Query 011387
Match_columns 487
No_of_seqs 302 out of 3030
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 00:47:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0514 RecQ Superfamily II DN 100.0 4.3E-85 9.2E-90 661.9 41.3 408 25-474 4-414 (590)
2 KOG0352 ATP-dependent DNA heli 100.0 1.6E-81 3.5E-86 592.1 29.3 428 23-478 4-450 (641)
3 PLN03137 ATP-dependent DNA hel 100.0 2.5E-79 5.5E-84 652.3 46.9 421 16-463 436-870 (1195)
4 KOG0353 ATP-dependent DNA heli 100.0 6.2E-77 1.3E-81 553.7 26.8 403 18-460 74-526 (695)
5 KOG0351 ATP-dependent DNA heli 100.0 2.7E-76 6E-81 630.0 34.3 420 22-474 248-675 (941)
6 PRK11057 ATP-dependent DNA hel 100.0 4.2E-72 9.2E-77 593.2 48.3 410 19-473 6-418 (607)
7 TIGR00614 recQ_fam ATP-depende 100.0 9.4E-72 2E-76 576.1 48.3 374 29-415 2-377 (470)
8 TIGR01389 recQ ATP-dependent D 100.0 1.4E-71 3E-76 590.9 46.6 396 27-466 2-400 (591)
9 KOG0330 ATP-dependent RNA heli 100.0 3.9E-56 8.4E-61 416.5 25.0 351 8-381 54-423 (476)
10 KOG0331 ATP-dependent RNA heli 100.0 1.7E-55 3.6E-60 438.4 29.7 343 15-378 91-461 (519)
11 PRK04837 ATP-dependent RNA hel 100.0 2.8E-54 6E-59 441.7 34.4 342 15-377 8-374 (423)
12 PTZ00110 helicase; Provisional 100.0 4.8E-53 1E-57 441.9 38.8 347 13-379 128-498 (545)
13 PRK11776 ATP-dependent RNA hel 100.0 9.1E-53 2E-57 435.1 37.0 343 15-378 4-362 (460)
14 PRK04537 ATP-dependent RNA hel 100.0 2E-52 4.3E-57 438.7 38.5 343 16-377 10-376 (572)
15 COG0513 SrmB Superfamily II DN 100.0 2.1E-52 4.6E-57 433.1 36.7 345 15-379 29-395 (513)
16 PRK10590 ATP-dependent RNA hel 100.0 2E-52 4.3E-57 430.9 35.8 342 16-378 2-365 (456)
17 PLN00206 DEAD-box ATP-dependen 100.0 2.8E-52 6E-57 435.0 35.5 346 12-378 118-488 (518)
18 PRK11192 ATP-dependent RNA hel 100.0 9.9E-52 2.1E-56 424.7 37.4 342 16-376 2-363 (434)
19 KOG0345 ATP-dependent RNA heli 100.0 1.9E-52 4.1E-57 400.2 29.2 335 19-375 10-374 (567)
20 PRK01297 ATP-dependent RNA hel 100.0 2.1E-51 4.6E-56 426.0 39.0 350 12-378 84-455 (475)
21 PRK11634 ATP-dependent RNA hel 100.0 1.7E-51 3.7E-56 433.9 38.6 345 15-380 6-367 (629)
22 KOG0333 U5 snRNP-like RNA heli 100.0 8E-52 1.7E-56 400.2 30.5 346 12-375 242-634 (673)
23 KOG0328 Predicted ATP-dependen 100.0 3.5E-51 7.6E-56 367.9 27.0 349 9-377 21-385 (400)
24 KOG0338 ATP-dependent RNA heli 100.0 2.1E-51 4.6E-56 395.8 24.5 343 14-377 180-545 (691)
25 KOG0342 ATP-dependent RNA heli 100.0 9.5E-51 2.1E-55 391.1 27.3 344 11-376 78-448 (543)
26 PTZ00424 helicase 45; Provisio 100.0 3.7E-50 8E-55 409.8 32.3 343 15-377 28-386 (401)
27 KOG0340 ATP-dependent RNA heli 100.0 3.7E-50 8.1E-55 372.1 26.3 356 11-381 3-377 (442)
28 KOG0343 RNA Helicase [RNA proc 100.0 6.1E-50 1.3E-54 388.9 27.0 339 13-375 67-432 (758)
29 TIGR03817 DECH_helic helicase/ 100.0 5.5E-49 1.2E-53 422.7 35.8 342 18-371 17-394 (742)
30 KOG0336 ATP-dependent RNA heli 100.0 4.1E-49 8.9E-54 370.7 25.0 341 19-378 224-585 (629)
31 KOG0348 ATP-dependent RNA heli 100.0 9E-49 2E-53 379.7 27.5 351 13-376 134-565 (708)
32 KOG0346 RNA helicase [RNA proc 100.0 9.5E-49 2.1E-53 371.6 25.4 345 9-373 13-418 (569)
33 KOG0326 ATP-dependent RNA heli 100.0 3.8E-49 8.2E-54 360.4 16.8 345 15-382 85-446 (459)
34 KOG0347 RNA helicase [RNA proc 100.0 3E-47 6.5E-52 370.2 20.4 351 14-380 180-585 (731)
35 KOG0335 ATP-dependent RNA heli 100.0 1.6E-46 3.5E-51 367.9 24.1 343 16-375 75-454 (482)
36 KOG0332 ATP-dependent RNA heli 100.0 6.2E-45 1.3E-49 339.4 24.8 351 9-380 84-459 (477)
37 KOG0341 DEAD-box protein abstr 100.0 6.9E-46 1.5E-50 346.8 14.9 334 12-367 167-530 (610)
38 KOG0339 ATP-dependent RNA heli 100.0 1.5E-43 3.3E-48 341.1 27.6 358 2-378 210-588 (731)
39 PRK02362 ski2-like helicase; P 100.0 7.8E-43 1.7E-47 378.8 36.4 326 16-366 2-398 (737)
40 TIGR00580 mfd transcription-re 100.0 3.8E-42 8.2E-47 373.1 39.0 334 17-376 431-787 (926)
41 PRK13767 ATP-dependent helicas 100.0 5E-42 1.1E-46 375.9 37.6 320 22-363 18-396 (876)
42 PRK10917 ATP-dependent DNA hel 100.0 5.4E-41 1.2E-45 359.5 38.1 317 22-363 246-587 (681)
43 KOG0350 DEAD-box ATP-dependent 100.0 1.1E-42 2.5E-47 335.1 21.5 355 13-379 125-554 (620)
44 KOG0334 RNA helicase [RNA proc 100.0 5.6E-42 1.2E-46 358.0 26.4 348 11-377 361-732 (997)
45 PRK14701 reverse gyrase; Provi 100.0 2.7E-41 5.8E-46 381.9 31.9 333 23-376 65-467 (1638)
46 COG1201 Lhr Lhr-like helicases 100.0 6.6E-41 1.4E-45 351.9 32.3 324 21-364 7-361 (814)
47 TIGR00643 recG ATP-dependent D 100.0 3.4E-40 7.5E-45 351.2 37.9 315 21-362 219-563 (630)
48 PRK10689 transcription-repair 100.0 3.2E-40 6.8E-45 365.5 38.8 335 16-376 579-936 (1147)
49 KOG4284 DEAD box protein [Tran 100.0 7.6E-42 1.6E-46 337.5 22.3 341 13-373 23-388 (980)
50 KOG0327 Translation initiation 100.0 8.3E-42 1.8E-46 321.2 20.7 342 14-377 25-382 (397)
51 PRK00254 ski2-like helicase; P 100.0 4E-40 8.6E-45 356.8 35.4 329 17-374 3-398 (720)
52 KOG0344 ATP-dependent RNA heli 100.0 3.6E-41 7.7E-46 332.3 24.2 342 20-377 141-507 (593)
53 PRK01172 ski2-like helicase; P 100.0 2.8E-39 6.1E-44 348.7 32.0 335 16-375 2-389 (674)
54 KOG0337 ATP-dependent RNA heli 100.0 9E-41 2E-45 316.0 16.8 342 14-376 20-379 (529)
55 PRK09751 putative ATP-dependen 100.0 5.5E-37 1.2E-41 341.3 31.6 288 58-363 1-383 (1490)
56 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.5E-36 3.2E-41 320.8 30.4 318 25-363 3-389 (844)
57 PRK09401 reverse gyrase; Revie 100.0 2E-36 4.2E-41 336.1 32.0 306 25-350 68-429 (1176)
58 TIGR01587 cas3_core CRISPR-ass 100.0 4.1E-36 8.9E-41 301.6 27.2 301 55-366 1-337 (358)
59 TIGR03158 cas3_cyano CRISPR-as 100.0 1.6E-35 3.5E-40 294.9 31.0 300 42-350 1-357 (357)
60 COG1111 MPH1 ERCC4-like helica 100.0 4.5E-35 9.7E-40 285.1 31.2 316 36-371 13-487 (542)
61 COG1202 Superfamily II helicas 100.0 4.3E-36 9.2E-41 294.0 23.1 333 16-365 195-553 (830)
62 PHA02653 RNA helicase NPH-II; 100.0 4.5E-35 9.7E-40 308.0 32.4 300 42-371 168-520 (675)
63 PRK12898 secA preprotein trans 100.0 1.5E-34 3.1E-39 299.6 31.9 325 27-368 93-589 (656)
64 PHA02558 uvsW UvsW helicase; P 100.0 1.8E-34 3.8E-39 300.1 27.5 297 37-365 113-452 (501)
65 PRK09200 preprotein translocas 100.0 8.9E-34 1.9E-38 299.7 32.2 325 26-367 67-543 (790)
66 COG1205 Distinct helicase fami 100.0 5.8E-34 1.2E-38 307.6 30.2 335 22-365 55-422 (851)
67 TIGR01970 DEAH_box_HrpB ATP-de 100.0 9.9E-34 2.1E-38 304.7 30.2 302 43-369 7-340 (819)
68 PRK11664 ATP-dependent RNA hel 100.0 6.5E-34 1.4E-38 306.8 25.9 297 44-369 11-343 (812)
69 TIGR03714 secA2 accessory Sec 100.0 5.5E-33 1.2E-37 291.0 31.7 327 28-368 61-540 (762)
70 PRK13766 Hef nuclease; Provisi 100.0 3.7E-32 7.9E-37 298.7 36.6 316 37-369 14-483 (773)
71 COG1204 Superfamily II helicas 100.0 2.4E-33 5.1E-38 298.8 25.8 323 19-362 13-405 (766)
72 PRK05580 primosome assembly pr 100.0 6E-32 1.3E-36 288.8 34.9 321 38-374 144-558 (679)
73 TIGR01054 rgy reverse gyrase. 100.0 2.5E-32 5.5E-37 303.7 32.6 292 25-337 66-409 (1171)
74 TIGR00963 secA preprotein tran 100.0 2.5E-32 5.4E-37 284.3 30.0 325 26-368 45-520 (745)
75 KOG0354 DEAD-box like helicase 100.0 2.3E-32 5E-37 280.9 23.8 314 37-368 61-532 (746)
76 TIGR00603 rad25 DNA repair hel 100.0 1.1E-31 2.3E-36 281.4 27.9 304 38-367 255-609 (732)
77 KOG0952 DNA/RNA helicase MER3/ 100.0 2.9E-31 6.2E-36 275.8 29.3 332 31-378 103-504 (1230)
78 TIGR00595 priA primosomal prot 100.0 1.5E-31 3.4E-36 275.9 27.2 292 57-364 1-380 (505)
79 COG1200 RecG RecG-like helicas 100.0 2E-30 4.4E-35 263.0 33.9 325 17-366 242-592 (677)
80 PRK04914 ATP-dependent helicas 100.0 2.8E-30 6.1E-35 279.6 32.8 315 38-363 152-601 (956)
81 COG1197 Mfd Transcription-repa 100.0 2.8E-29 6E-34 267.9 33.7 330 10-365 567-913 (1139)
82 PRK11131 ATP-dependent RNA hel 100.0 3.9E-30 8.4E-35 282.1 27.3 297 42-369 78-415 (1294)
83 KOG0329 ATP-dependent RNA heli 100.0 8.4E-32 1.8E-36 239.6 11.4 296 16-367 43-357 (387)
84 COG1061 SSL2 DNA or RNA helica 100.0 3.5E-29 7.7E-34 255.4 26.5 294 37-357 35-382 (442)
85 PRK12906 secA preprotein trans 100.0 5.1E-28 1.1E-32 254.3 30.3 325 26-367 69-555 (796)
86 KOG0947 Cytoplasmic exosomal R 100.0 5.3E-28 1.1E-32 248.9 28.2 323 26-377 286-737 (1248)
87 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.5E-28 3.3E-33 270.6 24.8 299 44-369 73-408 (1283)
88 KOG0951 RNA helicase BRR2, DEA 100.0 3.5E-28 7.7E-33 255.7 24.4 329 32-377 303-714 (1674)
89 KOG0349 Putative DEAD-box RNA 100.0 2.8E-29 6.1E-34 238.5 13.4 278 80-374 288-624 (725)
90 PRK09694 helicase Cas3; Provis 100.0 1.4E-26 3E-31 249.6 29.5 308 34-354 282-664 (878)
91 PRK12904 preprotein translocas 100.0 7.2E-26 1.6E-30 239.2 31.4 323 27-367 71-575 (830)
92 PRK13104 secA preprotein trans 99.9 8.4E-26 1.8E-30 238.8 28.6 318 28-367 73-589 (896)
93 KOG0948 Nuclear exosomal RNA h 99.9 4.3E-27 9.3E-32 236.8 17.2 318 34-377 126-552 (1041)
94 COG4581 Superfamily II RNA hel 99.9 6.9E-26 1.5E-30 242.0 24.5 321 32-375 114-549 (1041)
95 KOG0950 DNA polymerase theta/e 99.9 5.8E-26 1.3E-30 235.6 20.8 339 26-380 211-626 (1008)
96 PRK11448 hsdR type I restricti 99.9 1.1E-24 2.5E-29 241.2 27.9 308 38-353 413-801 (1123)
97 PRK13107 preprotein translocas 99.9 1.1E-23 2.4E-28 222.1 30.8 323 27-367 72-593 (908)
98 COG1198 PriA Primosomal protei 99.9 6E-24 1.3E-28 222.8 28.7 325 37-376 197-614 (730)
99 COG4098 comFA Superfamily II D 99.9 3E-23 6.6E-28 192.8 27.0 296 38-365 97-415 (441)
100 PLN03142 Probable chromatin-re 99.9 3.7E-23 8E-28 225.2 31.4 307 38-361 169-593 (1033)
101 COG1110 Reverse gyrase [DNA re 99.9 1.4E-22 3.1E-27 211.5 27.1 291 25-337 70-417 (1187)
102 COG1203 CRISPR-associated heli 99.9 5.5E-23 1.2E-27 222.1 23.4 318 39-365 196-550 (733)
103 TIGR00631 uvrb excinuclease AB 99.9 1.4E-21 3E-26 206.8 29.6 129 244-373 426-561 (655)
104 COG1643 HrpA HrpA-like helicas 99.9 9.7E-23 2.1E-27 216.7 20.7 300 41-368 53-390 (845)
105 PRK12899 secA preprotein trans 99.9 1.5E-21 3.3E-26 206.3 29.0 121 244-367 552-683 (970)
106 PRK12900 secA preprotein trans 99.9 7.6E-22 1.6E-26 209.1 25.2 124 243-368 581-714 (1025)
107 cd00268 DEADc DEAD-box helicas 99.9 4.1E-22 8.8E-27 183.8 19.4 182 17-215 1-196 (203)
108 KOG0922 DEAH-box RNA helicase 99.9 3E-22 6.5E-27 201.8 19.7 299 44-369 57-394 (674)
109 PRK12326 preprotein translocas 99.9 4.2E-20 9.2E-25 190.9 31.9 323 27-368 68-550 (764)
110 PRK05298 excinuclease ABC subu 99.9 4.3E-20 9.3E-25 196.9 32.7 119 245-364 431-556 (652)
111 PF00270 DEAD: DEAD/DEAH box h 99.8 2.2E-20 4.7E-25 166.9 15.9 155 40-207 1-166 (169)
112 KOG4150 Predicted ATP-dependen 99.8 2.2E-20 4.8E-25 183.5 16.9 325 34-365 282-640 (1034)
113 KOG0923 mRNA splicing factor A 99.8 4.7E-20 1E-24 184.3 18.6 300 39-365 266-606 (902)
114 COG0556 UvrB Helicase subunit 99.8 1.9E-18 4E-23 169.8 28.6 164 194-365 387-557 (663)
115 KOG0949 Predicted helicase, DE 99.8 2.4E-19 5.3E-24 185.8 23.4 323 39-375 512-1056(1330)
116 PRK13103 secA preprotein trans 99.8 5.8E-19 1.3E-23 186.8 26.8 321 28-367 73-593 (913)
117 KOG0924 mRNA splicing factor A 99.8 4.7E-20 1E-24 184.6 14.7 299 41-365 359-697 (1042)
118 PRK12903 secA preprotein trans 99.8 1.9E-18 4.1E-23 181.1 27.1 322 27-367 68-541 (925)
119 TIGR00348 hsdR type I site-spe 99.8 2.5E-18 5.4E-23 184.1 28.6 294 39-351 239-633 (667)
120 TIGR01407 dinG_rel DnaQ family 99.8 2.2E-18 4.7E-23 190.1 29.0 179 195-377 597-828 (850)
121 KOG0385 Chromatin remodeling c 99.8 2.6E-18 5.6E-23 174.6 24.0 307 37-361 166-593 (971)
122 CHL00122 secA preprotein trans 99.8 2.1E-17 4.6E-22 174.3 28.9 283 26-325 65-491 (870)
123 KOG0926 DEAH-box RNA helicase 99.8 7.1E-19 1.5E-23 179.0 15.2 301 44-365 262-704 (1172)
124 cd00079 HELICc Helicase superf 99.8 2.3E-18 4.9E-23 146.8 14.5 118 244-361 12-131 (131)
125 KOG0953 Mitochondrial RNA heli 99.8 1.9E-17 4.1E-22 163.2 21.5 282 54-377 192-488 (700)
126 KOG0920 ATP-dependent RNA heli 99.8 4.9E-18 1.1E-22 180.4 16.6 308 39-369 174-548 (924)
127 PF00271 Helicase_C: Helicase 99.8 1.3E-18 2.9E-23 134.2 9.1 78 276-353 1-78 (78)
128 COG4096 HsdR Type I site-speci 99.8 9.8E-18 2.1E-22 173.2 16.7 292 37-351 164-524 (875)
129 PRK12902 secA preprotein trans 99.8 1.3E-15 2.8E-20 160.6 32.5 281 28-325 76-506 (939)
130 KOG0387 Transcription-coupled 99.8 8.2E-17 1.8E-21 164.6 22.0 325 37-375 204-671 (923)
131 PRK07246 bifunctional ATP-depe 99.7 8.3E-16 1.8E-20 167.6 29.9 181 195-378 575-798 (820)
132 KOG0384 Chromodomain-helicase 99.7 1.5E-16 3.2E-21 169.3 19.2 316 37-365 369-811 (1373)
133 KOG0390 DNA repair protein, SN 99.7 1.2E-15 2.7E-20 159.7 23.2 311 38-361 238-701 (776)
134 PRK14873 primosome assembly pr 99.7 6.6E-15 1.4E-19 155.9 27.9 289 59-375 166-548 (665)
135 KOG0389 SNF2 family DNA-depend 99.7 2.3E-15 5E-20 153.9 21.5 322 35-368 397-891 (941)
136 PRK08074 bifunctional ATP-depe 99.7 4.4E-14 9.5E-19 156.9 33.2 184 195-378 674-908 (928)
137 KOG0925 mRNA splicing factor A 99.7 6E-15 1.3E-19 143.4 22.3 325 12-365 22-387 (699)
138 KOG1123 RNA polymerase II tran 99.7 4.2E-16 9.1E-21 151.8 11.2 289 37-353 301-635 (776)
139 smart00487 DEXDc DEAD-like hel 99.6 6E-15 1.3E-19 134.5 16.3 165 34-215 4-182 (201)
140 smart00490 HELICc helicase sup 99.6 1.7E-15 3.7E-20 117.6 9.4 81 273-353 2-82 (82)
141 KOG0951 RNA helicase BRR2, DEA 99.6 9.6E-15 2.1E-19 155.5 17.5 312 38-379 1143-1508(1674)
142 TIGR03117 cas_csf4 CRISPR-asso 99.6 5.1E-13 1.1E-17 139.9 29.4 168 195-365 373-616 (636)
143 PRK12901 secA preprotein trans 99.6 3.3E-13 7.1E-18 144.1 25.3 122 244-367 612-743 (1112)
144 PRK11747 dinG ATP-dependent DN 99.6 2.1E-12 4.6E-17 139.2 30.1 164 196-365 459-674 (697)
145 PF04851 ResIII: Type III rest 99.6 1.2E-14 2.6E-19 131.3 9.3 157 38-205 3-184 (184)
146 COG4889 Predicted helicase [Ge 99.5 1.9E-14 4.2E-19 148.2 10.8 302 37-352 160-572 (1518)
147 COG1199 DinG Rad3-related DNA 99.5 1.2E-12 2.5E-17 141.9 25.2 167 195-365 405-617 (654)
148 TIGR00604 rad3 DNA repair heli 99.5 7E-12 1.5E-16 136.2 28.3 70 32-101 4-83 (705)
149 KOG1000 Chromatin remodeling p 99.5 1.2E-12 2.6E-17 127.9 19.6 305 37-362 197-598 (689)
150 KOG0386 Chromatin remodeling c 99.5 9.9E-13 2.1E-17 138.0 15.3 321 38-375 394-846 (1157)
151 KOG0392 SNF2 family DNA-depend 99.5 5.4E-12 1.2E-16 134.7 20.7 306 38-361 975-1448(1549)
152 cd00046 DEXDc DEAD-like helica 99.4 6.7E-12 1.5E-16 107.5 12.6 135 54-203 1-144 (144)
153 TIGR02562 cas3_yersinia CRISPR 99.4 5.4E-11 1.2E-15 128.0 21.4 91 261-354 759-881 (1110)
154 COG0653 SecA Preprotein transl 99.3 1.6E-10 3.5E-15 122.1 21.8 323 28-367 71-547 (822)
155 KOG0388 SNF2 family DNA-depend 99.2 3.5E-10 7.6E-15 115.0 17.5 105 257-361 1043-1148(1185)
156 KOG0391 SNF2 family DNA-depend 99.2 1.8E-09 3.9E-14 114.9 21.9 121 257-377 1275-1397(1958)
157 PF02399 Herpes_ori_bp: Origin 99.2 3.5E-09 7.5E-14 111.6 21.5 281 56-365 52-388 (824)
158 KOG4439 RNA polymerase II tran 99.1 4.3E-09 9.4E-14 107.3 19.8 104 258-361 746-852 (901)
159 KOG1002 Nucleotide excision re 99.1 3.8E-09 8.2E-14 103.7 17.0 111 257-367 637-751 (791)
160 COG0553 HepA Superfamily II DN 99.1 1.2E-08 2.6E-13 114.6 23.5 117 245-361 693-816 (866)
161 PF06862 DUF1253: Protein of u 99.0 1.8E-07 3.9E-12 93.9 23.8 298 78-376 37-426 (442)
162 KOG1015 Transcription regulato 99.0 2.8E-08 6.1E-13 104.2 17.3 113 249-361 1131-1271(1567)
163 PF07652 Flavi_DEAD: Flaviviru 98.9 1.8E-09 3.8E-14 90.7 6.6 132 53-207 4-140 (148)
164 PF00176 SNF2_N: SNF2 family N 98.9 5.7E-09 1.2E-13 101.9 10.5 159 42-218 1-187 (299)
165 COG0610 Type I site-specific r 98.9 3.9E-07 8.4E-12 101.5 23.3 282 54-352 274-636 (962)
166 PF07517 SecA_DEAD: SecA DEAD- 98.8 5.8E-08 1.2E-12 91.7 11.0 133 28-171 68-210 (266)
167 smart00489 DEXDc3 DEAD-like he 98.5 9.7E-07 2.1E-11 85.5 11.2 69 34-103 5-86 (289)
168 smart00488 DEXDc2 DEAD-like he 98.5 9.7E-07 2.1E-11 85.5 11.2 69 34-103 5-86 (289)
169 KOG0952 DNA/RNA helicase MER3/ 98.4 1.8E-08 3.9E-13 107.2 -2.1 222 38-278 927-1173(1230)
170 KOG0921 Dosage compensation co 98.4 1E-06 2.2E-11 92.6 9.3 296 44-365 384-774 (1282)
171 TIGR00596 rad1 DNA repair prot 98.4 2.4E-05 5.2E-10 85.2 19.9 81 131-219 8-93 (814)
172 PF13307 Helicase_C_2: Helicas 98.3 1.9E-06 4.2E-11 76.4 7.9 112 250-364 2-149 (167)
173 KOG2340 Uncharacterized conser 98.2 2.2E-05 4.8E-10 78.5 13.9 118 258-375 552-678 (698)
174 PRK15483 type III restriction- 98.1 2.7E-05 5.9E-10 85.0 13.0 45 308-352 501-545 (986)
175 PF13872 AAA_34: P-loop contai 97.9 8.8E-05 1.9E-09 70.6 10.4 163 38-207 37-224 (303)
176 PF13604 AAA_30: AAA domain; P 97.7 9E-05 1.9E-09 67.6 7.4 59 38-96 1-64 (196)
177 PF13086 AAA_11: AAA domain; P 97.6 0.00011 2.4E-09 68.7 6.8 63 38-100 1-75 (236)
178 KOG1803 DNA helicase [Replicat 97.6 0.00024 5.2E-09 72.7 9.3 63 37-99 184-250 (649)
179 PF02562 PhoH: PhoH-like prote 97.6 7.4E-05 1.6E-09 67.9 5.0 54 37-90 3-61 (205)
180 COG3587 Restriction endonuclea 97.6 0.0022 4.8E-08 68.2 15.5 71 307-377 482-565 (985)
181 KOG1016 Predicted DNA helicase 97.5 0.0027 5.9E-08 66.6 15.6 109 258-366 719-848 (1387)
182 smart00492 HELICc3 helicase su 97.5 0.0012 2.5E-08 56.7 10.3 93 271-363 4-136 (141)
183 PF13245 AAA_19: Part of AAA d 97.5 0.00029 6.3E-09 53.4 5.8 53 46-98 2-62 (76)
184 PRK10536 hypothetical protein; 97.5 0.0013 2.8E-08 61.6 11.2 56 35-90 56-116 (262)
185 smart00491 HELICc2 helicase su 97.4 0.0013 2.9E-08 56.4 9.4 93 271-363 4-137 (142)
186 KOG1805 DNA replication helica 97.4 0.0013 2.9E-08 70.7 11.1 127 38-172 669-810 (1100)
187 TIGR01448 recD_rel helicase, p 97.4 0.0016 3.4E-08 71.1 12.2 64 29-93 315-383 (720)
188 PF09848 DUF2075: Uncharacteri 97.4 0.00065 1.4E-08 68.0 8.6 45 56-100 4-53 (352)
189 PRK10875 recD exonuclease V su 97.2 0.0033 7.1E-08 67.0 11.8 76 24-99 137-220 (615)
190 PF12340 DUF3638: Protein of u 97.2 0.0079 1.7E-07 55.3 12.7 81 15-100 3-91 (229)
191 KOG1802 RNA helicase nonsense 97.1 0.001 2.2E-08 68.6 6.9 81 29-110 402-486 (935)
192 TIGR01447 recD exodeoxyribonuc 97.1 0.0066 1.4E-07 64.5 13.0 61 40-100 147-215 (586)
193 PF13401 AAA_22: AAA domain; P 97.0 0.0017 3.6E-08 54.8 6.6 18 53-70 4-21 (131)
194 PRK12723 flagellar biosynthesi 97.0 0.021 4.6E-07 57.4 14.5 124 54-216 175-310 (388)
195 COG1875 NYN ribonuclease and A 96.9 0.0059 1.3E-07 59.2 9.6 64 29-92 219-290 (436)
196 PRK08181 transposase; Validate 96.9 0.01 2.2E-07 56.7 10.9 53 40-93 89-148 (269)
197 TIGR00376 DNA helicase, putati 96.8 0.0048 1E-07 66.4 9.5 73 37-109 156-232 (637)
198 cd00009 AAA The AAA+ (ATPases 96.8 0.022 4.7E-07 48.3 12.0 18 53-70 19-36 (151)
199 PF13871 Helicase_C_4: Helicas 96.8 0.0039 8.5E-08 59.2 7.6 59 299-357 52-118 (278)
200 PRK06526 transposase; Provisio 96.7 0.0096 2.1E-07 56.5 9.5 42 51-93 96-140 (254)
201 KOG1132 Helicase of the DEAD s 96.7 0.0078 1.7E-07 64.4 9.1 78 259-337 562-656 (945)
202 PF05970 PIF1: PIF1-like helic 96.6 0.0033 7.3E-08 63.1 5.9 55 38-92 1-64 (364)
203 PF00580 UvrD-helicase: UvrD/R 96.6 0.003 6.5E-08 61.9 5.1 60 39-100 1-67 (315)
204 KOG0383 Predicted helicase [Ge 96.5 0.00081 1.8E-08 71.2 0.8 64 257-321 630-696 (696)
205 PRK04296 thymidine kinase; Pro 96.5 0.0044 9.6E-08 56.2 5.5 32 55-86 4-38 (190)
206 COG2256 MGS1 ATPase related to 96.5 0.012 2.5E-07 58.1 8.3 38 159-205 105-142 (436)
207 PRK08084 DNA replication initi 96.5 0.083 1.8E-06 49.6 14.0 17 54-70 46-62 (235)
208 PRK08727 hypothetical protein; 96.4 0.027 5.8E-07 52.8 10.5 16 54-69 42-57 (233)
209 PRK14956 DNA polymerase III su 96.4 0.034 7.4E-07 57.1 11.3 19 55-73 42-60 (484)
210 PRK05703 flhF flagellar biosyn 96.3 0.48 1E-05 48.6 19.7 55 158-216 299-355 (424)
211 PRK06893 DNA replication initi 96.3 0.016 3.5E-07 54.2 8.3 47 158-208 91-139 (229)
212 cd01122 GP4d_helicase GP4d_hel 96.3 0.027 5.8E-07 54.1 10.1 120 50-172 27-154 (271)
213 smart00382 AAA ATPases associa 96.3 0.0084 1.8E-07 50.5 5.9 38 53-90 2-42 (148)
214 PF13173 AAA_14: AAA domain 96.3 0.025 5.5E-07 47.6 8.6 40 158-205 61-100 (128)
215 PF00448 SRP54: SRP54-type pro 96.3 0.064 1.4E-06 48.8 11.7 57 155-215 80-137 (196)
216 PRK11889 flhF flagellar biosyn 96.3 0.12 2.5E-06 51.8 14.2 55 158-216 320-375 (436)
217 PRK14974 cell division protein 96.2 0.25 5.4E-06 48.8 15.9 53 157-213 221-274 (336)
218 cd01120 RecA-like_NTPases RecA 96.1 0.1 2.2E-06 45.3 12.1 34 56-89 2-38 (165)
219 PLN03025 replication factor C 96.1 0.056 1.2E-06 53.3 11.4 44 158-207 99-142 (319)
220 PF05621 TniB: Bacterial TniB 96.1 0.092 2E-06 50.4 12.0 17 54-70 62-78 (302)
221 PRK12377 putative replication 96.1 0.041 8.9E-07 51.9 9.6 40 54-93 102-143 (248)
222 PRK06921 hypothetical protein; 96.0 0.14 3E-06 49.0 13.1 41 53-93 117-160 (266)
223 COG1110 Reverse gyrase [DNA re 95.9 0.033 7.2E-07 60.8 9.0 92 243-334 110-211 (1187)
224 PRK06835 DNA replication prote 95.9 0.13 2.7E-06 50.8 12.5 41 53-93 183-225 (329)
225 cd01124 KaiC KaiC is a circadi 95.9 0.096 2.1E-06 47.0 10.9 47 56-103 2-51 (187)
226 PRK14949 DNA polymerase III su 95.9 0.067 1.5E-06 58.7 11.2 45 157-207 118-162 (944)
227 PTZ00112 origin recognition co 95.8 0.28 6E-06 53.8 15.2 16 55-70 782-798 (1164)
228 PF00004 AAA: ATPase family as 95.7 0.044 9.5E-07 45.9 7.5 16 56-71 1-16 (132)
229 TIGR02881 spore_V_K stage V sp 95.7 0.087 1.9E-06 50.3 10.3 18 54-71 43-60 (261)
230 KOG1133 Helicase of the DEAD s 95.7 0.26 5.7E-06 51.8 14.1 117 244-364 612-779 (821)
231 PRK05973 replicative DNA helic 95.7 0.28 6.1E-06 45.8 13.3 86 16-103 19-116 (237)
232 COG1484 DnaC DNA replication p 95.7 0.046 9.9E-07 51.9 8.2 63 35-97 80-151 (254)
233 KOG0989 Replication factor C, 95.7 0.029 6.3E-07 53.3 6.6 34 42-75 40-79 (346)
234 PRK10917 ATP-dependent DNA hel 95.7 0.034 7.3E-07 60.7 8.3 76 257-332 309-389 (681)
235 PF01695 IstB_IS21: IstB-like 95.7 0.015 3.4E-07 52.0 4.7 41 52-93 46-89 (178)
236 PRK08116 hypothetical protein; 95.7 0.18 3.9E-06 48.3 12.3 39 55-93 116-156 (268)
237 PRK05580 primosome assembly pr 95.6 0.081 1.8E-06 57.7 10.9 77 257-334 189-266 (679)
238 PRK07952 DNA replication prote 95.6 0.23 5.1E-06 46.7 12.5 40 54-93 100-141 (244)
239 cd01126 TraG_VirD4 The TraG/Tr 95.6 0.011 2.4E-07 59.9 3.8 56 55-110 1-57 (384)
240 COG1222 RPT1 ATP-dependent 26S 95.6 0.1 2.3E-06 50.8 9.9 55 13-70 146-202 (406)
241 PRK08903 DnaA regulatory inact 95.4 0.12 2.6E-06 48.2 9.8 17 53-69 42-58 (227)
242 COG1474 CDC6 Cdc6-related prot 95.4 0.33 7.2E-06 48.6 13.4 17 54-70 43-59 (366)
243 PRK13341 recombination factor 95.4 0.15 3.3E-06 55.6 11.7 39 158-205 109-147 (725)
244 COG1419 FlhF Flagellar GTP-bin 95.3 0.56 1.2E-05 46.9 14.6 58 157-218 280-338 (407)
245 PRK14712 conjugal transfer nic 95.3 0.075 1.6E-06 62.1 9.6 56 38-93 835-899 (1623)
246 PRK07003 DNA polymerase III su 95.3 0.05 1.1E-06 58.6 7.6 44 157-206 118-161 (830)
247 PRK12724 flagellar biosynthesi 95.3 0.54 1.2E-05 47.6 14.4 122 55-216 225-357 (432)
248 PRK13342 recombination factor 95.2 0.079 1.7E-06 54.3 8.7 19 54-72 37-55 (413)
249 cd01121 Sms Sms (bacterial rad 95.2 0.22 4.9E-06 50.0 11.6 94 46-171 70-171 (372)
250 PRK04195 replication factor C 95.2 0.13 2.9E-06 53.7 10.5 19 53-71 39-57 (482)
251 TIGR00595 priA primosomal prot 95.2 0.12 2.7E-06 54.1 10.1 77 257-334 24-101 (505)
252 PRK14722 flhF flagellar biosyn 95.2 0.37 8E-06 48.2 12.9 55 157-215 214-269 (374)
253 TIGR02928 orc1/cdc6 family rep 95.1 0.2 4.4E-06 50.3 11.3 17 54-70 41-57 (365)
254 KOG0741 AAA+-type ATPase [Post 95.1 0.25 5.5E-06 50.5 11.3 52 156-207 596-653 (744)
255 cd00984 DnaB_C DnaB helicase C 95.1 0.23 5.1E-06 46.6 10.9 43 52-94 12-61 (242)
256 PRK12323 DNA polymerase III su 95.1 0.12 2.6E-06 54.9 9.5 51 156-212 122-172 (700)
257 PRK11823 DNA repair protein Ra 95.0 0.26 5.6E-06 50.9 11.6 95 46-172 68-170 (446)
258 PRK12422 chromosomal replicati 95.0 0.26 5.6E-06 50.9 11.6 47 158-207 202-248 (445)
259 PRK12727 flagellar biosynthesi 95.0 0.91 2E-05 47.3 15.3 55 157-215 427-481 (559)
260 TIGR00643 recG ATP-dependent D 95.0 0.067 1.5E-06 57.9 7.7 75 257-331 283-362 (630)
261 PRK05707 DNA polymerase III su 95.0 0.21 4.4E-06 49.4 10.4 33 38-70 3-39 (328)
262 PF02534 T4SS-DNA_transf: Type 95.0 0.02 4.2E-07 59.8 3.4 57 54-110 45-102 (469)
263 PRK05642 DNA replication initi 94.9 0.17 3.7E-06 47.4 9.4 45 158-206 97-142 (234)
264 PRK14964 DNA polymerase III su 94.9 0.52 1.1E-05 49.0 13.6 50 157-212 115-164 (491)
265 PRK14873 primosome assembly pr 94.9 0.21 4.6E-06 54.0 11.1 90 244-334 172-265 (665)
266 PRK13897 type IV secretion sys 94.9 0.026 5.6E-07 60.1 4.0 58 54-111 159-217 (606)
267 PHA02544 44 clamp loader, smal 94.8 0.5 1.1E-05 46.4 13.0 43 158-205 100-142 (316)
268 PRK06731 flhF flagellar biosyn 94.8 0.91 2E-05 43.4 14.1 55 157-215 153-208 (270)
269 PRK08769 DNA polymerase III su 94.8 0.27 6E-06 48.2 10.7 35 36-70 2-43 (319)
270 PRK06645 DNA polymerase III su 94.7 0.34 7.3E-06 50.7 11.8 20 54-73 44-63 (507)
271 PRK13826 Dtr system oriT relax 94.7 0.33 7.2E-06 55.1 12.4 57 37-93 380-440 (1102)
272 PRK14961 DNA polymerase III su 94.7 0.28 6E-06 49.3 10.9 17 55-71 40-56 (363)
273 CHL00176 ftsH cell division pr 94.7 0.48 1E-05 51.1 13.1 18 54-71 217-234 (638)
274 TIGR02760 TraI_TIGR conjugativ 94.7 1.8 3.9E-05 52.9 19.1 56 38-93 429-489 (1960)
275 KOG0734 AAA+-type ATPase conta 94.6 0.26 5.6E-06 50.5 10.1 64 146-209 384-453 (752)
276 PRK00411 cdc6 cell division co 94.6 0.85 1.8E-05 46.3 14.3 17 54-70 56-72 (394)
277 PRK13889 conjugal transfer rel 94.6 1.7 3.7E-05 49.1 17.5 57 35-92 344-404 (988)
278 KOG2028 ATPase related to the 94.6 0.17 3.7E-06 49.4 8.3 22 54-75 163-184 (554)
279 PRK08691 DNA polymerase III su 94.6 0.36 7.9E-06 51.9 11.7 18 55-72 40-57 (709)
280 TIGR02768 TraA_Ti Ti-type conj 94.5 1.2 2.7E-05 49.1 16.1 56 38-93 352-411 (744)
281 PRK00149 dnaA chromosomal repl 94.5 0.38 8.3E-06 49.9 11.7 17 54-70 149-165 (450)
282 PRK05563 DNA polymerase III su 94.5 0.17 3.8E-06 53.7 9.2 19 54-72 39-57 (559)
283 KOG0739 AAA+-type ATPase [Post 94.5 0.49 1.1E-05 45.1 10.9 119 48-212 156-286 (439)
284 TIGR03600 phage_DnaB phage rep 94.5 0.48 1E-05 48.7 12.2 147 53-203 194-354 (421)
285 TIGR03420 DnaA_homol_Hda DnaA 94.5 0.2 4.4E-06 46.4 8.7 18 53-70 38-55 (226)
286 PRK07764 DNA polymerase III su 94.4 0.24 5.3E-06 54.8 10.4 44 157-206 119-162 (824)
287 PRK08533 flagellar accessory p 94.4 0.83 1.8E-05 42.7 12.5 51 52-103 23-76 (230)
288 PF03354 Terminase_1: Phage Te 94.4 0.23 5E-06 51.9 9.7 61 41-101 1-77 (477)
289 TIGR01241 FtsH_fam ATP-depende 94.3 0.45 9.6E-06 50.0 11.8 18 54-71 89-106 (495)
290 PRK13850 type IV secretion sys 94.3 0.048 1E-06 58.8 4.5 57 54-110 140-197 (670)
291 TIGR03015 pepcterm_ATPase puta 94.3 0.44 9.5E-06 45.5 10.9 31 41-71 26-61 (269)
292 TIGR02760 TraI_TIGR conjugativ 94.3 0.18 3.9E-06 61.2 9.6 57 37-93 1018-1083(1960)
293 PF05496 RuvB_N: Holliday junc 94.2 0.098 2.1E-06 48.1 5.7 18 55-72 52-69 (233)
294 COG1444 Predicted P-loop ATPas 94.2 0.42 9.1E-06 51.7 11.2 133 38-204 214-357 (758)
295 PRK13709 conjugal transfer nic 94.2 0.21 4.5E-06 59.3 9.6 64 38-105 967-1039(1747)
296 PRK14948 DNA polymerase III su 94.2 0.61 1.3E-05 50.2 12.5 19 54-72 39-57 (620)
297 PRK06904 replicative DNA helic 94.1 1.2 2.7E-05 46.3 14.3 145 54-201 222-382 (472)
298 PF00308 Bac_DnaA: Bacterial d 94.1 0.27 5.8E-06 45.6 8.6 54 158-215 97-155 (219)
299 TIGR01243 CDC48 AAA family ATP 94.1 0.57 1.2E-05 51.8 12.5 21 54-74 488-508 (733)
300 TIGR00362 DnaA chromosomal rep 94.1 0.38 8.3E-06 49.1 10.4 16 55-70 138-153 (405)
301 PRK14958 DNA polymerase III su 94.0 0.41 8.8E-06 50.3 10.6 43 156-204 117-159 (509)
302 PRK14962 DNA polymerase III su 94.0 0.41 8.8E-06 49.8 10.5 18 55-72 38-55 (472)
303 PRK10919 ATP-dependent DNA hel 94.0 0.087 1.9E-06 57.4 5.9 62 38-101 2-70 (672)
304 PF03796 DnaB_C: DnaB-like hel 94.0 0.12 2.6E-06 49.3 6.2 140 55-203 21-180 (259)
305 PRK09183 transposase/IS protei 94.0 0.66 1.4E-05 44.2 11.1 43 50-93 99-144 (259)
306 PRK14960 DNA polymerase III su 93.9 0.38 8.3E-06 51.4 10.0 44 157-206 117-160 (702)
307 PRK08840 replicative DNA helic 93.8 0.81 1.8E-05 47.5 12.3 145 54-201 218-377 (464)
308 PRK14952 DNA polymerase III su 93.8 0.82 1.8E-05 48.7 12.4 49 156-210 116-164 (584)
309 CHL00181 cbbX CbbX; Provisiona 93.8 0.96 2.1E-05 43.8 12.0 18 54-71 60-77 (287)
310 PRK11034 clpA ATP-dependent Cl 93.8 0.57 1.2E-05 51.6 11.5 19 53-71 207-225 (758)
311 PTZ00454 26S protease regulato 93.7 0.79 1.7E-05 46.5 11.7 20 53-72 179-198 (398)
312 KOG0738 AAA+-type ATPase [Post 93.7 1.5 3.2E-05 43.5 12.8 60 11-70 179-262 (491)
313 PRK14959 DNA polymerase III su 93.7 0.54 1.2E-05 50.1 10.8 47 156-208 117-163 (624)
314 PRK14088 dnaA chromosomal repl 93.7 0.55 1.2E-05 48.4 10.8 17 54-70 131-147 (440)
315 PRK13822 conjugal transfer cou 93.7 0.078 1.7E-06 57.0 4.7 59 54-112 225-284 (641)
316 PRK10416 signal recognition pa 93.7 2.6 5.6E-05 41.4 14.9 54 157-214 195-255 (318)
317 TIGR00580 mfd transcription-re 93.6 0.2 4.4E-06 56.2 7.9 76 257-332 499-579 (926)
318 PRK07994 DNA polymerase III su 93.6 0.71 1.5E-05 49.6 11.6 45 156-206 117-161 (647)
319 PHA02533 17 large terminase pr 93.6 1.9 4E-05 45.6 14.6 63 38-100 59-126 (534)
320 PRK14087 dnaA chromosomal repl 93.6 0.87 1.9E-05 47.1 12.0 44 54-98 142-190 (450)
321 PRK05748 replicative DNA helic 93.6 0.35 7.6E-06 50.1 9.1 146 54-203 204-365 (448)
322 PRK12402 replication factor C 93.5 1.4 3E-05 43.6 13.1 17 55-71 38-54 (337)
323 PRK08760 replicative DNA helic 93.5 0.27 5.8E-06 51.2 8.1 145 55-202 231-388 (476)
324 TIGR01075 uvrD DNA helicase II 93.4 0.11 2.3E-06 57.3 5.4 63 37-101 3-72 (715)
325 PRK08939 primosomal protein Dn 93.4 0.24 5.3E-06 48.4 7.2 17 53-69 156-172 (306)
326 PRK03992 proteasome-activating 93.3 0.99 2.1E-05 45.8 11.7 18 54-71 166-183 (389)
327 TIGR01243 CDC48 AAA family ATP 93.3 0.45 9.8E-06 52.6 10.0 19 53-71 212-230 (733)
328 TIGR02639 ClpA ATP-dependent C 93.3 0.63 1.4E-05 51.4 11.1 17 54-70 204-220 (731)
329 KOG0298 DEAD box-containing he 93.3 0.13 2.8E-06 57.6 5.5 148 53-215 374-561 (1394)
330 PRK05595 replicative DNA helic 93.3 0.37 7.9E-06 49.9 8.7 145 55-203 203-361 (444)
331 TIGR02767 TraG-Ti Ti-type conj 93.2 0.12 2.6E-06 55.3 5.1 57 54-110 212-270 (623)
332 PF06745 KaiC: KaiC; InterPro 93.2 0.37 7.9E-06 44.8 8.0 100 53-170 19-127 (226)
333 PRK14969 DNA polymerase III su 93.2 0.63 1.4E-05 49.2 10.5 18 55-72 40-57 (527)
334 COG4185 Uncharacterized protei 93.2 0.2 4.3E-06 43.2 5.4 36 57-93 6-41 (187)
335 PRK11773 uvrD DNA-dependent he 93.2 0.13 2.7E-06 56.8 5.4 63 37-101 8-77 (721)
336 PRK05986 cob(I)alamin adenolsy 93.2 0.49 1.1E-05 42.5 8.1 134 52-207 21-161 (191)
337 PRK06067 flagellar accessory p 93.2 2.5 5.4E-05 39.4 13.6 102 53-172 25-134 (234)
338 cd00561 CobA_CobO_BtuR ATP:cor 93.2 0.52 1.1E-05 41.1 8.1 53 151-206 88-140 (159)
339 TIGR00708 cobA cob(I)alamin ad 93.1 0.41 8.9E-06 42.3 7.5 53 151-206 90-142 (173)
340 COG1198 PriA Primosomal protei 93.1 0.27 5.8E-06 53.3 7.6 73 245-317 230-305 (730)
341 PRK07133 DNA polymerase III su 93.1 0.66 1.4E-05 50.3 10.5 44 156-205 116-159 (725)
342 COG0464 SpoVK ATPases of the A 93.1 1.2 2.6E-05 46.8 12.4 39 54-93 277-315 (494)
343 TIGR00064 ftsY signal recognit 93.0 3.8 8.3E-05 39.3 14.7 53 157-213 153-212 (272)
344 PRK08006 replicative DNA helic 93.0 1.3 2.8E-05 46.1 12.2 145 55-202 226-385 (471)
345 PRK05896 DNA polymerase III su 92.9 1.1 2.3E-05 47.7 11.5 44 158-207 119-162 (605)
346 PF13481 AAA_25: AAA domain; P 92.9 0.71 1.5E-05 41.6 9.2 138 52-200 31-186 (193)
347 PRK13876 conjugal transfer cou 92.9 0.098 2.1E-06 56.4 4.0 55 54-109 145-200 (663)
348 PRK00771 signal recognition pa 92.9 3.3 7.1E-05 42.6 14.8 48 159-210 176-224 (437)
349 TIGR03878 thermo_KaiC_2 KaiC d 92.9 0.78 1.7E-05 43.7 9.7 33 53-85 36-71 (259)
350 PRK14721 flhF flagellar biosyn 92.9 2.7 6E-05 42.8 14.0 57 156-216 267-324 (420)
351 COG2255 RuvB Holliday junction 92.9 0.29 6.3E-06 46.3 6.4 43 28-70 23-69 (332)
352 PRK09111 DNA polymerase III su 92.8 1.6 3.4E-05 46.8 12.8 44 156-205 130-173 (598)
353 PRK14951 DNA polymerase III su 92.8 0.64 1.4E-05 49.8 9.7 46 156-207 122-167 (618)
354 PRK12726 flagellar biosynthesi 92.7 2.6 5.7E-05 42.2 13.2 53 157-213 284-337 (407)
355 TIGR02880 cbbX_cfxQ probable R 92.7 0.81 1.8E-05 44.2 9.7 17 54-70 59-75 (284)
356 PRK10689 transcription-repair 92.7 0.34 7.4E-06 55.7 8.1 76 257-332 648-728 (1147)
357 cd03115 SRP The signal recogni 92.6 6.9 0.00015 34.4 15.2 49 157-209 81-130 (173)
358 PHA02542 41 41 helicase; Provi 92.5 1.5 3.2E-05 45.7 11.8 42 44-85 176-225 (473)
359 TIGR01074 rep ATP-dependent DN 92.5 0.21 4.6E-06 54.6 5.9 61 38-100 1-68 (664)
360 PRK09165 replicative DNA helic 92.4 0.54 1.2E-05 49.3 8.5 51 151-202 334-392 (497)
361 PRK13833 conjugal transfer pro 92.4 0.34 7.3E-06 47.6 6.6 53 38-90 128-186 (323)
362 PRK06871 DNA polymerase III su 92.4 1.1 2.4E-05 44.1 10.1 32 39-70 3-41 (325)
363 PRK06964 DNA polymerase III su 92.3 0.99 2.2E-05 44.7 9.8 33 39-71 2-39 (342)
364 COG4962 CpaF Flp pilus assembl 92.3 0.35 7.6E-06 47.1 6.4 56 35-90 154-212 (355)
365 TIGR00665 DnaB replicative DNA 92.3 0.7 1.5E-05 47.7 9.2 33 54-86 196-232 (434)
366 PRK11054 helD DNA helicase IV; 92.2 0.36 7.8E-06 52.5 7.2 62 37-100 195-263 (684)
367 KOG0701 dsRNA-specific nucleas 92.2 0.11 2.4E-06 60.3 3.3 95 259-353 293-399 (1606)
368 CHL00195 ycf46 Ycf46; Provisio 92.2 0.98 2.1E-05 47.1 10.0 17 54-70 260-276 (489)
369 PRK14701 reverse gyrase; Provi 92.2 0.57 1.2E-05 55.8 9.2 62 257-318 121-188 (1638)
370 KOG1001 Helicase-like transcri 92.1 0.5 1.1E-05 51.0 8.0 99 260-358 541-641 (674)
371 TIGR03877 thermo_KaiC_1 KaiC d 92.1 1.7 3.7E-05 40.7 10.9 50 53-103 21-73 (237)
372 PF05876 Terminase_GpA: Phage 92.1 0.39 8.4E-06 51.1 7.1 60 38-97 16-81 (557)
373 TIGR02655 circ_KaiC circadian 92.1 0.74 1.6E-05 48.2 9.2 109 45-171 250-366 (484)
374 COG0513 SrmB Superfamily II DN 92.1 0.57 1.2E-05 49.4 8.3 68 261-332 102-180 (513)
375 KOG1133 Helicase of the DEAD s 92.1 0.2 4.3E-06 52.7 4.7 38 34-71 10-52 (821)
376 COG1219 ClpX ATP-dependent pro 92.1 0.11 2.3E-06 49.9 2.6 18 54-71 98-115 (408)
377 TIGR00678 holB DNA polymerase 92.0 1.7 3.8E-05 39.0 10.5 41 156-202 94-134 (188)
378 TIGR01242 26Sp45 26S proteasom 92.0 1.2 2.5E-05 44.9 10.3 19 54-72 157-175 (364)
379 PTZ00361 26 proteosome regulat 91.9 1.2 2.6E-05 45.7 10.2 20 53-72 217-236 (438)
380 PHA03368 DNA packaging termina 91.9 1.4 3E-05 47.0 10.6 76 22-101 227-307 (738)
381 KOG1131 RNA polymerase II tran 91.9 0.6 1.3E-05 47.7 7.6 69 32-100 10-89 (755)
382 PRK05636 replicative DNA helic 91.9 0.75 1.6E-05 48.2 8.8 142 55-201 267-423 (505)
383 KOG0991 Replication factor C, 91.9 1 2.2E-05 41.4 8.4 18 54-71 49-66 (333)
384 PRK14955 DNA polymerase III su 91.8 1.1 2.5E-05 45.5 10.0 46 156-207 125-170 (397)
385 PHA03333 putative ATPase subun 91.8 3.2 6.9E-05 44.5 13.2 61 40-100 171-238 (752)
386 PRK14950 DNA polymerase III su 91.8 1.5 3.3E-05 47.1 11.3 41 157-203 119-159 (585)
387 PRK07940 DNA polymerase III su 91.8 1 2.2E-05 45.6 9.5 49 156-210 115-163 (394)
388 PF05127 Helicase_RecD: Helica 91.8 0.2 4.3E-06 44.5 3.9 42 57-98 1-46 (177)
389 TIGR01425 SRP54_euk signal rec 91.7 4.7 0.0001 41.2 14.1 47 158-208 182-229 (429)
390 PF13177 DNA_pol3_delta2: DNA 91.7 1.3 2.8E-05 38.9 9.0 50 157-212 101-150 (162)
391 PRK14723 flhF flagellar biosyn 91.7 5.1 0.00011 43.9 15.0 54 158-215 263-317 (767)
392 PRK14957 DNA polymerase III su 91.7 0.73 1.6E-05 48.6 8.6 42 156-203 117-158 (546)
393 PRK06321 replicative DNA helic 91.7 1.3 2.8E-05 46.1 10.3 155 45-203 214-389 (472)
394 TIGR01073 pcrA ATP-dependent D 91.7 0.27 5.7E-06 54.4 5.6 63 37-101 3-72 (726)
395 COG1200 RecG RecG-like helicas 91.6 0.95 2.1E-05 48.0 9.1 77 256-332 309-390 (677)
396 COG2805 PilT Tfp pilus assembl 91.6 0.14 3E-06 48.8 2.7 23 55-77 127-151 (353)
397 TIGR00959 ffh signal recogniti 91.6 6.8 0.00015 40.2 15.1 50 56-105 102-158 (428)
398 TIGR02785 addA_Gpos recombinat 91.5 0.32 6.9E-06 56.9 6.2 61 38-100 1-67 (1232)
399 PRK06090 DNA polymerase III su 91.5 1.5 3.3E-05 43.0 10.0 33 38-70 3-42 (319)
400 COG1435 Tdk Thymidine kinase [ 91.4 1 2.3E-05 40.3 7.9 33 55-87 6-41 (201)
401 KOG0347 RNA helicase [RNA proc 91.4 0.86 1.9E-05 46.9 8.2 54 259-316 264-321 (731)
402 PRK08506 replicative DNA helic 91.4 0.79 1.7E-05 47.8 8.4 144 54-202 193-351 (472)
403 PRK13894 conjugal transfer ATP 91.4 0.41 8.9E-06 47.0 5.9 53 38-90 132-190 (319)
404 PRK14963 DNA polymerase III su 91.4 0.94 2E-05 47.5 8.9 16 56-71 39-54 (504)
405 TIGR00416 sms DNA repair prote 91.3 2 4.4E-05 44.4 11.2 57 45-102 81-145 (454)
406 COG0593 DnaA ATPase involved i 91.3 2.7 5.9E-05 42.5 11.6 17 53-69 113-129 (408)
407 PRK10865 protein disaggregatio 91.2 1.6 3.6E-05 49.0 11.2 17 54-70 200-216 (857)
408 TIGR03499 FlhF flagellar biosy 91.2 1.1 2.3E-05 43.4 8.6 17 54-70 195-211 (282)
409 PRK13880 conjugal transfer cou 91.2 0.17 3.7E-06 54.6 3.3 56 54-109 176-233 (636)
410 PRK07004 replicative DNA helic 91.2 1.4 3E-05 45.8 9.8 143 54-202 214-373 (460)
411 PRK14953 DNA polymerase III su 91.1 1.9 4.1E-05 45.0 10.8 42 156-203 117-158 (486)
412 PRK00440 rfc replication facto 91.0 5.9 0.00013 38.7 14.0 16 55-70 40-55 (319)
413 PRK09112 DNA polymerase III su 91.0 4.5 9.7E-05 40.4 13.0 42 156-203 139-180 (351)
414 TIGR02782 TrbB_P P-type conjug 91.0 0.72 1.6E-05 44.9 7.2 53 38-90 116-174 (299)
415 PRK13851 type IV secretion sys 90.9 0.37 8.1E-06 47.8 5.2 41 50-90 159-201 (344)
416 PRK14086 dnaA chromosomal repl 90.9 2.4 5.2E-05 45.2 11.4 15 55-69 316-330 (617)
417 TIGR02237 recomb_radB DNA repa 90.9 1.4 3E-05 40.4 8.7 34 53-86 12-48 (209)
418 TIGR02640 gas_vesic_GvpN gas v 90.8 0.4 8.7E-06 45.8 5.2 41 44-84 12-52 (262)
419 PRK06995 flhF flagellar biosyn 90.8 10 0.00022 39.5 15.6 57 156-216 332-389 (484)
420 PHA00350 putative assembly pro 90.8 2 4.4E-05 43.3 10.3 24 56-79 4-31 (399)
421 COG3267 ExeA Type II secretory 90.7 2.5 5.5E-05 39.5 9.9 38 49-86 46-86 (269)
422 PRK07993 DNA polymerase III su 90.6 1.7 3.7E-05 43.0 9.5 34 38-71 2-42 (334)
423 PRK06749 replicative DNA helic 90.4 2.6 5.7E-05 43.3 11.0 32 55-86 188-222 (428)
424 PRK13900 type IV secretion sys 90.3 0.48 1E-05 46.9 5.4 35 50-84 157-193 (332)
425 COG2804 PulE Type II secretory 90.3 0.33 7.2E-06 49.7 4.3 31 39-69 242-274 (500)
426 PRK09087 hypothetical protein; 90.2 2.7 5.8E-05 39.1 10.0 17 54-70 45-61 (226)
427 PRK10733 hflB ATP-dependent me 90.2 3.6 7.7E-05 44.8 12.3 19 54-72 186-204 (644)
428 COG0470 HolB ATPase involved i 90.1 1.2 2.5E-05 43.8 8.1 42 157-204 108-149 (325)
429 TIGR03346 chaperone_ClpB ATP-d 90.0 2.2 4.7E-05 48.0 10.9 18 54-71 195-212 (852)
430 PRK00080 ruvB Holliday junctio 90.0 0.69 1.5E-05 45.8 6.3 18 54-71 52-69 (328)
431 TIGR00635 ruvB Holliday juncti 90.0 1.6 3.4E-05 42.6 8.8 17 54-70 31-47 (305)
432 PRK04328 hypothetical protein; 90.0 0.2 4.4E-06 47.4 2.4 50 53-103 23-75 (249)
433 PF05729 NACHT: NACHT domain 89.9 3.9 8.6E-05 35.2 10.5 44 160-203 83-130 (166)
434 TIGR03880 KaiC_arch_3 KaiC dom 89.9 3.5 7.6E-05 38.2 10.6 50 53-103 16-68 (224)
435 PRK14954 DNA polymerase III su 89.7 3.6 7.9E-05 44.2 11.7 42 156-203 125-166 (620)
436 KOG0733 Nuclear AAA ATPase (VC 89.7 2.5 5.4E-05 44.4 9.9 57 13-70 506-562 (802)
437 KOG0742 AAA+-type ATPase [Post 89.7 1.3 2.8E-05 44.1 7.5 17 54-70 385-401 (630)
438 KOG0339 ATP-dependent RNA heli 89.7 3 6.5E-05 42.7 10.2 70 258-331 296-375 (731)
439 PRK14965 DNA polymerase III su 89.6 2.2 4.7E-05 45.7 10.0 49 156-210 117-165 (576)
440 PRK08699 DNA polymerase III su 89.5 3.7 8.1E-05 40.5 10.9 33 39-71 2-39 (325)
441 TIGR00767 rho transcription te 89.5 1.1 2.4E-05 45.1 7.1 21 51-71 166-186 (415)
442 COG1223 Predicted ATPase (AAA+ 89.5 3.9 8.5E-05 38.4 10.1 39 54-94 152-191 (368)
443 PRK09376 rho transcription ter 89.5 1.2 2.6E-05 44.7 7.3 20 51-70 167-186 (416)
444 cd01130 VirB11-like_ATPase Typ 89.3 0.54 1.2E-05 42.3 4.5 33 38-70 9-42 (186)
445 CHL00095 clpC Clp protease ATP 89.3 2.4 5.2E-05 47.5 10.4 18 54-71 201-218 (821)
446 PRK10867 signal recognition pa 89.2 21 0.00045 36.7 16.3 49 56-104 103-158 (433)
447 KOG0730 AAA+-type ATPase [Post 89.2 4.7 0.0001 42.8 11.5 54 12-70 428-485 (693)
448 cd00983 recA RecA is a bacter 89.1 2.4 5.3E-05 41.6 9.1 47 46-92 42-97 (325)
449 cd00268 DEADc DEAD-box helicas 89.1 2.5 5.4E-05 38.3 8.9 72 257-332 68-149 (203)
450 PRK09354 recA recombinase A; P 89.1 3 6.4E-05 41.4 9.7 96 46-171 47-151 (349)
451 cd01128 rho_factor Transcripti 89.1 1.4 3E-05 41.6 7.3 21 50-70 13-33 (249)
452 PF10593 Z1: Z1 domain; Inter 89.0 3.4 7.4E-05 38.8 9.7 89 282-375 110-203 (239)
453 PF01443 Viral_helicase1: Vira 88.8 0.7 1.5E-05 43.0 5.1 14 56-69 1-14 (234)
454 TIGR00614 recQ_fam ATP-depende 88.6 1.3 2.8E-05 46.3 7.3 59 259-317 52-110 (470)
455 KOG0735 AAA+-type ATPase [Post 88.5 9.7 0.00021 41.0 13.2 55 15-70 664-718 (952)
456 TIGR01054 rgy reverse gyrase. 88.4 1.2 2.6E-05 51.6 7.3 78 257-334 120-207 (1171)
457 KOG1513 Nuclear helicase MOP-3 88.3 0.74 1.6E-05 49.3 5.1 76 301-376 850-936 (1300)
458 TIGR02397 dnaX_nterm DNA polym 88.2 5.4 0.00012 39.7 11.4 16 55-70 38-53 (355)
459 KOG0729 26S proteasome regulat 88.2 11 0.00023 35.6 12.0 78 13-93 172-250 (435)
460 PF00437 T2SE: Type II/IV secr 88.1 0.53 1.2E-05 45.1 3.8 40 51-90 125-167 (270)
461 COG2909 MalT ATP-dependent tra 88.1 2.3 4.9E-05 46.4 8.7 42 158-204 129-171 (894)
462 cd01394 radB RadB. The archaea 87.9 3.8 8.2E-05 37.7 9.3 39 46-84 7-53 (218)
463 PRK07773 replicative DNA helic 87.8 2.1 4.6E-05 48.4 8.8 145 55-203 219-377 (886)
464 KOG0733 Nuclear AAA ATPase (VC 87.7 5.6 0.00012 41.9 10.8 54 14-70 186-240 (802)
465 PF13671 AAA_33: AAA domain; P 87.5 5.2 0.00011 33.7 9.4 16 56-71 2-17 (143)
466 KOG0727 26S proteasome regulat 87.4 5.1 0.00011 37.4 9.4 44 147-191 237-286 (408)
467 PRK06305 DNA polymerase III su 87.3 4.4 9.6E-05 42.0 10.2 17 55-71 41-57 (451)
468 PRK11634 ATP-dependent RNA hel 87.3 2.3 5E-05 46.0 8.4 72 257-332 73-155 (629)
469 cd01129 PulE-GspE PulE/GspE Th 87.2 1.4 3E-05 42.2 6.0 32 39-70 64-97 (264)
470 KOG0726 26S proteasome regulat 87.2 4.5 9.7E-05 38.6 9.0 52 16-70 183-236 (440)
471 PF01637 Arch_ATPase: Archaeal 87.2 3.2 7E-05 38.1 8.5 17 53-69 20-36 (234)
472 PRK09361 radB DNA repair and r 87.1 4.5 9.8E-05 37.4 9.4 33 53-85 23-58 (225)
473 PRK09302 circadian clock prote 87.1 5.3 0.00012 42.1 11.0 102 53-172 273-377 (509)
474 KOG2543 Origin recognition com 87.1 3.2 7E-05 41.1 8.4 47 159-207 116-162 (438)
475 PF02572 CobA_CobO_BtuR: ATP:c 87.1 4.6 0.0001 35.7 8.7 131 56-206 6-141 (172)
476 PRK08058 DNA polymerase III su 87.0 4 8.7E-05 40.4 9.4 46 156-207 108-153 (329)
477 PRK14970 DNA polymerase III su 86.9 5 0.00011 40.3 10.3 16 55-70 41-56 (367)
478 TIGR02012 tigrfam_recA protein 86.8 4.5 9.8E-05 39.7 9.4 96 46-171 42-146 (321)
479 KOG1001 Helicase-like transcri 86.8 0.12 2.5E-06 55.7 -1.7 99 56-173 155-269 (674)
480 TIGR01389 recQ ATP-dependent D 86.7 2 4.3E-05 46.3 7.6 59 259-317 54-112 (591)
481 PRK08451 DNA polymerase III su 86.7 2.4 5.3E-05 44.6 7.9 41 157-203 116-156 (535)
482 PRK14971 DNA polymerase III su 86.5 4.1 8.9E-05 43.9 9.7 46 156-207 119-164 (614)
483 PRK10436 hypothetical protein; 86.4 1.3 2.9E-05 45.8 5.8 31 39-69 202-234 (462)
484 TIGR02688 conserved hypothetic 86.4 1.9 4.2E-05 43.6 6.7 51 21-71 170-227 (449)
485 COG0630 VirB11 Type IV secreto 86.3 2.2 4.7E-05 41.9 6.9 53 38-90 127-182 (312)
486 COG3598 RepA RecA-family ATPas 86.1 8.6 0.00019 37.4 10.4 145 41-203 76-242 (402)
487 PF01745 IPT: Isopentenyl tran 86.1 0.72 1.6E-05 42.0 3.2 28 56-83 4-31 (233)
488 KOG2170 ATPase of the AAA+ sup 86.0 3.9 8.5E-05 39.2 8.1 52 156-213 176-235 (344)
489 PRK06647 DNA polymerase III su 86.0 7.3 0.00016 41.5 11.2 43 156-204 117-159 (563)
490 TIGR03345 VI_ClpV1 type VI sec 86.0 7.2 0.00016 43.8 11.7 29 42-70 191-225 (852)
491 PF13555 AAA_29: P-loop contai 85.9 0.68 1.5E-05 33.3 2.4 18 53-70 23-40 (62)
492 COG0556 UvrB Helicase subunit 85.9 10 0.00023 39.3 11.4 81 77-169 445-525 (663)
493 PF12846 AAA_10: AAA-like doma 85.5 0.79 1.7E-05 44.3 3.5 36 53-88 1-39 (304)
494 COG2812 DnaX DNA polymerase II 85.5 0.85 1.8E-05 47.5 3.8 17 156-172 117-133 (515)
495 TIGR03345 VI_ClpV1 type VI sec 85.2 6.1 0.00013 44.4 10.6 15 56-70 599-613 (852)
496 PF01078 Mg_chelatase: Magnesi 85.2 0.93 2E-05 41.2 3.5 22 50-71 19-40 (206)
497 KOG0741 AAA+-type ATPase [Post 85.1 2.6 5.6E-05 43.5 6.8 46 22-70 226-273 (744)
498 PRK04841 transcriptional regul 85.0 14 0.00029 42.1 13.7 42 158-204 121-163 (903)
499 KOG0745 Putative ATP-dependent 84.6 0.9 1.9E-05 45.6 3.3 20 54-73 227-246 (564)
500 KOG1513 Nuclear helicase MOP-3 84.5 1.3 2.7E-05 47.7 4.5 166 38-205 264-456 (1300)
No 1
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.3e-85 Score=661.86 Aligned_cols=408 Identities=43% Similarity=0.734 Sum_probs=375.3
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc
Q 011387 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (487)
Q Consensus 25 ~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~ 104 (487)
.+...|+++||+++||+.|+++|.++++|+|+++++|||+|||+||++|++...|.+|||+|+.+||+||++.++..|+.
T Consensus 4 ~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~ 83 (590)
T COG0514 4 EAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIR 83 (590)
T ss_pred HHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCce
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHH
Q 011387 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (487)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l 184 (487)
+..++++.+.++...++..+..+. ++++|.+||.+.++.+++.+. ...+.++|||||||+++|||||||+|.++
T Consensus 84 A~~lnS~l~~~e~~~v~~~l~~g~--~klLyisPErl~~~~f~~~L~----~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l 157 (590)
T COG0514 84 AAYLNSTLSREERQQVLNQLKSGQ--LKLLYISPERLMSPRFLELLK----RLPISLVAIDEAHCISQWGHDFRPDYRRL 157 (590)
T ss_pred eehhhcccCHHHHHHHHHHHhcCc--eeEEEECchhhcChHHHHHHH----hCCCceEEechHHHHhhcCCccCHhHHHH
Confidence 999999999999999999998886 999999999999998887776 44699999999999999999999999999
Q ss_pred HHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEE
Q 011387 185 SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264 (487)
Q Consensus 185 ~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf 264 (487)
+.++..+|++|++++|||+++.++.||.+.|++..+.++..+++|||+++.++.+.....++..+.+ +....++++|||
T Consensus 158 g~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIY 236 (590)
T COG0514 158 GRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIY 236 (590)
T ss_pred HHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999988633334433332 225577789999
Q ss_pred ecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHH
Q 011387 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQ 344 (487)
Q Consensus 265 ~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Q 344 (487)
|.|++.+|.++++|++.|+.+..|||||+.++|+.++++|.+++++|+|||.|||||||+||||+||||++|.|+++|+|
T Consensus 237 c~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQ 316 (590)
T COG0514 237 CLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQ 316 (590)
T ss_pred EeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCceEEEEEecchHHHHHHHHHhcccCCCCcchhhHhhhHHHHHHHHHhhhc---ccchHHHHhcccCCCC
Q 011387 345 ESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV---AGKRFSRVLGNRYWDV 421 (487)
Q Consensus 345 r~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~crr~~i~~~~~~~~ 421 (487)
++|||||||.++.|+++|++.|....+++++.... ..+..+....++.+|+.| ..|||..+++
T Consensus 317 E~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~--------~~~~~~~~~~kl~~~~~~~e~~~crr~~ll~------ 382 (590)
T COG0514 317 ETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKP--------DEEQKQIELAKLRQMIAYCETQTCRRLVLLK------ 382 (590)
T ss_pred HHhhccCCCCcceEEEeeccccHHHHHHHHHhhcc--------hHHHHHHHHHHHHHHHHhcccccchHHHHHH------
Confidence 99999999999999999999999999999887543 344556677888889988 6699999999
Q ss_pred CCCCcccccccccccccccccCccCCCCCccCCCCCCCCChhhhHHHHHHHHH
Q 011387 422 WPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSA 474 (487)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~c~~~cd~c~~~~~~~~~~~~~~~~ 474 (487)
|| ||. ....|++ ||+|.++....+..++.++.
T Consensus 383 -----------------yf--ge~-~~~~c~~-c~~c~~~~~~~d~t~~a~~~ 414 (590)
T COG0514 383 -----------------YF--GED-EPEPCGN-CDNCLDTPKQFDGTIEAQKV 414 (590)
T ss_pred -----------------hc--Ccc-ccccccC-CCcccCcchhcchHHHHHHH
Confidence 99 998 6789996 99999988888877777665
No 2
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-81 Score=592.05 Aligned_cols=428 Identities=39% Similarity=0.689 Sum_probs=389.7
Q ss_pred hHHHHHHHHHHcCCCCCc-HHHHHHHHHHHcC-CCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHH
Q 011387 23 KEALVKLLRWHFGHAQFR-DKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 23 ~~~~~~~l~~~fg~~~~~-~~Q~~~i~~~l~~-~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
...+..+|++.||+++|. +.|+.++..+..+ +||.|+||||+||||||++|+|..++.+||++|+++|+.+|++.|..
T Consensus 4 Er~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~ 83 (641)
T KOG0352|consen 4 ERKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKR 83 (641)
T ss_pred HHHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHh
Confidence 345788999999999986 5999999998866 69999999999999999999999999999999999999999999999
Q ss_pred cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHH
Q 011387 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180 (487)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~ 180 (487)
+.+++..+++..+..++..+..++....+.++++|.|||..+|.+|...|..+.....|.++|||||||+++|||||||+
T Consensus 84 LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPD 163 (641)
T KOG0352|consen 84 LKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPD 163 (641)
T ss_pred cCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcc
Confidence 99999999999999999999999999999999999999999999999999888888899999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCe-EEecCCCCCcceEEEEeeCchhhHHHHHHHHHHhC---
Q 011387 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--- 256 (487)
Q Consensus 181 ~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~--- 256 (487)
|..|+.+++.++++|++++|||+++.+.+|+...|.+..|+ ++..+..|.|++|.+..+....+-+..|.++-...
T Consensus 164 YL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~ 243 (641)
T KOG0352|consen 164 YLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGK 243 (641)
T ss_pred hhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999988 56778889999999999988888888888775432
Q ss_pred ----------CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCC
Q 011387 257 ----------GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326 (487)
Q Consensus 257 ----------~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~ 326 (487)
..+++||||.|++.||+++-.|...|+++..||+|+...+|.++.++|++|++.||+||..||||+|+|+
T Consensus 244 ~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~ 323 (641)
T KOG0352|consen 244 HEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPD 323 (641)
T ss_pred hhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcc
Confidence 2468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcccCCCCcchhhHhhhHHHHHHHHHhhhc-
Q 011387 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV- 405 (487)
Q Consensus 327 v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 405 (487)
||+||||++|.++..|+|++|||||||.++.|-+||+..|...+.+++++...+... ....+...+..+..|.+|+.+
T Consensus 324 VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~aklre-k~~ke~~~k~~I~~F~k~~eFC 402 (641)
T KOG0352|consen 324 VRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAKLRE-KAKKEMQIKSIITGFAKMLEFC 402 (641)
T ss_pred eeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHHHHH-hcchhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998875432111 111223345667778888887
Q ss_pred --ccchHHHHhcccCCCCCCCCcccccccccccccccccCccCCCCCccCCCCCCCCChhhhHHHHHHHHHHHhh
Q 011387 406 --AGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQK 478 (487)
Q Consensus 406 --~~crr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~c~~~cd~c~~~~~~~~~~~~~~~~~~~~ 478 (487)
..||+..|.+ || |+..+ +|..+||.|..|....+.++-+.+.|++.
T Consensus 403 E~~~CRH~~ia~-----------------------fF--gD~~p--~ckg~cd~c~~p~k~~r~~e~f~~s~~s~ 450 (641)
T KOG0352|consen 403 ESARCRHVSIAS-----------------------FF--DDTEC--PCKTNCDYCRDPTKTIRNVEAFINSEAST 450 (641)
T ss_pred HHcccchHHHHH-----------------------hc--CCCCC--CCCCCccccCCHHHHHHHHHHHHHhhhhc
Confidence 8999999999 89 88765 78888999998888888888888887653
No 3
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.5e-79 Score=652.27 Aligned_cols=421 Identities=39% Similarity=0.674 Sum_probs=371.0
Q ss_pred cCC--CCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHH
Q 011387 16 KNK--PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (487)
Q Consensus 16 ~~~--~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q 93 (487)
+|. ++++...+...++.+||+++|||.|+++|++++.|+|++++||||+|||+||++|++...+.+|||+|+++|++|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqD 515 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQD 515 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHH
Confidence 354 688899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChh-hHHHHHhhhhcCCccEEEEeccccccc
Q 011387 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISS 172 (487)
Q Consensus 94 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~-~~~~l~~~~~~~~l~~lViDEah~~~~ 172 (487)
|+..+...|+.+..++++....+...+...+......++++|+|||.+.+.. ++..+........+.+||||||||+++
T Consensus 516 QV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSq 595 (1195)
T PLN03137 516 QIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQ 595 (1195)
T ss_pred HHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhh
Confidence 9999999999999999999888877777776654455899999999988754 344444444556699999999999999
Q ss_pred cCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHH
Q 011387 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSV 252 (487)
Q Consensus 173 ~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 252 (487)
|||+||++|..|..++..+|++|+++||||+++.+..++...+++..+.++..+++++|++|.+..+. ......+..+
T Consensus 596 WGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~--kk~le~L~~~ 673 (1195)
T PLN03137 596 WGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKT--KKCLEDIDKF 673 (1195)
T ss_pred cccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccc--hhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888764 2345667777
Q ss_pred HHhC-CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEE
Q 011387 253 LKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331 (487)
Q Consensus 253 l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI 331 (487)
++.. .+.++||||+|++.|+.+++.|++.|+.+..|||+|++++|..++++|.+|+++|||||++|+||||+|+|++||
T Consensus 674 I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VI 753 (1195)
T PLN03137 674 IKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI 753 (1195)
T ss_pred HHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEE
Confidence 7654 467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcccCCCC------cchhhHhhhHHHHHHHHHhhhc
Q 011387 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ------SFSTRERSSKKSISDFSQVLDV 405 (487)
Q Consensus 332 ~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~ 405 (487)
||++|+|++.|+||+|||||+|.+|.|++||+..|...++.++........+ .........+...++|.+|++|
T Consensus 754 HydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~y 833 (1195)
T PLN03137 754 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRMVSY 833 (1195)
T ss_pred EcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998754322111 0011112335567889999999
Q ss_pred ----ccchHHHHhcccCCCCCCCCcccccccccccccccccCccCCCCCccCCCCCCCCChh
Q 011387 406 ----AGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNL 463 (487)
Q Consensus 406 ----~~crr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~c~~~cd~c~~~~~ 463 (487)
..|||+.+|. || ||++....|+++||||..+..
T Consensus 834 ce~~~~CRR~~lL~-----------------------yF--GE~~~~~~C~~~CDnC~~~~~ 870 (1195)
T PLN03137 834 CENEVDCRRFLQLV-----------------------HF--GEKFDSTNCKKTCDNCSSSKS 870 (1195)
T ss_pred HhChHhhHHHHHHH-----------------------Hc--ccccCccCCCCCCCCCCCCCc
Confidence 3799999999 99 998766789988999987654
No 4
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=6.2e-77 Score=553.73 Aligned_cols=403 Identities=39% Similarity=0.731 Sum_probs=379.7
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHH
Q 011387 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIG 97 (487)
Q Consensus 18 ~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~ 97 (487)
..++++.+..+.|++.|..++|||.|.++|++.+.|+++++++|||+|||+||++|+|...+.++||+|+++|+++|.-.
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil~ 153 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQ 153 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccC-hhhHHHHHhhhhcCCccEEEEeccccccccCCC
Q 011387 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176 (487)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t-~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~ 176 (487)
|+.+|+.+..++...+..+...+...+......++++|+|||.++. ..+++.+.+.+..+.+.++.|||+||.++||||
T Consensus 154 lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghd 233 (695)
T KOG0353|consen 154 LKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHD 233 (695)
T ss_pred HHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcc
Confidence 9999999999999999999888888888888889999999998886 457889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCch-hhHHHHHHHHHHh
Q 011387 177 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL-DDAYADLCSVLKA 255 (487)
Q Consensus 177 f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~l~~ 255 (487)
||++|..|+-+++.|++.|++++|||++..+..|....+++.....++.+|+|||+.|.|+.++.. ++-++++..+++.
T Consensus 234 fr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~ 313 (695)
T KOG0353|consen 234 FRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKG 313 (695)
T ss_pred cCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999988654 4566778888775
Q ss_pred C-CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeC
Q 011387 256 N-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (487)
Q Consensus 256 ~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~ 334 (487)
. .++.+||||-|+++|+.++..|+.+|+.+..||+.|.+++|..+.+.|..|+++|+|||-+||||||.|+||+|||.+
T Consensus 314 ~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhs 393 (695)
T KOG0353|consen 314 DFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHS 393 (695)
T ss_pred ccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecc
Confidence 4 788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHH-------------------------------------------HHhccCCCCCCceEEEEEecchHHHHH
Q 011387 335 IPKSMEAFYQ-------------------------------------------ESGRAGRDQLPSKSLLYYGMDDRRRME 371 (487)
Q Consensus 335 ~p~s~~~y~Q-------------------------------------------r~GRagR~g~~g~~i~~~~~~d~~~~~ 371 (487)
+|+|+++|+| +.|||||++.++.|++||...|.....
T Consensus 394 l~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~s 473 (695)
T KOG0353|consen 394 LPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKIS 473 (695)
T ss_pred cchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHH
Confidence 9999999999 899999999999999999999988877
Q ss_pred HHHHhcccCCCCcchhhHhhhHHHHHHHHHhhhc----ccchHHHHhcccCCCCCCCCcccccccccccccccccCccCC
Q 011387 372 FILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV----AGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIP 447 (487)
Q Consensus 372 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~crr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 447 (487)
.++.. .+..+++|.+|++| +.|||..+.+ +| +|.|.
T Consensus 474 smv~~---------------e~~g~q~ly~mv~y~~d~s~crrv~lae-----------------------hf--de~w~ 513 (695)
T KOG0353|consen 474 SMVQM---------------ENTGIQKLYEMVRYAADISKCRRVKLAE-----------------------HF--DEAWE 513 (695)
T ss_pred HHHHH---------------HhhhHHHHHHHHHHHhhhHHHHHHHHHH-----------------------HH--HhhcC
Confidence 66543 24567889999999 8999999999 88 99999
Q ss_pred CCCccCCCCCCCC
Q 011387 448 VSLCKNSCDACKH 460 (487)
Q Consensus 448 ~~~c~~~cd~c~~ 460 (487)
+..|+++||||..
T Consensus 514 ~~~c~k~cd~c~~ 526 (695)
T KOG0353|consen 514 PEACNKMCDNCCK 526 (695)
T ss_pred HHHHHHHhhhhcc
Confidence 9999999999975
No 5
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.7e-76 Score=629.97 Aligned_cols=420 Identities=47% Similarity=0.776 Sum_probs=378.4
Q ss_pred hhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHc
Q 011387 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK 101 (487)
Q Consensus 22 l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (487)
...+....|...||++.||+.|.++|...+.|+|++|.+|||+||++||++|++..++.+|||+|+++||++|+..|...
T Consensus 248 ~t~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~ 327 (941)
T KOG0351|consen 248 ETKELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKK 327 (941)
T ss_pred cchHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhc
Confidence 44568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHH-HHHhhhhcCCccEEEEeccccccccCCCChHH
Q 011387 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS-KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180 (487)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~-~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~ 180 (487)
+|++..+++..+..++..++..+..+.+.++++|+|||.++..+.+. .+......+.+.++|||||||+++|||+|||+
T Consensus 328 ~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~ 407 (941)
T KOG0351|consen 328 GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPS 407 (941)
T ss_pred CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHH
Confidence 99999999999999999999999999888999999999888765444 55666666779999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHHHHhCCCce
Q 011387 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260 (487)
Q Consensus 181 ~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~ 260 (487)
|..++.++..+|.+|++++|||++..++.|++..|++.++.++..+++|+|++|.|..+.........+...-..+++.+
T Consensus 408 Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s 487 (941)
T KOG0351|consen 408 YKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQS 487 (941)
T ss_pred HHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999998753333333344444568899
Q ss_pred EEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHH
Q 011387 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSME 340 (487)
Q Consensus 261 ~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~ 340 (487)
+||||.++++|+.++..|+..|+.+..||+||+..+|..++++|..++++|+|||.|||||||+||||+||||++|+|++
T Consensus 488 ~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E 567 (941)
T KOG0351|consen 488 GIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFE 567 (941)
T ss_pred eEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcccCCCCcchhhHhhhH-HHHHHHHHhhhc----ccchHHHHhc
Q 011387 341 AFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK-KSISDFSQVLDV----AGKRFSRVLG 415 (487)
Q Consensus 341 ~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~----~~crr~~i~~ 415 (487)
.|||++|||||||.++.|++||+..|...++.++....... ...+ ....++.+++.| +.|||+.++.
T Consensus 568 ~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~~~~~--------~~~~~~~~~~l~~~~~yCen~t~crr~~~l~ 639 (941)
T KOG0351|consen 568 GYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSGNRLS--------GVKKFTRLLELVQVVTYCENETDCRRKQILE 639 (941)
T ss_pred HHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcccccc--------chhhccchhhHHHHHHhhcCccchhHHHHHH
Confidence 99999999999999999999999999999999998762111 1112 466788889998 8999999999
Q ss_pred ccCCCCCCCCcccccccccccccccccCccCCCCCcc--CCCCCCCCChhhhHHHHHHHHH
Q 011387 416 NRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCK--NSCDACKHPNLLAKYLGELTSA 474 (487)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~c~--~~cd~c~~~~~~~~~~~~~~~~ 474 (487)
|| ||.+....|. +.||||.....+.-.+.+++..
T Consensus 640 -----------------------~f--ge~f~~~~c~~~k~cd~C~~~~dv~~~~~d~~~~ 675 (941)
T KOG0351|consen 640 -----------------------YF--GEEFDSKHCKKHKTCDNCRESLDVAYELRDVTLT 675 (941)
T ss_pred -----------------------hc--ccccchhhccCCchHHHhhcccccchHHHHHHHH
Confidence 88 8888888999 7899999876444444444433
No 6
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4.2e-72 Score=593.16 Aligned_cols=410 Identities=40% Similarity=0.681 Sum_probs=360.7
Q ss_pred CCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHH
Q 011387 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL 98 (487)
Q Consensus 19 ~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l 98 (487)
.++..+.....|++.|||++|||+|+++++++++|+|+++.||||+|||+||++|++...+.+|||+|+++|+.|+++.+
T Consensus 6 ~~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l 85 (607)
T PRK11057 6 VLNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQL 85 (607)
T ss_pred cCCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHH
Confidence 45666777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCCh
Q 011387 99 KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (487)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~ 178 (487)
+..|+.+..+++.............+..+. ++++|+||+.+.+..++..+. ...++++||||||++++||++|+
T Consensus 86 ~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~--~~il~~tPe~l~~~~~~~~l~----~~~l~~iVIDEaH~i~~~G~~fr 159 (607)
T PRK11057 86 LANGVAAACLNSTQTREQQLEVMAGCRTGQ--IKLLYIAPERLMMDNFLEHLA----HWNPALLAVDEAHCISQWGHDFR 159 (607)
T ss_pred HHcCCcEEEEcCCCCHHHHHHHHHHHhCCC--CcEEEEChHHhcChHHHHHHh----hCCCCEEEEeCccccccccCccc
Confidence 999999999999888877766666666554 889999999988876554433 34689999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHHHHhCCC
Q 011387 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258 (487)
Q Consensus 179 ~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~ 258 (487)
+.|..+..++..+|+.|++++|||+++.+..++...+++.++.+...+++++|+.+.+.... .....+..++....+
T Consensus 160 ~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~ 236 (607)
T PRK11057 160 PEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKF---KPLDQLMRYVQEQRG 236 (607)
T ss_pred HHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeecc---chHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999998876653 456677788887888
Q ss_pred ceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCC
Q 011387 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKS 338 (487)
Q Consensus 259 ~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s 338 (487)
.++||||+|++.|+.+++.|++.|+.+..|||+|++++|.++++.|.+|+++|||||+++++|||+|+|++||||++|.|
T Consensus 237 ~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s 316 (607)
T PRK11057 237 KSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRN 316 (607)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcccCCCCcchhhHhhhHHHHHHHHHhhhc---ccchHHHHhc
Q 011387 339 MEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV---AGKRFSRVLG 415 (487)
Q Consensus 339 ~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~crr~~i~~ 415 (487)
.++|+||+|||||+|.+|.|++||++.|...++.++..... .........++..|..| ..|||+.+++
T Consensus 317 ~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~Crr~~~l~ 387 (607)
T PRK11057 317 IESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPA---------GQQQDIERHKLNAMGAFAEAQTCRRLVLLN 387 (607)
T ss_pred HHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 99999999999999999999999999999988888765321 11122233456666666 8899999999
Q ss_pred ccCCCCCCCCcccccccccccccccccCccCCCCCccCCCCCCCCChhhhHHHHHHHH
Q 011387 416 NRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTS 473 (487)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~c~~~cd~c~~~~~~~~~~~~~~~ 473 (487)
|| ||.+. ..|+ .||||.++....+.+++.++
T Consensus 388 -----------------------yf--~e~~~-~~c~-~cd~c~~~~~~~~~~~~~~~ 418 (607)
T PRK11057 388 -----------------------YF--GEGRQ-EPCG-NCDICLDPPKQYDGLEDAQK 418 (607)
T ss_pred -----------------------Hh--CCCCC-CCCC-CCCCCCCcccccccHHHHHH
Confidence 88 88754 4687 79999998766555554443
No 7
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.4e-72 Score=576.09 Aligned_cols=374 Identities=47% Similarity=0.812 Sum_probs=329.5
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEe
Q 011387 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (487)
Q Consensus 29 ~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~ 108 (487)
.|++.|||++|||+|+++|+++++|+|+++.||||+|||+||++|++..++.+|||+|+++|+.||++.++.+|+.+..+
T Consensus 2 ~l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l 81 (470)
T TIGR00614 2 ILKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFL 81 (470)
T ss_pred hhHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChh-hHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHH
Q 011387 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (487)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~-~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l 187 (487)
++.....+...+...+..+. .+++++||+.+.+.. ++..+. ....++++||||||++++||++||+.|..+..+
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~--~~il~~TPe~l~~~~~~~~~l~---~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDGK--IKLLYVTPEKCSASNRLLQTLE---ERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred eCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHcCchhHHHHHH---hcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 99988887777777765554 899999999988765 333332 456799999999999999999999999999999
Q ss_pred HHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHHHH-hCCCceEEEEec
Q 011387 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK-ANGDTCAIVYCL 266 (487)
Q Consensus 188 ~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~-~~~~~~~iIf~~ 266 (487)
+..+|++|++++|||+++.+..++...+++..+.++..+++++|+.+.+.... .+.+..+..++. ..++.++||||+
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~--~~~~~~l~~~l~~~~~~~~~IIF~~ 234 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKT--PKILEDLLRFIRKEFKGKSGIIYCP 234 (470)
T ss_pred HHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCC--ccHHHHHHHHHHHhcCCCceEEEEC
Confidence 99999999999999999999999999999999999999999999999887764 256667777776 456677899999
Q ss_pred ccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHH
Q 011387 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (487)
Q Consensus 267 s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~ 346 (487)
|++.++.+++.|++.|+.+..|||+|++++|.++++.|.+|+++|||||++++||||+|+|++||||++|.|++.|+||+
T Consensus 235 s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~ 314 (470)
T TIGR00614 235 SRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQES 314 (470)
T ss_pred cHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEEEEecchHHHHHHHHHhcccCCCCcchhhHhhhHHHHHHHHHhhhcccchHHHHhc
Q 011387 347 GRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLG 415 (487)
Q Consensus 347 GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~crr~~i~~ 415 (487)
|||||+|.+|.|++||++.|...++.++....... ........+..+....+...|||..+++
T Consensus 315 GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~crr~~l~~ 377 (470)
T TIGR00614 315 GRAGRDGLPSECHLFYAPADINRLRRLLMEEPDGQ------QRTYKLKLYEMMEYCLNSSTCRRLILLS 377 (470)
T ss_pred cCcCCCCCCceEEEEechhHHHHHHHHHhcCCchh------HHHHHHHHHHHHHHHhccccCHHHHHHH
Confidence 99999999999999999999999999887643211 1111112222222223338999999999
No 8
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.4e-71 Score=590.95 Aligned_cols=396 Identities=40% Similarity=0.682 Sum_probs=353.7
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceE
Q 011387 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (487)
Q Consensus 27 ~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~ 106 (487)
...|++.|||++|||.|+++|+++++|+|++++||||+|||+||++|++..++.++||+|+++|+.||++.++.+|+.+.
T Consensus 2 ~~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~ 81 (591)
T TIGR01389 2 QQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAA 81 (591)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEE
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHH
Q 011387 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (487)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~ 186 (487)
.+++.....+.......+..+. .+++++||+.+.++.+...+ ....+++|||||||++++||++||+.|..+..
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~~~--~~il~~tpe~l~~~~~~~~l----~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~ 155 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVNGE--LKLLYVAPERLEQDYFLNML----QRIPIALVAVDEAHCVSQWGHDFRPEYQRLGS 155 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhCCC--CCEEEEChhHhcChHHHHHH----hcCCCCEEEEeCCcccccccCccHHHHHHHHH
Confidence 9999998888777777776665 89999999998876654333 34579999999999999999999999999999
Q ss_pred HHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEec
Q 011387 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266 (487)
Q Consensus 187 l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~ 266 (487)
++..+|+.|++++|||+++.+..++...+++..+..+..+++++|+.+.+.... .+...+.+++....+.++||||+
T Consensus 156 l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~~~~IIf~~ 232 (591)
T TIGR01389 156 LAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKN---NKQKFLLDYLKKHRGQSGIIYAS 232 (591)
T ss_pred HHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCC---CHHHHHHHHHHhcCCCCEEEEEC
Confidence 999999999999999999999999999999999988889999999999887653 55677888888777889999999
Q ss_pred ccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHH
Q 011387 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (487)
Q Consensus 267 s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~ 346 (487)
|++.++.+++.|...|+++..|||+|+.++|..+++.|.+|+++|||||++++||||+|++++||||++|.|.+.|+||+
T Consensus 233 sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~ 312 (591)
T TIGR01389 233 SRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEA 312 (591)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEEEEecchHHHHHHHHHhcccCCCCcchhhHhhhHHHHHHHHHhhhc---ccchHHHHhcccCCCCCC
Q 011387 347 GRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV---AGKRFSRVLGNRYWDVWP 423 (487)
Q Consensus 347 GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~crr~~i~~~~~~~~~~ 423 (487)
|||||+|.+|.|+++|++.|...++.+++.... ...........+.+|..| ..|||..+++
T Consensus 313 GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~c~r~~~~~-------- 376 (591)
T TIGR01389 313 GRAGRDGLPAEAILLYSPADIALLKRRIEQSEA--------DDDYKQIEREKLRAMIAYCETQTCRRAYILR-------- 376 (591)
T ss_pred ccccCCCCCceEEEecCHHHHHHHHHHHhccCC--------cHHHHHHHHHHHHHHHHHHcccccHhHHHHH--------
Confidence 999999999999999999999998888765322 112223345567777777 8999999999
Q ss_pred CCcccccccccccccccccCccCCCCCccCCCCCCCCChhhhH
Q 011387 424 VLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAK 466 (487)
Q Consensus 424 ~~~~~~~~~~~~~~~~f~~~~~~~~~~c~~~cd~c~~~~~~~~ 466 (487)
|| ||.. ...|+ .||||..+....+
T Consensus 377 ---------------~f--~~~~-~~~c~-~cd~c~~~~~~~~ 400 (591)
T TIGR01389 377 ---------------YF--GENE-VEPCG-NCDNCLDPPKSYD 400 (591)
T ss_pred ---------------hc--CCCC-CCCCC-CCCCCCCCCceee
Confidence 88 8763 45787 7999987664333
No 9
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-56 Score=416.49 Aligned_cols=351 Identities=23% Similarity=0.303 Sum_probs=292.7
Q ss_pred CCCCcccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeE
Q 011387 8 MQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIV 81 (487)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~ 81 (487)
++...+...|.++++.+++.+++++ .||..|+++|+++||.++.|+|++..|.||||||.+|.+|++++ ...+
T Consensus 54 ~~~~e~~~sf~dLgv~~~L~~ac~~-l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~ 132 (476)
T KOG0330|consen 54 MQTDESFKSFADLGVHPELLEACQE-LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFA 132 (476)
T ss_pred hhhhhhhcchhhcCcCHHHHHHHHH-hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceE
Confidence 4456677888999999999999998 69999999999999999999999999999999999999999864 5689
Q ss_pred EEeCcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH---hhh
Q 011387 82 LVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIH 154 (487)
Q Consensus 82 lvl~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~---~~~ 154 (487)
+|++|+|+|+.|..+.+..+ |+.+..+.++......... .... .++ +|+|||++..+. +..
