Query 011383
Match_columns 487
No_of_seqs 315 out of 1439
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:00:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 1.3E-68 4.4E-73 559.9 37.4 321 159-486 33-387 (403)
2 3q8g_A CRAL-TRIO domain-contai 100.0 6E-44 2.1E-48 362.5 21.2 211 158-374 58-284 (320)
3 1aua_A Phosphatidylinositol tr 100.0 8.3E-44 2.8E-48 357.2 20.9 211 158-374 49-269 (296)
4 1r5l_A Alpha-TTP, protein (alp 100.0 9.9E-42 3.4E-46 335.4 19.4 201 158-372 30-235 (262)
5 3hx3_A Retinaldehyde-binding p 100.0 2.2E-40 7.4E-45 335.8 17.1 223 138-374 59-296 (316)
6 3pg7_A Neurofibromin; SEC lipi 99.0 9.5E-10 3.3E-14 107.6 8.8 133 208-362 11-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.8 7.6E-09 2.6E-13 102.9 6.9 133 208-362 30-163 (290)
8 2cio_B Inhibitor of cysteine p 54.4 94 0.0032 25.9 10.7 83 385-471 13-102 (121)
9 2wnv_A C1Q chain A, complement 52.8 8.1 0.00028 33.0 2.9 25 444-468 30-54 (134)
10 2wnv_B C1Q chain B, complement 52.1 8.6 0.00029 33.0 2.9 24 444-467 33-56 (136)
11 4g9s_B Inhibitor of G-type lys 51.6 96 0.0033 25.2 9.4 33 451-483 74-109 (111)
12 2wnv_C C1Q chain C, complement 51.6 8.8 0.0003 32.6 2.9 23 445-467 35-57 (131)
13 3jqw_A COLH protein, collagena 50.7 1.1E+02 0.0037 25.6 10.0 78 384-484 40-117 (121)
14 2ka3_A Emilin-1; C1Q-like doma 48.0 11 0.00036 33.6 2.9 24 444-467 43-66 (162)
15 1wgl_A TOLL-interacting protei 43.1 25 0.00084 25.8 3.8 26 159-184 23-48 (59)
16 1gr3_A Collagen X; extracellul 41.1 16 0.00053 32.4 2.9 24 445-468 60-83 (160)
17 2xr4_A Lectin; sugar binding p 40.8 1.4E+02 0.0047 24.8 8.2 88 333-428 9-98 (116)
18 2h7w_A Chagasin; beta-strands, 40.8 1.7E+02 0.0057 24.8 9.5 75 385-471 33-113 (131)
19 1o91_A Collagen alpha 1(VIII) 36.8 19 0.00064 32.5 2.7 25 444-468 77-101 (178)
20 2q3l_A Uncharacterized protein 34.1 94 0.0032 25.8 6.7 96 216-336 16-111 (126)
21 3m86_A Amoebiasin-2; cysteine 34.1 1.9E+02 0.0065 23.5 10.2 86 385-482 16-110 (111)
22 1nqj_A Class 1 collagenase; be 33.3 2.1E+02 0.0072 23.8 8.9 32 449-484 88-119 (119)
23 2di0_A Activating signal coint 33.1 41 0.0014 25.7 3.7 30 151-184 23-52 (71)
24 1ufz_A Hypothetical protein BA 31.9 55 0.0019 25.7 4.3 30 156-185 46-75 (83)
25 4f3j_A Complement C1Q tumor ne 30.0 30 0.001 29.8 2.9 24 444-467 32-55 (148)
26 2lu7_A Obscurin-like protein 1 29.5 97 0.0033 23.3 5.6 29 384-412 3-31 (84)
27 1q02_A Sequestosome 1; helical 26.9 51 0.0018 23.5 3.0 24 160-183 25-48 (52)
28 1otr_A Protein CUE2; protein-p 24.6 76 0.0026 22.3 3.6 27 159-185 18-44 (49)
29 1v92_A NSFL1 cofactor P47; 3-h 24.5 53 0.0018 22.1 2.8 23 160-182 19-41 (46)
30 4dzg_A PLIG; lysozyme inhibito 23.9 69 0.0024 26.4 3.9 30 454-483 80-112 (114)
31 1z96_A DNA-damage, UBA-domain 23.7 80 0.0027 20.3 3.5 21 162-182 19-39 (40)
32 2dah_A Ubiquilin-3; UBA domain 22.7 94 0.0032 22.1 3.9 26 160-185 23-48 (54)
33 3ct6_A PTS-dependent dihydroxy 22.6 97 0.0033 26.2 4.7 42 272-328 59-100 (131)
34 2dna_A Unnamed protein product 22.4 78 0.0027 23.8 3.5 37 140-185 22-58 (67)
35 2dhy_A CUE domain-containing p 22.0 88 0.003 23.5 3.7 27 159-185 32-58 (67)
36 2dal_A Protein KIAA0794; FAS a 21.4 87 0.003 22.8 3.6 24 160-183 29-52 (62)
37 1wr1_B Ubiquitin-like protein 20.5 88 0.003 22.7 3.4 25 160-184 31-55 (58)
38 4dou_A Adiponectin; single-cha 20.5 55 0.0019 33.7 3.1 23 447-469 198-220 (442)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=1.3e-68 Score=559.95 Aligned_cols=321 Identities=25% Similarity=0.396 Sum_probs=277.7
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCCCcccchhhhhhh--cceeecccCCCCCeEEEEeccccCchhhh
Q 011383 159 GIDVILLKFLRAREFKVNDALEMLKNTLQWRKGNKIDSILDEDLEVDLS--SAAYMNGVDREGHPVCYNIYGVFESDELY 236 (487)
Q Consensus 159 ~~D~~LLRFLrAr~fdv~~A~~~L~~~l~WRk~~~id~i~~~~~~~el~--~~~~~~G~Dk~GrPV~~~~~g~~d~~~l~ 236 (487)
.+|.+||||||||+||+++|.+||+++++||+.++++.+.+...+..+. ...+++|+|++||||+|+++|++|+++++
T Consensus 33 ~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~ 112 (403)
T 1olm_A 33 PDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLL 112 (403)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSCCCHHHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHH
T ss_pred CChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHhCCceeeccCCCcCEEEEEecCCCChHHhh
Confidence 6899999999999999999999999999999999999887522222232 23457899999999999999999999876
Q ss_pred hhhcCChhhHHHHHHHHHHHHHHHHHhhcCC----CCCeeeeEEEEeCCCCCccchhh-HHHHHHHHHHHhccccccccc
Q 011383 237 QKTFGTEEKRGQFLRWRLRLMEQGIQKLDFK----PGGISSLLQINDLKNAPVLAKKE-LRVATKQAVDLLQNNYPEFVA 311 (487)
Q Consensus 237 ~~~~~~e~~~~~~lr~~i~~~E~~l~~l~~~----~~~i~~iv~IiDl~g~s~~~~~~-l~~~~k~ii~llq~~YPE~L~ 311 (487)
+. .+.++++|++++++|.+++.+..+ +.++.++++|+||+|+++.++.. ...+++.++.++|+|||+||+
T Consensus 113 ~~-----~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~ 187 (403)
T 1olm_A 113 FS-----ASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLK 187 (403)
T ss_dssp TT-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred cc-----CCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhC
Confidence 54 246899999999999999876543 23578999999999999766543 357889999999999999999
Q ss_pred eeEEEeCchHHHHHHHHhcccCChhhhcceEEeCCccchHHHhccCCCCCcccccCCcccC--CCCccccC---CC----
Q 011383 312 RNIIINAPFWYYALNALISPFLTQRTKSKFVVARPAKVTETLLKYIPAEELPVQYGGFKRE--NDFEFSKE---GG---- 382 (487)
