ ++I++ E +++
Sbjct: 61 DSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYP 120
Query: 210 AYMNGVDREGHPVCYNIYGVFESDELYQKTFGTEEKRGQFLRWRLRLMEQGIQKLDFKPG 269
Y + VD++G P+ + G ++Y+ T + R + L + + G
Sbjct: 121 QYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYEL-FATYRVPACSRRAG 179
Query: 270 G-ISSLLQINDLKNAPVLAKKELRVATKQAVDLLQNNYPEFVARNIIINAPFWYYALNAL 328
I + + DLK + + K D+ QN YPE + + II++PF + + +
Sbjct: 180 YLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKM 239
Query: 329 ISPFLTQRTKSK-FVVARPAKVTETLLKYIPAEELPVQYGG 368
+ PFL T SK F++ K + LLK IP E LPV+YGG
Sbjct: 240 VKPFLDPVTVSKIFILGSSYK--KELLKQIPIENLPVKYGG 278
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 150/357 (42%), Gaps = 47/357 (13%)
Query: 149 VPLLPSKGAEGIDVILLKFLRAREFKVNDALEMLKNTLQWRKGNKIDSILD----EDLEV 204
+P LP+ D LL++LRAR F + + L+ +++RK ID+I+ E ++
Sbjct: 27 LPALPNPD----DYFLLRWLRARSFDLQKSEAXLRKHVEFRKQKDIDNIISWQPPEVIQQ 82
Query: 205 DLSSAAYMNGVDREGHPVCYNIYGVFESDELYQKTFGTEEKRGQFLRWRLRLMEQGIQKL 264
LS G D +G PV Y+I G ++ L F ++ LR + R E +Q+
Sbjct: 83 YLSGGX--CGYDLDGCPVWYDIIGPLDAKGL---LFSASKQ--DLLRTKXRECELLLQEC 135
Query: 265 DFKPGGISSLLQ-INDLKNAPVLAKKELRVATKQA----VDLLQNNYPEFVARNIIINAP 319
+ + ++ I + + L K L +A + + NYPE + R ++ AP
Sbjct: 136 AHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCXFEENYPETLKRLFVVKAP 195
Query: 320 FWYYALNALISPFLTQRTKSKFVVARPAKVTETLLKYIPAEELPVQYGGFKRENDFEFSK 379
+ LI PFL++ T+ K V A E LLK+I +++PV+YGG + D
Sbjct: 196 KLFPVAYNLIKPFLSEDTRKKIXVLG-ANWKEVLLKHISPDQVPVEYGGTXTDPDGNPKC 254
Query: 380 E-----GGAV---------------SEITLKAGSTETIEIQAPEIGTTITWDLTVLGWEV 419
+ GG + + + GS+ +E + G + W G +V
Sbjct: 255 KSKINYGGDIPRKYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFXSDGADV 314
Query: 420 SYKEEFVPTDEGSYTII-----VQKGKKMGSHEGPIRNTFKNNEAGKLVLTIDNASS 471
+ F+ T G V ++ SH P T ++ G VL DN S
Sbjct: 315 GFG-IFLKTKXGERQRAGEXTEVLPNQRYNSHLVPEDGTLTCSDPGIYVLRFDNTYS 370
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 40/230 (17%)
Query: 164 LLKFLRAREFKVNDALEMLKNTLQWRKGNKIDSILDED---LEVDL------SSAAYMNG 214
L++LRA ++ + D ++ + TL WR+ I + +E + DL S + G
Sbjct: 90 FLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILG 149
Query: 215 VDREGHPVCYNIYGVFESDELYQKTFGTEEKRGQFLRWRLRLMEQGIQKLDFKPGGISSL 274
+ + P+ Y G ++ T ++ Q L + L + +DF P G SL
Sbjct: 150 YENDARPILYLKPG--------RQNTKTSHRQVQHLVFMLERV------IDFMPAGQDSL 195
Query: 275 LQINDLKNAPVLAK-------KELRVATKQAVDLLQNNYPEFVARNIIINAPFWYYALNA 327
+ D K+ P + K + V K+ + +LQ +YPE + + ++ N P+ +
Sbjct: 196 ALLIDFKDYPDVPKVPGNSKIPPIGVG-KEVLHILQTHYPERLGKALLTNIPWLAWTFLK 254
Query: 328 LISPFLTQRTKSKFVVARPAKVTETLLKYIPAEELPVQYGG---FKREND 374
LI PF+ T+ K V P +KY+P EL YGG FK +D
Sbjct: 255 LIHPFIDPLTREKLVFDEP------FVKYVPKNELDSLYGGDLKFKYNHD 298
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 30/230 (13%)
Query: 148 GVPLLPSKGAEGIDVILLKFLRAREFKVNDALEMLKNTLQWR-KGNKIDSILDEDLEVDL 206
GVPL P D LL+FLRAR+F ++ A +LKN +WR + +I + L + L
Sbjct: 39 GVPLAPLPLT---DSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGL 95
Query: 207 SSAAYMNGVDREGHPVCYN--IYGVFESDELYQKTFGTEEKRGQFLRWRLRLMEQGIQKL 264
A Y +GV R P IY + D K F + R L E +Q++
Sbjct: 96 LKAGY-HGVLRSRDPTGSKVLIYRIAHWDP---KVFTAYD----VFRVSLITSELIVQEV 147
Query: 265 DFKPGGISSLLQI------NDLKNAPVLAKKELRVATKQAVDLLQNNYPEFVARNIIINA 318
+ + GI ++ + + + P +AKK V T +++P V +IN
Sbjct: 148 ETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLT--------DSFPLKVRGIHLINE 199
Query: 319 PFWYYALNALISPFLTQRTKSKFVVARPAKVTETLLKYIPAEELPVQYGG 368
P ++A+ ++I PFLT++ K + + ++LL++ P + LP++YGG
Sbjct: 200 PVIFHAVFSMIKPFLTEKIKER-IHMHGNNYKQSLLQHFP-DILPLEYGG 247
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 30/230 (13%)