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~----L~kk--Phi------lVaTPGrL~dhl~~Tkgf 200 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQ----LSKK--PHI------LVATPGRLWDHLENTKGF 200 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHH----hhcC--CCE------EEeCcHHHHHHHHhccCc
Confidence 99999999999998888875 6777777777655443221 1222 333 678888776553 355
Q ss_pred hcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCC---C
Q 011387 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR---P 230 (487)
Q Consensus 155 ~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~---~ 230 (487)
.+..++++|+||||+++++. |.+. +..+...+| +.+.+++|||++.++.+ .....+.+|..+..+... +
T Consensus 201 ~le~lk~LVlDEADrlLd~d--F~~~---ld~ILk~ip~erqt~LfsATMt~kv~k--L~rasl~~p~~v~~s~ky~tv~ 273 (476)
T KOG0330|consen 201 SLEQLKFLVLDEADRLLDMD--FEEE---LDYILKVIPRERQTFLFSATMTKKVRK--LQRASLDNPVKVAVSSKYQTVD 273 (476)
T ss_pred cHHHhHHHhhchHHhhhhhh--hHHH---HHHHHHhcCccceEEEEEeecchhhHH--HHhhccCCCeEEeccchhcchH
Confidence 56778999999999999865 6654 445556666 78999999999999988 446677777766544221 2
Q ss_pred cc--eEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC
Q 011387 231 NL--FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (487)
Q Consensus 231 ~~--~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (487)
++ .|.+... ..+-..|+.++++..+.++||||+|...++.++-.|+..|+.+..+||.|+++.|...++.|++|.
T Consensus 274 ~lkQ~ylfv~~---k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~ 350 (476)
T KOG0330|consen 274 HLKQTYLFVPG---KDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGA 350 (476)
T ss_pred HhhhheEeccc---cccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccC
Confidence 22 2222222 245567888888888999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcccCC
Q 011387 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381 (487)
Q Consensus 309 ~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~ 381 (487)
.+||||||++++|+|+|.|++|||||+|.+..+|+||+||+||.|++|.++.+++..|...+.+|+.....+.
T Consensus 351 r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 351 RSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred CcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998877665543
No 10
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-55 Score=438.45 Aligned_cols=343 Identities=24% Similarity=0.371 Sum_probs=279.8
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------------CCeEE
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVL 82 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------------~~~~l 82 (487)
..|..++++++....|+. -||+.|+|+|...|+.+++|+|++.+|.|||||||+|++|++.+ ++.+|
T Consensus 91 ~~f~~~~ls~~~~~~lk~-~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vL 169 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKE-QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVL 169 (519)
T ss_pred hhhhcccccHHHHHHHHh-cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEE
Confidence 367889999999999998 59999999999999999999999999999999999999999753 57899
Q ss_pred EeCcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhc
Q 011387 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (487)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~ 156 (487)
|++|||+|+.|..+.+.++ +++...+.++.....+.... ..+ +++ +++||+++..+.+ ..++
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l---~~g---vdi------viaTPGRl~d~le~g~~~l 237 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDL---ERG---VDV------VIATPGRLIDLLEEGSLNL 237 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHH---hcC---CcE------EEeCChHHHHHHHcCCccc
Confidence 9999999999999988874 44566777777665543322 222 444 7788888877754 4556
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCC--CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCC-----C
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-----R 229 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~--~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-----~ 229 (487)
+++.++|+||||.|+++| |++..+ .+....| ..|++++|||++..++.....++. ++..+..... .
T Consensus 238 ~~v~ylVLDEADrMldmG--Fe~qI~---~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~--~~~~i~ig~~~~~~a~ 310 (519)
T KOG0331|consen 238 SRVTYLVLDEADRMLDMG--FEPQIR---KILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN--NPIQINVGNKKELKAN 310 (519)
T ss_pred cceeEEEeccHHhhhccc--cHHHHH---HHHHhcCCCcccEEEEeeeccHHHHHHHHHHhc--CceEEEecchhhhhhh
Confidence 789999999999999999 776554 4556553 447999999999999887777776 5554433322 1
Q ss_pred CcceEEEEeeCchhhHHHHHHHHHH---hCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc
Q 011387 230 PNLFYEVRYKDLLDDAYADLCSVLK---ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (487)
Q Consensus 230 ~~~~~~v~~~~~~~~~~~~l~~~l~---~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (487)
.++...+...+ ...+...|..+|. ...+.++||||+|++.|++|+..|+..++++..+||+.++.+|..+++.|++
T Consensus 311 ~~i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fre 389 (519)
T KOG0331|consen 311 HNIRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFRE 389 (519)
T ss_pred cchhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhccc
Confidence 22222222222 2344444444443 3467789999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcc
Q 011387 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (487)
Q Consensus 307 g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (487)
|+..||||||++++|||+|+|++|||||+|.+.++|+||+||+||.|+.|.+++|+...+......+.+-..
T Consensus 390 G~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~ 461 (519)
T KOG0331|consen 390 GKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLR 461 (519)
T ss_pred CCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988877776543
No 11
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-54 Score=441.70 Aligned_cols=342 Identities=20% Similarity=0.254 Sum_probs=273.7
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC-------------CCeE
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PGIV 81 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~-------------~~~~ 81 (487)
..|+++++++++.+.|.. +||..|+|+|+++|+.+++|+|+++.||||||||++|++|++.. +.++
T Consensus 8 ~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 8 QKFSDFALHPQVVEALEK-KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 568889999999999998 79999999999999999999999999999999999999998731 3579
Q ss_pred EEeCcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhh
Q 011387 82 LVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHS 155 (487)
Q Consensus 82 lvl~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~ 155 (487)
||++|+++|+.|+.+.+..+ ++.+..+.++........ .+.. ..+++++|| +.+..+. ....
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~l~~---~~~IlV~TP------~~l~~~l~~~~~~ 154 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK---VLES---GVDILIGTT------GRLIDYAKQNHIN 154 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhcC---CCCEEEECH------HHHHHHHHcCCcc
Confidence 99999999999998887653 677777766655443322 1221 256655555 4443332 2445
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC---CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCC---CC
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NR 229 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~ 229 (487)
...++++||||||++.+|| |... +..+...+| ..+.+++|||++..+.......+ .++..+.... ..
T Consensus 155 l~~v~~lViDEad~l~~~~--f~~~---i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~--~~p~~i~v~~~~~~~ 227 (423)
T PRK04837 155 LGAIQVVVLDEADRMFDLG--FIKD---IRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHM--NNPEYVEVEPEQKTG 227 (423)
T ss_pred cccccEEEEecHHHHhhcc--cHHH---HHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHC--CCCEEEEEcCCCcCC
Confidence 6779999999999999998 5544 444555555 34578999999988877555544 4444332211 12
Q ss_pred CcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCC
Q 011387 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (487)
Q Consensus 230 ~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (487)
.++...... .....+...|..+++.....++||||++++.|+.+++.|.+.|+.+..+||++++++|..+++.|++|++
T Consensus 228 ~~i~~~~~~-~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~ 306 (423)
T PRK04837 228 HRIKEELFY-PSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDL 306 (423)
T ss_pred CceeEEEEe-CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCC
Confidence 233322222 2235677788888887777899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhc
Q 011387 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (487)
Q Consensus 310 ~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~ 377 (487)
+|||||+++++|||+|++++|||||+|.+.+.|+||+||+||.|+.|.+++|+.+.|...+..+.+..
T Consensus 307 ~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~ 374 (423)
T PRK04837 307 DILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 374 (423)
T ss_pred cEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999888888775543
No 12
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.8e-53 Score=441.91 Aligned_cols=347 Identities=22% Similarity=0.332 Sum_probs=270.9
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC-----------CCeE
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIV 81 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~-----------~~~~ 81 (487)
+...|+.+++++.+.+.|++ +||.+|+|+|.++||.+++|+|++++||||||||++|++|++.+ ++.+
T Consensus 128 p~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~ 206 (545)
T PTZ00110 128 PVVSFEYTSFPDYILKSLKN-AGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIV 206 (545)
T ss_pred ccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 34567788899999999997 69999999999999999999999999999999999999998742 4679
Q ss_pred EEeCcHHHHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhh
Q 011387 82 LVVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHS 155 (487)
Q Consensus 82 lvl~P~~~L~~q~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~ 155 (487)
|||+||++|+.|+.+.++.++ +....+.++....... ..+..+ .+++++ ||+++..+. ....
T Consensus 207 LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~---~~l~~~---~~IlVa------TPgrL~d~l~~~~~~ 274 (545)
T PTZ00110 207 LVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQI---YALRRG---VEILIA------CPGRLIDFLESNVTN 274 (545)
T ss_pred EEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHH---HHHHcC---CCEEEE------CHHHHHHHHHcCCCC
Confidence 999999999999999988853 4555555555443322 222222 456544 555444442 2344
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC-C---CCC
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-F---NRP 230 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~---~~~ 230 (487)
+.++++|||||||++++|| |++.+..+ ...+ ++.+++++|||++..+.... ..+....+..+... . ...
T Consensus 275 l~~v~~lViDEAd~mld~g--f~~~i~~i---l~~~~~~~q~l~~SAT~p~~v~~l~-~~l~~~~~v~i~vg~~~l~~~~ 348 (545)
T PTZ00110 275 LRRVTYLVLDEADRMLDMG--FEPQIRKI---VSQIRPDRQTLMWSATWPKEVQSLA-RDLCKEEPVHVNVGSLDLTACH 348 (545)
T ss_pred hhhCcEEEeehHHhhhhcc--hHHHHHHH---HHhCCCCCeEEEEEeCCCHHHHHHH-HHHhccCCEEEEECCCccccCC
Confidence 6679999999999999988 67655444 3333 57899999999988765533 33332334433221 1 112
Q ss_pred cceEEEEeeCchhhHHHHHHHHHHhC--CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC
Q 011387 231 NLFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (487)
Q Consensus 231 ~~~~~v~~~~~~~~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (487)
++...+.... ...+...|.+++... .+.++||||+|++.|+.+++.|...|+.+..+||++++++|..+++.|++|+
T Consensus 349 ~i~q~~~~~~-~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~ 427 (545)
T PTZ00110 349 NIKQEVFVVE-EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGK 427 (545)
T ss_pred CeeEEEEEEe-chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCC
Confidence 3333332222 134556666666553 5678999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhccc
Q 011387 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (487)
Q Consensus 309 ~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (487)
.+|||||+++++|||+|+|++|||||+|.++++|+||+||+||.|+.|.+++|++++|...+..+++....
T Consensus 428 ~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~ 498 (545)
T PTZ00110 428 SPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLRE 498 (545)
T ss_pred CcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887777665443
No 13
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9.1e-53 Score=435.09 Aligned_cols=343 Identities=22% Similarity=0.300 Sum_probs=275.7
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCcHH
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~ 88 (487)
..|..+++++++.+.|.+ +||..|+|+|+++++.+++|+|+++.||||||||++|++|++.. ...++|++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~-~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 4 TAFSTLPLPPALLANLNE-LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 468889999999999998 79999999999999999999999999999999999999999864 34799999999
Q ss_pred HHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCCccE
Q 011387 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (487)
Q Consensus 89 ~L~~q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l~~ 161 (487)
+|+.|+.+.++.+ ++....+.++......... +. ...+++++ ||+.+..+.. ......+++
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~---l~---~~~~IvV~------Tp~rl~~~l~~~~~~l~~l~~ 150 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDS---LE---HGAHIIVG------TPGRILDHLRKGTLDLDALNT 150 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHH---hc---CCCCEEEE------ChHHHHHHHHcCCccHHHCCE
Confidence 9999999988864 4566666666655443221 21 22556554 5555444432 334567899
Q ss_pred EEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEe--cCCCCCcceEEEEe
Q 011387 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRY 238 (487)
Q Consensus 162 lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~~v~~ 238 (487)
+|+||||+++++| |... +..+...+| ..+++++|||+++......... +.++..+. .....+.+...+..
T Consensus 151 lViDEad~~l~~g--~~~~---l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~--~~~~~~i~~~~~~~~~~i~~~~~~ 223 (460)
T PRK11776 151 LVLDEADRMLDMG--FQDA---IDAIIRQAPARRQTLLFSATYPEGIAAISQRF--QRDPVEVKVESTHDLPAIEQRFYE 223 (460)
T ss_pred EEEECHHHHhCcC--cHHH---HHHHHHhCCcccEEEEEEecCcHHHHHHHHHh--cCCCEEEEECcCCCCCCeeEEEEE
Confidence 9999999999988 5544 444555555 6789999999998876644333 34444332 22223333332222
Q ss_pred eCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc
Q 011387 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (487)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~ 318 (487)
.. ...+...+..++....+.++||||+|++.++.+++.|.+.|+.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 224 ~~-~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~ 302 (460)
T PRK11776 224 VS-PDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVA 302 (460)
T ss_pred eC-cHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEeccc
Confidence 22 24578888888888788899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcc
Q 011387 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (487)
Q Consensus 319 ~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (487)
++|||+|++++||+||+|.+.++|+||+||+||.|+.|.+++|+.+.|...+..+.+...
T Consensus 303 ~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~ 362 (460)
T PRK11776 303 ARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLG 362 (460)
T ss_pred ccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999888887766544
No 14
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-52 Score=438.71 Aligned_cols=343 Identities=16% Similarity=0.220 Sum_probs=275.4
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC-------------CCeEE
Q 011387 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PGIVL 82 (487)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~-------------~~~~l 82 (487)
.|..+++++++++.|++ +||..|+|+|.++|+.+++|+|+++.||||||||++|++|++.. ..++|
T Consensus 10 ~f~~l~l~~~l~~~L~~-~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 10 TFSSFDLHPALLAGLES-AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred ChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 58889999999999997 79999999999999999999999999999999999999998752 36899
Q ss_pred EeCcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh---hhh
Q 011387 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHS 155 (487)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~---~~~ 155 (487)
||+||++|+.|+.+.+..+ ++.+..+.++........... . ..+|+++||+ .+..+.. ...
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~----~--~~dIiV~TP~------rL~~~l~~~~~~~ 156 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ----Q--GVDVIIATPG------RLIDYVKQHKVVS 156 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh----C--CCCEEEECHH------HHHHHHHhccccc
Confidence 9999999999999998875 566677777766554332221 1 2566555554 4433321 234
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC---CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC-CCCCc
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPN 231 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~ 231 (487)
...+++|||||||++.++| |.. .+..+...+| +.++++||||++..+.......+.......+... ....+
T Consensus 157 l~~v~~lViDEAh~lld~g--f~~---~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~ 231 (572)
T PRK04537 157 LHACEICVLDEADRMFDLG--FIK---DIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAAR 231 (572)
T ss_pred hhheeeeEecCHHHHhhcc--hHH---HHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccc
Confidence 5678899999999999988 544 3444555555 5789999999998887765555432222222211 12223
Q ss_pred ceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcE
Q 011387 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (487)
Q Consensus 232 ~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~v 311 (487)
+...+.. .....++..+..++....+.++||||+|++.++.+++.|.+.|+.+..+||+|++.+|.++++.|.+|+++|
T Consensus 232 i~q~~~~-~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~V 310 (572)
T PRK04537 232 VRQRIYF-PADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEI 310 (572)
T ss_pred eeEEEEe-cCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeE
Confidence 3333322 223567778888888878889999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhc
Q 011387 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (487)
Q Consensus 312 LVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~ 377 (487)
||||+++++|||+|++++|||||+|.+.+.|+||+||+||.|+.|.+++|+.+.+...+..+.+..
T Consensus 311 LVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~ 376 (572)
T PRK04537 311 LVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYI 376 (572)
T ss_pred EEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888887776653
No 15
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-52 Score=433.06 Aligned_cols=345 Identities=22% Similarity=0.329 Sum_probs=286.7
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC-------CCe-EEEeCc
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------PGI-VLVVSP 86 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~-------~~~-~lvl~P 86 (487)
..|..+++++++++.+.+ .||..|+|+|..+||.++.|+|+++.|+||||||++|.+|++.+ ... +||++|
T Consensus 29 ~~F~~l~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECC
Confidence 568899999999999999 69999999999999999999999999999999999999999864 112 899999
Q ss_pred HHHHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCCc
Q 011387 87 LIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (487)
Q Consensus 87 ~~~L~~q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l 159 (487)
||+|+.|..+.+..+ ++.+..+.++.+...+.. .+..+ .++ +|+||+++..+.. ..+...+
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~---~l~~~---~~i------vVaTPGRllD~i~~~~l~l~~v 175 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIE---ALKRG---VDI------VVATPGRLLDLIKRGKLDLSGV 175 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHH---HHhcC---CCE------EEECccHHHHHHHcCCcchhhc
Confidence 999999999998874 456677777776655443 23322 344 6777887766643 4567789
Q ss_pred cEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC---C--CCCcce
Q 011387 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---F--NRPNLF 233 (487)
Q Consensus 160 ~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~--~~~~~~ 233 (487)
.++|+||||.++++| |.+.. ..+....| +.++++||||.+..+.......+. +|..+... . ..+++.
T Consensus 176 ~~lVlDEADrmLd~G--f~~~i---~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~--~p~~i~v~~~~~~~~~~~i~ 248 (513)
T COG0513 176 ETLVLDEADRMLDMG--FIDDI---EKILKALPPDRQTLLFSATMPDDIRELARRYLN--DPVEIEVSVEKLERTLKKIK 248 (513)
T ss_pred CEEEeccHhhhhcCC--CHHHH---HHHHHhCCcccEEEEEecCCCHHHHHHHHHHcc--CCcEEEEccccccccccCce
Confidence 999999999999998 66554 44555555 699999999999976664444444 55444332 1 334555
Q ss_pred EEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 011387 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (487)
Q Consensus 234 ~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLV 313 (487)
..+........++..|..+++.....++||||+|+..++.++..|...|+.+..+||+|++++|.++++.|++|+.+|||
T Consensus 249 q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLV 328 (513)
T COG0513 249 QFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLV 328 (513)
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 55555543345899999999988777899999999999999999999999999999999999999999999999999999
Q ss_pred EcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecc-hHHHHHHHHHhccc
Q 011387 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKNQS 379 (487)
Q Consensus 314 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~-d~~~~~~i~~~~~~ 379 (487)
|||++++|||+|+|++|||||+|.+.+.|+||+||+||.|+.|.+++|+.+. |...+..+.+....
T Consensus 329 aTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~ 395 (513)
T COG0513 329 ATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLER 395 (513)
T ss_pred EechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999986 88888888776543
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2e-52 Score=430.91 Aligned_cols=342 Identities=22% Similarity=0.301 Sum_probs=269.4
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------------CCeEEE
Q 011387 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLV 83 (487)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------------~~~~lv 83 (487)
.|+.+++++++.+.|.+ +||..|+|+|+++|+.+++|+|+++.||||+|||++|++|++.. ..++||
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAE-QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 46788999999999998 79999999999999999999999999999999999999998753 236999
Q ss_pred eCcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhhcC
Q 011387 84 VSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRG 157 (487)
Q Consensus 84 l~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~~~ 157 (487)
|+||++|+.|+.+.++.+ ++....+.++........ .+. + ..+|+++||+.+ ..+. ......
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~--~~~IiV~TP~rL------~~~~~~~~~~l~ 148 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KLR-G--GVDVLVATPGRL------LDLEHQNAVKLD 148 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HHc-C--CCcEEEEChHHH------HHHHHcCCcccc
Confidence 999999999999998874 455556666555443321 111 2 256766665543 3332 233467
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEe---cCCCCCcce
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK---SSFNRPNLF 233 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~~~ 233 (487)
.+++|||||||++++|+ |.. .+..+...++ ..+++++|||.++.+.......+ .++..+. .....+++.
T Consensus 149 ~v~~lViDEah~ll~~~--~~~---~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~~i~ 221 (456)
T PRK10590 149 QVEILVLDEADRMLDMG--FIH---DIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLL--HNPLEIEVARRNTASEQVT 221 (456)
T ss_pred cceEEEeecHHHHhccc--cHH---HHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHc--CCCeEEEEeccccccccee
Confidence 79999999999999988 443 3444555555 56899999999987755433333 3333222 112223333
Q ss_pred EEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 011387 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (487)
Q Consensus 234 ~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLV 313 (487)
..+...+ ...+...+..++......++||||++++.++.+++.|.+.|+.+..+||++++++|.++++.|++|+++|||
T Consensus 222 ~~~~~~~-~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLV 300 (456)
T PRK10590 222 QHVHFVD-KKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300 (456)
T ss_pred EEEEEcC-HHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEE
Confidence 3333322 234555666666666778899999999999999999999999999999999999999999999999999999
Q ss_pred EcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcc
Q 011387 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (487)
Q Consensus 314 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (487)
||+++++|||+|++++||||++|.+.++|+||+||+||+|..|.+++|+...|...++.+.+...
T Consensus 301 aTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~ 365 (456)
T PRK10590 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLK 365 (456)
T ss_pred EccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999888887766543
No 17
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.8e-52 Score=434.98 Aligned_cols=346 Identities=22% Similarity=0.323 Sum_probs=267.7
Q ss_pred cccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc-------------CC
Q 011387 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------------KP 78 (487)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~-------------~~ 78 (487)
.+...|+.+++++.+.+.|++ .||..|+|+|.++|+.+++|+|+++.||||||||++|++|++. .+
T Consensus 118 ~pi~~f~~~~l~~~l~~~L~~-~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~ 196 (518)
T PLN00206 118 PPILSFSSCGLPPKLLLNLET-AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRN 196 (518)
T ss_pred chhcCHHhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCC
Confidence 345567788999999999987 7999999999999999999999999999999999999999874 25
Q ss_pred CeEEEeCcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--h
Q 011387 79 GIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--K 152 (487)
Q Consensus 79 ~~~lvl~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~ 152 (487)
+.+|||+||++|+.|+.+.++.+ ++....+.++....... ..+.. ..+++ ++||+.+..+. .
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~~---~~~Ii------V~TPgrL~~~l~~~ 264 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQQ---GVELI------VGTPGRLIDLLSKH 264 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhcC---CCCEE------EECHHHHHHHHHcC
Confidence 68999999999999988877764 34444454444333221 12222 24554 55555544442 2
Q ss_pred hhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEec-CCCCCc
Q 011387 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPN 231 (487)
Q Consensus 153 ~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~ 231 (487)
.....++++|||||||++++|| |++.+ ..+...+++.+++++|||+++.+.... ..+ ..++..+.. ....++
T Consensus 265 ~~~l~~v~~lViDEad~ml~~g--f~~~i---~~i~~~l~~~q~l~~SATl~~~v~~l~-~~~-~~~~~~i~~~~~~~~~ 337 (518)
T PLN00206 265 DIELDNVSVLVLDEVDCMLERG--FRDQV---MQIFQALSQPQVLLFSATVSPEVEKFA-SSL-AKDIILISIGNPNRPN 337 (518)
T ss_pred CccchheeEEEeecHHHHhhcc--hHHHH---HHHHHhCCCCcEEEEEeeCCHHHHHHH-HHh-CCCCEEEEeCCCCCCC
Confidence 3456778999999999999998 67554 445566788999999999998875533 222 344444332 222322
Q ss_pred --ceEEEEeeCchhhHHHHHHHHHHhC--CCceEEEEecccchHHHHHHHHHh-CCCceEEecCCCCHHHHHHHHHHHhc
Q 011387 232 --LFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDKARSSVLDDWIS 306 (487)
Q Consensus 232 --~~~~v~~~~~~~~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~-~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (487)
+...+.... ...+...+.++++.. ...++||||+|+..++.+++.|.. .|+.+..+||++++++|..+++.|++
T Consensus 338 ~~v~q~~~~~~-~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~ 416 (518)
T PLN00206 338 KAVKQLAIWVE-TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV 416 (518)
T ss_pred cceeEEEEecc-chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC
Confidence 222222222 234555666776643 235799999999999999999975 68999999999999999999999999
Q ss_pred CCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcc
Q 011387 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (487)
Q Consensus 307 g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (487)
|+.+|||||+++++|||+|++++|||||+|.+.++|+||+|||||.|..|.+++|++.+|...+..+.+...
T Consensus 417 G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~ 488 (518)
T PLN00206 417 GEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLK 488 (518)
T ss_pred CCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887777766543
No 18
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=9.9e-52 Score=424.71 Aligned_cols=342 Identities=23% Similarity=0.331 Sum_probs=276.2
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC----------CCeEEEeC
Q 011387 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVS 85 (487)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~----------~~~~lvl~ 85 (487)
.|+.+++++++++.|++ +||..|+++|.++++++++|+|+++.||||+|||++|++|++.. ..++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQD-KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 47889999999999998 69999999999999999999999999999999999999999852 36899999
Q ss_pred cHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhhcCCc
Q 011387 86 PLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLL 159 (487)
Q Consensus 86 P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~~~~l 159 (487)
|+++|+.|+.+.+..+ ++....+.++.......... .. ..+++++|| +++..+. .......+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~--~~~IlV~Tp------~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SE--NQDIVVATP------GRLLQYIKEENFDCRAV 148 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cC--CCCEEEECh------HHHHHHHHcCCcCcccC
Confidence 9999999988877763 66777777776665433222 12 255655555 4433332 23345678
Q ss_pred cEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCC---CCCcceEE
Q 011387 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYE 235 (487)
Q Consensus 160 ~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~~~~~ 235 (487)
++|||||||++++|| |...+..+ ....+ ..++++||||++.....++...+. .++..+.... .+.++...
T Consensus 149 ~~lViDEah~~l~~~--~~~~~~~i---~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~i~~~ 222 (434)
T PRK11192 149 ETLILDEADRMLDMG--FAQDIETI---AAETRWRKQTLLFSATLEGDAVQDFAERLL-NDPVEVEAEPSRRERKKIHQW 222 (434)
T ss_pred CEEEEECHHHHhCCC--cHHHHHHH---HHhCccccEEEEEEeecCHHHHHHHHHHHc-cCCEEEEecCCcccccCceEE
Confidence 999999999999988 66555444 33333 568999999998776666666553 3444433222 23344444
Q ss_pred EEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 011387 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (487)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT 315 (487)
+...+....+...|..+++.....++||||++++.++.+++.|++.|+.+..+||+|++++|..+++.|++|+++|||||
T Consensus 223 ~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT 302 (434)
T PRK11192 223 YYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT 302 (434)
T ss_pred EEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc
Confidence 44444445677788888877677899999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHh
Q 011387 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (487)
Q Consensus 316 ~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~ 376 (487)
+++++|||+|++++|||||+|.+.+.|+||+||+||+|..|.+++++...|...+..+.+.
T Consensus 303 d~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~ 363 (434)
T PRK11192 303 DVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERY 363 (434)
T ss_pred cccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998887777653
No 19
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-52 Score=400.15 Aligned_cols=335 Identities=21% Similarity=0.313 Sum_probs=281.6
Q ss_pred CCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC---------C--CeEEEeCcH
Q 011387 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------P--GIVLVVSPL 87 (487)
Q Consensus 19 ~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~---------~--~~~lvl~P~ 87 (487)
+.+|++++..++.. +||..+||+|..+||.+++++|++|.|+||||||++|++|++.. . -.++||+||
T Consensus 10 ~~~L~~~l~~~l~~-~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPT 88 (567)
T KOG0345|consen 10 APPLSPWLLEALDE-SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPT 88 (567)
T ss_pred CCCccHHHHHHHHh-cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCc
Confidence 34467999999998 79999999999999999999999999999999999999998742 2 268999999
Q ss_pred HHHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhh----hhcCC
Q 011387 88 IALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGL 158 (487)
Q Consensus 88 ~~L~~q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~----~~~~~ 158 (487)
|+|+.|..+.+..+ .+.+..+.++.+..+..... .... .+| .|+|||++..+.+. .+.+.
T Consensus 89 RELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~f---kee~--~nI------lVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 89 RELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTF---KEEG--PNI------LVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred HHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHH---HHhC--CcE------EEeCchhHHHHHhchhhhccccc
Confidence 99999999887764 55688888886665543333 3333 223 77888888887554 55668
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCC-------C
Q 011387 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR-------P 230 (487)
Q Consensus 159 l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~-------~ 230 (487)
+.++|+||||+++++| |. ..+..+.+.+| ....-+||||.+.++.+ ....++.+|..+...... -
T Consensus 158 Le~LVLDEADrLldmg--Fe---~~~n~ILs~LPKQRRTGLFSATq~~~v~d--L~raGLRNpv~V~V~~k~~~~tPS~L 230 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMG--FE---ASVNTILSFLPKQRRTGLFSATQTQEVED--LARAGLRNPVRVSVKEKSKSATPSSL 230 (567)
T ss_pred cceEEecchHhHhccc--HH---HHHHHHHHhcccccccccccchhhHHHHH--HHHhhccCceeeeecccccccCchhh
Confidence 9999999999999999 44 66777888888 57789999999999877 666788888865432221 2
Q ss_pred cceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCC
Q 011387 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSR 308 (487)
Q Consensus 231 ~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (487)
.++|.+... ..++..+.+++.....+++|||.+|...++..+..|... +..+..+||.|++..|..+++.|.+..
T Consensus 231 ~~~Y~v~~a---~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~ 307 (567)
T KOG0345|consen 231 ALEYLVCEA---DEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLS 307 (567)
T ss_pred cceeeEecH---HHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhcc
Confidence 334444444 578999999999999999999999999999999999875 578899999999999999999999988
Q ss_pred CcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHH
Q 011387 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (487)
Q Consensus 309 ~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~ 375 (487)
-.+|+|||++++|||+|+|++||+||+|.+...|+||+||+||.|+.|.+++|+.+.+..++.++--
T Consensus 308 ~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i 374 (567)
T KOG0345|consen 308 NGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRI 374 (567)
T ss_pred CceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999999999998888776543
No 20
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.1e-51 Score=425.98 Aligned_cols=350 Identities=18% Similarity=0.242 Sum_probs=274.2
Q ss_pred cccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC-------------C
Q 011387 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------P 78 (487)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~-------------~ 78 (487)
.....|.++++++.+.++|.+ +||..|+++|.++|+.+++|+|+++.+|||||||++|++|++.. .
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~ 162 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGE 162 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCC
Confidence 344568889999999999998 79999999999999999999999999999999999999998753 3
Q ss_pred CeEEEeCcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--h
Q 011387 79 GIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--K 152 (487)
Q Consensus 79 ~~~lvl~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~ 152 (487)
.++|||+||++|+.|+.+.++.+ ++....+.++....... ..+... ..+++++||+.+ ..+. .
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~--~~~Iiv~TP~~L------l~~~~~~ 231 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEAR--FCDILVATPGRL------LDFNQRG 231 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCC--CCCEEEECHHHH------HHHHHcC
Confidence 58999999999999999988874 56666666655443322 222222 256766666654 3332 2
Q ss_pred hhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC---CCC
Q 011387 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNR 229 (487)
Q Consensus 153 ~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~~ 229 (487)
...++++++|||||||++.+++ |.+.+..+.......++.+++++|||.+.........++ .++..+... ...
T Consensus 232 ~~~l~~l~~lViDEah~l~~~~--~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~~~~v~~~~~~~~~ 307 (475)
T PRK01297 232 EVHLDMVEVMVLDEADRMLDMG--FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWT--TDPAIVEIEPENVAS 307 (475)
T ss_pred CcccccCceEEechHHHHHhcc--cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhc--cCCEEEEeccCcCCC
Confidence 3446779999999999999987 665544443322222356899999999887766444433 334433221 112
Q ss_pred CcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCC
Q 011387 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (487)
Q Consensus 230 ~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (487)
+++...+.... ..++...+..++......++||||++++.++.+++.|.+.|+.+..+||++++++|.++++.|++|++
T Consensus 308 ~~~~~~~~~~~-~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~ 386 (475)
T PRK01297 308 DTVEQHVYAVA-GSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKI 386 (475)
T ss_pred CcccEEEEEec-chhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCC
Confidence 22322222221 24567777888887777899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcc
Q 011387 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (487)
Q Consensus 310 ~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (487)
+|||||+++++|||+|++++||+|++|.|..+|+||+||+||.|+.|.+++|++.+|...+..+.+...
T Consensus 387 ~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~ 455 (475)
T PRK01297 387 RVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLG 455 (475)
T ss_pred cEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999998887777765543
No 21
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.7e-51 Score=433.94 Aligned_cols=345 Identities=21% Similarity=0.304 Sum_probs=275.3
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCcHH
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~ 88 (487)
..|..++++++++++|.+ +||.+|+|+|.++|+.+++|+|+++.||||+|||++|.+|++.. .+++||++||+
T Consensus 6 ~~f~~l~L~~~ll~al~~-~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 6 TTFADLGLKAPILEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 358889999999999998 79999999999999999999999999999999999999998743 56899999999
Q ss_pred HHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH-H-hhhhcCCccE
Q 011387 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-K-KIHSRGLLNL 161 (487)
Q Consensus 89 ~L~~q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l-~-~~~~~~~l~~ 161 (487)
+|+.|+.+.+..+ ++....+.++........ .+. ...+|+++|| +.+..+ . ....+..+++
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~---~l~---~~~~IVVgTP------grl~d~l~r~~l~l~~l~~ 152 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR---ALR---QGPQIVVGTP------GRLLDHLKRGTLDLSKLSG 152 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHH---Hhc---CCCCEEEECH------HHHHHHHHcCCcchhhceE
Confidence 9999998887764 566666666654433221 121 1255655555 443333 2 2345677999
Q ss_pred EEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEec---CCCCCcceEEEE
Q 011387 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVR 237 (487)
Q Consensus 162 lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~~~~~v~ 237 (487)
||+||||+++++| |. ..+..+...+| ..++++||||+++.+......++ .++..+.. ....+++...+.
T Consensus 153 lVlDEAd~ml~~g--f~---~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l--~~~~~i~i~~~~~~~~~i~q~~~ 225 (629)
T PRK11634 153 LVLDEADEMLRMG--FI---EDVETIMAQIPEGHQTALFSATMPEAIRRITRRFM--KEPQEVRIQSSVTTRPDISQSYW 225 (629)
T ss_pred EEeccHHHHhhcc--cH---HHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHc--CCCeEEEccCccccCCceEEEEE
Confidence 9999999999988 44 34555666666 67899999999888765433333 34443321 223344433322
Q ss_pred eeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 011387 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (487)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~ 317 (487)
... ...+...|..++......++||||+|+..++.+++.|.+.|+.+..+||+|++.+|.++++.|++|+++|||||++
T Consensus 226 ~v~-~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv 304 (629)
T PRK11634 226 TVW-GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV 304 (629)
T ss_pred Eec-hhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcch
Confidence 222 2356777888888777778999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcccC
Q 011387 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (487)
Q Consensus 318 ~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~ 380 (487)
+++|||+|+|++|||||+|.+.++|+||+||+||.|+.|.+++|+.+.|...++.+.+.....
T Consensus 305 ~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~ 367 (629)
T PRK11634 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 (629)
T ss_pred HhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999988888887765443
No 22
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=8e-52 Score=400.17 Aligned_cols=346 Identities=22% Similarity=0.293 Sum_probs=284.7
Q ss_pred cccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---------------
Q 011387 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------------- 76 (487)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~--------------- 76 (487)
.+...|+..+++.++++.+.. .||..|+|+|+.+||..++++|++.+|.||||||++|++|++.
T Consensus 242 nplrnwEE~~~P~e~l~~I~~-~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~ 320 (673)
T KOG0333|consen 242 NPLRNWEESGFPLELLSVIKK-PGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNI 320 (673)
T ss_pred ccccChhhcCCCHHHHHHHHh-cCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcc
Confidence 345678999999999999998 5999999999999999999999999999999999999988763
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH--
Q 011387 77 KPGIVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-- 150 (487)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l-- 150 (487)
.++.++++.||++|++|..++-.+ +|++.+.+.++....++. +++--++..+++||+.+..-
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~------------fqls~gceiviatPgrLid~Le 388 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQG------------FQLSMGCEIVIATPGRLIDSLE 388 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhh------------hhhhccceeeecCchHHHHHHH
Confidence 178899999999999998888666 477777777777766543 23333344478888866544
Q ss_pred HhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHH-------------------HhCC----CCcEEEEecCCChHH
Q 011387 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR-------------------NYLP----DVPILALTATAAPKV 207 (487)
Q Consensus 151 ~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~-------------------~~~~----~~~~i~lSAT~~~~~ 207 (487)
...+.++...++|+|||+.+.++| |++.+..+-.-+ ..|. -.+.+.||||+++.+
T Consensus 389 nr~lvl~qctyvvldeadrmiDmg--fE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~v 466 (673)
T KOG0333|consen 389 NRYLVLNQCTYVVLDEADRMIDMG--FEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAV 466 (673)
T ss_pred HHHHHhccCceEeccchhhhhccc--ccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHH
Confidence 334556778999999999999999 888876543221 1111 157899999999998
Q ss_pred HHHHHHHhcCCCCeEEecCC---CCCcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCc
Q 011387 208 QKDVMESLCLQNPLVLKSSF---NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (487)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~ 284 (487)
...... .+..|.++..++ ..+-+...+..... +.+...|.+++++....++|||+|+++.|+.||+.|.+.|+.
T Consensus 467 erlar~--ylr~pv~vtig~~gk~~~rveQ~v~m~~e-d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~ 543 (673)
T KOG0333|consen 467 ERLARS--YLRRPVVVTIGSAGKPTPRVEQKVEMVSE-DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYK 543 (673)
T ss_pred HHHHHH--HhhCCeEEEeccCCCCccchheEEEEecc-hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccce
Confidence 774444 456777665443 23334444444433 456899999999988899999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEec
Q 011387 285 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (487)
Q Consensus 285 ~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~ 364 (487)
+..|||+-++++|+.+++.|+.|..+||||||++++|||+|||.+||+||+++|++.|.||+||+||+|+.|.++.|+++
T Consensus 544 ~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~ 623 (673)
T KOG0333|consen 544 VTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTP 623 (673)
T ss_pred EEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHH
Q 011387 365 DDRRRMEFILS 375 (487)
Q Consensus 365 ~d~~~~~~i~~ 375 (487)
.|...+..+.+
T Consensus 624 ~dt~v~ydLkq 634 (673)
T KOG0333|consen 624 ADTAVFYDLKQ 634 (673)
T ss_pred chhHHHHHHHH
Confidence 99765554433
No 23
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-51 Score=367.92 Aligned_cols=349 Identities=19% Similarity=0.316 Sum_probs=284.6
Q ss_pred CCCcccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEE
Q 011387 9 QSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVL 82 (487)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~l 82 (487)
+.......|.++++.+++++.+.. +||++|..+|+.||+++++|+|+++.|..|+|||..|.+..++. ...++
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~-yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~l 99 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYA-YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQAL 99 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHH-hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEE
Confidence 344566778999999999999998 69999999999999999999999999999999999987766653 56799
Q ss_pred EeCcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhc
Q 011387 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (487)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~ 156 (487)
|++|||+|+.|.-+.+..+ ++.+-...++.+..+.... .+ ++...+..||++...+.+ .+..
T Consensus 100 ilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikk----------ld--~G~hvVsGtPGrv~dmikr~~L~t 167 (400)
T KOG0328|consen 100 ILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKK----------LD--YGQHVVSGTPGRVLDMIKRRSLRT 167 (400)
T ss_pred EecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhh----------hc--ccceEeeCCCchHHHHHHhccccc
Confidence 9999999999999888885 4555555555444332111 11 333447778887777743 4556
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC---CCCCcc
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNL 232 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~~ 232 (487)
+.++++|+||||.+++.| |. .++-.+.+.+| +.|++++|||.+.++.+...+ .+.+|+.+-.. .....+
T Consensus 168 r~vkmlVLDEaDemL~kg--fk---~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~k--fmtdpvrilvkrdeltlEgI 240 (400)
T KOG0328|consen 168 RAVKMLVLDEADEMLNKG--FK---EQIYDIYRYLPPGAQVVLVSATLPHEILEMTEK--FMTDPVRILVKRDELTLEGI 240 (400)
T ss_pred cceeEEEeccHHHHHHhh--HH---HHHHHHHHhCCCCceEEEEeccCcHHHHHHHHH--hcCCceeEEEecCCCchhhh
Confidence 679999999999999877 43 55566666676 899999999999998884444 55666643322 222223
Q ss_pred eEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 011387 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (487)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vL 312 (487)
..-+...+..+-+++.|.++.....-...+|||||+..+..|.+.+.+.+..+..+||+|++++|.+++.+|++|+.+||
T Consensus 241 Kqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvL 320 (400)
T KOG0328|consen 241 KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVL 320 (400)
T ss_pred hhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEE
Confidence 33333334335577888887777777789999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhc
Q 011387 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (487)
Q Consensus 313 VaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~ 377 (487)
++||+.++|||+|.|++|||||+|.+.+.|+||+||+||.|+.|.++-|+..+|.+.++.+.+..
T Consensus 321 itTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~y 385 (400)
T KOG0328|consen 321 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYY 385 (400)
T ss_pred EEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887754
No 24
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-51 Score=395.83 Aligned_cols=343 Identities=22% Similarity=0.364 Sum_probs=280.9
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC---------CCeEEEe
Q 011387 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVV 84 (487)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~---------~~~~lvl 84 (487)
...|..+.|+..+++++.. +||..|+|+|..+||..+-|+|++.+|.||||||.+|++|+|.+ ..++||+
T Consensus 180 ~~sF~~mNLSRPlLka~~~-lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL 258 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACST-LGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVL 258 (691)
T ss_pred hhhHHhcccchHHHHHHHh-cCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEE
Confidence 4478899999999999997 79999999999999999999999999999999999999999864 4579999
Q ss_pred CcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHH-HHh--hhhcC
Q 011387 85 SPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-LKK--IHSRG 157 (487)
Q Consensus 85 ~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~-l~~--~~~~~ 157 (487)
+|||+|+.|.....+.+ .|.+....++.....+..... ..|+ | +|+|||++-. +.+ ...+.
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~PD--I------VIATPGRlIDHlrNs~sf~ld 326 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SRPD--I------VIATPGRLIDHLRNSPSFNLD 326 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hCCC--E------EEecchhHHHHhccCCCcccc
Confidence 99999999988776653 566777777776665544332 2333 3 7788886544 433 33466
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCC---CCcc-
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNL- 232 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~~- 232 (487)
.+.++|+||||++++.| |+ .++..+.+.+| +.|.++||||++..+.. ...+.+..|+.+....+ .+.+
T Consensus 327 siEVLvlDEADRMLeeg--Fa---demnEii~lcpk~RQTmLFSATMteeVkd--L~slSL~kPvrifvd~~~~~a~~Lt 399 (691)
T KOG0338|consen 327 SIEVLVLDEADRMLEEG--FA---DEMNEIIRLCPKNRQTMLFSATMTEEVKD--LASLSLNKPVRIFVDPNKDTAPKLT 399 (691)
T ss_pred ceeEEEechHHHHHHHH--HH---HHHHHHHHhccccccceeehhhhHHHHHH--HHHhhcCCCeEEEeCCccccchhhh
Confidence 78899999999999988 55 45566666666 78999999999999877 55667777775543322 1223
Q ss_pred --eEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCc
Q 011387 233 --FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (487)
Q Consensus 233 --~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (487)
++.++.... .+.-..|..++...-...+|||+.|++.|+++.-.|--+|+++.-+||+|++++|.+.++.|++++++
T Consensus 400 QEFiRIR~~re-~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid 478 (691)
T KOG0338|consen 400 QEFIRIRPKRE-GDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID 478 (691)
T ss_pred HHHheeccccc-cccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC
Confidence 233332211 22334455566655667899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhc
Q 011387 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (487)
Q Consensus 311 vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~ 377 (487)
||||||++++|+||++|..||||.+|.+.+.|+||+||+.|.|+.|.+++|+..+|.+.++.+++..
T Consensus 479 vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 479 VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999998873
No 25
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=9.5e-51 Score=391.11 Aligned_cols=344 Identities=21% Similarity=0.265 Sum_probs=278.9
Q ss_pred CcccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC----------CCe
Q 011387 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGI 80 (487)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~----------~~~ 80 (487)
......++...+++...+++++ +||..++++|+..++.++.|+|+++.|.||+|||++|++|++.. +-.
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi~~-~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~ 156 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAIKE-MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTG 156 (543)
T ss_pred hhhhhHhhccccCHHHHHHHHh-cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCee
Confidence 3446678889999999999998 79999999999999999999999999999999999999999753 456
Q ss_pred EEEeCcHHHHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhh-
Q 011387 81 VLVVSPLIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH- 154 (487)
Q Consensus 81 ~lvl~P~~~L~~q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~- 154 (487)
++||+|||+|+.|...+++++ ++.+..+.++...... .+.+.. . +++ .|+|||++..+.+..
T Consensus 157 vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e---~~kl~k-~--~ni------liATPGRLlDHlqNt~ 224 (543)
T KOG0342|consen 157 VLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVE---ADKLVK-G--CNI------LIATPGRLLDHLQNTS 224 (543)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHH---HHHhhc-c--ccE------EEeCCchHHhHhhcCC
Confidence 999999999999999988873 4555555555443221 122222 2 344 677888776654322
Q ss_pred --hcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCC---
Q 011387 155 --SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN--- 228 (487)
Q Consensus 155 --~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~--- 228 (487)
-.+.++++|+||||++++.| |+.++.+ +...+| ..|.++||||.++++.+.....+.- ++..+.....
T Consensus 225 ~f~~r~~k~lvlDEADrlLd~G--F~~di~~---Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~-d~~~v~~~d~~~~ 298 (543)
T KOG0342|consen 225 GFLFRNLKCLVLDEADRLLDIG--FEEDVEQ---IIKILPKQRQTLLFSATQPSKVKDLARGALKR-DPVFVNVDDGGER 298 (543)
T ss_pred cchhhccceeEeecchhhhhcc--cHHHHHH---HHHhccccceeeEeeCCCcHHHHHHHHHhhcC-CceEeecCCCCCc
Confidence 24557899999999999999 7765555 455555 6899999999999997744444443 5555543221
Q ss_pred ----CCcceEEEEeeCchhhHHHHHHHHHHhCCC-ceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHH
Q 011387 229 ----RPNLFYEVRYKDLLDDAYADLCSVLKANGD-TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 303 (487)
Q Consensus 229 ----~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~-~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~ 303 (487)
+-+.-|.+... ...+..+..+++++.+ .++||||+|...+..+++.|+...++|..+||++++..|..+...
T Consensus 299 ~The~l~Qgyvv~~~---~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~ 375 (543)
T KOG0342|consen 299 ETHERLEQGYVVAPS---DSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFE 375 (543)
T ss_pred chhhcccceEEeccc---cchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHH
Confidence 11222333333 3457888899988855 899999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHh
Q 011387 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (487)
Q Consensus 304 f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~ 376 (487)
|++.+.-||||||+++||+|+|+|++||.||+|.+.++|+||+||+||.|+.|.+++++.+.+...++++.+-
T Consensus 376 F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~l 448 (543)
T KOG0342|consen 376 FCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKL 448 (543)
T ss_pred HhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888743
No 26
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.7e-50 Score=409.75 Aligned_cols=343 Identities=20% Similarity=0.294 Sum_probs=266.1
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCcHH
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~ 88 (487)
..|..+++++.+.+.|.. +||..|+|+|.++++.+++|+|+++.||||+|||++|++|++.. +.++||++|++
T Consensus 28 ~~~~~l~l~~~~~~~l~~-~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYS-YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred CCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 567788999999999987 79999999999999999999999999999999999999998753 56899999999
Q ss_pred HHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhhcCCccEE
Q 011387 89 ALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNLV 162 (487)
Q Consensus 89 ~L~~q~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~~~~l~~l 162 (487)
+|+.|+.+.+..++ +.+....++..... ....+.. ..+++++||+.+ ..+. .......++++
T Consensus 107 ~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~---~~~Ivv~Tp~~l------~~~l~~~~~~l~~i~lv 174 (401)
T PTZ00424 107 ELAQQIQKVVLALGDYLKVRCHACVGGTVVRD---DINKLKA---GVHMVVGTPGRV------YDMIDKRHLRVDDLKLF 174 (401)
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCcCHHH---HHHHHcC---CCCEEEECcHHH------HHHHHhCCcccccccEE
Confidence 99999988887753 33333444433222 1222222 245665555533 2221 23346779999
Q ss_pred EEeccccccccCCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHhcCCCCeEE--ec-CCCCCcceEEEEe
Q 011387 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVL--KS-SFNRPNLFYEVRY 238 (487)
Q Consensus 163 ViDEah~~~~~g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~--~~-~~~~~~~~~~v~~ 238 (487)
||||||++.+++ |+... ..+.... ++.+++++|||+++.........+ ..+..+ .. .....++...+..
T Consensus 175 ViDEah~~~~~~--~~~~~---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 247 (401)
T PTZ00424 175 ILDEADEMLSRG--FKGQI---YDVFKKLPPDVQVALFSATMPNEILELTTKFM--RDPKRILVKKDELTLEGIRQFYVA 247 (401)
T ss_pred EEecHHHHHhcc--hHHHH---HHHHhhCCCCcEEEEEEecCCHHHHHHHHHHc--CCCEEEEeCCCCcccCCceEEEEe
Confidence 999999999887 44333 3333443 578999999999987765444433 333322 11 1222333333333
Q ss_pred eCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc
Q 011387 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (487)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~ 318 (487)
......+...+..+++.....++||||+|++.++.+++.|.+.++.+..+||++++++|..+++.|++|+++|||||+++
T Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l 327 (401)
T PTZ00424 248 VEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLL 327 (401)
T ss_pred cChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccc
Confidence 33223456667777776667789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhc
Q 011387 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (487)
Q Consensus 319 ~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~ 377 (487)
++|||+|++++||++++|.|...|+||+||+||.|+.|.|+++++++|...+..+.+..
T Consensus 328 ~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~ 386 (401)
T PTZ00424 328 ARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHY 386 (401)
T ss_pred cCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988887776543
No 27
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-50 Score=372.13 Aligned_cols=356 Identities=19% Similarity=0.224 Sum_probs=271.3
Q ss_pred CcccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEEEe
Q 011387 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVV 84 (487)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl 84 (487)
.....+|..+++++++.+.|+. +|+.+++|+|..|||.++.|+|++-+|.||||||.+|.+|++.+ +--++|+
T Consensus 3 ~~t~~~F~~LGl~~Wlve~l~~-l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvl 81 (442)
T KOG0340|consen 3 RKTAKPFSILGLSPWLVEQLKA-LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVL 81 (442)
T ss_pred ccccCchhhcCccHHHHHHHHH-hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEe
Confidence 4567889999999999999998 79999999999999999999999999999999999999999986 5569999
Q ss_pred CcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCcc
Q 011387 85 SPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN 160 (487)
Q Consensus 85 ~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~ 160 (487)
+||++|+-|..+++..+ ++++..+.++...-. ........ .++++.||+.++-+..-+.=.-...+.++.
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~----qa~~L~~r--PHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIM----QAAILSDR--PHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhh----hhhhcccC--CCeEecCccccccccccCCccchhhhhcee
Confidence 99999999999998875 456655555443222 12222222 455555555443221100001123356689
Q ss_pred EEEEeccccccccCCCChHHHHHHHHHHHhCCC-CcEEEEecCCChHHHHHHHHHhcCCCCeEEecCC---CCCcce--E
Q 011387 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLF--Y 234 (487)
Q Consensus 161 ~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~-~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~~~--~ 234 (487)
++|+|||+.+++-. |. ..|..+.+..|. .+.++||||.+...............+..+.... ....+. |
T Consensus 156 flVlDEADrvL~~~--f~---d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~y 230 (442)
T KOG0340|consen 156 FLVLDEADRVLAGC--FP---DILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGY 230 (442)
T ss_pred eEEecchhhhhccc--hh---hHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhhe
Confidence 99999999998865 33 456666677775 4999999999887655222211111122222211 111222 2
Q ss_pred EEEeeCchhhHHHHHHHHHH---hCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcE
Q 011387 235 EVRYKDLLDDAYADLCSVLK---ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (487)
Q Consensus 235 ~v~~~~~~~~~~~~l~~~l~---~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~v 311 (487)
-....+ .+-..|+..++ ..+...++||+|+..+|+.++-.|...++.+..+||.|++++|...+.+|+++..+|
T Consensus 231 I~~~~~---vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~i 307 (442)
T KOG0340|consen 231 ILVSID---VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARI 307 (442)
T ss_pred eecchh---hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccE
Confidence 222222 22233444443 335778999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcccCC
Q 011387 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381 (487)
Q Consensus 312 LVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~ 381 (487)
|||||++++|+|+|.|..|||||+|.++.+|+||+||+.|+|+.|.++.++...|...+..+++.-+.+.
T Consensus 308 liaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl 377 (442)
T KOG0340|consen 308 LIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKL 377 (442)
T ss_pred EEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999988766543
No 28
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=6.1e-50 Score=388.92 Aligned_cols=339 Identities=22% Similarity=0.319 Sum_probs=282.4
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC----------CCeEE
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVL 82 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~----------~~~~l 82 (487)
...+|.+++++....+.|++. +|..++.+|+.+|+..+.|+|++..|.|||||||+|++|.|.+ +--+|
T Consensus 67 ~~~kF~dlpls~~t~kgLke~-~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGal 145 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEA-KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGAL 145 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhc-CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeE
Confidence 345889999999999999995 9999999999999999999999999999999999999999864 55699
Q ss_pred EeCcHHHHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh---hhh
Q 011387 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHS 155 (487)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~---~~~ 155 (487)
||+|||+|+.|+++.|.+.| ..+..+.++........... ..+| +|+|||++..... ..+
T Consensus 146 IISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-------~mNI------LVCTPGRLLQHmde~~~f~ 212 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-------QMNI------LVCTPGRLLQHMDENPNFS 212 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-------cCCe------EEechHHHHHHhhhcCCCC
Confidence 99999999999999999864 45566666554333222111 2455 5666776554432 334
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC-----CCC
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-----FNR 229 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-----~~~ 229 (487)
...+.++|+||||+++++| |. ..|..+...+| ..|.++||||.+..+.. ...+.+.+|..+... ...
T Consensus 213 t~~lQmLvLDEADR~LDMG--Fk---~tL~~Ii~~lP~~RQTLLFSATqt~svkd--LaRLsL~dP~~vsvhe~a~~atP 285 (758)
T KOG0343|consen 213 TSNLQMLVLDEADRMLDMG--FK---KTLNAIIENLPKKRQTLLFSATQTKSVKD--LARLSLKDPVYVSVHENAVAATP 285 (758)
T ss_pred CCcceEEEeccHHHHHHHh--HH---HHHHHHHHhCChhheeeeeecccchhHHH--HHHhhcCCCcEEEEeccccccCh
Confidence 5668999999999999999 55 56777888888 68999999999999877 677888888766432 122
Q ss_pred Ccce--EEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHh
Q 011387 230 PNLF--YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWI 305 (487)
Q Consensus 230 ~~~~--~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~ 305 (487)
.++. |.+... .++++.|..+++.+...++|||..|.+++..+++.+.++ |+++..+||+|++..|.++.+.|.
T Consensus 286 ~~L~Q~y~~v~l---~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~ 362 (758)
T KOG0343|consen 286 SNLQQSYVIVPL---EDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFV 362 (758)
T ss_pred hhhhheEEEEeh---hhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHH
Confidence 3333 333333 689999999999999999999999999999999999875 889999999999999999999999
Q ss_pred cCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHH
Q 011387 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (487)
Q Consensus 306 ~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~ 375 (487)
....-||+|||++++|+|+|.|++||.+|.|.++++|+||+||++|.+..|.+++++.+.+...+-.-++
T Consensus 363 ~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq 432 (758)
T KOG0343|consen 363 RKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQ 432 (758)
T ss_pred HhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998554443333
No 29
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=5.5e-49 Score=422.66 Aligned_cols=342 Identities=19% Similarity=0.204 Sum_probs=253.5
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC-----CCeEEEeCcHHHHHH
Q 011387 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALME 92 (487)
Q Consensus 18 ~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~~L~~ 92 (487)
.+..+++++.+.|++ .|+++|+++|.++|+.+++|+|+++.+|||||||+||++|++.. +.++|||+||++|+.
T Consensus 17 ~~~~l~~~l~~~L~~-~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~ 95 (742)
T TIGR03817 17 WPAWAHPDVVAALEA-AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAA 95 (742)
T ss_pred CCCcCCHHHHHHHHH-cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHH
Confidence 345678999999987 69999999999999999999999999999999999999998853 568999999999999
Q ss_pred HHHHHHHHc---CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEecccc
Q 011387 93 NQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (487)
Q Consensus 93 q~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~ 169 (487)
|+.+.++++ ++....+.++.....+.. +.. ..+++++||+.+..............+++++++||||||.
T Consensus 96 q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~----i~~---~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 96 DQLRAVRELTLRGVRPATYDGDTPTEERRW----ARE---HARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred HHHHHHHHhccCCeEEEEEeCCCCHHHHHH----Hhc---CCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 999999986 456666666666544322 222 2578888887654211000111112256799999999999
Q ss_pred ccc-cCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCC-CCcceEEEEeeC------
Q 011387 170 ISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKD------ 240 (487)
Q Consensus 170 ~~~-~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~~v~~~~------ 240 (487)
+.+ +|.++...+..+..+...++ +.+++++|||.++... ....+......++..... .....+.+....
T Consensus 169 ~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~--~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~ 246 (742)
T TIGR03817 169 YRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA--AASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTG 246 (742)
T ss_pred ccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH--HHHHHcCCCeEEECCCCCCcCceEEEEecCCcccccc
Confidence 865 33334444455655655554 5789999999988753 244433222222222111 111111111000
Q ss_pred ---------chhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhC--------CCceEEecCCCCHHHHHHHHHH
Q 011387 241 ---------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDD 303 (487)
Q Consensus 241 ---------~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~--------g~~~~~~h~~l~~~~R~~~~~~ 303 (487)
....+...+..+++. +.++||||+|++.++.++..|++. +..+..|||++++++|.+++++
T Consensus 247 ~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 247 ENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred ccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 012344455555553 568999999999999999998763 5678899999999999999999
Q ss_pred HhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEec--chHHHHH
Q 011387 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM--DDRRRME 371 (487)
Q Consensus 304 f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~--~d~~~~~ 371 (487)
|++|++++||||+++++|||+|++++||+|++|.+.++|+||+|||||.|+.|.++++... .|...+.
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVH 394 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999863 3444444
No 30
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-49 Score=370.72 Aligned_cols=341 Identities=21% Similarity=0.327 Sum_probs=280.4
Q ss_pred CCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------------CCeEEEeCc
Q 011387 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLVVSP 86 (487)
Q Consensus 19 ~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------------~~~~lvl~P 86 (487)
.+...+++...+++ .||.+|+|+|.++||.+|+|+|++.+|.||+|||++|++|.+.+ +..+||++|
T Consensus 224 AFq~~pevmenIkK-~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~p 302 (629)
T KOG0336|consen 224 AFQCYPEVMENIKK-TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTP 302 (629)
T ss_pred HHhhhHHHHHHHHh-ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEec
Confidence 45667889999998 59999999999999999999999999999999999999998743 567999999
Q ss_pred HHHHHHHHHHHHHH---cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhhcCCccE
Q 011387 87 LIALMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNL 161 (487)
Q Consensus 87 ~~~L~~q~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~~~~l~~ 161 (487)
|++|+.|..-...+ .|.....+.++....+..+ ++..+ ..+ +++||++++.+. ...++..+.+
T Consensus 303 treLalqie~e~~kysyng~ksvc~ygggnR~eqie---~lkrg---vei------iiatPgrlndL~~~n~i~l~siTY 370 (629)
T KOG0336|consen 303 TRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIE---DLKRG---VEI------IIATPGRLNDLQMDNVINLASITY 370 (629)
T ss_pred cHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHH---HHhcC---ceE------EeeCCchHhhhhhcCeeeeeeeEE
Confidence 99999998777665 3667776766666555433 33333 333 778888888773 4566778999
Q ss_pred EEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEe-cCCCCCcc--eEEEEe
Q 011387 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPNL--FYEVRY 238 (487)
Q Consensus 162 lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~--~~~v~~ 238 (487)
+|+||||.++++| |+|..+++ +....|+.++++.|||+++.+++.... .+.+|.++. .+.+.... ..+...
T Consensus 371 lVlDEADrMLDMg--FEpqIrki--lldiRPDRqtvmTSATWP~~VrrLa~s--Y~Kep~~v~vGsLdL~a~~sVkQ~i~ 444 (629)
T KOG0336|consen 371 LVLDEADRMLDMG--FEPQIRKI--LLDIRPDRQTVMTSATWPEGVRRLAQS--YLKEPMIVYVGSLDLVAVKSVKQNII 444 (629)
T ss_pred EEecchhhhhccc--ccHHHHHH--hhhcCCcceeeeecccCchHHHHHHHH--hhhCceEEEecccceeeeeeeeeeEE
Confidence 9999999999999 88887776 677789999999999999999884444 456666443 33332111 111112
Q ss_pred eCchhhHHHHHHHHHHhC-CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 011387 239 KDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (487)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~ 317 (487)
.....+++..+..+++.. ...++||||.++..++.|...|.-.|+.+-.+||+-++.+|+..++.|++|+++||||||.
T Consensus 445 v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDl 524 (629)
T KOG0336|consen 445 VTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDL 524 (629)
T ss_pred ecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEech
Confidence 333357777777777765 5678999999999999999999989999999999999999999999999999999999999
Q ss_pred cccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcc
Q 011387 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (487)
Q Consensus 318 ~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (487)
+++|+|++|++||++||+|.++++|+||+||+||.|+.|.++.|+...|......+++-..
T Consensus 525 aSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe 585 (629)
T KOG0336|consen 525 ASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILE 585 (629)
T ss_pred hhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988887776543
No 31
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9e-49 Score=379.67 Aligned_cols=351 Identities=21% Similarity=0.285 Sum_probs=270.0
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------------CCe
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGI 80 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------------~~~ 80 (487)
....|..+++++.+.+.|...++++.||.+|+++||.+++|+|++|.++||||||++|++|+++. +.-
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 45678899999999999999999999999999999999999999999999999999999998753 677
Q ss_pred EEEeCcHHHHHHHHHHHHHHcCCceEEecCC--CCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH---hhhh
Q 011387 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSST--QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHS 155 (487)
Q Consensus 81 ~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~---~~~~ 155 (487)
++||+|||+|+.|.++.++++.-+...+..+ .+.+.+......++.| ++| +|+|||++.... +...
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKG---iNI------LIgTPGRLvDHLknT~~i~ 284 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKG---INI------LIGTPGRLVDHLKNTKSIK 284 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcC---ceE------EEcCchHHHHHHhccchhe
Confidence 9999999999999999999964333222221 1222222233334443 555 566666654442 3445
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC-----------CCcEEEEecCCChHHHHHHHHHhcCCCCeEEe
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-----------DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-----------~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (487)
..+++++|+||||++++.| |......|-.+....+ ..+-+++|||++..+.+ ...+.+.+|..+.
T Consensus 285 ~s~LRwlVlDEaDrlleLG--fekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~r--La~~sLkDpv~I~ 360 (708)
T KOG0348|consen 285 FSRLRWLVLDEADRLLELG--FEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNR--LADLSLKDPVYIS 360 (708)
T ss_pred eeeeeEEEecchhHHHhcc--chhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHH--HhhccccCceeee
Confidence 6679999999999999999 7777766655553321 24579999999999877 6667777777665
Q ss_pred -----cCCC----------------------C-Ccc--eEEEEeeCc-hhhHHHHHHHHHHhCCCceEEEEecccchHHH
Q 011387 225 -----SSFN----------------------R-PNL--FYEVRYKDL-LDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273 (487)
Q Consensus 225 -----~~~~----------------------~-~~~--~~~v~~~~~-~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~ 273 (487)
...+ . .++ +|.+++... .-.....|....+.....++|||..+.+.++.
T Consensus 361 ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeF 440 (708)
T KOG0348|consen 361 LDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEF 440 (708)
T ss_pred ccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHH
Confidence 1111 0 111 122222210 01112223344445577799999999999999
Q ss_pred HHHHHHhC----------------------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEE
Q 011387 274 LSAYLSAG----------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331 (487)
Q Consensus 274 l~~~L~~~----------------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI 331 (487)
-+..|.+. +.+.+.+||+|++++|..++..|...+-.||.|||++++|+|+|+|++||
T Consensus 441 Hy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vV 520 (708)
T KOG0348|consen 441 HYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVV 520 (708)
T ss_pred HHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEE
Confidence 88888751 33578899999999999999999998888999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHh
Q 011387 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (487)
Q Consensus 332 ~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~ 376 (487)
.||.|.+.++|+||+||+.|.|..|.+++|+.|.+..+++.+..+
T Consensus 521 QYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 521 QYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred EeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988776554
No 32
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-49 Score=371.65 Aligned_cols=345 Identities=22% Similarity=0.312 Sum_probs=279.8
Q ss_pred CCCcccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC-----------
Q 011387 9 QSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------- 77 (487)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~----------- 77 (487)
.+.+....|+.++|.+.+++++.+ .||+.|+-+|+.+||.+++|+|+++.|.||||||++|++|.++.
T Consensus 13 ~ee~~~ktFe~~gLD~RllkAi~~-lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e 91 (569)
T KOG0346|consen 13 VEESKEKTFEEFGLDSRLLKAITK-LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGE 91 (569)
T ss_pred hhhhhhccHHHhCCCHHHHHHHHH-hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhccccc
Confidence 345556789999999999999998 69999999999999999999999999999999999999999853
Q ss_pred -CCeEEEeCcHHHHHHHHHHHHHHc------CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH
Q 011387 78 -PGIVLVVSPLIALMENQVIGLKEK------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL 150 (487)
Q Consensus 78 -~~~~lvl~P~~~L~~q~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l 150 (487)
+..++|++||++|++|.+..+.++ .+++.-+.++.+..... ...... .+| +|+||+.+..+
T Consensus 92 ~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~d~--pdI------vV~TP~~ll~~ 159 (569)
T KOG0346|consen 92 QGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALMDL--PDI------VVATPAKLLRH 159 (569)
T ss_pred ccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHccC--CCe------EEeChHHHHHH
Confidence 667999999999999998887764 23444444444433322 222222 233 67777766655
Q ss_pred Hhh---hhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC
Q 011387 151 KKI---HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS 226 (487)
Q Consensus 151 ~~~---~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~ 226 (487)
... .....++++|+||||.++.+|+. ..+..+.+.+| ..|.++||||.+.++.. .+.+.+.+|.++.-.
T Consensus 160 ~~~~~~~~~~~l~~LVvDEADLllsfGYe-----edlk~l~~~LPr~~Q~~LmSATl~dDv~~--LKkL~l~nPviLkl~ 232 (569)
T KOG0346|consen 160 LAAGVLEYLDSLSFLVVDEADLLLSFGYE-----EDLKKLRSHLPRIYQCFLMSATLSDDVQA--LKKLFLHNPVILKLT 232 (569)
T ss_pred HhhccchhhhheeeEEechhhhhhhcccH-----HHHHHHHHhCCchhhheeehhhhhhHHHH--HHHHhccCCeEEEec
Confidence 332 34566899999999999999954 56677778887 57899999999999887 888899999987532
Q ss_pred C---CCCcceEEEEeeCchhhHHHHHHHHHHhC-CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHH
Q 011387 227 F---NRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302 (487)
Q Consensus 227 ~---~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~ 302 (487)
. ..++...++.......+++..++.+++-. -.++.|||+||.+.|.++.-.|.+.|++.+.++|.|+...|..+++
T Consensus 233 e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~ 312 (569)
T KOG0346|consen 233 EGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIE 312 (569)
T ss_pred cccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHH
Confidence 1 11222222222223478888888877754 4567899999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEEcC-----------------------------------ccccccccCCCcEEEEeCCCCCHHHHHHHHh
Q 011387 303 DWISSRKQVVVATV-----------------------------------AFGMGIDRKDVRLVCHFNIPKSMEAFYQESG 347 (487)
Q Consensus 303 ~f~~g~~~vLVaT~-----------------------------------~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~G 347 (487)
+|..|-++++|||| -.++|||+.+|..|||||+|.+...|+||+|
T Consensus 313 QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvG 392 (569)
T KOG0346|consen 313 QFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVG 392 (569)
T ss_pred HhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhcc
Confidence 99999999999999 3579999999999999999999999999999
Q ss_pred ccCCCCCCceEEEEEecchHHHHHHH
Q 011387 348 RAGRDQLPSKSLLYYGMDDRRRMEFI 373 (487)
Q Consensus 348 RagR~g~~g~~i~~~~~~d~~~~~~i 373 (487)
|++|+|++|.++.|+.+.+......+
T Consensus 393 RTaRg~n~GtalSfv~P~e~~g~~~l 418 (569)
T KOG0346|consen 393 RTARGNNKGTALSFVSPKEEFGKESL 418 (569)
T ss_pred ccccCCCCCceEEEecchHHhhhhHH
Confidence 99999999999999999988744333
No 33
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-49 Score=360.38 Aligned_cols=345 Identities=23% Similarity=0.302 Sum_probs=281.7
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCcHH
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~ 88 (487)
..|+++.|.++++..+-+ .||+.|.|+|+++||.++.|+|+++.|..|+|||.+|.+|.|.+ .-.++|++|++
T Consensus 85 ~efEd~~Lkr~LLmgIfe-~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtr 163 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFE-KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTR 163 (459)
T ss_pred ccHHHhhhhHHHHHHHHH-hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecc
Confidence 357789999999999988 59999999999999999999999999999999999999999976 34699999999
Q ss_pred HHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCCccEE
Q 011387 89 ALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLV 162 (487)
Q Consensus 89 ~L~~q~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l~~l 162 (487)
+|+-|.....+. .|+.+....++.+.... + .++--+.+.+++||+++..+.+ ....+...++
T Consensus 164 elALQtSqvc~~lskh~~i~vmvttGGT~lrDD------I------~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~l 231 (459)
T KOG0326|consen 164 ELALQTSQVCKELSKHLGIKVMVTTGGTSLRDD------I------MRLNQTVHLVVGTPGRILDLAKKGVADLSDCVIL 231 (459)
T ss_pred hhhHHHHHHHHHHhcccCeEEEEecCCcccccc------e------eeecCceEEEEcCChhHHHHHhcccccchhceEE
Confidence 999988777665 46667666666544321 1 2222233347888888877743 4456678899
Q ss_pred EEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEe--cCCCC--CcceEEEE
Q 011387 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNR--PNLFYEVR 237 (487)
Q Consensus 163 ViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~~--~~~~~~v~ 237 (487)
|+||||.+++.. |.+. +..+...+| +.|++++|||-+-.+...+.+.+ .+|..+. ..... -..+|.++
T Consensus 232 V~DEADKlLs~~--F~~~---~e~li~~lP~~rQillySATFP~tVk~Fm~~~l--~kPy~INLM~eLtl~GvtQyYafV 304 (459)
T KOG0326|consen 232 VMDEADKLLSVD--FQPI---VEKLISFLPKERQILLYSATFPLTVKGFMDRHL--KKPYEINLMEELTLKGVTQYYAFV 304 (459)
T ss_pred Eechhhhhhchh--hhhH---HHHHHHhCCccceeeEEecccchhHHHHHHHhc--cCcceeehhhhhhhcchhhheeee
Confidence 999999998744 6654 455667777 78999999999998888666655 4444332 11111 22344444
Q ss_pred eeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 011387 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (487)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~ 317 (487)
.. ..++..|..++....-...||||||.+.+|-+|+.+.+.|+.++++|+.|-++.|..++.+|++|..+.|||||.
T Consensus 305 ~e---~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL 381 (459)
T KOG0326|consen 305 EE---RQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDL 381 (459)
T ss_pred ch---hhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhh
Confidence 43 356666766666666677899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcccCCC
Q 011387 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382 (487)
Q Consensus 318 ~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~ 382 (487)
+.+|||+++|++|||||+|++.++|+||+||+||.|..|.++-+.+-+|...+..++++......
T Consensus 382 ~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~ 446 (459)
T KOG0326|consen 382 FTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIK 446 (459)
T ss_pred hhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999988766443
No 34
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-47 Score=370.16 Aligned_cols=351 Identities=21% Similarity=0.288 Sum_probs=267.3
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHHHhHhcC---------------
Q 011387 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--------------- 77 (487)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~-~dvlv~apTGsGKTl~~~lp~l~~--------------- 77 (487)
.-.|..++++.+++++|++ .||+.|+++|..++|++..| .|++..|.|||||||+|-+|++..
T Consensus 180 vsAW~~l~lp~~iL~aL~~-~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSN-LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred hHHHhcCCCCHHHHHHHHh-cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 3457788999999999998 79999999999999999998 799999999999999999999861
Q ss_pred --CC--eEEEeCcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHH
Q 011387 78 --PG--IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149 (487)
Q Consensus 78 --~~--~~lvl~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~ 149 (487)
.. ..||++|||+|+.|..+.+... ++.+..+.++.....+..+... .+++ +|+|||++..
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~I--------VVATPGRlwe 326 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDI--------VVATPGRLWE 326 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCE--------EEecchHHHH
Confidence 33 4999999999999999888773 7888888888777665554432 3233 7889987766
Q ss_pred HHh-----hhhcCCccEEEEeccccccccCCCChHHHHHHHHHHH--hCCCCcEEEEecCCChHH---------------
Q 011387 150 LKK-----IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN--YLPDVPILALTATAAPKV--------------- 207 (487)
Q Consensus 150 l~~-----~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~--~~~~~~~i~lSAT~~~~~--------------- 207 (487)
+.. ..+...++++|+||||++++.|| |...-..|..+.. .-+..|.+.||||.+-..
T Consensus 327 li~e~n~~l~~~k~vkcLVlDEaDRmvekgh-F~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~ 405 (731)
T KOG0347|consen 327 LIEEDNTHLGNFKKVKCLVLDEADRMVEKGH-FEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKED 405 (731)
T ss_pred HHHhhhhhhhhhhhceEEEEccHHHHhhhcc-HHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhh
Confidence 632 23456689999999999999998 5544444443331 223678999999976432
Q ss_pred -----HHHHHHHhcCCC-CeEEecCCCCCc---ceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHH
Q 011387 208 -----QKDVMESLCLQN-PLVLKSSFNRPN---LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYL 278 (487)
Q Consensus 208 -----~~~i~~~l~~~~-~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L 278 (487)
.+.+++.+++.. |.++........ +..... ......+--.|+.+|-.. ++++|||||+++.+.+|+-.|
T Consensus 406 ~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I-~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L 483 (731)
T KOG0347|consen 406 ELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLI-ECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLL 483 (731)
T ss_pred hhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhh-cCCccccceeEEEEEeec-CCceEEEechHHHHHHHHHHH
Confidence 233344444443 233322111000 000000 000001111122222233 456999999999999999999
Q ss_pred HhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceE
Q 011387 279 SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 358 (487)
Q Consensus 279 ~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~ 358 (487)
+..+++...+|+.|.+++|.+.+++|.+....||||||+++||+|||+|.|||||.+|.+.+.|+||+||++|++..|..
T Consensus 484 ~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvs 563 (731)
T KOG0347|consen 484 NNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVS 563 (731)
T ss_pred hhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecchHHHHHHHHHhcccC
Q 011387 359 LLYYGMDDRRRMEFILSKNQSK 380 (487)
Q Consensus 359 i~~~~~~d~~~~~~i~~~~~~~ 380 (487)
++++.|.+...+..+-+....+
T Consensus 564 vml~~P~e~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 564 VMLCGPQEVGPLKKLCKTLKKK 585 (731)
T ss_pred EEEeChHHhHHHHHHHHHHhhc
Confidence 9999999988877776554443
No 35
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-46 Score=367.93 Aligned_cols=343 Identities=21% Similarity=0.309 Sum_probs=270.2
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC----------------CC
Q 011387 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------------PG 79 (487)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~----------------~~ 79 (487)
.|..-.+.+.+...++. .|+..++|+|+.+|+.+.+|+|.+++|+||+|||.+|++|++.. .+
T Consensus 75 ~f~~~~l~~~l~~ni~~-~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKR-SGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred cccccchhHHHhhcccc-ccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 45566677777777776 59999999999999999999999999999999999999999843 36
Q ss_pred eEEEeCcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--h
Q 011387 80 IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--I 153 (487)
Q Consensus 80 ~~lvl~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~ 153 (487)
.++|++||++|+.|.+++.+++ +.....+.++..... +.......+++ .++|||++..+.+ .
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~------q~~~~~~gcdI------lvaTpGrL~d~~e~g~ 221 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGA------QLRFIKRGCDI------LVATPGRLKDLIERGK 221 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhh------hhhhhccCccE------EEecCchhhhhhhcce
Confidence 8999999999999999999884 344444444422221 11112223445 6777887777743 4
Q ss_pred hhcCCccEEEEeccccccc-cCCCChHHHHHHHHHHHhC--CCCcEEEEecCCChHHHHHHHHHhcCCCCe---EEecCC
Q 011387 154 HSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQNPL---VLKSSF 227 (487)
Q Consensus 154 ~~~~~l~~lViDEah~~~~-~g~~f~~~~~~l~~l~~~~--~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~---~~~~~~ 227 (487)
..+..++++|+||||.+++ +| |.|..+.+..-.... .+.+.++||||-+..+......++.-. -+ +-+...
T Consensus 222 i~l~~~k~~vLDEADrMlD~mg--F~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~-yi~laV~rvg~ 298 (482)
T KOG0335|consen 222 ISLDNCKFLVLDEADRMLDEMG--FEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDN-YIFLAVGRVGS 298 (482)
T ss_pred eehhhCcEEEecchHHhhhhcc--ccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhcc-ceEEEEeeecc
Confidence 4566788999999999999 77 777666654333332 267899999999999888444444322 22 233455
Q ss_pred CCCcceEEEEeeCchhhHHHHHHHHHHhCC----C-----ceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHH
Q 011387 228 NRPNLFYEVRYKDLLDDAYADLCSVLKANG----D-----TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 298 (487)
Q Consensus 228 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~----~-----~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~ 298 (487)
...|+...+...... ++...|++++.... . +.++|||.|++.+..++..|...++++..+||.-++.+|.
T Consensus 299 ~~~ni~q~i~~V~~~-~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~ 377 (482)
T KOG0335|consen 299 TSENITQKILFVNEM-EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIERE 377 (482)
T ss_pred ccccceeEeeeecch-hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHH
Confidence 677887777666543 45566666665332 2 3799999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHH
Q 011387 299 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (487)
Q Consensus 299 ~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~ 375 (487)
+.++.|++|...+||||+++++|+|+|+|++||+||+|.+..+|+||+||+||.|..|.+..|++..+....+.+.+
T Consensus 378 ~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~ 454 (482)
T KOG0335|consen 378 QALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVE 454 (482)
T ss_pred HHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999766665554443
No 36
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-45 Score=339.37 Aligned_cols=351 Identities=19% Similarity=0.252 Sum_probs=280.7
Q ss_pred CCCcccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhHhcC------CCe
Q 011387 9 QSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGI 80 (487)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~--~dvlv~apTGsGKTl~~~lp~l~~------~~~ 80 (487)
+.+.+...|+.+.|.+++++.+.. +||..|+.+|+.++|.++.. ++++..+..|+|||.||.+.+|.+ -+.
T Consensus 84 sPlyS~ksFeeL~LkPellkgly~-M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ 162 (477)
T KOG0332|consen 84 SPLYSAKSFEELRLKPELLKGLYA-MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQ 162 (477)
T ss_pred CCccccccHHhhCCCHHHHhHHHH-hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCC
Confidence 456678899999999999999997 89999999999999999986 799999999999999999999976 677
Q ss_pred EEEeCcHHHHHHHHHHHHHHcCCce----EEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH---Hhh
Q 011387 81 VLVVSPLIALMENQVIGLKEKGIAG----EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKI 153 (487)
Q Consensus 81 ~lvl~P~~~L~~q~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l---~~~ 153 (487)
.+.|+|+++|+.|..+.+.+.|-.. .+...+.... +...-..+| ++.||+-...| .+.
T Consensus 163 ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~---------rG~~i~eqI------viGTPGtv~Dlm~klk~ 227 (477)
T KOG0332|consen 163 CICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK---------RGNKLTEQI------VIGTPGTVLDLMLKLKC 227 (477)
T ss_pred ceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc---------cCCcchhhe------eeCCCccHHHHHHHHHh
Confidence 9999999999999999999976544 2111111000 000111344 45555544344 245
Q ss_pred hhcCCccEEEEeccccccc-cCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEec-CCCCC
Q 011387 154 HSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRP 230 (487)
Q Consensus 154 ~~~~~l~~lViDEah~~~~-~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~ 230 (487)
+....++.+|+|||+.+.+ .| |. ..-..+....| +.++++||||-...+.......+.-.++..++. .....
T Consensus 228 id~~kikvfVlDEAD~Mi~tqG--~~---D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~ 302 (477)
T KOG0332|consen 228 IDLEKIKVFVLDEADVMIDTQG--FQ---DQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALD 302 (477)
T ss_pred hChhhceEEEecchhhhhhccc--cc---ccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhcccc
Confidence 6677899999999999876 44 22 22234555566 899999999999999887777665555555543 34455
Q ss_pred cceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCc
Q 011387 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (487)
Q Consensus 231 ~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (487)
+++.-........++++.|.++.....-++.||||.|++.+..++..|.+.|..+..+||+|..++|..+.+.|+.|..+
T Consensus 303 ~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k 382 (477)
T KOG0332|consen 303 NIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK 382 (477)
T ss_pred chhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce
Confidence 66544454555578999999887766677899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccccccCCCcEEEEeCCCC------CHHHHHHHHhccCCCCCCceEEEEEecc-hHHHHHHHHHhcccC
Q 011387 311 VVVATVAFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKNQSK 380 (487)
Q Consensus 311 vLVaT~~~~~GiDip~v~~VI~~~~p~------s~~~y~Qr~GRagR~g~~g~~i~~~~~~-d~~~~~~i~~~~~~~ 380 (487)
|||+|++++||||++.|++|||||+|- +.++|+||+||+||.|+.|.++-+++.. +...+..|.+....+
T Consensus 383 VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~ 459 (477)
T KOG0332|consen 383 VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMK 459 (477)
T ss_pred EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhc
Confidence 999999999999999999999999994 8899999999999999999999988766 455566666665443
No 37
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=6.9e-46 Score=346.80 Aligned_cols=334 Identities=21% Similarity=0.365 Sum_probs=263.4
Q ss_pred cccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc--------------C
Q 011387 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------------K 77 (487)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~--------------~ 77 (487)
.+...|..+.++..+++.|++ -|+.+|+|+|-+.+|-+++|+|++-+|-||||||++|.+|.+. .
T Consensus 167 PPIksF~eMKFP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~E 245 (610)
T KOG0341|consen 167 PPIKSFKEMKFPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGE 245 (610)
T ss_pred CchhhhhhccCCHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCC
Confidence 355667788899999999998 5999999999999999999999999999999999999999763 1
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHc-------C---CceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhH
Q 011387 78 PGIVLVVSPLIALMENQVIGLKEK-------G---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147 (487)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~ 147 (487)
++..+||||+++|+.|+.+-+..+ | +++....++....+.-... ..+ +.+ +++||+++
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v---~~G---vHi------vVATPGRL 313 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVV---RRG---VHI------VVATPGRL 313 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHH---hcC---eeE------EEcCcchH
Confidence 788999999999999987765542 2 2333344444444432222 222 333 78889988
Q ss_pred HHHH--hhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEe
Q 011387 148 SKLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (487)
Q Consensus 148 ~~l~--~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (487)
..+. +...+.-.+++++||||++.++| |..+.+.+ ...|. ..|.++||||++..++. +..-.+..|+.+.
T Consensus 314 ~DmL~KK~~sLd~CRyL~lDEADRmiDmG--FEddir~i---F~~FK~QRQTLLFSATMP~KIQ~--FAkSALVKPvtvN 386 (610)
T KOG0341|consen 314 MDMLAKKIMSLDACRYLTLDEADRMIDMG--FEDDIRTI---FSFFKGQRQTLLFSATMPKKIQN--FAKSALVKPVTVN 386 (610)
T ss_pred HHHHHHhhccHHHHHHhhhhhHHHHhhcc--chhhHHHH---HHHHhhhhheeeeeccccHHHHH--HHHhhcccceEEe
Confidence 7774 34455557789999999999999 66655554 34443 68899999999998766 3334456666654
Q ss_pred cCC---CCCcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHH
Q 011387 225 SSF---NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVL 301 (487)
Q Consensus 225 ~~~---~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~ 301 (487)
..- ..-++..++.+.. .+.++-.|++-+++. ..+++|||..+.+++.++++|--.|..++.+|||-++++|...+
T Consensus 387 VGRAGAAsldViQevEyVk-qEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai 464 (610)
T KOG0341|consen 387 VGRAGAASLDVIQEVEYVK-QEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAI 464 (610)
T ss_pred cccccccchhHHHHHHHHH-hhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHH
Confidence 321 1122222222221 145666677776654 45799999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchH
Q 011387 302 DDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (487)
Q Consensus 302 ~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~ 367 (487)
+.|+.|+-+||||||+++.|+|+|++.||||||+|..+++|+||+||+||.|+.|.+.+|.+....
T Consensus 465 ~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 465 EAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred HHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccch
Confidence 999999999999999999999999999999999999999999999999999999999999987643
No 38
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-43 Score=341.12 Aligned_cols=358 Identities=19% Similarity=0.269 Sum_probs=296.0
Q ss_pred CCCCCCCCCCcccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC----
Q 011387 2 KKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---- 77 (487)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~---- 77 (487)
+.+..-.....+-..|+.+++.+.+..++... -|.+++|+|.+++|..+.|+|++-+|.||||||.+|++|++.+
T Consensus 210 nlrv~g~s~~rpvtsfeh~gfDkqLm~airk~-Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq 288 (731)
T KOG0339|consen 210 NLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKS-EYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQ 288 (731)
T ss_pred cceeccCCCCCCcchhhhcCchHHHHHHHhhh-hcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcch
Confidence 33444445555666778889999999999884 8999999999999999999999999999999999999999854
Q ss_pred -------CCeEEEeCcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhh
Q 011387 78 -------PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146 (487)
Q Consensus 78 -------~~~~lvl~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~ 146 (487)
++..+|++||++|+.|...+.+++ |+....+.++.+..++..... .+ ..+ +|+||++
T Consensus 289 ~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---~g---~Ei------vVaTPgR 356 (731)
T KOG0339|consen 289 PELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---EG---AEI------VVATPGR 356 (731)
T ss_pred hhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh---cC---CeE------EEechHH
Confidence 678999999999999999888775 788888888887776543322 11 222 7788888
Q ss_pred HHHHH--hhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeE-E
Q 011387 147 MSKLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV-L 223 (487)
Q Consensus 147 ~~~l~--~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~-~ 223 (487)
+..+. +..++.++.++|+|||+++.+.| |.+..+.+..- ..|+.|.++||||....+.......|. +|+. +
T Consensus 357 lid~VkmKatn~~rvS~LV~DEadrmfdmG--fe~qVrSI~~h--irpdrQtllFsaTf~~kIe~lard~L~--dpVrvV 430 (731)
T KOG0339|consen 357 LIDMVKMKATNLSRVSYLVLDEADRMFDMG--FEPQVRSIKQH--IRPDRQTLLFSATFKKKIEKLARDILS--DPVRVV 430 (731)
T ss_pred HHHHHHhhcccceeeeEEEEechhhhhccc--cHHHHHHHHhh--cCCcceEEEeeccchHHHHHHHHHHhc--CCeeEE
Confidence 87774 45667889999999999999999 77776665432 236899999999999998886666554 4432 2
Q ss_pred ecCCC--CCcceEEEEeeCchhhHHHHHHHHHHhC-CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHH
Q 011387 224 KSSFN--RPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300 (487)
Q Consensus 224 ~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~ 300 (487)
..+.. -..+...|......+.++..|...|... ..+++|||+.-+..++.++..|...|+++..+||++.+.+|.++
T Consensus 431 qg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ 510 (731)
T KOG0339|consen 431 QGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEV 510 (731)
T ss_pred EeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHH
Confidence 22222 2344455555555578888888777654 45789999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcc
Q 011387 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (487)
Q Consensus 301 ~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (487)
+.+|+.+...|||+||++++|+|+|+++.||+||+-++++.|.||+||+||.|..|.++++++..|......+++...
T Consensus 511 ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe 588 (731)
T KOG0339|consen 511 LSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLE 588 (731)
T ss_pred HHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999988777777643
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.8e-43 Score=378.81 Aligned_cols=326 Identities=22% Similarity=0.291 Sum_probs=242.2
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHH
Q 011387 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALM 91 (487)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~-~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~ 91 (487)
+++++++++.+.+.+++ .|+.+|+|+|.++++. +++|+|++++||||||||++|.+|++. .+++++|++|+++|+
T Consensus 2 ~~~~l~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa 80 (737)
T PRK02362 2 KIAELPLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALA 80 (737)
T ss_pred ChhhcCCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHH
Confidence 35678899999999998 6999999999999998 778999999999999999999999775 478999999999999
Q ss_pred HHHHHHHHHc---CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCCccEEEEec
Q 011387 92 ENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDE 166 (487)
Q Consensus 92 ~q~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l~~lViDE 166 (487)
.|+++.++.+ |+.+..+.++...... .+ ...+++++||| .+..+.+ ......++++||||
T Consensus 81 ~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~l----~~~~IiV~Tpe------k~~~llr~~~~~l~~v~lvViDE 145 (737)
T PRK02362 81 SEKFEEFERFEELGVRVGISTGDYDSRDE-----WL----GDNDIIVATSE------KVDSLLRNGAPWLDDITCVVVDE 145 (737)
T ss_pred HHHHHHHHHhhcCCCEEEEEeCCcCcccc-----cc----CCCCEEEECHH------HHHHHHhcChhhhhhcCEEEEEC
Confidence 9999999886 7777777665432211 00 12456555554 4444433 12346799999999
Q ss_pred cccccccCCCChHHHHH-HHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEE--------
Q 011387 167 AHCISSWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR-------- 237 (487)
Q Consensus 167 ah~~~~~g~~f~~~~~~-l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~-------- 237 (487)
+|.+.+.+ +.+.+.. +..++...++.+++++|||+++. .++..+++... +...+....+...+.
T Consensus 146 ~H~l~d~~--rg~~le~il~rl~~~~~~~qii~lSATl~n~--~~la~wl~~~~---~~~~~rpv~l~~~v~~~~~~~~~ 218 (737)
T PRK02362 146 VHLIDSAN--RGPTLEVTLAKLRRLNPDLQVVALSATIGNA--DELADWLDAEL---VDSEWRPIDLREGVFYGGAIHFD 218 (737)
T ss_pred ccccCCCc--chHHHHHHHHHHHhcCCCCcEEEEcccCCCH--HHHHHHhCCCc---ccCCCCCCCCeeeEecCCeeccc
Confidence 99998744 4555544 34455556789999999999764 45667665321 111100000100000
Q ss_pred ------eeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCC-----------------------------
Q 011387 238 ------YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG----------------------------- 282 (487)
Q Consensus 238 ------~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g----------------------------- 282 (487)
........+..+.+.++ .++++||||+|++.|+.+++.|....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 296 (737)
T PRK02362 219 DSQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSK 296 (737)
T ss_pred cccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccH
Confidence 00000123333444333 46789999999999999998886431
Q ss_pred -------CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEE----eC-----CCCCHHHHHHHH
Q 011387 283 -------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-----IPKSMEAFYQES 346 (487)
Q Consensus 283 -------~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~----~~-----~p~s~~~y~Qr~ 346 (487)
..+.++||||++++|..+++.|++|.++|||||+++++|||+|++++||+ |+ .|.+..+|.||+
T Consensus 297 ~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~ 376 (737)
T PRK02362 297 DLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMA 376 (737)
T ss_pred HHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHh
Confidence 36889999999999999999999999999999999999999999999997 65 688999999999
Q ss_pred hccCCCCCC--ceEEEEEecch
Q 011387 347 GRAGRDQLP--SKSLLYYGMDD 366 (487)
Q Consensus 347 GRagR~g~~--g~~i~~~~~~d 366 (487)
|||||.|.. |.+++++...+
T Consensus 377 GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 377 GRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred hcCCCCCCCCCceEEEEecCch
Confidence 999999865 88999987653
No 40
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.8e-42 Score=373.13 Aligned_cols=334 Identities=21% Similarity=0.213 Sum_probs=257.1
Q ss_pred CCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcH
Q 011387 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPL 87 (487)
Q Consensus 17 ~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~------~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~ 87 (487)
..++....++...+.+.|||+ +|+.|.++|+.++++ +|.+++||||+|||.+|++|++. .+.+++|++||
T Consensus 431 ~~~~~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT 509 (926)
T TIGR00580 431 GHAFPPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPT 509 (926)
T ss_pred CCCCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCc
Confidence 334556677888888889995 999999999999875 79999999999999999988764 58899999999
Q ss_pred HHHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEE
Q 011387 88 IALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (487)
Q Consensus 88 ~~L~~q~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lV 163 (487)
++|+.|+++.+++ +++....+++.....+.......+..+. .+++++||..+ .+.....+++++|
T Consensus 510 ~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~--~dIVIGTp~ll---------~~~v~f~~L~llV 578 (926)
T TIGR00580 510 TLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK--IDILIGTHKLL---------QKDVKFKDLGLLI 578 (926)
T ss_pred HHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC--ceEEEchHHHh---------hCCCCcccCCEEE
Confidence 9999999999887 3567777888777777777777777665 67777776432 2334566799999
Q ss_pred EeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC-CCCCcceEEEEeeCch
Q 011387 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKDLL 242 (487)
Q Consensus 164 iDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~v~~~~~~ 242 (487)
|||+|++ |.. ....+....+++++++||||+.+..... ...+..++.++... ..+..+...+.....