Q Consensus 312 ~i~IINaP~~f~~lw~ivkpfL~~~Tr~KI~~~~~~~~~e~L~k~Id~e~LP~~yGG~~~~--~d~~~~~~---~~---- 382 (487)
++||||+||+|.++|++++|||+++|++||+|+++ ++.+.|.++||+++||.+|||++.+ +|+.|... +|
T Consensus 188 ~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~I~~~~LP~~yGG~~~~~~~~~~c~~~i~~gg~vp~ 266 (403)
T 1olm_A 188 RLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPR 266 (403)
T ss_dssp EEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCGGGSBGGGTSSBCCTTCCTTCTTTCBCCCCCCG
T ss_pred eEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEECh-hHHHHHHhhcChhhCchhhCCCcCCCCCCcccccccccCCCCCc
Confidence 99999999999999999999999999999999986 7888999999999999999999987 45666542 11
Q ss_pred -----------ceeEEEecCCCeEEEEEeecCCCceEEEEEEEcCcceEEEEEEecCC----C-CceEEEeecceecCCC
Q 011383 383 -----------AVSEITLKAGSTETIEIQAPEIGTTITWDLTVLGWEVSYKEEFVPTD----E-GSYTIIVQKGKKMGSH 446 (487)
Q Consensus 383 -----------~~~~v~VkaG~~~~v~i~v~e~gs~l~Wef~t~~~DI~Fgi~~~~~~----~-~~~~~iv~~~~r~~~~ 446 (487)
..++++|++|++++|+|+|.++|++|.|+|+|++|||+|||+|.+.. + +.+++++ |..|+.||
T Consensus 267 ~~~~~~~~~~~~~~~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~~~DI~F~v~~~~~~~~~~~~~~~~~v~-p~~r~~~~ 345 (403)
T 1olm_A 267 KYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIFLKTKMGERQRAGEMTEVL-PNQRYNSH 345 (403)
T ss_dssp GGCSCSSCCCCCSEEEEECTTCEEEEEEEECSTTCEEEEEEEESSSCEEEEEEEC----CCCCGGGSEEEE-EEEEECTT
T ss_pred ccccCCCcccccceEEEEcCCCEEEEEEEEcCCCCEEEEEEEecCCcEEEEEEEecccccccCCCcceEEe-eeeeecCc
Confidence 12559999999999999999999999999999999999999998532 2 4566665 68899999
Q ss_pred cccccceEEcCcCcEEEEEEEcCCC--CceEEEEEEEeecCC
Q 011383 447 EGPIRNTFKNNEAGKLVLTIDNASS--KKKRVLYRYKTKNFS 486 (487)
Q Consensus 447 ~~p~~gs~~~~~~G~yvL~fDNs~S--~~Kkv~Y~~~v~~~~ 486 (487)
.++++|+|+|++||+|+|+|||+|| ++|+|.|++.+++|+
T Consensus 346 ~~~~~G~~~~~~~G~y~l~fdNs~S~~~~k~l~y~v~v~~~~ 387 (403)
T 1olm_A 346 LVPEDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLLPD 387 (403)
T ss_dssp TSCEEEEEECCSCEEEEEEEECTTCCCCSEEEEEEEEEECCC
T ss_pred cccccCEEEcCCCeEEEEEEeccccceeceEEEEEEEEeCCc
Confidence 9999999999999999999999999 899999999999876
No 2
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=6e-44 Score=362.48 Aligned_cols=211 Identities=29% Similarity=0.451 Sum_probs=181.1
Q ss_pred CCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCCCcccchhhh---------hhh--cceeecccCCCCCeEEEEe
Q 011383 158 EGIDVILLKFLRAREFKVNDALEMLKNTLQWRKGNKIDSILDEDLEV---------DLS--SAAYMNGVDREGHPVCYNI 226 (487)
Q Consensus 158 ~~~D~~LLRFLrAr~fdv~~A~~~L~~~l~WRk~~~id~i~~~~~~~---------el~--~~~~~~G~Dk~GrPV~~~~ 226 (487)
..+|.+||||||||+||+++|.+||+++++||+++++|.+..+...+ .+. ...|++|+|++||||+|++
T Consensus 58 ~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r 137 (320)
T 3q8g_A 58 RLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAE 137 (320)
T ss_dssp SCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEE
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHHHHHHhCCceecCCCCCcCEEEEEe
Confidence 36899999999999999999999999999999999999887543222 222 3467899999999999999
Q ss_pred ccccCchhhhhhhcCChhhHHHHHHHHHHHHHHHHHhh----cCC-CCCeeeeEEEEeCCCCCccchhhHHHHHHHHHHH
Q 011383 227 YGVFESDELYQKTFGTEEKRGQFLRWRLRLMEQGIQKL----DFK-PGGISSLLQINDLKNAPVLAKKELRVATKQAVDL 301 (487)
Q Consensus 227 ~g~~d~~~l~~~~~~~e~~~~~~lr~~i~~~E~~l~~l----~~~-~~~i~~iv~IiDl~g~s~~~~~~l~~~~k~ii~l 301 (487)
+|++|++++++.+ +.+++++++++.+|.+++.. ... ...++++++|+||+|+++.++.++..+++.++.+
T Consensus 138 ~g~~d~~~l~~~~-----~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~~~k~~~~~ 212 (320)
T 3q8g_A 138 LGGINLKKMYKIT-----TEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADI 212 (320)
T ss_dssp CTTCCHHHHHHHC-----CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHHHHHHHHHH
T ss_pred ccccCHHHhhccC-----CHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999887542 35889999999999987531 111 2347889999999999976655556788999999
Q ss_pred hccccccccceeEEEeCchHHHHHHHHhcccCChhhhcceEEeCCccchHHHhccCCCCCcccccCCcccCCC
Q 011383 302 LQNNYPEFVARNIIINAPFWYYALNALISPFLTQRTKSKFVVARPAKVTETLLKYIPAEELPVQYGGFKREND 374 (487)
Q Consensus 302 lq~~YPE~L~~i~IINaP~~f~~lw~ivkpfL~~~Tr~KI~~~~~~~~~e~L~k~Id~e~LP~~yGG~~~~~d 374 (487)
+|+|||+||+++||||+|++|.++|++++|||+++|++||+|+++ ++.+.|.++||+++||.+|||++.+.+
T Consensus 213 lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~~~LP~~yGG~~~~~~ 284 (320)
T 3q8g_A 213 SQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGS-SYKKELLKQIPIENLPVKYGGTSVLHN 284 (320)
T ss_dssp HHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCT-THHHHHHHHSCGGGSBGGGTSCBCCSS
T ss_pred HHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCC-CcHHHHHhhCChhhCChhhCCCCCCCC
Confidence 999999999999999999999999999999999999999999985 578999999999999999999998843
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=8.3e-44 Score=357.23 Aligned_cols=211 Identities=31% Similarity=0.425 Sum_probs=180.9
Q ss_pred CCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCCCcccchhh---hhhhc--ceeecccCCCCCeEEEEeccccCc
Q 011383 158 EGIDVILLKFLRAREFKVNDALEMLKNTLQWRKGNKIDSILDEDLE---VDLSS--AAYMNGVDREGHPVCYNIYGVFES 232 (487)
Q Consensus 158 ~~~D~~LLRFLrAr~fdv~~A~~~L~~~l~WRk~~~id~i~~~~~~---~el~~--~~~~~G~Dk~GrPV~~~~~g~~d~ 232 (487)