Query: 148 GVPLLPSKGAEGIDVILLKFLRAREFKVNDALEMLKNTLQWR-KGNKIDSILDEDLEVDL 206
GVPL P D LL+FLRAR+F ++ A +LKN +WR + +I + L + L
Sbjct: 23 GVPLAPLPLT---DSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGL 79
Query: 207 SSAAYMNGVDREGHPVCYN--IYGVFESDELYQKTFGTEEKRGQFLRWRLRLMEQGIQKL 264
A Y +GV R P IY + D K F + R L E +Q++
Sbjct: 80 LKAGY-HGVLRSRDPTGSKVLIYRIAHWDP---KVFTAYD----VFRVSLITSELIVQEV 131
Query: 265 DFKPGGISSLLQI------NDLKNAPVLAKKELRVATKQAVDLLQNNYPEFVARNIIINA 318
+ + GI ++ + + + P +AKK V T +++P V +IN
Sbjct: 132 ETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLT--------DSFPLKVRGIHLINE 183
Query: 319 PFWYYALNALISPFLTQRTKSKFVVARPAKVTETLLKYIPAEELPVQYGG 368
P ++A+ + I PFLT++ K + + ++LL++ P + LP++YGG
Sbjct: 184 PVIFHAVFSXIKPFLTEKIKER-IHXHGNNYKQSLLQHFP-DILPLEYGG 231
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 86/187 (45%), Gaps = 19/187 (10%)
Query: 163 ILLKFLRAREFKVNDALEMLKNTLQWR--KGNKIDSILDEDLEVDLSSA--AYMNGVDRE 218
L+F+RAR+F V A E+L+ + +R DS+ E + + + ++ D+
Sbjct: 94 FFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKY 153
Query: 219 GHPVC-YNIYGVFESDELYQKTFGTEEKRGQFLRWRLRLMEQGIQKLDFKPGGISSLLQI 277
G V +NI ++S E+ TF + L+ ++E+ ++ + + I+ I
Sbjct: 154 GRVVMLFNIEN-WQSQEI---TF------DEILQAYCFILEKLLENEETQ---INGFCII 200
Query: 278 NDLKNAPVLAKKELRVAT-KQAVDLLQNNYPEFVARNIIINAPFWYYALNALISPFLTQR 336
+ K + LR + ++ VD+LQ+++P I+ P+++ ++ PFL +
Sbjct: 201 ENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSK 260
Query: 337 TKSKFVV 343
+ V
Sbjct: 261 LLERVFV 267
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 85/187 (45%), Gaps = 19/187 (10%)
Query: 163 ILLKFLRAREFKVNDALEMLKNTLQWR--KGNKIDSILDEDLEVDLSSA--AYMNGVDRE 218
L+F+RAR+F V A E+L+ + +R DS+ E + + + ++ D+
Sbjct: 94 FFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKY 153
Query: 219 GHPV-CYNIYGVFESDELYQKTFGTEEKRGQFLRWRLRLMEQGIQKLDFKPGGISSLLQI 277
G V +NI ++S E+ TF + L+ ++E+ ++ + + I+ I
Sbjct: 154 GRVVXLFNIEN-WQSQEI---TF------DEILQAYCFILEKLLENEETQ---INGFCII 200
Query: 278 NDLKNAPVLAKKELRVAT-KQAVDLLQNNYPEFVARNIIINAPFWYYALNALISPFLTQR 336
+ K LR + ++ VD LQ+++P + I+ P+++ ++ PFL +
Sbjct: 201 ENFKGFTXQQAASLRTSDLRKXVDXLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSK 260
Query: 337 TKSKFVV 343
+ V
Sbjct: 261 LLERVFV 267
>pdb|1X8H|A Chain A, The Mono-Zinc Carbapenemase Cpha (N220g Mutant) Shows A
Zn(Ii)- Nh2 Arg Coordination
Length = 228
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 293 VATKQAVDLLQNNYPEFVA--RNIIINAPFWYYALNALI--SPFLTQRTKSKFVVARPAK 348
V+T+Q DL+++++ E VA R + P L ++ F Q K + A PA
Sbjct: 88 VSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRAFYAGPAH 147
Query: 349 VTETLLKYIPAEELPVQYGG 368
+ + Y P E+ V YGG
Sbjct: 148 TPDGIFVYFPDEQ--VLYGG 165
>pdb|1X8I|A Chain A, Crystal Structure Of The Zinc Carbapenemase Cpha In
Complex With The Antibiotic Biapenem
pdb|3FAI|A Chain A, The Di Zinc Carbapenemase Cpha N220g Mutant
pdb|3IOF|A Chain A, Crystal Structure Of Cpha N220g Mutant With Inhibitor 10a
pdb|3IOG|A Chain A, Crystal Structure Of Cpha N220g Mutant With Inhibitor 18
Length = 227
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 293 VATKQAVDLLQNNYPEFVA--RNIIINAPFWYYALNALI--SPFLTQRTKSKFVVARPAK 348
V+T+Q DL+++++ E VA R + P L ++ F Q K + A PA
Sbjct: 88 VSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRAFYAGPAH 147
Query: 349 VTETLLKYIPAEELPVQYGG 368
+ + Y P E+ V YGG
Sbjct: 148 TPDGIFVYFPDEQ--VLYGG 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,994,129
Number of Sequences: 62578
Number of extensions: 493492
Number of successful extensions: 916
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 18
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)