T Consensus 579 IDEahrf---gv~------~~~~L~~~~~~~~vL~~SATpiprtl~~--~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~- 646 (926)
T TIGR00580 579 IDEEQRF---GVK------QKEKLKELRTSVDVLTLSATPIPRTLHM--SMSGIRDLSIIATPPEDRLPVRTFVMEYDP- 646 (926)
T ss_pred eeccccc---chh------HHHHHHhcCCCCCEEEEecCCCHHHHHH--HHhcCCCcEEEecCCCCccceEEEEEecCH-
Confidence 9999994 422 2233444446889999999998877653 33455566555433 334444333332221
Q ss_pred hhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcccc
Q 011387 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (487)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~ 320 (487)
......+...+. .+++++|||++++.++.+++.|++. +.++..+||+|++++|.+++++|.+|+.+|||||+++++
T Consensus 647 ~~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~ 724 (926)
T TIGR00580 647 ELVREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIET 724 (926)
T ss_pred HHHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhc
Confidence 111222333332 4578999999999999999999985 788999999999999999999999999999999999999
Q ss_pred ccccCCCcEEEEeCCCC-CHHHHHHHHhccCCCCCCceEEEEEecc------hHHHHHHHHHh
Q 011387 321 GIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD------DRRRMEFILSK 376 (487)
Q Consensus 321 GiDip~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~~~~~~------d~~~~~~i~~~ 376 (487)
|||+|++++||+++.|. +..+|+||+||+||.|+.|.|++++... ..++++.+.+.
T Consensus 725 GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 725 GIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred ccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 99999999999999875 7889999999999999999999998543 34555555443
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=5e-42 Score=375.91 Aligned_cols=320 Identities=23% Similarity=0.279 Sum_probs=229.6
Q ss_pred hhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------------CCeEEEeCcHHH
Q 011387 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLVVSPLIA 89 (487)
Q Consensus 22 l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------------~~~~lvl~P~~~ 89 (487)
+++.+.+.+++ +|..|+|+|+++++.+++|+|+++.||||||||++|.+|++.. +..+|||+|+++
T Consensus 18 l~~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHH
Confidence 45666677665 6778999999999999999999999999999999999998732 346999999999
Q ss_pred HHHHHHHHHHH---------------c-CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh-
Q 011387 90 LMENQVIGLKE---------------K-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK- 152 (487)
Q Consensus 90 L~~q~~~~l~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~- 152 (487)
|+.|+.+.+.. . ++.....+++.....+..... ...+++++||+.+. .+..
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~------~~p~IlVtTPE~L~------~ll~~ 163 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK------KPPHILITTPESLA------ILLNS 163 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh------CCCCEEEecHHHHH------HHhcC
Confidence 99999876542 1 455667777776655433221 12577777777542 2211
Q ss_pred ---hhhcCCccEEEEecccccccc--CCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHhcCC------CC
Q 011387 153 ---IHSRGLLNLVAIDEAHCISSW--GHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQ------NP 220 (487)
Q Consensus 153 ---~~~~~~l~~lViDEah~~~~~--g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~------~~ 220 (487)
...+..+++|||||+|.+.+. |..+... +..+.... ++.+++++|||.++. ..+..++... .+
T Consensus 164 ~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~---L~rL~~l~~~~~q~IglSATl~~~--~~va~~L~~~~~~~~~r~ 238 (876)
T PRK13767 164 PKFREKLRTVKWVIVDEIHSLAENKRGVHLSLS---LERLEELAGGEFVRIGLSATIEPL--EEVAKFLVGYEDDGEPRD 238 (876)
T ss_pred hhHHHHHhcCCEEEEechhhhccCccHHHHHHH---HHHHHHhcCCCCeEEEEecccCCH--HHHHHHhcCccccCCCCc
Confidence 112467899999999999863 3323333 33344333 467899999999763 3445555431 22
Q ss_pred e-EEecCCCCCcceEEEEee-------C---chhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhC------CC
Q 011387 221 L-VLKSSFNRPNLFYEVRYK-------D---LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------GI 283 (487)
Q Consensus 221 ~-~~~~~~~~~~~~~~v~~~-------~---~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~------g~ 283 (487)
. ++...+.+ .....+... . ........+.+.++ .+.++||||||++.|+.++..|.+. +.
T Consensus 239 ~~iv~~~~~k-~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~ 315 (876)
T PRK13767 239 CEIVDARFVK-PFDIKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDED 315 (876)
T ss_pred eEEEccCCCc-cceEEEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhcccc
Confidence 2 22222222 121111110 0 01122333444443 3467999999999999999999873 46
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCC-CCCceEEEEE
Q 011387 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYY 362 (487)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~-g~~g~~i~~~ 362 (487)
.+..+||+|++++|..+++.|++|+++|||||+++++|||+|++++||+++.|.+...|+||+||+||. |..+.+.++.
T Consensus 316 ~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 316 NIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred ceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 799999999999999999999999999999999999999999999999999999999999999999986 4455555554
Q ss_pred e
Q 011387 363 G 363 (487)
Q Consensus 363 ~ 363 (487)
.
T Consensus 396 ~ 396 (876)
T PRK13767 396 V 396 (876)
T ss_pred c
Confidence 3
No 42
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.4e-41 Score=359.53 Aligned_cols=317 Identities=21% Similarity=0.260 Sum_probs=244.0
Q ss_pred hhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHH
Q 011387 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALME 92 (487)
Q Consensus 22 l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~------~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~ 92 (487)
....+.+.+.+.++|. ||+.|+++++.+.++ .+++++||||||||++|++|++. .+.+++|++||++|+.
T Consensus 246 ~~~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~ 324 (681)
T PRK10917 246 YDGELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAE 324 (681)
T ss_pred CChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHH
Confidence 3456777777789995 999999999999876 48999999999999999998864 4779999999999999
Q ss_pred HHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccc
Q 011387 93 NQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (487)
Q Consensus 93 q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah 168 (487)
|+++.++++ ++++..++++.....+......+..+. .+++++||..+. ......+++++||||+|
T Consensus 325 Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~--~~IvVgT~~ll~---------~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 325 QHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE--ADIVIGTHALIQ---------DDVEFHNLGLVIIDEQH 393 (681)
T ss_pred HHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC--CCEEEchHHHhc---------ccchhcccceEEEechh
Confidence 999998874 688899999999888888888877765 677666665442 22335679999999999
Q ss_pred cccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEec-CCCCCcceEEEEeeCchhhHHH
Q 011387 169 CISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAYA 247 (487)
Q Consensus 169 ~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ 247 (487)
++ |...+ ..+.....+.++++||||+.+.... ....+..+...+.. ...+..+...+.........++
T Consensus 394 rf---g~~qr------~~l~~~~~~~~iL~~SATp~prtl~--~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~ 462 (681)
T PRK10917 394 RF---GVEQR------LALREKGENPHVLVMTATPIPRTLA--MTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYE 462 (681)
T ss_pred hh---hHHHH------HHHHhcCCCCCEEEEeCCCCHHHHH--HHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHH
Confidence 85 32222 2344444468899999999887644 22233333333332 2234444444443332223334
Q ss_pred HHHHHHHhCCCceEEEEecccc--------hHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 011387 248 DLCSVLKANGDTCAIVYCLERT--------TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (487)
Q Consensus 248 ~l~~~l~~~~~~~~iIf~~s~~--------~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~ 317 (487)
.+.+.+ ..+.+++|||++.+ .++.+++.|.+. +.++..+||+|++++|.+++++|.+|+.+|||||++
T Consensus 463 ~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~v 540 (681)
T PRK10917 463 RIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTV 540 (681)
T ss_pred HHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcc
Confidence 444433 35678999999654 456778888765 478999999999999999999999999999999999
Q ss_pred cccccccCCCcEEEEeCCCC-CHHHHHHHHhccCCCCCCceEEEEEe
Q 011387 318 FGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYG 363 (487)
Q Consensus 318 ~~~GiDip~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~~~~ 363 (487)
+++|||+|++++||+++.|. +...|.|++||+||.|..|.|++++.
T Consensus 541 ie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 541 IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred eeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99999999999999999987 68889999999999999999999995
No 43
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-42 Score=335.14 Aligned_cols=355 Identities=21% Similarity=0.276 Sum_probs=254.7
Q ss_pred ccccCCCCChhHHHHHH----------HHHHcCCCCCcHHHHHHHHHHHc---------CCCEEEEcCCCchhhHHHHHh
Q 011387 13 QTQKNKPLHEKEALVKL----------LRWHFGHAQFRDKQLDAIQAVLS---------GRDCFCLMPTGGGKSMCYQIP 73 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~----------l~~~fg~~~~~~~Q~~~i~~~l~---------~~dvlv~apTGsGKTl~~~lp 73 (487)
+...|+.++.++..... +.+ ++++...|+|..+++.++. .+|++|.||||||||++|.+|
T Consensus 125 slq~~s~l~~se~k~~~d~lea~~~q~l~k-~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iP 203 (620)
T KOG0350|consen 125 SLQIFSVLGKSEMKNLEDTLEATIDQLLVK-MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIP 203 (620)
T ss_pred ceeeeeccchhHHHHHHHHHHHHHHHHHHH-hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhH
Confidence 44555566666554433 776 5999999999999999862 589999999999999999999
Q ss_pred HhcC-------CCeEEEeCcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCC--CcccEEEeCccc
Q 011387 74 ALAK-------PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGK--PSLRLLYVTPEL 140 (487)
Q Consensus 74 ~l~~-------~~~~lvl~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~il~~tpe~ 140 (487)
+++. .-+++||+|+++|+.|.++.+.++ |+.+..+.+....... ...+.... ..++| +
T Consensus 204 IVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E---~~qL~~~~~~~~~DI------l 274 (620)
T KOG0350|consen 204 IVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDE---ARQLASDPPECRIDI------L 274 (620)
T ss_pred HHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHH---HHHHhcCCCccccce------E
Confidence 9853 457999999999999999999985 4444444444333221 12222222 12444 6
Q ss_pred ccChhhHHHHH---hhhhcCCccEEEEeccccccc-----cCCCCh---------------------HHHHHHHHHHHh-
Q 011387 141 TATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS-----WGHDFR---------------------PSYRKLSSLRNY- 190 (487)
Q Consensus 141 v~t~~~~~~l~---~~~~~~~l~~lViDEah~~~~-----~g~~f~---------------------~~~~~l~~l~~~- 190 (487)
|+|||++-... +...+..|+++||||||++++ |-.... +.-.-+..+...
T Consensus 275 VaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~ 354 (620)
T KOG0350|consen 275 VATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKL 354 (620)
T ss_pred EcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhc
Confidence 67777665443 344567799999999999965 210000 000011111111
Q ss_pred ---CCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC------CCCCcceEEEEeeCchhhHHHHHHHHHHhCCCceE
Q 011387 191 ---LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261 (487)
Q Consensus 191 ---~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~ 261 (487)
+|....+.+|||.+....+ ...+.+..|..+... +..|....+........-+...+..++......++
T Consensus 355 ~~~~~~l~kL~~satLsqdP~K--l~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~ 432 (620)
T KOG0350|consen 355 GKLYPPLWKLVFSATLSQDPSK--LKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRT 432 (620)
T ss_pred CCcCchhHhhhcchhhhcChHH--HhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceE
Confidence 2233367888888766545 455555555433211 11111110011111112344567777888888899
Q ss_pred EEEecccchHHHHHHHHH----hCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCC
Q 011387 262 IVYCLERTTCDELSAYLS----AGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337 (487)
Q Consensus 262 iIf~~s~~~~~~l~~~L~----~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~ 337 (487)
|+|+++.+.+.+++..|+ .....+..|.|+++.+.|.+.++.|..|+++||||+|+++||||+.+|+.||+||+|.
T Consensus 433 lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~ 512 (620)
T KOG0350|consen 433 LCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPA 512 (620)
T ss_pred EEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCc
Confidence 999999999999999887 2356777899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhccc
Q 011387 338 SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (487)
Q Consensus 338 s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (487)
+..+|+||+||++|+|+.|.|+++....+...+..++++...
T Consensus 513 ~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 513 SDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred hhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 999999999999999999999999999999999999998765
No 44
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-42 Score=358.01 Aligned_cols=348 Identities=21% Similarity=0.340 Sum_probs=281.0
Q ss_pred CcccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC-----------CC
Q 011387 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PG 79 (487)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~-----------~~ 79 (487)
..+...|...+++..++..+++ +||..++|+|.+|||++++|+|||.+|.||||||++|++|++.+ ++
T Consensus 361 pkpv~sW~q~gl~~~il~tlkk-l~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGP 439 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKK-LGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGP 439 (997)
T ss_pred CcccchHhhCCchHHHHHHHHH-hcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCc
Confidence 3455678888999999999976 89999999999999999999999999999999999999999854 78
Q ss_pred eEEEeCcHHHHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--h-
Q 011387 80 IVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--K- 152 (487)
Q Consensus 80 ~~lvl~P~~~L~~q~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~- 152 (487)
.+||++||++|+.|..+.++. +++.+....++......... +..+ . +++|+|||+...+. +
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiae---lkRg---~------eIvV~tpGRmiD~l~~n~ 507 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAE---LKRG---A------EIVVCTPGRMIDILCANS 507 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHH---HhcC---C------ceEEeccchhhhhHhhcC
Confidence 899999999999999988776 47777777666655544332 2222 3 33667777654442 2
Q ss_pred --hhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEec---CC
Q 011387 153 --IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SF 227 (487)
Q Consensus 153 --~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~ 227 (487)
..++.++.++|+||||++.+.| |.|....| +...-|..|.+++|||.+..+...-...+. .|+.+.. +.
T Consensus 508 grvtnlrR~t~lv~deaDrmfdmg--fePq~~~I--i~nlrpdrQtvlfSatfpr~m~~la~~vl~--~Pveiiv~~~sv 581 (997)
T KOG0334|consen 508 GRVTNLRRVTYLVLDEADRMFDMG--FEPQITRI--LQNLRPDRQTVLFSATFPRSMEALARKVLK--KPVEIIVGGRSV 581 (997)
T ss_pred Cccccccccceeeechhhhhheec--cCcccchH--HhhcchhhhhhhhhhhhhHHHHHHHHHhhc--CCeeEEEcccee
Confidence 2334445699999999999888 77765552 333356889999999999887665455555 4443221 12
Q ss_pred CCCcceEEEEeeCchhhHHHHHHHHHHhC-CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc
Q 011387 228 NRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (487)
Q Consensus 228 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (487)
.-..+...+........++..|.++|... ...++||||.+...|..+.+.|.+.|+.+..+||+.++.+|..+++.|++
T Consensus 582 V~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~ 661 (997)
T KOG0334|consen 582 VCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKN 661 (997)
T ss_pred EeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhc
Confidence 22344444444444578888888888765 67889999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhc
Q 011387 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (487)
Q Consensus 307 g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~ 377 (487)
|.+.+||||+.+++|+|++++..|||||+|.-.+.|+||+||+||.|+.|.|++|..+++......|.+..
T Consensus 662 ~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 662 GVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred cCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887766666654
No 45
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.7e-41 Score=381.86 Aligned_cols=333 Identities=15% Similarity=0.207 Sum_probs=257.1
Q ss_pred hHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC---CCeEEEeCcHHHHHHHHHHHHH
Q 011387 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLK 99 (487)
Q Consensus 23 ~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q~~~~l~ 99 (487)
-+++.+.+++.+|+ +|++.|+++++.+++|+|++++||||+|||++++++++.. +.+++||+||++|+.|+++.++
T Consensus 65 ~~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~ 143 (1638)
T PRK14701 65 VEEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIE 143 (1638)
T ss_pred HHHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHH
Confidence 34566777888899 6999999999999999999999999999999887776643 6689999999999999999998
Q ss_pred Hc------CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEecccccccc
Q 011387 100 EK------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (487)
Q Consensus 100 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~ 173 (487)
.+ ++.+..++++....++...+..+..+. .+++++||+.+.. .+.... ...++++||||||++++|
T Consensus 144 ~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~--~dILV~TPgrL~~-----~~~~l~-~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 144 SFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGD--FDILVTTAQFLAR-----NFPEMK-HLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECCchhHH-----hHHHHh-hCCCCEEEEECceecccc
Confidence 84 456677888888777766666666554 6788887764422 112222 266999999999999999
Q ss_pred CC---------CChHHHHH----H-------------------HHHHHhCCCCc--EEEEecCCChHHHHHHHHHhcCCC
Q 011387 174 GH---------DFRPSYRK----L-------------------SSLRNYLPDVP--ILALTATAAPKVQKDVMESLCLQN 219 (487)
Q Consensus 174 g~---------~f~~~~~~----l-------------------~~l~~~~~~~~--~i~lSAT~~~~~~~~i~~~l~~~~ 219 (487)
|+ +|++++.. + ......+|+.+ .+.+|||.++. .++...+ .+
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~--~~ 291 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLY--RE 291 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHh--hc
Confidence 87 79888864 1 11122344433 46789998864 2223322 34
Q ss_pred CeEEecCCCCCcce---EEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccch---HHHHHHHHHhCCCceEEecCCCC
Q 011387 220 PLVLKSSFNRPNLF---YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLN 293 (487)
Q Consensus 220 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~---~~~l~~~L~~~g~~~~~~h~~l~ 293 (487)
+..+..+..++++. ..+.... ......+.++++.. +..+||||+|++. |+.+++.|.+.|+++..+||+
T Consensus 292 ~l~f~v~~~~~~lr~i~~~yi~~~--~~~k~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 292 LLGFEVGSGRSALRNIVDVYLNPE--KIIKEHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred CeEEEecCCCCCCCCcEEEEEECC--HHHHHHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 44455555555443 2222222 12225677777765 4679999999986 489999999999999999995
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcC----ccccccccCC-CcEEEEeCCCC---CHHHHHHHH-------------hccCCC
Q 011387 294 DKARSSVLDDWISSRKQVVVATV----AFGMGIDRKD-VRLVCHFNIPK---SMEAFYQES-------------GRAGRD 352 (487)
Q Consensus 294 ~~~R~~~~~~f~~g~~~vLVaT~----~~~~GiDip~-v~~VI~~~~p~---s~~~y~Qr~-------------GRagR~ 352 (487)
|...+++|++|+++|||||+ +++||||+|+ |++|||||+|+ +++.|.|.. ||+||+
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 88999999999999999995 7899999999 99999999999 999998887 999999
Q ss_pred CCCceEEEEEecchHHHHHHHHHh
Q 011387 353 QLPSKSLLYYGMDDRRRMEFILSK 376 (487)
Q Consensus 353 g~~g~~i~~~~~~d~~~~~~i~~~ 376 (487)
|.++.+++.+...+...++.++++
T Consensus 444 g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 444 GIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred CCcchhHHHhHHHHHHHHHHHhcc
Confidence 999999888888888888887775
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6.6e-41 Score=351.88 Aligned_cols=324 Identities=24% Similarity=0.287 Sum_probs=258.3
Q ss_pred ChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC-----------CCeEEEeCcHHH
Q 011387 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLVVSPLIA 89 (487)
Q Consensus 21 ~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~-----------~~~~lvl~P~~~ 89 (487)
.+++.+.+.+++. |.+|||.|.++|+.+.+|+|++++||||||||+++.+|++.. +-.+|+|+|++|
T Consensus 7 ~l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 7 ILDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84 (814)
T ss_pred hcCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHH
Confidence 4677788888885 789999999999999999999999999999999999998743 246999999999
Q ss_pred HHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccc---cChhhHHHHHhhhhcCCccEE
Q 011387 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT---ATPGFMSKLKKIHSRGLLNLV 162 (487)
Q Consensus 90 L~~q~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v---~t~~~~~~l~~~~~~~~l~~l 162 (487)
|.+|...+|.. +|++....+++.+..++.... ....+|+++|||.+ .+... +.+ .+.++.++
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~------~~PPdILiTTPEsL~lll~~~~---~r~--~l~~vr~V 153 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKML------KNPPHILITTPESLAILLNSPK---FRE--LLRDVRYV 153 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhcc------CCCCcEEEeChhHHHHHhcCHH---HHH--HhcCCcEE
Confidence 99999988765 689998888888887765432 24588999999943 22221 111 23568999
Q ss_pred EEeccccccc--cCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCC-CeEEecCCCCCcceEEEEee
Q 011387 163 AIDEAHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN-PLVLKSSFNRPNLFYEVRYK 239 (487)
Q Consensus 163 ViDEah~~~~--~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~v~~~ 239 (487)
||||.|.+.+ .|.... ..|.++....++.+.+++|||..+. .++.+++.... +..+.......+..+.+...
T Consensus 154 IVDEiHel~~sKRG~~Ls---l~LeRL~~l~~~~qRIGLSATV~~~--~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p 228 (814)
T COG1201 154 IVDEIHALAESKRGVQLA---LSLERLRELAGDFQRIGLSATVGPP--EEVAKFLVGFGDPCEIVDVSAAKKLEIKVISP 228 (814)
T ss_pred Eeehhhhhhccccchhhh---hhHHHHHhhCcccEEEeehhccCCH--HHHHHHhcCCCCceEEEEcccCCcceEEEEec
Confidence 9999999964 565433 4455666666688999999999865 56688887765 33333222233333333322
Q ss_pred Cch--------hhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCC-CceEEecCCCCHHHHHHHHHHHhcCCCc
Q 011387 240 DLL--------DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (487)
Q Consensus 240 ~~~--------~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g-~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (487)
... ...+..+.++++++. .+|||+|||..+|.++..|++.+ ..+..+||+++.+.|..++++|++|+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lr 306 (814)
T COG1201 229 VEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELK 306 (814)
T ss_pred CCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCce
Confidence 211 335666777777765 79999999999999999999987 8899999999999999999999999999
Q ss_pred EEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCC-CCCCceEEEEEec
Q 011387 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR-DQLPSKSLLYYGM 364 (487)
Q Consensus 311 vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR-~g~~g~~i~~~~~ 364 (487)
.+|||+.++.|||+.+++.|||++.|+++..++||+||+|+ .|..+.++++...
T Consensus 307 avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 307 AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999999999999999999996 5777888888665
No 47
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.4e-40 Score=351.17 Aligned_cols=315 Identities=19% Similarity=0.246 Sum_probs=236.5
Q ss_pred ChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHH
Q 011387 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALM 91 (487)
Q Consensus 21 ~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~------~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~ 91 (487)
....+....+.+.++| +||+.|+++++.++.+ .+.+++||||||||++|++|++. .+.+++|++||++|+
T Consensus 219 ~~~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA 297 (630)
T TIGR00643 219 NPSEELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILA 297 (630)
T ss_pred CCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHH
Confidence 3334555555556899 6999999999999875 25899999999999999988764 478999999999999
Q ss_pred HHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEecc
Q 011387 92 ENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEA 167 (487)
Q Consensus 92 ~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEa 167 (487)
.|+.+.++++ |+++..++++.....+......+..+. .+++++||..+. +.....+++++||||+
T Consensus 298 ~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~--~~IiVgT~~ll~---------~~~~~~~l~lvVIDEa 366 (630)
T TIGR00643 298 EQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ--IHLVVGTHALIQ---------EKVEFKRLALVIIDEQ 366 (630)
T ss_pred HHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC--CCEEEecHHHHh---------ccccccccceEEEech
Confidence 9999998873 688999999988888777777777765 677666665432 2334567999999999
Q ss_pred ccccccCCCChHHHHHHHHHHHhCC---CCcEEEEecCCChHHHHHHHHHhcCCCCeEEe-cCCCCCcceEEEEeeCchh
Q 011387 168 HCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPNLFYEVRYKDLLD 243 (487)
Q Consensus 168 h~~~~~g~~f~~~~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~v~~~~~~~ 243 (487)
|++ |...+ ..+....+ ..++++||||+.+..... ...+..+...+. ....+..+...+.....
T Consensus 367 H~f---g~~qr------~~l~~~~~~~~~~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~-- 433 (630)
T TIGR00643 367 HRF---GVEQR------KKLREKGQGGFTPHVLVMSATPIPRTLAL--TVYGDLDTSIIDELPPGRKPITTVLIKHDE-- 433 (630)
T ss_pred hhc---cHHHH------HHHHHhcccCCCCCEEEEeCCCCcHHHHH--HhcCCcceeeeccCCCCCCceEEEEeCcch--
Confidence 985 32222 22334433 678999999998765432 111211222222 12223334333333221
Q ss_pred hHHHHHHHHHHh--CCCceEEEEecccc--------hHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcE
Q 011387 244 DAYADLCSVLKA--NGDTCAIVYCLERT--------TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (487)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~iIf~~s~~--------~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~v 311 (487)
...+...+.. ..+.+++|||++.+ .++.+++.|.+. +..+..+||+|++++|.+++++|++|+.+|
T Consensus 434 --~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~I 511 (630)
T TIGR00643 434 --KDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDI 511 (630)
T ss_pred --HHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCE
Confidence 1334444433 24678999999764 466777888763 678999999999999999999999999999
Q ss_pred EEEcCccccccccCCCcEEEEeCCCC-CHHHHHHHHhccCCCCCCceEEEEE
Q 011387 312 VVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYY 362 (487)
Q Consensus 312 LVaT~~~~~GiDip~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~~~ 362 (487)
||||+++++|||+|++++||+++.|. +...|.|++||+||.|++|.|++++
T Consensus 512 LVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 512 LVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred EEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 99999999999999999999999987 7889999999999999999999999
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.2e-40 Score=365.45 Aligned_cols=335 Identities=21% Similarity=0.208 Sum_probs=251.3
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchhhHHHHHhHh---cCCCeEEEeCc
Q 011387 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSP 86 (487)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~------~dvlv~apTGsGKTl~~~lp~l---~~~~~~lvl~P 86 (487)
+...+..+.+..+.+...|+| .+|+.|.++|+.++.+ +|++++|+||+|||.+|+.++. ..+.+++|++|
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvP 657 (1147)
T PRK10689 579 EGFAFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVP 657 (1147)
T ss_pred cCCCCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 334455566777778778999 5999999999999987 7999999999999999887654 45889999999
Q ss_pred HHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEE
Q 011387 87 LIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (487)
Q Consensus 87 ~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~l 162 (487)
|++|+.|+++.+++. ++....+++..+..++......+..+. .+++++||..+. ......+++++
T Consensus 658 T~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~--~dIVVgTp~lL~---------~~v~~~~L~lL 726 (1147)
T PRK10689 658 TTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK--IDILIGTHKLLQ---------SDVKWKDLGLL 726 (1147)
T ss_pred cHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC--CCEEEECHHHHh---------CCCCHhhCCEE
Confidence 999999999998863 466777778878777777777666554 678888775332 22334579999
Q ss_pred EEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCC-CCcceEEEEeeCc
Q 011387 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKDL 241 (487)
Q Consensus 163 ViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~~v~~~~~ 241 (487)
||||+|++ |.. ....+....+++++++||||+.+....... .++.++.++..... +..+...+.....
T Consensus 727 VIDEahrf---G~~------~~e~lk~l~~~~qvLl~SATpiprtl~l~~--~gl~d~~~I~~~p~~r~~v~~~~~~~~~ 795 (1147)
T PRK10689 727 IVDEEHRF---GVR------HKERIKAMRADVDILTLTATPIPRTLNMAM--SGMRDLSIIATPPARRLAVKTFVREYDS 795 (1147)
T ss_pred EEechhhc---chh------HHHHHHhcCCCCcEEEEcCCCCHHHHHHHH--hhCCCcEEEecCCCCCCCceEEEEecCc
Confidence 99999996 422 223344445689999999999988766333 35566666654332 2333322222211
Q ss_pred hhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc
Q 011387 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (487)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~ 319 (487)
......+...+. .+++++||||+++.++.+++.|++. +.++..+||+|++++|.+++.+|.+|+++|||||++++
T Consensus 796 -~~~k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIie 872 (1147)
T PRK10689 796 -LVVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 (1147)
T ss_pred -HHHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhh
Confidence 111222222222 3567999999999999999999987 77899999999999999999999999999999999999
Q ss_pred cccccCCCcEEEEeCCC-CCHHHHHHHHhccCCCCCCceEEEEEecc------hHHHHHHHHHh
Q 011387 320 MGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKSLLYYGMD------DRRRMEFILSK 376 (487)
Q Consensus 320 ~GiDip~v~~VI~~~~p-~s~~~y~Qr~GRagR~g~~g~~i~~~~~~------d~~~~~~i~~~ 376 (487)
+|||+|++++||..+.. .++..|+||+||+||.|+.|.|++++... ..++++.+.+.
T Consensus 873 rGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~ 936 (1147)
T PRK10689 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936 (1147)
T ss_pred cccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHh
Confidence 99999999999954432 35678999999999999999999998543 34455544443
No 49
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=7.6e-42 Score=337.53 Aligned_cols=341 Identities=19% Similarity=0.274 Sum_probs=278.8
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCc
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P 86 (487)
....|+.+.++++++..|++. ||..++++|..|||+++.+-|++|.|..|+|||++|.+.++.. ....+|++|
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn-~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~P 101 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRN-AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTP 101 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhh-cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEec
Confidence 566788999999999999985 9999999999999999999999999999999999998777653 677999999
Q ss_pred HHHHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhhcCCc
Q 011387 87 LIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLL 159 (487)
Q Consensus 87 ~~~L~~q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~~~~l 159 (487)
||+++-|..+.+... |.++....++..........+ . .+| +|+|||++..|. ...+.+.+
T Consensus 102 TREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-----~--~rI------vIGtPGRi~qL~el~~~n~s~v 168 (980)
T KOG4284|consen 102 TREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-----Q--TRI------VIGTPGRIAQLVELGAMNMSHV 168 (980)
T ss_pred chhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-----h--ceE------EecCchHHHHHHHhcCCCccce
Confidence 999999999888875 456655555554433222111 1 333 778888888884 45667789
Q ss_pred cEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcce----E
Q 011387 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF----Y 234 (487)
Q Consensus 160 ~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~----~ 234 (487)
+++|+||||.+.+.+. |+ ..+..+...+| ..|++++|||.+......+.+ .|++|..++.+...+.++ |
T Consensus 169 rlfVLDEADkL~~t~s-fq---~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk--~mrdp~lVr~n~~d~~L~GikQy 242 (980)
T KOG4284|consen 169 RLFVLDEADKLMDTES-FQ---DDINIIINSLPQIRQVAAFSATYPRNLDNLLSK--FMRDPALVRFNADDVQLFGIKQY 242 (980)
T ss_pred eEEEeccHHhhhchhh-HH---HHHHHHHHhcchhheeeEEeccCchhHHHHHHH--HhcccceeecccCCceeechhhe
Confidence 9999999999998654 55 45667788888 678999999999988776665 456777776655555442 1
Q ss_pred EEEeeC------chhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC
Q 011387 235 EVRYKD------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (487)
Q Consensus 235 ~v~~~~------~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (487)
.+.... ....+++.|-++++..+-...||||+....|+-++..|...|++|.++.|.|++.+|..+++.++.-.
T Consensus 243 v~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~ 322 (980)
T KOG4284|consen 243 VVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFR 322 (980)
T ss_pred eeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhce
Confidence 111111 12357777888888888889999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchH-HHHHHH
Q 011387 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-RRMEFI 373 (487)
Q Consensus 309 ~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~-~~~~~i 373 (487)
++|||+||..++|||-++|+.|||.|.|.+.++|.||+|||||.|..|.+++|+..... +.+..+
T Consensus 323 ~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 323 VRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred EEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999876643 444433
No 50
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-42 Score=321.23 Aligned_cols=342 Identities=21% Similarity=0.327 Sum_probs=271.8
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCcH
Q 011387 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (487)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~ 87 (487)
-+.|.+++|.+++++.+.. |||++|+.+|+.||.++.+|.|+.+.+++|+|||.+|.+++++. ...+++++|+
T Consensus 25 vdsfddm~L~e~LLrgiy~-yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPt 103 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYA-YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPT 103 (397)
T ss_pred hhhhhhcCCCHHHHhHHHh-hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcch
Confidence 4678999999999999998 79999999999999999999999999999999999999999876 5679999999
Q ss_pred HHHHHHHHHHHHHcCC----ceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCCccE
Q 011387 88 IALMENQVIGLKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (487)
Q Consensus 88 ~~L~~q~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l~~ 161 (487)
++|+.|..+....+|- .+....++........ .+... +...++.||++...+.+ ......+++
T Consensus 104 reLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~---~i~~~--------~~hivvGTpgrV~dml~~~~l~~~~iKm 172 (397)
T KOG0327|consen 104 RELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQ---ALLKD--------KPHIVVGTPGRVFDMLNRGSLSTDGIKM 172 (397)
T ss_pred HHHHHHHHHHHHhhhcccceeeeeecCcccchhhhh---hhhcc--------CceeecCCchhHHHhhccccccccceeE
Confidence 9999999988777543 3332333222221111 11111 11226778887766643 334556899
Q ss_pred EEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCC---CcceEEEE
Q 011387 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR---PNLFYEVR 237 (487)
Q Consensus 162 lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~~~~~v~ 237 (487)
+|+|||+.++..| |+.. +..+.+..| ++|++++|||.++++.. ...-.+.+|..+....+. ..+.....
T Consensus 173 fvlDEaDEmLs~g--fkdq---I~~if~~lp~~vQv~l~SAT~p~~vl~--vt~~f~~~pv~i~vkk~~ltl~gikq~~i 245 (397)
T KOG0327|consen 173 FVLDEADEMLSRG--FKDQ---IYDIFQELPSDVQVVLLSATMPSDVLE--VTKKFMREPVRILVKKDELTLEGIKQFYI 245 (397)
T ss_pred EeecchHhhhccc--hHHH---HHHHHHHcCcchhheeecccCcHHHHH--HHHHhccCceEEEecchhhhhhheeeeee
Confidence 9999999999977 6654 444555555 78999999999999877 444455666654432222 22222122
Q ss_pred eeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 011387 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (487)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~ 317 (487)
.... +.++..|.++.+ .-...+|||||+..+..+...|...+..+..+|+.|.+.+|..++..|++|+.+|||.|+.
T Consensus 246 ~v~k-~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl 322 (397)
T KOG0327|consen 246 NVEK-EEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDL 322 (397)
T ss_pred eccc-cccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccc
Confidence 2211 237777888777 4456799999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhc
Q 011387 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (487)
Q Consensus 318 ~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~ 377 (487)
+++|+|+..+..||+|++|...++|+||+||+||.|++|.++.++...|...++.+.+..
T Consensus 323 ~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y 382 (397)
T KOG0327|consen 323 LARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFY 382 (397)
T ss_pred cccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhc
Confidence 999999999999999999999999999999999999999999999999999988887543
No 51
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4e-40 Score=356.82 Aligned_cols=329 Identities=22% Similarity=0.289 Sum_probs=237.9
Q ss_pred CCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEcCCCchhhHHHHHhHhc----CCCeEEEeCcHHHHH
Q 011387 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALM 91 (487)
Q Consensus 17 ~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~-~l~~~dvlv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~ 91 (487)
++++++++.+.+.+++ .|+.+|+|+|.++++. +++|+|+++.||||||||++|.+|++. .++++|+|+|+++|+
T Consensus 3 ~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa 81 (720)
T PRK00254 3 VDELRVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALA 81 (720)
T ss_pred HHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 4567889999999998 6999999999999986 789999999999999999999999864 378999999999999
Q ss_pred HHHHHHHHH---cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCCccEEEEec
Q 011387 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDE 166 (487)
Q Consensus 92 ~q~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l~~lViDE 166 (487)
.|+++.++. +|+++..++++...... .. + ..+++++||+ .+..+.+ .....+++++||||
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~------~~-~--~~~IiV~Tpe------~~~~ll~~~~~~l~~l~lvViDE 146 (720)
T PRK00254 82 EEKYREFKDWEKLGLRVAMTTGDYDSTDE------WL-G--KYDIIIATAE------KFDSLLRHGSSWIKDVKLVVADE 146 (720)
T ss_pred HHHHHHHHHHhhcCCEEEEEeCCCCCchh------hh-c--cCCEEEEcHH------HHHHHHhCCchhhhcCCEEEEcC
Confidence 999988875 47777777766543211 01 1 2556655555 3333322 12346799999999
Q ss_pred cccccccCCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCC-cceEEEE------e
Q 011387 167 AHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVR------Y 238 (487)
Q Consensus 167 ah~~~~~g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~v~------~ 238 (487)
+|.+.+++. .+. +..+...+ ++.+++++|||+++. .++..+++... +... .+| .+...+. .
T Consensus 147 ~H~l~~~~r--g~~---le~il~~l~~~~qiI~lSATl~n~--~~la~wl~~~~---~~~~-~rpv~l~~~~~~~~~~~~ 215 (720)
T PRK00254 147 IHLIGSYDR--GAT---LEMILTHMLGRAQILGLSATVGNA--EELAEWLNAEL---VVSD-WRPVKLRKGVFYQGFLFW 215 (720)
T ss_pred cCccCCccc--hHH---HHHHHHhcCcCCcEEEEEccCCCH--HHHHHHhCCcc---ccCC-CCCCcceeeEecCCeeec
Confidence 999987653 333 33344443 468999999999763 56677775431 1111 111 1110110 0
Q ss_pred eCc-----hhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhC--------------------------------
Q 011387 239 KDL-----LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-------------------------------- 281 (487)
Q Consensus 239 ~~~-----~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~-------------------------------- 281 (487)
.+. .......+.+.++ .++++||||+|++.|+.++..|...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 293 (720)
T PRK00254 216 EDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKA 293 (720)
T ss_pred cCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHH
Confidence 000 0112233444444 3568999999999999888666421
Q ss_pred -CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEE-------eCCCC-CHHHHHHHHhccCCC
Q 011387 282 -GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------FNIPK-SMEAFYQESGRAGRD 352 (487)
Q Consensus 282 -g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~-------~~~p~-s~~~y~Qr~GRagR~ 352 (487)
...+.++||+|++++|..+++.|++|.++|||||+++++|||+|.+++||+ ++.|. +..+|.||+|||||.
T Consensus 294 l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~ 373 (720)
T PRK00254 294 LRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRP 373 (720)
T ss_pred HhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCC
Confidence 235899999999999999999999999999999999999999999999994 45543 678999999999996
Q ss_pred C--CCceEEEEEecchH-HHHHHHH
Q 011387 353 Q--LPSKSLLYYGMDDR-RRMEFIL 374 (487)
Q Consensus 353 g--~~g~~i~~~~~~d~-~~~~~i~ 374 (487)
| ..|.++++....+. +.++.++
T Consensus 374 ~~d~~G~~ii~~~~~~~~~~~~~~~ 398 (720)
T PRK00254 374 KYDEVGEAIIVATTEEPSKLMERYI 398 (720)
T ss_pred CcCCCceEEEEecCcchHHHHHHHH
Confidence 5 67899999876552 3344443
No 52
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-41 Score=332.31 Aligned_cols=342 Identities=19% Similarity=0.257 Sum_probs=261.2
Q ss_pred CChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC-----------CCeEEEeCcHH
Q 011387 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLVVSPLI 88 (487)
Q Consensus 20 ~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~-----------~~~~lvl~P~~ 88 (487)
+.....++..+.. .||..|+|.|.+++|.++.+++++.+||||+|||++|.+|++.+ +-+++|++|++
T Consensus 141 ~~~~~~ll~nl~~-~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptr 219 (593)
T KOG0344|consen 141 YSMNKRLLENLQE-LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTR 219 (593)
T ss_pred hhhcHHHHHhHhh-CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchH
Confidence 3445667777776 49999999999999999999999999999999999999998853 46799999999
Q ss_pred HHHHHHHHHHHHcCCc------eEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhh----hhcCC
Q 011387 89 ALMENQVIGLKEKGIA------GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGL 158 (487)
Q Consensus 89 ~L~~q~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~----~~~~~ 158 (487)
+|++|.+.++.++.+. +...........+..... . ..+++ .+.||.++..+... .+...
T Consensus 220 eLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~---~--~k~di------li~TP~ri~~~~~~~~~~idl~~ 288 (593)
T KOG0344|consen 220 ELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLS---D--EKYDI------LISTPMRIVGLLGLGKLNIDLSK 288 (593)
T ss_pred HHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhH---H--HHHHH------HhcCHHHHHHHhcCCCccchhhe
Confidence 9999999999987533 111111111111100000 0 11233 56677665555443 35677
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCC---CCcceEE
Q 011387 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYE 235 (487)
Q Consensus 159 l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~~~~~ 235 (487)
+.++|+||||.+.+. ..|......+-..+.. |++.+-+||||.+..+.+ +..+.+.++..+..+.. ...+...
T Consensus 289 V~~lV~dEaD~lfe~-~~f~~Qla~I~sac~s-~~i~~a~FSat~~~~VEE--~~~~i~~~~~~vivg~~~sa~~~V~Qe 364 (593)
T KOG0344|consen 289 VEWLVVDEADLLFEP-EFFVEQLADIYSACQS-PDIRVALFSATISVYVEE--WAELIKSDLKRVIVGLRNSANETVDQE 364 (593)
T ss_pred eeeEeechHHhhhCh-hhHHHHHHHHHHHhcC-cchhhhhhhccccHHHHH--HHHHhhccceeEEEecchhHhhhhhhh
Confidence 889999999999875 1255444444333332 678888999999988866 44444444443332221 1122233
Q ss_pred EEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHH-HhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011387 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (487)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L-~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVa 314 (487)
.........++-.+.+++...-..+++||+.+.+.|.+|...| --.++.+..+||+.++.+|.+.+++|+.|++.||||
T Consensus 365 lvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLic 444 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLIC 444 (593)
T ss_pred heeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEe
Confidence 3333333577888889998888889999999999999999999 566899999999999999999999999999999999
Q ss_pred cCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhc
Q 011387 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (487)
Q Consensus 315 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~ 377 (487)
|+.+++|||+.+++.||+||+|.+..+|+||+||+||.|+.|.+++||+..|..+++.+..-.
T Consensus 445 Tdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 445 TDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred hhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988776543
No 53
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.8e-39 Score=348.69 Aligned_cols=335 Identities=21% Similarity=0.223 Sum_probs=234.1
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHH
Q 011387 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALME 92 (487)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~ 92 (487)
++.++++++++.+.+.. .|++ ++++|.++++.+.+|++++++||||||||+++.++++. .++++|+++|+++|+.
T Consensus 2 ~~~~~~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~ 79 (674)
T PRK01172 2 KISDLGYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAM 79 (674)
T ss_pred cHhhcCCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHH
Confidence 35677899999999987 5886 99999999999999999999999999999999888764 4789999999999999
Q ss_pred HHHHHHHH---cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCCccEEEEecc
Q 011387 93 NQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEA 167 (487)
Q Consensus 93 q~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l~~lViDEa 167 (487)
|+++.+++ .|..+....++...... .+ ...+++++||+ .+..+.. .....+++++|||||
T Consensus 80 q~~~~~~~l~~~g~~v~~~~G~~~~~~~-----~~----~~~dIiv~Tpe------k~~~l~~~~~~~l~~v~lvViDEa 144 (674)
T PRK01172 80 EKYEELSRLRSLGMRVKISIGDYDDPPD-----FI----KRYDVVILTSE------KADSLIHHDPYIINDVGLIVADEI 144 (674)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCCCCChh-----hh----ccCCEEEECHH------HHHHHHhCChhHHhhcCEEEEecc
Confidence 99998876 36666555544332111 01 12456555554 4433322 223567899999999
Q ss_pred ccccccCCCChHHHHHHH-HHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEe-----eCc
Q 011387 168 HCISSWGHDFRPSYRKLS-SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY-----KDL 241 (487)
Q Consensus 168 h~~~~~g~~f~~~~~~l~-~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~-----~~~ 241 (487)
|.+.+.+ +.+.+..+. .++...++.+++++|||+++. .++.++++... +...+....+...+.. .+.
T Consensus 145 H~l~d~~--rg~~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~~~~---~~~~~r~vpl~~~i~~~~~~~~~~ 217 (674)
T PRK01172 145 HIIGDED--RGPTLETVLSSARYVNPDARILALSATVSNA--NELAQWLNASL---IKSNFRPVPLKLGILYRKRLILDG 217 (674)
T ss_pred hhccCCC--ccHHHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhCCCc---cCCCCCCCCeEEEEEecCeeeecc
Confidence 9998754 334444432 233334578999999999764 45667765331 1111111111111111 000
Q ss_pred hhhHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhCC-------------------------CceEEecCCCCH
Q 011387 242 LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG-------------------------ISCAAYHAGLND 294 (487)
Q Consensus 242 ~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g-------------------------~~~~~~h~~l~~ 294 (487)
.......+..+++. ..++++||||+|++.|+.+++.|.+.. ..+.++||+|++
T Consensus 218 ~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~ 297 (674)
T PRK01172 218 YERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSN 297 (674)
T ss_pred cccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCH
Confidence 00011112233332 246789999999999999999886531 247889999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCC---------CCCHHHHHHHHhccCCCCC--CceEEEEEe
Q 011387 295 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI---------PKSMEAFYQESGRAGRDQL--PSKSLLYYG 363 (487)
Q Consensus 295 ~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~---------p~s~~~y~Qr~GRagR~g~--~g~~i~~~~ 363 (487)
++|..+++.|++|.++|||||+++++|+|+|+.++|| .+. |.+..+|.||+|||||.|. .|.+++++.
T Consensus 298 ~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~ 376 (674)
T PRK01172 298 EQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAA 376 (674)
T ss_pred HHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEec
Confidence 9999999999999999999999999999999865555 332 4588999999999999984 566777765
Q ss_pred cch-HHHHHHHHH
Q 011387 364 MDD-RRRMEFILS 375 (487)
Q Consensus 364 ~~d-~~~~~~i~~ 375 (487)
..+ ...++.++.
T Consensus 377 ~~~~~~~~~~~l~ 389 (674)
T PRK01172 377 SPASYDAAKKYLS 389 (674)
T ss_pred CcccHHHHHHHHc
Confidence 443 555555553
No 54
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9e-41 Score=315.96 Aligned_cols=342 Identities=19% Similarity=0.238 Sum_probs=274.2
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC-------CCeEEEeCc
Q 011387 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------PGIVLVVSP 86 (487)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~-------~~~~lvl~P 86 (487)
.-.|..++|+..+.+++.+. ||..|+|+|++.||.+++++|+...+-||||||.||++|++++ +.++++++|
T Consensus 20 ~g~fqsmgL~~~v~raI~kk-g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsp 98 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKK-GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSP 98 (529)
T ss_pred CCCccccCCCHHHHHHHHHh-hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccC
Confidence 45688999999999999985 9999999999999999999999999999999999999999865 468999999
Q ss_pred HHHHHHHHHHHHHHcCC----ceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhhcCCcc
Q 011387 87 LIALMENQVIGLKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLN 160 (487)
Q Consensus 87 ~~~L~~q~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~~~~l~ 160 (487)
+++|+.|..+..+.+|- +...+.++....++ +..+. .+ .++ +++||+++..+. -...+..+.
T Consensus 99 treLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeq---f~~l~-~n--pDi------i~ATpgr~~h~~vem~l~l~sve 166 (529)
T KOG0337|consen 99 TRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQ---FILLN-EN--PDI------IIATPGRLLHLGVEMTLTLSSVE 166 (529)
T ss_pred cHHHHHHHHHHHHHhccccchhhhhhcccchHHHH---HHHhc-cC--CCE------EEecCceeeeeehheecccccee
Confidence 99999999999988653 33323333323222 22222 22 333 455666555442 234567789
Q ss_pred EEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCC---CCcceEEE
Q 011387 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEV 236 (487)
Q Consensus 161 ~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~~~~~v 236 (487)
++|+|||+.+.++|+ . .++..+....| +.+.++||||.+..... ....++.+|..++-... .+.+....
T Consensus 167 yVVfdEadrlfemgf--q---eql~e~l~rl~~~~QTllfSatlp~~lv~--fakaGl~~p~lVRldvetkise~lk~~f 239 (529)
T KOG0337|consen 167 YVVFDEADRLFEMGF--Q---EQLHEILSRLPESRQTLLFSATLPRDLVD--FAKAGLVPPVLVRLDVETKISELLKVRF 239 (529)
T ss_pred eeeehhhhHHHhhhh--H---HHHHHHHHhCCCcceEEEEeccCchhhHH--HHHccCCCCceEEeehhhhcchhhhhhe
Confidence 999999999999884 3 56677777777 67999999999988777 56668888877662211 11111111
Q ss_pred EeeCchhhHHHHHHHHHHhC-CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 011387 237 RYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (487)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT 315 (487)
.. ....++...|+.++... ..++++||+.|+.+++.+...|...|+.+..+.|.|++..|..-..+|..++..++|.|
T Consensus 240 ~~-~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvT 318 (529)
T KOG0337|consen 240 FR-VRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVT 318 (529)
T ss_pred ee-eccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEe
Confidence 11 11246777787777765 44679999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHh
Q 011387 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (487)
Q Consensus 316 ~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~ 376 (487)
+++++|+|+|-.+.||+||+|.+...|+||+||+.|.|+.|.++.++.+.|..++-.+..-
T Consensus 319 dvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lf 379 (529)
T KOG0337|consen 319 DVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLF 379 (529)
T ss_pred hhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999988877665443
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=5.5e-37 Score=341.32 Aligned_cols=288 Identities=23% Similarity=0.277 Sum_probs=207.3
Q ss_pred EEcCCCchhhHHHHHhHhcC----------------CCeEEEeCcHHHHHHHHHHHHHH----------------cCCce
Q 011387 58 CLMPTGGGKSMCYQIPALAK----------------PGIVLVVSPLIALMENQVIGLKE----------------KGIAG 105 (487)
Q Consensus 58 v~apTGsGKTl~~~lp~l~~----------------~~~~lvl~P~~~L~~q~~~~l~~----------------~~~~~ 105 (487)
|+||||||||++|.+|++.+ +.++|||+|+++|+.|+.+.|+. .++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999998632 35799999999999999998863 35677
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--h-hhhcCCccEEEEeccccccc--cCCCChHH
Q 011387 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--K-IHSRGLLNLVAIDEAHCISS--WGHDFRPS 180 (487)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~-~~~~~~l~~lViDEah~~~~--~g~~f~~~ 180 (487)
...+++....++..... . ..+|+++|||.+ ..+. + ...++++++|||||+|.+.+ +|..+...
T Consensus 81 ~vrtGDt~~~eR~rll~----~--ppdILVTTPEsL------~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~ 148 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTR----N--PPDILITTPESL------YLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALS 148 (1490)
T ss_pred EEEECCCCHHHHHHHhc----C--CCCEEEecHHHH------HHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHH
Confidence 77888877766543221 1 256777766644 2221 1 12467799999999999975 57666655
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCC-CC-cceEEEEeeCch----------------
Q 011387 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RP-NLFYEVRYKDLL---------------- 242 (487)
Q Consensus 181 ~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~-~~~~~v~~~~~~---------------- 242 (487)
+.+|..+.. .+.|+|++|||..+. +++.++++...+..+..... ++ ++.+.+...+..
T Consensus 149 LeRL~~l~~--~~~QrIgLSATI~n~--eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~ 224 (1490)
T PRK09751 149 LERLDALLH--TSAQRIGLSATVRSA--SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAG 224 (1490)
T ss_pred HHHHHHhCC--CCCeEEEEEeeCCCH--HHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchh
Confidence 555544422 368999999999874 56788887655543332222 21 222221111100
Q ss_pred --hhH----HHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCC---------------------------------C
Q 011387 243 --DDA----YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---------------------------------I 283 (487)
Q Consensus 243 --~~~----~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g---------------------------------~ 283 (487)
... ...+...+. .+.++||||||++.|+.++..|++.. .
T Consensus 225 r~~~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1490)
T PRK09751 225 REGSIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVF 302 (1490)
T ss_pred hhhhhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccce
Confidence 000 011222222 45789999999999999999997641 1
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCC-CCCceEEEEE
Q 011387 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYY 362 (487)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~-g~~g~~i~~~ 362 (487)
.+..|||+|++++|..+++.|++|++++||||+++++|||++++++||+++.|.|..+|+||+||+||. |..+.++++.
T Consensus 303 ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 303 IARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred eeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEe
Confidence 257899999999999999999999999999999999999999999999999999999999999999995 4455666444
Q ss_pred e
Q 011387 363 G 363 (487)
Q Consensus 363 ~ 363 (487)
.
T Consensus 383 ~ 383 (1490)
T PRK09751 383 R 383 (1490)
T ss_pred C
Confidence 3
No 56
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.5e-36 Score=320.81 Aligned_cols=318 Identities=15% Similarity=0.123 Sum_probs=213.4
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcCC-CEEEEcCCCchhhHHHHHhHhcC-----CC-eEEEeCcHHHHHHHHHHH
Q 011387 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAK-----PG-IVLVVSPLIALMENQVIG 97 (487)
Q Consensus 25 ~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~-dvlv~apTGsGKTl~~~lp~l~~-----~~-~~lvl~P~~~L~~q~~~~ 97 (487)
+....+++..||+ |+|+|+++++.+++|+ ++++.+|||||||.++.++.+.. .. +.++++|+++|+.|..+.
T Consensus 3 ~f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 3 KFDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred hHHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHH
Confidence 3455666767998 9999999999999998 57778999999999655433321 23 455577999999999988
Q ss_pred HHHcC---------------------------CceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhH---
Q 011387 98 LKEKG---------------------------IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM--- 147 (487)
Q Consensus 98 l~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~--- 147 (487)
+.+++ +.+..+.++...... +..+. ....|+++|++.+......
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q---~~~l~---~~p~IIVgT~D~i~sr~L~~gY 155 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDE---WMLDP---HRPAVIVGTVDMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHH---HHhcC---CCCcEEEECHHHHcCCcccccc
Confidence 87743 334555555544332 22222 2367888887666542211
Q ss_pred ---HHH--HhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC---CCcEEEEecCCChHHHHHHHHHhcCCC
Q 011387 148 ---SKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQN 219 (487)
Q Consensus 148 ---~~l--~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i~~~l~~~~ 219 (487)
..+ ...-.+++++++|+|||| ++.| |......|.......+ +.++++||||++.++...... + +.+
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~g--F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~-~-~~~ 229 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPA--FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTL-L-SAE 229 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccc--cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHH-H-ccC
Confidence 000 011125678899999999 4555 7766665544321122 268999999998776543222 2 222
Q ss_pred CeEEecC---CCCCcceEEEEeeCchhhHHHH----HHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCC
Q 011387 220 PLVLKSS---FNRPNLFYEVRYKDLLDDAYAD----LCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (487)
Q Consensus 220 ~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~----l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l 292 (487)
+..+... .....+.. +.... .+.++.. +...+. ..++++||||||++.++.+++.|.+.++ ..+||+|
T Consensus 230 p~~i~V~~~~l~a~ki~q-~v~v~-~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m 304 (844)
T TIGR02621 230 DYKHPVLKKRLAAKKIVK-LVPPS-DEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTL 304 (844)
T ss_pred CceeecccccccccceEE-EEecC-hHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCC
Confidence 3222111 11112221 11111 1223323 222332 3567899999999999999999999886 8999999
Q ss_pred CHHHHH-----HHHHHHhc----CC-------CcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCc
Q 011387 293 NDKARS-----SVLDDWIS----SR-------KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (487)
Q Consensus 293 ~~~~R~-----~~~~~f~~----g~-------~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g 356 (487)
++.+|. .+++.|++ |+ ..|||||+++++|||++. ++||++..| .++|+||+||+||.|+.|
T Consensus 305 ~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~ 381 (844)
T TIGR02621 305 RGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQ 381 (844)
T ss_pred CHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCC
Confidence 999999 78999987 44 689999999999999986 888887766 799999999999999864
Q ss_pred eE-EEEEe
Q 011387 357 KS-LLYYG 363 (487)
Q Consensus 357 ~~-i~~~~ 363 (487)
.+ +.++.
T Consensus 382 ~~~i~vv~ 389 (844)
T TIGR02621 382 ACQIAVVH 389 (844)
T ss_pred CceEEEEe
Confidence 43 55543
No 57
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2e-36 Score=336.05 Aligned_cols=306 Identities=20% Similarity=0.259 Sum_probs=216.9
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHh---cCCCeEEEeCcHHHHHHHHHHHHHHc
Q 011387 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEK 101 (487)
Q Consensus 25 ~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l---~~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (487)
+..+.+++.+|+ .|+++|+.+++.++.|+|++++||||+|||..++++++ ..+.+++||+||++|+.|+.+.++.+
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 344566677788 79999999999999999999999999999975444332 23788999999999999999999986
Q ss_pred CC----ceEEecCCCC--HHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCC
Q 011387 102 GI----AGEFLSSTQT--MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (487)
Q Consensus 102 ~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~ 175 (487)
+. ....+.++.. ..+.......+..+. .+++ |+||+++...........++++||||||++++|++
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~--~~Il------V~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k 218 (1176)
T PRK09401 147 GEKVGCGVKILYYHSSLKKKEKEEFLERLKEGD--FDIL------VTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSK 218 (1176)
T ss_pred hhhcCceEEEEEccCCcchhHHHHHHHHHhcCC--CCEE------EECHHHHHHHHHhccccccCEEEEEChHHhhhccc
Confidence 43 3333333322 333344444454443 4554 55555555554445556699999999999998664
Q ss_pred C---------Ch------------------HHHHHHHHHHHhCC-----CCcEEEEecCCChH-HHHHHHHHhcCCCCeE
Q 011387 176 D---------FR------------------PSYRKLSSLRNYLP-----DVPILALTATAAPK-VQKDVMESLCLQNPLV 222 (487)
Q Consensus 176 ~---------f~------------------~~~~~l~~l~~~~~-----~~~~i~lSAT~~~~-~~~~i~~~l~~~~~~~ 222 (487)
+ |. +.|..+..+...+. +.+++++|||.++. ....+...+. ...+
T Consensus 219 ~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll--~~~v 296 (1176)
T PRK09401 219 NIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELL--GFEV 296 (1176)
T ss_pred chhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccc--eEEe
Confidence 3 42 22333333433322 57899999999875 3322222111 0001
Q ss_pred EecCCCCCcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccch---HHHHHHHHHhCCCceEEecCCCCHHHHHH
Q 011387 223 LKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLNDKARSS 299 (487)
Q Consensus 223 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~---~~~l~~~L~~~g~~~~~~h~~l~~~~R~~ 299 (487)
-.......|+...+.... ++...+.++++..+ ..+||||++++. ++.+++.|+..|+++..+||+| .+
T Consensus 297 ~~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~ 367 (1176)
T PRK09401 297 GSPVFYLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ER 367 (1176)
T ss_pred cCcccccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HH
Confidence 111223345544333332 45566777776554 579999999888 9999999999999999999999 23
Q ss_pred HHHHHhcCCCcEEEE----cCccccccccCC-CcEEEEeCCCC------CHHHHHHHHhccC
Q 011387 300 VLDDWISSRKQVVVA----TVAFGMGIDRKD-VRLVCHFNIPK------SMEAFYQESGRAG 350 (487)
Q Consensus 300 ~~~~f~~g~~~vLVa----T~~~~~GiDip~-v~~VI~~~~p~------s~~~y~Qr~GRag 350 (487)
.+++|++|+++|||| |++++||||+|+ |++|||||+|+ ..+.|.||+||+-
T Consensus 368 ~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 368 KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 359999999999999 689999999999 89999999998 6788999999983
No 58
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=4.1e-36 Score=301.60 Aligned_cols=301 Identities=19% Similarity=0.140 Sum_probs=191.8
Q ss_pred CEEEEcCCCchhhHHHHHhHhc-----CCCeEEEeCcHHHHHHHHHHHHHHc-CCceEEecCCCCHHHH---------HH
Q 011387 55 DCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEK-GIAGEFLSSTQTMQVK---------TK 119 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~lp~l~-----~~~~~lvl~P~~~L~~q~~~~l~~~-~~~~~~~~~~~~~~~~---------~~ 119 (487)
++++.||||||||++|++|++. ...++++++|+++|+.|+.++++.. +.....+++....... ..
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 5899999999999999999883 3679999999999999999999985 6545444443321100 00
Q ss_pred HHHHHhcCCCcccEEEeCcccccChhhHHHH-Hh-------hhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhC
Q 011387 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KK-------IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191 (487)
Q Consensus 120 ~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l-~~-------~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~ 191 (487)
....... ..+.+...|.+++||+.+... .. ....-..+++|+||||.+.+++..+ ....+..+. .
T Consensus 81 ~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~--l~~~l~~l~--~ 153 (358)
T TIGR01587 81 LFPLYIH---SNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL--ILAVLEVLK--D 153 (358)
T ss_pred HHHHHhh---chhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH--HHHHHHHHH--H
Confidence 1111100 111223334455555433221 11 0011123789999999998865322 222222222 2
Q ss_pred CCCcEEEEecCCChHHHHHHHHHhcCC-CCeEEecCCCCCcceEEEEe-eCchhhHHHHHHHHHHh-CCCceEEEEeccc
Q 011387 192 PDVPILALTATAAPKVQKDVMESLCLQ-NPLVLKSSFNRPNLFYEVRY-KDLLDDAYADLCSVLKA-NGDTCAIVYCLER 268 (487)
Q Consensus 192 ~~~~~i~lSAT~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~l~~-~~~~~~iIf~~s~ 268 (487)
.+.|+++||||++....+ +....... .+........+....+.+.. ......+...+..+++. ..++++||||+|+
T Consensus 154 ~~~~~i~~SATlp~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~ 232 (358)
T TIGR01587 154 NDVPILLMSATLPKFLKE-YAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTV 232 (358)
T ss_pred cCCCEEEEecCchHHHHH-HHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCH
Confidence 478999999999865433 23222211 11111111000001111111 11111233334444433 2467899999999
Q ss_pred chHHHHHHHHHhCCC--ceEEecCCCCHHHHHH----HHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHH
Q 011387 269 TTCDELSAYLSAGGI--SCAAYHAGLNDKARSS----VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAF 342 (487)
Q Consensus 269 ~~~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~----~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y 342 (487)
+.++.+++.|.+.+. .+..+||++++.+|.+ +++.|.+|+..|||||+++++|||++ +++||++..| .++|
T Consensus 233 ~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~ 309 (358)
T TIGR01587 233 DRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSL 309 (358)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHH
Confidence 999999999998776 4899999999999976 48899999999999999999999995 8899988766 8899
Q ss_pred HHHHhccCCCCCCc----eEEEEEecch
Q 011387 343 YQESGRAGRDQLPS----KSLLYYGMDD 366 (487)
Q Consensus 343 ~Qr~GRagR~g~~g----~~i~~~~~~d 366 (487)
+||+||+||.|+.+ ..++|....+
T Consensus 310 iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 310 IQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 99999999988543 5666655443
No 59
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.6e-35 Score=294.86 Aligned_cols=300 Identities=19% Similarity=0.205 Sum_probs=198.4
Q ss_pred HHHHHHHHHHcCCC--EEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHc--------CCceEEecCC
Q 011387 42 KQLDAIQAVLSGRD--CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK--------GIAGEFLSST 111 (487)
Q Consensus 42 ~Q~~~i~~~l~~~d--vlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~--------~~~~~~~~~~ 111 (487)
+|.++++++.++++ +++.||||+|||.+|++|++....++++++|+++|++|+.++++++ +.....+++.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 80 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKA 80 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCC
Confidence 59999999998874 7889999999999999999988889999999999999999998874 2223333333
Q ss_pred CCHHHHHHH--HHHHhcCCCccc-----EEEeCcc-cccChhhHHHHHhh----------hhcCCccEEEEecccccccc
Q 011387 112 QTMQVKTKI--YEDLDSGKPSLR-----LLYVTPE-LTATPGFMSKLKKI----------HSRGLLNLVAIDEAHCISSW 173 (487)
Q Consensus 112 ~~~~~~~~~--~~~~~~~~~~~~-----il~~tpe-~v~t~~~~~~l~~~----------~~~~~l~~lViDEah~~~~~ 173 (487)
...+.+... ......+..... +--.+|+ ++++|..+..+... .....++++|+||+|.+..|
T Consensus 81 ~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~ 160 (357)
T TIGR03158 81 TLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAK 160 (357)
T ss_pred chHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcc
Confidence 222111110 000001100000 0011233 33334444433221 11356899999999999887
Q ss_pred CCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCC------------C------C---Cc
Q 011387 174 GHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF------------N------R---PN 231 (487)
Q Consensus 174 g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~------------~------~---~~ 231 (487)
+..+...+.....+.... ...+++++|||+++.+...+.....+..+.....+. . + +.
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (357)
T TIGR03158 161 QLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPP 240 (357)
T ss_pred cchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccc
Confidence 765555443333333322 257999999999998877766653334343322221 0 1 24
Q ss_pred ceEEEEeeC-chhhHHHHHHHH----HHhCCCceEEEEecccchHHHHHHHHHhCC--CceEEecCCCCHHHHHHHHHHH
Q 011387 232 LFYEVRYKD-LLDDAYADLCSV----LKANGDTCAIVYCLERTTCDELSAYLSAGG--ISCAAYHAGLNDKARSSVLDDW 304 (487)
Q Consensus 232 ~~~~v~~~~-~~~~~~~~l~~~----l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g--~~~~~~h~~l~~~~R~~~~~~f 304 (487)
+.+.+.... .....+..+.+. ++..++.++||||+|++.++.+++.|++.| ..+..+||.+++.+|.+.
T Consensus 241 i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~---- 316 (357)
T TIGR03158 241 VELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA---- 316 (357)
T ss_pred eEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh----
Confidence 444444321 112223333333 333467789999999999999999999865 578889999999998754
Q ss_pred hcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccC
Q 011387 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 350 (487)
Q Consensus 305 ~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRag 350 (487)
++.+|||||+++++|||++++ +|| ++ |.+.++|+||+||+|
T Consensus 317 --~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 --MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred --ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 478999999999999999987 666 45 899999999999997
No 60
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.5e-35 Score=285.10 Aligned_cols=316 Identities=23% Similarity=0.286 Sum_probs=234.4
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC----CCeEEEeCcHHHHHHHHHHHHHH-cCCc---eEE
Q 011387 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQVIGLKE-KGIA---GEF 107 (487)
Q Consensus 36 ~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~----~~~~lvl~P~~~L~~q~~~~l~~-~~~~---~~~ 107 (487)
.-++|.+|..+....+.+ ++++++|||-|||.++.+-+... ++++|+++||+-|+.|+.+.+.+ .|++ ...
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAA 91 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheee
Confidence 347899999999888766 89999999999999988766532 56899999999999999999988 5663 457
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH-HhhhhcCCccEEEEeccccccccCCCChHHHHHHHH
Q 011387 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (487)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l-~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~ 186 (487)
+++.....++...|.. .++++.||.++.+ ++ ....+...+.++|+||||+-.. .-+|..+..
T Consensus 92 ltGev~p~~R~~~w~~-------~kVfvaTPQvveN-----Dl~~Grid~~dv~~lifDEAHRAvG-----nyAYv~Va~ 154 (542)
T COG1111 92 LTGEVRPEEREELWAK-------KKVFVATPQVVEN-----DLKAGRIDLDDVSLLIFDEAHRAVG-----NYAYVFVAK 154 (542)
T ss_pred ecCCCChHHHHHHHhh-------CCEEEeccHHHHh-----HHhcCccChHHceEEEechhhhccC-----cchHHHHHH
Confidence 8888888888777763 6788888877754 33 3455667789999999999754 123444443
Q ss_pred -HHHhCCCCcEEEEecCCChH--HHHHHHHHhcCCCCeEEecCCC---CCcc---eEEEEeeCc----------------
Q 011387 187 -LRNYLPDVPILALTATAAPK--VQKDVMESLCLQNPLVLKSSFN---RPNL---FYEVRYKDL---------------- 241 (487)
Q Consensus 187 -l~~~~~~~~~i~lSAT~~~~--~~~~i~~~l~~~~~~~~~~~~~---~~~~---~~~v~~~~~---------------- 241 (487)
+...-.+..+++|||||..+ -...+++.|++..-.+-. ..+ ++.+ ..+....+.
T Consensus 155 ~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrT-E~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~ 233 (542)
T COG1111 155 EYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRT-EEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALK 233 (542)
T ss_pred HHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEec-CCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHH
Confidence 33333356799999999654 456677777765432211 000 0000 000000000
Q ss_pred -------------------------------------hh-----------------------------------------
Q 011387 242 -------------------------------------LD----------------------------------------- 243 (487)
Q Consensus 242 -------------------------------------~~----------------------------------------- 243 (487)
..
T Consensus 234 ~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~ 313 (542)
T COG1111 234 PRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEA 313 (542)
T ss_pred HHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 00
Q ss_pred ----------------------------------hHHHHHHHHH----HhCCCceEEEEecccchHHHHHHHHHhCCCce
Q 011387 244 ----------------------------------DAYADLCSVL----KANGDTCAIVYCLERTTCDELSAYLSAGGISC 285 (487)
Q Consensus 244 ----------------------------------~~~~~l~~~l----~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~ 285 (487)
.|+..+.+++ +..++.++|||++.|++++.+.+.|.+.|+.+
T Consensus 314 ~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~ 393 (542)
T COG1111 314 TKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKA 393 (542)
T ss_pred cccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcc
Confidence 1222233333 33467899999999999999999999998877
Q ss_pred E--E-------ecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCc
Q 011387 286 A--A-------YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (487)
Q Consensus 286 ~--~-------~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g 356 (487)
. + ...||+++++.+++++|++|+++|||||++.++|+|+|+++.||.|+...|.--++||.||+||. ++|
T Consensus 394 ~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~G 472 (542)
T COG1111 394 RVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKG 472 (542)
T ss_pred eeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCC
Confidence 4 2 23579999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred eEEEEEecchHHHHH
Q 011387 357 KSLLYYGMDDRRRME 371 (487)
Q Consensus 357 ~~i~~~~~~d~~~~~ 371 (487)
.+++++.....+...
T Consensus 473 rv~vLvt~gtrdeay 487 (542)
T COG1111 473 RVVVLVTEGTRDEAY 487 (542)
T ss_pred eEEEEEecCchHHHH
Confidence 999999888554433
No 61
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=4.3e-36 Score=293.98 Aligned_cols=333 Identities=23% Similarity=0.315 Sum_probs=247.0
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEcCCCchhhHHHHHhHh----cCCCeEEEeCcHHHH
Q 011387 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIAL 90 (487)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~-~l~~~dvlv~apTGsGKTl~~~lp~l----~~~~~~lvl~P~~~L 90 (487)
+-..+.+++++.+.|+. -|++.+.|+|..++.+ ++.|+|.+|+.+|+||||++..+.-+ ..+++.++++|+.+|
T Consensus 195 ~vdeLdipe~fk~~lk~-~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVAL 273 (830)
T COG1202 195 PVDELDIPEKFKRMLKR-EGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVAL 273 (830)
T ss_pred cccccCCcHHHHHHHHh-cCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHh
Confidence 34567888999999998 5999999999999987 67999999999999999999876544 338999999999999
Q ss_pred HHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh-hhhcCCccEEEEe
Q 011387 91 MENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAID 165 (487)
Q Consensus 91 ~~q~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~-~~~~~~l~~lViD 165 (487)
++|.++.++. +|+....-.+..-....... -.....++++|+++|.|- ++.+.+ -...+++..+|||
T Consensus 274 ANQKy~dF~~rYs~LglkvairVG~srIk~~~~p--v~~~t~~dADIIVGTYEG------iD~lLRtg~~lgdiGtVVID 345 (830)
T COG1202 274 ANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEP--VVVDTSPDADIIVGTYEG------IDYLLRTGKDLGDIGTVVID 345 (830)
T ss_pred hcchHHHHHHHhhcccceEEEEechhhhcccCCc--cccCCCCCCcEEEeechh------HHHHHHcCCcccccceEEee
Confidence 9999998876 46555433222111111000 011233457776666553 333433 3667889999999
Q ss_pred ccccccc--cCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchh
Q 011387 166 EAHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD 243 (487)
Q Consensus 166 Eah~~~~--~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 243 (487)
|+|.+-+ .|+... --+++++..+|+.|++.+|||..+. ..+.+.++..- +.+. -..-.+..++.......
T Consensus 346 EiHtL~deERG~RLd---GLI~RLr~l~~~AQ~i~LSATVgNp--~elA~~l~a~l-V~y~--~RPVplErHlvf~~~e~ 417 (830)
T COG1202 346 EIHTLEDEERGPRLD---GLIGRLRYLFPGAQFIYLSATVGNP--EELAKKLGAKL-VLYD--ERPVPLERHLVFARNES 417 (830)
T ss_pred eeeeccchhcccchh---hHHHHHHHhCCCCeEEEEEeecCCh--HHHHHHhCCee-Eeec--CCCCChhHeeeeecCch
Confidence 9999976 565433 3467788889999999999999776 34577776542 1111 11123333444444345
Q ss_pred hHHHHHHHHHHhC--------CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 011387 244 DAYADLCSVLKAN--------GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (487)
Q Consensus 244 ~~~~~l~~~l~~~--------~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT 315 (487)
++++.+..+.+.. -.+++|||++|+..|+.++..|...|+++.+||+||+..+|..+...|.++++.++|+|
T Consensus 418 eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTT 497 (830)
T COG1202 418 EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTT 497 (830)
T ss_pred HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeeh
Confidence 6777776666532 24679999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCcEEE---EeCCCC-CHHHHHHHHhccCCCC--CCceEEEEEecc
Q 011387 316 VAFGMGIDRKDVRLVC---HFNIPK-SMEAFYQESGRAGRDQ--LPSKSLLYYGMD 365 (487)
Q Consensus 316 ~~~~~GiDip~v~~VI---~~~~p~-s~~~y~Qr~GRagR~g--~~g~~i~~~~~~ 365 (487)
-+++.|+|+|.-.+|+ -++.-| |+.+|.|+.|||||.+ ..|.++++..+.
T Consensus 498 AAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 498 AALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999999655443 233333 8999999999999976 457777776543
No 62
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.5e-35 Score=308.03 Aligned_cols=300 Identities=18% Similarity=0.249 Sum_probs=204.7
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCchhhHH---------HHHhHhc---------CCCeEEEeCcHHHHHHHHHHHHHHc--
Q 011387 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMC---------YQIPALA---------KPGIVLVVSPLIALMENQVIGLKEK-- 101 (487)
Q Consensus 42 ~Q~~~i~~~l~~~dvlv~apTGsGKTl~---------~~lp~l~---------~~~~~lvl~P~~~L~~q~~~~l~~~-- 101 (487)
.|+++++.+++|+++++.|+||+|||.+ |++|.+. ..+.++|++|+++|+.|...++.+.
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 7889999999999999999999999987 3333322 2458999999999999988888652
Q ss_pred -----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCC
Q 011387 102 -----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176 (487)
Q Consensus 102 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~ 176 (487)
+.+.....++..... . .... ...+++++|+... ...+..++++||||||..+..+.
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~~----~-~t~~--k~~~Ilv~T~~L~-----------l~~L~~v~~VVIDEaHEr~~~~D- 308 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDEL----I-NTNP--KPYGLVFSTHKLT-----------LNKLFDYGTVIIDEVHEHDQIGD- 308 (675)
T ss_pred ccccCCceEEEEECCcchHH----h-hccc--CCCCEEEEeCccc-----------ccccccCCEEEccccccCccchh-
Confidence 222334444433110 0 0010 1245666654321 12345789999999999987662
Q ss_pred ChHHHHHHHHHHHhCCC-CcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCC-CCcceEEEEeeC--------chhhHH
Q 011387 177 FRPSYRKLSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKD--------LLDDAY 246 (487)
Q Consensus 177 f~~~~~~l~~l~~~~~~-~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~~v~~~~--------~~~~~~ 246 (487)
..+..++...+. .++++||||++.++.. +.+.+ .++..+..+-. ...+........ ......
T Consensus 309 -----llL~llk~~~~~~rq~ILmSATl~~dv~~-l~~~~--~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k 380 (675)
T PHA02653 309 -----IIIAVARKHIDKIRSLFLMTATLEDDRDR-IKEFF--PNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEK 380 (675)
T ss_pred -----HHHHHHHHhhhhcCEEEEEccCCcHhHHH-HHHHh--cCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHH
Confidence 112222222222 4799999999877643 44443 34444332211 112221111110 001111
Q ss_pred HHHHHHHHh---CCCceEEEEecccchHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHH-hcCCCcEEEEcCcccc
Q 011387 247 ADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDW-ISSRKQVVVATVAFGM 320 (487)
Q Consensus 247 ~~l~~~l~~---~~~~~~iIf~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f-~~g~~~vLVaT~~~~~ 320 (487)
..+...+.. ..++++|||++++++++.+++.|.+. ++.+..+||+|++. ++.+++| .+|+.+|||||+++++
T Consensus 381 ~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAER 458 (675)
T PHA02653 381 KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLES 458 (675)
T ss_pred HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhc
Confidence 222333322 23568999999999999999999987 68999999999975 4667777 6899999999999999
Q ss_pred ccccCCCcEEEEeC---CCC---------CHHHHHHHHhccCCCCCCceEEEEEecchHHHHH
Q 011387 321 GIDRKDVRLVCHFN---IPK---------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371 (487)
Q Consensus 321 GiDip~v~~VI~~~---~p~---------s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~ 371 (487)
|||+|+|++||++| .|. |.++|.||+|||||. ++|.|+.+|+.++...+.
T Consensus 459 GIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ 520 (675)
T PHA02653 459 SVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIK 520 (675)
T ss_pred cccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHH
Confidence 99999999999999 665 889999999999999 799999999988764433
No 63
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.5e-34 Score=299.57 Aligned_cols=325 Identities=21% Similarity=0.199 Sum_probs=232.8
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC---CCeEEEeCcHHHHHHHHHHHHHH---
Q 011387 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE--- 100 (487)
Q Consensus 27 ~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q~~~~l~~--- 100 (487)
..+..+.+|+. |+++|..+++.++.|+ ++.|.||+|||++|.+|++.. +..++|++|+++|+.|..+.+..
T Consensus 93 rEa~~R~lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 93 REASGRVLGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred HHHHHHHhCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 34455667874 8899999999999999 999999999999999999865 78899999999999999988776
Q ss_pred -cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH----------------------hhhhcC
Q 011387 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK----------------------KIHSRG 157 (487)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~----------------------~~~~~~ 157 (487)
+|+.+..+.++.....+...+ ..+|+|+|..-+.-.-..+.+. ...-.+
T Consensus 170 ~lGlsv~~i~gg~~~~~r~~~y--------~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 241 (656)
T PRK12898 170 ALGLTVGCVVEDQSPDERRAAY--------GADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR 241 (656)
T ss_pred hcCCEEEEEeCCCCHHHHHHHc--------CCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc
Confidence 588998888876654433222 2689999876443211111110 011134
Q ss_pred CccEEEEecccccc-----------cc--CC--------------------CCh--------------------------
Q 011387 158 LLNLVAIDEAHCIS-----------SW--GH--------------------DFR-------------------------- 178 (487)
Q Consensus 158 ~l~~lViDEah~~~-----------~~--g~--------------------~f~-------------------------- 178 (487)
.+.+.||||+|.++ .- .. +|.
T Consensus 242 ~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~ 321 (656)
T PRK12898 242 GLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLP 321 (656)
T ss_pred ccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcch
Confidence 58899999999873 00 00 111
Q ss_pred HHHH----H---H-HHHHHh---------------------------------------------CC-------------
Q 011387 179 PSYR----K---L-SSLRNY---------------------------------------------LP------------- 192 (487)
Q Consensus 179 ~~~~----~---l-~~l~~~---------------------------------------------~~------------- 192 (487)
+.|. . + ..+... .+
T Consensus 322 ~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~ 401 (656)
T PRK12898 322 PAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITY 401 (656)
T ss_pred hhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehH
Confidence 0000 0 0 000000 00
Q ss_pred ------CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceE--EEEeeCchhhHHHHHHHHHHhC--CCceEE
Q 011387 193 ------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKAN--GDTCAI 262 (487)
Q Consensus 193 ------~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~l~~~--~~~~~i 262 (487)
-..+.+||||+... ..++.+..++. + +..+.++|+... .........+++..|.+.++.. .+.++|
T Consensus 402 q~~Fr~Y~kl~GmTGTa~~~-~~El~~~y~l~-v--v~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvL 477 (656)
T PRK12898 402 QRFFRRYLRLAGMTGTAREV-AGELWSVYGLP-V--VRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVL 477 (656)
T ss_pred HHHHHhhHHHhcccCcChHH-HHHHHHHHCCC-e--EEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 01367899999864 45666666664 2 333445554422 1111122356788888888663 367899
Q ss_pred EEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccC---CCc-----EEEEeC
Q 011387 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHFN 334 (487)
Q Consensus 263 If~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip---~v~-----~VI~~~ 334 (487)
|||+|++.++.+++.|.+.|+++..+||++++ |+..+..+..+...|+|||++++||+|++ +|+ +||+|+
T Consensus 478 Ift~t~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d 555 (656)
T PRK12898 478 VGTRSVAASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTE 555 (656)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcC
Confidence 99999999999999999999999999998654 44555556666678999999999999999 676 999999
Q ss_pred CCCCHHHHHHHHhccCCCCCCceEEEEEecchHH
Q 011387 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (487)
Q Consensus 335 ~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~ 368 (487)
+|.|...|.||+||+||.|.+|.+++|++.+|.-
T Consensus 556 ~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 556 RHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred CCCCHHHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 9999999999999999999999999999987643
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.8e-34 Score=300.06 Aligned_cols=297 Identities=16% Similarity=0.109 Sum_probs=202.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhH---hcC-CCeEEEeCcHHHHHHHHHHHHHHcCCc----eEEe
Q 011387 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAK-PGIVLVVSPLIALMENQVIGLKEKGIA----GEFL 108 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~---l~~-~~~~lvl~P~~~L~~q~~~~l~~~~~~----~~~~ 108 (487)
-.||++|.++++.++.+++.++.+|||+|||+++...+ +.. .++++||+|+++|+.|+.+++++++.. ...+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 47999999999999999999999999999999765432 233 348999999999999999999986421 1111
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHH
Q 011387 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (487)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~ 188 (487)
.++... .....++++|+..+. ...+ .....++++|+||||++.. ..+..+.
T Consensus 193 ~~g~~~-------------~~~~~I~VaT~qsl~------~~~~-~~~~~~~~iIvDEaH~~~~---------~~~~~il 243 (501)
T PHA02558 193 YSGTAK-------------DTDAPIVVSTWQSAV------KQPK-EWFDQFGMVIVDECHLFTG---------KSLTSII 243 (501)
T ss_pred ecCccc-------------CCCCCEEEeeHHHHh------hchh-hhccccCEEEEEchhcccc---------hhHHHHH
Confidence 111110 012456555554332 2211 1245789999999999875 2234445
Q ss_pred HhCC-CCcEEEEecCCChHHHHH--HHHHhcCCCCeEEecCC----C---CCcceEEEEe---e----------C-----
Q 011387 189 NYLP-DVPILALTATAAPKVQKD--VMESLCLQNPLVLKSSF----N---RPNLFYEVRY---K----------D----- 240 (487)
Q Consensus 189 ~~~~-~~~~i~lSAT~~~~~~~~--i~~~l~~~~~~~~~~~~----~---~~~~~~~v~~---~----------~----- 240 (487)
..++ ..++++||||+....... +...++ +.....+. . .....+.... . .
T Consensus 244 ~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG---~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 320 (501)
T PHA02558 244 TKLDNCKFKFGLTGSLRDGKANILQYVGLFG---DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEI 320 (501)
T ss_pred HhhhccceEEEEeccCCCccccHHHHHHhhC---CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHH
Confidence 5554 456899999997543221 111111 11111000 0 0000000000 0 0
Q ss_pred ----chhhHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011387 241 ----LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (487)
Q Consensus 241 ----~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVa 314 (487)
..+.+...+.+.+.. ..+.+++|||.++++++.+++.|++.|.++..+||+++.++|..+++.|++|+..||||
T Consensus 321 ~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLva 400 (501)
T PHA02558 321 KYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVA 400 (501)
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 001111222222221 24567899999999999999999999999999999999999999999999999999999
Q ss_pred c-CccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecc
Q 011387 315 T-VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (487)
Q Consensus 315 T-~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~ 365 (487)
| +.+++|+|+|++++||++++++|...|+||+||++|.+..+...++|+--
T Consensus 401 T~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~v 452 (501)
T PHA02558 401 SYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDII 452 (501)
T ss_pred EcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEee
Confidence 8 89999999999999999999999999999999999987655444444433
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.9e-34 Score=299.71 Aligned_cols=325 Identities=21% Similarity=0.202 Sum_probs=238.6
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 011387 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (487)
Q Consensus 26 ~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (487)
+..+..+.+|+ .|++.|..+...+++|+ ++.|.||+|||+++.+|++. .+..+.|++|++.|+.|..+.+..
T Consensus 67 vrea~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 67 VREAAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred HHHHHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 34555667787 69999999999888887 99999999999999999974 488999999999999999988776
Q ss_pred --cCCceEEecCCCC-HHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH---hhhhcCCccEEEEeccccccc--
Q 011387 101 --KGIAGEFLSSTQT-MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS-- 172 (487)
Q Consensus 101 --~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~---~~~~~~~l~~lViDEah~~~~-- 172 (487)
+|+.+..+.++.. ...+...+ ..+|+|+||.-++-.-....+. .......+.++||||||.++=
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~~y--------~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDe 215 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKAIY--------EADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDE 215 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHHhc--------CCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceecc
Confidence 5899998888777 44443221 2678888877553221122221 112346689999999999840
Q ss_pred ---------c--------------------CCCC-----------------------------hHHHHHH-----HHHHH
Q 011387 173 ---------W--------------------GHDF-----------------------------RPSYRKL-----SSLRN 189 (487)
Q Consensus 173 ---------~--------------------g~~f-----------------------------~~~~~~l-----~~l~~ 189 (487)
. +.+| .+....+ ..++.
T Consensus 216 a~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A 295 (790)
T PRK09200 216 AQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRA 295 (790)
T ss_pred CCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHH
Confidence 0 0011 0111111 11111
Q ss_pred hC------------------------------------------------C----------------CCcEEEEecCCCh
Q 011387 190 YL------------------------------------------------P----------------DVPILALTATAAP 205 (487)
Q Consensus 190 ~~------------------------------------------------~----------------~~~~i~lSAT~~~ 205 (487)
.+ + -..+.+||+|+..
T Consensus 296 ~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t 375 (790)
T PRK09200 296 HVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKT 375 (790)
T ss_pred HHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChH
Confidence 10 0 0135678888744
Q ss_pred HHHHHHHHHhcCCCCeEEecCCCCCcceEEEEe--eCchhhHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhC
Q 011387 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG 281 (487)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~ 281 (487)
.. ..+.+..++ .++..+.++|..+..... .....++...+.+.+.. ..+.++||||+|++.++.+++.|.+.
T Consensus 376 ~~-~e~~~~Y~l---~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~ 451 (790)
T PRK09200 376 EE-KEFFEVYNM---EVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA 451 (790)
T ss_pred HH-HHHHHHhCC---cEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 32 344443333 345556777776643321 12235678888888765 36889999999999999999999999
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcccccccc---CCCc-----EEEEeCCCCCHHHHHHHHhccCCCC
Q 011387 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR---KDVR-----LVCHFNIPKSMEAFYQESGRAGRDQ 353 (487)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDi---p~v~-----~VI~~~~p~s~~~y~Qr~GRagR~g 353 (487)
|+++..+||++.+.++..+...+..| .|+|||++++||+|+ |+|. +||+|++|.|...|.||+||+||.|
T Consensus 452 gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G 529 (790)
T PRK09200 452 GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQG 529 (790)
T ss_pred CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCC
Confidence 99999999999998888887777666 799999999999999 6998 9999999999999999999999999
Q ss_pred CCceEEEEEecchH
Q 011387 354 LPSKSLLYYGMDDR 367 (487)
Q Consensus 354 ~~g~~i~~~~~~d~ 367 (487)
.+|.+++|++.+|.
T Consensus 530 ~~G~s~~~is~eD~ 543 (790)
T PRK09200 530 DPGSSQFFISLEDD 543 (790)
T ss_pred CCeeEEEEEcchHH
Confidence 99999999997765
No 66
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=5.8e-34 Score=307.58 Aligned_cols=335 Identities=23% Similarity=0.267 Sum_probs=249.0
Q ss_pred hhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC-----CCeEEEeCcHHHHHHHHHH
Q 011387 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVI 96 (487)
Q Consensus 22 l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~~L~~q~~~ 96 (487)
....+...|.. .|...|+++|.+|+..+.+|+|++|..|||||||.||++|++.. ..++|+|.||+||++||.+
T Consensus 55 ~~~~l~~~l~~-~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~ 133 (851)
T COG1205 55 RDESLKSALVK-AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAE 133 (851)
T ss_pred hhhHHHHHHHH-hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHH
Confidence 33445677776 58889999999999999999999999999999999999999864 5578999999999999999
Q ss_pred HHHHc----C--CceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccc
Q 011387 97 GLKEK----G--IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (487)
Q Consensus 97 ~l~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~ 170 (487)
+++++ + +....+++.....++..+.. . ..+|++++|+++-..-....-.......++++||+||+|..
T Consensus 134 rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~----~--pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY 207 (851)
T COG1205 134 RLRELISDLPGKVTFGRYTGDTPPEERRAIIR----N--PPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY 207 (851)
T ss_pred HHHHHHHhCCCcceeeeecCCCChHHHHHHHh----C--CCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec
Confidence 99873 4 66777777777776653332 2 37788888876643111111122333445999999999987
Q ss_pred cc-cCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeE-EecCCCCCcceEEEEeeCc------
Q 011387 171 SS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDL------ 241 (487)
Q Consensus 171 ~~-~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~v~~~~~------ 241 (487)
-. .|.+.....++|..+.+.++ +.++|+.|||....... ...+....... +..+..+....+.+.....
T Consensus 208 rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~--~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~ 285 (851)
T COG1205 208 RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEF--AEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAE 285 (851)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHH--HHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhh
Confidence 54 56667777777777777766 67899999998765322 44443333333 3333333333333332220
Q ss_pred --hhhHHHHHHHHHHh--CCCceEEEEecccchHHHHH----HHHHhCC----CceEEecCCCCHHHHHHHHHHHhcCCC
Q 011387 242 --LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELS----AYLSAGG----ISCAAYHAGLNDKARSSVLDDWISSRK 309 (487)
Q Consensus 242 --~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~----~~L~~~g----~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (487)
.......+..++.. ..+-++|+|+.+++.++.++ ..+...+ ..+..|+|++..++|.+++..|++|+.
T Consensus 286 ~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~ 365 (851)
T COG1205 286 SIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGEL 365 (851)
T ss_pred hcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCc
Confidence 01233333333332 26778999999999999997 4444445 568899999999999999999999999
Q ss_pred cEEEEcCccccccccCCCcEEEEeCCCC-CHHHHHHHHhccCCCCCCceEEEEEecc
Q 011387 310 QVVVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (487)
Q Consensus 310 ~vLVaT~~~~~GiDip~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~~~~~~ 365 (487)
.++++|+++.-|||+.+++.||.++.|. +..++.|+.|||||.++.+..+..+..+
T Consensus 366 ~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 366 LGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred cEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 9999999999999999999999999999 9999999999999999777777776644
No 67
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=9.9e-34 Score=304.66 Aligned_cols=302 Identities=18% Similarity=0.162 Sum_probs=207.9
Q ss_pred HHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC---CCeEEEeCcHHHHHHHHHHHHHH-cCCceEEecCCCCHHHHH
Q 011387 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKT 118 (487)
Q Consensus 43 Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~~ 118 (487)
-.+++.++.+++++++.|+||||||.+|.++++.. +++++|+.|+++++.|..+++.+ ++.......+......
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~-- 84 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE-- 84 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc--
Confidence 34566777788999999999999999999888754 57899999999999999998854 4432211111000000
Q ss_pred HHHHHHhcCCCcccEEEeCcccccChhhHHH-HHhhhhcCCccEEEEecccc-ccccCCCChHHHHHHHHHHHhC-CCCc
Q 011387 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSK-LKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNYL-PDVP 195 (487)
Q Consensus 119 ~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~-l~~~~~~~~l~~lViDEah~-~~~~g~~f~~~~~~l~~l~~~~-~~~~ 195 (487)
. ......++.++|| +.+.. +.....+..+++|||||+|. ..+. ||.-. .+..+...+ ++.+
T Consensus 85 ----~--~~s~~t~I~v~T~------G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~--Dl~L~--ll~~i~~~lr~dlq 148 (819)
T TIGR01970 85 ----N--KVSRRTRLEVVTE------GILTRMIQDDPELDGVGALIFDEFHERSLDA--DLGLA--LALDVQSSLREDLK 148 (819)
T ss_pred ----c--ccCCCCcEEEECC------cHHHHHHhhCcccccCCEEEEeccchhhhcc--chHHH--HHHHHHHhcCCCce
Confidence 0 0112245655555 44433 33444577899999999995 4442 22211 122333333 4789
Q ss_pred EEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhh----HHHHHHHHHHhCCCceEEEEecccchH
Q 011387 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDD----AYADLCSVLKANGDTCAIVYCLERTTC 271 (487)
Q Consensus 196 ~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~l~~~~~~~~iIf~~s~~~~ 271 (487)
+++||||++.... .+.++ ..+.+...+-..| +...+........ ....+...++. ..+.+|||+++++++
T Consensus 149 lIlmSATl~~~~l---~~~l~-~~~vI~~~gr~~p-Ve~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI 222 (819)
T TIGR01970 149 ILAMSATLDGERL---SSLLP-DAPVVESEGRSFP-VEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEI 222 (819)
T ss_pred EEEEeCCCCHHHH---HHHcC-CCcEEEecCccee-eeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHH
Confidence 9999999987653 23332 2233222211111 1111111111111 11233444443 356799999999999
Q ss_pred HHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCC-----------
Q 011387 272 DELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK----------- 337 (487)
Q Consensus 272 ~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~----------- 337 (487)
+.+++.|.+ .++.+..+||+|++++|.++++.|.+|+.+|||||+++++|||+|+|++||++++|+
T Consensus 223 ~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~ 302 (819)
T TIGR01970 223 RRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGIT 302 (819)
T ss_pred HHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCc
Confidence 999999987 478899999999999999999999999999999999999999999999999999985
Q ss_pred -------CHHHHHHHHhccCCCCCCceEEEEEecchHHH
Q 011387 338 -------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (487)
Q Consensus 338 -------s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~ 369 (487)
|..+|.||+|||||. ++|.|+.+|+.++...
T Consensus 303 ~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 303 RLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred eeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 446799999999999 7999999999877654
No 68
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=6.5e-34 Score=306.78 Aligned_cols=297 Identities=19% Similarity=0.244 Sum_probs=206.6
Q ss_pred HHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC---CCeEEEeCcHHHHHHHHHHHHHH-cCCc----eEEecCCCCHH
Q 011387 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIA----GEFLSSTQTMQ 115 (487)
Q Consensus 44 ~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q~~~~l~~-~~~~----~~~~~~~~~~~ 115 (487)
.+++.++.+++++++.||||||||.+|.++++.. +++++|+.|+++++.|..+++.. ++.. +........