..+|.+||||||||+||+++|.+||+++++||+.++++.+..+... +.+.. ..+++|+|++||||+|+++|++|+
T Consensus 49 ~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~ 128 (296)
T 1aua_A 49 RLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNL 128 (296)
T ss_dssp SCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGGSCCEEEEECTTSCEEEEECGGGCCH
T ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHhCCceecccCCCCCEEEEEeeccCCh
Confidence 3679999999999999999999999999999999999887653221 22322 246889999999999999999999
Q ss_pred hhhhhhhcCChhhHHHHHHHHHHHHHHHHHhhc----C-CCCCeeeeEEEEeCCCCCccchhhHHHHHHHHHHHhccccc
Q 011383 233 DELYQKTFGTEEKRGQFLRWRLRLMEQGIQKLD----F-KPGGISSLLQINDLKNAPVLAKKELRVATKQAVDLLQNNYP 307 (487)
Q Consensus 233 ~~l~~~~~~~e~~~~~~lr~~i~~~E~~l~~l~----~-~~~~i~~iv~IiDl~g~s~~~~~~l~~~~k~ii~llq~~YP 307 (487)
++++.. .+.+++++++++.+|.+++.+. . ....++++++|+||+|+++.++..+..+++.++.++|+|||
T Consensus 129 ~~~~~~-----~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YP 203 (296)
T 1aua_A 129 HEMNKV-----TSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYP 203 (296)
T ss_dssp HHHTTT-----CCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHhhcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 887543 2468999999999999876421 1 12357899999999999976555556788999999999999
Q ss_pred cccceeEEEeCchHHHHHHHHhcccCChhhhcceEEeCCccchHHHhccCCCCCcccccCCcccCCC
Q 011383 308 EFVARNIIINAPFWYYALNALISPFLTQRTKSKFVVARPAKVTETLLKYIPAEELPVQYGGFKREND 374 (487)
Q Consensus 308 E~L~~i~IINaP~~f~~lw~ivkpfL~~~Tr~KI~~~~~~~~~e~L~k~Id~e~LP~~yGG~~~~~d 374 (487)
+||+++||||+||+|+++|++++|||+++|++||+|+++ ++.+.|.++||+++||.+|||++.+.+
T Consensus 204 erl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~~~LP~~yGG~~~~~~ 269 (296)
T 1aua_A 204 ERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGS-SYQKELLKQIPAENLPVKFGGKSEVDE 269 (296)
T ss_dssp TCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCS-CCHHHHTTTSCSSSSBGGGTSCBCCCG
T ss_pred HhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCc-ccHHHHHhhCCHhhCcHHhCCCCCCCC
Confidence 999999999999999999999999999999999999985 688999999999999999999998854
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=9.9e-42 Score=335.44 Aligned_cols=201 Identities=24% Similarity=0.369 Sum_probs=168.8
Q ss_pred CCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhCC-C-CCcccchhhhhh-hc-ceeecccCCCCCeEEEEeccccCch
Q 011383 158 EGIDVILLKFLRAREFKVNDALEMLKNTLQWRKGNK-I-DSILDEDLEVDL-SS-AAYMNGVDREGHPVCYNIYGVFESD 233 (487)
Q Consensus 158 ~~~D~~LLRFLrAr~fdv~~A~~~L~~~l~WRk~~~-i-d~i~~~~~~~el-~~-~~~~~G~Dk~GrPV~~~~~g~~d~~ 233 (487)
..+|.+||||||||+||+++|.+||+++++||+.++ + +++....+...+ .+ ..+++|+|++||||+|+++|++|++
T Consensus 30 ~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~ 109 (262)
T 1r5l_A 30 PLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPK 109 (262)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTT
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHHHcCCccCCCCcCCCCCEEEEEeccccCcc
Confidence 468999999999999999999999999999999985 2 222222222233 23 3467899999999999999999875
Q ss_pred hhhhhhcCChhhHHHHHHHHHHHHHHHHHhhcCCCCCeeeeEEEEeCCCCCccchhhH-HHHHHHHHHHhccccccccce
Q 011383 234 ELYQKTFGTEEKRGQFLRWRLRLMEQGIQKLDFKPGGISSLLQINDLKNAPVLAKKEL-RVATKQAVDLLQNNYPEFVAR 312 (487)
Q Consensus 234 ~l~~~~~~~e~~~~~~lr~~i~~~E~~l~~l~~~~~~i~~iv~IiDl~g~s~~~~~~l-~~~~k~ii~llq~~YPE~L~~ 312 (487)
.+ +..+++|+.++++|.+++.++ .++.++++|+|++|+++.++..+ ...++.++.++|+|||++|++
T Consensus 110 ~~---------~~~~~~r~~~~~~E~~~~~~~---~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~ 177 (262)
T 1r5l_A 110 VF---------TAYDVFRVSLITSELIVQEVE---TQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRG 177 (262)
T ss_dssp TS---------CHHHHHHHHHHHHHHHTTSHH---HHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEE
T ss_pred cC---------CHHHHHHHHHHHHHHHHhChh---hcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhce
Confidence 42 247889999999999876543 24577999999999996554332 467899999999999999999
Q ss_pred eEEEeCchHHHHHHHHhcccCChhhhcceEEeCCccchHHHhccCCCCCcccccCCcccC
Q 011383 313 NIIINAPFWYYALNALISPFLTQRTKSKFVVARPAKVTETLLKYIPAEELPVQYGGFKRE 372 (487)
Q Consensus 313 i~IINaP~~f~~lw~ivkpfL~~~Tr~KI~~~~~~~~~e~L~k~Id~e~LP~~yGG~~~~ 372 (487)
+||||+|++|+++|++++|||+++|++||+|+++ ++.+.|.++|+ ++||.+|||++.+
T Consensus 178 i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~-~~~~~L~~~i~-~~LP~~yGG~~~~ 235 (262)
T 1r5l_A 178 IHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGN-NYKQSLLQHFP-DILPLEYGGEEFS 235 (262)
T ss_dssp EEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCS-SCHHHHHHHST-TTSCGGGTCSSCC
T ss_pred EEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCC-CcHHHHHHHhh-hhCcHhhCCCCCC
Confidence 9999999999999999999999999999999985 67899999999 9999999999853
No 5
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=2.2e-40 Score=335.85 Aligned_cols=223 Identities=20% Similarity=0.325 Sum_probs=181.7
Q ss_pred hcchhhhhhhcCCC--CCC--------CCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhCC--CCCcccchhhhh
Q 011383 138 VEVDKDIALWGVPL--LPS--------KGAEGIDVILLKFLRAREFKVNDALEMLKNTLQWRKGNK--IDSILDEDLEVD 205 (487)
Q Consensus 138 ~~~~~~~~~wg~~l--~p~--------~~~~~~D~~LLRFLrAr~fdv~~A~~~L~~~l~WRk~~~--id~i~~~~~~~e 205 (487)
.+.++.++.|-... ++. .....+|.+||||||||+||+++|.+||+++++||+.++ .+++..+.+...