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~-- 88 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES-- 88 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc--
Confidence 4566677788999999999999999999988864 46899999999999999998854 3332 222211110
Q ss_pred HHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH-HhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CC
Q 011387 116 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PD 193 (487)
Q Consensus 116 ~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l-~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~-~~ 193 (487)
......++. +.|+|.+..+ .+...+..+++|||||+|...- ..|+.- .-+..+.+.+ ++
T Consensus 89 ----------~~~~~t~I~------v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l-~~Dl~L--~ll~~i~~~lr~~ 149 (812)
T PRK11664 89 ----------KVGPNTRLE------VVTEGILTRMIQRDPELSGVGLVILDEFHERSL-QADLAL--ALLLDVQQGLRDD 149 (812)
T ss_pred ----------ccCCCCcEE------EEChhHHHHHHhhCCCcCcCcEEEEcCCCcccc-ccchHH--HHHHHHHHhCCcc
Confidence 001123454 4455544443 3444577899999999997321 111211 1122333333 47
Q ss_pred CcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhhHH-----HHHHHHHHhCCCceEEEEeccc
Q 011387 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAY-----ADLCSVLKANGDTCAIVYCLER 268 (487)
Q Consensus 194 ~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~l~~~l~~~~~~~~iIf~~s~ 268 (487)
.++++||||++.... ...+. ..+.+....... .+...+..... .+++ ..+...+.. ..+.+|||++++
T Consensus 150 lqlilmSATl~~~~l---~~~~~-~~~~I~~~gr~~-pV~~~y~~~~~-~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~ 222 (812)
T PRK11664 150 LKLLIMSATLDNDRL---QQLLP-DAPVIVSEGRSF-PVERRYQPLPA-HQRFDEAVARATAELLRQ-ESGSLLLFLPGV 222 (812)
T ss_pred ceEEEEecCCCHHHH---HHhcC-CCCEEEecCccc-cceEEeccCch-hhhHHHHHHHHHHHHHHh-CCCCEEEEcCCH
Confidence 899999999987533 23222 223322221111 12111111111 1222 123444443 457799999999
Q ss_pred chHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCC--------
Q 011387 269 TTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-------- 337 (487)
Q Consensus 269 ~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~-------- 337 (487)
++++.+++.|++ .++.+..+||+|+.++|.++++.|.+|+.+|||||+++++|||+|+|++||++++++
T Consensus 223 ~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~ 302 (812)
T PRK11664 223 GEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKT 302 (812)
T ss_pred HHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccC
Confidence 999999999987 578899999999999999999999999999999999999999999999999988875
Q ss_pred ----------CHHHHHHHHhccCCCCCCceEEEEEecchHHH
Q 011387 338 ----------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (487)
Q Consensus 338 ----------s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~ 369 (487)
|.++|.||+|||||. .+|.|+.+|+..+...
T Consensus 303 g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 303 GLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAER 343 (812)
T ss_pred CcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhh
Confidence 446899999999999 6999999999876643
No 69
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=5.5e-33 Score=291.05 Aligned_cols=327 Identities=17% Similarity=0.157 Sum_probs=227.3
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 011387 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (487)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~---- 100 (487)
.+..+.+|. +|+|.+++..+..++..++.|+||+|||++|.+|++. .+..++|++|+++|+.|+.+.+..
T Consensus 61 Ea~~R~lgl---rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~ 137 (762)
T TIGR03714 61 EADKRVLGM---FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEW 137 (762)
T ss_pred HHHHhhcCC---CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhh
Confidence 344455564 5555555555554555799999999999999999864 367799999999999999998854
Q ss_pred cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh---hhhcCCccEEEEeccccccccC---
Q 011387 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCISSWG--- 174 (487)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~---~~~~~~l~~lViDEah~~~~~g--- 174 (487)
+|+.+.....+.............. ...+++|+||..+...-+.+.+.. ......+.++||||||+++-..
T Consensus 138 LGLsv~~~~~~s~~~~~~~~~rr~~---y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeart 214 (762)
T TIGR03714 138 LGLTVSLGVVDDPDEEYDANEKRKI---YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQT 214 (762)
T ss_pred cCCcEEEEECCCCccccCHHHHHHh---CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcC
Confidence 6888776554321111100001111 127888888887754333333321 2235678999999999984100
Q ss_pred ----------------------------CCCh------------HHHHHHHH----------------------HHHh--
Q 011387 175 ----------------------------HDFR------------PSYRKLSS----------------------LRNY-- 190 (487)
Q Consensus 175 ----------------------------~~f~------------~~~~~l~~----------------------l~~~-- 190 (487)
.+|. .....+.. ++..
T Consensus 215 pliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~ 294 (762)
T TIGR03714 215 PLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYL 294 (762)
T ss_pred CeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHH
Confidence 0110 00000000 0000
Q ss_pred C----------------------------------------------C----------------CCcEEEEecCCChHHH
Q 011387 191 L----------------------------------------------P----------------DVPILALTATAAPKVQ 208 (487)
Q Consensus 191 ~----------------------------------------------~----------------~~~~i~lSAT~~~~~~ 208 (487)
+ + -..+.+||+|+... .
T Consensus 295 ~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~-~ 373 (762)
T TIGR03714 295 FKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVA-E 373 (762)
T ss_pred HhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhH-H
Confidence 0 0 11367888887543 3
Q ss_pred HHHHHHhcCCCCeEEecCCCCCcceEEE---EeeCchhhHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhCCC
Q 011387 209 KDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI 283 (487)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~ 283 (487)
.++.+..+ -.++..+.++|.++... .+.. ...++..+.+.+++ ..+.++||||+|++.++.++..|.+.|+
T Consensus 374 ~Ef~~iY~---l~v~~IPt~kp~~r~d~~d~i~~~-~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi 449 (762)
T TIGR03714 374 KEFIETYS---LSVVKIPTNKPIIRIDYPDKIYAT-LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGI 449 (762)
T ss_pred HHHHHHhC---CCEEEcCCCCCeeeeeCCCeEEEC-HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCC
Confidence 34444333 33566677777776543 2222 25678888888765 4678999999999999999999999999
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccC---------CCcEEEEeCCCCCHHHHHHHHhccCCCCC
Q 011387 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---------DVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (487)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip---------~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 354 (487)
++..+||++.++++..+.+.+..| .|+|||++++||+|++ ++.+|++++.|..... .||+||+||.|.
T Consensus 450 ~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~ 526 (762)
T TIGR03714 450 PHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGD 526 (762)
T ss_pred CEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCC
Confidence 999999999998888877776666 7999999999999999 9999999999988776 999999999999
Q ss_pred CceEEEEEecchHH
Q 011387 355 PSKSLLYYGMDDRR 368 (487)
Q Consensus 355 ~g~~i~~~~~~d~~ 368 (487)
+|.+++|++.+|.-
T Consensus 527 ~G~s~~~is~eD~l 540 (762)
T TIGR03714 527 PGSSQFFVSLEDDL 540 (762)
T ss_pred ceeEEEEEccchhh
Confidence 99999999987653
No 70
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.7e-32 Score=298.66 Aligned_cols=316 Identities=20% Similarity=0.264 Sum_probs=222.4
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHHHc-CC---ceEEe
Q 011387 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEK-GI---AGEFL 108 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~~-~~---~~~~~ 108 (487)
-++|++|.+++..++.+ ++++++|||+|||+++++++.. .++++|||+|+++|+.|+.+.++.. ++ ....+
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 92 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVF 92 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 46899999999988877 9999999999999998877653 3789999999999999999999884 44 55556
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHH
Q 011387 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (487)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~ 188 (487)
++......+...+. ..+++++||+++... .+........++++||||||++.... .+. ..+..++
T Consensus 93 ~g~~~~~~r~~~~~-------~~~iiv~T~~~l~~~----l~~~~~~~~~~~liVvDEaH~~~~~~-~~~---~i~~~~~ 157 (773)
T PRK13766 93 TGEVSPEKRAELWE-------KAKVIVATPQVIEND----LIAGRISLEDVSLLIFDEAHRAVGNY-AYV---YIAERYH 157 (773)
T ss_pred eCCCCHHHHHHHHh-------CCCEEEECHHHHHHH----HHcCCCChhhCcEEEEECCccccccc-cHH---HHHHHHH
Confidence 66665554433332 256777776654321 11233445679999999999986421 111 1223334
Q ss_pred HhCCCCcEEEEecCCChH--HHHHHHHHhcCCCCeEEe-------cCCCCCcceEEE-----------------------
Q 011387 189 NYLPDVPILALTATAAPK--VQKDVMESLCLQNPLVLK-------SSFNRPNLFYEV----------------------- 236 (487)
Q Consensus 189 ~~~~~~~~i~lSAT~~~~--~~~~i~~~l~~~~~~~~~-------~~~~~~~~~~~v----------------------- 236 (487)
...+...+++||||+... ....+.+.+++....+.. .....+.+.+..
T Consensus 158 ~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~ 237 (773)
T PRK13766 158 EDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLK 237 (773)
T ss_pred hcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHH
Confidence 444456699999998432 223334443322110000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 011387 237 -------------------------------------------------------------------------------- 236 (487)
Q Consensus 237 -------------------------------------------------------------------------------- 236 (487)
T Consensus 238 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~ 317 (773)
T PRK13766 238 KLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSS 317 (773)
T ss_pred HHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhcccc
Confidence
Q ss_pred ----------------------EeeCchhhHHHHHHHHHHh----CCCceEEEEecccchHHHHHHHHHhCCCceEEecC
Q 011387 237 ----------------------RYKDLLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHA 290 (487)
Q Consensus 237 ----------------------~~~~~~~~~~~~l~~~l~~----~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~ 290 (487)
........|+..|.++++. .++.++||||+++..|+.+++.|...|+.+..+||
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g 397 (773)
T PRK13766 318 GGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVG 397 (773)
T ss_pred CCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEc
Confidence 0000001234444455543 46789999999999999999999999999999988
Q ss_pred C--------CCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEE
Q 011387 291 G--------LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (487)
Q Consensus 291 ~--------l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~ 362 (487)
. +++.+|.++++.|++|+.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.| +|.+++++
T Consensus 398 ~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~ 476 (773)
T PRK13766 398 QASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLI 476 (773)
T ss_pred cccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEE
Confidence 6 99999999999999999999999999999999999999999999999999999999999986 48888887
Q ss_pred ecchHHH
Q 011387 363 GMDDRRR 369 (487)
Q Consensus 363 ~~~d~~~ 369 (487)
..+....
T Consensus 477 ~~~t~ee 483 (773)
T PRK13766 477 AKGTRDE 483 (773)
T ss_pred eCCChHH
Confidence 7655443
No 71
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=298.82 Aligned_cols=323 Identities=20% Similarity=0.244 Sum_probs=229.5
Q ss_pred CCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHH-cCCCEEEEcCCCchhhHHHHHhHhcC----CCeEEEeCcHHHHHHH
Q 011387 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMEN 93 (487)
Q Consensus 19 ~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l-~~~dvlv~apTGsGKTl~~~lp~l~~----~~~~lvl~P~~~L~~q 93 (487)
...+.+.+...++. .|+..+.+.|+.++...+ +++|+++++|||||||+++++.++.. ++++|+|+|+++|+++
T Consensus 13 ~~~~~~~v~~i~~~-~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~E 91 (766)
T COG1204 13 KVKLDDRVLEILKG-DGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEE 91 (766)
T ss_pred cccccHHHHHHhcc-CChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHH
Confidence 34466777777776 688889998888887654 56999999999999999999888754 5799999999999999
Q ss_pred HHHHHH---HcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCCccEEEEeccc
Q 011387 94 QVIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEAH 168 (487)
Q Consensus 94 ~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l~~lViDEah 168 (487)
.+++++ .+|+++...+++....... + ...+|+++|||.+. .+.+ ......++++||||+|
T Consensus 92 k~~~~~~~~~~GirV~~~TgD~~~~~~~-----l----~~~~ViVtT~EK~D------sl~R~~~~~~~~V~lvViDEiH 156 (766)
T COG1204 92 KYEEFSRLEELGIRVGISTGDYDLDDER-----L----ARYDVIVTTPEKLD------SLTRKRPSWIEEVDLVVIDEIH 156 (766)
T ss_pred HHHHhhhHHhcCCEEEEecCCcccchhh-----h----ccCCEEEEchHHhh------HhhhcCcchhhcccEEEEeeee
Confidence 999988 6899999988876543311 1 12677777777553 2211 1134568999999999
Q ss_pred ccccc--CCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCe-EEecCCCCCcceE--EEEeeC--c
Q 011387 169 CISSW--GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFY--EVRYKD--L 241 (487)
Q Consensus 169 ~~~~~--g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~--~v~~~~--~ 241 (487)
.+.+. |.... ..+.+.+...+.++++++|||.++. .++..+++-.... .+....-...+.+ .+.... .
T Consensus 157 ~l~d~~RG~~lE---~iv~r~~~~~~~~rivgLSATlpN~--~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~ 231 (766)
T COG1204 157 LLGDRTRGPVLE---SIVARMRRLNELIRIVGLSATLPNA--EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKK 231 (766)
T ss_pred ecCCcccCceeh---hHHHHHHhhCcceEEEEEeeecCCH--HHHHHHhCCcccccCCCCcccccCCccceEEEEecCcc
Confidence 99773 44322 2333444455568999999999876 5668888765331 1211111111111 111111 0
Q ss_pred ---hhhHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhC---------------------C-------------
Q 011387 242 ---LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG---------------------G------------- 282 (487)
Q Consensus 242 ---~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~---------------------g------------- 282 (487)
.........+.+.. ..++++||||+|++.+...|+.|... +
T Consensus 232 k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e 311 (766)
T COG1204 232 KTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAE 311 (766)
T ss_pred ccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHH
Confidence 01111222222211 25678999999999999999988830 0
Q ss_pred ---CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEE----EeC-----CCCCHHHHHHHHhccC
Q 011387 283 ---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFN-----IPKSMEAFYQESGRAG 350 (487)
Q Consensus 283 ---~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI----~~~-----~p~s~~~y~Qr~GRag 350 (487)
..+.++|+||+.++|..+.+.|+.|.++|||||+.++.|+|+|.-++|| -|+ .+-+.-++.|+.||||
T Consensus 312 ~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAG 391 (766)
T COG1204 312 LVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAG 391 (766)
T ss_pred HHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCC
Confidence 1467899999999999999999999999999999999999999766666 455 4568899999999999
Q ss_pred CCCC--CceEEEEE
Q 011387 351 RDQL--PSKSLLYY 362 (487)
Q Consensus 351 R~g~--~g~~i~~~ 362 (487)
|.|- .|.++++.
T Consensus 392 RPg~d~~G~~~i~~ 405 (766)
T COG1204 392 RPGYDDYGEAIILA 405 (766)
T ss_pred CCCcCCCCcEEEEe
Confidence 9874 45666665
No 72
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=6e-32 Score=288.76 Aligned_cols=321 Identities=19% Similarity=0.212 Sum_probs=233.2
Q ss_pred CCcHHHHHHHHHHHcC---CCEEEEcCCCchhhHHHHHhH---hcCCCeEEEeCcHHHHHHHHHHHHHH-cCCceEEecC
Q 011387 38 QFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSS 110 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~---~dvlv~apTGsGKTl~~~lp~---l~~~~~~lvl~P~~~L~~q~~~~l~~-~~~~~~~~~~ 110 (487)
.+++.|+++++.+.++ +++++.||||||||.+|+.++ +..+++++|++|+++|+.|+.+++++ +|.....+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s 223 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHS 223 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5899999999999874 789999999999999997664 45588999999999999999999987 6888899999
Q ss_pred CCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHH--HHHHHHH
Q 011387 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLR 188 (487)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~--~~l~~l~ 188 (487)
+.+..++...|..+..+. .+++++|+..+. ....+++++||||+|..+.++.+ .+.| +.+..++
T Consensus 224 ~~s~~~r~~~~~~~~~g~--~~IVVgTrsal~-----------~p~~~l~liVvDEeh~~s~~~~~-~p~y~~r~va~~r 289 (679)
T PRK05580 224 GLSDGERLDEWRKAKRGE--AKVVIGARSALF-----------LPFKNLGLIIVDEEHDSSYKQQE-GPRYHARDLAVVR 289 (679)
T ss_pred CCCHHHHHHHHHHHHcCC--CCEEEeccHHhc-----------ccccCCCEEEEECCCccccccCc-CCCCcHHHHHHHH
Confidence 998888888888777665 678777775442 23467999999999998766543 3333 5566667
Q ss_pred HhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCC---CCcceEEEEeeCchh----hHHHHHHHHHHhC--CCc
Q 011387 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRYKDLLD----DAYADLCSVLKAN--GDT 259 (487)
Q Consensus 189 ~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~~~~~v~~~~~~~----~~~~~l~~~l~~~--~~~ 259 (487)
....+.+++++|||++.+....+.. +.-....+...+. .|.+...-....... .....+.+.+++. .++
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~ 367 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGE 367 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCC
Confidence 7778999999999998776654432 1111111111111 222221110000000 0112333334332 456
Q ss_pred eEEEEeccc------------------------------------------------------------chHHHHHHHHH
Q 011387 260 CAIVYCLER------------------------------------------------------------TTCDELSAYLS 279 (487)
Q Consensus 260 ~~iIf~~s~------------------------------------------------------------~~~~~l~~~L~ 279 (487)
++|||+|++ ..++.+++.|+
T Consensus 368 qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~ 447 (679)
T PRK05580 368 QVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELA 447 (679)
T ss_pred eEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHH
Confidence 788888753 14578889998
Q ss_pred hC--CCceEEecCCCC--HHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCC--C----------CHHHHH
Q 011387 280 AG--GISCAAYHAGLN--DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP--K----------SMEAFY 343 (487)
Q Consensus 280 ~~--g~~~~~~h~~l~--~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p--~----------s~~~y~ 343 (487)
+. +.++..+|+++. .++++++++.|.+|+.+|||+|+++++|+|+|+|++|+.++.. - ....|+
T Consensus 448 ~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~ 527 (679)
T PRK05580 448 ELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLT 527 (679)
T ss_pred HhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHH
Confidence 86 788999999986 4678999999999999999999999999999999999766543 2 346799
Q ss_pred HHHhccCCCCCCceEEEEEecchHHHHHHHH
Q 011387 344 QESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (487)
Q Consensus 344 Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~ 374 (487)
|++||+||.++.|.+++.....+-..++.+.
T Consensus 528 q~~GRagR~~~~g~viiqT~~p~~~~~~~~~ 558 (679)
T PRK05580 528 QVAGRAGRAEKPGEVLIQTYHPEHPVIQALL 558 (679)
T ss_pred HHHhhccCCCCCCEEEEEeCCCCCHHHHHHH
Confidence 9999999999999999876555444444443
No 73
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2.5e-32 Score=303.74 Aligned_cols=292 Identities=19% Similarity=0.250 Sum_probs=201.2
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHh----cCCCeEEEeCcHHHHHHHHHHHHHH
Q 011387 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 25 ~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l----~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
++.+.+.+..|+ .|+++|+.+++.++.|+|++++||||+|||+ |.+|+. ..+.+++||+||++|+.|+.+.++.
T Consensus 66 ~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 66 EFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHH
Confidence 344445554465 6999999999999999999999999999997 555543 2378899999999999999999887
Q ss_pred c----CCceE---EecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEecccccccc
Q 011387 101 K----GIAGE---FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (487)
Q Consensus 101 ~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~ 173 (487)
+ ++... .++++.....+......+..+. .+++++ ||+++......... .++++||||||+++++
T Consensus 144 l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~--~dIlV~------Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~~ 214 (1171)
T TIGR01054 144 LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGD--FDILIT------TTMFLSKNYDELGP-KFDFIFVDDVDALLKA 214 (1171)
T ss_pred HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCC--CCEEEE------CHHHHHHHHHHhcC-CCCEEEEeChHhhhhc
Confidence 5 33332 3567777666655555555544 556544 55555444332222 7999999999999985
Q ss_pred C---------CCChHH-HHH-------------------HHHHHHhCC-CCc--EEEEecCC-ChHHHHHHHHHhcCCCC
Q 011387 174 G---------HDFRPS-YRK-------------------LSSLRNYLP-DVP--ILALTATA-APKVQKDVMESLCLQNP 220 (487)
Q Consensus 174 g---------~~f~~~-~~~-------------------l~~l~~~~~-~~~--~i~lSAT~-~~~~~~~i~~~l~~~~~ 220 (487)
+ .+|.+. ... +..+.+..| +.+ ++++|||. +......+...+ ...
T Consensus 215 ~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~l--l~~ 292 (1171)
T TIGR01054 215 SKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFREL--LGF 292 (1171)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccc--cce
Confidence 4 235543 111 111222333 333 56789995 443332222111 011
Q ss_pred eEEecCCCCCcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEeccc---chHHHHHHHHHhCCCceEEecCCCCHHHH
Q 011387 221 LVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER---TTCDELSAYLSAGGISCAAYHAGLNDKAR 297 (487)
Q Consensus 221 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~---~~~~~l~~~L~~~g~~~~~~h~~l~~~~R 297 (487)
.+-.......++........ .+...|.++++.. +..+||||+|+ +.|+.+++.|.+.|+++..+||++++
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~---~~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~--- 365 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDE---DLKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK--- 365 (1171)
T ss_pred EecCccccccceEEEEEecc---cHHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH---
Confidence 11111222344443333222 2234566666654 35799999999 99999999999999999999999973
Q ss_pred HHHHHHHhcCCCcEEEE----cCccccccccCC-CcEEEEeCCCC
Q 011387 298 SSVLDDWISSRKQVVVA----TVAFGMGIDRKD-VRLVCHFNIPK 337 (487)
Q Consensus 298 ~~~~~~f~~g~~~vLVa----T~~~~~GiDip~-v~~VI~~~~p~ 337 (487)
+++++|++|+++|||| |++++||||+|+ |++||+||+|+
T Consensus 366 -~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 -EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred -HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 6899999999999999 589999999999 89999999996
No 74
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.5e-32 Score=284.32 Aligned_cols=325 Identities=20% Similarity=0.215 Sum_probs=237.6
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 011387 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (487)
Q Consensus 26 ~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (487)
+..+..+.+|+ .|++.|..+...+..|+ ++.|+||+|||+++.+|++. .+..+.|++|+..|+.|..+.+..
T Consensus 45 vrEa~~R~lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 45 VREASKRVLGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred HHHHHHHHhCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 34555677786 48889999988887776 99999999999999999853 367799999999999999998776
Q ss_pred --cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH---HhhhhcCCccEEEEeccccccc---
Q 011387 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS--- 172 (487)
Q Consensus 101 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l---~~~~~~~~l~~lViDEah~~~~--- 172 (487)
+|+.+..+.++.....+...+. .+++|+||.-++-.-....+ ......+.+.++||||+|.++-
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y~--------~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDea 193 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAYA--------CDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEA 193 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhcC--------CCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhh
Confidence 5888888888777655443321 57888877755321111111 1233567799999999999841
Q ss_pred ------cC----C------------------CCh------------HHHHHHHH----------------------HHHh
Q 011387 173 ------WG----H------------------DFR------------PSYRKLSS----------------------LRNY 190 (487)
Q Consensus 173 ------~g----~------------------~f~------------~~~~~l~~----------------------l~~~ 190 (487)
-| . +|. .....+.. ++..
T Consensus 194 RtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~ 273 (745)
T TIGR00963 194 RTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAK 273 (745)
T ss_pred hhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHH
Confidence 01 0 110 00000110 1100
Q ss_pred --C----------------------------------------------C----------------CCcEEEEecCCChH
Q 011387 191 --L----------------------------------------------P----------------DVPILALTATAAPK 206 (487)
Q Consensus 191 --~----------------------------------------------~----------------~~~~i~lSAT~~~~ 206 (487)
+ + -..+.+||+|+..+
T Consensus 274 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 353 (745)
T TIGR00963 274 ELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTE 353 (745)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHH
Confidence 0 0 01356788887543
Q ss_pred HHHHHHHHhcCCCCeEEecCCCCCcceEEEE---eeCchhhHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhC
Q 011387 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVR---YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG 281 (487)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~ 281 (487)
...+.+..++ .++..+.++|..+.... +.+ ..+++..+.+.+.. ..+.|+||||+|++.++.+++.|.+.
T Consensus 354 -~~E~~~iY~l---~vv~IPtnkp~~R~d~~d~i~~t-~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~ 428 (745)
T TIGR00963 354 -EEEFEKIYNL---EVVVVPTNRPVIRKDLSDLVYKT-EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER 428 (745)
T ss_pred -HHHHHHHhCC---CEEEeCCCCCeeeeeCCCeEEcC-HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc
Confidence 2334444433 35556667776654422 222 24577777776633 47899999999999999999999999
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCC-------CcEEEEeCCCCCHHHHHHHHhccCCCCC
Q 011387 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD-------VRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (487)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~-------v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 354 (487)
|++...+||+ +.+|+..+..|..+...|+|||+++|||+|++. ..+||+++.|.|...|.|+.||+||.|.
T Consensus 429 gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~ 506 (745)
T TIGR00963 429 GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGD 506 (745)
T ss_pred CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCC
Confidence 9999999998 788999999999999999999999999999998 5599999999999999999999999999
Q ss_pred CceEEEEEecchHH
Q 011387 355 PSKSLLYYGMDDRR 368 (487)
Q Consensus 355 ~g~~i~~~~~~d~~ 368 (487)
+|.+..|++.+|.-
T Consensus 507 ~G~s~~~ls~eD~l 520 (745)
T TIGR00963 507 PGSSRFFLSLEDNL 520 (745)
T ss_pred CcceEEEEeccHHH
Confidence 99999999988653
No 75
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=2.3e-32 Score=280.93 Aligned_cols=314 Identities=25% Similarity=0.371 Sum_probs=208.4
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC-----CCeEEEeCcHHHHHHHHHHHHHHcCCceE--Eec
Q 011387 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEKGIAGE--FLS 109 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~~L~~q~~~~l~~~~~~~~--~~~ 109 (487)
-.+|++|.+.+..+| |++++|++|||+|||.++..-++.. .+++|+++|++-|+.||...+...+++.. ...
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~~l 139 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTGQL 139 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccceeec
Confidence 379999999999999 9999999999999999988777653 78999999999999999988888775521 122
Q ss_pred CC-CCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhh--hhcCCccEEEEeccccccccCCCChHHHHHHHH
Q 011387 110 ST-QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (487)
Q Consensus 110 ~~-~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~--~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~ 186 (487)
++ ........++. ..++++.||.++.. .|.+. ..++.+.++||||||+-..- +.|-...+.+-.
T Consensus 140 ~~~~~~~~r~~i~~-------s~~vff~TpQil~n-----dL~~~~~~~ls~fs~iv~DE~Hra~kn-~~Y~~Vmr~~l~ 206 (746)
T KOG0354|consen 140 GDTVPRSNRGEIVA-------SKRVFFRTPQILEN-----DLKSGLHDELSDFSLIVFDECHRTSKN-HPYNNIMREYLD 206 (746)
T ss_pred cCccCCCchhhhhc-------ccceEEeChHhhhh-----hcccccccccceEEEEEEccccccccc-ccHHHHHHHHHH
Confidence 22 22222222221 25677777766643 22111 11466899999999998652 223333333322
Q ss_pred HHHhCCCCcEEEEecCCChHHHH--HHHHHhcCC----CC---------------eE--E--------------------
Q 011387 187 LRNYLPDVPILALTATAAPKVQK--DVMESLCLQ----NP---------------LV--L-------------------- 223 (487)
Q Consensus 187 l~~~~~~~~~i~lSAT~~~~~~~--~i~~~l~~~----~~---------------~~--~-------------------- 223 (487)
+... ..++++||||+..+... .++..|... .. .. +
T Consensus 207 ~k~~--~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~ 284 (746)
T KOG0354|consen 207 LKNQ--GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQ 284 (746)
T ss_pred hhhc--cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHH
Confidence 2222 34999999999854221 111111111 00 00 0
Q ss_pred -------------ecCCCC----------Ccc----e------------------EEEEeeC------------------
Q 011387 224 -------------KSSFNR----------PNL----F------------------YEVRYKD------------------ 240 (487)
Q Consensus 224 -------------~~~~~~----------~~~----~------------------~~v~~~~------------------ 240 (487)
...+.. ++. . ..++..+
T Consensus 285 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~ 364 (746)
T KOG0354|consen 285 QLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYL 364 (746)
T ss_pred HHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHH
Confidence 000000 000 0 0000000
Q ss_pred ---------------------------chhhHHHHHHHHHH----hCCCceEEEEecccchHHHHHHHHHh---CCCceE
Q 011387 241 ---------------------------LLDDAYADLCSVLK----ANGDTCAIVYCLERTTCDELSAYLSA---GGISCA 286 (487)
Q Consensus 241 ---------------------------~~~~~~~~l~~~l~----~~~~~~~iIf~~s~~~~~~l~~~L~~---~g~~~~ 286 (487)
....++..+.+.+. ..++.++||||.+|+.|+.|.++|.+ .|++..
T Consensus 365 ~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~ 444 (746)
T KOG0354|consen 365 KLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAE 444 (746)
T ss_pred HHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccc
Confidence 00022333333332 23677899999999999999999983 234433
Q ss_pred Ee--------cCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceE
Q 011387 287 AY--------HAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 358 (487)
Q Consensus 287 ~~--------h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~ 358 (487)
.+ ..+|++.++.+++++|++|+++|||||+++++|+|++.++.||-||...|+-..+||.|| ||. +.|.|
T Consensus 445 ~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~ 522 (746)
T KOG0354|consen 445 IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKC 522 (746)
T ss_pred eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeE
Confidence 33 348999999999999999999999999999999999999999999999999999999999 997 57899
Q ss_pred EEEEecchHH
Q 011387 359 LLYYGMDDRR 368 (487)
Q Consensus 359 i~~~~~~d~~ 368 (487)
+++++..+..
T Consensus 523 vll~t~~~~~ 532 (746)
T KOG0354|consen 523 VLLTTGSEVI 532 (746)
T ss_pred EEEEcchhHH
Confidence 9998844443
No 76
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.1e-31 Score=281.38 Aligned_cols=304 Identities=17% Similarity=0.168 Sum_probs=205.7
Q ss_pred CCcHHHHHHHHHHHc-C--CCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHc-CCc---eEEecC
Q 011387 38 QFRDKQLDAIQAVLS-G--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK-GIA---GEFLSS 110 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~-~--~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~-~~~---~~~~~~ 110 (487)
.+||+|++++..+.. | +..++++|||+|||++.+..+...+.++|||||+..|+.||.+++.++ .+. ...+.+
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg 334 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTS 334 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 589999999999874 3 378999999999999987766666788999999999999999999885 222 222222
Q ss_pred CCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhh----HHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHH
Q 011387 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF----MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (487)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~----~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~ 186 (487)
+... . . .....++++|..++..... ............++++|+||||.+.. .....
T Consensus 335 ~~k~----~----~---~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---------~~fr~ 394 (732)
T TIGR00603 335 DAKE----R----F---HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---------AMFRR 394 (732)
T ss_pred Cccc----c----c---ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---------HHHHH
Confidence 1100 0 0 0124577777776643211 01122233345689999999999853 22223
Q ss_pred HHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCC-------CCCcceE-EEEee-------------------
Q 011387 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-------NRPNLFY-EVRYK------------------- 239 (487)
Q Consensus 187 l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-------~~~~~~~-~v~~~------------------- 239 (487)
+...++....++||||+...... +.....+-.|.++..+. ...+..+ .+...
T Consensus 395 il~~l~a~~RLGLTATP~ReD~~-~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~ 473 (732)
T TIGR00603 395 VLTIVQAHCKLGLTATLVREDDK-ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRML 473 (732)
T ss_pred HHHhcCcCcEEEEeecCcccCCc-hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhH
Confidence 34444555689999999754321 11111112233322111 0111111 11110
Q ss_pred --CchhhHHHHHHHHHHhC--CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEEE
Q 011387 240 --DLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVA 314 (487)
Q Consensus 240 --~~~~~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~vLVa 314 (487)
.....++..+..+++.+ .+.++||||.+...++.+++.| + +..+||++++.+|.++++.|++| .+++||+
T Consensus 474 l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 474 LYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred HhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 01123444555555544 6789999999999999998877 2 46789999999999999999875 7899999
Q ss_pred cCccccccccCCCcEEEEeCCC-CCHHHHHHHHhccCCCCCCceE-------EEEEecchH
Q 011387 315 TVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKS-------LLYYGMDDR 367 (487)
Q Consensus 315 T~~~~~GiDip~v~~VI~~~~p-~s~~~y~Qr~GRagR~g~~g~~-------i~~~~~~d~ 367 (487)
|+++++|||+|++++||+++.| .|...|+||+||++|.+..|.+ +.+++.+..
T Consensus 549 SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 549 SKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred ecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999999999999999999987 5999999999999998766554 566665533
No 77
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.9e-31 Score=275.76 Aligned_cols=332 Identities=19% Similarity=0.248 Sum_probs=240.0
Q ss_pred HHHcCCCCCcHHHHHHHHHHHc-CCCEEEEcCCCchhhHHHHHhHhcC-------------CCeEEEeCcHHHHHHHHHH
Q 011387 31 RWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALAK-------------PGIVLVVSPLIALMENQVI 96 (487)
Q Consensus 31 ~~~fg~~~~~~~Q~~~i~~~l~-~~dvlv~apTGsGKTl~~~lp~l~~-------------~~~~lvl~P~~~L~~q~~~ 96 (487)
+..|+|..|+.+|.+++|.+.. +.|++|+||||+|||-.|+|.+|.. +.++|+|+|+++|+.+.++
T Consensus 103 k~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 103 KGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred hhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 3678999999999999998874 5799999999999999999888742 5689999999999999998
Q ss_pred HHHH----cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccc--cChhhHHHHHhhhhcCCccEEEEeccccc
Q 011387 97 GLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT--ATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (487)
Q Consensus 97 ~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v--~t~~~~~~l~~~~~~~~l~~lViDEah~~ 170 (487)
.+.+ +|+.+..++++....... +. +.+++++|||.. .|...... ..-.+.++++||||+|.+
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~te-i~--------~tqiiVTTPEKwDvvTRk~~~d---~~l~~~V~LviIDEVHlL 250 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTE-IA--------DTQIIVTTPEKWDVVTRKSVGD---SALFSLVRLVIIDEVHLL 250 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHH-HH--------hcCEEEecccceeeeeeeeccc---hhhhhheeeEEeeeehhh
Confidence 8776 589999998887654432 22 278999999953 33221111 112345889999999998
Q ss_pred cc-cCCCChHHHHHHHHHH-HhCCCCcEEEEecCCChHHHHHHHHHhcCCCC--eE-EecCCCCCcceEEEE---eeC--
Q 011387 171 SS-WGHDFRPSYRKLSSLR-NYLPDVPILALTATAAPKVQKDVMESLCLQNP--LV-LKSSFNRPNLFYEVR---YKD-- 240 (487)
Q Consensus 171 ~~-~g~~f~~~~~~l~~l~-~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~--~~-~~~~~~~~~~~~~v~---~~~-- 240 (487)
-+ .|.-.+....+...+. .....++++++|||.++- .|+..+|..+.+ .. +...+..-.+...+. .+.
T Consensus 251 hd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~--eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~ 328 (1230)
T KOG0952|consen 251 HDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY--EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNR 328 (1230)
T ss_pred cCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH--HHHHHHhcCCCccceeeecccccccceeeeEEeeecccch
Confidence 65 5543333333332222 234478999999999865 688999988632 22 223332223322221 110
Q ss_pred ch-----hhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhC----C-------------------CceEEecCCC
Q 011387 241 LL-----DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----G-------------------ISCAAYHAGL 292 (487)
Q Consensus 241 ~~-----~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~----g-------------------~~~~~~h~~l 292 (487)
.. +..++.+.++++ .+.+++|||.+++.+.+.|+.|.+. | .....+|+||
T Consensus 329 ~~~~~~d~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm 406 (1230)
T KOG0952|consen 329 QQKKNIDEVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGM 406 (1230)
T ss_pred hhhhhHHHHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhccccc
Confidence 00 112333444443 4678999999999999999988752 1 1357899999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEE----EeCCCC------CHHHHHHHHhccCCC--CCCceEEE
Q 011387 293 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFNIPK------SMEAFYQESGRAGRD--QLPSKSLL 360 (487)
Q Consensus 293 ~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI----~~~~p~------s~~~y~Qr~GRagR~--g~~g~~i~ 360 (487)
...+|.-+.+.|..|.++||+||..+++|+|+|+--++| .||..+ +.-+.+|..|||||. +..|.+++
T Consensus 407 ~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giI 486 (1230)
T KOG0952|consen 407 LRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGII 486 (1230)
T ss_pred chhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEE
Confidence 999999999999999999999999999999999665555 233222 567789999999995 46789999
Q ss_pred EEecchHHHHHHHHHhcc
Q 011387 361 YYGMDDRRRMEFILSKNQ 378 (487)
Q Consensus 361 ~~~~~d~~~~~~i~~~~~ 378 (487)
+.+.+.......++....
T Consensus 487 iTt~dkl~~Y~sLl~~~~ 504 (1230)
T KOG0952|consen 487 ITTRDKLDHYESLLTGQN 504 (1230)
T ss_pred EecccHHHHHHHHHcCCC
Confidence 998888888777776544
No 78
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.5e-31 Score=275.95 Aligned_cols=292 Identities=20% Similarity=0.240 Sum_probs=210.6
Q ss_pred EEEcCCCchhhHHHHHhH---hcCCCeEEEeCcHHHHHHHHHHHHHH-cCCceEEecCCCCHHHHHHHHHHHhcCCCccc
Q 011387 57 FCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLR 132 (487)
Q Consensus 57 lv~apTGsGKTl~~~lp~---l~~~~~~lvl~P~~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (487)
++.||||||||.+|+..+ +..+++++|++|+++|+.|+++++++ ++.....+++..+..++...|..+..+. .+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~--~~ 78 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGE--IL 78 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCC--CC
Confidence 468999999999986433 45688999999999999999999987 6788889999998888888888877665 67
Q ss_pred EEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHH--HHHHHHHHhCCCCcEEEEecCCChHHHHH
Q 011387 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNYLPDVPILALTATAAPKVQKD 210 (487)
Q Consensus 133 il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~--~~l~~l~~~~~~~~~i~lSAT~~~~~~~~ 210 (487)
++++|+..+.. ...++++|||||+|..+.++.++ +.| +.+..++....+.+++++|||++.+....
T Consensus 79 IVVGTrsalf~-----------p~~~l~lIIVDEeh~~sykq~~~-p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~ 146 (505)
T TIGR00595 79 VVIGTRSALFL-----------PFKNLGLIIVDEEHDSSYKQEEG-PRYHARDVAVYRAKKFNCPVVLGSATPSLESYHN 146 (505)
T ss_pred EEECChHHHcC-----------cccCCCEEEEECCCccccccccC-CCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHH
Confidence 77777664433 34578999999999998776543 333 45667788888999999999998776554
Q ss_pred HHHHhcCCCCeEEec---CCCCCcceEEEEeeCc-hhhHHHHHHHHHHhC--CCceEEEEecccch--------------
Q 011387 211 VMESLCLQNPLVLKS---SFNRPNLFYEVRYKDL-LDDAYADLCSVLKAN--GDTCAIVYCLERTT-------------- 270 (487)
Q Consensus 211 i~~~l~~~~~~~~~~---~~~~~~~~~~v~~~~~-~~~~~~~l~~~l~~~--~~~~~iIf~~s~~~-------------- 270 (487)
+.. +.-....+.. ....|.+...-..... .......+.+.+++. .++++|||+|++..
T Consensus 147 ~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~ 224 (505)
T TIGR00595 147 AKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILC 224 (505)
T ss_pred Hhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccC
Confidence 322 1000001100 0111222211000000 001112344444332 45679999887642
Q ss_pred ----------------------------------------------HHHHHHHHHhC--CCceEEecCCCCHHHH--HHH
Q 011387 271 ----------------------------------------------CDELSAYLSAG--GISCAAYHAGLNDKAR--SSV 300 (487)
Q Consensus 271 ----------------------------------------------~~~l~~~L~~~--g~~~~~~h~~l~~~~R--~~~ 300 (487)
++++++.|++. +.++..+|++++...+ +++
T Consensus 225 C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~ 304 (505)
T TIGR00595 225 CPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEAL 304 (505)
T ss_pred CCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHH
Confidence 58889999886 6789999999987665 899
Q ss_pred HHHHhcCCCcEEEEcCccccccccCCCcEEEEeCC------CC------CHHHHHHHHhccCCCCCCceEEEEEec
Q 011387 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI------PK------SMEAFYQESGRAGRDQLPSKSLLYYGM 364 (487)
Q Consensus 301 ~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~------p~------s~~~y~Qr~GRagR~g~~g~~i~~~~~ 364 (487)
++.|.+|+.+|||+|++++.|+|+|+|++|+..+. |. ....|+|++||+||.++.|.+++....
T Consensus 305 l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 305 LNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred HHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 99999999999999999999999999999864443 21 357799999999999999999865433
No 79
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2e-30 Score=262.99 Aligned_cols=325 Identities=20% Similarity=0.254 Sum_probs=257.7
Q ss_pred CCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchhhHHHHHhHh---cCCCeEEEeCcH
Q 011387 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPL 87 (487)
Q Consensus 17 ~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~------~dvlv~apTGsGKTl~~~lp~l---~~~~~~lvl~P~ 87 (487)
..+++...++.+.+....+|+ +|..|++++..|... .+-++.+..|||||+++++.++ ..+..+...+||
T Consensus 242 ~~~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPT 320 (677)
T COG1200 242 GIPLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPT 320 (677)
T ss_pred CCCCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccH
Confidence 445666777788887778995 999999999998754 3569999999999999887665 468999999999
Q ss_pred HHHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEE
Q 011387 88 IALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (487)
Q Consensus 88 ~~L~~q~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lV 163 (487)
--|+.|+++.+.+ +|+.+..+.+......+......+.++. ++++++|+-.+ .+.....++.++|
T Consensus 321 EILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~--~~ivVGTHALi---------Qd~V~F~~LgLVI 389 (677)
T COG1200 321 EILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGE--IDIVVGTHALI---------QDKVEFHNLGLVI 389 (677)
T ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCC--CCEEEEcchhh---------hcceeecceeEEE
Confidence 9999999988776 5899999999999999999999999987 77877776544 3445567899999
Q ss_pred EeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCC-CeEEecCCCCCcceEEEEeeCc
Q 011387 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQN-PLVLKSSFNRPNLFYEVRYKDL 241 (487)
Q Consensus 164 iDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~v~~~~~ 241 (487)
|||-|++.- .+-..++.+-+ ...++.|||||-|.... ....+--+ ..+-.-+.-|..+.-.+...+.
T Consensus 390 iDEQHRFGV---------~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i~~~~ 458 (677)
T COG1200 390 IDEQHRFGV---------HQRLALREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVIPHER 458 (677)
T ss_pred EeccccccH---------HHHHHHHHhCCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEecccc
Confidence 999999532 23344666655 57799999999998755 44333333 3333334556666666666554
Q ss_pred hhhHHHHHHHHHHhCCCceEEEEecccchH--------HHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcE
Q 011387 242 LDDAYADLCSVLKANGDTCAIVYCLERTTC--------DELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (487)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~--------~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~v 311 (487)
....++.+.+.+. ++.++.+.|+-.++. +.+++.|+.. +..+..+||.|+.+++.+++++|++|+++|
T Consensus 459 ~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~I 536 (677)
T COG1200 459 RPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDI 536 (677)
T ss_pred HHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcE
Confidence 4455555555444 678899999977654 4566677653 567999999999999999999999999999
Q ss_pred EEEcCccccccccCCCcEEEEeCCCC-CHHHHHHHHhccCCCCCCceEEEEEecch
Q 011387 312 VVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (487)
Q Consensus 312 LVaT~~~~~GiDip~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~~~~~~d 366 (487)
||||.+.+-|||+|+.+++|..+.-. .+.+..|-.||+||.+.++.|++++.+..
T Consensus 537 LVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 537 LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999999999999999999988643 78999999999999999999999998775
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.98 E-value=2.8e-30 Score=279.64 Aligned_cols=315 Identities=17% Similarity=0.159 Sum_probs=214.1
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhHh---cC--CCeEEEeCcHHHHHHHHHHHHH-HcCCceEEec
Q 011387 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL---AK--PGIVLVVSPLIALMENQVIGLK-EKGIAGEFLS 109 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~--~dvlv~apTGsGKTl~~~lp~l---~~--~~~~lvl~P~~~L~~q~~~~l~-~~~~~~~~~~ 109 (487)
.|.|+|..++..++.. ..+++...+|.|||+-+.+.+- .. ..++|||||. +|..||..++. ++++....+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~ 230 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLFD 230 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEc
Confidence 5899999999887654 4788888999999987654432 22 4689999998 89999999985 4777766665
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEeCcccccC-hhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHH
Q 011387 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (487)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t-~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~ 188 (487)
........ ..-.......++++++.+.+.. +..... .....++++||||||++......-...|..+..+.
T Consensus 231 ~~~~~~~~----~~~~~pf~~~~~vI~S~~~l~~~~~~~~~----l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La 302 (956)
T PRK04914 231 EERYAEAQ----HDADNPFETEQLVICSLDFLRRNKQRLEQ----ALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLA 302 (956)
T ss_pred Ccchhhhc----ccccCccccCcEEEEEHHHhhhCHHHHHH----HhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHh
Confidence 44322110 0000111124566666555543 222222 22346899999999999631111223466666665
Q ss_pred HhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeE----------------------------------------------
Q 011387 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLV---------------------------------------------- 222 (487)
Q Consensus 189 ~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~---------------------------------------------- 222 (487)
... ..++++||||...-..+++..+.+-+|..
T Consensus 303 ~~~--~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 303 EVI--PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred hcc--CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 543 35799999986422222222221111111
Q ss_pred ------------------------------------EecCC----CCCcceEEEEee-----------------------
Q 011387 223 ------------------------------------LKSSF----NRPNLFYEVRYK----------------------- 239 (487)
Q Consensus 223 ------------------------------------~~~~~----~~~~~~~~v~~~----------------------- 239 (487)
++..- .-|.-.+.....
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 10000 000000000000
Q ss_pred --------------CchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHH-hCCCceEEecCCCCHHHHHHHHHHH
Q 011387 240 --------------DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSVLDDW 304 (487)
Q Consensus 240 --------------~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~-~~g~~~~~~h~~l~~~~R~~~~~~f 304 (487)
.....++..|.++++...+.++||||+++..+..+++.|. ..|+++..+||+|++.+|.++++.|
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 0012345567777877778899999999999999999994 6799999999999999999999999
Q ss_pred hcC--CCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEe
Q 011387 305 ISS--RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (487)
Q Consensus 305 ~~g--~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~ 363 (487)
+++ ..+|||||+++++|+|++.+++|||||+|++++.|.||+||+||.|+.+.+.+++.
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~ 601 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVP 601 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 974 59999999999999999999999999999999999999999999999998766654
No 81
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=2.8e-29 Score=267.90 Aligned_cols=330 Identities=20% Similarity=0.198 Sum_probs=267.0
Q ss_pred CCcccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHc----C--CCEEEEcCCCchhhHHHHHh---HhcCCCe
Q 011387 10 STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS----G--RDCFCLMPTGGGKSMCYQIP---ALAKPGI 80 (487)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~----~--~dvlv~apTGsGKTl~~~lp---~l~~~~~ 80 (487)
..++..+...++.+.+....+...|+|. -|+-|..||+.+.+ + .|-++|+-.|.|||-+++-+ +...++.
T Consensus 567 A~R~~~~G~af~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQ 645 (1139)
T COG1197 567 AKRQAKKGFAFPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQ 645 (1139)
T ss_pred HHHhhccCCCCCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCe
Confidence 3455666778888999999999999996 79999999999874 3 48899999999999988744 5567999
Q ss_pred EEEeCcHHHHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhc
Q 011387 81 VLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (487)
Q Consensus 81 ~lvl~P~~~L~~q~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~ 156 (487)
+.|++||.-|++|+++.++. +.+....++.-.+..+...+...+..|. ++|+++|+-.+.+ ....
T Consensus 646 VAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~--vDIvIGTHrLL~k---------dv~F 714 (1139)
T COG1197 646 VAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGK--VDIVIGTHRLLSK---------DVKF 714 (1139)
T ss_pred EEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCC--ccEEEechHhhCC---------CcEE
Confidence 99999999999999999887 5788889999999999999999999987 8888888765544 3456
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC-CCCCcceEE
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYE 235 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~ 235 (487)
.+++++||||-|+..= ..=..+++...++-++-|||||-|...+ +...++++-.++.++ .+|-.+.-.
T Consensus 715 kdLGLlIIDEEqRFGV---------k~KEkLK~Lr~~VDvLTLSATPIPRTL~--Msm~GiRdlSvI~TPP~~R~pV~T~ 783 (1139)
T COG1197 715 KDLGLLIIDEEQRFGV---------KHKEKLKELRANVDVLTLSATPIPRTLN--MSLSGIRDLSVIATPPEDRLPVKTF 783 (1139)
T ss_pred ecCCeEEEechhhcCc---------cHHHHHHHHhccCcEEEeeCCCCcchHH--HHHhcchhhhhccCCCCCCcceEEE
Confidence 6799999999999532 2223344444589999999999999888 777788877666544 455555544
Q ss_pred EEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 011387 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (487)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLV 313 (487)
+...+.. -.-+.+...+ ..++++...+|..+..+++++.|++. ..++.+.||.|++.+-++++..|.+|+++|||
T Consensus 784 V~~~d~~-~ireAI~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv 860 (1139)
T COG1197 784 VSEYDDL-LIREAILREL--LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLV 860 (1139)
T ss_pred EecCChH-HHHHHHHHHH--hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEE
Confidence 5444321 1112222222 24667888889999999999999986 45688999999999999999999999999999
Q ss_pred EcCccccccccCCCcEEEEeCCCC-CHHHHHHHHhccCCCCCCceEEEEEecc
Q 011387 314 ATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (487)
Q Consensus 314 aT~~~~~GiDip~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~~~~~~ 365 (487)
||.+.+.|||+|+++.+|.-+... .+.+.+|..||+||.++.+.|+++|.+.
T Consensus 861 ~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 861 CTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred EeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 999999999999999998766543 6899999999999999999999998754
No 82
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=3.9e-30 Score=282.15 Aligned_cols=297 Identities=18% Similarity=0.215 Sum_probs=197.6
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCc----HHHHHHHHHHHHHH-cCCceEEecC
Q 011387 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP----LIALMENQVIGLKE-KGIAGEFLSS 110 (487)
Q Consensus 42 ~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P----~~~L~~q~~~~l~~-~~~~~~~~~~ 110 (487)
.-.++++++.+++.+++.|+||||||. ++|.+.. .+.+++..| .++|+.+..+++.. +|..+..-..
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vr 155 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVR 155 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeec
Confidence 334566666677778889999999999 6785432 234555568 45888888777765 3433222110
Q ss_pred CCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH-HhhhhcCCccEEEEecccc-ccccCCCChHHHHHHHHHH
Q 011387 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLR 188 (487)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l-~~~~~~~~l~~lViDEah~-~~~~g~~f~~~~~~l~~l~ 188 (487)
..... ....+|+ +.|+|.+... .....+..+++|||||||. .++.+ |... .+..+.
T Consensus 156 ---------f~~~~---s~~t~I~------v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~D--fLLg--~Lk~lL 213 (1294)
T PRK11131 156 ---------FNDQV---SDNTMVK------LMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNID--FILG--YLKELL 213 (1294)
T ss_pred ---------Ccccc---CCCCCEE------EEChHHHHHHHhcCCccccCcEEEecCccccccccc--hHHH--HHHHhh
Confidence 00000 1224554 4555544433 3334477899999999995 55533 5432 344455
Q ss_pred HhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCC-CCcceEEEEeeCc---hhhHHHHHHHHHH---hCCCceE
Q 011387 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKDL---LDDAYADLCSVLK---ANGDTCA 261 (487)
Q Consensus 189 ~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~~v~~~~~---~~~~~~~l~~~l~---~~~~~~~ 261 (487)
...|+.++|+||||++.+ .+.+.+ ...+.+...+-. ...++|....... ..+.+..+...+. ..+.+.+
T Consensus 214 ~~rpdlKvILmSATid~e---~fs~~F-~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdI 289 (1294)
T PRK11131 214 PRRPDLKVIITSATIDPE---RFSRHF-NNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDI 289 (1294)
T ss_pred hcCCCceEEEeeCCCCHH---HHHHHc-CCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCE
Confidence 555688999999999764 233333 334443222211 1122222111110 1223334433322 3456779
Q ss_pred EEEecccchHHHHHHHHHhCCCc---eEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCC---
Q 011387 262 IVYCLERTTCDELSAYLSAGGIS---CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI--- 335 (487)
Q Consensus 262 iIf~~s~~~~~~l~~~L~~~g~~---~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~--- 335 (487)
|||++++.+++.+++.|.+.+++ +..+||+|++++|..+++. .|..+|||||+++++|||+|+|++||++|.
T Consensus 290 LVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~ 367 (1294)
T PRK11131 290 LIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARI 367 (1294)
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccc
Confidence 99999999999999999987764 6789999999999999886 578899999999999999999999999873
Q ss_pred ------------C---CCHHHHHHHHhccCCCCCCceEEEEEecchHHH
Q 011387 336 ------------P---KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (487)
Q Consensus 336 ------------p---~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~ 369 (487)
| .|.++|.||+|||||. .+|.|+.+|+.++...
T Consensus 368 ~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 368 SRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred cccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 3 4678999999999999 6999999999887654
No 83
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=8.4e-32 Score=239.62 Aligned_cols=296 Identities=18% Similarity=0.286 Sum_probs=214.4
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCcHHH
Q 011387 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIA 89 (487)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~~ 89 (487)
.|.++-+.+++++++-. .||+.|...|.++||...-|-|+++.|..|.|||.+|.+..|+. .-.++|+|.||+
T Consensus 43 gfrdfllkpellraivd-cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtre 121 (387)
T KOG0329|consen 43 GFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 121 (387)
T ss_pred chhhhhcCHHHHHHHHh-ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHH
Confidence 56778899999999998 69999999999999999999999999999999999999988876 346899999999
Q ss_pred HHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhhcCCccEE
Q 011387 90 LMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNLV 162 (487)
Q Consensus 90 L~~q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~~~~l~~l 162 (487)
|+-|..+++.++ +++....-++............ +...+++|||++..+. +..++++++.+
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~------------~PhivVgTPGrilALvr~k~l~lk~vkhF 189 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN------------CPHIVVGTPGRILALVRNRSLNLKNVKHF 189 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC------------CCeEEEcCcHHHHHHHHhccCchhhccee
Confidence 999998887764 4566666666554433332221 1122678899888873 45667789999
Q ss_pred EEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC-CCC---Ccce-EEE
Q 011387 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNR---PNLF-YEV 236 (487)
Q Consensus 163 ViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~---~~~~-~~v 236 (487)
|+|||+.++++- |.| +.+..+.+.-| ..|++.+|||.+.+++. ...-.+.+|..+... ... ..+. |-+
T Consensus 190 vlDEcdkmle~l-DMr---RDvQEifr~tp~~KQvmmfsatlskeiRp--vC~kFmQdPmEi~vDdE~KLtLHGLqQ~Yv 263 (387)
T KOG0329|consen 190 VLDECDKMLEQL-DMR---RDVQEIFRMTPHEKQVMMFSATLSKEIRP--VCHKFMQDPMEIFVDDEAKLTLHGLQQYYV 263 (387)
T ss_pred ehhhHHHHHHHH-HHH---HHHHHHhhcCcccceeeeeeeecchhhHH--HHHhhhcCchhhhccchhhhhhhhHHHHHH
Confidence 999999998753 233 33344444444 78899999999998876 333345555432211 100 0111 111
Q ss_pred EeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 011387 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (487)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~ 316 (487)
..++ ..+-..+.+++....-..++||+.|... | + | ..+ +|||+
T Consensus 264 kLke--~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l--------------~----------f---~kr-~vat~ 306 (387)
T KOG0329|consen 264 KLKE--NEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVATD 306 (387)
T ss_pred hhhh--hhhhhhhhhhhhhhhhcceeEeeehhhh-------h--------------h----------h---hhh-hHHhh
Confidence 1111 2233334444444444679999887654 1 0 2 123 89999
Q ss_pred ccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchH
Q 011387 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (487)
Q Consensus 317 ~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~ 367 (487)
.+++|+|+..++.|+|||+|.+.++|+||+|||||.|.+|.+++|++..+.
T Consensus 307 lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 307 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred hhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhh
Confidence 999999999999999999999999999999999999999999999987643
No 84
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=3.5e-29 Score=255.44 Aligned_cols=294 Identities=19% Similarity=0.250 Sum_probs=203.4
Q ss_pred CCCcHHHHHHHHHHHc----CCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc---eEEec
Q 011387 37 AQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA---GEFLS 109 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~----~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~---~~~~~ 109 (487)
-.+|++|++++.++.. ++..++++|||+|||.+++..+-.....++||+|+.+|+.|+.+.+...... .....
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~ 114 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYG 114 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccccceec
Confidence 3699999999999998 8899999999999999988777776777999999999999998877764322 12222
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHH
Q 011387 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (487)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~ 189 (487)
++... ..+ ..+.+.|-..+.... .......+.+++||+||||++.... |..+. .
T Consensus 115 ~~~~~------------~~~-~~i~vat~qtl~~~~----~l~~~~~~~~~liI~DE~Hh~~a~~------~~~~~---~ 168 (442)
T COG1061 115 GGEKE------------LEP-AKVTVATVQTLARRQ----LLDEFLGNEFGLIIFDEVHHLPAPS------YRRIL---E 168 (442)
T ss_pred Cceec------------cCC-CcEEEEEhHHHhhhh----hhhhhcccccCEEEEEccccCCcHH------HHHHH---H
Confidence 11100 000 235555444443321 2223333469999999999987622 23333 3
Q ss_pred hCCCCc-EEEEecCCChHHHHHHHHHhcCCCCeEEec--------CCCCCcceEEEEeeCc-------------------
Q 011387 190 YLPDVP-ILALTATAAPKVQKDVMESLCLQNPLVLKS--------SFNRPNLFYEVRYKDL------------------- 241 (487)
Q Consensus 190 ~~~~~~-~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--------~~~~~~~~~~v~~~~~------------------- 241 (487)
.+.... +++||||+.......+........+.++.. .+..|..++.+.....
T Consensus 169 ~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~ 248 (442)
T COG1061 169 LLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLR 248 (442)
T ss_pred hhhcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhh
Confidence 333333 899999987544222222222222333321 2222322222222100
Q ss_pred -----------------hhhHHHHHHHHHHhC-CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHH
Q 011387 242 -----------------LDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 303 (487)
Q Consensus 242 -----------------~~~~~~~l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~ 303 (487)
...+...+...+..+ .+.+++|||.+..+++.++..+...|. +..+.+..+..+|..+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~ 327 (442)
T COG1061 249 ARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILER 327 (442)
T ss_pred hhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHH
Confidence 011222233333333 467899999999999999999998888 8899999999999999999
Q ss_pred HhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCC-CCCCce
Q 011387 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR-DQLPSK 357 (487)
Q Consensus 304 f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR-~g~~g~ 357 (487)
|+.|.+++||++.++.+|+|+|+++++|..+...|...|+||+||.-| ...++.
T Consensus 328 fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 328 FRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred HHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 999999999999999999999999999999999999999999999999 443444
No 85
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=5.1e-28 Score=254.35 Aligned_cols=325 Identities=21% Similarity=0.212 Sum_probs=236.1
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC---CCeEEEeCcHHHHHHHHHHHHHH--
Q 011387 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-- 100 (487)
Q Consensus 26 ~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q~~~~l~~-- 100 (487)
+..+..+.+|+ .+++.|.-..-.+..|+ ++.+.||+|||+++.+|++.. +..+-|++|+-.|+.+.++.+..
T Consensus 69 vrEa~~R~~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 69 AREGAKRVLGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred HHHHHHHHhCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHH
Confidence 44566677786 48889988777777776 999999999999999998754 88899999999999999888765
Q ss_pred --cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH---HhhhhcCCccEEEEeccccccc---
Q 011387 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS--- 172 (487)
Q Consensus 101 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l---~~~~~~~~l~~lViDEah~~~~--- 172 (487)
+|+.+..+.+.....++...+. .+|+|+|..-++-.-..+.+ .+....+.+.+.||||+|.++=
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y~--------~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDea 217 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAYN--------CDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEA 217 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHhc--------CCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccC
Confidence 6999999988877777665543 68888887655432222222 1122245678899999998740
Q ss_pred --------cCCCChHHHHHH-------------------------------------------HH---------------
Q 011387 173 --------WGHDFRPSYRKL-------------------------------------------SS--------------- 186 (487)
Q Consensus 173 --------~g~~f~~~~~~l-------------------------------------------~~--------------- 186 (487)
-.......|..+ ..
T Consensus 218 rtPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~ 297 (796)
T PRK12906 218 RTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTAL 297 (796)
T ss_pred CCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhH
Confidence 000000011000 00
Q ss_pred -------HHHh--C----------------------------------------------C----------------CCc
Q 011387 187 -------LRNY--L----------------------------------------------P----------------DVP 195 (487)
Q Consensus 187 -------l~~~--~----------------------------------------------~----------------~~~ 195 (487)
++.. + | -.+
T Consensus 298 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~k 377 (796)
T PRK12906 298 AHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKK 377 (796)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcch
Confidence 0000 0 0 013
Q ss_pred EEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEe--eCchhhHHHHHHHHHHhC--CCceEEEEecccchH
Q 011387 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTC 271 (487)
Q Consensus 196 ~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~l~~~l~~~--~~~~~iIf~~s~~~~ 271 (487)
+.+||+|+..+ ...+.+..++ .++..+.++|.++..... ......++..+.+.+... .+.|+||||+|+..+
T Consensus 378 l~GmTGTa~~e-~~Ef~~iY~l---~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~s 453 (796)
T PRK12906 378 LSGMTGTAKTE-EEEFREIYNM---EVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESS 453 (796)
T ss_pred hhccCCCCHHH-HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHH
Confidence 56677777433 2333333333 345566677766543321 112256788888888543 789999999999999
Q ss_pred HHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccC---CCc-----EEEEeCCCCCHHHHH
Q 011387 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHFNIPKSMEAFY 343 (487)
Q Consensus 272 ~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip---~v~-----~VI~~~~p~s~~~y~ 343 (487)
+.+++.|.+.|++...+|+++.+.++..+.+.+..|. |+|||+++|||.|++ +|. +||+++.|.|...|.
T Consensus 454 e~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~ 531 (796)
T PRK12906 454 ERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDN 531 (796)
T ss_pred HHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHH
Confidence 9999999999999999999999888887777777666 999999999999995 899 999999999999999
Q ss_pred HHHhccCCCCCCceEEEEEecchH
Q 011387 344 QESGRAGRDQLPSKSLLYYGMDDR 367 (487)
Q Consensus 344 Qr~GRagR~g~~g~~i~~~~~~d~ 367 (487)
|+.||+||.|.+|.+.+|++.+|.
T Consensus 532 Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 532 QLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred HHhhhhccCCCCcceEEEEeccch
Confidence 999999999999999999998854
No 86
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=5.3e-28 Score=248.89 Aligned_cols=323 Identities=22% Similarity=0.267 Sum_probs=223.9
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHh---cCCCeEEEeCcHHHHHHHHHHHHHHcC
Q 011387 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEKG 102 (487)
Q Consensus 26 ~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l---~~~~~~lvl~P~~~L~~q~~~~l~~~~ 102 (487)
++..+...|+|+ +-.+|++||-++..|..|+|.|+|.+|||+++..++. .+..++|+-+|.++|-+|.++.++...
T Consensus 286 lVpe~a~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 286 LVPEMALIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred hchhHHhhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhc
Confidence 344444557875 8899999999999999999999999999999765433 347799999999999999999999853
Q ss_pred CceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH-HhhhhcCCccEEEEeccccccc--cCCCChH
Q 011387 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISS--WGHDFRP 179 (487)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l-~~~~~~~~l~~lViDEah~~~~--~g~~f~~ 179 (487)
-....++++. ..++....+++|.|++-+ .+ ...--.+.+..+|+||+|-+.+ .|.-
T Consensus 365 ~DvgLlTGDv-------------qinPeAsCLIMTTEILRs-----MLYrgadliRDvE~VIFDEVHYiND~eRGvV--- 423 (1248)
T KOG0947|consen 365 GDVGLLTGDV-------------QINPEASCLIMTTEILRS-----MLYRGADLIRDVEFVIFDEVHYINDVERGVV--- 423 (1248)
T ss_pred cccceeecce-------------eeCCCcceEeehHHHHHH-----HHhcccchhhccceEEEeeeeeccccccccc---
Confidence 3444454433 223557888888776633 11 1111234589999999999977 3422
Q ss_pred HHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCC-CeEEecCC-CCCcce--EEEEee---------------
Q 011387 180 SYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQN-PLVLKSSF-NRPNLF--YEVRYK--------------- 239 (487)
Q Consensus 180 ~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~-~~~~~~~~-~~~~~~--~~v~~~--------------- 239 (487)
..++.-.+| .+.+|++|||.++... +..|.|-.. ..+...+. .||--. |-...+
T Consensus 424 ----WEEViIMlP~HV~~IlLSATVPN~~E--FA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~ 497 (1248)
T KOG0947|consen 424 ----WEEVIIMLPRHVNFILLSATVPNTLE--FADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLK 497 (1248)
T ss_pred ----ceeeeeeccccceEEEEeccCCChHH--HHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhh
Confidence 222333445 7899999999887642 344444321 11211111 222100 000000
Q ss_pred ---------------------C---------------------------chh---hHHHHHHHHHHhCCCceEEEEeccc
Q 011387 240 ---------------------D---------------------------LLD---DAYADLCSVLKANGDTCAIVYCLER 268 (487)
Q Consensus 240 ---------------------~---------------------------~~~---~~~~~l~~~l~~~~~~~~iIf~~s~ 268 (487)
. ... ..+-.+...++...--|+||||-|+
T Consensus 498 ~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSk 577 (1248)
T KOG0947|consen 498 GIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSK 577 (1248)
T ss_pred cchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEcc
Confidence 0 000 1255666677766667899999999
Q ss_pred chHHHHHHHHHhCCC---------------------------------------ceEEecCCCCHHHHHHHHHHHhcCCC
Q 011387 269 TTCDELSAYLSAGGI---------------------------------------SCAAYHAGLNDKARSSVLDDWISSRK 309 (487)
Q Consensus 269 ~~~~~l~~~L~~~g~---------------------------------------~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (487)
+.|++.++.|...++ .++.+|||+=+--++-+...|..|-+
T Consensus 578 krCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlV 657 (1248)
T KOG0947|consen 578 KRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLV 657 (1248)
T ss_pred ccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCce
Confidence 999999999975332 46789999999999999999999999
Q ss_pred cEEEEcCccccccccCCCcEEEEeCCCC---------CHHHHHHHHhccCCCCC--CceEEEEEecc--hHHHHHHHHHh
Q 011387 310 QVVVATVAFGMGIDRKDVRLVCHFNIPK---------SMEAFYQESGRAGRDQL--PSKSLLYYGMD--DRRRMEFILSK 376 (487)
Q Consensus 310 ~vLVaT~~~~~GiDip~v~~VI~~~~p~---------s~~~y~Qr~GRagR~g~--~g~~i~~~~~~--d~~~~~~i~~~ 376 (487)
+||+||..|+||||.| .+.||.-++.+ .+-+|.|++|||||.|- .|.++++.... +...++.++-.
T Consensus 658 KVLFATETFAMGVNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G 736 (1248)
T KOG0947|consen 658 KVLFATETFAMGVNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMG 736 (1248)
T ss_pred EEEeehhhhhhhcCCC-ceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcC
Confidence 9999999999999999 45555555443 78899999999999985 46666665443 55666666554
Q ss_pred c
Q 011387 377 N 377 (487)
Q Consensus 377 ~ 377 (487)
.
T Consensus 737 ~ 737 (1248)
T KOG0947|consen 737 G 737 (1248)
T ss_pred C
Confidence 3
No 87
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=1.5e-28 Score=270.61 Aligned_cols=299 Identities=18% Similarity=0.193 Sum_probs=195.5
Q ss_pred HHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCcHHHHHHHHHHHHHH-cCCceEEecCCCCHHH
Q 011387 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQV 116 (487)
Q Consensus 44 ~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~ 116 (487)
.+++.++.+++.+++.|+||||||. ++|.+.. .+.+++.-|.+--+...+.++.+ +|.......+.....+
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~ 150 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFH 150 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCC
Confidence 3466666677788899999999998 5675432 34666777988777766666554 4444322211110000
Q ss_pred HHHHHHHHhcCCCcccEEEeCcccccChhhHHH-HHhhhhcCCccEEEEecccc-ccccCCCChHHHHHHHHHHHhCCCC
Q 011387 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-LKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDV 194 (487)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~-l~~~~~~~~l~~lViDEah~-~~~~g~~f~~~~~~l~~l~~~~~~~ 194 (487)
+- .....++.+ .|+|.+.. +.....+..+++|||||||. .++.+ |.-. .+..+....|+.
T Consensus 151 ------~~--~s~~T~I~~------~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D--~LL~--lLk~il~~rpdL 212 (1283)
T TIGR01967 151 ------DQ--VSSNTLVKL------MTDGILLAETQQDRFLSRYDTIIIDEAHERSLNID--FLLG--YLKQLLPRRPDL 212 (1283)
T ss_pred ------cc--cCCCceeee------ccccHHHHHhhhCcccccCcEEEEcCcchhhccch--hHHH--HHHHHHhhCCCC
Confidence 00 011244544 45554433 33334467799999999995 55532 3322 244455566788
Q ss_pred cEEEEecCCChHHHHHHHHHhcCCCCeEEecCC-CCCcceEEEEeeCc---hhhHHHHHHHHHH---hCCCceEEEEecc
Q 011387 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSF-NRPNLFYEVRYKDL---LDDAYADLCSVLK---ANGDTCAIVYCLE 267 (487)
Q Consensus 195 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~v~~~~~---~~~~~~~l~~~l~---~~~~~~~iIf~~s 267 (487)
++|+||||.+.. .+.+.++ ..+.+...+. ....++|....... ..+....+...+. ....+.+|||+++
T Consensus 213 KlIlmSATld~~---~fa~~F~-~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg 288 (1283)
T TIGR01967 213 KIIITSATIDPE---RFSRHFN-NAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPG 288 (1283)
T ss_pred eEEEEeCCcCHH---HHHHHhc-CCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCC
Confidence 999999999754 3344432 3344332221 11222222111110 1123333333332 2345789999999
Q ss_pred cchHHHHHHHHHhCC---CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCC-------
Q 011387 268 RTTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------- 337 (487)
Q Consensus 268 ~~~~~~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~------- 337 (487)
..+++.+++.|.+.+ ..+..+||+|++++|.++++.+ +..+|||||+++++|||+|+|++||++|+++
T Consensus 289 ~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~ 366 (1283)
T TIGR01967 289 EREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYR 366 (1283)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccc
Confidence 999999999998864 4588999999999999886653 3479999999999999999999999999543
Q ss_pred -----------CHHHHHHHHhccCCCCCCceEEEEEecchHHH
Q 011387 338 -----------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (487)
Q Consensus 338 -----------s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~ 369 (487)
|.++|.||+|||||.| +|.|+.+|+.++...
T Consensus 367 ~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 367 TKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred cCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 6789999999999998 999999999877654
No 88
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=3.5e-28 Score=255.70 Aligned_cols=329 Identities=20% Similarity=0.246 Sum_probs=235.0
Q ss_pred HHcCCCCCcHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHHHhHhcC--------------CCeEEEeCcHHHHHHHHHH
Q 011387 32 WHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--------------PGIVLVVSPLIALMENQVI 96 (487)
Q Consensus 32 ~~fg~~~~~~~Q~~~i~~~l~~-~dvlv~apTGsGKTl~~~lp~l~~--------------~~~~lvl~P~~~L~~q~~~ 96 (487)
..+|..+|.++|..+.++.+.+ .+++++||||+|||-++++-+|+. ..++++++|..+|++.++.
T Consensus 303 aF~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vg 382 (1674)
T KOG0951|consen 303 AFFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVG 382 (1674)
T ss_pred hcccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHH
Confidence 3458889999999999999877 589999999999999999988853 4579999999999999998
Q ss_pred HHHH----cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhh----hhcCCccEEEEeccc
Q 011387 97 GLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGLLNLVAIDEAH 168 (487)
Q Consensus 97 ~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~----~~~~~l~~lViDEah 168 (487)
.+.+ +|+.+...+++........ ...+++++|||. ++.+.+. .-...++++||||.|
T Consensus 383 sfSkRla~~GI~V~ElTgD~~l~~~qi---------eeTqVIV~TPEK------~DiITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 383 SFSKRLAPLGITVLELTGDSQLGKEQI---------EETQVIVTTPEK------WDIITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred HHHhhccccCcEEEEecccccchhhhh---------hcceeEEeccch------hhhhhcccCchhHHHHHHHHhhhhhh
Confidence 6554 7999988887765433211 125677777773 2222111 112236789999999
Q ss_pred cccc-cCCCChHHHHH-HHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEe--cCCCCCcceEEEEeeCch--
Q 011387 169 CISS-WGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYKDLL-- 242 (487)
Q Consensus 169 ~~~~-~g~~f~~~~~~-l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~~v~~~~~~-- 242 (487)
.+-+ .|.-.+....+ .......-.+..++++|||+++- .|+..++....+.++. .++....+.+++.-....
T Consensus 448 LLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy--~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 448 LLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY--EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKP 525 (1674)
T ss_pred hcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCch--hhhHHHhccCcccccccCcccCcCCccceEeccccCCc
Confidence 9843 55432222111 11111223378899999999875 6778877766544433 355555555554432211
Q ss_pred hhHHHHH-----HHHHHhCCCceEEEEecccchHHHHHHHHHh-------------------------------------
Q 011387 243 DDAYADL-----CSVLKANGDTCAIVYCLERTTCDELSAYLSA------------------------------------- 280 (487)
Q Consensus 243 ~~~~~~l-----~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~------------------------------------- 280 (487)
...++.+ .+.++..+..++|||+.+|+++.+.|++++.
T Consensus 526 ~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdL 605 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDL 605 (1674)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHH
Confidence 1223222 2344555678999999999999998888872
Q ss_pred CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEE----EeCC------CCCHHHHHHHHhccC
Q 011387 281 GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFNI------PKSMEAFYQESGRAG 350 (487)
Q Consensus 281 ~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI----~~~~------p~s~~~y~Qr~GRag 350 (487)
..+..+.+|+||+..+|..+.+.|.+|+++|+|+|-.+++|+|+|.-+++| .|+. +.++.+.+|+.||||
T Consensus 606 LpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgrag 685 (1674)
T KOG0951|consen 606 LPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAG 685 (1674)
T ss_pred hhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcC
Confidence 122568999999999999999999999999999999999999999888877 3443 248899999999999
Q ss_pred CCC--CCceEEEEEecchHHHHHHHHHhc
Q 011387 351 RDQ--LPSKSLLYYGMDDRRRMEFILSKN 377 (487)
Q Consensus 351 R~g--~~g~~i~~~~~~d~~~~~~i~~~~ 377 (487)
|.+ ..|.+++.....+..+...++.+.
T Consensus 686 rp~~D~~gegiiit~~se~qyyls~mn~q 714 (1674)
T KOG0951|consen 686 RPQYDTCGEGIIITDHSELQYYLSLMNQQ 714 (1674)
T ss_pred CCccCcCCceeeccCchHhhhhHHhhhhc
Confidence 965 467788887777777766665543
No 89
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.96 E-value=2.8e-29 Score=238.54 Aligned_cols=278 Identities=17% Similarity=0.211 Sum_probs=185.7
Q ss_pred eEEEeCcHHHHHHHHHHHHHHcCCce-------EEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh
Q 011387 80 IVLVVSPLIALMENQVIGLKEKGIAG-------EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152 (487)
Q Consensus 80 ~~lvl~P~~~L~~q~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~ 152 (487)
.++|+-|.++|++|..+.++++.... ..+.++.... ... ..+--+|.+++.||+++..+..
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r---~Q~---------~ql~~g~~ivvGtpgRl~~~is 355 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKR---TQC---------KQLKDGTHIVVGTPGRLLQPIS 355 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhH---HHH---------HHhhcCceeeecCchhhhhhhh
Confidence 48999999999999999777642211 1111111111 111 1222334557788887766643
Q ss_pred --hhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC-------CCcEEEEecCCChHHHHHHHHHh-cCCCCeE
Q 011387 153 --IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-------DVPILALTATAAPKVQKDVMESL-CLQNPLV 222 (487)
Q Consensus 153 --~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-------~~~~i~lSAT~~~~~~~~i~~~l-~~~~~~~ 222 (487)
...+...+++|+|||+.++.-|++ ..+.++...+| ..+.+++|||...-....+.+.+ ..+..+-
T Consensus 356 ~g~~~lt~crFlvlDead~lL~qgy~-----d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVd 430 (725)
T KOG0349|consen 356 KGLVTLTHCRFLVLDEADLLLGQGYD-----DKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVD 430 (725)
T ss_pred ccceeeeeeEEEEecchhhhhhcccH-----HHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEe
Confidence 233455788999999999987765 45555655555 35788999997642222222111 1110000
Q ss_pred Ee-----------------cCC-----------------CCCcceEEEEeeCchhhHHH-----HHHHHHHhCCCceEEE
Q 011387 223 LK-----------------SSF-----------------NRPNLFYEVRYKDLLDDAYA-----DLCSVLKANGDTCAIV 263 (487)
Q Consensus 223 ~~-----------------~~~-----------------~~~~~~~~v~~~~~~~~~~~-----~l~~~l~~~~~~~~iI 263 (487)
++ .+. .+.|+...-...+....... .-+..++++.-.+.||
T Consensus 431 LkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaii 510 (725)
T KOG0349|consen 431 LKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAII 510 (725)
T ss_pred cccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEE
Confidence 00 000 01111111111111111111 1123345567788999
Q ss_pred EecccchHHHHHHHHHhCC---CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHH
Q 011387 264 YCLERTTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSME 340 (487)
Q Consensus 264 f~~s~~~~~~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~ 340 (487)
||.|+.+|+.|.+++.+.| +.+..+||+..+.+|.+.++.|+.+.++.||||+++++|+|+..+-++|+..+|....
T Consensus 511 fcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~ 590 (725)
T KOG0349|consen 511 FCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKT 590 (725)
T ss_pred EEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccc
Confidence 9999999999999999865 5899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCceEEEEEecchHHHHHHHH
Q 011387 341 AFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (487)
Q Consensus 341 ~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~ 374 (487)
+|+||+||+||..+.|.++.++.....+.+...-
T Consensus 591 nyvhrigrvgraermglaislvat~~ekvwyh~c 624 (725)
T KOG0349|consen 591 NYVHRIGRVGRAERMGLAISLVATVPEKVWYHWC 624 (725)
T ss_pred hhhhhhhccchhhhcceeEEEeeccchheeehhh
Confidence 9999999999999999999987765444444433
No 90
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=1.4e-26 Score=249.60 Aligned_cols=308 Identities=15% Similarity=0.116 Sum_probs=191.7
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---C--CCeEEEeCcHHHHHHHHHHHHHH-----cC-
Q 011387 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLKE-----KG- 102 (487)
Q Consensus 34 fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~--~~~~lvl~P~~~L~~q~~~~l~~-----~~- 102 (487)
|+..+|||+|+.+......+.-+++.||||+|||.+++..+.. . ...+++..||++++++.++++.+ ++
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 4445799999988654444567899999999999998776542 2 36899999999999999999874 22
Q ss_pred CceEEecCCCCHHHHHHH-HH----------------HHhcCCCcccEEEeCcccccChhhHH-HHH--hhhhcCC----
Q 011387 103 IAGEFLSSTQTMQVKTKI-YE----------------DLDSGKPSLRLLYVTPELTATPGFMS-KLK--KIHSRGL---- 158 (487)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~~il~~tpe~v~t~~~~~-~l~--~~~~~~~---- 158 (487)
......++.......... .. ..... .-+-....|..|+|...+. ... +....+.
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~--~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQ--SNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhh--hhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 234444443322111000 00 00000 0011122444555543211 111 0111111
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHhC--CCCcEEEEecCCChHHHHHHHHHhcCCC--------CeEE-----
Q 011387 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQN--------PLVL----- 223 (487)
Q Consensus 159 l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~--~~~~~i~lSAT~~~~~~~~i~~~l~~~~--------~~~~----- 223 (487)
-++|||||+|.+..+. . ..|..+.+.. .+.++|+||||++...++.+.+.++... |.+.
T Consensus 440 ~svvIiDEVHAyD~ym----~--~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~ 513 (878)
T PRK09694 440 RSVLIVDEVHAYDAYM----Y--GLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVN 513 (878)
T ss_pred cCeEEEechhhCCHHH----H--HHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccc
Confidence 2479999999874321 1 1222222221 3678999999999988887776543221 1110
Q ss_pred -----ecCCC----CCcceEEEEee--Cc---hhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCC---CceE
Q 011387 224 -----KSSFN----RPNLFYEVRYK--DL---LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---ISCA 286 (487)
Q Consensus 224 -----~~~~~----~~~~~~~v~~~--~~---~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g---~~~~ 286 (487)
..... .......+... .. ....++.+.+.+ ..+++++|||||++.++.+++.|++.+ ..+.
T Consensus 514 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~ 591 (878)
T PRK09694 514 GAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDID 591 (878)
T ss_pred cceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEE
Confidence 00000 00111112111 10 011222222222 356789999999999999999999865 5799
Q ss_pred EecCCCCHHHHH----HHHHHH-hcCC---CcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCC
Q 011387 287 AYHAGLNDKARS----SVLDDW-ISSR---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (487)
Q Consensus 287 ~~h~~l~~~~R~----~~~~~f-~~g~---~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 354 (487)
.+||.++..+|. ++++.| ++|+ ..|||||+++++|+|+ +++++|....| ++.++||+||+||.++
T Consensus 592 llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 592 LFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999999994 567778 5665 4799999999999999 68999988877 8899999999999875
No 91
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=7.2e-26 Score=239.15 Aligned_cols=323 Identities=21% Similarity=0.200 Sum_probs=235.8
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH---
Q 011387 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (487)
Q Consensus 27 ~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~--- 100 (487)
..+.++.+|. .+++.|.-..-.+..|+ +..|+||+|||+++.+|++. .+..+-|++|+..|+.|..+.+..
T Consensus 71 rEa~~R~lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~ 147 (830)
T PRK12904 71 REASKRVLGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYE 147 (830)
T ss_pred HHHHHHHhCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHh
Confidence 3455566786 47888988777776775 99999999999999999953 366688999999999999988776
Q ss_pred -cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH---HhhhhcCCccEEEEeccccccc----
Q 011387 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS---- 172 (487)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l---~~~~~~~~l~~lViDEah~~~~---- 172 (487)
+|+.+..+.++....++...+. .+|+|+||.-++-.-..+.+ ......+.+.++||||||.++=
T Consensus 148 ~LGlsv~~i~~~~~~~er~~~y~--------~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeAr 219 (830)
T PRK12904 148 FLGLSVGVILSGMSPEERREAYA--------ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEAR 219 (830)
T ss_pred hcCCeEEEEcCCCCHHHHHHhcC--------CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCC
Confidence 5899999988888777655432 67888888766322111111 1112356688999999999840
Q ss_pred -------cCCCChHHHHHHH------------------------------------------------------HHHHh-
Q 011387 173 -------WGHDFRPSYRKLS------------------------------------------------------SLRNY- 190 (487)
Q Consensus 173 -------~g~~f~~~~~~l~------------------------------------------------------~l~~~- 190 (487)
-...-...|..+. .++..
T Consensus 220 tpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~ 299 (830)
T PRK12904 220 TPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHE 299 (830)
T ss_pred CceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHH
Confidence 0000000010000 01100
Q ss_pred -C----------------------------------------------C----------------CCcEEEEecCCChHH
Q 011387 191 -L----------------------------------------------P----------------DVPILALTATAAPKV 207 (487)
Q Consensus 191 -~----------------------------------------------~----------------~~~~i~lSAT~~~~~ 207 (487)
+ + -..+.+||+|+..+
T Consensus 300 l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te- 378 (830)
T PRK12904 300 LFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTE- 378 (830)
T ss_pred HHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHH-
Confidence 0 0 01356788887543
Q ss_pred HHHHHHHhcCCCCeEEecCCCCCcceEEE---EeeCchhhHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhCC
Q 011387 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG 282 (487)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g 282 (487)
...+.+..++ .++..+.++|.++... .+.+ ...++..+.+.+.. ..+.|+||||+|++.++.+++.|.+.|
T Consensus 379 ~~E~~~iY~l---~vv~IPtnkp~~r~d~~d~i~~t-~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~g 454 (830)
T PRK12904 379 AEEFREIYNL---DVVVIPTNRPMIRIDHPDLIYKT-EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAG 454 (830)
T ss_pred HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEEC-HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 2333443333 3555667777776542 2222 25678888888866 578899999999999999999999999
Q ss_pred CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCC------------------------------------
Q 011387 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD------------------------------------ 326 (487)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~------------------------------------ 326 (487)
++...+||. +.+|+..+..|..+...|+|||+++|||+|++=
T Consensus 455 i~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 532 (830)
T PRK12904 455 IPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLE 532 (830)
T ss_pred CceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHH
Confidence 999999995 778999999999999999999999999999873
Q ss_pred --CcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchH
Q 011387 327 --VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (487)
Q Consensus 327 --v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~ 367 (487)
-=+||....|.|..---|-.||+||.|.||.+..|++-+|.
T Consensus 533 ~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 533 AGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred cCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 24799999999999999999999999999999999998765
No 92
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=8.4e-26 Score=238.82 Aligned_cols=318 Identities=20% Similarity=0.200 Sum_probs=227.1
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC---CCeEEEeCcHHHHHHHHHHHHHH----
Q 011387 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE---- 100 (487)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q~~~~l~~---- 100 (487)
.+.++.+|. .+++.|.-.--.+..|+ ++.|+||+|||++|.+|++.. +..++|++|+++|+.|..+.+..
T Consensus 73 Ea~~R~lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~ 149 (896)
T PRK13104 73 EVSLRTLGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEF 149 (896)
T ss_pred HHHHHHcCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 444556675 36777777666666665 999999999999999999843 66799999999999999998877
Q ss_pred cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhh-------hhcCCccEEEEeccccccc-
Q 011387 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-------HSRGLLNLVAIDEAHCISS- 172 (487)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~-------~~~~~l~~lViDEah~~~~- 172 (487)
+|+.+..+.++.....+...+ ..+|+|+||..++- +.+.+. ...+.+.++||||||.++=
T Consensus 150 lGLtv~~i~gg~~~~~r~~~y--------~~dIvygT~grlgf----DyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLID 217 (896)
T PRK13104 150 LGLTVGVIYPDMSHKEKQEAY--------KADIVYGTNNEYGF----DYLRDNMAFSLTDKVQRELNFAIVDEVDSILID 217 (896)
T ss_pred cCceEEEEeCCCCHHHHHHHh--------CCCEEEECChhhhH----HHHhcCCccchHhhhccccceEEeccHhhhhhh
Confidence 488888888877766554333 26777777765421 122211 1125789999999999840
Q ss_pred ------------------------------cC------CCCh------------HHHHHHHHH-----------------
Q 011387 173 ------------------------------WG------HDFR------------PSYRKLSSL----------------- 187 (487)
Q Consensus 173 ------------------------------~g------~~f~------------~~~~~l~~l----------------- 187 (487)
.+ .+|. .....+..+
T Consensus 218 eArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~ 297 (896)
T PRK13104 218 EARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHAS 297 (896)
T ss_pred ccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCch
Confidence 00 0110 000001110
Q ss_pred ------------HHh--C------------------------C-------------------------------------
Q 011387 188 ------------RNY--L------------------------P------------------------------------- 192 (487)
Q Consensus 188 ------------~~~--~------------------------~------------------------------------- 192 (487)
+.. | +
T Consensus 298 ~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr 377 (896)
T PRK13104 298 NIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFR 377 (896)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHH
Confidence 000 0 0
Q ss_pred -CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEE---eeCchhhHHHHHHHHHHh--CCCceEEEEec
Q 011387 193 -DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR---YKDLLDDAYADLCSVLKA--NGDTCAIVYCL 266 (487)
Q Consensus 193 -~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~ 266 (487)
-..+-+||+|+.... ..+.+.. +-.++..+.++|.++.... +.+ ...++..+.+.++. ..+.|+||||+
T Consensus 378 ~Y~kLsGMTGTa~te~-~Ef~~iY---~l~Vv~IPtnkp~~R~d~~d~v~~t-~~~k~~av~~~i~~~~~~g~PVLVgt~ 452 (896)
T PRK13104 378 MYNKLSGMTGTADTEA-YEFQQIY---NLEVVVIPTNRSMIRKDEADLVYLT-QADKFQAIIEDVRECGVRKQPVLVGTV 452 (896)
T ss_pred hcchhccCCCCChhHH-HHHHHHh---CCCEEECCCCCCcceecCCCeEEcC-HHHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 012456666664432 2333333 3335566677777664322 222 35677777777643 37899999999
Q ss_pred ccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccC---------------------
Q 011387 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--------------------- 325 (487)
Q Consensus 267 s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip--------------------- 325 (487)
|++.++.+++.|.+.|++...+|+++.+.++..+.+.|+.|. |+|||+++|||+|+.
T Consensus 453 Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~ 530 (896)
T PRK13104 453 SIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEK 530 (896)
T ss_pred cHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHH
Confidence 999999999999999999999999999999999999999995 999999999999986
Q ss_pred -----------------CCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchH
Q 011387 326 -----------------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (487)
Q Consensus 326 -----------------~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~ 367 (487)
+--+||-...+.|..-=-|-.||+||.|.||.+..|++-+|.
T Consensus 531 ~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 531 EAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 123688888899999999999999999999999999998765
No 93
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=4.3e-27 Score=236.81 Aligned_cols=318 Identities=19% Similarity=0.237 Sum_probs=218.6
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHh---HhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecC
Q 011387 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (487)
Q Consensus 34 fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~ 110 (487)
|.| .+-|+|..+|..+-++..|+|.|.|.+|||.++..+ +|..+.++|+-+|.++|.+|.+++|..-.-.+...++
T Consensus 126 YPF-~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTG 204 (1041)
T KOG0948|consen 126 YPF-TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTG 204 (1041)
T ss_pred CCc-ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeec
Confidence 455 488999999999999999999999999999986543 3455899999999999999999998874334444443
Q ss_pred CCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccc--cCCCChHHHHHHHHHH
Q 011387 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS--WGHDFRPSYRKLSSLR 188 (487)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~--~g~~f~~~~~~l~~l~ 188 (487)
+. +.++++..+++|.|++-+- .....--.+.+.++|+||.|-+-+ .|--.+ .. +.
T Consensus 205 DV-------------TInP~ASCLVMTTEILRsM----LYRGSEvmrEVaWVIFDEIHYMRDkERGVVWE---ET---II 261 (1041)
T KOG0948|consen 205 DV-------------TINPDASCLVMTTEILRSM----LYRGSEVMREVAWVIFDEIHYMRDKERGVVWE---ET---II 261 (1041)
T ss_pred ce-------------eeCCCCceeeeHHHHHHHH----HhccchHhheeeeEEeeeehhccccccceeee---ee---EE
Confidence 32 2345577777777765321 112222355689999999999966 221111 00 11
Q ss_pred HhCC-CCcEEEEecCCChHH-HHHHHHHhcCCCCeEEecCCCCCcce-----------EEEE-eeC-chhhH--------
Q 011387 189 NYLP-DVPILALTATAAPKV-QKDVMESLCLQNPLVLKSSFNRPNLF-----------YEVR-YKD-LLDDA-------- 245 (487)
Q Consensus 189 ~~~~-~~~~i~lSAT~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~~~-----------~~v~-~~~-~~~~~-------- 245 (487)
.+| +++.+++|||.+++. ..++...+.-+...++-+.+....+. |.++ .+. ..++.
T Consensus 262 -llP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l 340 (1041)
T KOG0948|consen 262 -LLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVL 340 (1041)
T ss_pred -eccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHh
Confidence 234 788999999998764 34556666666666655544332222 1111 110 11111
Q ss_pred ------------------------------HHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCC------------
Q 011387 246 ------------------------------YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI------------ 283 (487)
Q Consensus 246 ------------------------------~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~------------ 283 (487)
+-.+...+-.....++|||+-|+++||.+|-.+.++..
T Consensus 341 ~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~i 420 (1041)
T KOG0948|consen 341 RKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETI 420 (1041)
T ss_pred hccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHH
Confidence 11233333344567899999999999999987765322
Q ss_pred ---------------------------ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCC
Q 011387 284 ---------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336 (487)
Q Consensus 284 ---------------------------~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p 336 (487)
.+..+|||+-+--++-+.-.|..|-+++|+||..|++|+|.|.-++| ....-
T Consensus 421 F~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVv-FT~~r 499 (1041)
T KOG0948|consen 421 FNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVV-FTAVR 499 (1041)
T ss_pred HHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEE-Eeecc
Confidence 46789999999999999999999999999999999999999955444 44332
Q ss_pred C---------CHHHHHHHHhccCCCCCC--ceEEEEEecc-hHHHHHHHHHhc
Q 011387 337 K---------SMEAFYQESGRAGRDQLP--SKSLLYYGMD-DRRRMEFILSKN 377 (487)
Q Consensus 337 ~---------s~~~y~Qr~GRagR~g~~--g~~i~~~~~~-d~~~~~~i~~~~ 377 (487)
+ |.-+|+|++|||||.|.. |.|+++++.. +....+.+++..
T Consensus 500 KfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~ 552 (1041)
T KOG0948|consen 500 KFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGS 552 (1041)
T ss_pred ccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCC
Confidence 2 678899999999999965 5666666543 455555555543
No 94
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=6.9e-26 Score=242.01 Aligned_cols=321 Identities=24% Similarity=0.236 Sum_probs=213.9
Q ss_pred HHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHh---HhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEe
Q 011387 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (487)
Q Consensus 32 ~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~ 108 (487)
..+||+ +-++|++++..+..|.+|+|+||||+|||++.... ++..+.++++.+|.+||.+|.+.++.......
T Consensus 114 ~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv--- 189 (1041)
T COG4581 114 REYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDV--- 189 (1041)
T ss_pred HhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhh---
Confidence 347885 99999999999999999999999999999986543 45668889999999999999999988743222
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH-HhhhhcCCccEEEEeccccccccCCCChHHHHHHHHH
Q 011387 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (487)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l-~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l 187 (487)
.....+.....+.++++.+++.|.|++.+ .+ ...-....+..+|+||+|.+.+.. |. .-....
T Consensus 190 ------~~~vGL~TGDv~IN~~A~clvMTTEILRn-----Mlyrg~~~~~~i~~ViFDEvHyi~D~e---RG--~VWEE~ 253 (1041)
T COG4581 190 ------ADMVGLMTGDVSINPDAPCLVMTTEILRN-----MLYRGSESLRDIEWVVFDEVHYIGDRE---RG--VVWEEV 253 (1041)
T ss_pred ------hhhccceecceeeCCCCceEEeeHHHHHH-----HhccCcccccccceEEEEeeeeccccc---cc--hhHHHH
Confidence 00011111222334556677666665532 11 223345668999999999998743 22 233345
Q ss_pred HHhCC-CCcEEEEecCCChHHHHHHHHHhcC--CCCeEEecCCCCCc-ceEEEEee-------Cchh-------------
Q 011387 188 RNYLP-DVPILALTATAAPKVQKDVMESLCL--QNPLVLKSSFNRPN-LFYEVRYK-------DLLD------------- 243 (487)
Q Consensus 188 ~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~--~~~~~~~~~~~~~~-~~~~v~~~-------~~~~------------- 243 (487)
.-.+| ++++++||||.++..+- ..|++. ..+..+.....||. +.+.+... +...
T Consensus 254 Ii~lP~~v~~v~LSATv~N~~EF--~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~ 331 (1041)
T COG4581 254 IILLPDHVRFVFLSATVPNAEEF--AEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRS 331 (1041)
T ss_pred HHhcCCCCcEEEEeCCCCCHHHH--HHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhh
Confidence 55566 67999999999876432 344432 33333333333332 21111110 0000
Q ss_pred ---------------------------------hHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhC---------
Q 011387 244 ---------------------------------DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--------- 281 (487)
Q Consensus 244 ---------------------------------~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~--------- 281 (487)
...-.+...+......++|+|+-|++.|+..+..+...
T Consensus 332 l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e 411 (1041)
T COG4581 332 LSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKE 411 (1041)
T ss_pred hhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHH
Confidence 00012333444445678999999999998888776521
Q ss_pred -------------------CC-------------ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcE
Q 011387 282 -------------------GI-------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329 (487)
Q Consensus 282 -------------------g~-------------~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~ 329 (487)
++ .++.+|+||=+..|..+.+.|..|-++|++||.++++|+|.|. +.
T Consensus 412 ~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa-rt 490 (1041)
T COG4581 412 RAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA-RT 490 (1041)
T ss_pred HHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc-cc
Confidence 11 2468999999999999999999999999999999999999995 44
Q ss_pred EEEeCCC---------CCHHHHHHHHhccCCCCCC--ceEEEEEecc--hHHHHHHHHH
Q 011387 330 VCHFNIP---------KSMEAFYQESGRAGRDQLP--SKSLLYYGMD--DRRRMEFILS 375 (487)
Q Consensus 330 VI~~~~p---------~s~~~y~Qr~GRagR~g~~--g~~i~~~~~~--d~~~~~~i~~ 375 (487)
|+.+.+. -+..+|.|..|||||.|.. |.+++...+. +......+..
T Consensus 491 vv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~ 549 (1041)
T COG4581 491 VVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLAS 549 (1041)
T ss_pred eeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhc
Confidence 4444433 3899999999999999854 5666653332 3444444443
No 95
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=5.8e-26 Score=235.55 Aligned_cols=339 Identities=19% Similarity=0.273 Sum_probs=228.8
Q ss_pred HHHHHHHHcCCCCCcHHHHHHH--HHHHcCCCEEEEcCCCchhhHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHH
Q 011387 26 LVKLLRWHFGHAQFRDKQLDAI--QAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLK 99 (487)
Q Consensus 26 ~~~~l~~~fg~~~~~~~Q~~~i--~~~l~~~dvlv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~ 99 (487)
....-....|..+++.+|.+++ +.++++++.+..+||++|||++..+-++. ....++.+.|..+.+......+.
T Consensus 211 ~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~ 290 (1008)
T KOG0950|consen 211 VSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALS 290 (1008)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhh
Confidence 3333334579999999999998 67889999999999999999999876654 47889999999999999888888
Q ss_pred HcCCceEE----ecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCC
Q 011387 100 EKGIAGEF----LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (487)
Q Consensus 100 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~ 175 (487)
.+.....+ ..+...... ......+.++|.|.-.+ ..+.+.+.-....+++|||||-|.+.+-|.
T Consensus 291 ~~~~~~G~~ve~y~g~~~p~~----------~~k~~sv~i~tiEkans--lin~lie~g~~~~~g~vvVdElhmi~d~~r 358 (1008)
T KOG0950|consen 291 PFSIDLGFPVEEYAGRFPPEK----------RRKRESVAIATIEKANS--LINSLIEQGRLDFLGMVVVDELHMIGDKGR 358 (1008)
T ss_pred hhccccCCcchhhcccCCCCC----------cccceeeeeeehHhhHh--HHHHHHhcCCccccCcEEEeeeeeeecccc
Confidence 75443332 221111111 11224566666665433 445555555666789999999999988654
Q ss_pred CChHHHHHHHHHHHhCC--CCcEEEEecCCChHHHHHHHHHhcC----C--CCeEEecCCCCCcceEEEEeeCchhhHH-
Q 011387 176 DFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCL----Q--NPLVLKSSFNRPNLFYEVRYKDLLDDAY- 246 (487)
Q Consensus 176 ~f~~~~~~l~~l~~~~~--~~~~i~lSAT~~~~~~~~i~~~l~~----~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 246 (487)
+..-+ ..+.++.-... .+++|+||||.++. .++..++.- . .|+.+......-...|....... -..+
T Consensus 359 g~~lE-~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~-lr~ia 434 (1008)
T KOG0950|consen 359 GAILE-LLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKV-LREIA 434 (1008)
T ss_pred chHHH-HHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccchhhHH-HHHhh
Confidence 42211 12222222222 35699999999865 233333321 1 12222221111222222210000 0000
Q ss_pred ------------HHHHHHHHhC--CCceEEEEecccchHHHHHHHHHhC-------------------------------
Q 011387 247 ------------ADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG------------------------------- 281 (487)
Q Consensus 247 ------------~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~------------------------------- 281 (487)
+.+..+..+. .+.++||||++++.|+.+|..+...
T Consensus 435 ~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld 514 (1008)
T KOG0950|consen 435 NLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILD 514 (1008)
T ss_pred hhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccc
Confidence 1122222111 3456999999999999988655420
Q ss_pred -------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCC----CCCHHHHHHHHhccC
Q 011387 282 -------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI----PKSMEAFYQESGRAG 350 (487)
Q Consensus 282 -------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~----p~s~~~y~Qr~GRag 350 (487)
...++++|+|++.++|+.+...|+.|.+.|++||+.++.|+|.|..+++|-.-. ..+.-+|.|++||||
T Consensus 515 ~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAG 594 (1008)
T KOG0950|consen 515 PVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAG 594 (1008)
T ss_pred hHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhh
Confidence 115689999999999999999999999999999999999999999888885443 247889999999999
Q ss_pred CCC--CCceEEEEEecchHHHHHHHHHhcccC
Q 011387 351 RDQ--LPSKSLLYYGMDDRRRMEFILSKNQSK 380 (487)
Q Consensus 351 R~g--~~g~~i~~~~~~d~~~~~~i~~~~~~~ 380 (487)
|.| ..|.+++++...|.+.+..++......
T Consensus 595 R~gidT~GdsiLI~k~~e~~~~~~lv~~~~~~ 626 (1008)
T KOG0950|consen 595 RTGIDTLGDSILIIKSSEKKRVRELVNSPLKP 626 (1008)
T ss_pred hcccccCcceEEEeeccchhHHHHHHhccccc
Confidence 997 568899999999999988888765543
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=1.1e-24 Score=241.16 Aligned_cols=308 Identities=20% Similarity=0.217 Sum_probs=186.2
Q ss_pred CCcHHHHHHHHHHH----cC-CCEEEEcCCCchhhHHHHH--hHhc---CCCeEEEeCcHHHHHHHHHHHHHHcCCceE-
Q 011387 38 QFRDKQLDAIQAVL----SG-RDCFCLMPTGGGKSMCYQI--PALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGE- 106 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l----~~-~dvlv~apTGsGKTl~~~l--p~l~---~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~- 106 (487)
.+|++|.++|.++. .| +..++++|||||||.+.+. -.+. ..+++|+|+|+.+|+.|..+.+...+....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~ 492 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQ 492 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccccc
Confidence 58999999998775 23 6799999999999976432 2222 246899999999999999999998754322
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH-HhhhhcCCccEEEEeccccccc------cC----C
Q 011387 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISS------WG----H 175 (487)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l-~~~~~~~~l~~lViDEah~~~~------~g----~ 175 (487)
......... ...... .....+++++|...+....+...- ......+.+++|||||||+... .| .
T Consensus 493 ~~~~i~~i~---~L~~~~--~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 493 TFASIYDIK---GLEDKF--PEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFR 567 (1123)
T ss_pred chhhhhchh---hhhhhc--ccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccc
Confidence 111000000 001111 112345655554433211000000 0112356688999999999531 00 0
Q ss_pred CChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHH------------HHhcCC---CCeEEecCCCCCcceEEEE---
Q 011387 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM------------ESLCLQ---NPLVLKSSFNRPNLFYEVR--- 237 (487)
Q Consensus 176 ~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~------------~~l~~~---~~~~~~~~~~~~~~~~~v~--- 237 (487)
++...|.....+...| +...++|||||.......+- ..-.+. .|..+...+....+.+.-.
T Consensus 568 ~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~ 646 (1123)
T PRK11448 568 DQLDYVSKYRRVLDYF-DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEV 646 (1123)
T ss_pred hhhhHHHHHHHHHhhc-CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchh
Confidence 1112234444455544 56789999999754322110 000000 1122211111111110000
Q ss_pred --------ee--Cchh---------------------hHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhC-----
Q 011387 238 --------YK--DLLD---------------------DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----- 281 (487)
Q Consensus 238 --------~~--~~~~---------------------~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~----- 281 (487)
.. ...+ .....+.+.+....++++||||.++++|+.+++.|.+.
T Consensus 647 ~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~ 726 (1123)
T PRK11448 647 EVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKY 726 (1123)
T ss_pred hhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhc
Confidence 00 0000 00122333343345579999999999999999888753
Q ss_pred -CC---ceEEecCCCCHHHHHHHHHHHhcCCC-cEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCC
Q 011387 282 -GI---SCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (487)
Q Consensus 282 -g~---~~~~~h~~l~~~~R~~~~~~f~~g~~-~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g 353 (487)
+. .+..+||+.+ ++.+++++|+++.. .|+|+++++.+|+|+|.+.+||.+..++|...|+|++||+.|-.
T Consensus 727 ~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 727 GQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred CCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 22 3556888875 46789999999887 68999999999999999999999999999999999999999953
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.1e-23 Score=222.15 Aligned_cols=323 Identities=20% Similarity=0.163 Sum_probs=228.4
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC---CCeEEEeCcHHHHHHHHHHHHHH---
Q 011387 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE--- 100 (487)
Q Consensus 27 ~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q~~~~l~~--- 100 (487)
..+.++.+|. .+++.|.-.--.+.+|+ ++.|+||.|||+++.+|++.. +..+.||+|+..|+.+..+.+..
T Consensus 72 rEaa~R~lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~ 148 (908)
T PRK13107 72 REASKRVFEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFE 148 (908)
T ss_pred HHHHHHHhCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 3445566776 37778876655555555 999999999999999998754 66799999999999998888766
Q ss_pred -cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH---hhhhcCCccEEEEeccccccccC--
Q 011387 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISSWG-- 174 (487)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~---~~~~~~~l~~lViDEah~~~~~g-- 174 (487)
+|+.+..+.++.....+...+ ..+|+|+||.-++-.-....+. .....+.+.++||||||.++-..
T Consensus 149 ~lGlsv~~i~~~~~~~~r~~~Y--------~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEAr 220 (908)
T PRK13107 149 FLGLTVGINVAGLGQQEKKAAY--------NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEAR 220 (908)
T ss_pred hcCCeEEEecCCCCHHHHHhcC--------CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCC
Confidence 689988887776654332222 2789999888663221111110 11123568899999999874100
Q ss_pred ---------CCChHHHH-------------------------------------------HHHHHH--------------
Q 011387 175 ---------HDFRPSYR-------------------------------------------KLSSLR-------------- 188 (487)
Q Consensus 175 ---------~~f~~~~~-------------------------------------------~l~~l~-------------- 188 (487)
..-...|. .+..+.
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~ 300 (908)
T PRK13107 221 TPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYS 300 (908)
T ss_pred CceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccC
Confidence 00000000 011100
Q ss_pred ---------------Hh--C------------------------C-----------------------------------
Q 011387 189 ---------------NY--L------------------------P----------------------------------- 192 (487)
Q Consensus 189 ---------------~~--~------------------------~----------------------------------- 192 (487)
.. | +
T Consensus 301 ~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qnf 380 (908)
T PRK13107 301 AANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNY 380 (908)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHH
Confidence 00 0 0
Q ss_pred ---CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEE---eeCchhhHHHHHHHHHHh--CCCceEEEE
Q 011387 193 ---DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR---YKDLLDDAYADLCSVLKA--NGDTCAIVY 264 (487)
Q Consensus 193 ---~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~l~~~l~~--~~~~~~iIf 264 (487)
-..+.+||+|+.... ..+.+..+ -.++..+.++|.++.... +.. ...++..+.+.++. ..+.|+|||
T Consensus 381 Fr~Y~kL~GMTGTa~te~-~Ef~~iY~---l~Vv~IPTnkp~~R~d~~d~iy~t-~~~K~~Aii~ei~~~~~~GrpVLV~ 455 (908)
T PRK13107 381 FRQYEKLAGMTGTADTEA-FEFQHIYG---LDTVVVPTNRPMVRKDMADLVYLT-ADEKYQAIIKDIKDCRERGQPVLVG 455 (908)
T ss_pred HHhhhHhhcccCCChHHH-HHHHHHhC---CCEEECCCCCCccceeCCCcEEeC-HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 002456677765432 22333333 335566677776654332 222 25677777776654 378899999
Q ss_pred ecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccC-------------------
Q 011387 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK------------------- 325 (487)
Q Consensus 265 ~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip------------------- 325 (487)
|+|.+.++.++..|.+.|++...+|+++++.++..+.+.|+.|. |+|||+++|||+|+.
T Consensus 456 t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~ 533 (908)
T PRK13107 456 TVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQ 533 (908)
T ss_pred eCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHH
Confidence 99999999999999999999999999999999999999999998 999999999999986
Q ss_pred ------------------CCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchH
Q 011387 326 ------------------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (487)
Q Consensus 326 ------------------~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~ 367 (487)
+-=+||-...+.|..-=-|..|||||.|.||.+..|++.+|.
T Consensus 534 ~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 534 KAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 224789899999999999999999999999999999998875
No 98
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=6e-24 Score=222.78 Aligned_cols=325 Identities=20% Similarity=0.226 Sum_probs=241.8
Q ss_pred CCCcHHHHHHHHHHHcC----CCEEEEcCCCchhhHHHHH---hHhcCCCeEEEeCcHHHHHHHHHHHHHH-cCCceEEe
Q 011387 37 AQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFL 108 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~----~dvlv~apTGsGKTl~~~l---p~l~~~~~~lvl~P~~~L~~q~~~~l~~-~~~~~~~~ 108 (487)
..+.+.|+.+++.+.+. +..++.+.||||||-+|+- ..|..++.+|+++|-++|..|..++++. +|.+...+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vl 276 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVL 276 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhh
Confidence 36788999999998755 6789999999999999963 3466789999999999999999999998 79999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCC-CChHHHHHHHHH
Q 011387 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRPSYRKLSSL 187 (487)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~-~f~~~~~~l~~l 187 (487)
+++.+..++...|.....+. .+++++|-.-+.+|- .+|++|||||-|.-+--.. ..+..-+.+..+
T Consensus 277 HS~Ls~~er~~~W~~~~~G~--~~vVIGtRSAlF~Pf-----------~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~ 343 (730)
T COG1198 277 HSGLSPGERYRVWRRARRGE--ARVVIGTRSALFLPF-----------KNLGLIIVDEEHDSSYKQEDGPRYHARDVAVL 343 (730)
T ss_pred cccCChHHHHHHHHHHhcCC--ceEEEEechhhcCch-----------hhccEEEEeccccccccCCcCCCcCHHHHHHH
Confidence 99999999999999999887 899999998888873 4799999999998753221 123334678888
Q ss_pred HHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCC---CCcceEEEEeeCchhh---HHHHHHHHHHhC--CCc
Q 011387 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRYKDLLDD---AYADLCSVLKAN--GDT 259 (487)
Q Consensus 188 ~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~---~~~~l~~~l~~~--~~~ 259 (487)
+.+..++|+|+-|||++-+....... +.-....+..-.. .|++.+.-........ .-..|.+.+++. .++
T Consensus 344 Ra~~~~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~ge 421 (730)
T COG1198 344 RAKKENAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGE 421 (730)
T ss_pred HHHHhCCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCC
Confidence 88888999999999998776654422 1111112222222 2333322111111111 224455555443 577
Q ss_pred eEEEEeccc------------------------------------------------------------chHHHHHHHHH
Q 011387 260 CAIVYCLER------------------------------------------------------------TTCDELSAYLS 279 (487)
Q Consensus 260 ~~iIf~~s~------------------------------------------------------------~~~~~l~~~L~ 279 (487)
++|+|.|.| ..+|++++.|.
T Consensus 422 Q~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~ 501 (730)
T COG1198 422 QVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELK 501 (730)
T ss_pred eEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHH
Confidence 889998888 22388888888
Q ss_pred hC--CCceEEecCCCCHH--HHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCC------------CHHHHH
Q 011387 280 AG--GISCAAYHAGLNDK--ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAFY 343 (487)
Q Consensus 280 ~~--g~~~~~~h~~l~~~--~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~------------s~~~y~ 343 (487)
+. +.++..+.++.+.. .-+..++.|.+|+.+|||.|++++.|.|+|+++.|...+... ....+.
T Consensus 502 ~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~ 581 (730)
T COG1198 502 RLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLM 581 (730)
T ss_pred HHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHH
Confidence 75 56777777776543 346789999999999999999999999999999987666432 456679
Q ss_pred HHHhccCCCCCCceEEEEEecchHHHHHHHHHh
Q 011387 344 QESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (487)
Q Consensus 344 Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~ 376 (487)
|-+|||||.+++|.+++-....|-..++.+..+
T Consensus 582 QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~ 614 (730)
T COG1198 582 QVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRG 614 (730)
T ss_pred HHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhc
Confidence 999999999999999887665555555555443
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=3e-23 Score=192.84 Aligned_cols=296 Identities=19% Similarity=0.244 Sum_probs=199.5
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEcCCCchhhHH-HH--HhHhcCCCeEEEeCcHHHHHHHHHHHHHHc--CCceEEe
Q 011387 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMC-YQ--IPALAKPGIVLVVSPLIALMENQVIGLKEK--GIAGEFL 108 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l----~~~dvlv~apTGsGKTl~-~~--lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~--~~~~~~~ 108 (487)
++++.|+.+-+.++ +.++.+|.|-||+|||-. |+ -.++..++++.+.+|....+.+.+.+|+.- +.....+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 79999999887765 458999999999999953 33 345677999999999999999999999872 3555555
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHH
Q 011387 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (487)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~ 188 (487)
.++..... -+|-+|+|...+.++.+. ++++||||+|..---. | ...+..+..
T Consensus 177 yg~S~~~f-------------------r~plvVaTtHQLlrFk~a-----FD~liIDEVDAFP~~~-d-~~L~~Av~~-- 228 (441)
T COG4098 177 YGDSDSYF-------------------RAPLVVATTHQLLRFKQA-----FDLLIIDEVDAFPFSD-D-QSLQYAVKK-- 228 (441)
T ss_pred ecCCchhc-------------------cccEEEEehHHHHHHHhh-----ccEEEEeccccccccC-C-HHHHHHHHH--
Confidence 55432221 134466665544444443 8899999999863211 1 111122222
Q ss_pred HhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceE-EEEeeCchhhHH------HHHHHHHHhC--CCc
Q 011387 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY-EVRYKDLLDDAY------ADLCSVLKAN--GDT 259 (487)
Q Consensus 189 ~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~------~~l~~~l~~~--~~~ 259 (487)
..-++-..+.+|||++....+++... -.....+..-+.+..+.. .........+++ ..|..+++.+ .+.
T Consensus 229 ark~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~ 306 (441)
T COG4098 229 ARKKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGR 306 (441)
T ss_pred hhcccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCC
Confidence 22236679999999998877765441 111122222222222110 111111111222 2466677654 568
Q ss_pred eEEEEecccchHHHHHHHHHhC-C-CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCC-
Q 011387 260 CAIVYCLERTTCDELSAYLSAG-G-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP- 336 (487)
Q Consensus 260 ~~iIf~~s~~~~~~l~~~L~~~-g-~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p- 336 (487)
+++||+++.+..+++++.|++. + ..++..|+. ...|.+..+.|++|+..+||+|.++++|+-+|+|++.+.-.--
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~ 384 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHR 384 (441)
T ss_pred cEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcc
Confidence 9999999999999999999653 2 345678874 4678899999999999999999999999999999997754322
Q ss_pred -CCHHHHHHHHhccCCCC-CCceEEEEEecc
Q 011387 337 -KSMEAFYQESGRAGRDQ-LPSKSLLYYGMD 365 (487)
Q Consensus 337 -~s~~~y~Qr~GRagR~g-~~g~~i~~~~~~ 365 (487)
-+-+..+|.+||+||.- ++.--++|+...
T Consensus 385 vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 385 VFTESALVQIAGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred cccHHHHHHHhhhccCCCcCCCCcEEEEecc
Confidence 57899999999999954 343345555544
No 100
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.92 E-value=3.7e-23 Score=225.21 Aligned_cols=307 Identities=18% Similarity=0.172 Sum_probs=208.7
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEcCCCchhhHHHH--HhHhc----CCCeEEEeCcHHHHHHHHHHHHHHcC--Cce
Q 011387 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQ--IPALA----KPGIVLVVSPLIALMENQVIGLKEKG--IAG 105 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l----~~~dvlv~apTGsGKTl~~~--lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~~~--~~~ 105 (487)
+++++|.+.+..+. .|.+.|+.-.+|.|||+..+ +..+. ..+.+|||+|. +++.+|.+++.+.. +.+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 68999999998775 56788888899999998543 22222 14679999997 66788999998853 333
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHH
Q 011387 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (487)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~ 185 (487)
..+.+. ...+........ ....++++++|.+++.. .........+++||+||||.+.... ..+.
T Consensus 248 ~~~~G~--~~eR~~~~~~~~-~~~~~dVvITSYe~l~~------e~~~L~k~~W~~VIvDEAHrIKN~~-------Skls 311 (1033)
T PLN03142 248 VKFHGN--PEERAHQREELL-VAGKFDVCVTSFEMAIK------EKTALKRFSWRYIIIDEAHRIKNEN-------SLLS 311 (1033)
T ss_pred EEEeCC--HHHHHHHHHHHh-cccCCCcceecHHHHHH------HHHHhccCCCCEEEEcCccccCCHH-------HHHH
Confidence 333332 222222222111 11236666666655432 2223333458899999999986532 3344
Q ss_pred HHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC---------------------------------------
Q 011387 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--------------------------------------- 226 (487)
Q Consensus 186 ~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--------------------------------------- 226 (487)
.....+.....+++||||-.+...+++..+.+-.|..+...
T Consensus 312 kalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~ 391 (1033)
T PLN03142 312 KTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVE 391 (1033)
T ss_pred HHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 44455555667999999988777777776655444322110
Q ss_pred CCCCcceEEEEeeCch--------------------------------------------------------------hh
Q 011387 227 FNRPNLFYEVRYKDLL--------------------------------------------------------------DD 244 (487)
Q Consensus 227 ~~~~~~~~~v~~~~~~--------------------------------------------------------------~~ 244 (487)
...|.....+...... ..
T Consensus 392 ~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~Sg 471 (1033)
T PLN03142 392 KGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSG 471 (1033)
T ss_pred hhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhh
Confidence 0001111111111000 01
Q ss_pred HHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC---CCcEEEEcCccc
Q 011387 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQVVVATVAFG 319 (487)
Q Consensus 245 ~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g---~~~vLVaT~~~~ 319 (487)
++..|..++.. ..+.++|||+........|.+.|...|+....+||+++.++|..+++.|... ...+|++|.+.|
T Consensus 472 Kl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGG 551 (1033)
T PLN03142 472 KMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG 551 (1033)
T ss_pred HHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccc
Confidence 12222222222 2467899999999999999999999999999999999999999999999753 346799999999
Q ss_pred cccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEE
Q 011387 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (487)
Q Consensus 320 ~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 361 (487)
.|||+..+++||+||++|++....|++||+.|.|+...+.+|
T Consensus 552 lGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~Vy 593 (1033)
T PLN03142 552 LGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 593 (1033)
T ss_pred cCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEE
Confidence 999999999999999999999999999999999988776554
No 101
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.4e-22 Score=211.51 Aligned_cols=291 Identities=20% Similarity=0.279 Sum_probs=205.7
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHh---cCCCeEEEeCcHHHHHHHHHHHHHHc
Q 011387 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEK 101 (487)
Q Consensus 25 ~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l---~~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (487)
+..+.+++..|+ .|+..|+--...++.|+++-++||||.|||.--++.++ .+++++++|+||..|+.|.++.++++
T Consensus 70 ~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~ 148 (1187)
T COG1110 70 EFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKF 148 (1187)
T ss_pred HHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHH
Confidence 445556666687 69999999999999999999999999999976555544 34789999999999999999999986
Q ss_pred C-----CceEE-ecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCC
Q 011387 102 G-----IAGEF-LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (487)
Q Consensus 102 ~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~ 175 (487)
. ..... +++.....++....+.+.++. ++++ ++|..|+.+-...+..-+++++++|++|.++.-+.
T Consensus 149 ~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gd--fdIl------itTs~FL~k~~e~L~~~kFdfifVDDVDA~Lkask 220 (1187)
T COG1110 149 AEDAGSLDVLVVYHSALPTKEKEEALERIESGD--FDIL------ITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASK 220 (1187)
T ss_pred HhhcCCcceeeeeccccchHHHHHHHHHHhcCC--ccEE------EEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccc
Confidence 4 22222 667778888888889998887 6664 45555555444444445799999999998854221
Q ss_pred C---------ChHH-H---HHHHHHHH-------------------------hCCCCcEEEEecCCChHH-HHHHHHH-h
Q 011387 176 D---------FRPS-Y---RKLSSLRN-------------------------YLPDVPILALTATAAPKV-QKDVMES-L 215 (487)
Q Consensus 176 ~---------f~~~-~---~~l~~l~~-------------------------~~~~~~~i~lSAT~~~~~-~~~i~~~-l 215 (487)
+ |... + ..+..++. ....-.++..|||..+.- +..+... +
T Consensus 221 NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl 300 (1187)
T COG1110 221 NVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL 300 (1187)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh
Confidence 1 1110 0 01111111 112345889999987653 3333333 3
Q ss_pred cCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecc---cchHHHHHHHHHhCCCceEEecCCC
Q 011387 216 CLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE---RTTCDELSAYLSAGGISCAAYHAGL 292 (487)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s---~~~~~~l~~~L~~~g~~~~~~h~~l 292 (487)
+..-. .......|+.-..... .....+.++++..+. -+|||++. ++.++++++.|..+|+++..+|++-
T Consensus 301 gFevG---~~~~~LRNIvD~y~~~----~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~ 372 (1187)
T COG1110 301 GFEVG---SGGEGLRNIVDIYVES----ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEK 372 (1187)
T ss_pred CCccC---ccchhhhheeeeeccC----ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccc
Confidence 32211 1112223443322222 445566677776655 48999999 8999999999999999999999943
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEc----CccccccccCC-CcEEEEeCCCC
Q 011387 293 NDKARSSVLDDWISSRKQVVVAT----VAFGMGIDRKD-VRLVCHFNIPK 337 (487)
Q Consensus 293 ~~~~R~~~~~~f~~g~~~vLVaT----~~~~~GiDip~-v~~VI~~~~p~ 337 (487)
.+.++.|..|++++||+. .++-+|||+|. ++++|.++.|+
T Consensus 373 -----~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 373 -----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred -----hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 678999999999999995 47899999995 89999999993
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=5.5e-23 Score=222.06 Aligned_cols=318 Identities=20% Similarity=0.165 Sum_probs=198.3
Q ss_pred CcHHHHHHHHHHHcC---C-CEEEEcCCCchhhHHHHHhHhc-------CCCeEEEeCcHHHHHHHHHHHHHHcCCceEE
Q 011387 39 FRDKQLDAIQAVLSG---R-DCFCLMPTGGGKSMCYQIPALA-------KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (487)
Q Consensus 39 ~~~~Q~~~i~~~l~~---~-dvlv~apTGsGKTl~~~lp~l~-------~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~ 107 (487)
.++.|..++..+... . .+++.||||+|||.+.+.++.. ...+++++.|++++++++.++++...-....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 478999999888754 4 6789999999999999887753 2678999999999999999999873221111
Q ss_pred ----ecCCCCHHHHHHHHH---HHhcCCCcccEEEeCcccccChhhHHHH-Hhh-----hhcCCccEEEEeccccccccC
Q 011387 108 ----LSSTQTMQVKTKIYE---DLDSGKPSLRLLYVTPELTATPGFMSKL-KKI-----HSRGLLNLVAIDEAHCISSWG 174 (487)
Q Consensus 108 ----~~~~~~~~~~~~~~~---~~~~~~~~~~il~~tpe~v~t~~~~~~l-~~~-----~~~~~l~~lViDEah~~~~~g 174 (487)
.++............ ............+. +..+.++...... ... ...-..+++|+||+|.+.+..
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLL-ALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceec-cccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 122221111100000 00000001111111 1122222111110 000 000114679999999987753
Q ss_pred CCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC----CCCCcceEEEEeeCchhhHH-HHH
Q 011387 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FNRPNLFYEVRYKDLLDDAY-ADL 249 (487)
Q Consensus 175 ~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~-~~l 249 (487)
. -.....+..+... -+.+++++|||+++...+.+....+-........+ .+.+.+... ......+.. ..+
T Consensus 355 -~-~~~l~~~i~~l~~-~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~~~~~~ 429 (733)
T COG1203 355 -M-LAALLALLEALAE-AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRK--ERVDVEDGPQEEL 429 (733)
T ss_pred -h-HHHHHHHHHHHHh-CCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccc--cchhhhhhhhHhh
Confidence 1 1111222222222 28999999999999998888887765544333222 122221111 111101110 112
Q ss_pred HHHH--HhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHh----cCCCcEEEEcCccccccc
Q 011387 250 CSVL--KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI----SSRKQVVVATVAFGMGID 323 (487)
Q Consensus 250 ~~~l--~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~----~g~~~vLVaT~~~~~GiD 323 (487)
...+ ....+.+++|.|||++.|.++++.|++.+..+..+||.+...+|.+.++.+. .+...|+|||++.+.|+|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 2222 1236789999999999999999999998888999999999999998877554 577899999999999999
Q ss_pred cCCCcEEEEeCCCCCHHHHHHHHhccCCCC--CCceEEEEEecc
Q 011387 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQ--LPSKSLLYYGMD 365 (487)
Q Consensus 324 ip~v~~VI~~~~p~s~~~y~Qr~GRagR~g--~~g~~i~~~~~~ 365 (487)
+. .+++| .-+..+++.+||+||++|.| ..|..+++-...
T Consensus 510 id-fd~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 510 ID-FDVLI--TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred cc-cCeee--ecCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 84 66665 33566999999999999999 566677665433
No 103
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=1.4e-21 Score=206.83 Aligned_cols=129 Identities=22% Similarity=0.337 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccc
Q 011387 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (487)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~G 321 (487)
..+..|.+.++. ..+.++||||+|++.++.+++.|.+.|+++..+||++++.+|.++++.|+.|++.|||||+.+++|
T Consensus 426 ~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 426 GQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred chHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 445566666554 356789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEeC-----CCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHH
Q 011387 322 IDRKDVRLVCHFN-----IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (487)
Q Consensus 322 iDip~v~~VI~~~-----~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i 373 (487)
+|+|++++||+++ .|.+..+|+||+|||||. ..|.+++|++..+......+
T Consensus 506 fDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 506 LDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred eeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 9999999999998 799999999999999998 58999999887765544433
No 104
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=9.7e-23 Score=216.74 Aligned_cols=300 Identities=19% Similarity=0.219 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc------CCCeEEEeCcHHHHHHHHHHHHHH-cCCc----eEEec
Q 011387 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-KGIA----GEFLS 109 (487)
Q Consensus 41 ~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~------~~~~~lvl~P~~~L~~q~~~~l~~-~~~~----~~~~~ 109 (487)
....+.+.++.+++-+++.+|||+|||. ++|... .++.+.+.-|.|--+....+++.. +|.+ +.+..
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i 130 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTT--QLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI 130 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE
Confidence 3455667777788889999999999997 445432 256788888999666666666554 3332 22211
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHH-HHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHH
Q 011387 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS-KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (487)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~-~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~ 188 (487)
. +++. ..+..++- +.|.|.+. .+.....+..++++||||||.-+-. .||. +.-+..+.
T Consensus 131 R----------fe~~--~s~~Trik------~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~-tDil--Lgllk~~~ 189 (845)
T COG1643 131 R----------FESK--VSPRTRIK------VMTDGILLREIQNDPLLSGYSVVIIDEAHERSLN-TDIL--LGLLKDLL 189 (845)
T ss_pred E----------eecc--CCCCceeE------EeccHHHHHHHhhCcccccCCEEEEcchhhhhHH-HHHH--HHHHHHHH
Confidence 0 0000 11224454 44555433 3455666788999999999985421 1111 12233434
Q ss_pred HhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEec-CCCCCcceEEEEe-eCc-hhhHHHHHHHHHHhCCCceEEEE
Q 011387 189 NYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRY-KDL-LDDAYADLCSVLKANGDTCAIVY 264 (487)
Q Consensus 189 ~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~v~~-~~~-~~~~~~~l~~~l~~~~~~~~iIf 264 (487)
...+ +.++|.||||...+... ++++ ..|++... -..+-.++|.-.. .+. ..+.+..........+.+.+|||
T Consensus 190 ~~rr~DLKiIimSATld~~rfs---~~f~-~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvF 265 (845)
T COG1643 190 ARRRDDLKLIIMSATLDAERFS---AYFG-NAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVF 265 (845)
T ss_pred hhcCCCceEEEEecccCHHHHH---HHcC-CCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEE
Confidence 4445 68999999999876433 3332 23433222 2223333332111 111 22233333333334467789999
Q ss_pred ecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCC---
Q 011387 265 CLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK--- 337 (487)
Q Consensus 265 ~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~--- 337 (487)
.+...+.+.+++.|.+ ....+.++||.|+.+++.++++.-..|+.+|++||++++.+|-+|+|++||.-+.-+
T Consensus 266 LpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~ 345 (845)
T COG1643 266 LPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKR 345 (845)
T ss_pred CCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccc
Confidence 9999999999999997 347789999999999999988877777777999999999999999999999777543
Q ss_pred ---------------CHHHHHHHHhccCCCCCCceEEEEEecchHH
Q 011387 338 ---------------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (487)
Q Consensus 338 ---------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~ 368 (487)
|-.+.-||.|||||.+ +|.|+-+|+.++..
T Consensus 346 y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 346 YDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred cccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 7788999999999986 99999999986654
No 105
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.5e-21 Score=206.35 Aligned_cols=121 Identities=19% Similarity=0.179 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHhC--CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC-CcEEEEcCcccc
Q 011387 244 DAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGM 320 (487)
Q Consensus 244 ~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~vLVaT~~~~~ 320 (487)
.++..+.+.+... .+.|+||-|.|.+..+.++..|.+.|++...+++.-...+-.-+-+ .|+ ..|.|||+++||
T Consensus 552 ~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~---AG~~g~VTIATNmAGR 628 (970)
T PRK12899 552 EKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAG---AGKLGAVTVATNMAGR 628 (970)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHh---cCCCCcEEEeeccccC
Confidence 4555555554432 6789999999999999999999999999888888744443333322 243 579999999999
Q ss_pred ccccCC--------CcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchH
Q 011387 321 GIDRKD--------VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (487)
Q Consensus 321 GiDip~--------v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~ 367 (487)
|-|+.- --+||....|.|..---|..||+||.|.+|.+..|++-+|.
T Consensus 629 GTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 629 GTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred CcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchH
Confidence 999752 24799999999999999999999999999999999998865
No 106
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=7.6e-22 Score=209.08 Aligned_cols=124 Identities=23% Similarity=0.267 Sum_probs=112.4
Q ss_pred hhHHHHHHHHHHhC--CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcccc
Q 011387 243 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (487)
Q Consensus 243 ~~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~ 320 (487)
..++..+.+.+... .+.|+||||+|++.++.++..|.+.|++...+|+ .+.+|+..+..|..+...|+|||+++||
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 46788888888543 7889999999999999999999999999999997 6789999999999999999999999999
Q ss_pred ccccC---CCc-----EEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHH
Q 011387 321 GIDRK---DVR-----LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (487)
Q Consensus 321 GiDip---~v~-----~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~ 368 (487)
|+|++ .|. +||++..|.|...|.|+.||+||.|.+|.+++|++.+|.-
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999 554 4599999999999999999999999999999999987653
No 107
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.89 E-value=4.1e-22 Score=183.79 Aligned_cols=182 Identities=21% Similarity=0.258 Sum_probs=135.0
Q ss_pred CCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc--------CCCeEEEeCcHH
Q 011387 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------KPGIVLVVSPLI 88 (487)
Q Consensus 17 ~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~--------~~~~~lvl~P~~ 88 (487)
|..+++++.+.+.|.+ +|++.|+++|.++++.+++|+++++.+|||+|||++|++|++. .+++++|++|++
T Consensus 1 ~~~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCH
Confidence 5678899999999998 7999999999999999999999999999999999999999873 245899999999
Q ss_pred HHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH-HhhhhcCCccEEE
Q 011387 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVA 163 (487)
Q Consensus 89 ~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l-~~~~~~~~l~~lV 163 (487)
+|+.|+.+.++.+ ++....+.++.......... . ...+++++||+.+.. .+ ........++++|
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~iiv~T~~~l~~-----~l~~~~~~~~~l~~lI 148 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---K---RGPHIVVATPGRLLD-----LLERGKLDLSKVKYLV 148 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---c---CCCCEEEEChHHHHH-----HHHcCCCChhhCCEEE
Confidence 9999999888775 55666666665544332221 1 235676666654322 11 1123455689999
Q ss_pred EeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHh
Q 011387 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESL 215 (487)
Q Consensus 164 iDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l 215 (487)
+||+|.+.+.+ +...+. .+.+.++ +.+++++|||+++.....+...+
T Consensus 149 vDE~h~~~~~~--~~~~~~---~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~ 196 (203)
T cd00268 149 LDEADRMLDMG--FEDQIR---EILKLLPKDRQTLLFSATMPKEVRDLARKFL 196 (203)
T ss_pred EeChHHhhccC--hHHHHH---HHHHhCCcccEEEEEeccCCHHHHHHHHHHC
Confidence 99999988655 443333 3444444 78999999999987766444433
No 108
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.89 E-value=3e-22 Score=201.77 Aligned_cols=299 Identities=19% Similarity=0.223 Sum_probs=204.0
Q ss_pred HHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc------CCCeEEEeCcHHHHHHHHHHHHHH-----cCCceEEecCCC
Q 011387 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-----KGIAGEFLSSTQ 112 (487)
Q Consensus 44 ~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~------~~~~~lvl~P~~~L~~q~~~~l~~-----~~~~~~~~~~~~ 112 (487)
.+.+..+-+++-++|++.||||||. ++|-.. ..+.+.+.-|.|--+...+++... +|..+..-..
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKST--QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IR-- 132 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKST--QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIR-- 132 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEE--
Confidence 3466667778888999999999997 566543 356677888998666666655443 2333322110
Q ss_pred CHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC
Q 011387 113 TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192 (487)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~ 192 (487)
.++. .....++.|.|..++ +..+.....+...++||+||||.-+-.. .-.+.-|+++.++.+
T Consensus 133 --------Fed~--ts~~TrikymTDG~L-----LRE~l~Dp~LskYsvIIlDEAHERsl~T---DiLlGlLKki~~~R~ 194 (674)
T KOG0922|consen 133 --------FEDS--TSKDTRIKYMTDGML-----LREILKDPLLSKYSVIILDEAHERSLHT---DILLGLLKKILKKRP 194 (674)
T ss_pred --------eccc--CCCceeEEEecchHH-----HHHHhcCCccccccEEEEechhhhhhHH---HHHHHHHHHHHhcCC
Confidence 0111 112467777776544 3344445556778999999999753210 011123555666667
Q ss_pred CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCC-CCcceEEEEe-eCchhhHHHHHHHHHHhCCCceEEEEecccch
Q 011387 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRY-KDLLDDAYADLCSVLKANGDTCAIVYCLERTT 270 (487)
Q Consensus 193 ~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~~v~~-~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~ 270 (487)
+..++++|||+..+.....+. ..+++...+-. .-.++|.-.. .+..+..+..+.++....+.+-+|||....++
T Consensus 195 ~LklIimSATlda~kfS~yF~----~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeE 270 (674)
T KOG0922|consen 195 DLKLIIMSATLDAEKFSEYFN----NAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEE 270 (674)
T ss_pred CceEEEEeeeecHHHHHHHhc----CCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHH
Confidence 889999999998765443333 23443333222 2222332211 22223444445555555666779999999999
Q ss_pred HHHHHHHHHhC----CC----ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCC-----
Q 011387 271 CDELSAYLSAG----GI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK----- 337 (487)
Q Consensus 271 ~~~l~~~L~~~----g~----~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~----- 337 (487)
.+.+++.|.+. +- -+..+||.|+.+++.++++.--.|..+|++||++++..|-++++++||.-++.+
T Consensus 271 Ie~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~ 350 (674)
T KOG0922|consen 271 IEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYN 350 (674)
T ss_pred HHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeec
Confidence 99999988864 11 246899999999999999888889999999999999999999999999766543
Q ss_pred -------------CHHHHHHHHhccCCCCCCceEEEEEecchHHH
Q 011387 338 -------------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (487)
Q Consensus 338 -------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~ 369 (487)
|..+-.||.|||||.| +|.|+-+|+.++...
T Consensus 351 p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 351 PRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDK 394 (674)
T ss_pred cccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhh
Confidence 8889999999999996 999999999887744
No 109
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=4.2e-20 Score=190.86 Aligned_cols=323 Identities=19% Similarity=0.199 Sum_probs=229.1
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH---
Q 011387 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (487)
Q Consensus 27 ~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~--- 100 (487)
..+..+.+|+ .+++.|.-..-.++.|+ ++.+.||.|||++..+|+.. .+..+.|++|+-.|+.+.++.+..
T Consensus 68 REa~~R~lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~ 144 (764)
T PRK12326 68 REAAERTLGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYE 144 (764)
T ss_pred HHHHHHHcCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 3455567786 48899999998988886 88999999999999999875 378899999999999999988765
Q ss_pred -cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH---hhhhcCCccEEEEeccccccc----
Q 011387 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS---- 172 (487)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~---~~~~~~~l~~lViDEah~~~~---- 172 (487)
+|+.+..+.+.....++...+. .+|.|+|..-++-.-..+.+. .....+.+.+.||||+|.++=
T Consensus 145 ~LGLsvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeAr 216 (764)
T PRK12326 145 ALGLTVGWITEESTPEERRAAYA--------CDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEAL 216 (764)
T ss_pred hcCCEEEEECCCCCHHHHHHHHc--------CCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheecccc
Confidence 6899999988888777666554 788999877554332222331 122345588999999998740
Q ss_pred ---------c-----------------CCCCh----------------------------------HHHHHHH-HHHHh-
Q 011387 173 ---------W-----------------GHDFR----------------------------------PSYRKLS-SLRNY- 190 (487)
Q Consensus 173 ---------~-----------------g~~f~----------------------------------~~~~~l~-~l~~~- 190 (487)
. +.+|. ..+..+. .++..
T Consensus 217 tPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~ 296 (764)
T PRK12326 217 VPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHA 296 (764)
T ss_pred CceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHH
Confidence 0 00010 0000000 11111
Q ss_pred -C----------------------------------------------C----------------CCcEEEEecCCChHH
Q 011387 191 -L----------------------------------------------P----------------DVPILALTATAAPKV 207 (487)
Q Consensus 191 -~----------------------------------------------~----------------~~~~i~lSAT~~~~~ 207 (487)
+ + -..+.+||+|+....
T Consensus 297 l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~ 376 (764)
T PRK12326 297 LLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAG 376 (764)
T ss_pred HHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHH
Confidence 0 0 013678888875443
Q ss_pred HHHHHHHhcCCCCeEEecCCCCCcceEEE---EeeCchhhHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhCC
Q 011387 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG 282 (487)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g 282 (487)
..+.+..++. ++..+.++|.++... .+.. ...++..+.+.+.. ..+.|+||.|.|.+.++.+++.|.+.|
T Consensus 377 -~Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~iy~t-~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~g 451 (764)
T PRK12326 377 -EQLRQFYDLG---VSVIPPNKPNIREDEADRVYAT-AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAG 451 (764)
T ss_pred -HHHHHHhCCc---EEECCCCCCceeecCCCceEeC-HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCC
Confidence 3444444443 555666777765432 2222 25677777766654 378999999999999999999999999
Q ss_pred CceEEecCCCCHHHHHHHHHHHhcC-CCcEEEEcCccccccccC---------------CCcEEEEeCCCCCHHHHHHHH
Q 011387 283 ISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRK---------------DVRLVCHFNIPKSMEAFYQES 346 (487)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g-~~~vLVaT~~~~~GiDip---------------~v~~VI~~~~p~s~~~y~Qr~ 346 (487)
++...+++.-...+-.-+.+ .| ...|.|||+++|||-||. +-=+||-...+.|..---|-.
T Consensus 452 I~h~vLNAk~~~~EA~IIa~---AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLr 528 (764)
T PRK12326 452 VPAVVLNAKNDAEEARIIAE---AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLR 528 (764)
T ss_pred CcceeeccCchHhHHHHHHh---cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHh
Confidence 99999998755444322222 24 357999999999999986 234799999999999999999
Q ss_pred hccCCCCCCceEEEEEecchHH
Q 011387 347 GRAGRDQLPSKSLLYYGMDDRR 368 (487)
Q Consensus 347 GRagR~g~~g~~i~~~~~~d~~ 368 (487)
||+||.|.||.+..|++-+|.-
T Consensus 529 GRaGRQGDpGss~f~lSleDdl 550 (764)
T PRK12326 529 GRAGRQGDPGSSVFFVSLEDDV 550 (764)
T ss_pred cccccCCCCCceeEEEEcchhH
Confidence 9999999999999999988753
No 110
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.88 E-value=4.3e-20 Score=196.95 Aligned_cols=119 Identities=24% Similarity=0.369 Sum_probs=107.5
Q ss_pred HHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcccccc
Q 011387 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (487)
Q Consensus 245 ~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~Gi 322 (487)
.+..+.+.++. ..+.++||||+|++.++.+++.|.+.|+++..+||++++.+|.++++.|+.|++.|+|||+.+++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 34455555543 2567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEeCC-----CCCHHHHHHHHhccCCCCCCceEEEEEec
Q 011387 323 DRKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (487)
Q Consensus 323 Dip~v~~VI~~~~-----p~s~~~y~Qr~GRagR~g~~g~~i~~~~~ 364 (487)
|+|++++||+++. |.+.++|+||+||+||. ..|.+++|++.
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~ 556 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecC
Confidence 9999999999885 78999999999999996 68999999984
No 111
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.85 E-value=2.2e-20 Score=166.89 Aligned_cols=155 Identities=30% Similarity=0.406 Sum_probs=115.4
Q ss_pred cHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC-----CCeEEEeCcHHHHHHHHHHHHHHcC----CceEEecC
Q 011387 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEKG----IAGEFLSS 110 (487)
Q Consensus 40 ~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~~L~~q~~~~l~~~~----~~~~~~~~ 110 (487)
||+|.++++.+.+|+++++.||||+|||++|++|++.. ..++++++|+++|++|+.+.+...+ +....+.+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999988642 3499999999999999999998853 35666666
Q ss_pred CCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhh--hhcCCccEEEEeccccccccCCCChHHHHHHHHHH
Q 011387 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (487)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~--~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~ 188 (487)
+.........+. .. ..+++++||+.+ ..+... .....++++|+||+|.+..++ ++..+..+....
T Consensus 81 ~~~~~~~~~~~~---~~--~~~ilv~T~~~l------~~~~~~~~~~~~~~~~iViDE~h~l~~~~--~~~~~~~i~~~~ 147 (169)
T PF00270_consen 81 GQSISEDQREVL---SN--QADILVTTPEQL------LDLISNGKINISRLSLIVIDEAHHLSDET--FRAMLKSILRRL 147 (169)
T ss_dssp TSCHHHHHHHHH---HT--TSSEEEEEHHHH------HHHHHTTSSTGTTESEEEEETHHHHHHTT--HHHHHHHHHHHS
T ss_pred cccccccccccc---cc--cccccccCcchh------hccccccccccccceeeccCccccccccc--HHHHHHHHHHHh
Confidence 665442221111 11 266766666653 233221 234559999999999999874 677677766666
Q ss_pred HhCCCCcEEEEecCCChHH
Q 011387 189 NYLPDVPILALTATAAPKV 207 (487)
Q Consensus 189 ~~~~~~~~i~lSAT~~~~~ 207 (487)
...++.+++++|||+++.+
T Consensus 148 ~~~~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 148 KRFKNIQIILLSATLPSNV 166 (169)
T ss_dssp HTTTTSEEEEEESSSTHHH
T ss_pred cCCCCCcEEEEeeCCChhH
Confidence 6666899999999999443
No 112
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=2.2e-20 Score=183.51 Aligned_cols=325 Identities=16% Similarity=0.142 Sum_probs=218.7
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc-----CCCeEEEeCcHHHHHHHHHHHHH-------Hc
Q 011387 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLK-------EK 101 (487)
Q Consensus 34 fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~-----~~~~~lvl~P~~~L~~q~~~~l~-------~~ 101 (487)
.-.+++..+|.++++.+.+|+++++.-.|.+||++||++.+.. .....++++|+.++++++.+... .+
T Consensus 282 ~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~ 361 (1034)
T KOG4150|consen 282 NTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKAR 361 (1034)
T ss_pred ccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhh
Confidence 4557899999999999999999999999999999999977643 36678999999999998654421 11
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccc-cCCCChHH
Q 011387 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS-WGHDFRPS 180 (487)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~-~g~~f~~~ 180 (487)
.-..+...-+.+..... .+.. ...+++|..|..+.|...-+.+......-.+.+.++||+|...- .|..-...
T Consensus 362 K~A~V~~~D~~sE~~~~----A~~R--~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~ 435 (1034)
T KOG4150|consen 362 KSAYVEMSDKLSETTKS----ALKR--IGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQ 435 (1034)
T ss_pred hcceeecccCCCchhHH----HHHh--cCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHH
Confidence 11111111111111111 1111 12788888888776655444443333333456799999998753 23222334
Q ss_pred HHHHHHHHHhCC---CCcEEEEecCCChHHHHHHHHHhcCCCCeEEe--cCCCCCcceEEEEeeC------chhhHHHHH
Q 011387 181 YRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYKD------LLDDAYADL 249 (487)
Q Consensus 181 ~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~~v~~~~------~~~~~~~~l 249 (487)
++.|..+...|. +.+++-.+||.-..++. .....++.+...+. .++.....+....+.. ..+.++...
T Consensus 436 ~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~-~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~ 514 (1034)
T KOG4150|consen 436 LRALSDLIKGFEASINMGVYDGDTPYKDRTRL-RSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEV 514 (1034)
T ss_pred HHHHHHHHHHHHhhcCcceEeCCCCcCCHHHH-HHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHH
Confidence 455555655553 67888888888766644 24444555544433 2222222222222211 112233333
Q ss_pred HHHHHh--CCCceEEEEecccchHHHHHHHHHh----CCC----ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc
Q 011387 250 CSVLKA--NGDTCAIVYCLERTTCDELSAYLSA----GGI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (487)
Q Consensus 250 ~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~----~g~----~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~ 319 (487)
..++.+ ..+-++|-||.+|+.||.+-...++ -|. .+..|.||.+.++|.++..+...|+..-+|||++++
T Consensus 515 s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALE 594 (1034)
T KOG4150|consen 515 SHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALE 594 (1034)
T ss_pred HHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhh
Confidence 333222 1456799999999999877655443 222 245689999999999999999999999999999999
Q ss_pred cccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecc
Q 011387 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (487)
Q Consensus 320 ~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~ 365 (487)
.|||+..++-|++.++|.|+.++.|..|||||.++++.++.+....
T Consensus 595 LGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~ 640 (1034)
T KOG4150|consen 595 LGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLG 640 (1034)
T ss_pred hccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEecc
Confidence 9999999999999999999999999999999999998877665443
No 113
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=4.7e-20 Score=184.33 Aligned_cols=300 Identities=18% Similarity=0.206 Sum_probs=198.5
Q ss_pred CcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc------CCCe-EEEeCcHHHHHHHHHHHHHH-cCCceEEecC
Q 011387 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGI-VLVVSPLIALMENQVIGLKE-KGIAGEFLSS 110 (487)
Q Consensus 39 ~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~------~~~~-~lvl~P~~~L~~q~~~~l~~-~~~~~~~~~~ 110 (487)
.+++-.+.+.++-.++-++|.+.||||||. ++|... ++++ +=+-.|.|--+.....+... +|+...--.+
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVG 343 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVG 343 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccc
Confidence 445666788888888889999999999997 677653 2444 66777999887777766544 4433211110
Q ss_pred CCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHh
Q 011387 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190 (487)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~ 190 (487)
-. . .+++..+ ....+-|+|..++ +..+.....+...+++||||||.-.-- -.-.+..+..+.+.
T Consensus 344 Ys---I---RFEdcTS--ekTvlKYMTDGmL-----lREfL~epdLasYSViiiDEAHERTL~---TDILfgLvKDIar~ 407 (902)
T KOG0923|consen 344 YS---I---RFEDCTS--EKTVLKYMTDGML-----LREFLSEPDLASYSVIIVDEAHERTLH---TDILFGLVKDIARF 407 (902)
T ss_pred eE---E---EeccccC--cceeeeeecchhH-----HHHHhccccccceeEEEeehhhhhhhh---hhHHHHHHHHHHhh
Confidence 00 0 0011111 1234444444433 334555566777899999999974210 01112344555666
Q ss_pred CCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCC--cceEEEEeeCchhhHHHHHH----HHHHhCCCceEEEE
Q 011387 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP--NLFYEVRYKDLLDDAYADLC----SVLKANGDTCAIVY 264 (487)
Q Consensus 191 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~----~~l~~~~~~~~iIf 264 (487)
.|+..+++.|||+..+-... + +.+..++..+-.|- .++|.-.+. .+.++.-. .+....+.+-+|||
T Consensus 408 RpdLKllIsSAT~DAekFS~----f-FDdapIF~iPGRRyPVdi~Yt~~PE---AdYldAai~tVlqIH~tqp~GDILVF 479 (902)
T KOG0923|consen 408 RPDLKLLISSATMDAEKFSA----F-FDDAPIFRIPGRRYPVDIFYTKAPE---ADYLDAAIVTVLQIHLTQPLGDILVF 479 (902)
T ss_pred CCcceEEeeccccCHHHHHH----h-ccCCcEEeccCcccceeeecccCCc---hhHHHHHHhhheeeEeccCCccEEEE
Confidence 68999999999998764332 2 23333333332222 223322222 23333322 22223466779999
Q ss_pred ecccchHHHHHHHHHh----C-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCC
Q 011387 265 CLERTTCDELSAYLSA----G-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335 (487)
Q Consensus 265 ~~s~~~~~~l~~~L~~----~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~ 335 (487)
....++.+...+.|.+ + .+-+.++|+.|+.+.+..+++.--.|..+|++||++++..|-|++|.+||.-++
T Consensus 480 ltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf 559 (902)
T KOG0923|consen 480 LTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGF 559 (902)
T ss_pred eccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcc
Confidence 9999988887777765 2 345789999999999999998888899999999999999999999999997665
Q ss_pred CC------------------CHHHHHHHHhccCCCCCCceEEEEEecc
Q 011387 336 PK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (487)
Q Consensus 336 p~------------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~ 365 (487)
.+ |..+-.||.|||||.| +|.|+-+|+..
T Consensus 560 ~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 560 VKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred ccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 43 7788899999999998 99999999844
No 114
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.9e-18 Score=169.78 Aligned_cols=164 Identities=21% Similarity=0.306 Sum_probs=125.4
Q ss_pred CcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHHHHhC--CCceEEEEecccchH
Q 011387 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTC 271 (487)
Q Consensus 194 ~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~--~~~~~iIf~~s~~~~ 271 (487)
.|++.+||||.+...+.-.. .+..-++-..+...|. ..+++.. ..+++|..-++.. .+.+++|-+-|++.+
T Consensus 387 ~q~i~VSATPg~~E~e~s~~--~vveQiIRPTGLlDP~--ievRp~~---~QvdDL~~EI~~r~~~~eRvLVTtLTKkmA 459 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGG--NVVEQIIRPTGLLDPE--IEVRPTK---GQVDDLLSEIRKRVAKNERVLVTTLTKKMA 459 (663)
T ss_pred CCEEEEECCCChHHHHhccC--ceeEEeecCCCCCCCc--eeeecCC---CcHHHHHHHHHHHHhcCCeEEEEeehHHHH
Confidence 46899999998754331100 0111111112223332 3344442 3455555555432 568999999999999
Q ss_pred HHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCC-----CCHHHHHHHH
Q 011387 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP-----KSMEAFYQES 346 (487)
Q Consensus 272 ~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p-----~s~~~y~Qr~ 346 (487)
|.|.++|.+.|+++.++|++...-+|.+++.+.+.|.++|||.-+.+-+|+|+|.|.+|..+|.. .|-.+.+|-+
T Consensus 460 EdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtI 539 (663)
T COG0556 460 EDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTI 539 (663)
T ss_pred HHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999854 5889999999
Q ss_pred hccCCCCCCceEEEEEecc
Q 011387 347 GRAGRDQLPSKSLLYYGMD 365 (487)
Q Consensus 347 GRagR~g~~g~~i~~~~~~ 365 (487)
|||.|. -.|.+++|.+.-
T Consensus 540 GRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 540 GRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHhhc-cCCeEEEEchhh
Confidence 999996 468888887643
No 115
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.84 E-value=2.4e-19 Score=185.79 Aligned_cols=323 Identities=20% Similarity=0.201 Sum_probs=195.8
Q ss_pred CcHHHHHHHHHHHcCCCEEEEcCCCchhhHHH--HHhHhc---CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCC
Q 011387 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT 113 (487)
Q Consensus 39 ~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~--~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~ 113 (487)
|-.+|.+.+..+-.++.++++|||.+|||.+- .+-... ..+.+|++.|+++|++|.........- ......+.+
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~-~~t~~rg~s 590 (1330)
T KOG0949|consen 512 PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFD-TKTFLRGVS 590 (1330)
T ss_pred CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhc-cCccccchh
Confidence 66799999999999999999999999999752 333333 278999999999999998877655321 111112221
Q ss_pred HHHHHHHHHHHhcCCCcccEEEeCcccc----cChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHH
Q 011387 114 MQVKTKIYEDLDSGKPSLRLLYVTPELT----ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (487)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~il~~tpe~v----~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~ 189 (487)
... ..-..........+++++.||.+ .+|.. ....-.+++++|+||+|++.....+ .+....-
T Consensus 591 l~g--~ltqEYsinp~nCQVLITvPecleslLlspp~-----~q~~cerIRyiIfDEVH~iG~~ed~------l~~Eqll 657 (1330)
T KOG0949|consen 591 LLG--DLTQEYSINPWNCQVLITVPECLESLLLSPPH-----HQKFCERIRYIIFDEVHLIGNEEDG------LLWEQLL 657 (1330)
T ss_pred hHh--hhhHHhcCCchhceEEEEchHHHHHHhcCchh-----hhhhhhcceEEEechhhhccccccc------hHHHHHH
Confidence 111 11112222233578999988843 33211 1112345889999999999763321 1111112
Q ss_pred hCCCCcEEEEecCCChHH-HHHHHHHhcC---CCCeEEec-------------CCCC-----------------------
Q 011387 190 YLPDVPILALTATAAPKV-QKDVMESLCL---QNPLVLKS-------------SFNR----------------------- 229 (487)
Q Consensus 190 ~~~~~~~i~lSAT~~~~~-~~~i~~~l~~---~~~~~~~~-------------~~~~----------------------- 229 (487)
.+-.+|++++|||..+.. ...+.+..+- .+...+.. ..+.
T Consensus 658 ~li~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~~ 737 (1330)
T KOG0949|consen 658 LLIPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLRE 737 (1330)
T ss_pred HhcCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhhc
Confidence 223789999999987642 2222221110 00000000 0000
Q ss_pred ------CcceEEEEeeC--------------ch-----------------------------------------------
Q 011387 230 ------PNLFYEVRYKD--------------LL----------------------------------------------- 242 (487)
Q Consensus 230 ------~~~~~~v~~~~--------------~~----------------------------------------------- 242 (487)
++....+.... ..
T Consensus 738 ~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k 817 (1330)
T KOG0949|consen 738 LSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQTK 817 (1330)
T ss_pred cccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhhh
Confidence 00000000000 00
Q ss_pred -----------------hhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHh-------------------------
Q 011387 243 -----------------DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA------------------------- 280 (487)
Q Consensus 243 -----------------~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~------------------------- 280 (487)
..++-.++..+++..--+.|+|.-.+..|+.+|..+..
T Consensus 818 ~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a 897 (1330)
T KOG0949|consen 818 EVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKRA 897 (1330)
T ss_pred hhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 01122233344555567889998888888776643321
Q ss_pred ------------CCC---------------------------------------------------ceEEecCCCCHHHH
Q 011387 281 ------------GGI---------------------------------------------------SCAAYHAGLNDKAR 297 (487)
Q Consensus 281 ------------~g~---------------------------------------------------~~~~~h~~l~~~~R 297 (487)
.++ .+.++|+||+...|
T Consensus 898 ~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR 977 (1330)
T KOG0949|consen 898 RDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYR 977 (1330)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHHH
Confidence 000 45789999999999
Q ss_pred HHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCC-CCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHH
Q 011387 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (487)
Q Consensus 298 ~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~-p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~ 375 (487)
..++-.|+.|...||+||..++.|||+|.-++|.-.|. --++-.|-|++|||||.|-.-.+.+.+..-....+++++.
T Consensus 978 ~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~FmgiP~~kv~rLlt 1056 (1330)
T KOG0949|consen 978 SLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIPRQKVQRLLT 1056 (1330)
T ss_pred HHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEEeCcHHHHHHHHH
Confidence 99999999999999999999999999995555554442 3478999999999999996655544444444444555544
No 116
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=5.8e-19 Score=186.78 Aligned_cols=321 Identities=20% Similarity=0.172 Sum_probs=221.0
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 011387 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (487)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~---- 100 (487)
.+.++..|. .+++.|.-.--.+..|+ ++.|.||.|||+++.+|++. .+..+.|++|+..|+.+.++.+..
T Consensus 73 Ea~~R~lGm-~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~ 149 (913)
T PRK13103 73 EAGKRVMGM-RHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEF 149 (913)
T ss_pred HHHHHHhCC-CcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 444566674 46778876655555555 99999999999999999874 488899999999999999998876
Q ss_pred cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH---HhhhhcCCccEEEEeccccccc-----
Q 011387 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS----- 172 (487)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l---~~~~~~~~l~~lViDEah~~~~----- 172 (487)
+|+.+..+.+.....++...+. .+++|+|.-.++-.-..+.+ ......+.+.+.||||+|.++=
T Consensus 150 lGl~v~~i~~~~~~~err~~Y~--------~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArt 221 (913)
T PRK13103 150 LGLSVGIVTPFQPPEEKRAAYA--------ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEART 221 (913)
T ss_pred cCCEEEEECCCCCHHHHHHHhc--------CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCC
Confidence 5899999988887777766654 78999998765322111111 1112246689999999999740
Q ss_pred ------cCC-------------------------------CCh------------HHHHHHHH-----------------
Q 011387 173 ------WGH-------------------------------DFR------------PSYRKLSS----------------- 186 (487)
Q Consensus 173 ------~g~-------------------------------~f~------------~~~~~l~~----------------- 186 (487)
-.. +|. .....+..
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~ 301 (913)
T PRK13103 222 PLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSA 301 (913)
T ss_pred ceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccCh
Confidence 000 110 00000000
Q ss_pred ------------HHHhC------------------------------------------------C--------------
Q 011387 187 ------------LRNYL------------------------------------------------P-------------- 192 (487)
Q Consensus 187 ------------l~~~~------------------------------------------------~-------------- 192 (487)
++... +
T Consensus 302 ~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfF 381 (913)
T PRK13103 302 HNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYF 381 (913)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHH
Confidence 11100 0
Q ss_pred --CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEE---EeeCchhhHHHHHHHHHHhC--CCceEEEEe
Q 011387 193 --DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN--GDTCAIVYC 265 (487)
Q Consensus 193 --~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~l~~~l~~~--~~~~~iIf~ 265 (487)
-..+.+||+|+.... ..+....+ -.++..+.++|.++... .+.. ...++..+.+.++.. .+.|+||-+
T Consensus 382 r~Y~kLsGMTGTa~te~-~Ef~~iY~---l~Vv~IPTnkP~~R~D~~d~vy~t-~~eK~~Ai~~ei~~~~~~GrPVLVGT 456 (913)
T PRK13103 382 RLYNKLSGMTGTADTEA-FEFRQIYG---LDVVVIPPNKPLARKDFNDLVYLT-AEEKYAAIITDIKECMALGRPVLVGT 456 (913)
T ss_pred HhcchhccCCCCCHHHH-HHHHHHhC---CCEEECCCCCCcccccCCCeEEcC-HHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 012556777775433 23333333 33556667777665332 2222 246777777776643 789999999
Q ss_pred cccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEEEcCccccccccC-------------------
Q 011387 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRK------------------- 325 (487)
Q Consensus 266 ~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~vLVaT~~~~~GiDip------------------- 325 (487)
.|.+..+.+++.|.+.|++.-.+++.....+-.-+-+ .| ...|.|||+++|||-||.
T Consensus 457 ~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~ 533 (913)
T PRK13103 457 ATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQ---AGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQ 533 (913)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHc---CCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHH
Confidence 9999999999999999998877777654444332222 34 457999999999999984
Q ss_pred ------------------CCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchH
Q 011387 326 ------------------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (487)
Q Consensus 326 ------------------~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~ 367 (487)
+-=+||-...+.|..-=-|-.||+||.|.||.+..|++.+|.
T Consensus 534 ~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 534 IAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 234789999999999999999999999999999999998764
No 117
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=4.7e-20 Score=184.62 Aligned_cols=299 Identities=15% Similarity=0.164 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHh------cCCCeEEEeCcHHHHHHHHHHHHHH-cCCceEEecCCCC
Q 011387 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQT 113 (487)
Q Consensus 41 ~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l------~~~~~~lvl~P~~~L~~q~~~~l~~-~~~~~~~~~~~~~ 113 (487)
..+.+.+..+.+++-+++++.||||||. ++|-. ..++.+-+-.|.+.-+...+.++.. +|.....- .+
T Consensus 359 ~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~---VG 433 (1042)
T KOG0924|consen 359 ACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDT---VG 433 (1042)
T ss_pred HHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccc---cc
Confidence 3566677777788888999999999997 44442 2366677777999888888777655 43221110 00
Q ss_pred HHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCC
Q 011387 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193 (487)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~ 193 (487)
... .+++.. .....|-|+|..++.... .....+...++||+||||.-+- + -.-.+-.+........+
T Consensus 434 YsI---RFEdvT--~~~T~IkymTDGiLLrEs-----L~d~~L~kYSviImDEAHERsl-N--tDilfGllk~~larRrd 500 (1042)
T KOG0924|consen 434 YSI---RFEDVT--SEDTKIKYMTDGILLRES-----LKDRDLDKYSVIIMDEAHERSL-N--TDILFGLLKKVLARRRD 500 (1042)
T ss_pred eEE---EeeecC--CCceeEEEeccchHHHHH-----hhhhhhhheeEEEechhhhccc-c--hHHHHHHHHHHHHhhcc
Confidence 000 011111 134667777776654332 2223345578999999998643 1 11222334445555568
Q ss_pred CcEEEEecCCChHHHHHHHHHhcCCCCeEEecC-CCCCcceEEEEeeCchhhHHHHHH-HHH---HhCCCceEEEEeccc
Q 011387 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKDLLDDAYADLC-SVL---KANGDTCAIVYCLER 268 (487)
Q Consensus 194 ~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~-~~l---~~~~~~~~iIf~~s~ 268 (487)
..+|..|||+...- +..+++ ..|.....+ ...-++.|.- ...++.++..+ ..+ ...+.+-++||....
T Consensus 501 lKliVtSATm~a~k---f~nfFg-n~p~f~IpGRTyPV~~~~~k---~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGq 573 (1042)
T KOG0924|consen 501 LKLIVTSATMDAQK---FSNFFG-NCPQFTIPGRTYPVEIMYTK---TPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQ 573 (1042)
T ss_pred ceEEEeeccccHHH---HHHHhC-CCceeeecCCccceEEEecc---CchHHHHHHHHhhheEeeccCCCCCEEEecCCC
Confidence 99999999997653 334444 333322221 1111222211 11123333222 122 222446689999988
Q ss_pred chHHHHHHHHHh----------CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCC-
Q 011387 269 TTCDELSAYLSA----------GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK- 337 (487)
Q Consensus 269 ~~~~~l~~~L~~----------~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~- 337 (487)
+..+-....++. .++.+..+.+.|+++-+.++++.-..|-.++||||++++..+-+|++++||..++.+
T Consensus 574 ediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~ 653 (1042)
T KOG0924|consen 574 EDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKL 653 (1042)
T ss_pred cchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceee
Confidence 876665555543 267889999999999999998887888899999999999999999999999776543
Q ss_pred -----------------CHHHHHHHHhccCCCCCCceEEEEEecc
Q 011387 338 -----------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (487)
Q Consensus 338 -----------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~ 365 (487)
|-.+--||.|||||.| +|.|+-+|+..
T Consensus 654 kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 654 KVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 6777899999999997 99999999864
No 118
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=1.9e-18 Score=181.10 Aligned_cols=322 Identities=18% Similarity=0.173 Sum_probs=219.4
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH---
Q 011387 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (487)
Q Consensus 27 ~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~--- 100 (487)
..+..+.+|. .+++.|.-.--.+..|+ +..+.||-|||+++.+|+.. .+..+-|++..-.|+..-.+++..
T Consensus 68 REA~~R~lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~ 144 (925)
T PRK12903 68 REATKRVLGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFN 144 (925)
T ss_pred HHHHHHHhCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHH
Confidence 3455567786 47888888776666665 89999999999999999864 377788888888999877766554
Q ss_pred -cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH---HhhhhcCCccEEEEeccccccc----
Q 011387 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS---- 172 (487)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l---~~~~~~~~l~~lViDEah~~~~---- 172 (487)
+|+.+....+......+...+. .+|.|+|.--++-....+.+ ......+.+.+.||||+|.++=
T Consensus 145 fLGLsvG~i~~~~~~~~rr~aY~--------~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEAr 216 (925)
T PRK12903 145 FLGLSVGINKANMDPNLKREAYA--------CDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAK 216 (925)
T ss_pred HhCCceeeeCCCCChHHHHHhcc--------CCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccC
Confidence 6999988887777766665543 67888887655432222222 1122245688899999998740
Q ss_pred -------cCCCChHHHHHHHHHHHhC------------------------------------------------------
Q 011387 173 -------WGHDFRPSYRKLSSLRNYL------------------------------------------------------ 191 (487)
Q Consensus 173 -------~g~~f~~~~~~l~~l~~~~------------------------------------------------------ 191 (487)
-+.+-...|..+..+...+
T Consensus 217 TPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~l 296 (925)
T PRK12903 217 TPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKV 296 (925)
T ss_pred CcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHH
Confidence 0000001111111111100
Q ss_pred -----------------------------------------------C----------------CCcEEEEecCCChHHH
Q 011387 192 -----------------------------------------------P----------------DVPILALTATAAPKVQ 208 (487)
Q Consensus 192 -----------------------------------------------~----------------~~~~i~lSAT~~~~~~ 208 (487)
+ -..+.+||+|+..+.
T Consensus 297 f~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~- 375 (925)
T PRK12903 297 MKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEE- 375 (925)
T ss_pred HhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHH-
Confidence 0 013567777765432
Q ss_pred HHHHHHhcCCCCeEEecCCCCCcceEEEE---eeCchhhHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhCCC
Q 011387 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVR---YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI 283 (487)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~ 283 (487)
..+.+.. +-.++..+.++|.++.... +.. ...++..+.+.++. ..+.|+||.|.|.+.++.+++.|.+.|+
T Consensus 376 ~Ef~~iY---~l~Vv~IPTnkP~~R~D~~d~iy~t-~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi 451 (925)
T PRK12903 376 QEFIDIY---NMRVNVVPTNKPVIRKDEPDSIFGT-KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANI 451 (925)
T ss_pred HHHHHHh---CCCEEECCCCCCeeeeeCCCcEEEc-HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 2333333 3345566677776665432 222 24667777776654 3788999999999999999999999999
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcC-CCcEEEEcCccccccccCCCc--------EEEEeCCCCCHHHHHHHHhccCCCCC
Q 011387 284 SCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRKDVR--------LVCHFNIPKSMEAFYQESGRAGRDQL 354 (487)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g-~~~vLVaT~~~~~GiDip~v~--------~VI~~~~p~s~~~y~Qr~GRagR~g~ 354 (487)
+...+++.-...+-. +.. ..| ...|.|||+++|||-||.--. +||....|.|..---|..||+||.|.
T Consensus 452 ~h~vLNAk~~e~EA~-IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGD 528 (925)
T PRK12903 452 PHTVLNAKQNAREAE-IIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGD 528 (925)
T ss_pred CceeecccchhhHHH-HHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCC
Confidence 988888874433322 222 235 467999999999999987332 89999999999999999999999999
Q ss_pred CceEEEEEecchH
Q 011387 355 PSKSLLYYGMDDR 367 (487)
Q Consensus 355 ~g~~i~~~~~~d~ 367 (487)
+|.+..|++.+|.
T Consensus 529 pGss~f~lSLeD~ 541 (925)
T PRK12903 529 VGESRFFISLDDQ 541 (925)
T ss_pred CCcceEEEecchH
Confidence 9999999987764
No 119
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.83 E-value=2.5e-18 Score=184.14 Aligned_cols=294 Identities=16% Similarity=0.136 Sum_probs=174.2
Q ss_pred CcHHHHHHHHHHH----c------CCCEEEEcCCCchhhHHHHHhHh-----cCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 011387 39 FRDKQLDAIQAVL----S------GRDCFCLMPTGGGKSMCYQIPAL-----AKPGIVLVVSPLIALMENQVIGLKEKGI 103 (487)
Q Consensus 39 ~~~~Q~~~i~~~l----~------~~dvlv~apTGsGKTl~~~lp~l-----~~~~~~lvl~P~~~L~~q~~~~l~~~~~ 103 (487)
+|.+|..++..+. . .+..++++|||||||++....+. ....++|+|+|+.+|..|+.+.+...+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 6789999998764 2 25789999999999987653322 2367899999999999999999999764
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCc-cEEEEeccccccccCCCChHHHH
Q 011387 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLL-NLVAIDEAHCISSWGHDFRPSYR 182 (487)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l-~~lViDEah~~~~~g~~f~~~~~ 182 (487)
.... ...+. ......+... ...++++|...+... ............- -+||+||||+... | .
T Consensus 319 ~~~~--~~~s~---~~L~~~l~~~--~~~iivtTiQk~~~~--~~~~~~~~~~~~~~~lvIvDEaHrs~~-~-------~ 381 (667)
T TIGR00348 319 DCAE--RIESI---AELKRLLEKD--DGGIIITTIQKFDKK--LKEEEEKFPVDRKEVVVIFDEAHRSQY-G-------E 381 (667)
T ss_pred CCCc--ccCCH---HHHHHHHhCC--CCCEEEEEhHHhhhh--HhhhhhccCCCCCCEEEEEEcCccccc-h-------H
Confidence 3211 11111 1111222222 245666655544320 1111111111111 2799999998532 2 1
Q ss_pred HHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcC-CCCeEEec--------CCCCCcceEEEEeeCc------h-----
Q 011387 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL-QNPLVLKS--------SFNRPNLFYEVRYKDL------L----- 242 (487)
Q Consensus 183 ~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~-~~~~~~~~--------~~~~~~~~~~v~~~~~------~----- 242 (487)
-...++..+|+...++|||||.......-...++. ....+... ++..| +.|....... .
T Consensus 382 ~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~-i~Y~~~~~~~~~~~~~l~~~~~ 460 (667)
T TIGR00348 382 LAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVK-IDYEDRLPEDHLDRKKLDAFFD 460 (667)
T ss_pred HHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeee-EEEEecchhhccChHHHHHHHH
Confidence 11335578899999999999964311111111111 11111111 11111 1111111000 0
Q ss_pred -----------------------------------hhHHHHHHHHHHh---CCCceEEEEecccchHHHHHHHHHhC---
Q 011387 243 -----------------------------------DDAYADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAG--- 281 (487)
Q Consensus 243 -----------------------------------~~~~~~l~~~l~~---~~~~~~iIf~~s~~~~~~l~~~L~~~--- 281 (487)
......+.+.... ..+.+++|+|.++..|..+++.|.+.
T Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~ 540 (667)
T TIGR00348 461 EIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNE 540 (667)
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccc
Confidence 0000111111111 12478999999999999999988664
Q ss_pred --CCceEEecCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEcCccccccccCCCcEEEEeCCCC
Q 011387 282 --GISCAAYHAGLNDK---------------------ARSSVLDDWIS-SRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337 (487)
Q Consensus 282 --g~~~~~~h~~l~~~---------------------~R~~~~~~f~~-g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~ 337 (487)
+..+..++++.+.+ ...++.++|++ +..+|||+++.+..|+|.|.+..++...+-+
T Consensus 541 ~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk 620 (667)
T TIGR00348 541 KFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK 620 (667)
T ss_pred ccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc
Confidence 24455666654332 12467888976 6889999999999999999999998777656
Q ss_pred CHHHHHHHHhccCC
Q 011387 338 SMEAFYQESGRAGR 351 (487)
Q Consensus 338 s~~~y~Qr~GRagR 351 (487)
+. .++|.+||+.|
T Consensus 621 ~h-~LlQai~R~nR 633 (667)
T TIGR00348 621 YH-GLLQAIARTNR 633 (667)
T ss_pred cc-HHHHHHHHhcc
Confidence 54 58999999999
No 120
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.83 E-value=2.2e-18 Score=190.15 Aligned_cols=179 Identities=14% Similarity=0.139 Sum_probs=114.1
Q ss_pred cEEEEecCCChH-HHHHHHHHhcCCCCeE--E-ecCCC-CCcceEEEEee-C-----chhhHHHHHH----HHHHhCCCc
Q 011387 195 PILALTATAAPK-VQKDVMESLCLQNPLV--L-KSSFN-RPNLFYEVRYK-D-----LLDDAYADLC----SVLKANGDT 259 (487)
Q Consensus 195 ~~i~lSAT~~~~-~~~~i~~~l~~~~~~~--~-~~~~~-~~~~~~~v~~~-~-----~~~~~~~~l~----~~l~~~~~~ 259 (487)
++|++|||++.. ....+.+.+|+.+... + .++++ ..+...-+... . ..+.....+. +++.. .++
T Consensus 597 ~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g 675 (850)
T TIGR01407 597 SLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSP 675 (850)
T ss_pred eEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCC
Confidence 578999999743 3456677888865432 2 23333 22322222110 0 1122222333 33333 446
Q ss_pred eEEEEecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCc--EEEEe
Q 011387 260 CAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR--LVCHF 333 (487)
Q Consensus 260 ~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~--~VI~~ 333 (487)
++|||++|.+..+.+++.|.. .++. .+..+.. ..|.++++.|++|+..||++|+.+++|||+|+.. .||..
T Consensus 676 ~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~ 752 (850)
T TIGR01407 676 KILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIP 752 (850)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEe
Confidence 799999999999999999975 2333 3333433 5788999999999999999999999999999765 57778
Q ss_pred CCCC------------------------------CHHHHHHHHhccCCCCCCceEEEEEecc--hHHHHHHHHHhc
Q 011387 334 NIPK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD--DRRRMEFILSKN 377 (487)
Q Consensus 334 ~~p~------------------------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~--d~~~~~~i~~~~ 377 (487)
.+|- .+..+.|.+||.-|.....-++++++.. ...+-+.+++..
T Consensus 753 ~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 753 RLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSL 828 (850)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhC
Confidence 8773 1123468999999987555456666554 333444454443
No 121
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.82 E-value=2.6e-18 Score=174.62 Aligned_cols=307 Identities=19% Similarity=0.220 Sum_probs=221.0
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEcCCCchhhHHH--HHhHh----cCCCeEEEeCcHHHHHHHHHHHHHHc--CCc
Q 011387 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCY--QIPAL----AKPGIVLVVSPLIALMENQVIGLKEK--GIA 104 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l----~~~dvlv~apTGsGKTl~~--~lp~l----~~~~~~lvl~P~~~L~~q~~~~l~~~--~~~ 104 (487)
..+|++|.+.++.+. .|-+.++.-..|-|||+-. ++.-+ ...|.-+|++|...| ..|+.+++++ ++.
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTPSLN 244 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCCCcc
Confidence 379999999887764 5668888889999999632 22222 237889999999777 6688888886 566
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHH
Q 011387 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (487)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l 184 (487)
+..+.++. .++.....++.... ..+++++|.|++... ......-+++++||||||++-... ..|
T Consensus 245 ~~~~~Gdk--~eR~~~~r~~~~~~-~fdV~iTsYEi~i~d------k~~lk~~~W~ylvIDEaHRiKN~~-------s~L 308 (971)
T KOG0385|consen 245 VVVYHGDK--EERAALRRDIMLPG-RFDVCITSYEIAIKD------KSFLKKFNWRYLVIDEAHRIKNEK-------SKL 308 (971)
T ss_pred eEEEeCCH--HHHHHHHHHhhccC-CCceEeehHHHHHhh------HHHHhcCCceEEEechhhhhcchh-------hHH
Confidence 66666554 44444444443332 578888887766432 222333468999999999997644 566
Q ss_pred HHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC--------------------------------------
Q 011387 185 SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-------------------------------------- 226 (487)
Q Consensus 185 ~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-------------------------------------- 226 (487)
....+.|.....+++|+||-.+....++..|+.--|.++...
T Consensus 309 ~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dV 388 (971)
T KOG0385|consen 309 SKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDV 388 (971)
T ss_pred HHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhH
Confidence 677788877788999999988777777776665544444210
Q ss_pred --------------------------------------------------------CCCCcceEEEEeeCc---------
Q 011387 227 --------------------------------------------------------FNRPNLFYEVRYKDL--------- 241 (487)
Q Consensus 227 --------------------------------------------------------~~~~~~~~~v~~~~~--------- 241 (487)
.+.|.++....+...
T Consensus 389 e~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~ 468 (971)
T KOG0385|consen 389 EKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVT 468 (971)
T ss_pred hhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHh
Confidence 001111111000000
Q ss_pred hhhH---HHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC---CCcEEEEc
Q 011387 242 LDDA---YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQVVVAT 315 (487)
Q Consensus 242 ~~~~---~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g---~~~vLVaT 315 (487)
...+ ++.|+..++. .+.++|||.+-.....-+..+..-+++....+.|..+.++|...++.|... ..-.|++|
T Consensus 469 nSGKm~vLDkLL~~Lk~-~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLST 547 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKE-QGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLST 547 (971)
T ss_pred cCcceehHHHHHHHHHh-CCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEec
Confidence 0011 1222222222 567899999998889889998888999999999999999999999999854 35589999
Q ss_pred CccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEE
Q 011387 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (487)
Q Consensus 316 ~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 361 (487)
.|.|.|||+...+.||.||..|++..-.|..-||.|-|+...+.+|
T Consensus 548 RAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 548 RAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred cccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 9999999999999999999999999999999999999988776665
No 122
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.81 E-value=2.1e-17 Score=174.26 Aligned_cols=283 Identities=16% Similarity=0.100 Sum_probs=184.2
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 011387 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (487)
Q Consensus 26 ~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (487)
+..+..+.+|+. +++.|.-..-.+.. .-++.+.||.|||+++.+|+.. .+..+.||++...|+.+-.+.+..
T Consensus 65 vrEa~~R~lG~r-~ydvQlig~l~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 65 TREASFRTLGLR-HFDVQLIGGLVLND--GKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred HHHHHHHHhCCC-CCchHhhhhHhhcC--CccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHH
Confidence 345556677865 77888776655544 4599999999999999999854 378899999999999988877655
Q ss_pred --cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH---HhhhhcCCccEEEEeccccccc---
Q 011387 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS--- 172 (487)
Q Consensus 101 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l---~~~~~~~~l~~lViDEah~~~~--- 172 (487)
+|+.+..+.++....++...+. .+|.|+|.--++-.-..+.+ ......+.+.+.||||+|.++=
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeA 213 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYL--------KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEA 213 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcC--------CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccC
Confidence 6999998888777777665544 68889887655432222222 1112245688999999998740
Q ss_pred ----------------------------cCCCCh------------HHHHHHHH---------------------HHHhC
Q 011387 173 ----------------------------WGHDFR------------PSYRKLSS---------------------LRNYL 191 (487)
Q Consensus 173 ----------------------------~g~~f~------------~~~~~l~~---------------------l~~~~ 191 (487)
.+.+|. .....+.. ++..+
T Consensus 214 rTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~ 293 (870)
T CHL00122 214 RTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKE 293 (870)
T ss_pred CCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHH
Confidence 000110 00111111 11110
Q ss_pred ---------------------------------------------C-------------------CCcEEEEecCCChHH
Q 011387 192 ---------------------------------------------P-------------------DVPILALTATAAPKV 207 (487)
Q Consensus 192 ---------------------------------------------~-------------------~~~~i~lSAT~~~~~ 207 (487)
+ -..+.+||+|+...
T Consensus 294 lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te- 372 (870)
T CHL00122 294 LFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTE- 372 (870)
T ss_pred HHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHH-
Confidence 0 01367888887543
Q ss_pred HHHHHHHhcCCCCeEEecCCCCCcceEEEEe--eCchhhHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhCCC
Q 011387 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI 283 (487)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~ 283 (487)
...+.+..++ .++..+.++|..+..... ......++..+.+.+.. ..+.|+||-|.|.+..+.+++.|.+.|+
T Consensus 373 ~~Ef~~iY~l---~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi 449 (870)
T CHL00122 373 ELEFEKIYNL---EVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRL 449 (870)
T ss_pred HHHHHHHhCC---CEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCC
Confidence 3333443333 355567777776654321 11224566666665543 3788999999999999999999999999
Q ss_pred ceEEecCCCC--HHHHHHHHHHHhcCCCcEEEEcCccccccccC
Q 011387 284 SCAAYHAGLN--DKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325 (487)
Q Consensus 284 ~~~~~h~~l~--~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip 325 (487)
+...+++.-. ..+- +++.. ..-...|.|||+++|||.||.
T Consensus 450 ~h~vLNAk~~~~~~EA-~IIA~-AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 450 PHQLLNAKPENVRRES-EIVAQ-AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred ccceeeCCCccchhHH-HHHHh-cCCCCcEEEeccccCCCcCee
Confidence 9999998742 3332 23322 223357999999999998864
No 123
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=7.1e-19 Score=179.03 Aligned_cols=301 Identities=17% Similarity=0.207 Sum_probs=187.9
Q ss_pred HHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc-----------CCCeEEEeCcHHHHHHHHHHH----HHHcCCceEEe
Q 011387 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPGIVLVVSPLIALMENQVIG----LKEKGIAGEFL 108 (487)
Q Consensus 44 ~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~-----------~~~~~lvl~P~~~L~~q~~~~----l~~~~~~~~~~ 108 (487)
++++++|..+--++|++.||||||. ++|... .++.+=|--|.|--+--..++ |..++-.+.+.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 3456666667778899999999997 555432 144566666887554444443 33333333222
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHH
Q 011387 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (487)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~ 188 (487)
.. ++. ...+..+|.++|..++. ..+....-+...+.||+||||.-+-...-.-..+.++-.++
T Consensus 340 IR----------fd~--ti~e~T~IkFMTDGVLL-----rEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR 402 (1172)
T KOG0926|consen 340 IR----------FDG--TIGEDTSIKFMTDGVLL-----REIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLR 402 (1172)
T ss_pred EE----------ecc--ccCCCceeEEecchHHH-----HHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHH
Confidence 10 000 12234566666655442 33444444566889999999986532111112223444455
Q ss_pred HhCC-------CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCc---hhhHHHHHHHHHHhCCC
Q 011387 189 NYLP-------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL---LDDAYADLCSVLKANGD 258 (487)
Q Consensus 189 ~~~~-------~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~l~~~~~ 258 (487)
..+. ...+|+||||+.-.....-...+-+..| ++......-.+.+++..... ..+.+.....+-+..+.
T Consensus 403 ~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP-likVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~ 481 (1172)
T KOG0926|consen 403 QKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPP-LIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPP 481 (1172)
T ss_pred HHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCc-eeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCC
Confidence 4433 3568999999864432211222223333 33333222223333333322 22334444445555678
Q ss_pred ceEEEEecccchHHHHHHHHHhC-----C-C-------------------------------------------------
Q 011387 259 TCAIVYCLERTTCDELSAYLSAG-----G-I------------------------------------------------- 283 (487)
Q Consensus 259 ~~~iIf~~s~~~~~~l~~~L~~~-----g-~------------------------------------------------- 283 (487)
+.+|||+-...++.++.+.|++. + .
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 88999999999999999998753 0 0
Q ss_pred --------------------------------------------ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc
Q 011387 284 --------------------------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (487)
Q Consensus 284 --------------------------------------------~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~ 319 (487)
-+..+++-++.+++.++++.--.|..-++|||++++
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 135677778888888888888888999999999999
Q ss_pred cccccCCCcEEEEeCCCC------------------CHHHHHHHHhccCCCCCCceEEEEEecc
Q 011387 320 MGIDRKDVRLVCHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (487)
Q Consensus 320 ~GiDip~v~~VI~~~~p~------------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~ 365 (487)
..+-||++++||..+..+ |..+--||+|||||.| +|.|+-+|+..
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 999999999999766543 4455579999999997 99999998754
No 124
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.79 E-value=2.3e-18 Score=146.80 Aligned_cols=118 Identities=30% Similarity=0.477 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHhC--CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccc
Q 011387 244 DAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (487)
Q Consensus 244 ~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~G 321 (487)
.+...+.+++... .++++||||++.+.++.+++.|.+.+..+..+||+++..+|..+.+.|.+|...+|++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 5677777777765 47889999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEE
Q 011387 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (487)
Q Consensus 322 iDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 361 (487)
+|+|.+++||+++.|++...|.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887764
No 125
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.78 E-value=1.9e-17 Score=163.16 Aligned_cols=282 Identities=19% Similarity=0.234 Sum_probs=190.4
Q ss_pred CCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccE
Q 011387 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 133 (487)
+-++.++||.||||--+ +--+......++..|++-|+.+.++++.+.|+++..+++.. +... .. .......
T Consensus 192 kIi~H~GPTNSGKTy~A-Lqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE----~~~~---~~-~~~~a~h 262 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA-LQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEE----RRFV---LD-NGNPAQH 262 (700)
T ss_pred eEEEEeCCCCCchhHHH-HHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccce----eeec---CC-CCCcccc
Confidence 44667889999999653 33344467789999999999999999999999998876542 1111 11 1234677
Q ss_pred EEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHH
Q 011387 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (487)
Q Consensus 134 l~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~ 213 (487)
+-+|-|++.+.. .+++.||||.+.+.+-...+.-.-.-|+..... +. +. -.+.+...+.+
T Consensus 263 vScTVEM~sv~~------------~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdE---iH---LC--GepsvldlV~~ 322 (700)
T KOG0953|consen 263 VSCTVEMVSVNT------------PYEVAVIDEIQMMRDPSRGWAWTRALLGLAADE---IH---LC--GEPSVLDLVRK 322 (700)
T ss_pred eEEEEEEeecCC------------ceEEEEehhHHhhcCcccchHHHHHHHhhhhhh---hh---cc--CCchHHHHHHH
Confidence 788888776643 478999999999987332222221122211111 11 11 23445455555
Q ss_pred HhcCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHHHHhC-CCceEEEEecccchHHHHHHHHHhCCCc-eEEecCC
Q 011387 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAG 291 (487)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~h~~ 291 (487)
.+.+....+....+.|-+ .- ...+.+..-++.. +|++ |.|-|++....+...+.+.|.. ++.+.|+
T Consensus 323 i~k~TGd~vev~~YeRl~-------pL---~v~~~~~~sl~nlk~GDC--vV~FSkk~I~~~k~kIE~~g~~k~aVIYGs 390 (700)
T KOG0953|consen 323 ILKMTGDDVEVREYERLS-------PL---VVEETALGSLSNLKPGDC--VVAFSKKDIFTVKKKIEKAGNHKCAVIYGS 390 (700)
T ss_pred HHhhcCCeeEEEeecccC-------cc---eehhhhhhhhccCCCCCe--EEEeehhhHHHHHHHHHHhcCcceEEEecC
Confidence 554443332222222111 10 1111233334443 4554 5577889999999999988765 9999999
Q ss_pred CCHHHHHHHHHHHhc--CCCcEEEEcCccccccccCCCcEEEEeCCCC---------CHHHHHHHHhccCCCCC--CceE
Q 011387 292 LNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNIPK---------SMEAFYQESGRAGRDQL--PSKS 358 (487)
Q Consensus 292 l~~~~R~~~~~~f~~--g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~---------s~~~y~Qr~GRagR~g~--~g~~ 358 (487)
++++.|.+-...|.+ ++.+|||||||+|||+|+ +++.||.+++-+ +..+..|.+|||||.|. +.-.
T Consensus 391 LPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~ 469 (700)
T KOG0953|consen 391 LPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGE 469 (700)
T ss_pred CCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCce
Confidence 999999999999987 899999999999999999 699999988653 67889999999999873 2223
Q ss_pred EEEEecchHHHHHHHHHhc
Q 011387 359 LLYYGMDDRRRMEFILSKN 377 (487)
Q Consensus 359 i~~~~~~d~~~~~~i~~~~ 377 (487)
++-+..+|...++.+++..
T Consensus 470 vTtl~~eDL~~L~~~l~~p 488 (700)
T KOG0953|consen 470 VTTLHSEDLKLLKRILKRP 488 (700)
T ss_pred EEEeeHhhHHHHHHHHhCC
Confidence 4556678888888888754
No 126
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.77 E-value=4.9e-18 Score=180.39 Aligned_cols=308 Identities=18% Similarity=0.194 Sum_probs=198.4
Q ss_pred CcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc--------CCCeEEEeCcHHHHHHHHHHHHHH-cCCceEEec
Q 011387 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (487)
Q Consensus 39 ~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~--------~~~~~lvl~P~~~L~~q~~~~l~~-~~~~~~~~~ 109 (487)
.+..++++++++.+++.+++.+.||+|||. ++|... ....+++-.|.|--+-..+++... .+....