T Consensus 59 ~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~~~i~~~ 138 (316)
T 3hx3_A 59 EEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCT 138 (316)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCHHHHHHH
Confidence 34677888885432 110 012479999999999999999999999999999999986 233332333333
Q ss_pred h-hcc-eeecccCCCCCeEEEEeccccCchhhhhhhcCChhhHHHHHHHHHHHHHHHHHhhcCCCCCeeeeEEEEeCCCC
Q 011383 206 L-SSA-AYMNGVDREGHPVCYNIYGVFESDELYQKTFGTEEKRGQFLRWRLRLMEQGIQKLDFKPGGISSLLQINDLKNA 283 (487)
Q Consensus 206 l-~~~-~~~~G~Dk~GrPV~~~~~g~~d~~~l~~~~~~~e~~~~~~lr~~i~~~E~~l~~l~~~~~~i~~iv~IiDl~g~ 283 (487)
+ .+. ++++|+|++||||+|+++|++|+..+ +.++++|++++++|.++... ..++.++++|+|++|+
T Consensus 139 l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~---------~~~~~~r~~~~~lE~~l~~~---~~~v~g~v~IiD~~g~ 206 (316)
T 3hx3_A 139 IEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI---------TFDEILQAYCFILEKLLENE---ETQINGFCIIENFKGF 206 (316)
T ss_dssp HHTTSSEECSSCCTTSCEEEEEECTTCCTTTS---------CHHHHHHHHHHHHHHHTTSH---HHHHHCEEEEEECTTC
T ss_pred HHcCCccccCCCCCCCCEEEEEecccCCCCCC---------CHHHHHHHHHHHHHHHHhcc---cCCcceEEEEEECCCC
Confidence 3 233 56789999999999999999987542 35889999999999988643 3467889999999999
Q ss_pred CccchhhH-HHHHHHHHHHhccccccccceeEEEeCchHHHHHHHHhcccCChhhhcceEEeCCccchHHHhccCCCCCc
Q 011383 284 PVLAKKEL-RVATKQAVDLLQNNYPEFVARNIIINAPFWYYALNALISPFLTQRTKSKFVVARPAKVTETLLKYIPAEEL 362 (487)
Q Consensus 284 s~~~~~~l-~~~~k~ii~llq~~YPE~L~~i~IINaP~~f~~lw~ivkpfL~~~Tr~KI~~~~~~~~~e~L~k~Id~e~L 362 (487)
++.++..+ ...++.++.++|+|||++++++||||+||+|.++|++++|||+++|++||+|+++ + .+.|.++||+++|
T Consensus 207 sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~-~-~~~L~~~I~~~~L 284 (316)
T 3hx3_A 207 TMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD-D-LSGFYQEIDENIL 284 (316)
T ss_dssp CHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEET-C-CHHHHHHSCGGGS
T ss_pred CHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCC-C-HHHHHhhCCHhhC
Confidence 96554332 3578999999999999999999999999999999999999999999999999974 3 5799999999999
Q ss_pred ccccCCcccCCC
Q 011383 363 PVQYGGFKREND 374 (487)
Q Consensus 363 P~~yGG~~~~~d 374 (487)
|.+|||++++.|
T Consensus 285 P~eyGG~~~~~d 296 (316)
T 3hx3_A 285 PSDFGGTLPKYD 296 (316)
T ss_dssp BGGGTSSBCCCC
T ss_pred cHhhCCCCCCcC
Confidence 999999998644
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=98.97 E-value=9.5e-10 Score=107.64 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=104.1
Q ss_pred cceeecccCCCCCeEEEEeccccCchhhhhhhcCChhhHHHHHHHHHHHHHHHHHhhcCCCCCeeeeEEEEeCCCCCccc
Q 011383 208 SAAYMNGVDREGHPVCYNIYGVFESDELYQKTFGTEEKRGQFLRWRLRLMEQGIQKLDFKPGGISSLLQINDLKNAPVLA 287 (487)
Q Consensus 208 ~~~~~~G~Dk~GrPV~~~~~g~~d~~~l~~~~~~~e~~~~~~lr~~i~~~E~~l~~l~~~~~~i~~iv~IiDl~g~s~~~ 287 (487)
+.+|-.|.|++||||+++.+++++... .+.+.++.+.+..++.++. ....+|+|+.|++...
T Consensus 11 ~ify~~G~d~dGrpViv~~~~~l~~~~---------~D~e~Ll~~vl~tl~~~~~---------~~y~lV~d~T~~~~~n 72 (256)
T 3pg7_A 11 SIFYQAGTSKAGNPIFYYVARRFKTGQ---------INGDLLIYHVLLTLKPYYA---------KPYEIVVDLTHTGPSN 72 (256)
T ss_dssp TSEEEEEECTTSCEEEEEEGGGCCBTT---------BCHHHHHHHHHHHHTTTTT---------SCEEEEEECTTCCGGG
T ss_pred CCEEEcCcCCCCCEEEEEEeecCCCCC---------CCHHHHHHHHHHHHHHhcC---------CCeEEEEECCCCCccc
Confidence 456677999999999999999987533 2346666666666664431 2389999999998533
Q ss_pred hhhHHHHHHHHHHHhccccccccceeEEEeCchHHHHHHHH-hcccCChhhhcceEEeCCccchHHHhccCCCCCc
Q 011383 288 KKELRVATKQAVDLLQNNYPEFVARNIIINAPFWYYALNAL-ISPFLTQRTKSKFVVARPAKVTETLLKYIPAEEL 362 (487)
Q Consensus 288 ~~~l~~~~k~ii~llq~~YPE~L~~i~IINaP~~f~~lw~i-vkpfL~~~Tr~KI~~~~~~~~~e~L~k~Id~e~L 362 (487)
.. ....++.+.+++-..|...++++||+|++++|..+|.. .++|.+.+..+|++++++ ...|.++|+.++|
T Consensus 73 ~p-~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s---l~eL~~~i~~~~L 144 (256)
T 3pg7_A 73 RF-KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC---PGKLAEHIEHEQQ 144 (256)
T ss_dssp CC-CHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS---TTGGGGTSCGGGC
T ss_pred CC-cHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC---HHHHHhhcCHHHc
Confidence 33 24688999999999999999999999999999976655 566776688889999975 7899999987766
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.76 E-value=7.6e-09 Score=102.86 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=93.6
Q ss_pred cceeecccCCCCCeEEEEeccccCchhhhhhhcCChhhHHHHHHHHHHHHHHHHHhhcCCCCCeeeeEEEEeCCCCCccc
Q 011383 208 SAAYMNGVDREGHPVCYNIYGVFESDELYQKTFGTEEKRGQFLRWRLRLMEQGIQKLDFKPGGISSLLQINDLKNAPVLA 287 (487)
Q Consensus 208 ~~~~~~G~Dk~GrPV~~~~~g~~d~~~l~~~~~~~e~~~~~~lr~~i~~~E~~l~~l~~~~~~i~~iv~IiDl~g~s~~~ 287 (487)
+.+|-.|.|++|+||+|+.+++++... .+.+.++-+.+..++..+. ....+|+|+.+++...
T Consensus 30 ~~f~~~g~d~dG~PViv~~~~~~~~~~---------~D~e~Lly~il~tl~~~~~---------~~y~lV~D~T~~~~~n 91 (290)
T 3peg_A 30 SIFYQAGTSKAGNPIFYYVARRFKTGQ---------INGDLLIYHVLLTLKPYYA---------KPYEIVVDLTHTGPSN 91 (290)
T ss_dssp TTEEEEEECTTSCEEEEEEGGGCCBTT---------BCHHHHHHHHHHHHTTTTT---------SCEEEEEECTTCCGGG
T ss_pred CeEEEeccCCCCCEEEEEEeecCCccC---------CCHHHHHHHHHHHHHHhcC---------CCeEEEEEcCCCCccC
Confidence 345556899999999999999987532 2245566555555554431 2489999999998533
Q ss_pred hhhHHHHHHHHHHHhccccccccceeEEEeCchHHHHHH-HHhcccCChhhhcceEEeCCccchHHHhccCCCCCc
Q 011383 288 KKELRVATKQAVDLLQNNYPEFVARNIIINAPFWYYALN-ALISPFLTQRTKSKFVVARPAKVTETLLKYIPAEEL 362 (487)
Q Consensus 288 ~~~l~~~~k~ii~llq~~YPE~L~~i~IINaP~~f~~lw-~ivkpfL~~~Tr~KI~~~~~~~~~e~L~k~Id~e~L 362 (487)
.. ....++.+.+++...|+..++++||+|++++|...+ ...++|.+.+..+|+++++. ...|..+++++++
T Consensus 92 ~p-~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~---~~~L~~~i~~~~~ 163 (290)
T 3peg_A 92 RF-KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC---PGKLAEHIEHEQQ 163 (290)
T ss_dssp CC-CHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS---SCC----------
T ss_pred CC-hHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC---HHHHHhhCCHHHh
Confidence 22 246889999999999999999999999999998744 57788888888999999864 3458889877743
No 8
>2cio_B Inhibitor of cysteine peptidase; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Trypanosoma brucei}
Probab=54.43 E-value=94 Score=25.90 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=50.6
Q ss_pred eEEEecCCCeEEEEEeecCCCceEEEEEEEcCcc------eEEEEEEecCCCCc-eEEEeecceecCCCcccccceEEcC
Q 011383 385 SEITLKAGSTETIEIQAPEIGTTITWDLTVLGWE------VSYKEEFVPTDEGS-YTIIVQKGKKMGSHEGPIRNTFKNN 457 (487)
Q Consensus 385 ~~v~VkaG~~~~v~i~v~e~gs~l~Wef~t~~~D------I~Fgi~~~~~~~~~-~~~iv~~~~r~~~~~~p~~gs~~~~ 457 (487)
..++++.|....|.++- .++.=..|.+...... +..+-.|.|...+. ... ++...+++- ....-.|++.