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTT--QvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g--- 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTT--QVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLG--- 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchh--hhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccC---
Confidence 445778888999899999999999999997 344321 134577777987666655555543 211111
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHH
Q 011387 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (487)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~ 189 (487)
...+.+.+ . ... .....+++|+|..+ .+..+........+..+|+||+|.-+... ||-- ..+..+..
T Consensus 249 ~~VGYqvr--l-~~~--~s~~t~L~fcTtGv-----LLr~L~~~~~l~~vthiivDEVHER~i~~-DflL--i~lk~lL~ 315 (924)
T KOG0920|consen 249 EEVGYQVR--L-ESK--RSRETRLLFCTTGV-----LLRRLQSDPTLSGVTHIIVDEVHERSINT-DFLL--ILLKDLLP 315 (924)
T ss_pred CeeeEEEe--e-ecc--cCCceeEEEecHHH-----HHHHhccCcccccCceeeeeeEEEccCCc-ccHH--HHHHHHhh
Confidence 00000000 0 000 11124454444332 33444455556778899999999876533 3433 33444566
Q ss_pred hCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcc-------------------eEE-------------EE
Q 011387 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL-------------------FYE-------------VR 237 (487)
Q Consensus 190 ~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-------------------~~~-------------v~ 237 (487)
.-|+.++|+||||...+...+.+ + ..|.+...+..-|-. .+. +.
T Consensus 316 ~~p~LkvILMSAT~dae~fs~YF---~-~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (924)
T KOG0920|consen 316 RNPDLKVILMSATLDAELFSDYF---G-GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLW 391 (924)
T ss_pred hCCCceEEEeeeecchHHHHHHh---C-CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhc
Confidence 66899999999999865443322 2 333332222111100 000 00
Q ss_pred eeCchhhHHHHHHHHHHhC-CCceEEEEecccchHHHHHHHHHhC-------CCceEEecCCCCHHHHHHHHHHHhcCCC
Q 011387 238 YKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAG-------GISCAAYHAGLNDKARSSVLDDWISSRK 309 (487)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (487)
..+..-+.+..+...+... ..+.+|||.+...+...+.+.|... ..-+..+|+.|+..++..+...--.|..
T Consensus 392 ~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~R 471 (924)
T KOG0920|consen 392 EPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTR 471 (924)
T ss_pred cccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcc
Confidence 0111123344444444443 4678999999999999999999752 2457889999999999999998889999
Q ss_pred cEEEEcCccccccccCCCcEEEEeCCCC------------------CHHHHHHHHhccCCCCCCceEEEEEecchHHH
Q 011387 310 QVVVATVAFGMGIDRKDVRLVCHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (487)
Q Consensus 310 ~vLVaT~~~~~GiDip~v~~VI~~~~p~------------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~ 369 (487)
+||+||++++.+|-|+||-+||..+.-+ |..+-.||.|||||. .+|.|+-+|+......
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhh
Confidence 9999999999999999999999766432 556678999999998 5899999988665443
No 127
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.77 E-value=1.3e-18 Score=134.24 Aligned_cols=78 Identities=35% Similarity=0.520 Sum_probs=75.8
Q ss_pred HHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCC
Q 011387 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (487)
Q Consensus 276 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g 353 (487)
+.|+..|+.+..+||+++.++|..+++.|.+++..|||||+++++|||+|++++||+++.|+|...|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999999987
No 128
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.76 E-value=9.8e-18 Score=173.23 Aligned_cols=292 Identities=20% Similarity=0.215 Sum_probs=173.9
Q ss_pred CCCcHHHHHHHHHHH----cC-CCEEEEcCCCchhhHHHH--HhHhcC---CCeEEEeCcHHHHHHHHHHHHHHcCCceE
Q 011387 37 AQFRDKQLDAIQAVL----SG-RDCFCLMPTGGGKSMCYQ--IPALAK---PGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l----~~-~dvlv~apTGsGKTl~~~--lp~l~~---~~~~lvl~P~~~L~~q~~~~l~~~~~~~~ 106 (487)
..+|.+|..||..+. +| +.++++|.||+|||..++ +-.|.+ -+++|.++-+++|..|....+..+-....
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 478999999997654 44 468999999999996543 333333 67899999999999999988877522211
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHH-HHHhhhhcCCccEEEEeccccccccCCCChHHHHHHH
Q 011387 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS-KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (487)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~-~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~ 185 (487)
..+... ...+..+.++.+.|...+.....-. .-......+.+++|||||||+=. |..-.
T Consensus 244 ~~n~i~-----------~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi---------~~~~~ 303 (875)
T COG4096 244 KMNKIE-----------DKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI---------YSEWS 303 (875)
T ss_pred ceeeee-----------cccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH---------HhhhH
Confidence 111100 0011113556555443332111000 01112234558999999999742 23333
Q ss_pred HHHHhCCCCcEEEEecCCChHHHHHHHHHh-cCC----------------CC--eEEecCCCCCcc--------------
Q 011387 186 SLRNYLPDVPILALTATAAPKVQKDVMESL-CLQ----------------NP--LVLKSSFNRPNL-------------- 232 (487)
Q Consensus 186 ~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l-~~~----------------~~--~~~~~~~~~~~~-------------- 232 (487)
.+...|... .+++|||+......+-...+ +.+ .+ +.+...+.+.-+
T Consensus 304 ~I~dYFdA~-~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 304 SILDYFDAA-TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHHH-HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 444444333 34559998765433323333 111 01 111111111000
Q ss_pred -------eEEEEee-------CchhhHHHHHHHHHHh--CC--CceEEEEecccchHHHHHHHHHhCC-----CceEEec
Q 011387 233 -------FYEVRYK-------DLLDDAYADLCSVLKA--NG--DTCAIVYCLERTTCDELSAYLSAGG-----ISCAAYH 289 (487)
Q Consensus 233 -------~~~v~~~-------~~~~~~~~~l~~~l~~--~~--~~~~iIf~~s~~~~~~l~~~L~~~g-----~~~~~~h 289 (487)
.+..... ...+.....+.+.++. .+ .+++||||.+..+|+.+...|.+.. --+..+.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 0100000 0001223345556665 22 4689999999999999999998742 2344555
Q ss_pred CCCCHHHHHHHHHHHhc-C-CCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCC
Q 011387 290 AGLNDKARSSVLDDWIS-S-RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351 (487)
Q Consensus 290 ~~l~~~~R~~~~~~f~~-g-~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR 351 (487)
++-.+. ...++.|.. . --+|.|+.+++..|||+|.|..++.+....|..-|.|++||+-|
T Consensus 463 ~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTR 524 (875)
T COG4096 463 GDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTR 524 (875)
T ss_pred ccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccc
Confidence 554333 344566655 3 35688888999999999999999999999999999999999999
No 129
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=1.3e-15 Score=160.60 Aligned_cols=281 Identities=19% Similarity=0.164 Sum_probs=183.8
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 011387 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (487)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~---- 100 (487)
.+.++..|.. +++.|.-.--.+..|+ ++.|.||-|||+++.+|+.. .+..+.||++...|+..-.+.+..
T Consensus 76 Ea~~R~lG~r-~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~ 152 (939)
T PRK12902 76 EASKRVLGMR-HFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRF 152 (939)
T ss_pred HHHHHHhCCC-cchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHH
Confidence 4455667763 7778877666665555 99999999999999999876 378899999999999987777655
Q ss_pred cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh---hhhcCCccEEEEeccccccc-----
Q 011387 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCISS----- 172 (487)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~---~~~~~~l~~lViDEah~~~~----- 172 (487)
+|+.+..+.+.....++...+. .+|+|+|+.-++-.-..+.+.. ....+.+.+.||||+|.++=
T Consensus 153 LGLtvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArT 224 (939)
T PRK12902 153 LGLSVGLIQQDMSPEERKKNYA--------CDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEART 224 (939)
T ss_pred hCCeEEEECCCCChHHHHHhcC--------CCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCC
Confidence 6999998887777766655543 7899999876654333333321 12345688999999998740
Q ss_pred ------cCCCChHHHHHH--------------------------------------H---------------------HH
Q 011387 173 ------WGHDFRPSYRKL--------------------------------------S---------------------SL 187 (487)
Q Consensus 173 ------~g~~f~~~~~~l--------------------------------------~---------------------~l 187 (487)
-...-...|... . .+
T Consensus 225 PLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL 304 (939)
T PRK12902 225 PLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNAL 304 (939)
T ss_pred cccccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHH
Confidence 000000011000 0 00
Q ss_pred HHh--C----------------------------------------------C----------------CCcEEEEecCC
Q 011387 188 RNY--L----------------------------------------------P----------------DVPILALTATA 203 (487)
Q Consensus 188 ~~~--~----------------------------------------------~----------------~~~~i~lSAT~ 203 (487)
+.. | + -..+.+||+|+
T Consensus 305 ~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa 384 (939)
T PRK12902 305 KAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTA 384 (939)
T ss_pred HHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCC
Confidence 000 0 0 01356777776
Q ss_pred ChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEe--eCchhhHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHH
Q 011387 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLS 279 (487)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~ 279 (487)
.... ..+.+.. +-.++..+.++|.++..... ......++..+.+.++. ..+.|+||-+.|.+..+.++..|.
T Consensus 385 ~te~-~Ef~~iY---~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~ 460 (939)
T PRK12902 385 KTEE-VEFEKTY---KLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQ 460 (939)
T ss_pred HHHH-HHHHHHh---CCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHH
Confidence 5433 2233333 33456667777776654321 11224667777766654 378999999999999999999999
Q ss_pred hCCCceEEecCCCCHHHH-HHHHHHHhcCC-CcEEEEcCccccccccC
Q 011387 280 AGGISCAAYHAGLNDKAR-SSVLDDWISSR-KQVVVATVAFGMGIDRK 325 (487)
Q Consensus 280 ~~g~~~~~~h~~l~~~~R-~~~~~~f~~g~-~~vLVaT~~~~~GiDip 325 (487)
+.|++...+++.-...++ .++... .|. ..|-|||+++|||-||.
T Consensus 461 ~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 461 EQGIPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HcCCchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 999998889986222222 233332 343 57999999999998865
No 130
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.76 E-value=8.2e-17 Score=164.60 Aligned_cols=325 Identities=17% Similarity=0.135 Sum_probs=219.3
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEcCCCchhhH--HHHHhHhcC----CCeEEEeCcHHHHHHHHHHHHHHcC--Cc
Q 011387 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSM--CYQIPALAK----PGIVLVVSPLIALMENQVIGLKEKG--IA 104 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l----~~~dvlv~apTGsGKTl--~~~lp~l~~----~~~~lvl~P~~~L~~q~~~~l~~~~--~~ 104 (487)
..+.++|++.+..+. ++.--++--..|-|||. +..|.+|.. .+.+|||||. .++.||++++.... ..
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~r 282 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFR 282 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceE
Confidence 368899999998765 34556777799999995 344566654 3789999997 78899999999853 44
Q ss_pred eEEecCCCCHHHHH-----HHHHHHh--cCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCC
Q 011387 105 GEFLSSTQTMQVKT-----KIYEDLD--SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 177 (487)
Q Consensus 105 ~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f 177 (487)
+.++++........ .-+..+. .....-.++ ++|..-+...........++++|+||.|.+-...
T Consensus 283 v~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~il------itty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpn--- 353 (923)
T KOG0387|consen 283 VFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGIL------ITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPN--- 353 (923)
T ss_pred EEEEecCCcccccccchhhhhhhhhheeeecccCcEE------EEehhhhcccCcccccccccEEEecCcccccCCc---
Confidence 55666555431110 0011100 011112233 3333333333334444568999999999997654
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEE----------------------------------
Q 011387 178 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL---------------------------------- 223 (487)
Q Consensus 178 ~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~---------------------------------- 223 (487)
.++......++....+.+|+|+-.+-...++..+....|-.+
T Consensus 354 ----s~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca 429 (923)
T KOG0387|consen 354 ----SKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCA 429 (923)
T ss_pred ----cHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHH
Confidence 566667778888899999999877665555544332221110
Q ss_pred ----------------------------------------------------------------------ecCCCCCcce
Q 011387 224 ----------------------------------------------------------------------KSSFNRPNLF 233 (487)
Q Consensus 224 ----------------------------------------------------------------------~~~~~~~~~~ 233 (487)
+...+.|.+.
T Consensus 430 ~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll 509 (923)
T KOG0387|consen 430 VALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLL 509 (923)
T ss_pred HHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccc
Confidence 0000111111
Q ss_pred EEE---E--eeC-----chhhHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHH-hCCCceEEecCCCCHHHHHHH
Q 011387 234 YEV---R--YKD-----LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSV 300 (487)
Q Consensus 234 ~~v---~--~~~-----~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~-~~g~~~~~~h~~l~~~~R~~~ 300 (487)
..- . ..+ ....++..+..+++. ..+.++|+|..|+....-+...|. ..|+....+.|..+...|..+
T Consensus 510 ~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~l 589 (923)
T KOG0387|consen 510 DRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKL 589 (923)
T ss_pred cCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHH
Confidence 100 0 000 001344555555543 356799999999999999999998 689999999999999999999
Q ss_pred HHHHhcCCC--cEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEE--Ee---cchHHHHHHH
Q 011387 301 LDDWISSRK--QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY--YG---MDDRRRMEFI 373 (487)
Q Consensus 301 ~~~f~~g~~--~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~--~~---~~d~~~~~~i 373 (487)
.+.|.+++. -.|++|.+.|.|+|+-..+-||.||+.|++++-.|..-||=|.|++-.+++| .+ .+|..+.+.+
T Consensus 590 Vd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI 669 (923)
T KOG0387|consen 590 VDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQI 669 (923)
T ss_pred HHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHH
Confidence 999997763 3688899999999999999999999999999999999999999988777665 33 3355555544
Q ss_pred HH
Q 011387 374 LS 375 (487)
Q Consensus 374 ~~ 375 (487)
-+
T Consensus 670 ~K 671 (923)
T KOG0387|consen 670 FK 671 (923)
T ss_pred HH
Confidence 44
No 131
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.75 E-value=8.3e-16 Score=167.63 Aligned_cols=181 Identities=13% Similarity=0.067 Sum_probs=110.0
Q ss_pred cEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEee--C-----chhhHHHHHHHHHHh--CCCceEEEEe
Q 011387 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK--D-----LLDDAYADLCSVLKA--NGDTCAIVYC 265 (487)
Q Consensus 195 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~--~-----~~~~~~~~l~~~l~~--~~~~~~iIf~ 265 (487)
.+|++|||++-.-..++...+|+.........+...+-...+... . ..+...+.+.+.+.. ..+++++|++
T Consensus 575 ~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLF 654 (820)
T PRK07246 575 KTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLF 654 (820)
T ss_pred eEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 578999999621112367778876443332222222211112111 1 012222233333211 3456899999
Q ss_pred cccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccC--CCcEEEEeCCCC------
Q 011387 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--DVRLVCHFNIPK------ 337 (487)
Q Consensus 266 ~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip--~v~~VI~~~~p~------ 337 (487)
+|.+..+.+++.|......+ ...|.-. .+.+++++|++++..||++|..|.+|||+| +...||...+|-
T Consensus 655 tS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP 731 (820)
T PRK07246 655 NSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDP 731 (820)
T ss_pred CcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCH
Confidence 99999999999997665444 4434222 246689999998889999999999999997 356677777762
Q ss_pred ------------------------CHHHHHHHHhccCCCCCCceEEEEEecc--hHHHHHHHHHhcc
Q 011387 338 ------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD--DRRRMEFILSKNQ 378 (487)
Q Consensus 338 ------------------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~--d~~~~~~i~~~~~ 378 (487)
-.-.+.|-+||.=|....--+++++++. ...+-+.+++...
T Consensus 732 ~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 732 FVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred HHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhCC
Confidence 1233479999999976544455566554 3334455555443
No 132
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.73 E-value=1.5e-16 Score=169.27 Aligned_cols=316 Identities=19% Similarity=0.199 Sum_probs=215.9
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEcCCCchhhH---HHH---HhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceE
Q 011387 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSM---CYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l----~~~dvlv~apTGsGKTl---~~~---lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~ 106 (487)
.++|.+|.+.++.++ .++++++.-..|-|||+ +|+ .-.....|..|||+|+..+.+-+.+...-....++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~~mn~i 448 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETWTDMNVI 448 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHHhhhcee
Confidence 579999999988765 67899999999999995 333 33334578899999997776543332222356667
Q ss_pred EecCCCCHHHHHHHHHHHhcCC---CcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHH
Q 011387 107 FLSSTQTMQVKTKIYEDLDSGK---PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (487)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~---~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~ 183 (487)
.+++..........+.-..... -.++++++|.|++.... ..+..-.+.+++|||||++-... ..
T Consensus 449 ~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk------~~L~~i~w~~~~vDeahrLkN~~-------~~ 515 (1373)
T KOG0384|consen 449 VYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK------AELSKIPWRYLLVDEAHRLKNDE-------SK 515 (1373)
T ss_pred eeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH------hhhccCCcceeeecHHhhcCchH-------HH
Confidence 7766665544434343333331 24677777777664321 12222347889999999986522 23
Q ss_pred HHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC-------------------------------------
Q 011387 184 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------------------------------------- 226 (487)
Q Consensus 184 l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~------------------------------------- 226 (487)
+-.....|..-..+++|+||-.+....++..++...|.-+...
T Consensus 516 l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks 595 (1373)
T KOG0384|consen 516 LYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS 595 (1373)
T ss_pred HHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC
Confidence 3333445555567999999988877777776654433322100
Q ss_pred -CCCCcceEEEEeeCch-----------------------------------------------h---hHH------HHH
Q 011387 227 -FNRPNLFYEVRYKDLL-----------------------------------------------D---DAY------ADL 249 (487)
Q Consensus 227 -~~~~~~~~~v~~~~~~-----------------------------------------------~---~~~------~~l 249 (487)
...+...+.|.-.+.. + ... ..|
T Consensus 596 lp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L 675 (1373)
T KOG0384|consen 596 LPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEAL 675 (1373)
T ss_pred CCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHH
Confidence 0000111111110000 0 001 112
Q ss_pred HHHHHh---------------CCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc---CCCcE
Q 011387 250 CSVLKA---------------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS---SRKQV 311 (487)
Q Consensus 250 ~~~l~~---------------~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~---g~~~v 311 (487)
..+|.. ..|.++|||.+-.....-|+++|..++++.--+.|+...+.|.+.++.|.. ...-.
T Consensus 676 ~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvF 755 (1373)
T KOG0384|consen 676 QALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVF 755 (1373)
T ss_pred HHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEE
Confidence 222221 256899999999999999999999999999999999999999999999985 45779
Q ss_pred EEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEE--EEecc
Q 011387 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL--YYGMD 365 (487)
Q Consensus 312 LVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~--~~~~~ 365 (487)
|.||.|.|.|||+...+.||+||..|++.+-+|...||.|-|+...+-+ |++..
T Consensus 756 LLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 756 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred EEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 9999999999999999999999999999999999999999998877544 45544
No 133
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.71 E-value=1.2e-15 Score=159.69 Aligned_cols=311 Identities=17% Similarity=0.077 Sum_probs=191.9
Q ss_pred CCcHHHHHHHHHHHcC----------CCEEEEcCCCchhhHHH--HHhHhcC---C-----CeEEEeCcHHHHHHHHHHH
Q 011387 38 QFRDKQLDAIQAVLSG----------RDCFCLMPTGGGKSMCY--QIPALAK---P-----GIVLVVSPLIALMENQVIG 97 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~----------~dvlv~apTGsGKTl~~--~lp~l~~---~-----~~~lvl~P~~~L~~q~~~~ 97 (487)
.++|+|++.+..+.++ ..+++.-..|+|||+-. .+..+.+ . .+.|||+|. +|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 5999999999876431 23555558999999742 2333332 3 679999997 788999999
Q ss_pred HHHcCC----ceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEecccccccc
Q 011387 98 LKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (487)
Q Consensus 98 l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~ 173 (487)
+.+..+ ......+.... .......+..- .--.+.+|..+.+..-+.......-...++++|.||.|.+-..
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~--~w~~~~sil~~---~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS--SWIKLKSILFL---GYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHhccccccceeeeecccch--hhhhhHHHHHh---hhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccch
Confidence 888433 22222222221 00001111100 1123444555555554444445555677999999999997542
Q ss_pred CCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCC------CC------------------
Q 011387 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF------NR------------------ 229 (487)
Q Consensus 174 g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~------~~------------------ 229 (487)
. ..+........-...|++|+|+-.+...++.+.+++..|.++.... ..
T Consensus 392 ~-------s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~ 464 (776)
T KOG0390|consen 392 D-------SLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRERE 464 (776)
T ss_pred h-------hHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhH
Confidence 2 3333344445556689999999888888888877776665442110 00
Q ss_pred --------------------------CcceEEEEeeCch---h-------------------------------------
Q 011387 230 --------------------------PNLFYEVRYKDLL---D------------------------------------- 243 (487)
Q Consensus 230 --------------------------~~~~~~v~~~~~~---~------------------------------------- 243 (487)
|..+..+...... .
T Consensus 465 ~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~ 544 (776)
T KOG0390|consen 465 ERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLL 544 (776)
T ss_pred HHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhc
Confidence 0011111100000 0
Q ss_pred ---------------------------------hHHHHHHHHH---HhCCCceEEEEecccchHHHHHHHHHhCCCceEE
Q 011387 244 ---------------------------------DAYADLCSVL---KANGDTCAIVYCLERTTCDELSAYLSAGGISCAA 287 (487)
Q Consensus 244 ---------------------------------~~~~~l~~~l---~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~ 287 (487)
.++..|..++ ++....++.+..|-+...+.+.+...-.|..+..
T Consensus 545 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~r 624 (776)
T KOG0390|consen 545 LCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLR 624 (776)
T ss_pred ccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEE
Confidence 1111111111 1111122222223333333344444446899999
Q ss_pred ecCCCCHHHHHHHHHHHhcCC---CcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEE
Q 011387 288 YHAGLNDKARSSVLDDWISSR---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (487)
Q Consensus 288 ~h~~l~~~~R~~~~~~f~~g~---~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 361 (487)
+||.++..+|..+++.|.+-. .-.|.+|-|.|.||++=+.+.||.+|++|++..-.|.++||=|+|++-.|++|
T Consensus 625 LdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 625 LDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999999998743 33667788999999999999999999999999999999999999999888877
No 134
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.70 E-value=6.6e-15 Score=155.89 Aligned_cols=289 Identities=15% Similarity=0.031 Sum_probs=191.3
Q ss_pred EcCCCchhhHHHHHhH---hcCCCeEEEeCcHHHHHHHHHHHHHH-cC-CceEEecCCCCHHHHHHHHHHHhcCCCcccE
Q 011387 59 LMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KG-IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133 (487)
Q Consensus 59 ~apTGsGKTl~~~lp~---l~~~~~~lvl~P~~~L~~q~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 133 (487)
.+.+|||||.+|+-.+ +..++.+||++|.++|..|..+++++ +| .....+++..+..++...|..+..+. .+|
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~--~~I 243 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ--ARV 243 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC--CcE
Confidence 3346999999997443 56788999999999999999999998 55 67889999999999999999988876 889
Q ss_pred EEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccC-CCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHH
Q 011387 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG-HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (487)
Q Consensus 134 l~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g-~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~ 212 (487)
+++|..-+..|- .++++|||||-|.-+--. ...+..-+.+..++....+.++++.|||++-+....+.
T Consensus 244 ViGtRSAvFaP~-----------~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~ 312 (665)
T PRK14873 244 VVGTRSAVFAPV-----------EDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALVE 312 (665)
T ss_pred EEEcceeEEecc-----------CCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHh
Confidence 999988887773 579999999999764311 11233336777788888899999999999987765433
Q ss_pred HHhcC-C--CCeEEecCCCCCcceEEEEee-----C-------chhhHHHHHHHHHHhCCCceEEEEecccch-------
Q 011387 213 ESLCL-Q--NPLVLKSSFNRPNLFYEVRYK-----D-------LLDDAYADLCSVLKANGDTCAIVYCLERTT------- 270 (487)
Q Consensus 213 ~~l~~-~--~~~~~~~~~~~~~~~~~v~~~-----~-------~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~------- 270 (487)
..... . ..... ....|.+...-... + .....++.+.+.++ .+ ++|||.|.+-.
T Consensus 313 ~g~~~~~~~~~~~~--~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~--~g-qvll~lnRrGyap~l~C~ 387 (665)
T PRK14873 313 SGWAHDLVAPRPVV--RARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALE--HG-PVLVQVPRRGYVPSLACA 387 (665)
T ss_pred cCcceeeccccccc--cCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHh--cC-cEEEEecCCCCCCeeEhh
Confidence 21100 0 00001 11123322211100 0 11123333333333 34 89999888822
Q ss_pred ----------------------------------------------------HHHHHHHHHhCC--CceEEecCCCCHHH
Q 011387 271 ----------------------------------------------------CDELSAYLSAGG--ISCAAYHAGLNDKA 296 (487)
Q Consensus 271 ----------------------------------------------------~~~l~~~L~~~g--~~~~~~h~~l~~~~ 296 (487)
+|++++.|.+.- .++..+.
T Consensus 388 ~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d------- 460 (665)
T PRK14873 388 RCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSG------- 460 (665)
T ss_pred hCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEC-------
Confidence 266666666542 2333322
Q ss_pred HHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCC------------CHHHHHHHHhccCCCCCCceEEEEEec
Q 011387 297 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAFYQESGRAGRDQLPSKSLLYYGM 364 (487)
Q Consensus 297 R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~------------s~~~y~Qr~GRagR~g~~g~~i~~~~~ 364 (487)
+..+++.|. ++.+|||+|+.+..=+. ++++.|+..|... ....+.|-+||+||.+.+|.+++...+
T Consensus 461 ~d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p 538 (665)
T PRK14873 461 GDQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAES 538 (665)
T ss_pred hHHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCC
Confidence 234788886 59999999993222222 4678887666431 345568999999999999999988755
Q ss_pred chHHHHHHHHH
Q 011387 365 DDRRRMEFILS 375 (487)
Q Consensus 365 ~d~~~~~~i~~ 375 (487)
+. ..++.+.+
T Consensus 539 ~~-~~~~~l~~ 548 (665)
T PRK14873 539 SL-PTVQALIR 548 (665)
T ss_pred CC-HHHHHHHh
Confidence 54 33444443
No 135
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.69 E-value=2.3e-15 Score=153.94 Aligned_cols=322 Identities=20% Similarity=0.197 Sum_probs=221.9
Q ss_pred CCCCCcHHHHHHHHHHH----cCCCEEEEcCCCchhhHHH--HHhHhc---CCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 011387 35 GHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCY--QIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (487)
Q Consensus 35 g~~~~~~~Q~~~i~~~l----~~~dvlv~apTGsGKTl~~--~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~~~~~~ 105 (487)
|+ ++.++|.-.++.+. .+-+.++.-..|-|||.-. .+..|. ..+.-|||||...| +.|.+++.++.-..
T Consensus 397 ~i-~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPsl 474 (941)
T KOG0389|consen 397 GI-QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPSL 474 (941)
T ss_pred CC-cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCce
Confidence 44 38899999888753 3346677779999999422 223332 37889999999666 77888999876555
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHH
Q 011387 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (487)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~ 185 (487)
.+..-..+..++..+...+......++++++|...+++..-- .+.....+++++|+||+|.+-..+. ..|..|-
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdD---Rsflk~~~~n~viyDEgHmLKN~~S---eRy~~LM 548 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDD---RSFLKNQKFNYVIYDEGHMLKNRTS---ERYKHLM 548 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHH---HHHHHhccccEEEecchhhhhccch---HHHHHhc
Confidence 555545555788888888888888999999999988764322 2223344689999999999987552 2233332
Q ss_pred HHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCC-------------------------------------
Q 011387 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN------------------------------------- 228 (487)
Q Consensus 186 ~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~------------------------------------- 228 (487)
.+ +.-..+++|+||-.+...+++..|..--|.++..+..
T Consensus 549 ~I----~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFI 624 (941)
T KOG0389|consen 549 SI----NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFI 624 (941)
T ss_pred cc----cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHH
Confidence 22 3445799999987665555544443322222210000
Q ss_pred -----------CCcceEEEEeeCch-------------------------------------------------------
Q 011387 229 -----------RPNLFYEVRYKDLL------------------------------------------------------- 242 (487)
Q Consensus 229 -----------~~~~~~~v~~~~~~------------------------------------------------------- 242 (487)
.|.-...+.+....
T Consensus 625 LRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L 704 (941)
T KOG0389|consen 625 LRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKL 704 (941)
T ss_pred HHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHH
Confidence 00000000000000
Q ss_pred -------------------------------------------------------hhHHHHHHHHHHh--CCCceEEEEe
Q 011387 243 -------------------------------------------------------DDAYADLCSVLKA--NGDTCAIVYC 265 (487)
Q Consensus 243 -------------------------------------------------------~~~~~~l~~~l~~--~~~~~~iIf~ 265 (487)
..++..|..+|.. ..|.+++||.
T Consensus 705 ~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFS 784 (941)
T KOG0389|consen 705 RKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFS 784 (941)
T ss_pred HHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEee
Confidence 0222233333332 2468999999
Q ss_pred cccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC--CcEEEEcCccccccccCCCcEEEEeCCCCCHHHHH
Q 011387 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFY 343 (487)
Q Consensus 266 ~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~--~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~ 343 (487)
.-.....-|...|..+++....+.|...-.+|..++..|...+ .-.|.+|-|.|.|||+-..++||.+|+.-++-.-.
T Consensus 785 QFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~ 864 (941)
T KOG0389|consen 785 QFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDK 864 (941)
T ss_pred HHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccc
Confidence 9999999999999999999999999999999999999998654 35788999999999999999999999999999999
Q ss_pred HHHhccCCCCCCceE--EEEEecchHH
Q 011387 344 QESGRAGRDQLPSKS--LLYYGMDDRR 368 (487)
Q Consensus 344 Qr~GRagR~g~~g~~--i~~~~~~d~~ 368 (487)
|.--||.|.|+.-.+ +-+++.+-+.
T Consensus 865 QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 865 QAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred hhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 999999999976544 4456666544
No 136
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.69 E-value=4.4e-14 Score=156.90 Aligned_cols=184 Identities=14% Similarity=0.160 Sum_probs=115.2
Q ss_pred cEEEEecCCChH-HHHHHHHHhcCCCC----eEEecCCCCC-cceEEEEe-eC-----chhhHHHHHHHHHH---hCCCc
Q 011387 195 PILALTATAAPK-VQKDVMESLCLQNP----LVLKSSFNRP-NLFYEVRY-KD-----LLDDAYADLCSVLK---ANGDT 259 (487)
Q Consensus 195 ~~i~lSAT~~~~-~~~~i~~~l~~~~~----~~~~~~~~~~-~~~~~v~~-~~-----~~~~~~~~l~~~l~---~~~~~ 259 (487)
++|++|||++.. ....+...+|+.+. ..+.++|+.. +...-+.. .. ..+.....+.+.+. ...++
T Consensus 674 ~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~~~g 753 (928)
T PRK08074 674 SVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKATKG 753 (928)
T ss_pred cEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHhCCC
Confidence 478889998743 23445667787532 2333444432 22222211 11 01222334333332 22455
Q ss_pred eEEEEecccchHHHHHHHHHhCCC--ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCC--CcEEEEeCC
Q 011387 260 CAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD--VRLVCHFNI 335 (487)
Q Consensus 260 ~~iIf~~s~~~~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~--v~~VI~~~~ 335 (487)
+++|+++|.+..+.+++.|..... ....+.-+++...|.++++.|++++-.||++|..|.+|||+|+ ++.||...+
T Consensus 754 ~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kL 833 (928)
T PRK08074 754 RMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRL 833 (928)
T ss_pred CEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecC
Confidence 799999999999999999976432 1222333444456789999999998899999999999999996 588998887
Q ss_pred CC------------------------------CHHHHHHHHhccCCCCCCceEEEEEecc--hHHHHHHHHHhcc
Q 011387 336 PK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD--DRRRMEFILSKNQ 378 (487)
Q Consensus 336 p~------------------------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~--d~~~~~~i~~~~~ 378 (487)
|- -.-.+.|.+||.-|....--+++++++. ...+-+.+++...
T Consensus 834 PF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 834 PFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 73 1122378899999987554456666655 3344455555543
No 137
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=6e-15 Score=143.43 Aligned_cols=325 Identities=16% Similarity=0.173 Sum_probs=198.1
Q ss_pred cccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhH------hcCCCeEEEeC
Q 011387 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA------LAKPGIVLVVS 85 (487)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~------l~~~~~~lvl~ 85 (487)
...++|...+.++.-.+.|++.-... .+..+.+.+..+.+++-+++++.||||||. ++|. +.....+..-.
T Consensus 22 k~~Npf~~~p~s~rY~~ilk~R~~LP-vw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~~~~~v~CTQ 98 (699)
T KOG0925|consen 22 KAINPFNGKPYSQRYYDILKKRRELP-VWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELSHLTGVACTQ 98 (699)
T ss_pred hhcCCCCCCcCcHHHHHHHHHHhcCc-hHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHhhccceeecC
Confidence 34667788888888899998753321 333445566667778888999999999995 3332 22246677777
Q ss_pred cHHHHHHHHHHHHHH-cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhH-HHHHhhhhcCCccEEE
Q 011387 86 PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLKKIHSRGLLNLVA 163 (487)
Q Consensus 86 P~~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~-~~l~~~~~~~~l~~lV 163 (487)
|.+.-+.+...+... +.+....-.+.... .++..+ +..-+ ...|.+.+ ........++..++||
T Consensus 99 prrvaamsva~RVadEMDv~lG~EVGysIr------fEdC~~--~~T~L------ky~tDgmLlrEams~p~l~~y~vii 164 (699)
T KOG0925|consen 99 PRRVAAMSVAQRVADEMDVTLGEEVGYSIR------FEDCTS--PNTLL------KYCTDGMLLREAMSDPLLGRYGVII 164 (699)
T ss_pred chHHHHHHHHHHHHHHhccccchhcccccc------ccccCC--hhHHH------HHhcchHHHHHHhhCcccccccEEE
Confidence 998888777766543 21111100000000 000000 00101 22343322 2233444567789999
Q ss_pred EeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEE-eeCch
Q 011387 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR-YKDLL 242 (487)
Q Consensus 164 iDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~-~~~~~ 242 (487)
+||||.-.--. .-.+.-|..+...-|+..++.+|||....-.+ ....+.|.+-..+...-.++|.-. ..+..
T Consensus 165 LDeahERtlAT---DiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq----~yf~n~Pll~vpg~~PvEi~Yt~e~erDyl 237 (699)
T KOG0925|consen 165 LDEAHERTLAT---DILMGLLKEVVRNRPDLKLVVMSATLDAEKFQ----RYFGNAPLLAVPGTHPVEIFYTPEPERDYL 237 (699)
T ss_pred echhhhhhHHH---HHHHHHHHHHHhhCCCceEEEeecccchHHHH----HHhCCCCeeecCCCCceEEEecCCCChhHH
Confidence 99999743100 01112355566666899999999999765433 333344544433333333333222 22333
Q ss_pred hhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHh----C-----CCceEEecCCCCHHHHHHHHHHHh---cC--C
Q 011387 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA----G-----GISCAAYHAGLNDKARSSVLDDWI---SS--R 308 (487)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~----~-----g~~~~~~h~~l~~~~R~~~~~~f~---~g--~ 308 (487)
+..+..++++......+-++||....++.+..++.+.. . .+.+..+| +.++..+++.-. +| .
T Consensus 238 EaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~ 313 (699)
T KOG0925|consen 238 EAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYG 313 (699)
T ss_pred HHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCcc
Confidence 44555555555555566799999999888877777763 2 24677788 333333333221 12 3
Q ss_pred CcEEEEcCccccccccCCCcEEEEeCCC------------------CCHHHHHHHHhccCCCCCCceEEEEEecc
Q 011387 309 KQVVVATVAFGMGIDRKDVRLVCHFNIP------------------KSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (487)
Q Consensus 309 ~~vLVaT~~~~~GiDip~v~~VI~~~~p------------------~s~~~y~Qr~GRagR~g~~g~~i~~~~~~ 365 (487)
.+|+|+|+.++..+-++.+.+||.-++. -|..+-.||.|||||. ++|.|.-+|+.+
T Consensus 314 RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 314 RKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred ceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 5799999999999999999999976653 3788899999999997 699999999754
No 138
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.66 E-value=4.2e-16 Score=151.75 Aligned_cols=289 Identities=18% Similarity=0.169 Sum_probs=184.2
Q ss_pred CCCcHHHHHHHHHHHcC---CCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHc-CCc---eEEec
Q 011387 37 AQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK-GIA---GEFLS 109 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~---~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~-~~~---~~~~~ 109 (487)
..+||+|++++..+..+ +.-+++.|+|+|||++-.-.+..-.+.+||++..---++||..+++.. .+. ....+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFT 380 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFT 380 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEee
Confidence 46899999999998754 678999999999999987777777889999998888888887777653 111 11222
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhh----HHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHH
Q 011387 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF----MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (487)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~----~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~ 185 (487)
+.... .......+++.|..+++..+. ...+.+......++++++||+|.+-..- ||.....+.
T Consensus 381 sd~Ke-----------~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~M--FRRVlsiv~ 447 (776)
T KOG1123|consen 381 SDAKE-----------RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKM--FRRVLSIVQ 447 (776)
T ss_pred ccccc-----------cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHH--HHHHHHHHH
Confidence 21110 011236688888888875332 1233455556779999999999986532 443322221
Q ss_pred HHHHhCCCCcEEEEecCCChHHHHHHHHHhc-CCCCeEEe-------------------------cCCCCCcceEEEEee
Q 011387 186 SLRNYLPDVPILALTATAAPKVQKDVMESLC-LQNPLVLK-------------------------SSFNRPNLFYEVRYK 239 (487)
Q Consensus 186 ~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~-~~~~~~~~-------------------------~~~~~~~~~~~v~~~ 239 (487)
. .--+++|||+-.+..+ +..|+ +-.|.++. ..|.+..+......+
T Consensus 448 ---a----HcKLGLTATLvREDdK--I~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 448 ---A----HCKLGLTATLVREDDK--ITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred ---H----HhhccceeEEeecccc--ccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 2 2248999997554321 11111 11111111 001111111000000
Q ss_pred ----CchhhHH---HHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc-CCCcE
Q 011387 240 ----DLLDDAY---ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS-SRKQV 311 (487)
Q Consensus 240 ----~~~~~~~---~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~v 311 (487)
.....++ +.|.++-.. .+.++|||..+.-.....|-.|.+ -++.|..++.+|.++++.|+. ..++-
T Consensus 519 ~lLyvMNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNT 592 (776)
T KOG1123|consen 519 MLLYVMNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNT 592 (776)
T ss_pred heeeecCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccce
Confidence 0012233 334443333 678899998876655555554433 478899999999999999985 56889
Q ss_pred EEEcCccccccccCCCcEEEEeCCC-CCHHHHHHHHhccCCCC
Q 011387 312 VVATVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQ 353 (487)
Q Consensus 312 LVaT~~~~~GiDip~v~~VI~~~~p-~s~~~y~Qr~GRagR~g 353 (487)
++-+.+....||+|..+++|..+.- .|-.+=.||.||.-|..
T Consensus 593 IFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 593 IFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred EEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 9999999999999999999977653 47788899999887753
No 139
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.64 E-value=6e-15 Score=134.52 Aligned_cols=165 Identities=33% Similarity=0.425 Sum_probs=112.7
Q ss_pred cCCCCCcHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHHHhHhcC-----CCeEEEeCcHHHHHHHHHHHHHHcC-----
Q 011387 34 FGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEKG----- 102 (487)
Q Consensus 34 fg~~~~~~~Q~~~i~~~l~~-~dvlv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~~L~~q~~~~l~~~~----- 102 (487)
+++..++++|.++++.+... +.+++.+|||+|||.++..+++.. ..+++|++|+.+++.|+.+.+....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 57788999999999999998 999999999999999887776643 3679999999999999999998754
Q ss_pred CceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhh--hhcCCccEEEEeccccccccCCCChHH
Q 011387 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAIDEAHCISSWGHDFRPS 180 (487)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~--~~~~~l~~lViDEah~~~~~g~~f~~~ 180 (487)
.....+.+.... ..+....... .+++++|++.+ ...... .....++++|+||||.+..+. +.
T Consensus 84 ~~~~~~~~~~~~----~~~~~~~~~~--~~v~~~t~~~l------~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~-- 147 (201)
T smart00487 84 KVVGLYGGDSKR----EQLRKLESGK--TDILVTTPGRL------LDLLENDLLELSNVDLVILDEAHRLLDGG--FG-- 147 (201)
T ss_pred EEEEEeCCcchH----HHHHHHhcCC--CCEEEeChHHH------HHHHHcCCcCHhHCCEEEEECHHHHhcCC--cH--
Confidence 223333332221 1222222221 36655555433 222222 344568899999999998642 33
Q ss_pred HHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHh
Q 011387 181 YRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (487)
Q Consensus 181 ~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l 215 (487)
..+..+.... +..+++++|||+++..........
T Consensus 148 -~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 148 -DQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred -HHHHHHHHhCCccceEEEEecCCchhHHHHHHHhc
Confidence 3333444444 578899999999877666444444
No 140
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.63 E-value=1.7e-15 Score=117.63 Aligned_cols=81 Identities=35% Similarity=0.534 Sum_probs=77.8
Q ss_pred HHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCC
Q 011387 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (487)
Q Consensus 273 ~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~ 352 (487)
.+++.|+..++.+..+||+++.++|..+++.|.++...|||+|+++++|+|+|++++||.++.|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 56788888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 011387 353 Q 353 (487)
Q Consensus 353 g 353 (487)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 141
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.62 E-value=9.6e-15 Score=155.48 Aligned_cols=312 Identities=17% Similarity=0.232 Sum_probs=205.4
Q ss_pred CCcHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHHHhHhcC--CCeEEEeCcHHHHHHHHHHHHHH-----cCCceEEec
Q 011387 38 QFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--PGIVLVVSPLIALMENQVIGLKE-----KGIAGEFLS 109 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~-~dvlv~apTGsGKTl~~~lp~l~~--~~~~lvl~P~~~L~~q~~~~l~~-----~~~~~~~~~ 109 (487)
.+.|+|.++++.+.+. .+++|.+|+|||||.|+-+..+.. .++++++.|.-+.+..++..|.+ .|.....+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 4588999999988754 678999999999999998888875 67899999999999888877766 255556666
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHH---HHH
Q 011387 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK---LSS 186 (487)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~---l~~ 186 (487)
+..+.+.+-.. .-++ ++.||..++.+. ....++++|.||.|.+... +.+.|.- +..
T Consensus 1223 ge~s~~lkl~~---------~~~v------ii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~---~g~v~evi~S~r~ 1281 (1674)
T KOG0951|consen 1223 GETSLDLKLLQ---------KGQV------IISTPEQWDLLQ---SIQQVDLFIVDELHLIGGV---YGAVYEVICSMRY 1281 (1674)
T ss_pred CccccchHHhh---------hcce------EEechhHHHHHh---hhhhcceEeeehhhhhccc---CCceEEEEeeHHH
Confidence 55544432111 1345 455555555553 3456899999999998742 1222211 222
Q ss_pred HHHhC-CCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCc--ceEEEEeeC--chhhH----HHHHHHHHHhC-
Q 011387 187 LRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN--LFYEVRYKD--LLDDA----YADLCSVLKAN- 256 (487)
Q Consensus 187 l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~--~~~~v~~~~--~~~~~----~~~l~~~l~~~- 256 (487)
+...+ .+++++++|...++. +++ ++.....++..++++.. +..++...+ ..+.. .+.....+..+
T Consensus 1282 ia~q~~k~ir~v~ls~~lana--~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a 1356 (1674)
T KOG0951|consen 1282 IASQLEKKIRVVALSSSLANA--RDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA 1356 (1674)
T ss_pred HHHHHHhheeEEEeehhhccc--hhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh
Confidence 22222 267899999887655 333 66666666655443322 222222221 11111 11122222222
Q ss_pred -CCceEEEEecccchHHHHHHHHHhC----------------------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 011387 257 -GDTCAIVYCLERTTCDELSAYLSAG----------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (487)
Q Consensus 257 -~~~~~iIf~~s~~~~~~l~~~L~~~----------------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLV 313 (487)
.+++++||+++++.|..++..|-.. .++...=|-+++..+..-+...|..|.++|+|
T Consensus 1357 ~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v 1436 (1674)
T KOG0951|consen 1357 GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCV 1436 (1674)
T ss_pred cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEE
Confidence 5678999999999998777544210 11112228899999999999999999999999
Q ss_pred EcCccccccccCCCcEEE----EeC------CCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhccc
Q 011387 314 ATVAFGMGIDRKDVRLVC----HFN------IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (487)
Q Consensus 314 aT~~~~~GiDip~v~~VI----~~~------~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (487)
...- .+|+-...--+|+ .|| .+.+..+..|+.|+|.| .|.|+++....+..+.+.++.+...
T Consensus 1437 ~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1437 MSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred EEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcCc
Confidence 9877 8888765333333 122 45578999999999988 5899999999999888887766543
No 142
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.62 E-value=5.1e-13 Score=139.91 Aligned_cols=168 Identities=14% Similarity=0.054 Sum_probs=109.5
Q ss_pred cEEEEecCCChHH------HHHHHHHhcCCCCe-EEecCCC----CCc--ceEEEEe-----eCch--------------
Q 011387 195 PILALTATAAPKV------QKDVMESLCLQNPL-VLKSSFN----RPN--LFYEVRY-----KDLL-------------- 242 (487)
Q Consensus 195 ~~i~lSAT~~~~~------~~~i~~~l~~~~~~-~~~~~~~----~~~--~~~~v~~-----~~~~-------------- 242 (487)
++|+.|||+.-.- ...+.+.+|+.... .+.++|+ +.. +.|.-.. .+..
T Consensus 373 ~~I~TSATL~v~~~~~~~~F~~f~~~lGL~~~~l~~~SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~~~~~~~~~~~~~ 452 (636)
T TIGR03117 373 GAIIVSATLYLPDRFGQMSCDYLKRVLSLPLSRLDTPSPIVAPWVRNAIPHLHVPNAKARFLRPVGKDEQGDANLQEAER 452 (636)
T ss_pred eEEEEccccccCCcCCCcCcHHHHHhcCCCccceeCCCCCCchhHhcCceEEEEcCccccCCCCCCCCcccchhhhcchh
Confidence 5899999987643 67788888886442 3345666 333 2221100 0101
Q ss_pred ---hhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc----CCCcEEEEc
Q 011387 243 ---DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS----SRKQVVVAT 315 (487)
Q Consensus 243 ---~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~----g~~~vLVaT 315 (487)
+...+.+..++.... +.++|.+.|....+.+++.|...-.-...+.|..+ .+..++++|+. |...||++|
T Consensus 453 ~~~~~~~~~~~~~~~~~~-G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt 529 (636)
T TIGR03117 453 TWLENVSLSTAAILRKAQ-GGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAA 529 (636)
T ss_pred hHHHHHHHHHHHHHHHcC-CCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeC
Confidence 113345555555544 46899999999999999999764223345555443 34567888886 478999999
Q ss_pred Ccccccccc--------C--CCcEEEEeCCCC-------------------------CHHHHHHHHhccCCCCCC--ceE
Q 011387 316 VAFGMGIDR--------K--DVRLVCHFNIPK-------------------------SMEAFYQESGRAGRDQLP--SKS 358 (487)
Q Consensus 316 ~~~~~GiDi--------p--~v~~VI~~~~p~-------------------------s~~~y~Qr~GRagR~g~~--g~~ 358 (487)
+.|.+|||+ | .++.||+..+|- ..-.+.|-+||.-|.... --.
T Consensus 530 ~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~ 609 (636)
T TIGR03117 530 GGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRR 609 (636)
T ss_pred CccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceE
Confidence 999999999 2 488999888872 122346888998887654 334
Q ss_pred EEEEecc
Q 011387 359 LLYYGMD 365 (487)
Q Consensus 359 i~~~~~~ 365 (487)
+.++++.
T Consensus 610 i~ilD~R 616 (636)
T TIGR03117 610 IHMLDGR 616 (636)
T ss_pred EEEEeCC
Confidence 5555554
No 143
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=3.3e-13 Score=144.09 Aligned_cols=122 Identities=23% Similarity=0.216 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHhC--CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccc
Q 011387 244 DAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (487)
Q Consensus 244 ~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~G 321 (487)
.++..+.+.+... .+.|+||-+.|.+..+.++..|...|++.-.+++.....+-.-+-+.= -...|-|||+++|||
T Consensus 612 eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG--~~GaVTIATNMAGRG 689 (1112)
T PRK12901 612 EKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAG--QPGTVTIATNMAGRG 689 (1112)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcC--CCCcEEEeccCcCCC
Confidence 4555566555443 789999999999999999999999999877787775544443333322 235699999999999
Q ss_pred cccC--------CCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchH
Q 011387 322 IDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (487)
Q Consensus 322 iDip--------~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~ 367 (487)
-||. +--+||-...+.|..---|..||+||.|.||.+..|++-+|.
T Consensus 690 TDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 690 TDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred cCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 9987 446899999999999999999999999999999999998764
No 144
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.57 E-value=2.1e-12 Score=139.18 Aligned_cols=164 Identities=18% Similarity=0.151 Sum_probs=103.0
Q ss_pred EEEEecCCChH-HHHHHHHHhcCCC---Ce--EEecCCCCCcceEEEEee---C--chhhHH----HHHHHHHHhCCCce
Q 011387 196 ILALTATAAPK-VQKDVMESLCLQN---PL--VLKSSFNRPNLFYEVRYK---D--LLDDAY----ADLCSVLKANGDTC 260 (487)
Q Consensus 196 ~i~lSAT~~~~-~~~~i~~~l~~~~---~~--~~~~~~~~~~~~~~v~~~---~--~~~~~~----~~l~~~l~~~~~~~ 260 (487)
+|++|||+++. ....+.+.+|+.. .. .+.++++..+...-+... . ..+... +.+.+++. .++ .
T Consensus 459 vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~-~~g-g 536 (697)
T PRK11747 459 AVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE-KHK-G 536 (697)
T ss_pred EEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh-cCC-C
Confidence 68888888763 3455667778753 22 233444432222111111 1 112223 33444444 333 4
Q ss_pred EEEEecccchHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHh----cCCCcEEEEcCccccccccCC--CcEEEEe
Q 011387 261 AIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWI----SSRKQVVVATVAFGMGIDRKD--VRLVCHF 333 (487)
Q Consensus 261 ~iIf~~s~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~----~g~~~vLVaT~~~~~GiDip~--v~~VI~~ 333 (487)
++|+++|.+..+.+++.|... +.. ...++. ..|.++++.|+ .|+..||++|..|.+|||+|+ +++||..
T Consensus 537 ~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~ 612 (697)
T PRK11747 537 SLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIIT 612 (697)
T ss_pred EEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEE
Confidence 899999999999999999743 333 344553 24667887776 467789999999999999996 7899998
Q ss_pred CCCC----CH--------------------------HHHHHHHhccCCCCCCceEEEEEecc
Q 011387 334 NIPK----SM--------------------------EAFYQESGRAGRDQLPSKSLLYYGMD 365 (487)
Q Consensus 334 ~~p~----s~--------------------------~~y~Qr~GRagR~g~~g~~i~~~~~~ 365 (487)
.+|- ++ -.+.|.+||.-|....--.++++++.
T Consensus 613 kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 613 KIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 8773 11 12368889999976544455555544
No 145
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.56 E-value=1.2e-14 Score=131.32 Aligned_cols=157 Identities=25% Similarity=0.248 Sum_probs=90.4
Q ss_pred CCcHHHHHHHHHHHc-------CCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecC
Q 011387 38 QFRDKQLDAIQAVLS-------GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~-------~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~ 110 (487)
+||++|.+++..+.+ .+++++.+|||+|||.++...+.....++++++|+.+|+.|+.+.+..++........
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~ 82 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFE 82 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 489999999999874 5889999999999999887544433339999999999999999999654332211110
Q ss_pred CCC-----------HHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHH-------HHhhhhcCCccEEEEeccccccc
Q 011387 111 TQT-----------MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-------LKKIHSRGLLNLVAIDEAHCISS 172 (487)
Q Consensus 111 ~~~-----------~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~-------l~~~~~~~~l~~lViDEah~~~~ 172 (487)
... .......... ......++++.+...+........ ..........+++|+||||+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 83 KSIKPAYDSKEFISIQDDISDKSE--SDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS 160 (184)
T ss_dssp --GGGCCE-SEEETTTTEEEHHHH--HCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH
T ss_pred cccccccccccccccccccccccc--cccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC
Confidence 000 0000000011 112234554444443322111000 00112234578999999999754
Q ss_pred cCCCChHHHHHHHHHHHhCCCCcEEEEecCCCh
Q 011387 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (487)
Q Consensus 173 ~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~ 205 (487)
.. .+.. +.. ++...+++|||||.+
T Consensus 161 ~~-----~~~~---i~~-~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 161 DS-----SYRE---IIE-FKAAFILGLTATPFR 184 (184)
T ss_dssp HH-----HHHH---HHH-SSCCEEEEEESS-S-
T ss_pred HH-----HHHH---HHc-CCCCeEEEEEeCccC
Confidence 11 1233 333 677889999999863
No 146
>COG4889 Predicted helicase [General function prediction only]
Probab=99.55 E-value=1.9e-14 Score=148.20 Aligned_cols=302 Identities=19% Similarity=0.254 Sum_probs=175.4
Q ss_pred CCCcHHHHHHHHHHHcC----CCEEEEcCCCchhhHHHHH-hHhcCCCeEEEeCcHHHHHHHHHHHHHH---cCCceEEe
Q 011387 37 AQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQI-PALAKPGIVLVVSPLIALMENQVIGLKE---KGIAGEFL 108 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~----~dvlv~apTGsGKTl~~~l-p~l~~~~~~lvl~P~~~L~~q~~~~l~~---~~~~~~~~ 108 (487)
.+|||+|+.|+++..+| ..-=++|.+|+|||...+- .--....++|+++|.++|..|+.+++.. +.+.+..+
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aV 239 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAAARILFLVPSISLLSQTLREWTAQKELDFRASAV 239 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhhhheEeecchHHHHHHHHHHHhhccCccceeEEE
Confidence 47999999999998865 2345778899999988752 2222348999999999999999999876 44555555
Q ss_pred cCCCCHHHHH-----------------HHHHHHh--cCCCcccEEEeCcccccChhhHHHHHh--hhhcCCccEEEEecc
Q 011387 109 SSTQTMQVKT-----------------KIYEDLD--SGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEA 167 (487)
Q Consensus 109 ~~~~~~~~~~-----------------~~~~~~~--~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l~~lViDEa 167 (487)
++........ .+..... ......-+ ++.|...+..+.+ ......++++|.|||
T Consensus 240 cSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~v------vFsTYQSl~~i~eAQe~G~~~fDliicDEA 313 (1518)
T COG4889 240 CSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTV------VFSTYQSLPRIKEAQEAGLDEFDLIICDEA 313 (1518)
T ss_pred ecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEE------EEEcccchHHHHHHHHcCCCCccEEEecch
Confidence 5444322110 0111110 01112223 3444444444433 334667999999999
Q ss_pred ccccc---cCCCChHHH------HHHHHHHHhCCCCcEEEEecCCChH---HHHHH----HHHhcCCCCeEEecCCCCCc
Q 011387 168 HCISS---WGHDFRPSY------RKLSSLRNYLPDVPILALTATAAPK---VQKDV----MESLCLQNPLVLKSSFNRPN 231 (487)
Q Consensus 168 h~~~~---~g~~f~~~~------~~l~~l~~~~~~~~~i~lSAT~~~~---~~~~i----~~~l~~~~~~~~~~~~~~~~ 231 (487)
|+-.. -|.+ ...+ ..+. ....+.|||||.-- ..... .....|.+..++...+.|-+
T Consensus 314 HRTtGa~~a~dd-~saFt~vHs~~niK-------a~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~ 385 (1518)
T COG4889 314 HRTTGATLAGDD-KSAFTRVHSDQNIK-------AAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLG 385 (1518)
T ss_pred hccccceecccC-cccceeecCcchhH-------HHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhccc
Confidence 99743 1110 0000 1111 22357888886321 10000 01112222222222222211
Q ss_pred c----------eEEEEee--C---------------chhhHHHHHHH-------HHHhC--------------CCceEEE
Q 011387 232 L----------FYEVRYK--D---------------LLDDAYADLCS-------VLKAN--------------GDTCAIV 263 (487)
Q Consensus 232 ~----------~~~v~~~--~---------------~~~~~~~~l~~-------~l~~~--------------~~~~~iI 263 (487)
. -|.|... + ...-.++.... +.++. +-++.|-
T Consensus 386 FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIa 465 (1518)
T COG4889 386 FGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIA 465 (1518)
T ss_pred HHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHH
Confidence 1 0111110 0 00011111111 11111 2246789
Q ss_pred EecccchHHHHHHHHHh-------------CCC--ceEEecCCCCHHHHHHHHHH---HhcCCCcEEEEcCccccccccC
Q 011387 264 YCLERTTCDELSAYLSA-------------GGI--SCAAYHAGLNDKARSSVLDD---WISSRKQVVVATVAFGMGIDRK 325 (487)
Q Consensus 264 f~~s~~~~~~l~~~L~~-------------~g~--~~~~~h~~l~~~~R~~~~~~---f~~g~~~vLVaT~~~~~GiDip 325 (487)
||.+.++..++++.+.. .++ .+....|.|...+|.+.++. |...+.+||---..+++|||+|
T Consensus 466 F~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVP 545 (1518)
T COG4889 466 FAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVP 545 (1518)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCcc
Confidence 99999998888776642 233 45566688999999655542 3446678887788899999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHhccCCC
Q 011387 326 DVRLVCHFNIPKSMEAFYQESGRAGRD 352 (487)
Q Consensus 326 ~v~~VI~~~~p~s~~~y~Qr~GRagR~ 352 (487)
.++-||.++.-.|+-+.+|.+||+.|-
T Consensus 546 aLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 546 ALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred ccceEEEecCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999994
No 147
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.54 E-value=1.2e-12 Score=141.91 Aligned_cols=167 Identities=20% Similarity=0.205 Sum_probs=106.2
Q ss_pred cEEEEecCCChH-HHHHHHHHhcCCCCe--E-EecCCCCCcceEEEEee---C-----chhhHHHHHHHHHHhCCCceEE
Q 011387 195 PILALTATAAPK-VQKDVMESLCLQNPL--V-LKSSFNRPNLFYEVRYK---D-----LLDDAYADLCSVLKANGDTCAI 262 (487)
Q Consensus 195 ~~i~lSAT~~~~-~~~~i~~~l~~~~~~--~-~~~~~~~~~~~~~v~~~---~-----~~~~~~~~l~~~l~~~~~~~~i 262 (487)
.+|++|||+.+. ....+....+..... . +.+.++........... . ...+....+.++++..++ +++
T Consensus 405 ~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 483 (654)
T COG1199 405 SVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKASPG-GVL 483 (654)
T ss_pred cEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhcCC-CEE
Confidence 488999998764 334455555554433 1 12222332221111111 1 112233344455555555 799
Q ss_pred EEecccchHHHHHHHHHhCCCc-eEEecCCCCHHHHHHHHHHHhcCCC-cEEEEcCccccccccCC--CcEEEEeCCCC-
Q 011387 263 VYCLERTTCDELSAYLSAGGIS-CAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKD--VRLVCHFNIPK- 337 (487)
Q Consensus 263 If~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~~~R~~~~~~f~~g~~-~vLVaT~~~~~GiDip~--v~~VI~~~~p~- 337 (487)
||++|.+..+.+++.+...... ....+|..+ +...++.|..+.- .++|+|..+++|||+|+ .+.||..++|-
T Consensus 484 vlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp 560 (654)
T COG1199 484 VLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFP 560 (654)
T ss_pred EEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCC
Confidence 9999999999999999886653 345555444 3478888876554 89999999999999996 58899888873
Q ss_pred -----------------------------CHHHHHHHHhccCCCCCCceEEEEEecc
Q 011387 338 -----------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (487)
Q Consensus 338 -----------------------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~ 365 (487)
-+-...|.+||+-|.-...-.+++++..
T Consensus 561 ~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 561 NPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred CCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEeccc
Confidence 3345689999999965444444455443
No 148
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.52 E-value=7e-12 Score=136.18 Aligned_cols=70 Identities=21% Similarity=0.285 Sum_probs=60.0
Q ss_pred HHcCCCCCcHHHHHHHHHHH----cCCCEEEEcCCCchhhHHHHHhHhc----CC--CeEEEeCcHHHHHHHHHHHHHHc
Q 011387 32 WHFGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA----KP--GIVLVVSPLIALMENQVIGLKEK 101 (487)
Q Consensus 32 ~~fg~~~~~~~Q~~~i~~~l----~~~dvlv~apTGsGKTl~~~lp~l~----~~--~~~lvl~P~~~L~~q~~~~l~~~ 101 (487)
-.|.|+.+||.|.+.+..+. .+++.++.||||+|||++.+.|++. .+ .++++.+.|.+=..|.++++++.
T Consensus 4 v~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 4 VYFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred eecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 35889989999999886654 6789999999999999998888874 23 68999999999999999999883
No 149
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.51 E-value=1.2e-12 Score=127.91 Aligned_cols=305 Identities=16% Similarity=0.155 Sum_probs=189.3
Q ss_pred CCCcHHHHHHHHHHH-cCCCEEEEcCCCchhhHHHHHhH--hcCCCeEEEeCcHHHHHHHHHHHHHHcC-C-ceEEecCC
Q 011387 37 AQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPA--LAKPGIVLVVSPLIALMENQVIGLKEKG-I-AGEFLSST 111 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l-~~~dvlv~apTGsGKTl~~~lp~--l~~~~~~lvl~P~~~L~~q~~~~l~~~~-~-~~~~~~~~ 111 (487)
+.+-|+|++.+...+ .|..+++.-..|-|||+-++--+ .......+||||. ++-..|.+++..+- . ....+.-.
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPA-svrftWa~al~r~lps~~pi~vv~~ 275 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVDK 275 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecH-HHhHHHHHHHHHhcccccceEEEec
Confidence 468899999887655 56788888899999998665332 2347788999997 45567777777741 1 11111100
Q ss_pred CCHHHHHHHHHHHhcCCCcccEEEeCcc-cccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHh
Q 011387 112 QTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190 (487)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~il~~tpe-~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~ 190 (487)
... ...-+-+.+. .+.+...+..+.+......++++|+||.|.+.+--. -| ......+.+.
T Consensus 276 ~~D---------------~~~~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~skt-kr--~Ka~~dllk~ 337 (689)
T KOG1000|consen 276 SSD---------------PLPDVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKT-KR--TKAATDLLKV 337 (689)
T ss_pred ccC---------------CccccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccch-hh--hhhhhhHHHH
Confidence 000 0000111111 234455555666666667799999999999865211 00 1111111111
Q ss_pred CCCCcEEEEecCCChHHHHHHHHHhcCCCCeE--------------------E--ecCCC--------------------
Q 011387 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLV--------------------L--KSSFN-------------------- 228 (487)
Q Consensus 191 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~--------------------~--~~~~~-------------------- 228 (487)
-..++++|+|+.-.--.++...+...++.+ + ....+
T Consensus 338 --akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~d 415 (689)
T KOG1000|consen 338 --AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKAD 415 (689)
T ss_pred --hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 235899999974211111111110000000 0 00000
Q ss_pred ----CCcceEEEEeeCc--h-----------------------------------hhHHHHHHHHHHh------CCCceE
Q 011387 229 ----RPNLFYEVRYKDL--L-----------------------------------DDAYADLCSVLKA------NGDTCA 261 (487)
Q Consensus 229 ----~~~~~~~v~~~~~--~-----------------------------------~~~~~~l~~~l~~------~~~~~~ 261 (487)
.|.-+..+..... . ..++..+.+++.. .++.+.
T Consensus 416 vL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kf 495 (689)
T KOG1000|consen 416 VLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKF 495 (689)
T ss_pred HHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceE
Confidence 0111111211100 0 0122233444433 367889
Q ss_pred EEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc-CCCcE-EEEcCccccccccCCCcEEEEeCCCCCH
Q 011387 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS-SRKQV-VVATVAFGMGIDRKDVRLVCHFNIPKSM 339 (487)
Q Consensus 262 iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~v-LVaT~~~~~GiDip~v~~VI~~~~p~s~ 339 (487)
+|||......+.+...+.+.++....+.|..+..+|....+.|.. .++.| +++-.++++|+++...+.|+...+++++
T Consensus 496 lVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnP 575 (689)
T KOG1000|consen 496 LVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNP 575 (689)
T ss_pred EEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCC
Confidence 999999999999999999999999999999999999999999985 45554 4455788999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCceEEEEE
Q 011387 340 EAFYQESGRAGRDQLPSKSLLYY 362 (487)
Q Consensus 340 ~~y~Qr~GRagR~g~~g~~i~~~ 362 (487)
.-.+|.--|+.|-|+.+.+.++|
T Consensus 576 gvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 576 GVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred ceEEechhhhhhccccceeeEEE
Confidence 99999999999999887654443
No 150
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.46 E-value=9.9e-13 Score=138.03 Aligned_cols=321 Identities=19% Similarity=0.186 Sum_probs=216.1
Q ss_pred CCcHHHHHHHHHHH---cCC-CEEEEcCCCchhhH------HHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEE
Q 011387 38 QFRDKQLDAIQAVL---SGR-DCFCLMPTGGGKSM------CYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l---~~~-dvlv~apTGsGKTl------~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~ 107 (487)
.++++|...+..+. +|+ +-++.-.+|-|||. +|++-.....|.-+||+|+-.|.+. ..++....-....
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW-~~Ef~kWaPSv~~ 472 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNW-SSEFPKWAPSVQK 472 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCc-hhhccccccceee
Confidence 78999999998765 333 55677799999995 3444455568899999999988764 4444443334444
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChh-hHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHH
Q 011387 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (487)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~-~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~ 186 (487)
+........+......+..++ ++|+.+|.|.+..+. ++. .-.+.++||||.|++..-. ..|..
T Consensus 473 i~YkGtp~~R~~l~~qir~gK--FnVLlTtyEyiikdk~lLs-------KI~W~yMIIDEGHRmKNa~-------~KLt~ 536 (1157)
T KOG0386|consen 473 IQYKGTPQQRSGLTKQQRHGK--FNVLLTTYEYIIKDKALLS-------KISWKYMIIDEGHRMKNAI-------CKLTD 536 (1157)
T ss_pred eeeeCCHHHHhhHHHHHhccc--ceeeeeeHHHhcCCHHHHh-------ccCCcceeecccccccchh-------hHHHH
Confidence 555556677777777777765 899999998776642 222 2247789999999986521 33433
Q ss_pred HHH-hCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC---------------------------------------
Q 011387 187 LRN-YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--------------------------------------- 226 (487)
Q Consensus 187 l~~-~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--------------------------------------- 226 (487)
... .+.....+++|+|+-.+....++..|+.--|.++.+.
T Consensus 537 ~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPF 616 (1157)
T KOG0386|consen 537 TLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPF 616 (1157)
T ss_pred HhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHH
Confidence 333 3334456788888766555555555544433333110
Q ss_pred ------------------------------------------------------------------CCCCcceEEEEe--
Q 011387 227 ------------------------------------------------------------------FNRPNLFYEVRY-- 238 (487)
Q Consensus 227 ------------------------------------------------------------------~~~~~~~~~v~~-- 238 (487)
.+.|.++..+..
T Consensus 617 lLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~ 696 (1157)
T KOG0386|consen 617 LLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSY 696 (1157)
T ss_pred HHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccc
Confidence 000111100000
Q ss_pred --eCc------hhhHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC
Q 011387 239 --KDL------LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (487)
Q Consensus 239 --~~~------~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (487)
.-. ...++..|..++.+ ..+.+++.||.-..-..-+..+|.-.++....+.|....++|-..++.|..-.
T Consensus 697 ~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pd 776 (1157)
T KOG0386|consen 697 TLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPD 776 (1157)
T ss_pred ccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCC
Confidence 000 00122222222211 24678999999988888899999888899999999999999999999998643
Q ss_pred ---CcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHH
Q 011387 309 ---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (487)
Q Consensus 309 ---~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~ 375 (487)
...|.+|.+.|.|+|+...+.||.||..+++....|+.-||.|-|+.-.+-++....-...-..+++
T Consensus 777 s~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~ 846 (1157)
T KOG0386|consen 777 SPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILA 846 (1157)
T ss_pred CceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHH
Confidence 4578899999999999999999999999999999999999999998887777655443333333433
No 151
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.45 E-value=5.4e-12 Score=134.67 Aligned_cols=306 Identities=16% Similarity=0.135 Sum_probs=194.9
Q ss_pred CCcHHHHHHHHHHH--cC--CCEEEEcCCCchhhHHHH-HhHh---cC--------CCeEEEeCcHHHHHHHHHHHHHHc
Q 011387 38 QFRDKQLDAIQAVL--SG--RDCFCLMPTGGGKSMCYQ-IPAL---AK--------PGIVLVVSPLIALMENQVIGLKEK 101 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l--~~--~dvlv~apTGsGKTl~~~-lp~l---~~--------~~~~lvl~P~~~L~~q~~~~l~~~ 101 (487)
.+|.+|++.++.+. +. =+-+++-..|-|||+-.+ +-+. .+ ....+||||. .|+..|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 57899999887653 32 367899999999998532 1111 11 3348999997 7889999999886
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHH
Q 011387 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (487)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~ 181 (487)
.-....+.......++....... ...++++++.+++-. ... ......+.++|+||-|.+-. .-
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~----~~~~iiVtSYDv~Rn-----D~d-~l~~~~wNYcVLDEGHVikN-------~k 1116 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQY----KNANIIVTSYDVVRN-----DVD-YLIKIDWNYCVLDEGHVIKN-------SK 1116 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhc----cccceEEeeHHHHHH-----HHH-HHHhcccceEEecCcceecc-------hH
Confidence 33322222222333433333322 235676666655532 111 12223588999999998754 22
Q ss_pred HHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEE------ecCCC---------------------------
Q 011387 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL------KSSFN--------------------------- 228 (487)
Q Consensus 182 ~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~------~~~~~--------------------------- 228 (487)
.++.+..+.+..-..+.+|+||-.+...+++..+..--|..+ ...|-
T Consensus 1117 tkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLH 1196 (1549)
T KOG0392|consen 1117 TKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALH 1196 (1549)
T ss_pred HHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHH
Confidence 455555555555567999999876555555443321111100 00000
Q ss_pred --------------------------------------------------------------------------------
Q 011387 229 -------------------------------------------------------------------------------- 228 (487)
Q Consensus 229 -------------------------------------------------------------------------------- 228 (487)
T Consensus 1197 KqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcn 1276 (1549)
T KOG0392|consen 1197 KQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCN 1276 (1549)
T ss_pred HHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcC
Confidence
Q ss_pred CCcceEEEEeeC------------------chhhHHHHHHHHHHhC----------------CCceEEEEecccchHHHH
Q 011387 229 RPNLFYEVRYKD------------------LLDDAYADLCSVLKAN----------------GDTCAIVYCLERTTCDEL 274 (487)
Q Consensus 229 ~~~~~~~v~~~~------------------~~~~~~~~l~~~l~~~----------------~~~~~iIf~~s~~~~~~l 274 (487)
.|-+...-...+ ....|+..|.+++... .+.+++|||+-+...+-+
T Consensus 1277 HpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlV 1356 (1549)
T KOG0392|consen 1277 HPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLV 1356 (1549)
T ss_pred CcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHH
Confidence 000000000000 0002334455555432 245799999999999999
Q ss_pred HHHHHhCC-CceE--EecCCCCHHHHHHHHHHHhcC-CCcEEE-EcCccccccccCCCcEEEEeCCCCCHHHHHHHHhcc
Q 011387 275 SAYLSAGG-ISCA--AYHAGLNDKARSSVLDDWISS-RKQVVV-ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 349 (487)
Q Consensus 275 ~~~L~~~g-~~~~--~~h~~l~~~~R~~~~~~f~~g-~~~vLV-aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRa 349 (487)
.+.|-+.- ..+. .+.|+.++.+|.++.++|.++ .++||+ +|-+.|-|+|+-+.+.||.++-.|++..-+|..-||
T Consensus 1357 ekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRA 1436 (1549)
T KOG0392|consen 1357 EKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1436 (1549)
T ss_pred HHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHH
Confidence 88886643 3333 688999999999999999998 688765 567899999999999999999999999999999999
Q ss_pred CCCCCCceEEEE
Q 011387 350 GRDQLPSKSLLY 361 (487)
Q Consensus 350 gR~g~~g~~i~~ 361 (487)
.|-|++-.+-+|
T Consensus 1437 HRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1437 HRIGQKRVVNVY 1448 (1549)
T ss_pred HhhcCceeeeee
Confidence 999988766554
No 152
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.37 E-value=6.7e-12 Score=107.52 Aligned_cols=135 Identities=30% Similarity=0.360 Sum_probs=86.2
Q ss_pred CCEEEEcCCCchhhHHHHHhHhc-----CCCeEEEeCcHHHHHHHHHHHHHHcC---CceEEecCCCCHHHHHHHHHHHh
Q 011387 54 RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKG---IAGEFLSSTQTMQVKTKIYEDLD 125 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~-----~~~~~lvl~P~~~L~~q~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 125 (487)
+++++.+|||+|||..+...+.. ..++++|++|+..++.|+.+.+.... ................ ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHh
Confidence 46899999999999887765543 35899999999999999999888754 5555555443333222 111
Q ss_pred cCCCcccEEEeCcccccChhhHHHHHh-hhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCC
Q 011387 126 SGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (487)
Q Consensus 126 ~~~~~~~il~~tpe~v~t~~~~~~l~~-~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~ 203 (487)
.....++++|++.+.. .+.. ......++++||||+|.+.... +.... ........+..+++++|||+
T Consensus 77 --~~~~~i~i~t~~~~~~-----~~~~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~--~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 --SGKTDIVVGTPGRLLD-----ELERLKLSLKKLDLLILDEAHRLLNQG--FGLLG--LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred --cCCCCEEEECcHHHHH-----HHHcCCcchhcCCEEEEeCHHHHhhcc--hHHHH--HHHHhhCCccceEEEEeccC
Confidence 1235666666654321 1111 1124468899999999987632 11111 12233445678899999996
No 153
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.37 E-value=5.4e-11 Score=128.00 Aligned_cols=91 Identities=25% Similarity=0.264 Sum_probs=71.1
Q ss_pred EEEEecccchHHHHHHHHHhC----C--CceEEecCCCCHHHHHHHHHHH---h-------------------c----CC
Q 011387 261 AIVYCLERTTCDELSAYLSAG----G--ISCAAYHAGLNDKARSSVLDDW---I-------------------S----SR 308 (487)
Q Consensus 261 ~iIf~~s~~~~~~l~~~L~~~----g--~~~~~~h~~l~~~~R~~~~~~f---~-------------------~----g~ 308 (487)
++|-.++++.+-.+|+.|-.. + +.+..||+...-..|..+++.. . + +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 688888899888888888654 2 3477899999887777666443 1 1 35
Q ss_pred CcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCC
Q 011387 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (487)
Q Consensus 309 ~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 354 (487)
..|+|+|++.+.|+|+ |.+++| .-|.++.+.+|++||+.|.|.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhccccccc
Confidence 6899999999999997 456554 457789999999999999874
No 154
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.33 E-value=1.6e-10 Score=122.14 Aligned_cols=323 Identities=20% Similarity=0.174 Sum_probs=200.0
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC---CCeEEEeCcHHHHHHHHHHHHHH----
Q 011387 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE---- 100 (487)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~q~~~~l~~---- 100 (487)
.+-+++.|. +|+=.+.+-.+.-...-+.-+.||-||||+..+|+... +..+.|+...--|+.--.+++..
T Consensus 71 Ea~~Rvlg~---~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~ 147 (822)
T COG0653 71 EASKRVLGM---RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEF 147 (822)
T ss_pred HHHHHhcCC---ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHH
Confidence 344455564 33334444444445556999999999999999998643 77788888888888865555444
Q ss_pred cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH---HhhhhcCCccEEEEecccccc------
Q 011387 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS------ 171 (487)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l---~~~~~~~~l~~lViDEah~~~------ 171 (487)
+|+.+....+.....++...+. .++.|+|..-+.-.-..+.+ ........+.+.|+||++.++
T Consensus 148 LGlsvG~~~~~m~~~ek~~aY~--------~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARt 219 (822)
T COG0653 148 LGLSVGVILAGMSPEEKRAAYA--------CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEART 219 (822)
T ss_pred cCCceeeccCCCChHHHHHHHh--------cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeecccc
Confidence 6999999888888888877765 67888877655443222222 112223457788888888763
Q ss_pred ----ccCCCC-hHHHHHHHHHHHhCC------------------------------------------------------
Q 011387 172 ----SWGHDF-RPSYRKLSSLRNYLP------------------------------------------------------ 192 (487)
Q Consensus 172 ----~~g~~f-~~~~~~l~~l~~~~~------------------------------------------------------ 192 (487)
.|.... -..|..+..+...+.
T Consensus 220 PLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l 299 (822)
T COG0653 220 PLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHIL 299 (822)
T ss_pred ceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHH
Confidence 221111 122333222221110
Q ss_pred ----------CC------------------------------------------------------cEEEEecCCChHHH
Q 011387 193 ----------DV------------------------------------------------------PILALTATAAPKVQ 208 (487)
Q Consensus 193 ----------~~------------------------------------------------------~~i~lSAT~~~~~~ 208 (487)
+- .+.+||+|+..+.
T Consensus 300 ~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~- 378 (822)
T COG0653 300 FFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEE- 378 (822)
T ss_pred hhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhh-
Confidence 00 0122222222111
Q ss_pred HHHHHHhcCCCCeEEecCCCCCcceEEEEee--CchhhHHHHHHHHHHhC--CCceEEEEecccchHHHHHHHHHhCCCc
Q 011387 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYK--DLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGIS 284 (487)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~g~~ 284 (487)
.++..+-.-.++..+.++|.++...... .....++..+++.++.. .++|+||-+.+.+..|.+.+.|.+.|++
T Consensus 379 ---~EF~~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~ 455 (822)
T COG0653 379 ---EEFDVIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIP 455 (822)
T ss_pred ---hhhhhccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCC
Confidence 1111112223344555666654322211 11246677777666543 7899999999999999999999999998
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCc-----------EEEEeCCCCCHHHHHHHHhccCCCC
Q 011387 285 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR-----------LVCHFNIPKSMEAFYQESGRAGRDQ 353 (487)
Q Consensus 285 ~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~-----------~VI~~~~p~s~~~y~Qr~GRagR~g 353 (487)
-..+.+.-...+-..+.+.-. ..-|-|||+++|+|-|+.--. +||-..--.|-.---|..||+||.|
T Consensus 456 h~VLNAk~h~~EA~Iia~AG~--~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG 533 (822)
T COG0653 456 HNVLNAKNHAREAEIIAQAGQ--PGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG 533 (822)
T ss_pred ceeeccccHHHHHHHHhhcCC--CCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC
Confidence 877777766544433333322 235889999999999976222 3554444445555569999999999
Q ss_pred CCceEEEEEecchH
Q 011387 354 LPSKSLLYYGMDDR 367 (487)
Q Consensus 354 ~~g~~i~~~~~~d~ 367 (487)
-+|.+..|++-+|.
T Consensus 534 DpG~S~F~lSleD~ 547 (822)
T COG0653 534 DPGSSRFYLSLEDD 547 (822)
T ss_pred CcchhhhhhhhHHH
Confidence 99999998886654
No 155
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.24 E-value=3.5e-10 Score=114.96 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=94.7
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC-CcEEEEcCccccccccCCCcEEEEeCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKDVRLVCHFNI 335 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~vLVaT~~~~~GiDip~v~~VI~~~~ 335 (487)
.+.++|+|.+-.+...-+.++|...|+....+.|.....+|..+..+|...+ .-.|.+|.+.|.|||+...+.||.||.
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecC
Confidence 5678999999999999999999999999999999999999999999998755 457889999999999999999999999
Q ss_pred CCCHHHHHHHHhccCCCCCCceEEEE
Q 011387 336 PKSMEAFYQESGRAGRDQLPSKSLLY 361 (487)
Q Consensus 336 p~s~~~y~Qr~GRagR~g~~g~~i~~ 361 (487)
.|++..-.|...||.|-|+...+.+|
T Consensus 1123 DWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1123 DWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred CCCcchhhHHHHHHHhccCccceeee
Confidence 99999999999999999976654443
No 156
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.21 E-value=1.8e-09 Score=114.94 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=102.8
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC--CcEEEEcCccccccccCCCcEEEEeC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFN 334 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~--~~vLVaT~~~~~GiDip~v~~VI~~~ 334 (487)
.+.++|||+.-.+..+-|..+|+-+|+....+.|..+-++|...++.|..+. ...|.+|..-+.|||+-+.+.||.||
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYD 1354 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYD 1354 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEec
Confidence 5678999999999999999999999999999999999999999999998765 45788899999999999999999999
Q ss_pred CCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhc
Q 011387 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (487)
Q Consensus 335 ~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~ 377 (487)
..|++..-.|.--|+.|-|+.-.+.+|--.++...-..|+++.
T Consensus 1355 sDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1355 SDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred CCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhh
Confidence 9999988888888888888777776664444443334555554
No 157
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.17 E-value=3.5e-09 Score=111.55 Aligned_cols=281 Identities=16% Similarity=0.191 Sum_probs=164.8
Q ss_pred EEEEcCCCchhhHHHHHhHh----cCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcc
Q 011387 56 CFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131 (487)
Q Consensus 56 vlv~apTGsGKTl~~~lp~l----~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (487)
.+|.+|.|+|||.+..-+.- ....++++|+-.++|+.+...+++..++............. + .....
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~-------i--~~~~~ 122 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYI-------I--DGRPY 122 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccc-------c--ccccc
Confidence 47899999999977544332 24789999999999999999999887654222111111000 0 00012
Q ss_pred cEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHH-------HHHHHHHHhCCCCcEEEEecCCC
Q 011387 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY-------RKLSSLRNYLPDVPILALTATAA 204 (487)
Q Consensus 132 ~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~-------~~l~~l~~~~~~~~~i~lSAT~~ 204 (487)
+-+.++-+.+ .++. ....++.++|||||+-.+..- -|.+.. ..+..+.+. ...+|++-|++.
T Consensus 123 ~rLivqIdSL------~R~~-~~~l~~yDvVIIDEv~svL~q--L~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~ln 191 (824)
T PF02399_consen 123 DRLIVQIDSL------HRLD-GSLLDRYDVVIIDEVMSVLNQ--LFSPTMRQREEVDNLLKELIRN--AKTVIVMDADLN 191 (824)
T ss_pred CeEEEEehhh------hhcc-cccccccCEEEEehHHHHHHH--HhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCCC
Confidence 3333322211 1111 112345889999999877542 122222 223333333 345799999999
Q ss_pred hHHHHHHHHHhcCCCCeEEecCCCCCcc-----eEEEE-----------e-----------------------eCchhhH
Q 011387 205 PKVQKDVMESLCLQNPLVLKSSFNRPNL-----FYEVR-----------Y-----------------------KDLLDDA 245 (487)
Q Consensus 205 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~-----~~~v~-----------~-----------------------~~~~~~~ 245 (487)
....+.+...-+-.+-.++...+..++. ...-. . .......
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF 271 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTF 271 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhH
Confidence 9887765553322222233222111110 00000 0 0000112
Q ss_pred HHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccC
Q 011387 246 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325 (487)
Q Consensus 246 ~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip 325 (487)
...|..-| ..++++-||+.|...++.+++..+..+..+..++|.-+..+ + +.| ++++|++=|+++.-|+++.
T Consensus 272 ~~~L~~~L--~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~Sf~ 343 (824)
T PF02399_consen 272 FSELLARL--NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGLSFE 343 (824)
T ss_pred HHHHHHHH--hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEeccc
Confidence 22222222 25667889999999999999999998888999988766552 2 334 6789999999999999986
Q ss_pred CCcE--EEEe--CCC--CCHHHHHHHHhccCCCCCCceEEEEEecc
Q 011387 326 DVRL--VCHF--NIP--KSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (487)
Q Consensus 326 ~v~~--VI~~--~~p--~s~~~y~Qr~GRagR~g~~g~~i~~~~~~ 365 (487)
...+ |.-| ... .++.+.+|.+||+ |.=.....+++++..
T Consensus 344 ~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 344 EKHFDSMFAYVKPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDAS 388 (824)
T ss_pred hhhceEEEEEecCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEecc
Confidence 5543 3333 112 4677799999999 443456677777654
No 158
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.13 E-value=4.3e-09 Score=107.33 Aligned_cols=104 Identities=12% Similarity=0.121 Sum_probs=84.2
Q ss_pred CceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc--CCCcE-EEEcCccccccccCCCcEEEEeC
Q 011387 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS--SRKQV-VVATVAFGMGIDRKDVRLVCHFN 334 (487)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~--g~~~v-LVaT~~~~~GiDip~v~~VI~~~ 334 (487)
.++++|...-.+...-+...|++.|.....+||....++|..+++.|.. |..+| |++-.+-|-|+|+-+.+|+|..|
T Consensus 746 keK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvD 825 (901)
T KOG4439|consen 746 KEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVD 825 (901)
T ss_pred cceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEe
Confidence 3444544444444555667777888889999999999999999999974 43454 55667889999999999999999
Q ss_pred CCCCHHHHHHHHhccCCCCCCceEEEE
Q 011387 335 IPKSMEAFYQESGRAGRDQLPSKSLLY 361 (487)
Q Consensus 335 ~p~s~~~y~Qr~GRagR~g~~g~~i~~ 361 (487)
+-|++.-=-|..-|.-|.|++-.++++
T Consensus 826 lHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 826 LHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred cccCHHHHHHHHHHHHHhcccCceEEE
Confidence 999999999999999999988776654
No 159
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.10 E-value=3.8e-09 Score=103.69 Aligned_cols=111 Identities=16% Similarity=0.160 Sum_probs=94.4
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC-C-cEEEEcCccccccccCCCcEEEEeC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-K-QVVVATVAFGMGIDRKDVRLVCHFN 334 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~-~vLVaT~~~~~GiDip~v~~VI~~~ 334 (487)
..-+.|||.+-....+-+.=.|.+.|..++.+-|+|++..|...++.|+++- + -.|++-.+.|-.+|+-..++|+..|
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 4457899999988898898899999999999999999999999999998753 3 3577778889999999999999999
Q ss_pred CCCCHHHHHHHHhccCCCCC--CceEEEEEecchH
Q 011387 335 IPKSMEAFYQESGRAGRDQL--PSKSLLYYGMDDR 367 (487)
Q Consensus 335 ~p~s~~~y~Qr~GRagR~g~--~g~~i~~~~~~d~ 367 (487)
+=|++..=.|.-.|..|-|+ |=.++.|+-....
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 88899999999889988884 5567777665543
No 160
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.09 E-value=1.2e-08 Score=114.59 Aligned_cols=117 Identities=20% Similarity=0.206 Sum_probs=100.3
Q ss_pred HHHHHHHHH-H--hCCCc--eEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC--CCcEEEEcCc
Q 011387 245 AYADLCSVL-K--ANGDT--CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS--RKQVVVATVA 317 (487)
Q Consensus 245 ~~~~l~~~l-~--~~~~~--~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g--~~~vLVaT~~ 317 (487)
+...+.+++ . ...+. +++||.+......-+...|...++....++|+++.+.|...++.|.++ ..-++++|.+
T Consensus 693 k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~ka 772 (866)
T COG0553 693 KLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKA 772 (866)
T ss_pred HHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecc
Confidence 344444555 1 22444 899999999999999999999998899999999999999999999986 4567777889
Q ss_pred cccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEE
Q 011387 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (487)
Q Consensus 318 ~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 361 (487)
.|.|+|+-..++||++|..+++....|...|+.|.|+...+.++
T Consensus 773 gg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 773 GGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred cccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 99999999999999999999999999999999999987766554
No 161
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.98 E-value=1.8e-07 Score=93.87 Aligned_cols=298 Identities=15% Similarity=0.184 Sum_probs=186.3
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCce-EEecCCC------------CH-------HHHHHHHHHHhcCCC--------
Q 011387 78 PGIVLVVSPLIALMENQVIGLKEKGIAG-EFLSSTQ------------TM-------QVKTKIYEDLDSGKP-------- 129 (487)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~~~~~-~~~~~~~------------~~-------~~~~~~~~~~~~~~~-------- 129 (487)
.+++|||+|++..+.+.++.|.++.... ...+-.. .. ..+-..+..+-.|+.
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 6789999999999999999987753221 0000000 00 000001122222221
Q ss_pred -----ccc---EEEeCcccccChhhHHHHHh--------hhhcCCccEEEEeccccccc--cCCCChHHH----------
Q 011387 130 -----SLR---LLYVTPELTATPGFMSKLKK--------IHSRGLLNLVAIDEAHCISS--WGHDFRPSY---------- 181 (487)
Q Consensus 130 -----~~~---il~~tpe~v~t~~~~~~l~~--------~~~~~~l~~lViDEah~~~~--~g~~f~~~~---------- 181 (487)
.++ -.|.+..++++|--+..+.. .-.++.+.++|||.||.+.- |.| ....+
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~H-v~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEH-VLHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHH-HHHHHHHhccCCCCC
Confidence 011 13446668888854443322 22255688999999998853 432 11111
Q ss_pred --HHHHHHHHhCC------CCcEEEEecCCChHHHHHHHHHhc-CCCCeEEec-----------CCCCCcceEEEEeeC-
Q 011387 182 --RKLSSLRNYLP------DVPILALTATAAPKVQKDVMESLC-LQNPLVLKS-----------SFNRPNLFYEVRYKD- 240 (487)
Q Consensus 182 --~~l~~l~~~~~------~~~~i~lSAT~~~~~~~~i~~~l~-~~~~~~~~~-----------~~~~~~~~~~v~~~~- 240 (487)
..+.+++..+- -.|.+++|+..+++....+..... ......+.. ....++++..+....
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 11112222111 258999999999988665554221 111111111 112223333333221
Q ss_pred --chhhHHHH----HHHHHH-hCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 011387 241 --LLDDAYAD----LCSVLK-ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (487)
Q Consensus 241 --~~~~~~~~----l~~~l~-~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLV 313 (487)
..+..++. ++.-+. ....+.+|||++|--+=-++-+.|++.++..+.+|--.+..+-.+.-..|.+|+.+||+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 11223332 333334 44567899999999999999999999999999999999999999999999999999999
Q ss_pred EcCc--cccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCC------CCceEEEEEecchHHHHHHHHHh
Q 011387 314 ATVA--FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ------LPSKSLLYYGMDDRRRMEFILSK 376 (487)
Q Consensus 314 aT~~--~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g------~~g~~i~~~~~~d~~~~~~i~~~ 376 (487)
-|.- +=+-..+.+++.||.|++|..+.-|-..++-.+... ....|.++|+.-|.-.++.|+-.
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt 426 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGT 426 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCH
Confidence 9974 456678899999999999999888877775544433 35789999999999888877643
No 162
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.95 E-value=2.8e-08 Score=104.24 Aligned_cols=113 Identities=15% Similarity=0.143 Sum_probs=95.0
Q ss_pred HHHHHHhC--CCceEEEEecccchHHHHHHHHHh----------------------CCCceEEecCCCCHHHHHHHHHHH
Q 011387 249 LCSVLKAN--GDTCAIVYCLERTTCDELSAYLSA----------------------GGISCAAYHAGLNDKARSSVLDDW 304 (487)
Q Consensus 249 l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~----------------------~g~~~~~~h~~l~~~~R~~~~~~f 304 (487)
|+++|+.. -+.+.|||.+|......+..+|.- .|...+.+.|..+..+|..+.+.|
T Consensus 1131 LleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~F 1210 (1567)
T KOG1015|consen 1131 LLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEF 1210 (1567)
T ss_pred HHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHh
Confidence 44444432 467899999999999988888863 244667889999999999999999
Q ss_pred hcCC----CcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEE
Q 011387 305 ISSR----KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (487)
Q Consensus 305 ~~g~----~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 361 (487)
.+-. .-.||+|.|.+.|||+-..+.||+||..|++.--.|-+=|+-|.|+..-|++|
T Consensus 1211 Ndp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1211 NDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred cCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 8632 24899999999999999999999999999999999999999999987767665
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.94 E-value=1.8e-09 Score=90.70 Aligned_cols=132 Identities=18% Similarity=0.115 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCchhhHHHHH----hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCC
Q 011387 53 GRDCFCLMPTGGGKSMCYQI----PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~l----p~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (487)
|+-.++-+.+|+|||.-.+- -.+.++.++||+.|||.++....+.|+...+. .-........ .+.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~--~~t~~~~~~~---------~g~ 72 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVR--FHTNARMRTH---------FGS 72 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEE--EESTTSS-------------SS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcc--cCceeeeccc---------cCC
Confidence 44567889999999975332 24567999999999999999999999865432 2222221100 111
Q ss_pred CcccEEEeCcccccChhhH-HHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHH
Q 011387 129 PSLRLLYVTPELTATPGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (487)
Q Consensus 129 ~~~~il~~tpe~v~t~~~~-~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (487)
. +..+.+.+.+ ..+.......+++++|+||||....+.--++. .+..+ .......+|++|||++-..
T Consensus 73 --~------~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg---~l~~~-~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 73 --S------IIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARG---YLREL-AESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp --S------SEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHH---HHHHH-HHTTS-EEEEEESS-TT--
T ss_pred --C------cccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhhe---eHHHh-hhccCeeEEEEeCCCCCCC
Confidence 1 1133344332 33445555677999999999986432211111 11111 2234568999999997653
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.92 E-value=5.7e-09 Score=101.92 Aligned_cols=159 Identities=18% Similarity=0.097 Sum_probs=91.9
Q ss_pred HHHHHHHHHH-------------cCCCEEEEcCCCchhhHHHHHhHh---cC-----CCeEEEeCcHHHHHHHHHHHHHH
Q 011387 42 KQLDAIQAVL-------------SGRDCFCLMPTGGGKSMCYQIPAL---AK-----PGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 42 ~Q~~~i~~~l-------------~~~dvlv~apTGsGKTl~~~lp~l---~~-----~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
+|.+++..++ ..+.+++...+|+|||+..+..+. .. ...+|||+|. ++..+|..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 5777776653 225677788999999987654432 11 1259999999 888999999998
Q ss_pred cC----CceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCccccc---ChhhHHHHHhhhhcCCccEEEEecccccccc
Q 011387 101 KG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA---TPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (487)
Q Consensus 101 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~---t~~~~~~l~~~~~~~~l~~lViDEah~~~~~ 173 (487)
.. .......+.. .............+++++|.+.+. .+.....+. ...++++|+||+|.+.+.
T Consensus 80 ~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~----~~~~~~vIvDEaH~~k~~ 149 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDS------ERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLK----QIKWDRVIVDEAHRLKNK 149 (299)
T ss_dssp HSGT-TS-EEEESSSC------HHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHH----TSEEEEEEETTGGGGTTT
T ss_pred cccccccccccccccc------ccccccccccccceeeeccccccccccccccccccc----cccceeEEEecccccccc
Confidence 64 3334443333 111112223345677777777665 111122222 234899999999999654
Q ss_pred CCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCC
Q 011387 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 218 (487)
Q Consensus 174 g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~ 218 (487)
+ .........+.....+++||||..+...++...+.+-
T Consensus 150 ~-------s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L 187 (299)
T PF00176_consen 150 D-------SKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFL 187 (299)
T ss_dssp T-------SHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHH
T ss_pred c-------ccccccccccccceEEeeccccccccccccccchhee
Confidence 4 2223333335567789999999887777776665543
No 165
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.86 E-value=3.9e-07 Score=101.47 Aligned_cols=282 Identities=18% Similarity=0.176 Sum_probs=151.0
Q ss_pred CCEEEEcCCCchhhHHHHHh-----HhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCC
Q 011387 54 RDCFCLMPTGGGKSMCYQIP-----ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp-----~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (487)
+..+|+=-||||||+.-... -+...+.+++|+-++.|-.|..+.+.+++..........+..+ ....+..+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~---Lk~~l~~~- 349 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSE---LKELLEDG- 349 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHH---HHHHHhcC-
Confidence 45788889999999864322 2345789999999999999999999997544333222222222 23333333
Q ss_pred CcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHH
Q 011387 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (487)
Q Consensus 129 ~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~ 208 (487)
.-.++++|-..+.....-. ......+.=-++|+||||+ ++.| ..-..+...+++...++||+||....-
T Consensus 350 -~~~ii~TTIQKf~~~~~~~--~~~~~~~~~ivvI~DEaHR-SQ~G-------~~~~~~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 350 -KGKIIVTTIQKFNKAVKED--ELELLKRKNVVVIIDEAHR-SQYG-------ELAKLLKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred -CCcEEEEEecccchhhhcc--cccccCCCcEEEEEechhh-cccc-------HHHHHHHHHhccceEEEeeCCcccccc
Confidence 2456666655443211000 0001111223589999997 4555 233445778888999999999864432
Q ss_pred HHHHHHhcCCCCe--EEecCCCCC---cceEEEE-eeCchh---------------------------------------
Q 011387 209 KDVMESLCLQNPL--VLKSSFNRP---NLFYEVR-YKDLLD--------------------------------------- 243 (487)
Q Consensus 209 ~~i~~~l~~~~~~--~~~~~~~~~---~~~~~v~-~~~~~~--------------------------------------- 243 (487)
..-....+...-. .+..+...- .+.|... ..+...
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 2200111111000 010000000 1122111 000000
Q ss_pred ----hHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhCCC---------c--------------eEEecCCCCH
Q 011387 244 ----DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI---------S--------------CAAYHAGLND 294 (487)
Q Consensus 244 ----~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~---------~--------------~~~~h~~l~~ 294 (487)
.....+.+..+. ..+.++++.+.+++.+..+++....... . ....|....
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~- 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKLK- 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHHH-
Confidence 001112222222 2456788888888855555544332110 0 000122221
Q ss_pred HHHHHHHHHH--hcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCC
Q 011387 295 KARSSVLDDW--ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (487)
Q Consensus 295 ~~R~~~~~~f--~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~ 352 (487)
..+......| .+...++||.++++-.|.|.|.+..+ -.|-|----..+|.+-|+.|.
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceE-EeccccccchHHHHHHHhccC
Confidence 2223333443 35679999999999999999966655 466676667789999999993
No 166
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.76 E-value=5.8e-08 Score=91.67 Aligned_cols=133 Identities=21% Similarity=0.234 Sum_probs=93.9
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 011387 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (487)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~---- 100 (487)
.+..+.+|+ .|++.|..++-.+..|+ ++.+.||-|||++..+|+.. .+..+-|++....|+..-.+.+..
T Consensus 68 ea~~r~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 68 EAARRTLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp HHHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 444556676 48899999988887777 99999999999999888764 477899999999999987777655
Q ss_pred cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh---hhhcCCccEEEEecccccc
Q 011387 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCIS 171 (487)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~---~~~~~~l~~lViDEah~~~ 171 (487)
+|+.+...........+...+. .+|+|+|..-+.-.-..+.+.. ......+.++||||+|.++
T Consensus 145 LGlsv~~~~~~~~~~~r~~~Y~--------~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREAYA--------ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp TT--EEEEETTTEHHHHHHHHH--------SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhhccccCccccCHHHHHHHHh--------CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 7999999988888777666655 6799998775543222222211 1114568999999999874
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.49 E-value=9.7e-07 Score=85.47 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=57.0
Q ss_pred cCCCCCcHHHHHHH----HHHHcCCCEEEEcCCCchhhHHHHHhHhc----CCC-----eEEEeCcHHHHHHHHHHHHHH
Q 011387 34 FGHAQFRDKQLDAI----QAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 34 fg~~~~~~~Q~~~i----~~~l~~~dvlv~apTGsGKTl~~~lp~l~----~~~-----~~lvl~P~~~L~~q~~~~l~~ 100 (487)
|.|. +||.|.+.+ ..+.+|+++++.||||+|||+++++|++. .+. +++|.++|.++..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 6776 699999955 44557889999999999999999999873 233 799999999999998888887
Q ss_pred cCC
Q 011387 101 KGI 103 (487)
Q Consensus 101 ~~~ 103 (487)
...
T Consensus 84 ~~~ 86 (289)
T smart00489 84 LMQ 86 (289)
T ss_pred ccc
Confidence 643
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.49 E-value=9.7e-07 Score=85.47 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=57.0
Q ss_pred cCCCCCcHHHHHHH----HHHHcCCCEEEEcCCCchhhHHHHHhHhc----CCC-----eEEEeCcHHHHHHHHHHHHHH
Q 011387 34 FGHAQFRDKQLDAI----QAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 34 fg~~~~~~~Q~~~i----~~~l~~~dvlv~apTGsGKTl~~~lp~l~----~~~-----~~lvl~P~~~L~~q~~~~l~~ 100 (487)
|.|. +||.|.+.+ ..+.+|+++++.||||+|||+++++|++. .+. +++|.++|.++..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 6776 699999955 44557889999999999999999999873 233 799999999999998888887
Q ss_pred cCC
Q 011387 101 KGI 103 (487)
Q Consensus 101 ~~~ 103 (487)
...
T Consensus 84 ~~~ 86 (289)
T smart00488 84 LMQ 86 (289)
T ss_pred ccc
Confidence 643
No 169
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.45 E-value=1.8e-08 Score=107.20 Aligned_cols=222 Identities=17% Similarity=0.175 Sum_probs=122.9
Q ss_pred CCcHHHHHHHHHHH-cCCCEEEEcCCCchhhHHHHHhHhcC-----CCeEEEeCcHHHHHHHHHHHHHHc----CCceEE
Q 011387 38 QFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEK----GIAGEF 107 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l-~~~dvlv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~~L~~q~~~~l~~~----~~~~~~ 107 (487)
.+.|.|...+..+. ...++++.+|||+|||++|.+..... +.++++++|..+|+..-++.+... |++...
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 45567777665443 34678999999999999998776543 678999999999999877777653 666666
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEecccccccc-CCCChHHHHHHHH
Q 011387 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW-GHDFRPSYRKLSS 186 (487)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~-g~~f~~~~~~l~~ 186 (487)
+.+....+... . ...+++++||+...--. ..+....-...++++|+||.|++.+. |.-+ .+..
T Consensus 1007 ~tgd~~pd~~~-----v----~~~~~~ittpek~dgi~--Rsw~~r~~v~~v~~iv~de~hllg~~rgPVl-----e~iv 1070 (1230)
T KOG0952|consen 1007 LTGDVTPDVKA-----V----READIVITTPEKWDGIS--RSWQTRKYVQSVSLIVLDEIHLLGEDRGPVL-----EVIV 1070 (1230)
T ss_pred ccCccCCChhh-----e----ecCceEEcccccccCcc--ccccchhhhccccceeecccccccCCCcceE-----EEEe
Confidence 66665544211 1 12567777777553211 11222222345888999999998763 3211 1111
Q ss_pred HHHhC------CCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcc-eEEEEeeC------chhhHHHHHHHHH
Q 011387 187 LRNYL------PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL-FYEVRYKD------LLDDAYADLCSVL 253 (487)
Q Consensus 187 l~~~~------~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~v~~~~------~~~~~~~~l~~~l 253 (487)
.+..+ +.++.+.+|--+. ...++.++++..+..-+.+ +.+|+- ...+.-.+ ....+.+.-...+
T Consensus 1071 sr~n~~s~~t~~~vr~~glsta~~--na~dla~wl~~~~~~nf~~-svrpvp~~~~i~gfp~~~~cprm~smnkpa~qai 1147 (1230)
T KOG0952|consen 1071 SRMNYISSQTEEPVRYLGLSTALA--NANDLADWLNIKDMYNFRP-SVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAI 1147 (1230)
T ss_pred eccccCccccCcchhhhhHhhhhh--ccHHHHHHhCCCCcCCCCc-ccccCCceEeecCCCchhcchhhhhcccHHHHHH
Confidence 11111 1233444432222 2257788887765421111 122211 11111000 0011222333444
Q ss_pred HhC-CCceEEEEecccchHHHHHHHH
Q 011387 254 KAN-GDTCAIVYCLERTTCDELSAYL 278 (487)
Q Consensus 254 ~~~-~~~~~iIf~~s~~~~~~l~~~L 278 (487)
+.+ +..++|||+.++.....-+..|
T Consensus 1148 k~~sp~~p~lifv~srrqtrlta~~l 1173 (1230)
T KOG0952|consen 1148 KTHSPIKPVLIFVSSRRQTRLTALDL 1173 (1230)
T ss_pred hcCCCCCceEEEeecccccccchHhH
Confidence 544 6789999999987765444433
No 170
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.40 E-value=1e-06 Score=92.60 Aligned_cols=296 Identities=18% Similarity=0.133 Sum_probs=170.1
Q ss_pred HHHHHHHHcCCCEEEEcCCCchhhHHH---HHhHhcCC-----CeEEEeCcHHHHHHHHHHHHHH-cCCceEEecCCCCH
Q 011387 44 LDAIQAVLSGRDCFCLMPTGGGKSMCY---QIPALAKP-----GIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTM 114 (487)
Q Consensus 44 ~~~i~~~l~~~dvlv~apTGsGKTl~~---~lp~l~~~-----~~~lvl~P~~~L~~q~~~~l~~-~~~~~~~~~~~~~~ 114 (487)
.++++++.++.-+++.+.||.|||.-+ +|-++..+ ..+.+--|++..+....+++.. .+...... ...
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~t---vgy 460 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGET---CGY 460 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccc---ccc
Confidence 345566667777889999999999654 34444332 2355666777665555555432 11110000 000
Q ss_pred HHHHHHHHHHhcCCCcccEEEeCcc-----cccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHH
Q 011387 115 QVKTKIYEDLDSGKPSLRLLYVTPE-----LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (487)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~il~~tpe-----~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~ 189 (487)
. .+..-++|. +.+|.+-+...... .+..+..+++||.|...-.+. |- ...+..++.
T Consensus 461 ~---------------vRf~Sa~prpyg~i~fctvgvllr~~e~-glrg~sh~i~deiherdv~~d-fl--l~~lr~m~~ 521 (1282)
T KOG0921|consen 461 N---------------VRFDSATPRPYGSIMFCTVGVLLRMMEN-GLRGISHVIIDEIHERDVDTD-FV--LIVLREMIS 521 (1282)
T ss_pred c---------------ccccccccccccceeeeccchhhhhhhh-cccccccccchhhhhhccchH-HH--HHHHHhhhc
Confidence 0 111111111 34454433333222 234578899999998643332 21 234555667
Q ss_pred hCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEE---------------------ecCCCCCcceEEE--------E---
Q 011387 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVL---------------------KSSFNRPNLFYEV--------R--- 237 (487)
Q Consensus 190 ~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~---------------------~~~~~~~~~~~~v--------~--- 237 (487)
.++...++++|||.+.+....++... ....+. .....+. ..+.. .
T Consensus 522 ty~dl~v~lmsatIdTd~f~~~f~~~--p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~-k~k~~~~~~~~~~ddK~ 598 (1282)
T KOG0921|consen 522 TYRDLRVVLMSATIDTDLFTNFFSSI--PDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQK-KRKKDDDEEDEEVDDKG 598 (1282)
T ss_pred cchhhhhhhhhcccchhhhhhhhccc--cceeeccccccHHHHHHHHhhhhhhccCCCcCcc-chhhcccccCchhhhcc
Confidence 77788888999987655332221110 000000 0000000 00000 0
Q ss_pred -----------------------eeCchhhHHHHHHHHHHhC-CCceEEEEecccchHHHHHHHHHhC-------CCceE
Q 011387 238 -----------------------YKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAG-------GISCA 286 (487)
Q Consensus 238 -----------------------~~~~~~~~~~~l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~-------g~~~~ 286 (487)
.++..-...+.+...++.. -.+.++||.+--...-.|..+|... .....
T Consensus 599 ~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~il 678 (1282)
T KOG0921|consen 599 RNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEIL 678 (1282)
T ss_pred cccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccc
Confidence 0000001112222222222 3456888888887777777777653 34678
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCC------------------CHHHHHHHHhc
Q 011387 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------------SMEAFYQESGR 348 (487)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~------------------s~~~y~Qr~GR 348 (487)
..|+.+...+..++.+....|..++|++|..+...|-+.++.+||..+..+ |..+..||.||
T Consensus 679 p~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr 758 (1282)
T KOG0921|consen 679 PLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGR 758 (1282)
T ss_pred cchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhccc
Confidence 899999888888888888889999999999999999999988888655432 67778999999
Q ss_pred cCCCCCCceEEEEEecc
Q 011387 349 AGRDQLPSKSLLYYGMD 365 (487)
Q Consensus 349 agR~g~~g~~i~~~~~~ 365 (487)
+||. ++|.|..+++..
T Consensus 759 ~grv-R~G~~f~lcs~a 774 (1282)
T KOG0921|consen 759 AGRV-RPGFCFHLCSRA 774 (1282)
T ss_pred Ccee-cccccccccHHH
Confidence 9997 688888877643
No 171
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.39 E-value=2.4e-05 Score=85.16 Aligned_cols=81 Identities=16% Similarity=0.070 Sum_probs=50.5
Q ss_pred ccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChH----
Q 011387 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK---- 206 (487)
Q Consensus 131 ~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~---- 206 (487)
-.+++.||.++.. +.+....+...+..+||||||++.+.. .. ...+..+++.-+..-+.+|||.|...
T Consensus 8 ggi~~~T~rIl~~----DlL~~ri~~~~itgiiv~~Ahr~~~~~---~e-aFI~rlyr~~n~~gfIkafSdsP~~~~~g~ 79 (814)
T TIGR00596 8 GGIFSITSRILVV----DLLTGIIPPELITGILVLRADRIIESS---QE-AFILRLYRQKNKTGFIKAFSDNPEAFTMGF 79 (814)
T ss_pred CCEEEEechhhHh----HHhcCCCCHHHccEEEEeecccccccc---cH-HHHHHHHHHhCCCcceEEecCCCcccccch
Confidence 3466667666543 233456667779999999999996521 11 12333444544455588999998763
Q ss_pred -HHHHHHHHhcCCC
Q 011387 207 -VQKDVMESLCLQN 219 (487)
Q Consensus 207 -~~~~i~~~l~~~~ 219 (487)
-...+++.|++..
T Consensus 80 ~~l~~vmk~L~i~~ 93 (814)
T TIGR00596 80 SPLETKMRNLFLRH 93 (814)
T ss_pred HHHHHHHHHhCcCe
Confidence 3566666666653
No 172
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.31 E-value=1.9e-06 Score=76.44 Aligned_cols=112 Identities=16% Similarity=0.223 Sum_probs=75.0
Q ss_pred HHHHHhCCCceEEEEecccchHHHHHHHHHhCCC--ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC--ccccccccC
Q 011387 250 CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRK 325 (487)
Q Consensus 250 ~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~--~~~~GiDip 325 (487)
.++++..+ +.++||++|.+..+.+.+.++..+. ....+.. +..++..+++.|.+++..||+++. .+++|||+|
T Consensus 2 ~~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 2 LELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HHHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred hHHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 34444444 6799999999999999999987542 1123332 355678899999999999999999 999999999
Q ss_pred C--CcEEEEeCCCC----CH--------------------------HHHHHHHhccCCCCCCceEEEEEec
Q 011387 326 D--VRLVCHFNIPK----SM--------------------------EAFYQESGRAGRDQLPSKSLLYYGM 364 (487)
Q Consensus 326 ~--v~~VI~~~~p~----s~--------------------------~~y~Qr~GRagR~g~~g~~i~~~~~ 364 (487)
+ ++.||..++|- ++ ....|.+||+-|....--++++++.
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 6 78899999883 11 1225889999998654444444443
No 173
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=2.2e-05 Score=78.46 Aligned_cols=118 Identities=18% Similarity=0.186 Sum_probs=93.9
Q ss_pred CceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc--cccccccCCCcEEEEeCC
Q 011387 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA--FGMGIDRKDVRLVCHFNI 335 (487)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~--~~~GiDip~v~~VI~~~~ 335 (487)
..-+|||.++.-+--++..++++.++.-..+|.-.+...-.+.-+.|..|...||+-|.- +-+--++.+|+-||.|.+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqp 631 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQP 631 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecC
Confidence 345799999999999999999998887777776666666667778899999999999975 567789999999999999
Q ss_pred CCCHHHH---HHHHhccCCCC----CCceEEEEEecchHHHHHHHHH
Q 011387 336 PKSMEAF---YQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFILS 375 (487)
Q Consensus 336 p~s~~~y---~Qr~GRagR~g----~~g~~i~~~~~~d~~~~~~i~~ 375 (487)
|..+.-| +.+.+|+.-.| ....|.++|+.-|.-.+..+.-
T Consensus 632 P~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 632 PNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred CCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 9987665 55666654333 3457889999999888777654
No 174
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.12 E-value=2.7e-05 Score=85.04 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=41.9
Q ss_pred CCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCC
Q 011387 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (487)
Q Consensus 308 ~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~ 352 (487)
.++.|++-+++.+|.|-|++-.+.-+.-..|...-.|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 678999999999999999999999999888999999999999983
No 175
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.90 E-value=8.8e-05 Score=70.55 Aligned_cols=163 Identities=17% Similarity=0.120 Sum_probs=95.9
Q ss_pred CCcHHHHHHHHHHHc----------CCCEEEEcCCCchhhHHHH---HhHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCC
Q 011387 38 QFRDKQLDAIQAVLS----------GRDCFCLMPTGGGKSMCYQ---IPALAK-PGIVLVVSPLIALMENQVIGLKEKGI 103 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~----------~~dvlv~apTGsGKTl~~~---lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~~~ 103 (487)
.+...|.+++-...+ +.-+++--.||.||--... +-...+ ..+.|+++....|..|-.+.|+..|.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 578889998755431 2345555599999985322 222233 45699999999999999999998776
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccCh--------hhHHHHHhhhhcCCccEEEEeccccccccCC
Q 011387 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP--------GFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (487)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~--------~~~~~l~~~~~~~~l~~lViDEah~~~~~g~ 175 (487)
....+......... ........++++|...+.+. .++..+.+-.....=.+||+||||.......
T Consensus 117 ~~i~v~~l~~~~~~-------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 117 DNIPVHPLNKFKYG-------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CcccceechhhccC-------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 54433322221100 00111234566665543322 2333332222122234899999999865321
Q ss_pred C---ChHHHHHHHHHHHhCCCCcEEEEecCCChHH
Q 011387 176 D---FRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (487)
Q Consensus 176 ~---f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (487)
. -...-.....+.+.+|+.+++.+|||...+.
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep 224 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLPNARVVYASATGASEP 224 (303)
T ss_pred cCccccHHHHHHHHHHHhCCCCcEEEecccccCCC
Confidence 0 1112234556788899999999999976553
No 176
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.73 E-value=9e-05 Score=67.59 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=40.4
Q ss_pred CCcHHHHHHHHHHHcCC-C-EEEEcCCCchhhHHHHH--hHh-cCCCeEEEeCcHHHHHHHHHH
Q 011387 38 QFRDKQLDAIQAVLSGR-D-CFCLMPTGGGKSMCYQI--PAL-AKPGIVLVVSPLIALMENQVI 96 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~-d-vlv~apTGsGKTl~~~l--p~l-~~~~~~lvl~P~~~L~~q~~~ 96 (487)
+|++.|++++..++.+. . +++.+|.|+|||.+... .++ ..+..+++++||...+....+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~ 64 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELRE 64 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHH
Confidence 47889999999997554 3 56779999999965321 122 247889999999888776433
No 177
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.64 E-value=0.00011 Score=68.67 Aligned_cols=63 Identities=33% Similarity=0.432 Sum_probs=48.9
Q ss_pred CCcHHHHHHHHHHHcCCC-EEEEcCCCchhhH--HHHHhHh---------cCCCeEEEeCcHHHHHHHHHHHHHH
Q 011387 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSM--CYQIPAL---------AKPGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~d-vlv~apTGsGKTl--~~~lp~l---------~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
++++.|.+|+..++.... .+|.||+|+|||. +.++..+ ..+.++++++|+.+-+.+.++.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999988 8999999999994 3333333 4488999999999999999988877
No 178
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.63 E-value=0.00024 Score=72.67 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=51.8
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEcCCCchhhHHHH---HhHhcCCCeEEEeCcHHHHHHHHHHHHH
Q 011387 37 AQFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLK 99 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~~d-vlv~apTGsGKTl~~~---lp~l~~~~~~lvl~P~~~L~~q~~~~l~ 99 (487)
+.+.+-|++|+......++ .++.+|+|+|||.... .-++.++.+++|..|+..-+...++++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 4688899999999998865 4789999999996543 2345668999999999999999888754
No 179
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.62 E-value=7.4e-05 Score=67.90 Aligned_cols=54 Identities=20% Similarity=0.237 Sum_probs=36.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC-----CCeEEEeCcHHHH
Q 011387 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIAL 90 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~~L 90 (487)
...+..|..+++++++.+-+++.+|.|+|||+.++..++.. -.+++++-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 45678999999999988888999999999999877665532 3467888787754
No 180
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.56 E-value=0.0022 Score=68.17 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=55.0
Q ss_pred CCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCC--CCCce-----------EEEEEecchHHHHHHH
Q 011387 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD--QLPSK-----------SLLYYGMDDRRRMEFI 373 (487)
Q Consensus 307 g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~--g~~g~-----------~i~~~~~~d~~~~~~i 373 (487)
...+.|.+-.++-+|.|=|+|=.++-.....|..+=.|++||+-|- ++.|. -.++++.++...+..+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 5688999999999999999999999999999999999999999993 22332 2234555666666666
Q ss_pred HHhc
Q 011387 374 LSKN 377 (487)
Q Consensus 374 ~~~~ 377 (487)
.++.
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 5543
No 181
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.55 E-value=0.0027 Score=66.57 Aligned_cols=109 Identities=16% Similarity=0.101 Sum_probs=89.7
Q ss_pred CceEEEEecccchHHHHHHHHHhCCC------------------ceEEecCCCCHHHHHHHHHHHhcCC---CcEEEEcC
Q 011387 258 DTCAIVYCLERTTCDELSAYLSAGGI------------------SCAAYHAGLNDKARSSVLDDWISSR---KQVVVATV 316 (487)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~g~------------------~~~~~h~~l~~~~R~~~~~~f~~g~---~~vLVaT~ 316 (487)
+.++|||..+......+.+.|.+..+ ...-+.|..+..+|++.+++|.+.. .-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 46789999998888888888876422 2234677788999999999998632 46899999
Q ss_pred ccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecch
Q 011387 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (487)
Q Consensus 317 ~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d 366 (487)
+...|||+-...-+|.++..++...-.|.+-|+-|.|+..-|++|---.|
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 99999998888888999999999999999999999999888888754443
No 182
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.48 E-value=0.0012 Score=56.69 Aligned_cols=93 Identities=22% Similarity=0.310 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCCC------ceEEecCCCCHHHHHHHHHHHhcCC-CcEEEEcCccccccccCC--CcEEEEeCCCC----
Q 011387 271 CDELSAYLSAGGI------SCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKD--VRLVCHFNIPK---- 337 (487)
Q Consensus 271 ~~~l~~~L~~~g~------~~~~~h~~l~~~~R~~~~~~f~~g~-~~vLVaT~~~~~GiDip~--v~~VI~~~~p~---- 337 (487)
.+.+++.+...+. .-..+.-+.+..+...+++.|.+.. ..||++|..+++|||+|+ ++.||..++|.
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 3455555555443 2234444555556788999998654 379999988999999997 57899888873
Q ss_pred C---------------------------HHHHHHHHhccCCCCCCceEEEEEe
Q 011387 338 S---------------------------MEAFYQESGRAGRDQLPSKSLLYYG 363 (487)
Q Consensus 338 s---------------------------~~~y~Qr~GRagR~g~~g~~i~~~~ 363 (487)
+ .....|.+||+-|....--++++++
T Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 84 SPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred CHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 0 1223688899988765433444443
No 183
>PF13245 AAA_19: Part of AAA domain
Probab=97.48 E-value=0.00029 Score=53.38 Aligned_cols=53 Identities=30% Similarity=0.356 Sum_probs=36.4
Q ss_pred HHHHHHcCCCE-EEEcCCCchhhHHHH--Hh-HhcC----CCeEEEeCcHHHHHHHHHHHH
Q 011387 46 AIQAVLSGRDC-FCLMPTGGGKSMCYQ--IP-ALAK----PGIVLVVSPLIALMENQVIGL 98 (487)
Q Consensus 46 ~i~~~l~~~dv-lv~apTGsGKTl~~~--lp-~l~~----~~~~lvl~P~~~L~~q~~~~l 98 (487)
++...+.+.++ +|.+|+|+|||.... +. .+.. +..++|++|++..+.+..+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 44433344454 559999999994432 11 1212 678999999999999888777
No 184
>PRK10536 hypothetical protein; Provisional
Probab=97.47 E-value=0.0013 Score=61.64 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=40.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHh----cCC-CeEEEeCcHHHH
Q 011387 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKP-GIVLVVSPLIAL 90 (487)
Q Consensus 35 g~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l----~~~-~~~lvl~P~~~L 90 (487)
++...+..|...+.++.++.-+++.+|+|+|||+.....++ ... .++++.-|..+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA 116 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc
Confidence 55566779999999998888888999999999987654333 222 345555576544
No 185
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.37 E-value=0.0013 Score=56.38 Aligned_cols=93 Identities=24% Similarity=0.341 Sum_probs=60.0
Q ss_pred HHHHHHHHHhCCC---ceEEecCCCCHHHHHHHHHHHhcCCC---cEEEEcCc--cccccccCC--CcEEEEeCCCC---
Q 011387 271 CDELSAYLSAGGI---SCAAYHAGLNDKARSSVLDDWISSRK---QVVVATVA--FGMGIDRKD--VRLVCHFNIPK--- 337 (487)
Q Consensus 271 ~~~l~~~L~~~g~---~~~~~h~~l~~~~R~~~~~~f~~g~~---~vLVaT~~--~~~GiDip~--v~~VI~~~~p~--- 337 (487)
.+.+++.+++.+. ....+.-+....+..++++.|.+..- .||+++.. +++|||+|+ ++.||..++|-
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 4556666665443 12233333333344678888886443 69999887 999999997 68899999873
Q ss_pred -C---------------------------HHHHHHHHhccCCCCCCceEEEEEe
Q 011387 338 -S---------------------------MEAFYQESGRAGRDQLPSKSLLYYG 363 (487)
Q Consensus 338 -s---------------------------~~~y~Qr~GRagR~g~~g~~i~~~~ 363 (487)
+ .....|.+||+-|....--++++++
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 1223688899999865444455544
No 186
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.37 E-value=0.0013 Score=70.72 Aligned_cols=127 Identities=24% Similarity=0.205 Sum_probs=85.0
Q ss_pred CCcHHHHHHHHHHHcCCC-EEEEcCCCchhhHH--HHHhHhc-CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCC
Q 011387 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMC--YQIPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT 113 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~d-vlv~apTGsGKTl~--~~lp~l~-~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~ 113 (487)
.++.-|++|+..++..+| .++.+-+|+|||.. .++-+|. .+++++..+-|.+-+....-.|+..++...-+.+...
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~k 748 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEK 748 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCccc
Confidence 578889999999888776 57889999999954 3444443 4888999999999999999999998888665555443
Q ss_pred HHHHHHH-----------HHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccc
Q 011387 114 MQVKTKI-----------YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (487)
Q Consensus 114 ~~~~~~~-----------~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~ 172 (487)
.....+- +.++...-.+..++.+|---+..|- ...+.+++.|||||-.++.
T Consensus 749 ih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl--------f~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 749 IHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL--------FVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred cchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh--------hhccccCEEEEcccccccc
Confidence 3222111 1122222223445544444333332 2345599999999998865
No 187
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.37 E-value=0.0016 Score=71.15 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=47.4
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHH--HHhHhcC-C--CeEEEeCcHHHHHHH
Q 011387 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK-P--GIVLVVSPLIALMEN 93 (487)
Q Consensus 29 ~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~--~lp~l~~-~--~~~lvl~P~~~L~~q 93 (487)
.+...+++ .+++.|++++..+..++-+++.++.|+|||.+. ++-++.. + ..+++++||-.-+..
T Consensus 315 ~~~~~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 315 EVEKKLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKR 383 (720)
T ss_pred HHHHhcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHH
Confidence 33444564 599999999999998888999999999999753 2333333 3 567888999776653
No 188
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.37 E-value=0.00065 Score=68.01 Aligned_cols=45 Identities=18% Similarity=0.044 Sum_probs=34.1
Q ss_pred EEEEcCCCchhhHHHHHh--Hh---cCCCeEEEeCcHHHHHHHHHHHHHH
Q 011387 56 CFCLMPTGGGKSMCYQIP--AL---AKPGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 56 vlv~apTGsGKTl~~~lp--~l---~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
++|.+..|||||++.+-- .+ ..+..++++++..+|.....+.+..
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 678999999999876522 22 3478899999999998876666654
No 189
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.19 E-value=0.0033 Score=67.03 Aligned_cols=76 Identities=21% Similarity=0.113 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCC-CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHH--HHhHhcC-----CCeEEEeCcHHHHHHHHH
Q 011387 24 EALVKLLRWHFGHA-QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK-----PGIVLVVSPLIALMENQV 95 (487)
Q Consensus 24 ~~~~~~l~~~fg~~-~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~--~lp~l~~-----~~~~lvl~P~~~L~~q~~ 95 (487)
..+...|.+.|+.. ...++|+.|+...+.++-+++.+++|+|||.+. ++..+.. ...+.+.+||-.-+....
T Consensus 137 ~~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~ 216 (615)
T PRK10875 137 ALLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLT 216 (615)
T ss_pred HHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHH
Confidence 45666777777654 235899999999999989999999999999653 2333321 246888899988877766
Q ss_pred HHHH
Q 011387 96 IGLK 99 (487)
Q Consensus 96 ~~l~ 99 (487)
+.+.
T Consensus 217 e~~~ 220 (615)
T PRK10875 217 ESLG 220 (615)
T ss_pred HHHH
Confidence 6554
No 190
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.19 E-value=0.0079 Score=55.35 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=59.8
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHc---CCCEEEEcCCCchhhHHHHHhHhc----CC-CeEEEeCc
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS---GRDCFCLMPTGGGKSMCYQIPALA----KP-GIVLVVSP 86 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~---~~dvlv~apTGsGKTl~~~lp~l~----~~-~~~lvl~P 86 (487)
..|.+..-++.++-.+.. ++ -+|+.|.++...+.+ |++.+..+-+|.|||.+ ++|++. .+ ..+.+++|
T Consensus 3 ~~w~p~~~P~wLl~E~e~--~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~LvrviVp 78 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES--NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSRLVRVIVP 78 (229)
T ss_pred CCCCchhChHHHHHHHHc--Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCcEEEEEcC
Confidence 456666677777766653 44 599999999999885 57899999999999987 455442 33 45666666
Q ss_pred HHHHHHHHHHHHHH
Q 011387 87 LIALMENQVIGLKE 100 (487)
Q Consensus 87 ~~~L~~q~~~~l~~ 100 (487)
. +|..|..+.|++
T Consensus 79 k-~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 79 K-ALLEQMRQMLRS 91 (229)
T ss_pred H-HHHHHHHHHHHH
Confidence 4 788888888776
No 191
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.12 E-value=0.001 Score=68.63 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=66.4
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhH----hcCCCeEEEeCcHHHHHHHHHHHHHHcCCc
Q 011387 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (487)
Q Consensus 29 ~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~----l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~ 104 (487)
.+. .+|+.++..-|..|+.+++...=.++.+|+|+|||.+..--. -...+.+||++|..--+.|.++.+.+.|++
T Consensus 402 ~~s-~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLK 480 (935)
T KOG1802|consen 402 RFS-VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLK 480 (935)
T ss_pred hhc-CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCce
Confidence 444 368899999999999999999999999999999997543211 125889999999999999999999998887
Q ss_pred eEEecC
Q 011387 105 GEFLSS 110 (487)
Q Consensus 105 ~~~~~~ 110 (487)
+.-+.+
T Consensus 481 VvRl~a 486 (935)
T KOG1802|consen 481 VVRLCA 486 (935)
T ss_pred Eeeeeh
Confidence 765543
No 192
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.09 E-value=0.0066 Score=64.54 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=45.3
Q ss_pred cHHHHHHHHHHHcCCCEEEEcCCCchhhHHH--HHhHhcC------CCeEEEeCcHHHHHHHHHHHHHH
Q 011387 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK------PGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 40 ~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~--~lp~l~~------~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
.+.|+.++..++.++-+++.++.|+|||.+. ++..+.. ..++++.+||---+....+.+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 4799999999999999999999999999753 2333321 14789999998776665555433
No 193
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.04 E-value=0.0017 Score=54.76 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=12.5
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
++-+++.||+|+|||...
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 456889999999999764
No 194
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.021 Score=57.42 Aligned_cols=124 Identities=19% Similarity=0.182 Sum_probs=68.7
Q ss_pred CCEEEEcCCCchhhHHHH-HhHh-c-----CCCeEEEeC--cHHHHHHHHHHHHHH-cCCceEEecCCCCHHHHHHHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ-IPAL-A-----KPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYED 123 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lp~l-~-----~~~~~lvl~--P~~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 123 (487)
+.+++++|||+|||.+.. +.+. . .+.++.++. +.+.-+.+|...+.. +|++....
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~--------------- 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAI--------------- 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEee---------------
Confidence 457889999999997653 2221 1 234444444 445555555555444 44433211
Q ss_pred HhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC-C-CcEEEEec
Q 011387 124 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-D-VPILALTA 201 (487)
Q Consensus 124 ~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~-~~~i~lSA 201 (487)
.++.-+... .......++++||++.+... + ......+..+..... . -.++.+||
T Consensus 240 ------------------~~~~~l~~~--L~~~~~~DlVLIDTaGr~~~---~-~~~l~el~~~l~~~~~~~e~~LVlsa 295 (388)
T PRK12723 240 ------------------ESFKDLKEE--ITQSKDFDLVLVDTIGKSPK---D-FMKLAEMKELLNACGRDAEFHLAVSS 295 (388)
T ss_pred ------------------CcHHHHHHH--HHHhCCCCEEEEcCCCCCcc---C-HHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 111111111 11224588999999998642 1 112345555555432 3 35799999
Q ss_pred CCChHHHHHHHHHhc
Q 011387 202 TAAPKVQKDVMESLC 216 (487)
Q Consensus 202 T~~~~~~~~i~~~l~ 216 (487)
|.......++.....
T Consensus 296 t~~~~~~~~~~~~~~ 310 (388)
T PRK12723 296 TTKTSDVKEIFHQFS 310 (388)
T ss_pred CCCHHHHHHHHHHhc
Confidence 998877777666553
No 195
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.91 E-value=0.0059 Score=59.24 Aligned_cols=64 Identities=17% Similarity=0.108 Sum_probs=48.0
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCC--CEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCcHHHHHH
Q 011387 29 LLRWHFGHAQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIALME 92 (487)
Q Consensus 29 ~l~~~fg~~~~~~~Q~~~i~~~l~~~--dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~~L~~ 92 (487)
.-++.||+....-.|.-|++.+++.. =|.+.++-|+|||+-++-.++.+ -.++||.=|+..+-+
T Consensus 219 ~~~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~ 290 (436)
T COG1875 219 EDQEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE 290 (436)
T ss_pred CchhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc
Confidence 34478999877778888999998763 35678899999998877666643 456777778776643
No 196
>PRK08181 transposase; Validated
Probab=96.87 E-value=0.01 Score=56.71 Aligned_cols=53 Identities=25% Similarity=0.295 Sum_probs=31.8
Q ss_pred cHHHHHHHH----HHHcCCCEEEEcCCCchhhHHHH-Hh--HhcCCCeEEEeCcHHHHHHH
Q 011387 40 RDKQLDAIQ----AVLSGRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLIALMEN 93 (487)
Q Consensus 40 ~~~Q~~~i~----~~l~~~dvlv~apTGsGKTl~~~-lp--~l~~~~~~lvl~P~~~L~~q 93 (487)
...|..++. .+-.++++++.||+|+|||.... +. ++..+..+ +..+..+|+.+
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v-~f~~~~~L~~~ 148 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRV-LFTRTTDLVQK 148 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCce-eeeeHHHHHHH
Confidence 455555553 23366899999999999995432 21 23334444 44555666665
No 197
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.85 E-value=0.0048 Score=66.41 Aligned_cols=73 Identities=22% Similarity=0.170 Sum_probs=57.2
Q ss_pred CCCcHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHH--H-hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEec
Q 011387 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ--I-PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~-~dvlv~apTGsGKTl~~~--l-p~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~ 109 (487)
..+.+.|.+++..++.. ..+++.+|+|+|||.+.. + -++..+.++++++|+..-+.+..+.+...++...-+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg 232 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLG 232 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeC
Confidence 46789999999998877 567899999999995432 2 2344578999999999999999999988655544443
No 198
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.84 E-value=0.022 Score=48.35 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
++.+++.+|+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999754
No 199
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.82 E-value=0.0039 Score=59.20 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=51.2
Q ss_pred HHHHHHhcCCCcEEEEcCccccccccCC--------CcEEEEeCCCCCHHHHHHHHhccCCCCCCce
Q 011387 299 SVLDDWISSRKQVVVATVAFGMGIDRKD--------VRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (487)
Q Consensus 299 ~~~~~f~~g~~~vLVaT~~~~~GiDip~--------v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~ 357 (487)
...+.|++|+.+|+|.+++.+.||.+.. -|+-|...+|||.+..+|..||+.|.|+...
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~ 118 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSA 118 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccC
Confidence 4567899999999999999999998763 3567788999999999999999999997543
No 200
>PRK06526 transposase; Provisional
Probab=96.72 E-value=0.0096 Score=56.49 Aligned_cols=42 Identities=19% Similarity=0.123 Sum_probs=25.3
Q ss_pred HcCCCEEEEcCCCchhhHHHHH---hHhcCCCeEEEeCcHHHHHHH
Q 011387 51 LSGRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMEN 93 (487)
Q Consensus 51 l~~~dvlv~apTGsGKTl~~~l---p~l~~~~~~lvl~P~~~L~~q 93 (487)
-.++++++.||+|+|||....- -+...+..+++ ....+|+.+
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f-~t~~~l~~~ 140 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF-ATAAQWVAR 140 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh-hhHHHHHHH
Confidence 3567999999999999965431 22333444433 334445444
No 201
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.67 E-value=0.0078 Score=64.41 Aligned_cols=78 Identities=14% Similarity=0.191 Sum_probs=47.4
Q ss_pred ceEEEEecccchHHHHHHHHHhCC-------CceEEecCCCCHHHHHHHHHHHhc--------CCCcEEEEcCccccccc
Q 011387 259 TCAIVYCLERTTCDELSAYLSAGG-------ISCAAYHAGLNDKARSSVLDDWIS--------SRKQVVVATVAFGMGID 323 (487)
Q Consensus 259 ~~~iIf~~s~~~~~~l~~~L~~~g-------~~~~~~h~~l~~~~R~~~~~~f~~--------g~~~vLVaT~~~~~GiD 323 (487)
...|||.++....+++.+..+..+ .+-..+--. +..+-.+++..|.+ |-+-..||--..++|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr-~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPR-SKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccC-CccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 348999999988887755554321 111111111 22222333444432 34456777888999999
Q ss_pred cCC--CcEEEEeCCCC
Q 011387 324 RKD--VRLVCHFNIPK 337 (487)
Q Consensus 324 ip~--v~~VI~~~~p~ 337 (487)
..| -|.||..++|.
T Consensus 641 FsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPY 656 (945)
T ss_pred ccccCCceeEEecCCC
Confidence 885 68899999884
No 202
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.62 E-value=0.0033 Score=63.12 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=40.0
Q ss_pred CCcHHHHHHHHHH------HcCCCEEEEcCCCchhhHHHHH--hHhc-CCCeEEEeCcHHHHHH
Q 011387 38 QFRDKQLDAIQAV------LSGRDCFCLMPTGGGKSMCYQI--PALA-KPGIVLVVSPLIALME 92 (487)
Q Consensus 38 ~~~~~Q~~~i~~~------l~~~dvlv~apTGsGKTl~~~l--p~l~-~~~~~lvl~P~~~L~~ 92 (487)
++++-|+++++.+ .++..+++.+|-|+|||..+-. -.+. .+..+++++||-.-+.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHH
Confidence 3678899998887 5678899999999999986521 2222 3567888888854433
No 203
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.56 E-value=0.003 Score=61.86 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHh---Hhc----CCCeEEEeCcHHHHHHHHHHHHHH
Q 011387 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALA----KPGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 39 ~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp---~l~----~~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
+++-|.+++.. ...+++|.|+.|||||.+.+-- .+. ....++++++|++.+.+..+++..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 57889999988 6789999999999999875422 222 246799999999999998888877
No 204
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.52 E-value=0.00081 Score=71.22 Aligned_cols=64 Identities=17% Similarity=0.284 Sum_probs=54.7
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc---CCCcEEEEcCccccc
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS---SRKQVVVATVAFGMG 321 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~---g~~~vLVaT~~~~~G 321 (487)
.+.+++||..-.+..+-+..++...+ ....+.|..+..+|...+..|.. ...-.|.+|.+.|.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 67789999999999988999998888 77889999999999999999983 346688899987766
No 205
>PRK04296 thymidine kinase; Provisional
Probab=96.52 E-value=0.0044 Score=56.16 Aligned_cols=32 Identities=28% Similarity=0.144 Sum_probs=21.5
Q ss_pred CEEEEcCCCchhhHHHHHhH---hcCCCeEEEeCc
Q 011387 55 DCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSP 86 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~lp~---l~~~~~~lvl~P 86 (487)
=.++.+|+|+|||...+--+ ...+.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 35789999999996543222 234667777755
No 206
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.48 E-value=0.012 Score=58.07 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=26.1
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCCh
Q 011387 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (487)
Q Consensus 159 l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~ 205 (487)
=-+++|||+|++.. .+-..+.....+-.++++-||..+
T Consensus 105 ~tiLflDEIHRfnK---------~QQD~lLp~vE~G~iilIGATTEN 142 (436)
T COG2256 105 RTILFLDEIHRFNK---------AQQDALLPHVENGTIILIGATTEN 142 (436)
T ss_pred ceEEEEehhhhcCh---------hhhhhhhhhhcCCeEEEEeccCCC
Confidence 34799999999865 233335555556678888888644
No 207
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.46 E-value=0.083 Score=49.58 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
..+++.||+|+|||...
T Consensus 46 ~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 46 GYIYLWSREGAGRSHLL 62 (235)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57899999999999643
No 208
>PRK08727 hypothetical protein; Validated
Probab=96.45 E-value=0.027 Score=52.84 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=13.5
Q ss_pred CCEEEEcCCCchhhHH
Q 011387 54 RDCFCLMPTGGGKSMC 69 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~ 69 (487)
..+++.||+|+|||..
T Consensus 42 ~~l~l~G~~G~GKThL 57 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL 57 (233)
T ss_pred CeEEEECCCCCCHHHH
Confidence 3489999999999954
No 209
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.034 Score=57.10 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.5
Q ss_pred CEEEEcCCCchhhHHHHHh
Q 011387 55 DCFCLMPTGGGKSMCYQIP 73 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~lp 73 (487)
.+++.||.|+|||.++.+-
T Consensus 42 a~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3699999999999876543
No 210
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.35 E-value=0.48 Score=48.58 Aligned_cols=55 Identities=22% Similarity=0.200 Sum_probs=34.7
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHh--CCCCcEEEEecCCChHHHHHHHHHhc
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY--LPDVPILALTATAAPKVQKDVMESLC 216 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~--~~~~~~i~lSAT~~~~~~~~i~~~l~ 216 (487)
..++|+||.+-.... -......+..+... .+....++++||........+...+.
T Consensus 299 ~~DlVlIDt~G~~~~----d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 299 DCDVILIDTAGRSQR----DKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred CCCEEEEeCCCCCCC----CHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 578999999976321 12223445555442 23334789999998887777776654
No 211
>PRK06893 DNA replication initiation factor; Validated
Probab=96.33 E-value=0.016 Score=54.16 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=26.9
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhC--CCCcEEEEecCCChHHH
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQ 208 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~--~~~~~i~lSAT~~~~~~ 208 (487)
..++++|||+|.+..... .. ..+..+.+.. .+.+++++|++.++...
T Consensus 91 ~~dlLilDDi~~~~~~~~-~~---~~l~~l~n~~~~~~~~illits~~~p~~l 139 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEE-WE---LAIFDLFNRIKEQGKTLLLISADCSPHAL 139 (229)
T ss_pred cCCEEEEeChhhhcCChH-HH---HHHHHHHHHHHHcCCcEEEEeCCCChHHc
Confidence 467999999998853211 11 1222222222 14567788888776643
No 212
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.33 E-value=0.027 Score=54.13 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=55.1
Q ss_pred HHcCCCEEEEcCCCchhhHHHH-Hh--HhcC-CCeEEEeCcHHHHHHHHHHHHHHc--CCceEEec--CCCCHHHHHHHH
Q 011387 50 VLSGRDCFCLMPTGGGKSMCYQ-IP--ALAK-PGIVLVVSPLIALMENQVIGLKEK--GIAGEFLS--STQTMQVKTKIY 121 (487)
Q Consensus 50 ~l~~~dvlv~apTGsGKTl~~~-lp--~l~~-~~~~lvl~P~~~L~~q~~~~l~~~--~~~~~~~~--~~~~~~~~~~~~ 121 (487)
+..|.-+++.|++|+|||.... +. +... +..+++++--- -..+...++... ++...... ............
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE-PVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAF 105 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc-CHHHHHHHHHHHHhCCCcccCCccccccHHHHHHHH
Confidence 3456778899999999996433 22 2223 66788877321 223333333321 22221110 111112222222
Q ss_pred HHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccc
Q 011387 122 EDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (487)
Q Consensus 122 ~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~ 172 (487)
..+.. ...+ .++-.+....-......+........+++||||..+.+..
T Consensus 106 ~~~~~-~~~l-~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 106 DEFEG-TGRL-FMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHhcC-CCcE-EEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhc
Confidence 22221 1112 1121111111122333444344445689999999998864
No 213
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.32 E-value=0.0084 Score=50.47 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=24.9
Q ss_pred CCCEEEEcCCCchhhHHHHHhHhcC-CC--eEEEeCcHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQIPALAK-PG--IVLVVSPLIAL 90 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~lp~l~~-~~--~~lvl~P~~~L 90 (487)
+..+++.+|+|+|||.....-+... .. .++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 4678999999999998765333332 22 46666665433
No 214
>PF13173 AAA_14: AAA domain
Probab=96.30 E-value=0.025 Score=47.56 Aligned_cols=40 Identities=25% Similarity=0.448 Sum_probs=27.4
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCCh
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~ 205 (487)
.-.+++|||+|.+.+|. ..+..+....++.+++ +|++...
T Consensus 61 ~~~~i~iDEiq~~~~~~-------~~lk~l~d~~~~~~ii-~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWE-------DALKFLVDNGPNIKII-LTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhccHH-------HHHHHHHHhccCceEE-EEccchH
Confidence 35689999999998876 5666677766566554 4444433
No 215
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.29 E-value=0.064 Score=48.76 Aligned_cols=57 Identities=25% Similarity=0.202 Sum_probs=36.3
Q ss_pred hcCCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHh
Q 011387 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (487)
Q Consensus 155 ~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l 215 (487)
..++.++++||-+.+... -......+..+.... |.-..+.++||...+....+..+.
T Consensus 80 ~~~~~D~vlIDT~Gr~~~----d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~ 137 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGRSPR----DEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY 137 (196)
T ss_dssp HHTTSSEEEEEE-SSSST----HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH
T ss_pred hhcCCCEEEEecCCcchh----hHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh
Confidence 345688999999876432 233345566665554 445678999999887766555543
No 216
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.12 Score=51.78 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=33.8
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHh-CCCCcEEEEecCCChHHHHHHHHHhc
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLC 216 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i~~~l~ 216 (487)
..++++||-+-+... -......+..+... .|...++.+|||........+.+.+.
T Consensus 320 ~~DvVLIDTaGRs~k----d~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 320 RVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred CCCEEEEeCccccCc----CHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 578999999877542 12334455555443 34444677999887766555665543
No 217
>PRK14974 cell division protein FtsY; Provisional
Probab=96.17 E-value=0.25 Score=48.81 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=33.6
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHh-CCCCcEEEEecCCChHHHHHHHH
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVME 213 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i~~ 213 (487)
...++++||.|+++.. -...+..|..+.+. -|+..++.++||...+.......
T Consensus 221 ~~~DvVLIDTaGr~~~----~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~ 274 (336)
T PRK14974 221 RGIDVVLIDTAGRMHT----DANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE 274 (336)
T ss_pred CCCCEEEEECCCccCC----cHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH
Confidence 3478999999998742 23334455555443 35666888999887665544433
No 218
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.15 E-value=0.1 Score=45.29 Aligned_cols=34 Identities=26% Similarity=0.220 Sum_probs=22.3
Q ss_pred EEEEcCCCchhhHHHHHh---HhcCCCeEEEeCcHHH
Q 011387 56 CFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIA 89 (487)
Q Consensus 56 vlv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~~ 89 (487)
+++.+|+|+|||.....- ....++.++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 578999999999754322 2224667777765433
No 219
>PLN03025 replication factor C subunit; Provisional
Probab=96.14 E-value=0.056 Score=53.29 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=27.3
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHH
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (487)
..++++|||+|.+.... ...|......+++.-.++++++..+..
T Consensus 99 ~~kviiiDE~d~lt~~a------q~aL~~~lE~~~~~t~~il~~n~~~~i 142 (319)
T PLN03025 99 RHKIVILDEADSMTSGA------QQALRRTMEIYSNTTRFALACNTSSKI 142 (319)
T ss_pred CeEEEEEechhhcCHHH------HHHHHHHHhcccCCceEEEEeCCcccc
Confidence 47799999999986422 244555556655544556666554443
No 220
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.10 E-value=0.092 Score=50.43 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
.+++++++||-|||...
T Consensus 62 p~lLivG~snnGKT~Ii 78 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII 78 (302)
T ss_pred CceEEecCCCCcHHHHH
Confidence 48999999999999864
No 221
>PRK12377 putative replication protein; Provisional
Probab=96.07 E-value=0.041 Score=51.90 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=25.0
Q ss_pred CCEEEEcCCCchhhHHHH-Hh-HhcCCCeEEEeCcHHHHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ-IP-ALAKPGIVLVVSPLIALMEN 93 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lp-~l~~~~~~lvl~P~~~L~~q 93 (487)
..+++.+|+|+|||.... +. .+...+..++..+..+|+.+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 578999999999995432 21 22333444455566666665
No 222
>PRK06921 hypothetical protein; Provisional
Probab=96.03 E-value=0.14 Score=48.99 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=24.0
Q ss_pred CCCEEEEcCCCchhhHHHH-H-hHhcCC-CeEEEeCcHHHHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ-I-PALAKP-GIVLVVSPLIALMEN 93 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~-l-p~l~~~-~~~lvl~P~~~L~~q 93 (487)
+..+++.+|+|+|||.... + -.+... +..++.++..+++.+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 5679999999999995332 1 222222 344444455555444
No 223
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.93 E-value=0.033 Score=60.83 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCC-----CceEE-ecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 011387 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-----ISCAA-YHAGLNDKARSSVLDDWISSRKQVVVATV 316 (487)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g-----~~~~~-~h~~l~~~~R~~~~~~f~~g~~~vLVaT~ 316 (487)
...+..+..+.-...++++++.++|..-+.++++.|++.. ..+.. |||.|+.+++++++++|.+|..+|||+|+
T Consensus 110 KTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs 189 (1187)
T COG1110 110 KTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTS 189 (1187)
T ss_pred hhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeH
Confidence 3445556666556667889999999999999999887642 33333 99999999999999999999999999998
Q ss_pred ccc-cccc-cC--CCcEEEEeC
Q 011387 317 AFG-MGID-RK--DVRLVCHFN 334 (487)
Q Consensus 317 ~~~-~GiD-ip--~v~~VI~~~ 334 (487)
.|- .-.| ++ ..++|+.-|
T Consensus 190 ~FL~k~~e~L~~~kFdfifVDD 211 (1187)
T COG1110 190 QFLSKRFEELSKLKFDFIFVDD 211 (1187)
T ss_pred HHHHhhHHHhcccCCCEEEEcc
Confidence 763 3333 22 355565444
No 224
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.90 E-value=0.13 Score=50.79 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=25.3
Q ss_pred CCCEEEEcCCCchhhHHHH--HhHhcCCCeEEEeCcHHHHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIALMEN 93 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~--lp~l~~~~~~lvl~P~~~L~~q 93 (487)
++++++.||||+|||.... ...+...+..++..+..+|+.+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~ 225 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI 225 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence 5789999999999996432 1222233444444555666554
No 225
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.88 E-value=0.096 Score=46.97 Aligned_cols=47 Identities=19% Similarity=0.075 Sum_probs=31.8
Q ss_pred EEEEcCCCchhhHHHH---HhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 011387 56 CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (487)
Q Consensus 56 vlv~apTGsGKTl~~~---lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~ 103 (487)
+++.+|+|+|||...+ ...+..+..+++++.. +-..+..+.+.++|.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~~g~ 51 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAESLGW 51 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHHcCC
Confidence 6899999999997543 3344567788888653 444555666666554
No 226
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.067 Score=58.71 Aligned_cols=45 Identities=27% Similarity=0.362 Sum_probs=26.2
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHH
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (487)
+..+++||||||.+.. .....|.+.+...|..-++++..|-...+
T Consensus 118 gk~KViIIDEAh~LT~------eAqNALLKtLEEPP~~vrFILaTTe~~kL 162 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR------SSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (944)
T ss_pred CCcEEEEEechHhcCH------HHHHHHHHHHhccCCCeEEEEECCCchhc
Confidence 5678999999999864 22344444555544433444444544443
No 227
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.80 E-value=0.28 Score=53.77 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=13.5
Q ss_pred CE-EEEcCCCchhhHHH
Q 011387 55 DC-FCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dv-lv~apTGsGKTl~~ 70 (487)
++ +|.|+||+|||++.
T Consensus 782 nvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 782 QILYISGMPGTGKTATV 798 (1164)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 44 59999999999874
No 228
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.71 E-value=0.044 Score=45.87 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=13.6
Q ss_pred EEEEcCCCchhhHHHH
Q 011387 56 CFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 56 vlv~apTGsGKTl~~~ 71 (487)
+++.+|+|+|||....
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5899999999998653
No 229
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.70 E-value=0.087 Score=50.32 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
.++++.+|+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 478999999999997653
No 230
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.70 E-value=0.26 Score=51.84 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=78.0
Q ss_pred hHHHHHHHHHH----hCCCceEEEEecccchHHHHHHHHHhCCC-------ceEEecCCCCHHHHHHHHHHHh----cCC
Q 011387 244 DAYADLCSVLK----ANGDTCAIVYCLERTTCDELSAYLSAGGI-------SCAAYHAGLNDKARSSVLDDWI----SSR 308 (487)
Q Consensus 244 ~~~~~l~~~l~----~~~~~~~iIf~~s~~~~~~l~~~L~~~g~-------~~~~~h~~l~~~~R~~~~~~f~----~g~ 308 (487)
..+++|...+. .-+ +-+++|.+|.+....+.+...+.|+ +.+++-..-+ -+++++.|. .|.
T Consensus 612 ~~l~~l~~~~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~ 687 (821)
T KOG1133|consen 612 EMIKDLGSSISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGR 687 (821)
T ss_pred HHHHHHHHHHHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCC
Confidence 44455544443 335 5599999999999999998887665 3344444444 234555554 466
Q ss_pred CcEEEEc--CccccccccCC--CcEEEEeCCCC--------------------C------------HHHHHHHHhccCCC
Q 011387 309 KQVVVAT--VAFGMGIDRKD--VRLVCHFNIPK--------------------S------------MEAFYQESGRAGRD 352 (487)
Q Consensus 309 ~~vLVaT--~~~~~GiDip~--v~~VI~~~~p~--------------------s------------~~~y~Qr~GRagR~ 352 (487)
..+|.|. --+++|||+.| .|.||..++|. + +...-|-+|||-|.
T Consensus 688 GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH 767 (821)
T KOG1133|consen 688 GAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRH 767 (821)
T ss_pred CeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677775 45899999987 78899999884 1 12235899999998
Q ss_pred CCCceEEEEEec
Q 011387 353 QLPSKSLLYYGM 364 (487)
Q Consensus 353 g~~g~~i~~~~~ 364 (487)
-++=.++.+++.
T Consensus 768 ~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 768 RKDYASIYLLDK 779 (821)
T ss_pred hccceeEEEehh
Confidence 655555655543
No 231
>PRK05973 replicative DNA helicase; Provisional
Probab=95.70 E-value=0.28 Score=45.85 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=51.3
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCcHHHHHHH-----HHHH----cCCCEEEEcCCCchhhHHHH---HhHhcCCCeEEE
Q 011387 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAI-----QAVL----SGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLV 83 (487)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i-----~~~l----~~~dvlv~apTGsGKTl~~~---lp~l~~~~~~lv 83 (487)
+....++++.+.+...+ =||.+..-....+- +.+. .|.-++|.|++|+|||...+ .-+...+.++++
T Consensus 19 ~~~~~~~~~~~~~~a~~-~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vly 97 (237)
T PRK05973 19 RAQNIPLHEALDRIAAE-EGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVF 97 (237)
T ss_pred HhcCCcHHHHHHHHHHH-hccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 34566777777776665 37765433333322 1222 34567889999999997543 233445777888
Q ss_pred eCcHHHHHHHHHHHHHHcCC
Q 011387 84 VSPLIALMENQVIGLKEKGI 103 (487)
Q Consensus 84 l~P~~~L~~q~~~~l~~~~~ 103 (487)
++---. .+|..+++.++|+
T Consensus 98 fSlEes-~~~i~~R~~s~g~ 116 (237)
T PRK05973 98 FTLEYT-EQDVRDRLRALGA 116 (237)
T ss_pred EEEeCC-HHHHHHHHHHcCC
Confidence 874322 3556666666654
No 232
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.69 E-value=0.046 Score=51.92 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=40.3
Q ss_pred CCCCCcHHHHHHHHHHH-------cCCCEEEEcCCCchhhHHHHH--hHhcCCCeEEEeCcHHHHHHHHHHH
Q 011387 35 GHAQFRDKQLDAIQAVL-------SGRDCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMENQVIG 97 (487)
Q Consensus 35 g~~~~~~~Q~~~i~~~l-------~~~dvlv~apTGsGKTl~~~l--p~l~~~~~~lvl~P~~~L~~q~~~~ 97 (487)
.+......++.++..+. +++++++.||+|+|||..+.. -.+.+.+.-+.++++.+|+.+....
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 34444445555554433 567999999999999964431 1223556777778888888774433
No 233
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.69 E-value=0.029 Score=53.35 Aligned_cols=34 Identities=21% Similarity=0.125 Sum_probs=24.7
Q ss_pred HHHHHHHHHHc------CCCEEEEcCCCchhhHHHHHhHh
Q 011387 42 KQLDAIQAVLS------GRDCFCLMPTGGGKSMCYQIPAL 75 (487)
Q Consensus 42 ~Q~~~i~~~l~------~~dvlv~apTGsGKTl~~~lp~l 75 (487)
.|..++..+.+ .-+.+..+|.|+|||-+..+.+-
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar 79 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFAR 79 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHH
Confidence 67777766542 23689999999999988765443
No 234
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.68 E-value=0.034 Score=60.71 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=65.6
Q ss_pred CCceEEEEecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-cccccccCCCcEEE
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~-~~~GiDip~v~~VI 331 (487)
.+.+++|.++|+.-+.+.++.+++ .|+++..+||+++..+|.++++.+.+|+.+|+|+|.+ +...+.++++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 466899999999999988887765 4789999999999999999999999999999999986 44567788888887
Q ss_pred E
Q 011387 332 H 332 (487)
Q Consensus 332 ~ 332 (487)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 3
No 235
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.67 E-value=0.015 Score=51.96 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=24.6
Q ss_pred cCCCEEEEcCCCchhhHHHHH---hHhcCCCeEEEeCcHHHHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMEN 93 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~l---p~l~~~~~~lvl~P~~~L~~q 93 (487)
+++++++.+|+|+|||..+.. .++. .+..+..++..+|+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFITASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEeecCceecc
Confidence 467899999999999965432 2233 4444445566677655
No 236
>PRK08116 hypothetical protein; Validated
Probab=95.66 E-value=0.18 Score=48.28 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=22.8
Q ss_pred CEEEEcCCCchhhHHHHH--hHhcCCCeEEEeCcHHHHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMEN 93 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~l--p~l~~~~~~lvl~P~~~L~~q 93 (487)
.+++.|++|+|||..... -.+...+..++..+..+++.+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 489999999999965432 112222333444455555544
No 237
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.64 E-value=0.081 Score=57.68 Aligned_cols=77 Identities=21% Similarity=0.186 Sum_probs=65.5
Q ss_pred CCceEEEEecccchHHHHHHHHHh-CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~-~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~ 334 (487)
.+.++||.++++..+.++.+.|++ .|..+..+||+++..+|.+...+..+|+.+|+|+|..... +.++++.+||...
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 356899999999999999999987 4788999999999999999988899999999999975332 5567888888655
No 238
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.61 E-value=0.23 Score=46.70 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=23.1
Q ss_pred CCEEEEcCCCchhhHHHH-H-hHhcCCCeEEEeCcHHHHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ-I-PALAKPGIVLVVSPLIALMEN 93 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-l-p~l~~~~~~lvl~P~~~L~~q 93 (487)
..+++.+++|+|||.... + -.+...+..+++.+..+|+..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 468999999999995432 1 122333333444455555443
No 239
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=95.56 E-value=0.011 Score=59.91 Aligned_cols=56 Identities=25% Similarity=0.342 Sum_probs=46.2
Q ss_pred CEEEEcCCCchhhHHHHHhHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceEEecC
Q 011387 55 DCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~ 110 (487)
+++++||||+|||.++.+|.+.. .+.+||+-|--++........+..|-.+..++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~nP 57 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFDP 57 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEcC
Confidence 57899999999999999998765 778999999999998877777777766666554
No 240
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.1 Score=50.79 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=32.4
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCCEEEEcCCCchhhHHH
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l--~~~dvlv~apTGsGKTl~~ 70 (487)
+...+.+.+-.++..+.+++.--.. -.+-+.+..+- --+-|++.+|+|+|||+.+
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELP---L~~PElF~~~GI~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELP---LKNPELFEELGIDPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhccc---ccCHHHHHHcCCCCCCceEeeCCCCCcHHHHH
Confidence 4445556666666666666543221 11222222221 1378999999999999976
No 241
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.38 E-value=0.12 Score=48.19 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchhhHH
Q 011387 53 GRDCFCLMPTGGGKSMC 69 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~ 69 (487)
++.+++.||+|+|||..
T Consensus 42 ~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45789999999999954
No 242
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.33 Score=48.61 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
.++++.+|||+|||.+.
T Consensus 43 ~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 43 SNIIIYGPTGTGKTATV 59 (366)
T ss_pred ccEEEECCCCCCHhHHH
Confidence 36999999999999864
No 243
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.35 E-value=0.15 Score=55.65 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=24.4
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCCh
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~ 205 (487)
.-.+++|||+|.+... ....+.....+..+++++||..+
T Consensus 109 ~~~IL~IDEIh~Ln~~---------qQdaLL~~lE~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFNKA---------QQDALLPWVENGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCCHH---------HHHHHHHHhcCceEEEEEecCCC
Confidence 3568999999997541 12234444445667777777543
No 244
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.34 E-value=0.56 Score=46.87 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=36.6
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCC-cEEEEecCCChHHHHHHHHHhcCC
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV-PILALTATAAPKVQKDVMESLCLQ 218 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~-~~i~lSAT~~~~~~~~i~~~l~~~ 218 (487)
.+.++|.||=+-+-.. -.....+|..+...-++. -.+.+|||.-..+...+...+..-
T Consensus 280 ~~~d~ILVDTaGrs~~----D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~ 338 (407)
T COG1419 280 RDCDVILVDTAGRSQY----DKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLF 338 (407)
T ss_pred hcCCEEEEeCCCCCcc----CHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccC
Confidence 4468899998875321 122224455554443333 358999999999888888877643
No 245
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.30 E-value=0.075 Score=62.11 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=41.9
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchhhHHH--HHhHh---c--CCCeEEEeCcHHHHHHH
Q 011387 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCY--QIPAL---A--KPGIVLVVSPLIALMEN 93 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~--~dvlv~apTGsGKTl~~--~lp~l---~--~~~~~lvl~P~~~L~~q 93 (487)
.|++.|++++..++.+ +-+++.+..|+|||... ++.++ . .+..++.++||-.-+..
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~ 899 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGE 899 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHH
Confidence 6999999999999965 56789999999999763 22222 1 24568889998766544
No 246
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.29 E-value=0.05 Score=58.58 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=26.9
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChH
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (487)
+..+++||||+|.+.... ...|.+.+...+..-.++|++|-...
T Consensus 118 gr~KVIIIDEah~LT~~A------~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA------FNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred CCceEEEEeChhhCCHHH------HHHHHHHHHhcCCCeEEEEEECChhh
Confidence 457899999999997522 23444455555544455555554443
No 247
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.27 E-value=0.54 Score=47.63 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=66.2
Q ss_pred CEEEEcCCCchhhHHHH-HhH---hcCCCeEEEeC--cHHHHHHHHHHHHHH-cCCceEEecCCCCHHHHHHHHHHHhcC
Q 011387 55 DCFCLMPTGGGKSMCYQ-IPA---LAKPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp~---l~~~~~~lvl~--P~~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (487)
-+++++|+|+|||.... +.. +..+.++.++. +.+..+.+|...+.. .+++.....
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~------------------ 286 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK------------------ 286 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehH------------------
Confidence 36789999999997654 322 23344554444 555555555555432 333221100
Q ss_pred CCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhC----CCCcEEEEecCC
Q 011387 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL----PDVPILALTATA 203 (487)
Q Consensus 128 ~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~----~~~~~i~lSAT~ 203 (487)
....+.........++++||=+-.... -......+..+.... |.-.++.++||.
T Consensus 287 ------------------~~~~l~~~l~~~~~D~VLIDTaGr~~r----d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 287 ------------------DIKKFKETLARDGSELILIDTAGYSHR----NLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred ------------------HHHHHHHHHHhCCCCEEEEeCCCCCcc----CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 011111112224578899997665321 123345555555543 234578999999
Q ss_pred ChHHHHHHHHHhc
Q 011387 204 APKVQKDVMESLC 216 (487)
Q Consensus 204 ~~~~~~~i~~~l~ 216 (487)
......++.....
T Consensus 345 ~~~~~~~~~~~f~ 357 (432)
T PRK12724 345 SYHHTLTVLKAYE 357 (432)
T ss_pred CHHHHHHHHHHhc
Confidence 9877676666553
No 248
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.22 E-value=0.079 Score=54.28 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=15.7
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (487)
..+++.||+|+|||.....
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3789999999999976643
No 249
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.20 E-value=0.22 Score=49.96 Aligned_cols=94 Identities=23% Similarity=0.201 Sum_probs=51.0
Q ss_pred HHHHHHcC-----CCEEEEcCCCchhhHHHH-HhH--hcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHH
Q 011387 46 AIQAVLSG-----RDCFCLMPTGGGKSMCYQ-IPA--LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVK 117 (487)
Q Consensus 46 ~i~~~l~~-----~dvlv~apTGsGKTl~~~-lp~--l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~ 117 (487)
-++.++.| .-+++.+++|+|||...+ +.. ...++++++++-..+ ..|...+..++++...
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg~~~~----------- 137 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLGISTE----------- 137 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcCCCcc-----------
Confidence 44555543 457889999999997543 221 123567888765322 2344444444443210
Q ss_pred HHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEecccccc
Q 011387 118 TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (487)
Q Consensus 118 ~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~ 171 (487)
++.+. ....+..+.+.......+++|||+++.+.
T Consensus 138 --------------~l~l~------~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 138 --------------NLYLL------AETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred --------------cEEEE------ccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 11111 11123334333344568999999999874
No 250
>PRK04195 replication factor C large subunit; Provisional
Probab=95.20 E-value=0.13 Score=53.71 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
.+.+++.||+|+|||....
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4678999999999997653
No 251
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.18 E-value=0.12 Score=54.14 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=64.7
Q ss_pred CCceEEEEecccchHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~ 334 (487)
.+.++||.++++.-+.++++.|++. |..+..+||+++..+|.+......+|+.+|+|+|..+-. ..++++..||.-.
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 4567999999999999999999864 778999999999999999888888999999999975432 4566888888544
No 252
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.16 E-value=0.37 Score=48.22 Aligned_cols=55 Identities=20% Similarity=0.183 Sum_probs=31.2
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHh
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l 215 (487)
...++++||++-.... -......+..+.... +.-.++.++||.......++...+
T Consensus 214 ~~~DlVLIDTaG~~~~----d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 214 RNKHMVLIDTIGMSQR----DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred cCCCEEEEcCCCCCcc----cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 3468999999975321 011122333332221 223488999999888776665543
No 253
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.14 E-value=0.2 Score=50.28 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
.++++.||+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999764
No 254
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.25 Score=50.53 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=31.2
Q ss_pred cCCccEEEEecccccccc---CCCChHHHH-HHHHHHHhCC--CCcEEEEecCCChHH
Q 011387 156 RGLLNLVAIDEAHCISSW---GHDFRPSYR-KLSSLRNYLP--DVPILALTATAAPKV 207 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~---g~~f~~~~~-~l~~l~~~~~--~~~~i~lSAT~~~~~ 207 (487)
.+.++++|+|+..++.+| |+.|..... .|..+.++.| +.+.+.+..|....+
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~v 653 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREV 653 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHH
Confidence 345889999999999997 445554433 2334444444 335555555544443
No 255
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.07 E-value=0.23 Score=46.62 Aligned_cols=43 Identities=19% Similarity=0.049 Sum_probs=28.0
Q ss_pred cCCCEEEEcCCCchhhHHHH---HhHhcC-CCeEEEeC---cHHHHHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ---IPALAK-PGIVLVVS---PLIALMENQ 94 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~---lp~l~~-~~~~lvl~---P~~~L~~q~ 94 (487)
.|.-+++.|++|+|||...+ .-.... +..+++++ |..+++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHH
Confidence 34567889999999996433 222233 77888888 444555543
No 256
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.06 E-value=0.12 Score=54.93 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=28.9
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHH
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~ 212 (487)
.+..+++||||+|.+.... ...|-+.+...|..-+++|..|-...+...|.
T Consensus 122 ~gr~KViIIDEah~Ls~~A------aNALLKTLEEPP~~v~FILaTtep~kLlpTIr 172 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHA------FNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 172 (700)
T ss_pred cCCceEEEEEChHhcCHHH------HHHHHHhhccCCCCceEEEEeCChHhhhhHHH
Confidence 4568899999999997522 23333334444433345555555555444443
No 257
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.98 E-value=0.26 Score=50.92 Aligned_cols=95 Identities=22% Similarity=0.214 Sum_probs=52.8
Q ss_pred HHHHHHc-----CCCEEEEcCCCchhhHHHH-HhH--hcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHH
Q 011387 46 AIQAVLS-----GRDCFCLMPTGGGKSMCYQ-IPA--LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVK 117 (487)
Q Consensus 46 ~i~~~l~-----~~dvlv~apTGsGKTl~~~-lp~--l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~ 117 (487)
-++.++. |.-+++.+++|+|||...+ +.. ...+.++++++-. +-..|...+..+++....
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E-es~~qi~~ra~rlg~~~~----------- 135 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE-ESASQIKLRAERLGLPSD----------- 135 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-ccHHHHHHHHHHcCCChh-----------
Confidence 3455554 3457889999999996432 222 1346788888743 333454445555543210
Q ss_pred HHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccc
Q 011387 118 TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (487)
Q Consensus 118 ~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~ 172 (487)
++.+. ....+..+.+.......+++|||+.+.+..
T Consensus 136 --------------~l~~~------~e~~l~~i~~~i~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 136 --------------NLYLL------AETNLEAILATIEEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred --------------cEEEe------CCCCHHHHHHHHHhhCCCEEEEechhhhcc
Confidence 01111 111233444444445688999999998753
No 258
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.97 E-value=0.26 Score=50.86 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=25.2
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHH
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (487)
..++++|||+|.+..+...-+..+..+..+.. .+.+ +++|++.++..
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~--~~k~-IIlts~~~p~~ 248 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHT--EGKL-IVISSTCAPQD 248 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHH--CCCc-EEEecCCCHHH
Confidence 47899999999986533222222222333322 2444 55666555443
No 259
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.91 Score=47.35 Aligned_cols=55 Identities=25% Similarity=0.143 Sum_probs=31.9
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHh
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 215 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l 215 (487)
...++|+||.+-..... ......+..+........+++++++........+.+.+
T Consensus 427 ~~~DLVLIDTaG~s~~D----~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRD----RALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred ccCCEEEecCCCcchhh----HHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHHH
Confidence 35789999999764221 11122333344333445678888888765555555443
No 260
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.97 E-value=0.067 Score=57.92 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=64.7
Q ss_pred CCceEEEEecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc-ccccccCCCcEEE
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMGIDRKDVRLVC 331 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~-~~GiDip~v~~VI 331 (487)
.+.+++|.++|+.-++++++.+++ .|+++..+||+++..+|...++...+|+.+|+|+|.+. ...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 456899999999999998887765 37899999999999999999999999999999999864 4457777888887
No 261
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.95 E-value=0.21 Score=49.38 Aligned_cols=33 Identities=18% Similarity=0.085 Sum_probs=26.6
Q ss_pred CCcHHHHHHHHHHHcC----CCEEEEcCCCchhhHHH
Q 011387 38 QFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~----~dvlv~apTGsGKTl~~ 70 (487)
.++|+|...+..+... +-.++.+|.|.|||..+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A 39 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA 39 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH
Confidence 4589999999888754 24789999999999654
No 262
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.95 E-value=0.02 Score=59.82 Aligned_cols=57 Identities=30% Similarity=0.462 Sum_probs=47.3
Q ss_pred CCEEEEcCCCchhhHHHHHhHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceEEecC
Q 011387 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~ 110 (487)
.+++++||||||||..+.+|.+.. .+.+||.-|--+|.......+++.|-++..++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vldp 102 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVLDP 102 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEeec
Confidence 369999999999999999998765 668888889999999888888887766655543
No 263
>PRK05642 DNA replication initiation factor; Validated
Probab=94.93 E-value=0.17 Score=47.42 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=24.8
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChH
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPK 206 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~ 206 (487)
..++++||++|.+..... .. ..+..+.+.+. +-..+++|++.++.
T Consensus 97 ~~d~LiiDDi~~~~~~~~-~~---~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 97 QYELVCLDDLDVIAGKAD-WE---EALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred hCCEEEEechhhhcCChH-HH---HHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 357899999998753211 11 22333443332 23457777776554
No 264
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.92 E-value=0.52 Score=49.00 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=29.5
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHH
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~ 212 (487)
+..+++||||+|.+... ....|.+.....|..-++.|.+|-...+...+.
T Consensus 115 ~~~KVvIIDEah~Ls~~------A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~ 164 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNS------AFNALLKTLEEPAPHVKFILATTEVKKIPVTII 164 (491)
T ss_pred CCceEEEEeChHhCCHH------HHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHH
Confidence 45789999999998652 223444455554544345555565555444333
No 265
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.91 E-value=0.21 Score=54.00 Aligned_cols=90 Identities=26% Similarity=0.226 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHhC--CCceEEEEecccchHHHHHHHHHhC-C-CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc
Q 011387 244 DAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-G-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (487)
Q Consensus 244 ~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~-g-~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~ 319 (487)
.+-+...++++.. .++.+||.++....+.++.+.|++. | ..+..+|+++++.+|.+...+..+|+.+|+|.|-.+
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA- 250 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA- 250 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee-
Confidence 3444444444332 4667999999999999999999874 4 578999999999999999999999999999999753
Q ss_pred cccccCCCcEEEEeC
Q 011387 320 MGIDRKDVRLVCHFN 334 (487)
Q Consensus 320 ~GiDip~v~~VI~~~ 334 (487)
.=.-+++...||..+
T Consensus 251 vFaP~~~LgLIIvdE 265 (665)
T PRK14873 251 VFAPVEDLGLVAIWD 265 (665)
T ss_pred EEeccCCCCEEEEEc
Confidence 223455677777544
No 266
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.85 E-value=0.026 Score=60.07 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=49.5
Q ss_pred CCEEEEcCCCchhhHHHHHhHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCC
Q 011387 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSST 111 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~ 111 (487)
.++++.||||||||..+.+|.+.. ++.+||+=|--++...+....++.|-++..++..
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfdP~ 217 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWEPA 217 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 578999999999999999998766 7789999999999999888888888766665543
No 267
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.84 E-value=0.5 Score=46.40 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=24.4
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCCh
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~ 205 (487)
..+++||||+|.+.. ......+..+....+....+++|++...
T Consensus 100 ~~~vliiDe~d~l~~-----~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 100 GGKVIIIDEFDRLGL-----ADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred CCeEEEEECcccccC-----HHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 467899999998732 1122345555555554334555555433
No 268
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.83 E-value=0.91 Score=43.42 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=34.1
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHh
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l 215 (487)
...++++||.+-+... -......+..+.... |...++.++||.......++.+.+
T Consensus 153 ~~~D~ViIDt~Gr~~~----~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f 208 (270)
T PRK06731 153 ARVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 208 (270)
T ss_pred CCCCEEEEECCCCCcC----CHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHh
Confidence 4589999999987532 123344455554433 333467899998776665565554
No 269
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.81 E-value=0.27 Score=48.17 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=27.6
Q ss_pred CCCCcHHHHHHHHHHH----cCC---CEEEEcCCCchhhHHH
Q 011387 36 HAQFRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 36 ~~~~~~~Q~~~i~~~l----~~~---dvlv~apTGsGKTl~~ 70 (487)
++.++|+|..++..+. .|+ -.++.+|.|.||+..+
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA 43 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA 43 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH
Confidence 3678999999998765 333 4789999999999654
No 270
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.74 E-value=0.34 Score=50.69 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=16.2
Q ss_pred CCEEEEcCCCchhhHHHHHh
Q 011387 54 RDCFCLMPTGGGKSMCYQIP 73 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp 73 (487)
+.+++.||.|+|||.++.+-
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999876543
No 271
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.74 E-value=0.33 Score=55.09 Aligned_cols=57 Identities=25% Similarity=0.140 Sum_probs=41.6
Q ss_pred CCCcHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHHH--hHh-cCCCeEEEeCcHHHHHHH
Q 011387 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQI--PAL-AKPGIVLVVSPLIALMEN 93 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~-~dvlv~apTGsGKTl~~~l--p~l-~~~~~~lvl~P~~~L~~q 93 (487)
..|++-|.+++..+..+ +-+++.++.|+|||...-. -++ ..+..++.++|+-.-+..
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~ 440 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEG 440 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHH
Confidence 36999999999988654 4568899999999975321 222 247788999998655443
No 272
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.72 E-value=0.28 Score=49.33 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=14.2
Q ss_pred CEEEEcCCCchhhHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (487)
.+++.||.|+|||....
T Consensus 40 ~~L~~Gp~G~GKTtla~ 56 (363)
T PRK14961 40 AWLLSGTRGVGKTTIAR 56 (363)
T ss_pred EEEEecCCCCCHHHHHH
Confidence 35899999999997654
No 273
>CHL00176 ftsH cell division protein; Validated
Probab=94.68 E-value=0.48 Score=51.07 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
+.+++.+|+|+|||+...
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999998653
No 274
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.67 E-value=1.8 Score=52.91 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=41.8
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHH--HhHhc-CCCeEEEeCcHHHHHHH
Q 011387 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALMEN 93 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~--~dvlv~apTGsGKTl~~~--lp~l~-~~~~~lvl~P~~~L~~q 93 (487)
.+++.|++++..++.. +-.++.++.|+|||.... .-++. .+..+++++|+-.-+..
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~ 489 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQE 489 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 4889999999998875 456789999999996532 22222 37789999999765544
No 275
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.26 Score=50.51 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=38.0
Q ss_pred hHHHHHhhhhcCCccEEEEeccccccccCCCChHHH--HHHHHHHHhC----CCCcEEEEecCCChHHHH
Q 011387 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNYL----PDVPILALTATAAPKVQK 209 (487)
Q Consensus 146 ~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~--~~l~~l~~~~----~~~~~i~lSAT~~~~~~~ 209 (487)
+...|......+-...|.|||.|.+..--..-...| ..|..+...+ ++-.+|.+-||--++..+
T Consensus 384 RVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 384 RVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred HHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 444555444455577899999999865211111112 2233443332 367899999998877654
No 276
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.60 E-value=0.85 Score=46.30 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
.++++.||+|+|||...
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999764
No 277
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.60 E-value=1.7 Score=49.10 Aligned_cols=57 Identities=26% Similarity=0.150 Sum_probs=42.4
Q ss_pred CCCCCcHHHHHHHHHHHcCCC-EEEEcCCCchhhHHHH--HhHhc-CCCeEEEeCcHHHHHH
Q 011387 35 GHAQFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALME 92 (487)
Q Consensus 35 g~~~~~~~Q~~~i~~~l~~~d-vlv~apTGsGKTl~~~--lp~l~-~~~~~lvl~P~~~L~~ 92 (487)
|+ .|++-|++++..++.+++ +++.++.|+|||.... .-++. .+..++.++||---+.
T Consensus 344 g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~ 404 (988)
T PRK13889 344 GL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAE 404 (988)
T ss_pred CC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHH
Confidence 44 599999999999998765 5789999999997522 11222 3778999999866543
No 278
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.58 E-value=0.17 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=17.0
Q ss_pred CCEEEEcCCCchhhHHHHHhHh
Q 011387 54 RDCFCLMPTGGGKSMCYQIPAL 75 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l 75 (487)
..+++++|+|+|||..+-+-+-
T Consensus 163 pSmIlWGppG~GKTtlArlia~ 184 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIAS 184 (554)
T ss_pred CceEEecCCCCchHHHHHHHHh
Confidence 3789999999999976644443
No 279
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.58 E-value=0.36 Score=51.86 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=15.1
Q ss_pred CEEEEcCCCchhhHHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (487)
.+|+.+|.|+|||.+..+
T Consensus 40 a~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARI 57 (709)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 579999999999987643
No 280
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.52 E-value=1.2 Score=49.12 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=41.4
Q ss_pred CCcHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHH--HhHhc-CCCeEEEeCcHHHHHHH
Q 011387 38 QFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALMEN 93 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~-~dvlv~apTGsGKTl~~~--lp~l~-~~~~~lvl~P~~~L~~q 93 (487)
.+++.|++++..++.+ +-+++.++.|+|||...- .-++. .+..+++++||--.+..
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEG 411 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHH
Confidence 5899999999999875 556899999999996532 12222 37788899998655443
No 281
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.51 E-value=0.38 Score=49.86 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.2
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
..+++.||+|+|||...
T Consensus 149 ~~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL 165 (450)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999654
No 282
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.51 E-value=0.17 Score=53.73 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (487)
+-.++.||.|+|||.++-+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3468899999999987643
No 283
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.49 Score=45.07 Aligned_cols=119 Identities=16% Similarity=0.214 Sum_probs=64.0
Q ss_pred HHHHcCC-----CEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHH
Q 011387 48 QAVLSGR-----DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122 (487)
Q Consensus 48 ~~~l~~~-----dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 122 (487)
|++..|+ -+++.+|+|+|||-.+-.-+-..+ .+.+-+....|+..|.-+-.+
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLvSKWmGESEk---------------------- 212 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLVSKWMGESEK---------------------- 212 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHHHHHhccHHH----------------------
Confidence 4556664 589999999999854433333334 455555555665554322111
Q ss_pred HHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChH-HHHHH-HHHHHhCC-----CCc
Q 011387 123 DLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP-SYRKL-SSLRNYLP-----DVP 195 (487)
Q Consensus 123 ~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~-~~~~l-~~l~~~~~-----~~~ 195 (487)
....|.........+.|.|||+|.+...+.+-+. +.+++ ..+.-++. +--
T Consensus 213 -----------------------LVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 213 -----------------------LVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred -----------------------HHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 1122333333445778999999987653322211 11121 12222222 335
Q ss_pred EEEEecCCChHHHHHHH
Q 011387 196 ILALTATAAPKVQKDVM 212 (487)
Q Consensus 196 ~i~lSAT~~~~~~~~i~ 212 (487)
++.+-||-.|.+....+
T Consensus 270 vLVLgATNiPw~LDsAI 286 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAI 286 (439)
T ss_pred eEEEecCCCchhHHHHH
Confidence 88899998776554433
No 284
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.48 E-value=0.48 Score=48.66 Aligned_cols=147 Identities=20% Similarity=0.176 Sum_probs=64.8
Q ss_pred CCCEEEEcCCCchhhHHHHHhH----hcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceEEec-CCCCHHHHHHHHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLS-STQTMQVKTKIYEDL 124 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~lp~----l~~~~~~lvl~---P~~~L~~q~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~ 124 (487)
|.=+++.|+||+|||...+--+ +..+..+++++ |...|+....... .++....+. +.....+........
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~~--~~v~~~~~~~~~l~~~~~~~~~~~~ 271 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASK--SGINTGNIRTGRFNDSDFNRLLNAV 271 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHH--cCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 3456778899999997544222 23466788887 3444443332221 233322221 122222222211111
Q ss_pred hcCCCcccEEEeCcccccChhhHHHHHhhhh-cCCccEEEEeccccccc-cCCCChHHH----HHHHHHHHhCCCCcEEE
Q 011387 125 DSGKPSLRLLYVTPELTATPGFMSKLKKIHS-RGLLNLVAIDEAHCISS-WGHDFRPSY----RKLSSLRNYLPDVPILA 198 (487)
Q Consensus 125 ~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~-~~~l~~lViDEah~~~~-~g~~f~~~~----~~l~~l~~~~~~~~~i~ 198 (487)
..- ....+.+.-..-+..........+... .+.+++||||=.|.+.. .+.+-...+ +.|..+.+.+ ++|+++
T Consensus 272 ~~l-~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~-~i~Vi~ 349 (421)
T TIGR03600 272 DRL-SEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKEL-DVPVVL 349 (421)
T ss_pred HHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHh-CCcEEE
Confidence 110 012232222111211222222232222 23689999999888864 222211111 1222222222 788888
Q ss_pred EecCC
Q 011387 199 LTATA 203 (487)
Q Consensus 199 lSAT~ 203 (487)
+|-..
T Consensus 350 lsQln 354 (421)
T TIGR03600 350 LAQLN 354 (421)
T ss_pred ecccC
Confidence 87653
No 285
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.48 E-value=0.2 Score=46.43 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
+..+++.||+|+|||...
T Consensus 38 ~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999754
No 286
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.43 E-value=0.24 Score=54.83 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=27.5
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChH
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (487)
+..+++||||+|.|...+ ...|.+++...|..-+++|..|-...
T Consensus 119 ~~~KV~IIDEad~lt~~a------~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG------FNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred CCceEEEEechhhcCHHH------HHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 457899999999997532 34555566666544444454454433
No 287
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.38 E-value=0.83 Score=42.69 Aligned_cols=51 Identities=18% Similarity=0.087 Sum_probs=31.9
Q ss_pred cCCCEEEEcCCCchhhHHH-HH--hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 011387 52 SGRDCFCLMPTGGGKSMCY-QI--PALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~-~l--p~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~ 103 (487)
.|.-+++.+++|+|||... ++ -.+..+.++++++... -..+..+.+.++|.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~-~~~~~~~~~~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL-TTTEFIKQMMSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHHHhCC
Confidence 4667889999999999763 22 2334567888887432 22444444555443
No 288
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.36 E-value=0.23 Score=51.88 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=43.7
Q ss_pred HHHHHHHHHHH-----cC----CCEEEEcCCCchhhHHHHHhHh-------cCCCeEEEeCcHHHHHHHHHHHHHHc
Q 011387 41 DKQLDAIQAVL-----SG----RDCFCLMPTGGGKSMCYQIPAL-------AKPGIVLVVSPLIALMENQVIGLKEK 101 (487)
Q Consensus 41 ~~Q~~~i~~~l-----~~----~dvlv~apTGsGKTl~~~lp~l-------~~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (487)
|+|+-++..++ .| +.+++..|=|.|||......++ ..+..+++.++++.-+...++.+..+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 56776666665 22 4688888999999965432221 12567999999999999988887774
No 289
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.34 E-value=0.45 Score=50.04 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
+.+++.+|+|+|||...-
T Consensus 89 ~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999998653
No 290
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=94.31 E-value=0.048 Score=58.79 Aligned_cols=57 Identities=25% Similarity=0.245 Sum_probs=47.3
Q ss_pred CCEEEEcCCCchhhHHHHHhHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceEEecC
Q 011387 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~ 110 (487)
.+++++||||||||..+.+|.+.. ++.+||+=|--++........++.|-.+..++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~FnP 197 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKFAP 197 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEecC
Confidence 489999999999999999998766 678999999999988887777777766655443
No 291
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.30 E-value=0.44 Score=45.50 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=20.3
Q ss_pred HHHHHHHHHHH----cCC-CEEEEcCCCchhhHHHH
Q 011387 41 DKQLDAIQAVL----SGR-DCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 41 ~~Q~~~i~~~l----~~~-dvlv~apTGsGKTl~~~ 71 (487)
+.+.+++..+. .+. .+++.||+|+|||....
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 34445554432 233 57899999999997654
No 292
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.26 E-value=0.18 Score=61.18 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=41.6
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEcCCCchhhHHH------HHhHhc-CCCeEEEeCcHHHHHHH
Q 011387 37 AQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCY------QIPALA-KPGIVLVVSPLIALMEN 93 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~--~dvlv~apTGsGKTl~~------~lp~l~-~~~~~lvl~P~~~L~~q 93 (487)
..+++.|++++..++.+ +-++|.++.|+|||... +..+.. .+..++.++||-.-+..
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~ 1083 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGE 1083 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHH
Confidence 36899999999998876 44577899999999765 112222 36678889999665543
No 293
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.24 E-value=0.098 Score=48.06 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.2
Q ss_pred CEEEEcCCCchhhHHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (487)
++++.+|+|.|||..+.+
T Consensus 52 h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred eEEEECCCccchhHHHHH
Confidence 689999999999976543
No 294
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.20 E-value=0.42 Score=51.66 Aligned_cols=133 Identities=19% Similarity=0.189 Sum_probs=72.5
Q ss_pred CCcHHHHHHHHHHHcCC--CEEEEcCCCchhhHHHHHh---HhcCC--CeEEEeCcHHHHHHHHHHHHH----HcCCceE
Q 011387 38 QFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQIP---ALAKP--GIVLVVSPLIALMENQVIGLK----EKGIAGE 106 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~--dvlv~apTGsGKTl~~~lp---~l~~~--~~~lvl~P~~~L~~q~~~~l~----~~~~~~~ 106 (487)
....-|.+.+..+++.+ -+++.|.-|=|||.+.-+. +.... ..++|.+|+.+-++..++.+. .+|.+-.
T Consensus 214 ~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~ 293 (758)
T COG1444 214 EDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRK 293 (758)
T ss_pred hhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccc
Confidence 33334444555566553 4678999999999765432 22223 489999999887776655543 3443321
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHH
Q 011387 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (487)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~ 186 (487)
..-..... -.........|-|..|.... . .-+++|||||=-+-- .-|..
T Consensus 294 v~~d~~g~--------~~~~~~~~~~i~y~~P~~a~-~-------------~~DllvVDEAAaIpl---------plL~~ 342 (758)
T COG1444 294 VAPDALGE--------IREVSGDGFRIEYVPPDDAQ-E-------------EADLLVVDEAAAIPL---------PLLHK 342 (758)
T ss_pred cccccccc--------eeeecCCceeEEeeCcchhc-c-------------cCCEEEEehhhcCCh---------HHHHH
Confidence 11110000 00001122445566655332 1 157899999987632 23333
Q ss_pred HHHhCCCCcEEEEecCCC
Q 011387 187 LRNYLPDVPILALTATAA 204 (487)
Q Consensus 187 l~~~~~~~~~i~lSAT~~ 204 (487)
+... .+.++||.|..
T Consensus 343 l~~~---~~rv~~sTTIh 357 (758)
T COG1444 343 LLRR---FPRVLFSTTIH 357 (758)
T ss_pred HHhh---cCceEEEeeec
Confidence 4443 35788888864
No 295
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.16 E-value=0.21 Score=59.31 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=45.2
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHH--HhHhc-----CCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 011387 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ--IPALA-----KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~--~dvlv~apTGsGKTl~~~--lp~l~-----~~~~~lvl~P~~~L~~q~~~~l~~~~~~~ 105 (487)
.+++.|++++..++.+ +-+++.+..|+|||...- +.++. .+..++.++||-.-+.. |+..|+.+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~----L~e~Gi~A 1039 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGE----MRSAGVDA 1039 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHH----HHhcCcch
Confidence 5899999999999975 456889999999997642 22221 24568889999766553 44445543
No 296
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.16 E-value=0.61 Score=50.19 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (487)
..+++.||.|+|||..+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 4579999999999976543
No 297
>PRK06904 replicative DNA helicase; Validated
Probab=94.14 E-value=1.2 Score=46.27 Aligned_cols=145 Identities=22% Similarity=0.241 Sum_probs=63.2
Q ss_pred CCEEEEcCCCchhhHHHH-H---hHhcCCCeEEEeCcHHHHHHHHHHHHHHc--CCceEEe-cC-CCCHHHHHHHHHHHh
Q 011387 54 RDCFCLMPTGGGKSMCYQ-I---PALAKPGIVLVVSPLIALMENQVIGLKEK--GIAGEFL-SS-TQTMQVKTKIYEDLD 125 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-l---p~l~~~~~~lvl~P~~~L~~q~~~~l~~~--~~~~~~~-~~-~~~~~~~~~~~~~~~ 125 (487)
.=+++.|.||.|||...+ + .+...+..+++++.- .-..|.+.++-.. ++....+ .+ .....+...+.....