T Consensus 13 ~ti~l~~Ge~~~I~L~~-NPtTGY~W~~~~~~~~~l~~~~~~v~~~y~~~~~~~~~~~--~~~~~vG~g-G~~~~~fka~ 88 (121)
T 2cio_B 13 KTIRMVIGETFTIELES-NPTTGYTWLRSGLAGTELSDCTFAIQSKFNNRAPHDNHKN--HRRLLVGAG-GTMVLEVKAL 88 (121)
T ss_pred cEEEEcCCCEEEEEeCC-CCCCCeEEEEecCccccCCCccEEEeeeEEcCCCCccccc--ccccEeCCC-ceEEEEEEEe
Confidence 36999999999888875 3445688998873211 33333444433211 000 111123332 2346778899
Q ss_pred cCcEEEEEEEcCCC
Q 011383 458 EAGKLVLTIDNASS 471 (487)
Q Consensus 458 ~~G~yvL~fDNs~S 471 (487)
+||++.|.|....+
T Consensus 89 ~~G~~~i~~~Y~Rp 102 (121)
T 2cio_B 89 KAGKHTLSLAYGRP 102 (121)
T ss_pred cCceEEEEEEEECc
Confidence 99999999998766
No 9
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=52.83 E-value=8.1 Score=32.97 Aligned_cols=25 Identities=12% Similarity=0.022 Sum_probs=20.6
Q ss_pred CCCcccccceEEcCcCcEEEEEEEc
Q 011383 444 GSHEGPIRNTFKNNEAGKLVLTIDN 468 (487)
Q Consensus 444 ~~~~~p~~gs~~~~~~G~yvL~fDN 468 (487)
+.+-.+..|.|+|+.||+|.+.|-=
T Consensus 30 G~~yn~~TG~Ftap~~G~Y~Fs~~~ 54 (134)
T 2wnv_A 30 EEPYQNHSGRFVCTVPGYYYFTFQV 54 (134)
T ss_dssp TSCEETTTTEEECCSCEEEEEEEEE
T ss_pred CCCccCCCCEEECeeCCEEEEEEEE
Confidence 3445577999999999999999953
No 10
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=52.06 E-value=8.6 Score=32.98 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.2
Q ss_pred CCCcccccceEEcCcCcEEEEEEE
Q 011383 444 GSHEGPIRNTFKNNEAGKLVLTID 467 (487)
Q Consensus 444 ~~~~~p~~gs~~~~~~G~yvL~fD 467 (487)
+.+-.+..|.|+|+.||+|.+.|.
T Consensus 33 G~~yn~~TG~Ftap~~G~Y~Fs~~ 56 (136)
T 2wnv_B 33 NNNYEPRSGKFTCKVPGLYYFTYH 56 (136)
T ss_dssp TSCEETTTTEEECSSCEEEEEEEE
T ss_pred CCcccCCCCEEECCcCeEEEEEEE
Confidence 344557799999999999999996
No 11
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=51.62 E-value=96 Score=25.19 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=26.4
Q ss_pred cceEEcCcCcEEEEEEEcC---CCCceEEEEEEEee
Q 011383 451 RNTFKNNEAGKLVLTIDNA---SSKKKRVLYRYKTK 483 (487)
Q Consensus 451 ~gs~~~~~~G~yvL~fDNs---~S~~Kkv~Y~~~v~ 483 (487)
..+.+.|..|.|+|..=.. ..+.+...|++.|.
T Consensus 74 ~~~~~LP~sG~Y~I~V~~~r~~ar~~~~~~Y~L~v~ 109 (111)
T 4g9s_B 74 HGQYSLPASGKYELRVLQTRNDARKNKTKKYNVDIQ 109 (111)
T ss_dssp TSCEECSSSEEEEEEEECCHHHHHTTCEEEEEEEEE
T ss_pred eEEEEecCCccEEEEEEeccchhccCCCcCEEEEEE
Confidence 5677899999999998643 33788899999874
No 12
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=51.60 E-value=8.8 Score=32.64 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=19.7
Q ss_pred CCcccccceEEcCcCcEEEEEEE
Q 011383 445 SHEGPIRNTFKNNEAGKLVLTID 467 (487)
Q Consensus 445 ~~~~p~~gs~~~~~~G~yvL~fD 467 (487)
.+-.+..|.|+|+.||+|.+.|.
T Consensus 35 ~~yn~~TG~Ftap~~G~Y~Fs~~ 57 (131)
T 2wnv_C 35 GDYDTSTGKFTCKVPGLYYFVYH 57 (131)
T ss_dssp CCEETTTTEEECSSCEEEEEEEE
T ss_pred CCccCCCCEEEcccCCEEEEEEE
Confidence 34457799999999999999996
No 13
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=50.70 E-value=1.1e+02 Score=25.57 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=45.9
Q ss_pred eeEEEecCCCeEEEEEeecCCCceEEEEEEEcCcceEEEEEEecCCCCceEEEeecceecCCCcccccceEEcCcCcEEE
Q 011383 384 VSEITLKAGSTETIEIQAPEIGTTITWDLTVLGWEVSYKEEFVPTDEGSYTIIVQKGKKMGSHEGPIRNTFKNNEAGKLV 463 (487)
Q Consensus 384 ~~~v~VkaG~~~~v~i~v~e~gs~l~Wef~t~~~DI~Fgi~~~~~~~~~~~~iv~~~~r~~~~~~p~~gs~~~~~~G~yv 463 (487)
+=.+.|...+...|.+.-.. +.-+.|.+-..+ +.+ |..+. .....+.|+|.+.+||+|.
T Consensus 40 ~y~F~V~~~g~v~I~l~~~~-~~~~~w~ly~~~--------------~ny--v~y~~----~~gn~~~~~~~~~~pGkYY 98 (121)
T 3jqw_A 40 YFYFDVITPGEVKIDINKLG-YGGATWVVYDEN--------------NNA--VSYAT----DDGQNLSGKFKADKPGRYY 98 (121)
T ss_dssp EEEEEESSCEEEEEEEEECS-SSEEEEEEECTT--------------SCE--EEECE----ECSSEEEEEEEECSCEEEE
T ss_pred EEEEEeCCCCeEEEEEEecC-CCcEEEEEEeCC--------------CCe--EEEec----cCCCEEEEEEEeCCCeeEE
Confidence 34556666666666655532 445666653222 222 21111 1123568999999999999
Q ss_pred EEEEcCCCCceEEEEEEEeec
Q 011383 464 LTIDNASSKKKRVLYRYKTKN 484 (487)
Q Consensus 464 L~fDNs~S~~Kkv~Y~~~v~~ 484 (487)
|.+-+ ||. ....|.+.++-
T Consensus 99 l~Vy~-y~~-~~g~Y~l~i~g 117 (121)
T 3jqw_A 99 IHLYM-FNG-SYMPYRINIEG 117 (121)
T ss_dssp EEEEE-EEC-SCEEEEEEEEE
T ss_pred EEEEE-ecC-CCccEEEEEEe
Confidence 99876 432 25689888864
No 14
>2ka3_A Emilin-1; C1Q-like domain, homotrimeric protein complex, beta-sandwich, structural protein, cell adhesion, extracellular matrix; NMR {Homo sapiens} PDB: 2oii_A
Probab=48.01 E-value=11 Score=33.56 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=19.9
Q ss_pred CCCcccccceEEcCcCcEEEEEEE
Q 011383 444 GSHEGPIRNTFKNNEAGKLVLTID 467 (487)
Q Consensus 444 ~~~~~p~~gs~~~~~~G~yvL~fD 467 (487)
+.+-.+..|.|+|+.||+|.+.|.
T Consensus 43 G~~yn~~TG~FTaPv~GvY~Fsf~ 66 (162)
T 2ka3_A 43 GGYYDPETGVFTAPLAGRYLLSAV 66 (162)
T ss_dssp SCCEETTTTEEECCCCEEEEEEEC
T ss_pred CCceECCCCEEECCCCeEEEEEEE
Confidence 334457799999999999999993
No 15
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=43.08 E-value=25 Score=25.82 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=23.9
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHH
Q 011383 159 GIDVILLKFLRAREFKVNDALEMLKN 184 (487)
Q Consensus 159 ~~D~~LLRFLrAr~fdv~~A~~~L~~ 184 (487)
.+...+-.-|+++++|++.|+.+|.+
T Consensus 23 ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 23 MDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 68899999999999999999999865
No 16
>1gr3_A Collagen X; extracellular matrix, connective tissue; HET: CPS; 2.0A {Homo sapiens} SCOP: b.22.1.1
Probab=41.15 E-value=16 Score=32.38 Aligned_cols=24 Identities=17% Similarity=0.229 Sum_probs=20.1
Q ss_pred CCcccccceEEcCcCcEEEEEEEc
Q 011383 445 SHEGPIRNTFKNNEAGKLVLTIDN 468 (487)
Q Consensus 445 ~~~~p~~gs~~~~~~G~yvL~fDN 468 (487)
.+-.+..|.|+|+.||+|.+.|.=
T Consensus 60 n~yn~~TG~FtaPv~GvY~Fsft~ 83 (160)
T 1gr3_A 60 QHYDPRTGIFTCQIPGIYYFSYHV 83 (160)
T ss_dssp CCEETTTTEEECSSCEEEEEEEEE
T ss_pred CceeCCCCEEEcccCCEEEEEEEE
Confidence 344567999999999999999973
No 17
>2xr4_A Lectin; sugar binding protein, LUNG, pathogen; 1.90A {Burkholderia cenocepacia}
Probab=40.77 E-value=1.4e+02 Score=24.80 Aligned_cols=88 Identities=10% Similarity=0.044 Sum_probs=59.2
Q ss_pred CChhhhcceEEeCCccchHHHhccCCCCCcccc-cCCcccCCCCccccCCCce-eEEEecCCCeEEEEEeecCCCceEEE
Q 011383 333 LTQRTKSKFVVARPAKVTETLLKYIPAEELPVQ-YGGFKRENDFEFSKEGGAV-SEITLKAGSTETIEIQAPEIGTTITW 410 (487)
Q Consensus 333 L~~~Tr~KI~~~~~~~~~e~L~k~Id~e~LP~~-yGG~~~~~d~~~~~~~~~~-~~v~VkaG~~~~v~i~v~e~gs~l~W 410 (487)
||+.++=.+..+.++...+++.=|||-+..|+. |-|....+. .+ +.+.=+.+++..|++.+.-.-|.|..
T Consensus 9 LP~ni~Fg~ta~~Nsa~~QtikvyIdd~~~~~aT~~g~gt~d~--------~~~t~~lnSg~GkVriev~~nGkps~l~s 80 (116)
T 2xr4_A 9 LPPHIKFGVTALTHAANDQTIDIYIDDDPKPAATFKGAGAQDQ--------NLGTKVLDSGNGRVRVIVMANGRPSRLGS 80 (116)
T ss_dssp CCTTCEEEEEEEECSCSCCEEEEEETTCSSCSEEECCCSSTTE--------EEEEEEEECTTSEEEEEEEETTEECEEEE
T ss_pred CCCCcEEeEEEEeccCCceeEEEEeCCCCccceeeeccCcCCC--------ccceEEEecCCCeEEEEEEeCCcccccee
Confidence 788888888888766678888889998777776 777655321 11 12222233455566666544477888
Q ss_pred EEEEcCcceEEEEEEecC
Q 011383 411 DLTVLGWEVSYKEEFVPT 428 (487)
Q Consensus 411 ef~t~~~DI~Fgi~~~~~ 428 (487)
...+..+..+|++.-...
T Consensus 81 ~~~~l~~k~~~~iigaed 98 (116)
T 2xr4_A 81 RQVDIFKKSYFGIIGSED 98 (116)
T ss_dssp EEEEETTTEEEEEEEEEC
T ss_pred eeeeccCCccEEEEEccc
Confidence 888888889999876543
No 18
>2h7w_A Chagasin; beta-strands, immunoglobulin-fold, hydrolase inhibitor; 1.70A {Trypanosoma cruzi} SCOP: b.1.26.1 PDB: 2nnr_A 2oul_B 3cbj_B 3cbk_B 3e1z_A 2fo8_A 2nqd_A*
Probab=40.76 E-value=1.7e+02 Score=24.81 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=47.1
Q ss_pred eEEEecCCCeEEEEEeecCCCceEEEEEEEcCcc------eEEEEEEecCCCCceEEEeecceecCCCcccccceEEcCc
Q 011383 385 SEITLKAGSTETIEIQAPEIGTTITWDLTVLGWE------VSYKEEFVPTDEGSYTIIVQKGKKMGSHEGPIRNTFKNNE 458 (487)
Q Consensus 385 ~~v~VkaG~~~~v~i~v~e~gs~l~Wef~t~~~D------I~Fgi~~~~~~~~~~~~iv~~~~r~~~~~~p~~gs~~~~~ 458 (487)
+.++|+.|....|.++- .+.+=..|.+...+.. +..+-.|.|.+.+ .+++ .....-.|++.+
T Consensus 33 ~~I~v~~Ge~~~I~L~~-NPTTGY~W~~~~~~~~~L~~~~~~v~~~y~p~~~~----------~vGa-gG~~~w~f~A~~ 100 (131)
T 2h7w_A 33 ATLTVAVGELVEIQLPS-NPTTGFAWYFEGGTKESPNESMFTVENKYFPPDSK----------LLGA-GGTEHFHVTVKA 100 (131)
T ss_dssp CEEEECTTCEEEEEEEE-CGGGSCEEEBTTTBSSCSCTTTEEEEEEEECCTTC----------CTTC-CEEEEEEEEECS
T ss_pred CEEEEeCCCEEEEEeCC-CCCCCeEEEEecCCCccccccceeecceeeeCCCC----------CcCC-CcEEEEEEEEcc
Confidence 57999999999999985 3334578998764331 1122223332211 1222 112356788899
Q ss_pred CcEEEEEEEcCCC
Q 011383 459 AGKLVLTIDNASS 471 (487)
Q Consensus 459 ~G~yvL~fDNs~S 471 (487)
||.+.|.|....+
T Consensus 101 ~G~~~i~~~Y~Rp 113 (131)
T 2h7w_A 101 AGTHAVNLTYMRP 113 (131)
T ss_dssp SEEEEEEEEEECT
T ss_pred CceEEEEEEEECc
Confidence 9999999998766
No 19
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1
Probab=36.78 E-value=19 Score=32.48 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=20.4
Q ss_pred CCCcccccceEEcCcCcEEEEEEEc
Q 011383 444 GSHEGPIRNTFKNNEAGKLVLTIDN 468 (487)
Q Consensus 444 ~~~~~p~~gs~~~~~~G~yvL~fDN 468 (487)
+.+-.+..|.|+|+.+|+|.+.|.=
T Consensus 77 Gn~Yn~~TG~FTaPv~GvY~Fsft~ 101 (178)
T 1o91_A 77 RQNYNPQTGIFTCEVPGVYYFAYHV 101 (178)
T ss_dssp TTCEETTTTEEECCSCEEEEEEEEE
T ss_pred CCceeCCCCEEEcccCeEEEEEEEE
Confidence 3344567999999999999999973
No 20
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=34.12 E-value=94 Score=25.82 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=54.7
Q ss_pred CCCCCeEEEEeccccCchhhhhhhcCChhhHHHHHHHHHHHHHHHHHhhcCCCCCeeeeEEEEeCCCCCccchhhHHHHH
Q 011383 216 DREGHPVCYNIYGVFESDELYQKTFGTEEKRGQFLRWRLRLMEQGIQKLDFKPGGISSLLQINDLKNAPVLAKKELRVAT 295 (487)
Q Consensus 216 Dk~GrPV~~~~~g~~d~~~l~~~~~~~e~~~~~~lr~~i~~~E~~l~~l~~~~~~i~~iv~IiDl~g~s~~~~~~l~~~~ 295 (487)
+..+..|.+...|.++. ++|-. .+-.++..+... +. ..+.+++|++.+.++....+..-+
T Consensus 16 ~~~~~vl~v~~~G~lt~--------------~d~~~-l~~~l~~~l~~~----~~-~~i~ll~~~~~f~G~~~~a~~~d~ 75 (126)
T 2q3l_A 16 SQDDFYLAFKAVGKLTH--------------EDYEQ-MTPLLESALAGI----KT-PEIVALIDITELDGLSLHAAWDDL 75 (126)
T ss_dssp ETTEEEEEEEEEEEECH--------------HHHHH-HHHHHHHHTTTC----CS-SCEEEEEEEEEEEEECHHHHHHHH
T ss_pred cCCCCEEEEEEEeeECH--------------HHHHH-HHHHHHHHHHhC----CC-ceEEEEEEecCCCCCCHHHHHHHH
Confidence 44555566666676543 45544 455666655422 22 114445555444333332222222
Q ss_pred HHHHHHhccccccccceeEEEeCchHHHHHHHHhcccCChh
Q 011383 296 KQAVDLLQNNYPEFVARNIIINAPFWYYALNALISPFLTQR 336 (487)
Q Consensus 296 k~ii~llq~~YPE~L~~i~IINaP~~f~~lw~ivkpfL~~~ 336 (487)
+ +-..| -..+.|+=||--+.|...+-+++++|++..
T Consensus 76 k----~~~~h-~~~~~RiAvV~d~~W~~~~~~~~~~~~~~e 111 (126)
T 2q3l_A 76 K----LGLKH-GKEFKRVAIIGQGELQEWATRVANWFTPGE 111 (126)
T ss_dssp H----HHHHH-GGGEEEEEEECCSHHHHHHHHHHHHHCSSE
T ss_pred H----hhhhH-HhcCCEEEEEcChHHHHHHHHHHhhccCCc
Confidence 2 11233 367889999999999999999999997753
No 21
>3m86_A Amoebiasin-2; cysteine protease inhibitor, protease, protein binding; HET: 1PE; 1.65A {Entamoeba histolytica} PDB: 3m88_A
Probab=34.09 E-value=1.9e+02 Score=23.52 Aligned_cols=86 Identities=10% Similarity=0.176 Sum_probs=53.8
Q ss_pred eEEEecCCCeEEEEEeecCCCceEEEEEEEcCcceEEEE-EEe--cCCCCceEEEeecceecCCCcccccceEEcCcCcE
Q 011383 385 SEITLKAGSTETIEIQAPEIGTTITWDLTVLGWEVSYKE-EFV--PTDEGSYTIIVQKGKKMGSHEGPIRNTFKNNEAGK 461 (487)
Q Consensus 385 ~~v~VkaG~~~~v~i~v~e~gs~l~Wef~t~~~DI~Fgi-~~~--~~~~~~~~~iv~~~~r~~~~~~p~~gs~~~~~~G~ 461 (487)
..++|+.|....|.++- .+.+=..|.+...+.-+...- .|. |.+ .-.+++ .....-.|++.++|.
T Consensus 16 ~~I~v~~Ge~~~I~L~~-NptTGY~W~~~~~~~~~~l~~~~~~~~p~~----------~~~vG~-gG~~~~~f~a~~~G~ 83 (111)
T 3m86_A 16 ATLHISFNDLIKIQLRT-NPSTGYAWNIEYPTDTFSLSQDTIKAEPHP----------SGMVGF-PSIREIQLKPLKVGT 83 (111)
T ss_dssp CEEEECTTCEEEEEEEE-CGGGTCEEEEECCTTTEEEEEEEEEECCCS----------TTTSSC-SEEEEEEEEESSCEE
T ss_pred cEEEEcCCCEEEEEECC-CCCCCeEEEEecCCCcEEEcccceEeCCCC----------CCCCCC-CeeEEEEEEEeCCeE
Confidence 47999999999999986 334558899876633232211 011 111 112222 112355688899999
Q ss_pred EEEEEEcCCC------CceEEEEEEEe
Q 011383 462 LVLTIDNASS------KKKRVLYRYKT 482 (487)
Q Consensus 462 yvL~fDNs~S------~~Kkv~Y~~~v 482 (487)
+.|.|....+ -.++..|.|.|
T Consensus 84 ~~i~~~Y~RpWe~~~~~~~tf~~~V~V 110 (111)
T 3m86_A 84 TTIKLGYSRPWEKGKEPLRSLTYSVVI 110 (111)
T ss_dssp EEEEEEEECTTCCSCCCSEEEEEEEEE
T ss_pred EEEEEEEECccCCCCCcccEEEEEEEE
Confidence 9999998766 35667777766
No 22
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=33.33 E-value=2.1e+02 Score=23.80 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=24.7
Q ss_pred cccceEEcCcCcEEEEEEEcCCCCceEEEEEEEeec
Q 011383 449 PIRNTFKNNEAGKLVLTIDNASSKKKRVLYRYKTKN 484 (487)
Q Consensus 449 p~~gs~~~~~~G~yvL~fDNs~S~~Kkv~Y~~~v~~ 484 (487)
.+.|+|.+. ||+|.|.+... .....|.+.|+.
T Consensus 88 ~~~~~~~~~-pGkYYl~Vy~y---~~~g~Y~l~v~~ 119 (119)
T 1nqj_A 88 KVSNKVKLR-PGKYYLLVYKY---SGSGNYELRVNK 119 (119)
T ss_dssp EEEEEEEEC-SEEEEEEEEEE---ESCEEEEEEEEC
T ss_pred cEEEEEEcC-CcEEEEEEEEe---CCCceEEEEEeC
Confidence 457889887 99999998763 356788888763
No 23
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=33.11 E-value=41 Score=25.69 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=26.5
Q ss_pred CCCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 011383 151 LLPSKGAEGIDVILLKFLRAREFKVNDALEMLKN 184 (487)
Q Consensus 151 l~p~~~~~~~D~~LLRFLrAr~fdv~~A~~~L~~ 184 (487)
|+|+ ..+.|+.+.|..++.|++.+...|-.
T Consensus 23 LfPd----LG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 23 LLPD----LGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HCCS----SCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred Hccc----CCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 6775 88999999999999999999988754
No 24
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=31.92 E-value=55 Score=25.73 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 011383 156 GAEGIDVILLKFLRAREFKVNDALEMLKNT 185 (487)
Q Consensus 156 ~~~~~D~~LLRFLrAr~fdv~~A~~~L~~~ 185 (487)
|+..+|..|.+-....+||+++|+..+.+.
T Consensus 46 GdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 46 GDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp TTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 677899999999999999999999988654
No 25
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=29.98 E-value=30 Score=29.76 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=19.6
Q ss_pred CCCcccccceEEcCcCcEEEEEEE
Q 011383 444 GSHEGPIRNTFKNNEAGKLVLTID 467 (487)
Q Consensus 444 ~~~~~p~~gs~~~~~~G~yvL~fD 467 (487)
+.+--+..|.|+|+-+|+|.+.|.
T Consensus 32 G~~yn~sTG~FTaPv~G~Y~Fs~~ 55 (148)
T 4f3j_A 32 QGHYDAVTGKFTCQVPGVYYFAVH 55 (148)
T ss_dssp TCCEETTTTEEECCSCEEEEEEEE
T ss_pred CCCccCCCCeEECCcceEEEEEEE
Confidence 344456799999999999999885
No 26
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=29.46 E-value=97 Score=23.31 Aligned_cols=29 Identities=10% Similarity=0.319 Sum_probs=24.2
Q ss_pred eeEEEecCCCeEEEEEeecCCCceEEEEE
Q 011383 384 VSEITLKAGSTETIEIQAPEIGTTITWDL 412 (487)
Q Consensus 384 ~~~v~VkaG~~~~v~i~v~e~gs~l~Wef 412 (487)
++.+.+..|+..++...+..+...+.|..
T Consensus 3 lt~v~~~~G~~v~l~C~vs~p~p~v~W~k 31 (84)
T 2lu7_A 3 MTRVRSTPGGDLELVVHLSGPGGPVRWYK 31 (84)
T ss_dssp CCCEEECTTSCEEEECCCSCCSTTCEEEE
T ss_pred CeEEEEecCCCEEEEEEECCCCcEEEEEE
Confidence 46789999999999998877767799975
No 27
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=26.91 E-value=51 Score=23.52 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=21.0
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHH
Q 011383 160 IDVILLKFLRAREFKVNDALEMLK 183 (487)
Q Consensus 160 ~D~~LLRFLrAr~fdv~~A~~~L~ 183 (487)
.-.+|-|.|.+.++|+.+|+..|.
T Consensus 25 egGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 25 EGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp TTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred cccHHHHHHHHccCCHHHHHHHhh
Confidence 346899999999999999998874
No 28
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=24.61 E-value=76 Score=22.30 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=23.2
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 011383 159 GIDVILLKFLRAREFKVNDALEMLKNT 185 (487)
Q Consensus 159 ~~D~~LLRFLrAr~fdv~~A~~~L~~~ 185 (487)
.+-..+-+-|+++++|+++|..+|.+.
T Consensus 18 ~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 18 ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 566788888999999999999998764
No 29
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=24.45 E-value=53 Score=22.08 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=20.1
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHH
Q 011383 160 IDVILLKFLRAREFKVNDALEML 182 (487)
Q Consensus 160 ~D~~LLRFLrAr~fdv~~A~~~L 182 (487)
+......||.+++||++.|+..+
T Consensus 19 ~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 19 EEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 46788999999999999998765
No 30
>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}
Probab=23.92 E-value=69 Score=26.43 Aligned_cols=30 Identities=7% Similarity=0.069 Sum_probs=22.8
Q ss_pred EEcCcCcEEEEEEEcCCC---CceEEEEEEEee
Q 011383 454 FKNNEAGKLVLTIDNASS---KKKRVLYRYKTK 483 (487)
Q Consensus 454 ~~~~~~G~yvL~fDNs~S---~~Kkv~Y~~~v~ 483 (487)
-..+..|.|.|..=-... +.+...|++.|.
T Consensus 80 g~LP~sG~Y~i~V~~~r~~ar~~~~~~Y~L~i~ 112 (114)
T 4dzg_A 80 GALPASGXYLIQVYQMRASARRGEQVPHSLAVS 112 (114)
T ss_dssp EECSSCC-CEEEEECCHHHHHTTCBCCEECEEE
T ss_pred EEecCCCcEEEEEEeccchhccCCCCCeEEEEE
Confidence 378999999999887654 677788988763
No 31
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=23.74 E-value=80 Score=20.33 Aligned_cols=21 Identities=19% Similarity=0.093 Sum_probs=17.2
Q ss_pred HHHHHHhhhcCCCHHHHHHHH
Q 011383 162 VILLKFLRAREFKVNDALEML 182 (487)
Q Consensus 162 ~~LLRFLrAr~fdv~~A~~~L 182 (487)
....+-|+++++|++.|...|
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 19 LEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 455788999999999998765
No 32
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.72 E-value=94 Score=22.11 Aligned_cols=26 Identities=27% Similarity=0.172 Sum_probs=21.4
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHHHH
Q 011383 160 IDVILLKFLRAREFKVNDALEMLKNT 185 (487)
Q Consensus 160 ~D~~LLRFLrAr~fdv~~A~~~L~~~ 185 (487)
++.-.++-|++.++|+++|+..|..+
T Consensus 23 d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 23 NREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34556899999999999999988754
No 33
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=22.60 E-value=97 Score=26.19 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=24.5
Q ss_pred eeeEEEEeCCCCCccchhhHHHHHHHHHHHhccccccccceeEEEeCchHHHHHHHH
Q 011383 272 SSLLQINDLKNAPVLAKKELRVATKQAVDLLQNNYPEFVARNIIINAPFWYYALNAL 328 (487)
Q Consensus 272 ~~iv~IiDl~g~s~~~~~~l~~~~k~ii~llq~~YPE~L~~i~IINaP~~f~~lw~i 328 (487)
++++++.|+ |.+. .+ ..+.+.... | ++.++|+|.+..++-..
T Consensus 59 dgVlvltDL-Ggsp-~N--------~~~al~~~~-~----~v~viNlPmvega~~aa 100 (131)
T 3ct6_A 59 DNLLTFFDL-GSAR-MN--------LDLVSEMTD-K----ELTIFNVPLIEGAYTAS 100 (131)
T ss_dssp SEEEEEESS-GGGH-HH--------HHHHHHTCS-S----EEEECCSCHHHHHHHHH
T ss_pred CCEEEEEeC-CCCh-HH--------HHHHHHhcC-C----CEEEEEhhHHHHHHHHH
Confidence 579999999 5431 11 111111111 2 78888999997666543
No 34
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.45 E-value=78 Score=23.82 Aligned_cols=37 Identities=22% Similarity=0.043 Sum_probs=27.0
Q ss_pred chhhhhhhcCCCCCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 011383 140 VDKDIALWGVPLLPSKGAEGIDVILLKFLRAREFKVNDALEMLKNT 185 (487)
Q Consensus 140 ~~~~~~~wg~~l~p~~~~~~~D~~LLRFLrAr~fdv~~A~~~L~~~ 185 (487)
-+..+.--|. .++.-.+|=|++.++||++|++.|.++
T Consensus 22 ql~qL~~MGF---------~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 22 EMECLQAMGF---------VNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHHHTC---------CCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHcCC---------CcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4455555554 344566999999999999999987653
No 35
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.03 E-value=88 Score=23.48 Aligned_cols=27 Identities=22% Similarity=0.085 Sum_probs=23.8
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 011383 159 GIDVILLKFLRAREFKVNDALEMLKNT 185 (487)
Q Consensus 159 ~~D~~LLRFLrAr~fdv~~A~~~L~~~ 185 (487)
.+...+..-|+++++|++.|+..|.+.
T Consensus 32 lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 32 MDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp SCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 677889999999999999999988654
No 36
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.40 E-value=87 Score=22.85 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=20.5
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHH
Q 011383 160 IDVILLKFLRAREFKVNDALEMLK 183 (487)
Q Consensus 160 ~D~~LLRFLrAr~fdv~~A~~~L~ 183 (487)
+......||.+++||++.|+..+-
T Consensus 29 ~~~~A~~~Le~~~WnLe~Av~~ff 52 (62)
T 2dal_A 29 SESVGKHMLEACNNNLEMAVTMFL 52 (62)
T ss_dssp CHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 367889999999999999998763
No 37
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=20.46 E-value=88 Score=22.68 Aligned_cols=25 Identities=28% Similarity=0.030 Sum_probs=21.1
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHHH
Q 011383 160 IDVILLKFLRAREFKVNDALEMLKN 184 (487)
Q Consensus 160 ~D~~LLRFLrAr~fdv~~A~~~L~~ 184 (487)
++...++=|++.++|+++|++.|..
T Consensus 31 d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 31 DFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4456689999999999999998865
No 38
>4dou_A Adiponectin; single-chain globular domain, calcium binding, C1Q-like DOMA growth factor, serum, hormone; 2.00A {Homo sapiens} PDB: 1c3h_A 1c28_A
Probab=20.46 E-value=55 Score=33.74 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=19.9
Q ss_pred cccccceEEcCcCcEEEEEEEcC
Q 011383 447 EGPIRNTFKNNEAGKLVLTIDNA 469 (487)
Q Consensus 447 ~~p~~gs~~~~~~G~yvL~fDNs 469 (487)
-.|..|.|+|+.||.|.+.|.=+
T Consensus 198 Yn~~TG~Ftcpv~GvY~Fs~~~~ 220 (442)
T 4dou_A 198 YDGSTGKFHCNIPGLYYFAYHIT 220 (442)
T ss_dssp EETTTTEEECCSCEEEEEEEEEE
T ss_pred ccCCCCeEeCccceEEEEEEEEE
Confidence 34779999999999999999843
Done!