T Consensus 222 ~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a~~ 300 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISSTVG 300 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHHHHH
Confidence 345667799999997543 1 122346677777643 2223344443331 2222222 22 233333322222111
Q ss_pred cCCCcccEEEeCcccccChh-hHHHHHhhhh-cCCccEEEEeccccccccCC-CChH-HHH----HHHHHHHhCCCCcEE
Q 011387 126 SGKPSLRLLYVTPELTATPG-FMSKLKKIHS-RGLLNLVAIDEAHCISSWGH-DFRP-SYR----KLSSLRNYLPDVPIL 197 (487)
Q Consensus 126 ~~~~~~~il~~tpe~v~t~~-~~~~l~~~~~-~~~l~~lViDEah~~~~~g~-~f~~-~~~----~l~~l~~~~~~~~~i 197 (487)
.......+ +..+.--.|.. ......+... .+.++++|||=.+.+...+. +-|. .+. .|+.+.+.+ ++|++
T Consensus 301 ~l~~~~~l-~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel-~ipVi 378 (472)
T PRK06904 301 MFKQKPNL-YIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKEL-KVPVV 378 (472)
T ss_pred HHhcCCCE-EEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHh-CCeEE
Confidence 11001112 22111112322 2222222222 23589999999998864332 1121 112 222222222 78888
Q ss_pred EEec
Q 011387 198 ALTA 201 (487)
Q Consensus 198 ~lSA 201 (487)
++|-
T Consensus 379 ~lsQ 382 (472)
T PRK06904 379 ALSQ 382 (472)
T ss_pred EEEe
Confidence 8874
No 298
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.12 E-value=0.27 Score=45.61 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=28.3
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhC--CCCcEEEEecCCChH---HHHHHHHHh
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPK---VQKDVMESL 215 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~--~~~~~i~lSAT~~~~---~~~~i~~~l 215 (487)
..++++||+.|.+.... ..-..+..+.+.+ .+.++++.|..++.. ...++...+
T Consensus 97 ~~DlL~iDDi~~l~~~~----~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl 155 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQ----RTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRL 155 (219)
T ss_dssp TSSEEEEETGGGGTTHH----HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHH
T ss_pred cCCEEEEecchhhcCch----HHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhH
Confidence 58899999999986521 1112233333222 255666666565543 234445544
No 299
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.08 E-value=0.57 Score=51.82 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=16.6
Q ss_pred CCEEEEcCCCchhhHHHHHhH
Q 011387 54 RDCFCLMPTGGGKSMCYQIPA 74 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~ 74 (487)
+.+++.+|+|+|||+..-.-+
T Consensus 488 ~giLL~GppGtGKT~lakalA 508 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVA 508 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 568999999999998754333
No 300
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.05 E-value=0.38 Score=49.14 Aligned_cols=16 Identities=25% Similarity=0.195 Sum_probs=13.7
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
.+++.||+|+|||...
T Consensus 138 ~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL 153 (405)
T ss_pred eEEEECCCCCcHHHHH
Confidence 5789999999999654
No 301
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.03 E-value=0.41 Score=50.28 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=25.2
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCC
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~ 204 (487)
.++.+++||||+|.+... ....|.+.....|..-.++|.+|-.
T Consensus 117 ~~~~kV~iIDE~~~ls~~------a~naLLk~LEepp~~~~fIlattd~ 159 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSGH------SFNALLKTLEEPPSHVKFILATTDH 159 (509)
T ss_pred cCCcEEEEEEChHhcCHH------HHHHHHHHHhccCCCeEEEEEECCh
Confidence 356789999999998752 2234444555555333344444543
No 302
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.02 E-value=0.41 Score=49.76 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=14.7
Q ss_pred CEEEEcCCCchhhHHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (487)
.+++.||+|+|||..+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999976643
No 303
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.01 E-value=0.087 Score=57.42 Aligned_cols=62 Identities=13% Similarity=0.158 Sum_probs=47.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHH--hH-hc----CCCeEEEeCcHHHHHHHHHHHHHHc
Q 011387 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI--PA-LA----KPGIVLVVSPLIALMENQVIGLKEK 101 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~l--p~-l~----~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (487)
.+++-|++++.. ...+++|.|+.|||||.+..- .- +. ....+++++.|+..+.+..+++.+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 478999999875 356899999999999976431 11 21 2457999999999999988888763
No 304
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.00 E-value=0.12 Score=49.29 Aligned_cols=140 Identities=21% Similarity=0.196 Sum_probs=70.2
Q ss_pred CEEEEcCCCchhhHHHHHh---HhcC-CCeEEEeCc---HHHHHHHHHHHHHHcCCceEEecCC-CCHHHHHHHHH---H
Q 011387 55 DCFCLMPTGGGKSMCYQIP---ALAK-PGIVLVVSP---LIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYE---D 123 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~lp---~l~~-~~~~lvl~P---~~~L~~q~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~---~ 123 (487)
=+++.|+||.|||...+-- +... +..+++++. ..+++......... +....+..+ ....+...... .
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~--v~~~~i~~g~l~~~e~~~~~~~~~~ 98 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSG--VPYNKIRSGDLSDEEFERLQAAAEK 98 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHT--STHHHHHCCGCHHHHHHHHHHHHHH
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhc--chhhhhhccccCHHHHHHHHHHHHH
Confidence 4567789999999755422 2233 578888885 34554444443332 322222222 22222222222 2
Q ss_pred HhcCCCcccEEE-eCcccccChh-hHHHHHhhhhc-CCccEEEEeccccccccC--CCChHHH----HHHHHHHHhCCCC
Q 011387 124 LDSGKPSLRLLY-VTPELTATPG-FMSKLKKIHSR-GLLNLVAIDEAHCISSWG--HDFRPSY----RKLSSLRNYLPDV 194 (487)
Q Consensus 124 ~~~~~~~~~il~-~tpe~v~t~~-~~~~l~~~~~~-~~l~~lViDEah~~~~~g--~~f~~~~----~~l~~l~~~~~~~ 194 (487)
+.. ..+.+ -+|. .|.. ....+...... ..+++||||=.|.+.... .+-+..+ ..|..+...+ ++
T Consensus 99 l~~----~~l~i~~~~~--~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~-~i 171 (259)
T PF03796_consen 99 LSD----LPLYIEDTPS--LTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKEL-NI 171 (259)
T ss_dssp HHT----SEEEEEESSS---BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHH-TS
T ss_pred Hhh----CcEEEECCCC--CCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHc-CC
Confidence 222 22332 2332 2333 22333333333 678999999999987642 1122222 2344333333 78
Q ss_pred cEEEEecCC
Q 011387 195 PILALTATA 203 (487)
Q Consensus 195 ~~i~lSAT~ 203 (487)
|++++|...
T Consensus 172 ~vi~~sQln 180 (259)
T PF03796_consen 172 PVIALSQLN 180 (259)
T ss_dssp EEEEEEEBS
T ss_pred eEEEccccC
Confidence 999888764
No 305
>PRK09183 transposase/IS protein; Provisional
Probab=93.96 E-value=0.66 Score=44.19 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=26.2
Q ss_pred HHcCCCEEEEcCCCchhhHHHHHh---HhcCCCeEEEeCcHHHHHHH
Q 011387 50 VLSGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMEN 93 (487)
Q Consensus 50 ~l~~~dvlv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~~L~~q 93 (487)
+..+.++++.+|+|+|||.....- +...+..+.++ +..+|..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~-~~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT-TAADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-eHHHHHHH
Confidence 346788999999999999644322 22334455544 34445443
No 306
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.89 E-value=0.38 Score=51.36 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=26.1
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChH
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (487)
+..+++||||+|.+...+ ...|.+.....|+.-.+++++|-...
T Consensus 117 gk~KV~IIDEVh~LS~~A------~NALLKtLEEPP~~v~FILaTtd~~k 160 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS------FNALLKTLEEPPEHVKFLFATTDPQK 160 (702)
T ss_pred CCcEEEEEechHhcCHHH------HHHHHHHHhcCCCCcEEEEEECChHh
Confidence 457899999999986522 23444455554443345555554443
No 307
>PRK08840 replicative DNA helicase; Provisional
Probab=93.83 E-value=0.81 Score=47.47 Aligned_cols=145 Identities=17% Similarity=0.168 Sum_probs=63.2
Q ss_pred CCEEEEcCCCchhhHHHHH----hHhcCCCeEEEeCcHHHHHHHHHHHHHHc--CCceEEe-cCCCCHHHHHHHHHHHhc
Q 011387 54 RDCFCLMPTGGGKSMCYQI----PALAKPGIVLVVSPLIALMENQVIGLKEK--GIAGEFL-SSTQTMQVKTKIYEDLDS 126 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l----p~l~~~~~~lvl~P~~~L~~q~~~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~ 126 (487)
.=+++.|.||.|||...+- .+...+..+++++.- .=..|.+.++-.. ++...-+ .+.....+...+......
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~ 296 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLE-MPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGI 296 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4456678999999975431 123346677777643 2223344443321 2222111 223333333332221111
Q ss_pred CCCcccEEEeCcccccCh-hhHHHHHhhhh-cCCccEEEEeccccccccCC-CChH-HHH----HHHHHHHhCCCCcEEE
Q 011387 127 GKPSLRLLYVTPELTATP-GFMSKLKKIHS-RGLLNLVAIDEAHCISSWGH-DFRP-SYR----KLSSLRNYLPDVPILA 198 (487)
Q Consensus 127 ~~~~~~il~~tpe~v~t~-~~~~~l~~~~~-~~~l~~lViDEah~~~~~g~-~f~~-~~~----~l~~l~~~~~~~~~i~ 198 (487)
-.....+. ..+.--.|. .......+... .+.+++||||=.|.+...+. +-|. .+. .|+.+.+.+ ++|+++
T Consensus 297 l~~~~~l~-I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel-~ipVi~ 374 (464)
T PRK08840 297 LMEKKNMY-IDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKEL-NVPVVA 374 (464)
T ss_pred HHhcCCEE-EECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHh-CCeEEE
Confidence 00001222 211111222 22222222222 23589999999998854332 1121 111 222222222 788888
Q ss_pred Eec
Q 011387 199 LTA 201 (487)
Q Consensus 199 lSA 201 (487)
+|-
T Consensus 375 LsQ 377 (464)
T PRK08840 375 LSQ 377 (464)
T ss_pred EEe
Confidence 873
No 308
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.79 E-value=0.82 Score=48.70 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=29.1
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHH
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 210 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~ 210 (487)
.+..+++||||+|.+..- ....|.+.....|..-+++|..|-...+...
T Consensus 116 ~~~~KVvIIDEah~Lt~~------A~NALLK~LEEpp~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA------GFNALLKIVEEPPEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred cCCceEEEEECCCcCCHH------HHHHHHHHHhcCCCCeEEEEEeCChHhhHHH
Confidence 356789999999999752 2344555555555444444444654444333
No 309
>CHL00181 cbbX CbbX; Provisional
Probab=93.76 E-value=0.96 Score=43.81 Aligned_cols=18 Identities=17% Similarity=0.036 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
.++++.+|+|+|||.++.
T Consensus 60 ~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999998764
No 310
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.75 E-value=0.57 Score=51.56 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
..++++.+|+|+|||....
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999998753
No 311
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.70 E-value=0.79 Score=46.52 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=16.8
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~l 72 (487)
.+.+++.+|+|+|||+..-.
T Consensus 179 pkgvLL~GppGTGKT~LAka 198 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKA 198 (398)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 47899999999999987543
No 312
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=1.5 Score=43.53 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=37.5
Q ss_pred CcccccCCCCChhHHHHHHHHHHc-------------CCCCCcH-HHHHHH-----HHHHcC-----CCEEEEcCCCchh
Q 011387 11 TSQTQKNKPLHEKEALVKLLRWHF-------------GHAQFRD-KQLDAI-----QAVLSG-----RDCFCLMPTGGGK 66 (487)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~f-------------g~~~~~~-~Q~~~i-----~~~l~~-----~dvlv~apTGsGK 66 (487)
......|...+...++.+.|+.-. |...-.. .++.++ |.+.+| |.+++++|+|+||
T Consensus 179 ~~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGK 258 (491)
T KOG0738|consen 179 KGEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGK 258 (491)
T ss_pred ccccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcH
Confidence 345667788888888888887532 1111111 222222 333445 6899999999999
Q ss_pred hHHH
Q 011387 67 SMCY 70 (487)
Q Consensus 67 Tl~~ 70 (487)
|+.+
T Consensus 259 TlLA 262 (491)
T KOG0738|consen 259 TLLA 262 (491)
T ss_pred HHHH
Confidence 9865
No 313
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.69 E-value=0.54 Score=50.11 Aligned_cols=47 Identities=23% Similarity=0.325 Sum_probs=26.4
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHH
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~ 208 (487)
.+...++||||+|.+.. .....|.+.....+...++++.+|-...+.
T Consensus 117 ~g~~kVIIIDEad~Lt~------~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTR------EAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCceEEEEEChHhCCH------HHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 34568999999999853 222334444444334445556555444433
No 314
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.69 E-value=0.55 Score=48.44 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
+.+++.||+|+|||...
T Consensus 131 n~l~lyG~~G~GKTHLl 147 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_pred CeEEEEcCCCCcHHHHH
Confidence 36899999999999754
No 315
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=93.69 E-value=0.078 Score=57.00 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=48.5
Q ss_pred CCEEEEcCCCchhhHHHHHhHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCC
Q 011387 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQ 112 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~ 112 (487)
.++++.||||+|||..+.+|.+.. ++.+||+=|--++..-+....++.|-++..+....
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfdP~~ 284 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLDPTN 284 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999866 77888888999998887777777776666655433
No 316
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.65 E-value=2.6 Score=41.43 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=31.2
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHH-------hCCCCcEEEEecCCChHHHHHHHHH
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-------YLPDVPILALTATAAPKVQKDVMES 214 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~-------~~~~~~~i~lSAT~~~~~~~~i~~~ 214 (487)
...++++||=+-+... -...+.+|..+.+ ..|.-.++.++||...+.......+
T Consensus 195 ~~~D~ViIDTaGr~~~----~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHN----KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcC----CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 4578999999987542 1122233333332 1234457899999876655544443
No 317
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.61 E-value=0.2 Score=56.24 Aligned_cols=76 Identities=11% Similarity=0.092 Sum_probs=64.6
Q ss_pred CCceEEEEecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc-ccccccCCCcEEE
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMGIDRKDVRLVC 331 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~-~~GiDip~v~~VI 331 (487)
.+.+++|.++|+.-|++.++.+++ .++.+..++++.+..++.++++.+.+|+.+|+|+|..+ ...+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 456899999999999999988776 36778899999999999999999999999999999854 4557788888877
Q ss_pred E
Q 011387 332 H 332 (487)
Q Consensus 332 ~ 332 (487)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 3
No 318
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.60 E-value=0.71 Score=49.63 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=26.7
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChH
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (487)
.+..+++||||+|.+.... ...|-+.....|+.-++++..|-...
T Consensus 117 ~g~~KV~IIDEah~Ls~~a------~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHS------FNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred cCCCEEEEEechHhCCHHH------HHHHHHHHHcCCCCeEEEEecCCccc
Confidence 4568899999999987522 23444455555543344444554433
No 319
>PHA02533 17 large terminase protein; Provisional
Probab=93.59 E-value=1.9 Score=45.62 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=48.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhH-----hcCCCeEEEeCcHHHHHHHHHHHHHH
Q 011387 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA-----LAKPGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~-----l~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
.|+|+|++.+..+..++-.++..+=..|||.+....+ ...+..+++++|+..-+...++.++.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4788999999887666666788888899997654322 23466899999999888887777664
No 320
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.58 E-value=0.87 Score=47.12 Aligned_cols=44 Identities=18% Similarity=0.050 Sum_probs=24.9
Q ss_pred CCEEEEcCCCchhhHHHH-HhH-h---cCCCeEEEeCcHHHHHHHHHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ-IPA-L---AKPGIVLVVSPLIALMENQVIGL 98 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lp~-l---~~~~~~lvl~P~~~L~~q~~~~l 98 (487)
+.+++.|++|+|||.... +.. + ..+.+++++.+ .++..+....+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 458899999999995322 111 1 12345555444 55655544443
No 321
>PRK05748 replicative DNA helicase; Provisional
Probab=93.57 E-value=0.35 Score=50.13 Aligned_cols=146 Identities=20% Similarity=0.177 Sum_probs=63.8
Q ss_pred CCEEEEcCCCchhhHHHHHh----HhcCCCeEEEeCcHHHHHHHHHHHHHH-c-CCceE-EecCCCCHHHHHHHHHHHhc
Q 011387 54 RDCFCLMPTGGGKSMCYQIP----ALAKPGIVLVVSPLIALMENQVIGLKE-K-GIAGE-FLSSTQTMQVKTKIYEDLDS 126 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp----~l~~~~~~lvl~P~~~L~~q~~~~l~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~ 126 (487)
.-+++.|+||.|||...+-- +...+..+++++.- .-..|...++.. . ++... ...+.....+..........
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlE-ms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~~~ 282 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLE-MGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAMGS 282 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCC-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHH
Confidence 44677889999999654322 22336667777632 222233333321 1 22211 11122222222222111111
Q ss_pred CCCcccEEEe-CcccccChhhHHHHHhhhhc-CCccEEEEeccccccccCC--CChH-HH----HHHHHHHHhCCCCcEE
Q 011387 127 GKPSLRLLYV-TPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH--DFRP-SY----RKLSSLRNYLPDVPIL 197 (487)
Q Consensus 127 ~~~~~~il~~-tpe~v~t~~~~~~l~~~~~~-~~l~~lViDEah~~~~~g~--~f~~-~~----~~l~~l~~~~~~~~~i 197 (487)
.. ...+.+. +|. +........+.+.... +.++++|||=.+.+...+. +-|. .+ +.|+.+.+.+ ++|++
T Consensus 283 l~-~~~~~i~d~~~-~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~-~i~vi 359 (448)
T PRK05748 283 LS-DAPIYIDDTPG-IKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKEL-KVPVI 359 (448)
T ss_pred Hh-cCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHh-CCeEE
Confidence 11 1223222 221 2112233333333333 2689999999998853322 1121 11 1222222222 78888
Q ss_pred EEecCC
Q 011387 198 ALTATA 203 (487)
Q Consensus 198 ~lSAT~ 203 (487)
++|-..
T Consensus 360 ~lsQln 365 (448)
T PRK05748 360 ALSQLS 365 (448)
T ss_pred EecccC
Confidence 887754
No 322
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.54 E-value=1.4 Score=43.60 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=14.8
Q ss_pred CEEEEcCCCchhhHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (487)
.+++.+|+|+|||....
T Consensus 38 ~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVR 54 (337)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999997653
No 323
>PRK08760 replicative DNA helicase; Provisional
Probab=93.50 E-value=0.27 Score=51.25 Aligned_cols=145 Identities=19% Similarity=0.145 Sum_probs=65.3
Q ss_pred CEEEEcCCCchhhHHHHHhH----hcCCCeEEEeCcHHHHHHHHHHHHHHcC--CceEEec-CCCCHHHHHHHHHHHhcC
Q 011387 55 DCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKEKG--IAGEFLS-STQTMQVKTKIYEDLDSG 127 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~lp~----l~~~~~~lvl~P~~~L~~q~~~~l~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~ 127 (487)
=+++.|.||.|||...+--+ ...+..+++++.-- -..|...++.... +....+. +.....+..........-
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEM-s~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~~~l 309 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEM-SASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKML 309 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccC-CHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 35677899999997554222 23356677776422 2234444544321 2211111 222232222221111111
Q ss_pred CCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCC-CCh-----HHHHHHHHHHHhCCCCcEEEEec
Q 011387 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFR-----PSYRKLSSLRNYLPDVPILALTA 201 (487)
Q Consensus 128 ~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~-~f~-----~~~~~l~~l~~~~~~~~~i~lSA 201 (487)
. ...+.+....-+.-........+......+++||||=.+.+...+. +-| ...+.|+.+.+.+ ++|++++|-
T Consensus 310 ~-~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel-~ipVi~lsQ 387 (476)
T PRK08760 310 K-ETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKEL-NVPVIALSQ 387 (476)
T ss_pred h-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHh-CCEEEEeec
Confidence 0 1233322211122122223333333445689999999998853322 111 1123333333333 788888874
Q ss_pred C
Q 011387 202 T 202 (487)
Q Consensus 202 T 202 (487)
.
T Consensus 388 L 388 (476)
T PRK08760 388 L 388 (476)
T ss_pred c
Confidence 3
No 324
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.44 E-value=0.11 Score=57.33 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=48.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH--HhH-hc----CCCeEEEeCcHHHHHHHHHHHHHHc
Q 011387 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKEK 101 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~--lp~-l~----~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (487)
+.|++-|++++.. ...+++|.|..|||||.+.. +.- +. ....+++|+.|+..+.+..+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999865 35689999999999997643 221 22 2457999999999999988888764
No 325
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.39 E-value=0.24 Score=48.36 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchhhHH
Q 011387 53 GRDCFCLMPTGGGKSMC 69 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~ 69 (487)
++.+++.||+|+|||..
T Consensus 156 ~~gl~L~G~~G~GKThL 172 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL 172 (306)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45799999999999954
No 326
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.32 E-value=0.99 Score=45.82 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
+.+++.+|+|+|||+..-
T Consensus 166 ~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CceEEECCCCCChHHHHH
Confidence 579999999999998653
No 327
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.31 E-value=0.45 Score=52.59 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
++.+++.+|+|+|||....
T Consensus 212 ~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CceEEEECCCCCChHHHHH
Confidence 4789999999999997643
No 328
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.31 E-value=0.63 Score=51.41 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
.++++.+|+|+|||...
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999865
No 329
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.30 E-value=0.13 Score=57.61 Aligned_cols=148 Identities=15% Similarity=0.117 Sum_probs=86.8
Q ss_pred CCCEEEEcCCCchhhHHHHHhHhc---------------------CCCeEEEeCcHHHHHHHHHHHHHH---cCCceEEe
Q 011387 53 GRDCFCLMPTGGGKSMCYQIPALA---------------------KPGIVLVVSPLIALMENQVIGLKE---KGIAGEFL 108 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~lp~l~---------------------~~~~~lvl~P~~~L~~q~~~~l~~---~~~~~~~~ 108 (487)
|++++..-..|.|||.+-+...+. ..|.+|||+|. ++..||..++.. .++++..+
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEE
Confidence 567788889999999875433221 15679999997 667888988876 23344333
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChh---------hHHHHHhh-hh-cCCc-----cEEEEeccccccc
Q 011387 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG---------FMSKLKKI-HS-RGLL-----NLVAIDEAHCISS 172 (487)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~---------~~~~l~~~-~~-~~~l-----~~lViDEah~~~~ 172 (487)
-+-....-... ..-.+++|+++|..++.+.- +-.++.+. .. ...| =.|++|||+.+-.
T Consensus 453 ~Girk~~~~~~------~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves 526 (1394)
T KOG0298|consen 453 FGIRKTFWLSP------FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES 526 (1394)
T ss_pred echhhhcccCc------hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc
Confidence 22111100000 11124788888877664321 11111110 00 1111 1399999998754
Q ss_pred cCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHh
Q 011387 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 215 (487)
Q Consensus 173 ~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l 215 (487)
- -....+....++....=++|+||-.. ..++.-.+
T Consensus 527 s-------sS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll 561 (1394)
T KOG0298|consen 527 S-------SSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLL 561 (1394)
T ss_pred h-------HHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHH
Confidence 1 25666677778888889999999877 55554433
No 330
>PRK05595 replicative DNA helicase; Provisional
Probab=93.29 E-value=0.37 Score=49.90 Aligned_cols=145 Identities=15% Similarity=0.114 Sum_probs=65.7
Q ss_pred CEEEEcCCCchhhHHHH-Hh---HhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceEEec-CCCCHHHHHHHHHHHhcC
Q 011387 55 DCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQTMQVKTKIYEDLDSG 127 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp---~l~~~~~~lvl~P~~~L~~q~~~~l~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 127 (487)
=+++.|.||.|||...+ +. +...+..+++++.-- -..|...++.. .++....+. +.....+..........-
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEm-s~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~~~~l 281 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEM-SKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARASGPL 281 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCC-CHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 35668899999997544 22 234467788877531 12333333322 233322222 222232222222221110
Q ss_pred CCcccEEEeCcccccCh-hhHHHHHhhhhcCCccEEEEeccccccccC-CCChH-HH----HHHHHHHHhCCCCcEEEEe
Q 011387 128 KPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWG-HDFRP-SY----RKLSSLRNYLPDVPILALT 200 (487)
Q Consensus 128 ~~~~~il~~tpe~v~t~-~~~~~l~~~~~~~~l~~lViDEah~~~~~g-~~f~~-~~----~~l~~l~~~~~~~~~i~lS 200 (487)
....+.+--+.- .|. .....+.+......++++|||=.|.+...+ .+-|. .+ +.|+.+.+.+ ++|++++|
T Consensus 282 -~~~~l~i~d~~~-~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~-~i~vi~ls 358 (444)
T PRK05595 282 -AAAKIFIDDTAG-VSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEM-ECPVIALS 358 (444)
T ss_pred -hcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHh-CCeEEEee
Confidence 012232221111 222 222333333333459999999999986432 12121 11 2233333322 78888887
Q ss_pred cCC
Q 011387 201 ATA 203 (487)
Q Consensus 201 AT~ 203 (487)
-..
T Consensus 359 QLn 361 (444)
T PRK05595 359 QLS 361 (444)
T ss_pred ccC
Confidence 553
No 331
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=93.24 E-value=0.12 Score=55.33 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=46.6
Q ss_pred CCEEEEcCCCchhhHHHHHhHhcC-CCeEEEeCcHHHHHHHHHHHHHHcC-CceEEecC
Q 011387 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKG-IAGEFLSS 110 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~~-~~~~~~~~ 110 (487)
.++++.||||+|||..+.+|.+.. ++.+||+=|--++..-+...-++.| -++..+..
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vfdP 270 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVLDP 270 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 589999999999999999998776 7889999999999887776666666 55555544
No 332
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.24 E-value=0.37 Score=44.84 Aligned_cols=100 Identities=26% Similarity=0.253 Sum_probs=54.2
Q ss_pred CCCEEEEcCCCchhhHHH---HHhHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCC
Q 011387 53 GRDCFCLMPTGGGKSMCY---QIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~---~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (487)
|.-+++.+|+|+|||.-. +...+.. +.++++++- .+-..+..+.+.++|.... .-...+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~---------------~~~~~g- 81 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKSFGWDLE---------------EYEDSG- 81 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHTTTS-HH---------------HHHHTT-
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHHcCCcHH---------------HHhhcC-
Confidence 457889999999999643 2345566 788888873 2233555555666554211 111111
Q ss_pred CcccEEEeCccccc----C-hhhHHHHHhhhhcCCccEEEEeccccc
Q 011387 129 PSLRLLYVTPELTA----T-PGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (487)
Q Consensus 129 ~~~~il~~tpe~v~----t-~~~~~~l~~~~~~~~l~~lViDEah~~ 170 (487)
.+.++-..++... . ..+...+.+.......+++|||-...+
T Consensus 82 -~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 82 -KLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp -SEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred -CEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1444444444331 2 223344444444444589999999888
No 333
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.23 E-value=0.63 Score=49.16 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=14.7
Q ss_pred CEEEEcCCCchhhHHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (487)
-.++.||.|+|||.++.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 358999999999987643
No 334
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.23 E-value=0.2 Score=43.21 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=24.9
Q ss_pred EEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHH
Q 011387 57 FCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (487)
Q Consensus 57 lv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q 93 (487)
++.+|.|+|||.+|........+ .++++..-+++.|
T Consensus 6 IvaG~NGsGKstv~~~~~~~~~~-~~~~VN~D~iA~~ 41 (187)
T COG4185 6 IVAGPNGSGKSTVYASTLAPLLP-GIVFVNADEIAAQ 41 (187)
T ss_pred EEecCCCCCceeeeeccchhhcC-CeEEECHHHHhhh
Confidence 67789999999887543333333 5667777777776
No 335
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.19 E-value=0.13 Score=56.78 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=48.9
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH--HhH-hc----CCCeEEEeCcHHHHHHHHHHHHHHc
Q 011387 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKEK 101 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~--lp~-l~----~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (487)
..+++-|++++.. ...+++|.|..|||||.+.. +.- +. ....+++|+.|+..+.+..+++.++
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 4699999999875 34689999999999997643 221 21 2467999999999999998888774
No 336
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.17 E-value=0.49 Score=42.52 Aligned_cols=134 Identities=18% Similarity=0.139 Sum_probs=70.0
Q ss_pred cCCCEEEEcCCCchhhHHHHH---hHhcCCCeEEEeCcHHHHH-HHHHHHHHHc-CCceEEecCCCCH--HHHHHHHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALM-ENQVIGLKEK-GIAGEFLSSTQTM--QVKTKIYEDL 124 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~l---p~l~~~~~~lvl~P~~~L~-~q~~~~l~~~-~~~~~~~~~~~~~--~~~~~~~~~~ 124 (487)
....+.+..++|-|||.+++- -++..+.+++++--.+.-. ..-...++.+ ++.......+..- ......
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~---- 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERD---- 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHH----
Confidence 456889999999999988763 3445577777776544321 1111222221 1111111100000 000000
Q ss_pred hcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCC
Q 011387 125 DSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (487)
Q Consensus 125 ~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~ 204 (487)
...-..-+....+....+..+++|+||.=...++| +-+. ..+..+....|.-.-+.+|+-..
T Consensus 97 ---------------~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~g--li~~-eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 97 ---------------IAAAREGWEEAKRMLADESYDLVVLDELTYALKYG--YLDV-EEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred ---------------HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCC--CccH-HHHHHHHHcCCCCCEEEEECCCC
Confidence 00001122333445556789999999999998888 4333 33444555566555677777765
Q ss_pred hHH
Q 011387 205 PKV 207 (487)
Q Consensus 205 ~~~ 207 (487)
+..
T Consensus 159 p~~ 161 (191)
T PRK05986 159 PRE 161 (191)
T ss_pred CHH
Confidence 543
No 337
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.16 E-value=2.5 Score=39.44 Aligned_cols=102 Identities=16% Similarity=0.062 Sum_probs=54.1
Q ss_pred CCCEEEEcCCCchhhHHHH-H--hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCC
Q 011387 53 GRDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~-l--p~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (487)
|.-+++.+++|+|||.... + -.+..+.++++++--. -..+..+.+.++|+...- .+..+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~-~~~~~~~~~~~~g~~~~~---------------~~~~g~- 87 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN-TSKSYLKQMESVKIDISD---------------FFLWGY- 87 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC-CHHHHHHHHHHCCCChhH---------------HHhCCC-
Confidence 3567889999999996433 2 2345577777777432 234555666666543210 000111
Q ss_pred cccEEEeCcccccC-----hhhHHHHHhhhhcCCccEEEEeccccccc
Q 011387 130 SLRLLYVTPELTAT-----PGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (487)
Q Consensus 130 ~~~il~~tpe~v~t-----~~~~~~l~~~~~~~~l~~lViDEah~~~~ 172 (487)
..++-..++.+.. ...+..+.........+++||||.-.+..
T Consensus 88 -l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 88 -LRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred -ceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 2222222221111 22344444444445678999999996543
No 338
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.15 E-value=0.52 Score=41.13 Aligned_cols=53 Identities=28% Similarity=0.352 Sum_probs=33.1
Q ss_pred HhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChH
Q 011387 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (487)
Q Consensus 151 ~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (487)
.+....+..+++|+||+=....+|. -+. ..+..+.+..|...-+.+|+--.+.
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gl--i~~-~~v~~ll~~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGL--LDV-EEVVDLLKAKPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCC--CCH-HHHHHHHHcCCCCCEEEEECCCCCH
Confidence 4444567799999999999888773 222 3444455555554455555554443
No 339
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.15 E-value=0.41 Score=42.34 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=34.9
Q ss_pred HhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChH
Q 011387 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (487)
Q Consensus 151 ~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (487)
.+....+..+++|+||+=...++| +-+. ..+..+.+..|.--=+.+|+...+.
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~g--li~~-~~v~~lL~~rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYG--YLDV-EEVVEALQERPGHQHVIITGRGCPQ 142 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCC--CcCH-HHHHHHHHhCCCCCEEEEECCCCCH
Confidence 444456779999999999988887 3333 3444455656655566777765554
No 340
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.13 E-value=0.27 Score=53.30 Aligned_cols=73 Identities=21% Similarity=0.179 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhC--CCceEEEEecccchHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 011387 245 AYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (487)
Q Consensus 245 ~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~ 317 (487)
|.+...+.+... .++.+||.++.+....++.+.++.. |.++..+|+++++.+|.+.-.+..+|+.+|+|.|-.
T Consensus 230 KTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS 305 (730)
T COG1198 230 KTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS 305 (730)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEech
Confidence 334444444332 5678999999999999988888764 889999999999999999999999999999999964
No 341
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.13 E-value=0.66 Score=50.31 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=25.7
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCCh
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~ 205 (487)
.+..+++||||||.+.. .....|.......|..-++++.+|-..
T Consensus 116 ~g~~KV~IIDEa~~LT~------~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK------SAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred cCCCEEEEEEChhhCCH------HHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 35678999999999864 123344444455444434455555433
No 342
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=1.2 Score=46.80 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=26.7
Q ss_pred CCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q 93 (487)
+-+++.+|+|+|||+.+...+...+...+-+... +|...
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk 315 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSK 315 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhcc
Confidence 4689999999999998766666555544444433 55443
No 343
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.02 E-value=3.8 Score=39.28 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=30.3
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHh-------CCCCcEEEEecCCChHHHHHHHH
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-------LPDVPILALTATAAPKVQKDVME 213 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~-------~~~~~~i~lSAT~~~~~~~~i~~ 213 (487)
...++++||=+-.... -.....+|..+.+. .|.-.++.++||...+.......
T Consensus 153 ~~~D~ViIDT~G~~~~----d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~ 212 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN----KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKV 212 (272)
T ss_pred CCCCEEEEeCCCCCcc----hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHH
Confidence 4578899998877542 11222334444332 24555789999877665554433
No 344
>PRK08006 replicative DNA helicase; Provisional
Probab=93.01 E-value=1.3 Score=46.08 Aligned_cols=145 Identities=19% Similarity=0.179 Sum_probs=63.8
Q ss_pred CEEEEcCCCchhhHHHHHh----HhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceEEe-cCCCCHHHHHHHHHHHhcC
Q 011387 55 DCFCLMPTGGGKSMCYQIP----ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL-SSTQTMQVKTKIYEDLDSG 127 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~lp----~l~~~~~~lvl~P~~~L~~q~~~~l~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 127 (487)
=+++.|.||.|||...+-- +...+..+++++.- .=..|.+.++-. .++....+ .+..+..+...+......-
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~~~ 304 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLE-MPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGIL 304 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 3566779999999754421 22345677777642 222333334332 12222112 2233333333322221111
Q ss_pred CCcccEEEeCcccccChh-hHHHHHhhhh-cCCccEEEEeccccccccCC-CChH-HH----HHHHHHHHhCCCCcEEEE
Q 011387 128 KPSLRLLYVTPELTATPG-FMSKLKKIHS-RGLLNLVAIDEAHCISSWGH-DFRP-SY----RKLSSLRNYLPDVPILAL 199 (487)
Q Consensus 128 ~~~~~il~~tpe~v~t~~-~~~~l~~~~~-~~~l~~lViDEah~~~~~g~-~f~~-~~----~~l~~l~~~~~~~~~i~l 199 (487)
.....+ +..+.--.|.. ......+... .+.++++|||=.|.+...+. +-|. .+ +.|+.+.+.+ ++|++++
T Consensus 305 ~~~~~l-~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel-~ipVi~L 382 (471)
T PRK08006 305 LEKRNM-YIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKEL-QVPVVAL 382 (471)
T ss_pred HhcCCE-EEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHh-CCeEEEE
Confidence 001222 22221112222 2222223222 23689999999998853221 1121 12 2233333322 7888888
Q ss_pred ecC
Q 011387 200 TAT 202 (487)
Q Consensus 200 SAT 202 (487)
|-.
T Consensus 383 sQL 385 (471)
T PRK08006 383 SQL 385 (471)
T ss_pred Eec
Confidence 743
No 345
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.92 E-value=1.1 Score=47.67 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=27.1
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHH
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (487)
..+++||||||.+..- ....|.......|...++++.+|....+
T Consensus 119 ~~KVIIIDEad~Lt~~------A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 119 KYKVYIIDEAHMLSTS------AWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred CcEEEEEechHhCCHH------HHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 4678999999998542 2345555556555555555655544333
No 346
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.92 E-value=0.71 Score=41.56 Aligned_cols=138 Identities=17% Similarity=0.145 Sum_probs=55.4
Q ss_pred cCCCEEEEcCCCchhhHHHH-H-hHh-c----------CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ-I-PAL-A----------KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKT 118 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~-l-p~l-~----------~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~ 118 (487)
.|.-+++.||+|+|||...+ + ..+ . .+.+++++..-.. ..+..+++....... ......
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~~~-------~~~~~~ 102 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQDY-------DDDANL 102 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHTTS--------HHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhccc-------CCccce
Confidence 35567899999999996543 1 112 1 3567888875444 344455555432111 111111
Q ss_pred HHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhc-CCccEEEEeccccccccCCCChHHH----HHHHHHHHhCCC
Q 011387 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSY----RKLSSLRNYLPD 193 (487)
Q Consensus 119 ~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~-~~l~~lViDEah~~~~~g~~f~~~~----~~l~~l~~~~~~ 193 (487)
.... .... ....+..........+..+..+.+.... ..++++|||=...+..-+.+....+ ..+..+...+ +
T Consensus 103 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~-~ 179 (193)
T PF13481_consen 103 FFVD-LSNW-GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEY-G 179 (193)
T ss_dssp HHHH-H--E--EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--
T ss_pred EEee-cccc-ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHc-C
Confidence 1111 1110 0111111000011123344455555444 5699999999998876444333332 3333333332 4
Q ss_pred CcEEEEe
Q 011387 194 VPILALT 200 (487)
Q Consensus 194 ~~~i~lS 200 (487)
+.++++.
T Consensus 180 ~~vi~v~ 186 (193)
T PF13481_consen 180 VAVILVH 186 (193)
T ss_dssp -EEEEEE
T ss_pred CEEEEEE
Confidence 5555544
No 347
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=92.92 E-value=0.098 Score=56.37 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=45.1
Q ss_pred CCEEEEcCCCchhhHHHHHhHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceEEec
Q 011387 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~ 109 (487)
.++++.||||||||..+.+|.|.. .+.+||+=|--++...+....++.| ++..++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~~Ta~~R~~~G-~V~~Fd 200 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRARFG-RVLLFD 200 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHHHHHHHHHhCC-eEEEEe
Confidence 689999999999999999998876 7789999999999888777766666 444443
No 348
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.89 E-value=3.3 Score=42.56 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=28.7
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHh-CCCCcEEEEecCCChHHHHH
Q 011387 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKD 210 (487)
Q Consensus 159 l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~ 210 (487)
.+++|||.+-+... -.....++..+... .|+.-++.+.||...+....
T Consensus 176 ~DvVIIDTAGr~~~----d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~ 224 (437)
T PRK00771 176 ADVIIVDTAGRHAL----EEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQ 224 (437)
T ss_pred CCEEEEECCCcccc----hHHHHHHHHHHHHHhcccceeEEEeccccHHHHHH
Confidence 38899999966432 12233445555443 35666788888887654443
No 349
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.89 E-value=0.78 Score=43.73 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=23.6
Q ss_pred CCCEEEEcCCCchhhHHHH-H--hHhcCCCeEEEeC
Q 011387 53 GRDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVS 85 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~-l--p~l~~~~~~lvl~ 85 (487)
|.-++|.+++|+|||...+ + -.+..+.++++++
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4567899999999996433 2 2234577888888
No 350
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.88 E-value=2.7 Score=42.80 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=33.5
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHhc
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~ 216 (487)
....+.++||.+-+. +.-......+..+.... +...++.++||.......++...+.
T Consensus 267 l~~~d~VLIDTaGrs----qrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~ 324 (420)
T PRK14721 267 LRGKHMVLIDTVGMS----QRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ 324 (420)
T ss_pred hcCCCEEEecCCCCC----cchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc
Confidence 345678999986322 11122234455443322 2345788999998887777776554
No 351
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.85 E-value=0.29 Score=46.31 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=25.3
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcC----CCEEEEcCCCchhhHHH
Q 011387 28 KLLRWHFGHAQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~~l~~----~dvlv~apTGsGKTl~~ 70 (487)
+.|.++.|-.+.+.-=+-.|.+.... .++++.+|+|.|||..+
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA 69 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLA 69 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHH
Confidence 34444445444443333344444332 47999999999999754
No 352
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.84 E-value=1.6 Score=46.78 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=25.7
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCCh
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~ 205 (487)
.+..+++||||+|.+... ....|.+.....|..-+++|.+|-..
T Consensus 130 ~a~~KVvIIDEad~Ls~~------a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA------AFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred cCCcEEEEEEChHhCCHH------HHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 455789999999998642 23444444555544334444445433
No 353
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.78 E-value=0.64 Score=49.79 Aligned_cols=46 Identities=22% Similarity=0.355 Sum_probs=26.4
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHH
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (487)
.+..+++||||+|.++... +..|.+.....|+.-+++|.+|-...+
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a------~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTA------FNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred cCCceEEEEEChhhCCHHH------HHHHHHhcccCCCCeEEEEEECCchhh
Confidence 3457899999999987522 233333444444443455555554443
No 354
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.73 E-value=2.6 Score=42.21 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=28.9
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHH
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVME 213 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~ 213 (487)
+..++|+||=+-+.-. -......+..+.... |..-++.+|||........+..
T Consensus 284 ~~~D~VLIDTAGr~~~----d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~ 337 (407)
T PRK12726 284 NCVDHILIDTVGRNYL----AEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILP 337 (407)
T ss_pred CCCCEEEEECCCCCcc----CHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHH
Confidence 4578899998876421 233334455444433 2333566777766554444444
No 355
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.73 E-value=0.81 Score=44.25 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
.++++.+|+|+|||.++
T Consensus 59 ~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVA 75 (284)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47999999999999876
No 356
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.70 E-value=0.34 Score=55.74 Aligned_cols=76 Identities=9% Similarity=0.096 Sum_probs=63.5
Q ss_pred CCceEEEEecccchHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-cccccccCCCcEEE
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~-~~~GiDip~v~~VI 331 (487)
.+.+++|.++|+.-+.++++.+++. ++.+..++++.+.+++.++++...+|..+|+|+|.. +...++..++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4678999999999999999888753 467888999999999999999999999999999975 34456677888877
Q ss_pred E
Q 011387 332 H 332 (487)
Q Consensus 332 ~ 332 (487)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 3
No 357
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.57 E-value=6.9 Score=34.44 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=26.2
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHh-CCCCcEEEEecCCChHHHH
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQK 209 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~ 209 (487)
...+++|+|....... -......+..+... .+...++.+.|+...+..+
T Consensus 81 ~~~d~viiDt~g~~~~----~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~ 130 (173)
T cd03115 81 ENFDVVIVDTAGRLQI----DENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVN 130 (173)
T ss_pred CCCCEEEEECcccchh----hHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHH
Confidence 4577899999886531 01222334333332 2455566777765554444
No 358
>PHA02542 41 41 helicase; Provisional
Probab=92.53 E-value=1.5 Score=45.67 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=25.9
Q ss_pred HHHHHHHH-cC---CC-EEEEcCCCchhhHHHHHh---HhcCCCeEEEeC
Q 011387 44 LDAIQAVL-SG---RD-CFCLMPTGGGKSMCYQIP---ALAKPGIVLVVS 85 (487)
Q Consensus 44 ~~~i~~~l-~~---~d-vlv~apTGsGKTl~~~lp---~l~~~~~~lvl~ 85 (487)
-..++.++ .| .+ +++.|++|.|||...+-- +...+..+++++
T Consensus 176 ~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fS 225 (473)
T PHA02542 176 LEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYIS 225 (473)
T ss_pred cHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 34455555 33 23 567789999999765422 223466777776
No 359
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.46 E-value=0.21 Score=54.60 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=46.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHH--h-Hhc----CCCeEEEeCcHHHHHHHHHHHHHH
Q 011387 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI--P-ALA----KPGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~l--p-~l~----~~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
.|++-|++++.. ...+++|.|+.|||||.+..- . .+. ....+++|+.|+..+.+..+++.+
T Consensus 1 ~Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~ 68 (664)
T TIGR01074 1 KLNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAK 68 (664)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 378899999875 356899999999999976432 1 121 245789999999999988888765
No 360
>PRK09165 replicative DNA helicase; Provisional
Probab=92.39 E-value=0.54 Score=49.31 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=27.9
Q ss_pred HhhhhcCCccEEEEeccccccccCC---CChH-HH----HHHHHHHHhCCCCcEEEEecC
Q 011387 151 KKIHSRGLLNLVAIDEAHCISSWGH---DFRP-SY----RKLSSLRNYLPDVPILALTAT 202 (487)
Q Consensus 151 ~~~~~~~~l~~lViDEah~~~~~g~---~f~~-~~----~~l~~l~~~~~~~~~i~lSAT 202 (487)
.+......+++||||=.|.+...+. +-|. .+ +.|..+.+.+ ++|++++|-.
T Consensus 334 r~l~~~~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is~~LK~lAkel-~ipVi~lsQL 392 (497)
T PRK09165 334 RRLKRQHGLDLLVVDYLQLIRGSSKRSSDNRVQEISEITQGLKALAKEL-NIPVIALSQL 392 (497)
T ss_pred HHHHHhcCCCEEEEcchHhccCCCCCCCCchHHHHHHHHHHHHHHHHHh-CCeEEEeecc
Confidence 3333345689999999998864321 1121 12 2233332322 7787777653
No 361
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.37 E-value=0.34 Score=47.57 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=34.0
Q ss_pred CCcHHHHHHHHHHH-cCCCEEEEcCCCchhhHHH--HHhHh---cCCCeEEEeCcHHHH
Q 011387 38 QFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCY--QIPAL---AKPGIVLVVSPLIAL 90 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l-~~~dvlv~apTGsGKTl~~--~lp~l---~~~~~~lvl~P~~~L 90 (487)
.+++.|.+.+..+. .++++++.++||||||... ++..+ ..+.+++++=...+|
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 47788888776654 5679999999999999642 22222 123455555444444
No 362
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.35 E-value=1.1 Score=44.12 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=23.1
Q ss_pred CcHHHHHHHHHHH----cC---CCEEEEcCCCchhhHHH
Q 011387 39 FRDKQLDAIQAVL----SG---RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 39 ~~~~Q~~~i~~~l----~~---~dvlv~apTGsGKTl~~ 70 (487)
++|+|...+..+. +| +-.++.||.|.||+..+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA 41 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLI 41 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHH
Confidence 4677777776654 44 35678999999999654
No 363
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.31 E-value=0.99 Score=44.73 Aligned_cols=33 Identities=18% Similarity=0.030 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHHc--C---CCEEEEcCCCchhhHHHH
Q 011387 39 FRDKQLDAIQAVLS--G---RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 39 ~~~~Q~~~i~~~l~--~---~dvlv~apTGsGKTl~~~ 71 (487)
++|+|...+..+.. + +-.++.+|.|.||+..+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~ 39 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ 39 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH
Confidence 46888888877653 3 357899999999997654
No 364
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.31 E-value=0.35 Score=47.13 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=40.6
Q ss_pred CCCCCcHHHHHHHHHHHcCC-CEEEEcCCCchhhHHH-HHhH-hcCCCeEEEeCcHHHH
Q 011387 35 GHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCY-QIPA-LAKPGIVLVVSPLIAL 90 (487)
Q Consensus 35 g~~~~~~~Q~~~i~~~l~~~-dvlv~apTGsGKTl~~-~lp~-l~~~~~~lvl~P~~~L 90 (487)
.+..+++-|...+..+.+.+ ++++.+.||||||... .+.+ +....++|.+=-+.+|
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaEL 212 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAEL 212 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhh
Confidence 34578999999988877665 9999999999999632 2222 2235578887777666
No 365
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.28 E-value=0.7 Score=47.70 Aligned_cols=33 Identities=15% Similarity=-0.079 Sum_probs=21.3
Q ss_pred CCEEEEcCCCchhhHHHHHhH----hcCCCeEEEeCc
Q 011387 54 RDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSP 86 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~----l~~~~~~lvl~P 86 (487)
.=+++.|+||+|||...+--+ ...+..+++++.
T Consensus 196 ~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~Sl 232 (434)
T TIGR00665 196 DLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSL 232 (434)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 346778899999996543211 223566777763
No 366
>PRK11054 helD DNA helicase IV; Provisional
Probab=92.24 E-value=0.36 Score=52.55 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=47.9
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhH---h----cCCCeEEEeCcHHHHHHHHHHHHHH
Q 011387 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---L----AKPGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~---l----~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
..+++-|++++.. ...+++|.|..|||||.+..--+ + ..+..+++++.++..+....+++..
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4699999999864 34578999999999997653221 2 1256899999999999988888765
No 367
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.21 E-value=0.11 Score=60.28 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=76.8
Q ss_pred ceEEEEecccchHHHHHHHHHhCC-CceEEecCCCC-----------HHHHHHHHHHHhcCCCcEEEEcCccccccccCC
Q 011387 259 TCAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLN-----------DKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326 (487)
Q Consensus 259 ~~~iIf~~s~~~~~~l~~~L~~~g-~~~~~~h~~l~-----------~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~ 326 (487)
-++|+|+..+..+..+.+.+.+.+ .....+.|.+. +..+.+++..|....+++|++|.++..|+|.+.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 467999999999999988887642 22223333321 223567888999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHhccCCCC
Q 011387 327 VRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (487)
Q Consensus 327 v~~VI~~~~p~s~~~y~Qr~GRagR~g 353 (487)
+..|++++.|.....|+|..||+-+.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999996643
No 368
>CHL00195 ycf46 Ycf46; Provisional
Probab=92.18 E-value=0.98 Score=47.08 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
+.+++.+|+|+|||+..
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 67999999999999865
No 369
>PRK14701 reverse gyrase; Provisional
Probab=92.16 E-value=0.57 Score=55.76 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=54.6
Q ss_pred CCceEEEEecccchHHHHHHHHHhC------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~ 318 (487)
.+.+++|.++|+.-+.++++.|+.. ++.+..+||+++.+++.++++.+.+|+.+|||+|+..
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgr 188 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQF 188 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCch
Confidence 4567999999999999999988872 5677899999999999999999999999999999853
No 370
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.14 E-value=0.5 Score=51.03 Aligned_cols=99 Identities=13% Similarity=0.026 Sum_probs=70.8
Q ss_pred eEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC-C-cEEEEcCccccccccCCCcEEEEeCCCC
Q 011387 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-K-QVVVATVAFGMGIDRKDVRLVCHFNIPK 337 (487)
Q Consensus 260 ~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~-~vLVaT~~~~~GiDip~v~~VI~~~~p~ 337 (487)
+++||+.-......+...|...++....+.|.|+...|.+.+..|..+. . -.+++..+.+-|+|+-...+|+..|+=+
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 5666666666666666666666666777778888888888888877543 2 2455677778888888888888888777
Q ss_pred CHHHHHHHHhccCCCCCCceE
Q 011387 338 SMEAFYQESGRAGRDQLPSKS 358 (487)
Q Consensus 338 s~~~y~Qr~GRagR~g~~g~~ 358 (487)
++..--|.+-|+.|-|+.-.+
T Consensus 621 np~~eeQaidR~hrigq~k~v 641 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPV 641 (674)
T ss_pred ChHHHHHHHHHHHHhccccee
Confidence 888888888888887765444
No 371
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.13 E-value=1.7 Score=40.72 Aligned_cols=50 Identities=16% Similarity=-0.014 Sum_probs=33.7
Q ss_pred CCCEEEEcCCCchhhHHHH---HhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 011387 53 GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~---lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~ 103 (487)
|..+++.+|+|+|||...+ ...+..+.++++++- -+-..+..+++.++|.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~~~g~ 73 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMAQFGW 73 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHHHhCC
Confidence 4678899999999997443 334556778888883 3444555555666554
No 372
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.11 E-value=0.39 Score=51.08 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=47.8
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhHh----cCCCeEEEeCcHHHHHHHHHHH
Q 011387 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIG 97 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~--~dvlv~apTGsGKTl~~~lp~l----~~~~~~lvl~P~~~L~~q~~~~ 97 (487)
..+|+|.+.++++... +.+.+..++-+|||.+.+-.+- .....++++.|+..++.+.++.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~ 81 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKE 81 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHH
Confidence 5789999999998765 5788899999999996443322 2378899999999999987743
No 373
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.10 E-value=0.74 Score=48.18 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=67.2
Q ss_pred HHHHHHHcC-----CCEEEEcCCCchhhHHHH---HhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHH
Q 011387 45 DAIQAVLSG-----RDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (487)
Q Consensus 45 ~~i~~~l~~-----~dvlv~apTGsGKTl~~~---lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~ 116 (487)
.-++.++.| .-+++.+|+|+|||...+ .-++.++.++++++ .-+-..|...+..++|+...
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg~~~~---------- 318 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWGIDFE---------- 318 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcCCChH----------
Confidence 445666644 467899999999996543 23345567888887 34445666677777764210
Q ss_pred HHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEecccccc
Q 011387 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (487)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~ 171 (487)
.....+ .+.++...|....-..++..+.+.......+++|||=..-+.
T Consensus 319 -----~~~~~g--~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 319 -----EMEQQG--LLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred -----HHhhCC--cEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 001111 144555455544434566667666666678899999888653
No 374
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.09 E-value=0.57 Score=49.41 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=55.0
Q ss_pred EEEEecccchHHHHHHHHHh----C-CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccccc-cccCCCcE
Q 011387 261 AIVYCLERTTCDELSAYLSA----G-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDVRL 329 (487)
Q Consensus 261 ~iIf~~s~~~~~~l~~~L~~----~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~-----~~~~G-iDip~v~~ 329 (487)
+||.++||+-|.++++.+.. . ++.+..+.||.+...+...++ .| .+|||||+ .+.+| +|...+++
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 89999999999999988875 2 577899999999877665444 46 99999998 35555 88888998
Q ss_pred EEE
Q 011387 330 VCH 332 (487)
Q Consensus 330 VI~ 332 (487)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 884
No 375
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.09 E-value=0.2 Score=52.72 Aligned_cols=38 Identities=29% Similarity=0.353 Sum_probs=29.7
Q ss_pred cCCC-CCcHHHHHHHHHHH----cCCCEEEEcCCCchhhHHHH
Q 011387 34 FGHA-QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 34 fg~~-~~~~~Q~~~i~~~l----~~~dvlv~apTGsGKTl~~~ 71 (487)
|+|. +|+.+|.+.+..+. +|+--+...|||+|||+..+
T Consensus 10 F~fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLi 52 (821)
T KOG1133|consen 10 FPFPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLI 52 (821)
T ss_pred cCCCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHH
Confidence 4443 68899999887654 67877889999999998654
No 376
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=0.11 Score=49.90 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=15.8
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
-|+++++|||||||+.++
T Consensus 98 SNILLiGPTGsGKTlLAq 115 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred ccEEEECCCCCcHHHHHH
Confidence 479999999999998765
No 377
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.04 E-value=1.7 Score=38.95 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=23.7
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecC
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT 202 (487)
.+...++||||+|.+... ....|.......|....+.++++
T Consensus 94 ~~~~kviiide~~~l~~~------~~~~Ll~~le~~~~~~~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA------AANALLKTLEEPPPNTLFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHH------HHHHHHHHhcCCCCCeEEEEEEC
Confidence 345779999999998652 12334444444444444555544
No 378
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=92.03 E-value=1.2 Score=44.87 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=15.9
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (487)
+.+++.+|+|+|||.....
T Consensus 157 ~gvLL~GppGtGKT~laka 175 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKA 175 (364)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5699999999999986543
No 379
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=91.91 E-value=1.2 Score=45.72 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~l 72 (487)
.+.+++.+|+|+|||+.+-.
T Consensus 217 p~gVLL~GPPGTGKT~LAra 236 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKA 236 (438)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 46799999999999987643
No 380
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.89 E-value=1.4 Score=47.02 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH--HhHh---cCCCeEEEeCcHHHHHHHHHH
Q 011387 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL---AKPGIVLVVSPLIALMENQVI 96 (487)
Q Consensus 22 l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~--lp~l---~~~~~~lvl~P~~~L~~q~~~ 96 (487)
..+.+.+.|+.+|++..+.. .+-...+.+-.++..|==.|||..-. +..+ ..+-.+++++|.+..++..++
T Consensus 227 ~a~r~~~~lk~~Fdi~~~s~----~~~~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~ 302 (738)
T PHA03368 227 HAERVERFLRTVFNTPLFSD----AAVRHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFE 302 (738)
T ss_pred HHHHHHHHHHHHcCCccccH----HHHHHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHH
Confidence 34557788899999877753 22233466777888899999997433 3322 248899999999999999998
Q ss_pred HHHHc
Q 011387 97 GLKEK 101 (487)
Q Consensus 97 ~l~~~ 101 (487)
++...
T Consensus 303 eI~~~ 307 (738)
T PHA03368 303 EIGAR 307 (738)
T ss_pred HHHHH
Confidence 88774
No 381
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=91.88 E-value=0.6 Score=47.67 Aligned_cols=69 Identities=19% Similarity=0.288 Sum_probs=48.4
Q ss_pred HHcCCCCCcHHHHHHHHHH---H-cCCCEEEEcCCCchhhHHHHHhHh-------cCCCeEEEeCcHHHHHHHHHHHHHH
Q 011387 32 WHFGHAQFRDKQLDAIQAV---L-SGRDCFCLMPTGGGKSMCYQIPAL-------AKPGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 32 ~~fg~~~~~~~Q~~~i~~~---l-~~~dvlv~apTGsGKTl~~~lp~l-------~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
-.|.++..+|-|-+-+-.+ + .+.++++.+|+|+|||.+.+-.++ ....+.|+.+-|..=++....+|+.
T Consensus 10 v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 10 VYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred EecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHH
Confidence 3588999999998876544 3 346899999999999976442222 1256788888777666666655543
No 382
>PRK05636 replicative DNA helicase; Provisional
Probab=91.87 E-value=0.75 Score=48.20 Aligned_cols=142 Identities=17% Similarity=0.165 Sum_probs=63.2
Q ss_pred CEEEEcCCCchhhHHHH-Hh---HhcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceEEe-cCCCCHHHHHHHHHHHhc
Q 011387 55 DCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDS 126 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp---~l~~~~~~lvl~---P~~~L~~q~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 126 (487)
=+++.|.||.|||...+ +. ++..+..+++++ |..+|+........ ++....+ .+.....+...+......
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s--~v~~~~i~~g~l~~~e~~~~~~a~~~ 344 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEA--EVRLSDMRGGKMDEDAWEKLVQRLGK 344 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34678899999996443 21 223456677774 44445444332221 1221111 222333333332222211
Q ss_pred CCCcccEEEeCcccccCh-hhHHHHHhhhhcCCccEEEEeccccccccCC-CChHH-----HHHHHHHHHhCCCCcEEEE
Q 011387 127 GKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRPS-----YRKLSSLRNYLPDVPILAL 199 (487)
Q Consensus 127 ~~~~~~il~~tpe~v~t~-~~~~~l~~~~~~~~l~~lViDEah~~~~~g~-~f~~~-----~~~l~~l~~~~~~~~~i~l 199 (487)
.. ...+.+- ..--.|. .......+......+++||||=.|.+..-.. .-|.. .+.|+.+.+.+ ++|++++
T Consensus 345 l~-~~~l~I~-d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel-~ipVi~l 421 (505)
T PRK05636 345 IA-QAPIFID-DSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKEL-DVPLIAI 421 (505)
T ss_pred Hh-cCCEEEE-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHh-CCeEEEE
Confidence 11 1222221 1111121 1222233333334589999999999863211 11211 12233333333 7888888
Q ss_pred ec
Q 011387 200 TA 201 (487)
Q Consensus 200 SA 201 (487)
|-
T Consensus 422 sQ 423 (505)
T PRK05636 422 SQ 423 (505)
T ss_pred ee
Confidence 74
No 383
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=91.86 E-value=1 Score=41.44 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
-++++.+|+|+|||.+..
T Consensus 49 P~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSIL 66 (333)
T ss_pred CceEeeCCCCCchhhHHH
Confidence 488999999999998753
No 384
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.82 E-value=1.1 Score=45.53 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=26.4
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHH
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (487)
.+..+++||||+|.+... ....+.+.....|...++++.++-...+
T Consensus 125 ~~~~kvvIIdea~~l~~~------~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIA------AFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred cCCeEEEEEeChhhCCHH------HHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 455789999999998642 1233444444444444555555543333
No 385
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=91.82 E-value=3.2 Score=44.54 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHH---cCCCEEEEcCCCchhhHHHHHh---Hhc-CCCeEEEeCcHHHHHHHHHHHHHH
Q 011387 40 RDKQLDAIQAVL---SGRDCFCLMPTGGGKSMCYQIP---ALA-KPGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 40 ~~~Q~~~i~~~l---~~~dvlv~apTGsGKTl~~~lp---~l~-~~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
.|.=.+=|+.++ +.+-.++.+|=|-|||.+..+. .+. .+..++|.+|...-+++..++++.
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHH
Confidence 444444444443 4566788999999999764322 122 477899999988888887777655
No 386
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.81 E-value=1.5 Score=47.07 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=23.8
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCC
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~ 203 (487)
+..+++||||+|.+... ....|.+.....+...++++.++-
T Consensus 119 ~~~kVvIIDEa~~L~~~------a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTA------AFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred CCeEEEEEeChHhCCHH------HHHHHHHHHhcCCCCeEEEEEeCC
Confidence 45679999999988641 223344444444444455555543
No 387
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.79 E-value=1 Score=45.62 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=29.6
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHH
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 210 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~ 210 (487)
.+..++++|||+|.+.... ...|-+.....|+..++++++|-+..+...
T Consensus 115 ~~~~kViiIDead~m~~~a------anaLLk~LEep~~~~~fIL~a~~~~~llpT 163 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA------ANALLKAVEEPPPRTVWLLCAPSPEDVLPT 163 (394)
T ss_pred cCCcEEEEEechhhcCHHH------HHHHHHHhhcCCCCCeEEEEECChHHChHH
Confidence 3557899999999986521 133444445555555666666665444433
No 388
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=91.79 E-value=0.2 Score=44.49 Aligned_cols=42 Identities=21% Similarity=0.141 Sum_probs=23.2
Q ss_pred EEEcCCCchhhHHHHHhHhc--CC--CeEEEeCcHHHHHHHHHHHH
Q 011387 57 FCLMPTGGGKSMCYQIPALA--KP--GIVLVVSPLIALMENQVIGL 98 (487)
Q Consensus 57 lv~apTGsGKTl~~~lp~l~--~~--~~~lvl~P~~~L~~q~~~~l 98 (487)
++.|+-|-|||.+.-+.+-. .. ..++|.+|..+-++...+.+
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~ 46 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFA 46 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHH
Confidence 47899999999876544322 22 36999999988766655443
No 389
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.75 E-value=4.7 Score=41.20 Aligned_cols=47 Identities=9% Similarity=0.238 Sum_probs=27.8
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHH
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQ 208 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~ 208 (487)
..++++||=+-+.-. -......+..+.... |...++.++||......
T Consensus 182 ~~DvViIDTaGr~~~----d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~ 229 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQ----EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE 229 (429)
T ss_pred CCCEEEEECCCCCcc----hHHHHHHHHHHhhhcCCcEEEEEeccccChhHH
Confidence 478888888876432 123334555554433 34457788888765543
No 390
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.74 E-value=1.3 Score=38.87 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=32.0
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHH
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~ 212 (487)
+..+++||||||.+.. .+...|.+.....|..-+++|+++-...+...+.
T Consensus 101 ~~~KviiI~~ad~l~~------~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~ 150 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE------EAQNALLKTLEEPPENTYFILITNNPSKILPTIR 150 (162)
T ss_dssp SSSEEEEEETGGGS-H------HHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHH
T ss_pred CCceEEEeehHhhhhH------HHHHHHHHHhcCCCCCEEEEEEECChHHChHHHH
Confidence 4578999999999864 2335666667777766666777776655555443
No 391
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.73 E-value=5.1 Score=43.94 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=33.1
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHh-CCCCcEEEEecCCChHHHHHHHHHh
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESL 215 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i~~~l 215 (487)
..++|+||=+-+... -......+..+... .|...++.++||.......++...+
T Consensus 263 ~~D~VLIDTAGRs~~----d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 263 DKHLVLIDTVGMSQR----DRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred CCCEEEEeCCCCCcc----CHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 457888888876532 23333444444432 2445578999998877777666554
No 392
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.72 E-value=0.73 Score=48.62 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=24.7
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCC
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~ 203 (487)
.+..+++||||||.+.... ...|.+.....|+.-++++..|-
T Consensus 117 ~g~~kViIIDEa~~ls~~a------~naLLK~LEepp~~v~fIL~Ttd 158 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS------FNALLKTLEEPPEYVKFILATTD 158 (546)
T ss_pred cCCcEEEEEechhhccHHH------HHHHHHHHhcCCCCceEEEEECC
Confidence 4567899999999986522 23444555555543334443343
No 393
>PRK06321 replicative DNA helicase; Provisional
Probab=91.67 E-value=1.3 Score=46.06 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=69.5
Q ss_pred HHHHHHHcC---CC-EEEEcCCCchhhHHHHHhH----hcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceEEe-cCCC
Q 011387 45 DAIQAVLSG---RD-CFCLMPTGGGKSMCYQIPA----LAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFL-SSTQ 112 (487)
Q Consensus 45 ~~i~~~l~~---~d-vlv~apTGsGKTl~~~lp~----l~~~~~~lvl~---P~~~L~~q~~~~l~~~~~~~~~~-~~~~ 112 (487)
..++.+..| .+ +++.|.||.|||.-.+--+ ...+..+++++ |..+|+....... .++....+ .+..
T Consensus 214 ~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~~--s~v~~~~i~~~~l 291 (472)
T PRK06321 214 IDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSR--SEVESKKISVGDL 291 (472)
T ss_pred HHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhh--cCCCHHHhhcCCC
Confidence 344555544 34 4667799999997544222 23356677776 3444444332211 12322222 1222
Q ss_pred CHHHHHHHHHHHhcCCCcccEEEe-CcccccChhhHHHHHhhhhcCCccEEEEeccccccccCC--CChHHHHHHHHHHH
Q 011387 113 TMQVKTKIYEDLDSGKPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH--DFRPSYRKLSSLRN 189 (487)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~il~~-tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~--~f~~~~~~l~~l~~ 189 (487)
...+..........-. ...+.+- +| -+..........+......++++|||=.+.+...+. ........+..+.+
T Consensus 292 ~~~e~~~~~~a~~~l~-~~~~~idd~~-~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr 369 (472)
T PRK06321 292 SGRDFQRIVSVVNEMQ-EHTLLIDDQP-GLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISR 369 (472)
T ss_pred CHHHHHHHHHHHHHHH-cCCEEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHH
Confidence 3333322222221111 1222222 12 111122223333333345689999999998864331 11111222333322
Q ss_pred hCC------CCcEEEEecCC
Q 011387 190 YLP------DVPILALTATA 203 (487)
Q Consensus 190 ~~~------~~~~i~lSAT~ 203 (487)
.+. ++|++++|-..
T Consensus 370 ~LK~lAkel~vpVi~lsQLn 389 (472)
T PRK06321 370 MLKNLARELNIPILCLSQLS 389 (472)
T ss_pred HHHHHHHHhCCcEEEEeecC
Confidence 221 78888887653
No 394
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=91.66 E-value=0.27 Score=54.37 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=48.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH--Hh-Hhc----CCCeEEEeCcHHHHHHHHHHHHHHc
Q 011387 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IP-ALA----KPGIVLVVSPLIALMENQVIGLKEK 101 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~--lp-~l~----~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (487)
..|++-|++++.. ...+++|.|..|||||.+.. +. .+. ....+++++-|+..+.+..+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 4689999999975 35689999999999997643 22 122 2357999999999888888887754
No 395
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.63 E-value=0.95 Score=48.02 Aligned_cols=77 Identities=22% Similarity=0.262 Sum_probs=65.4
Q ss_pred CCCceEEEEecccchHHHHH----HHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-cccccccCCCcEE
Q 011387 256 NGDTCAIVYCLERTTCDELS----AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLV 330 (487)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~----~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~-~~~GiDip~v~~V 330 (487)
..+.++..-++|---|++.+ ++|...|+.+..+.|++..+.|.++++...+|+++++|.|-| +...++..+.-.|
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLV 388 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLV 388 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEE
Confidence 35677899999986665555 455557999999999999999999999999999999999988 5778999998888
Q ss_pred EE
Q 011387 331 CH 332 (487)
Q Consensus 331 I~ 332 (487)
|.
T Consensus 389 Ii 390 (677)
T COG1200 389 II 390 (677)
T ss_pred EE
Confidence 83
No 396
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.56 E-value=0.14 Score=48.83 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=16.8
Q ss_pred CEEEEcCCCchhhH--HHHHhHhcC
Q 011387 55 DCFCLMPTGGGKSM--CYQIPALAK 77 (487)
Q Consensus 55 dvlv~apTGsGKTl--~~~lp~l~~ 77 (487)
=++|.+|||||||. +.++-.+.+
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhc
Confidence 36889999999985 445555554
No 397
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.56 E-value=6.8 Score=40.16 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=29.3
Q ss_pred EEEEcCCCchhhHHHH-HhH-h--cCCCeEEEeC--cHHHHHHHHHHHHHH-cCCce
Q 011387 56 CFCLMPTGGGKSMCYQ-IPA-L--AKPGIVLVVS--PLIALMENQVIGLKE-KGIAG 105 (487)
Q Consensus 56 vlv~apTGsGKTl~~~-lp~-l--~~~~~~lvl~--P~~~L~~q~~~~l~~-~~~~~ 105 (487)
+++++++|+|||.+.. +.. + ..+.+++++. +.+.-+.+|...+.. .+++.
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~ 158 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPV 158 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCce
Confidence 6788999999997643 222 2 2355565555 455555555555433 45443
No 398
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=91.53 E-value=0.32 Score=56.86 Aligned_cols=61 Identities=23% Similarity=0.277 Sum_probs=47.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHH---hHhcC---CCeEEEeCcHHHHHHHHHHHHHH
Q 011387 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI---PALAK---PGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~l---p~l~~---~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
++++-|+++|.. .+++++|.|.-|||||.+..- -.+.. ...+++|+-|++.+.+..+++.+
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHH
Confidence 468999999984 688999999999999987542 22222 24599999999999887766655
No 399
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.52 E-value=1.5 Score=42.98 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=24.8
Q ss_pred CCcHHHHHHHHHHH----cCC---CEEEEcCCCchhhHHH
Q 011387 38 QFRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l----~~~---dvlv~apTGsGKTl~~ 70 (487)
.++|+|...+..+. .++ -.++.+|.|.||+..+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA 42 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV 42 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH
Confidence 46788888877654 343 5789999999999654
No 400
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=91.42 E-value=1 Score=40.28 Aligned_cols=33 Identities=27% Similarity=0.093 Sum_probs=21.6
Q ss_pred CEEEEcCCCchhhHHHHHhHh---cCCCeEEEeCcH
Q 011387 55 DCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPL 87 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~lp~l---~~~~~~lvl~P~ 87 (487)
=.++.+|.+||||.-.+--+- ..+.++++..|.
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~ 41 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPA 41 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecc
Confidence 357899999999975332221 236667777764
No 401
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=91.42 E-value=0.86 Score=46.90 Aligned_cols=54 Identities=28% Similarity=0.354 Sum_probs=47.4
Q ss_pred ceEEEEecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 011387 259 TCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (487)
Q Consensus 259 ~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~ 316 (487)
.-+||+++||+-+.++.+.|.. -++.+..+.|||+...+++++.. .-+|+|||+
T Consensus 264 ~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 264 PIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred ceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 3489999999999999999875 48899999999999888888775 678999998
No 402
>PRK08506 replicative DNA helicase; Provisional
Probab=91.41 E-value=0.79 Score=47.76 Aligned_cols=144 Identities=19% Similarity=0.148 Sum_probs=64.3
Q ss_pred CCEEEEcCCCchhhHHHHHh---HhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceEEe-cCCCCHHHHHHHHHHHhcC
Q 011387 54 RDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL-SSTQTMQVKTKIYEDLDSG 127 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~~L~~q~~~~l~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 127 (487)
.=+++.|.||.|||...+-- +...+..+++++.- .=..|...++.. .+++...+ .+.....+...+.......
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l 271 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACDEL 271 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 34567889999999754422 23346677777642 222333444433 22322111 1222333322222211111
Q ss_pred CCcccEEEeCcccccChh-hHHHHHhhhh-cCCccEEEEeccccccccCCCChHHHH-------HHHHHHHhCCCCcEEE
Q 011387 128 KPSLRLLYVTPELTATPG-FMSKLKKIHS-RGLLNLVAIDEAHCISSWGHDFRPSYR-------KLSSLRNYLPDVPILA 198 (487)
Q Consensus 128 ~~~~~il~~tpe~v~t~~-~~~~l~~~~~-~~~l~~lViDEah~~~~~g~~f~~~~~-------~l~~l~~~~~~~~~i~ 198 (487)
. ...+.+- +.--.|.. ....+.+... .+.++++|||=.+.+...+. +..... .|+.+.+.+ ++|+++
T Consensus 272 ~-~~~l~I~-d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~-~~~r~~ev~~isr~LK~lAkel-~ipVi~ 347 (472)
T PRK08506 272 S-KKKLFVY-DSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGN-FKDRHLQISEISRGLKLLAREL-DIPIIA 347 (472)
T ss_pred H-cCCeEEE-CCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCC-CCCHHHHHHHHHHHHHHHHHHh-CCcEEE
Confidence 0 1122221 11112322 2222333222 23589999999998864332 222222 233333322 788888
Q ss_pred EecC
Q 011387 199 LTAT 202 (487)
Q Consensus 199 lSAT 202 (487)
+|-.
T Consensus 348 lsQL 351 (472)
T PRK08506 348 LSQL 351 (472)
T ss_pred Eeec
Confidence 8754
No 403
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.36 E-value=0.41 Score=47.03 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHHH-HcCCCEEEEcCCCchhhHHHH--HhH---hcCCCeEEEeCcHHHH
Q 011387 38 QFRDKQLDAIQAV-LSGRDCFCLMPTGGGKSMCYQ--IPA---LAKPGIVLVVSPLIAL 90 (487)
Q Consensus 38 ~~~~~Q~~~i~~~-l~~~dvlv~apTGsGKTl~~~--lp~---l~~~~~~lvl~P~~~L 90 (487)
.+.+.|.+.+..+ ..++++++.++||||||.... +.. .....++++|-.+.+|
T Consensus 132 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 132 IMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 3677888888754 466899999999999995432 111 1224456655555544
No 404
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.36 E-value=0.94 Score=47.51 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.7
Q ss_pred EEEEcCCCchhhHHHH
Q 011387 56 CFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 56 vlv~apTGsGKTl~~~ 71 (487)
+++.+|+|+|||.+..
T Consensus 39 ~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4999999999997753
No 405
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.26 E-value=2 Score=44.43 Aligned_cols=57 Identities=21% Similarity=0.067 Sum_probs=34.4
Q ss_pred HHHHHHHc-----CCCEEEEcCCCchhhHHHHHh---HhcCCCeEEEeCcHHHHHHHHHHHHHHcC
Q 011387 45 DAIQAVLS-----GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKEKG 102 (487)
Q Consensus 45 ~~i~~~l~-----~~dvlv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~~L~~q~~~~l~~~~ 102 (487)
.-++.++. |.-+++.+++|+|||...+-- ....+.++++++.-- -..|...+..+++
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE-s~~qi~~ra~rlg 145 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE-SLQQIKMRAIRLG 145 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC-CHHHHHHHHHHcC
Confidence 34556664 345788999999999754322 223356788887643 3345555555544
No 406
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.26 E-value=2.7 Score=42.46 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCchhhHH
Q 011387 53 GRDCFCLMPTGGGKSMC 69 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~ 69 (487)
...+++.||+|+|||--
T Consensus 113 ~nplfi~G~~GlGKTHL 129 (408)
T COG0593 113 YNPLFIYGGVGLGKTHL 129 (408)
T ss_pred CCcEEEECCCCCCHHHH
Confidence 35689999999999963
No 407
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.22 E-value=1.6 Score=48.96 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
.++++.+|+|+|||...
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 48999999999999765
No 408
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.21 E-value=1.1 Score=43.38 Aligned_cols=17 Identities=29% Similarity=0.258 Sum_probs=13.8
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
+.+++++|||+|||...
T Consensus 195 ~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTL 211 (282)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778999999999654
No 409
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=91.20 E-value=0.17 Score=54.59 Aligned_cols=56 Identities=13% Similarity=0.030 Sum_probs=43.0
Q ss_pred CCEEEEcCCCchhhHHHHHhHhcC-CCeEEEeCcHHHHHHHHHHHHHH-cCCceEEec
Q 011387 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~~~~l~~-~~~~~~~~~ 109 (487)
.++++.||||||||..+.+|.+.. ++.+||+=|--++...+....++ .|-++..+.
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~S~VV~D~KGE~~~~Tag~R~~~~G~~V~~fd 233 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGHSSVITDLKGELWALTAGWRQKHAKNKVLRFE 233 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCCCEEEEeCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 579999999999999999998765 77899999999997766555433 354444433
No 410
>PRK07004 replicative DNA helicase; Provisional
Probab=91.17 E-value=1.4 Score=45.82 Aligned_cols=143 Identities=22% Similarity=0.184 Sum_probs=64.3
Q ss_pred CCEEEEcCCCchhhHHHHHh----HhcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceEEe-cCCCCHHHHHHHHHHHh
Q 011387 54 RDCFCLMPTGGGKSMCYQIP----ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLD 125 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp----~l~~~~~~lvl~---P~~~L~~q~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 125 (487)
.=+++.|.||.|||...+-- ++..+..+++++ +..+|+........ ++....+ .+.....+...+.....
T Consensus 214 ~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~~--~v~~~~i~~g~l~~~e~~~~~~a~~ 291 (460)
T PRK07004 214 ELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSVG--RLDQHRMRTGRLTDEDWPKLTHAVQ 291 (460)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhhc--CCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 44677889999999754421 233466777776 34444444332211 2222111 22233333322222211
Q ss_pred cCCCcccEEEe-CcccccChh-hHHHHHhhhh-cCCccEEEEeccccccccCC-CChH-HH----HHHHHHHHhCCCCcE
Q 011387 126 SGKPSLRLLYV-TPELTATPG-FMSKLKKIHS-RGLLNLVAIDEAHCISSWGH-DFRP-SY----RKLSSLRNYLPDVPI 196 (487)
Q Consensus 126 ~~~~~~~il~~-tpe~v~t~~-~~~~l~~~~~-~~~l~~lViDEah~~~~~g~-~f~~-~~----~~l~~l~~~~~~~~~ 196 (487)
.-. ...+.+. +|. .|+. ......+... .+.+++||||=.+.+...+. .-|. .+ +.|+.+.+.+ ++|+
T Consensus 292 ~l~-~~~l~I~d~~~--~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel-~ipV 367 (460)
T PRK07004 292 KMS-EAQLFIDETGG--LNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKEL-DVPV 367 (460)
T ss_pred HHh-cCCEEEECCCC--CCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHh-CCeE
Confidence 110 1223322 221 1222 2222222322 24589999999998864321 1111 11 2222222222 7888
Q ss_pred EEEecC
Q 011387 197 LALTAT 202 (487)
Q Consensus 197 i~lSAT 202 (487)
+++|--
T Consensus 368 i~lsQL 373 (460)
T PRK07004 368 IALSQL 373 (460)
T ss_pred EEEecc
Confidence 888753
No 411
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.07 E-value=1.9 Score=45.05 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=24.5
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCC
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~ 203 (487)
.+...++||||||.+... ....|.......|...++++.+|-
T Consensus 117 ~~~~KVvIIDEad~Lt~~------a~naLLk~LEepp~~~v~Il~tt~ 158 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKE------AFNALLKTLEEPPPRTIFILCTTE 158 (486)
T ss_pred cCCeeEEEEEChhhcCHH------HHHHHHHHHhcCCCCeEEEEEECC
Confidence 345679999999988542 223444444444444455555443
No 412
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.03 E-value=5.9 Score=38.69 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=14.2
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
.+++.||+|+|||.+.
T Consensus 40 ~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA 55 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999765
No 413
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.02 E-value=4.5 Score=40.39 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=24.5
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCC
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~ 203 (487)
.+...++||||||.+.. .....|-+.....|...++++.++.
T Consensus 139 ~g~~rVviIDeAd~l~~------~aanaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 139 DGNWRIVIIDPADDMNR------NAANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred cCCceEEEEEchhhcCH------HHHHHHHHHHhcCCCCceEEEEECC
Confidence 45678999999999854 2223444445554444444444443
No 414
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.99 E-value=0.72 Score=44.95 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=34.4
Q ss_pred CCcHHHHHHHHHHH-cCCCEEEEcCCCchhhHHH--HHhHhcC---CCeEEEeCcHHHH
Q 011387 38 QFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCY--QIPALAK---PGIVLVVSPLIAL 90 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l-~~~dvlv~apTGsGKTl~~--~lp~l~~---~~~~lvl~P~~~L 90 (487)
.+.+.|.+.+..+. .++++++++|||||||... ++..+.. ..+++++=-..++
T Consensus 116 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 46676777776544 5679999999999999653 2222221 4566666665555
No 415
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.91 E-value=0.37 Score=47.79 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=27.1
Q ss_pred HHcCCCEEEEcCCCchhhHHH--HHhHhcCCCeEEEeCcHHHH
Q 011387 50 VLSGRDCFCLMPTGGGKSMCY--QIPALAKPGIVLVVSPLIAL 90 (487)
Q Consensus 50 ~l~~~dvlv~apTGsGKTl~~--~lp~l~~~~~~lvl~P~~~L 90 (487)
+..++++++.+|||||||... ++..+....+++.+=.+.+|
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccc
Confidence 446789999999999999642 22223334566666666555
No 416
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.90 E-value=2.4 Score=45.20 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=13.0
Q ss_pred CEEEEcCCCchhhHH
Q 011387 55 DCFCLMPTGGGKSMC 69 (487)
Q Consensus 55 dvlv~apTGsGKTl~ 69 (487)
.+++.+++|+|||..
T Consensus 316 pL~LyG~sGsGKTHL 330 (617)
T PRK14086 316 PLFIYGESGLGKTHL 330 (617)
T ss_pred cEEEECCCCCCHHHH
Confidence 488999999999964
No 417
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.88 E-value=1.4 Score=40.36 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=22.4
Q ss_pred CCCEEEEcCCCchhhHHHHHhH---hcCCCeEEEeCc
Q 011387 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSP 86 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~lp~---l~~~~~~lvl~P 86 (487)
|.-+.+.+|+|+|||...+-.+ ...+..++++.-
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3557899999999997544222 234556666654
No 418
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.84 E-value=0.4 Score=45.79 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEe
Q 011387 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (487)
Q Consensus 44 ~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl 84 (487)
++++..+..|+++++.+|+|+|||.+...-+-..+...+.+
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34445566789999999999999987654333334444444
No 419
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.80 E-value=10 Score=39.47 Aligned_cols=57 Identities=19% Similarity=0.137 Sum_probs=30.2
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHhc
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~ 216 (487)
....++++||.+-+.- .-......+..+.... |.-.++.++||.......++...+.
T Consensus 332 L~d~d~VLIDTaGr~~----~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~ 389 (484)
T PRK06995 332 LRNKHIVLIDTIGMSQ----RDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYR 389 (484)
T ss_pred ccCCCeEEeCCCCcCh----hhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhc
Confidence 3445789999965421 1111112222222211 3335789999988877666665543
No 420
>PHA00350 putative assembly protein
Probab=90.77 E-value=2 Score=43.28 Aligned_cols=24 Identities=29% Similarity=0.149 Sum_probs=17.8
Q ss_pred EEEEcCCCchhhHHHH----HhHhcCCC
Q 011387 56 CFCLMPTGGGKSMCYQ----IPALAKPG 79 (487)
Q Consensus 56 vlv~apTGsGKTl~~~----lp~l~~~~ 79 (487)
.++.+..|||||+... +|++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR 31 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGR 31 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCC
Confidence 4788999999998653 56666654
No 421
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=90.68 E-value=2.5 Score=39.53 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=23.6
Q ss_pred HHHcCC-CEEEEcCCCchhhHHHH--HhHhcCCCeEEEeCc
Q 011387 49 AVLSGR-DCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSP 86 (487)
Q Consensus 49 ~~l~~~-dvlv~apTGsGKTl~~~--lp~l~~~~~~lvl~P 86 (487)
.+..|+ -+.++++-|||||..-- +..+..+..++|+.|
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~ 86 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID 86 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec
Confidence 344566 56789999999998765 222333444444444
No 422
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=90.55 E-value=1.7 Score=43.02 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=25.1
Q ss_pred CCcHHHHHHHHHHH----cCC---CEEEEcCCCchhhHHHH
Q 011387 38 QFRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l----~~~---dvlv~apTGsGKTl~~~ 71 (487)
.++|+|...+..+. +|+ -.++.||.|.||+..+.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~ 42 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH
Confidence 36788888887764 343 56799999999997543
No 423
>PRK06749 replicative DNA helicase; Provisional
Probab=90.36 E-value=2.6 Score=43.26 Aligned_cols=32 Identities=16% Similarity=-0.140 Sum_probs=20.3
Q ss_pred CEEEEcCCCchhhHHHHHh---HhcCCCeEEEeCc
Q 011387 55 DCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSP 86 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~lp---~l~~~~~~lvl~P 86 (487)
=+++.|.||.|||...+-- +...+..+++++.
T Consensus 188 LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSl 222 (428)
T PRK06749 188 FVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSL 222 (428)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEe
Confidence 3567779999999754422 2233556777764
No 424
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.34 E-value=0.48 Score=46.87 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=23.3
Q ss_pred HHcCCCEEEEcCCCchhhHHH--HHhHhcCCCeEEEe
Q 011387 50 VLSGRDCFCLMPTGGGKSMCY--QIPALAKPGIVLVV 84 (487)
Q Consensus 50 ~l~~~dvlv~apTGsGKTl~~--~lp~l~~~~~~lvl 84 (487)
+..+++++++++||||||... ++..+....+++++
T Consensus 157 v~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~ti 193 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALREIPAIERLITV 193 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEe
Confidence 346789999999999999642 23333334555554
No 425
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.33 E-value=0.33 Score=49.74 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=24.7
Q ss_pred CcHHHHHHHHHHHcCCC--EEEEcCCCchhhHH
Q 011387 39 FRDKQLDAIQAVLSGRD--CFCLMPTGGGKSMC 69 (487)
Q Consensus 39 ~~~~Q~~~i~~~l~~~d--vlv~apTGsGKTl~ 69 (487)
+.+.|.+.+..++.... ++|.+|||||||..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 57888888888776643 57889999999975
No 426
>PRK09087 hypothetical protein; Validated
Probab=90.22 E-value=2.7 Score=39.14 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
..+++.+|+|+|||...
T Consensus 45 ~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 44899999999999754
No 427
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=90.17 E-value=3.6 Score=44.76 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=15.9
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (487)
+.+++.+|+|+|||.....
T Consensus 186 ~gill~G~~G~GKt~~~~~ 204 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKA 204 (644)
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 5699999999999986543
No 428
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.14 E-value=1.2 Score=43.77 Aligned_cols=42 Identities=21% Similarity=0.208 Sum_probs=26.2
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCC
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~ 204 (487)
+..++++||||+.+.. .+...+.+.....|....+++++..+
T Consensus 108 ~~~kviiidead~mt~------~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 108 GGYKVVIIDEADKLTE------DAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred CCceEEEeCcHHHHhH------HHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 5688999999999865 22344555555555444455555433
No 429
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.01 E-value=2.2 Score=48.04 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
.+.++.+|+|.|||....
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 588999999999997653
No 430
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.01 E-value=0.69 Score=45.75 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
..+++.+|+|+|||....
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 479999999999998654
No 431
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.01 E-value=1.6 Score=42.60 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
.++++.+|+|+|||...
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999754
No 432
>PRK04328 hypothetical protein; Provisional
Probab=89.98 E-value=0.2 Score=47.40 Aligned_cols=50 Identities=18% Similarity=0.049 Sum_probs=31.5
Q ss_pred CCCEEEEcCCCchhhH-HHH--HhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 011387 53 GRDCFCLMPTGGGKSM-CYQ--IPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl-~~~--lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~ 103 (487)
|.-+++.+++|+|||. +.+ .-.+..+..+++++ +-+-..+..+.++++|.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 4567899999999985 333 23455677788876 33333444555555554
No 433
>PF05729 NACHT: NACHT domain
Probab=89.90 E-value=3.9 Score=35.24 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=24.6
Q ss_pred cEEEEeccccccccCCC--ChHHHHHHHHHHHh--CCCCcEEEEecCC
Q 011387 160 NLVAIDEAHCISSWGHD--FRPSYRKLSSLRNY--LPDVPILALTATA 203 (487)
Q Consensus 160 ~~lViDEah~~~~~g~~--f~~~~~~l~~l~~~--~~~~~~i~lSAT~ 203 (487)
-++|+|-.|.+.+.... -......+..+... .+++++++.|.+.
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~ 130 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPR 130 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCC
Confidence 35999999998763321 11222335455554 5567665555443
No 434
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=89.85 E-value=3.5 Score=38.15 Aligned_cols=50 Identities=22% Similarity=0.122 Sum_probs=32.8
Q ss_pred CCCEEEEcCCCchhhHH-HHHh--HhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 011387 53 GRDCFCLMPTGGGKSMC-YQIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~-~~lp--~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~ 103 (487)
|.-+++.+++|+|||.. .++. .+..+..+++++-.. -..+..+.+..++.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~~~~~~ 68 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYAKSKGW 68 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHcCC
Confidence 45678899999999854 3332 345677788877543 34566666666654
No 435
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.71 E-value=3.6 Score=44.24 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=25.7
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCC
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~ 203 (487)
.+..+++||||+|.+..- ....|.+.....|...++++.+|-
T Consensus 125 ~~~~KVvIIdEad~Lt~~------a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTA------AFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred cCCCEEEEEeChhhcCHH------HHHHHHHHHhCCCCCeEEEEEeCC
Confidence 456789999999998652 123444555555544455555553
No 436
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.71 E-value=2.5 Score=44.43 Aligned_cols=57 Identities=14% Similarity=0.057 Sum_probs=34.5
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHH
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~ 70 (487)
+...|.+.+-.+++...|...-=+..=+|-+.+++-.- .-..+++++|+|+||||.+
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~-~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID-APSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC-CCCceEEeCCCCccHHHHH
Confidence 34567777777777777775432222233333332110 1356899999999999865
No 437
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.66 E-value=1.3 Score=44.14 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
+|++..+|+|+|||+.+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 68999999999999875
No 438
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.66 E-value=3 Score=42.69 Aligned_cols=70 Identities=16% Similarity=0.135 Sum_probs=52.3
Q ss_pred CceEEEEecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccccccCCC
Q 011387 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV------AFGMGIDRKDV 327 (487)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~------~~~~GiDip~v 327 (487)
+.=.+|.|+|++.|.++....++ .|+.+...|||.+..++..-++ -...++|||+ +=-.++|+..+
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceee
Confidence 33467788999999888766554 4789999999999888766665 4568999997 22345777788
Q ss_pred cEEE
Q 011387 328 RLVC 331 (487)
Q Consensus 328 ~~VI 331 (487)
++++
T Consensus 372 S~LV 375 (731)
T KOG0339|consen 372 SYLV 375 (731)
T ss_pred eEEE
Confidence 7766
No 439
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.62 E-value=2.2 Score=45.74 Aligned_cols=49 Identities=22% Similarity=0.261 Sum_probs=28.6
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHH
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 210 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~ 210 (487)
.+..+++||||+|.+... ....|.+.....|..-+++|.+|-...+...
T Consensus 117 ~~~~KVvIIdev~~Lt~~------a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN------AFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred cCCceEEEEEChhhCCHH------HHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 345789999999998752 2244555555555433444555544444333
No 440
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=89.51 E-value=3.7 Score=40.49 Aligned_cols=33 Identities=9% Similarity=0.044 Sum_probs=25.2
Q ss_pred CcHHHHHHHHHHHc--C---CCEEEEcCCCchhhHHHH
Q 011387 39 FRDKQLDAIQAVLS--G---RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 39 ~~~~Q~~~i~~~l~--~---~dvlv~apTGsGKTl~~~ 71 (487)
++|+|...+..+.. + +-.++.+|.|.|||..+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH
Confidence 46888888887763 3 357899999999997653
No 441
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.49 E-value=1.1 Score=45.07 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=17.6
Q ss_pred HcCCCEEEEcCCCchhhHHHH
Q 011387 51 LSGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 51 l~~~dvlv~apTGsGKTl~~~ 71 (487)
-.|+.+++++|+|+|||....
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~ 186 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQ 186 (415)
T ss_pred CCCCEEEEECCCCCChhHHHH
Confidence 367889999999999997544
No 442
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=89.48 E-value=3.9 Score=38.43 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=26.7
Q ss_pred CCEEEEcCCCchhhHHHHHhHhcC-CCeEEEeCcHHHHHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQ 94 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~-~~~~lvl~P~~~L~~q~ 94 (487)
++++..+|+|+|||..+ -++.. ....++.+-..+|+...
T Consensus 152 knVLFyGppGTGKTm~A--kalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA--KALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred ceeEEECCCCccHHHHH--HHHhcccCCceEEechHHHHHHH
Confidence 79999999999999854 33333 34455666666666553
No 443
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=89.45 E-value=1.2 Score=44.67 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=17.1
Q ss_pred HcCCCEEEEcCCCchhhHHH
Q 011387 51 LSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 51 l~~~dvlv~apTGsGKTl~~ 70 (487)
-.|+..++.||.|+|||...
T Consensus 167 GkGQR~lIvgppGvGKTTLa 186 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLL 186 (416)
T ss_pred ccCceEEEeCCCCCChhHHH
Confidence 37899999999999999643
No 444
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.29 E-value=0.54 Score=42.30 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=26.6
Q ss_pred CCcHHHHHHHHHHH-cCCCEEEEcCCCchhhHHH
Q 011387 38 QFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l-~~~dvlv~apTGsGKTl~~ 70 (487)
.+.+.|.+.+.... .++.+++.+|||+|||...
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 57788888887655 5678899999999999753
No 445
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.25 E-value=2.4 Score=47.54 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.7
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
+++++.+|+|.|||....
T Consensus 201 ~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAE 218 (821)
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 589999999999998653
No 446
>PRK10867 signal recognition particle protein; Provisional
Probab=89.20 E-value=21 Score=36.71 Aligned_cols=49 Identities=22% Similarity=0.242 Sum_probs=28.0
Q ss_pred EEEEcCCCchhhHHHH-HhH-h-cC-CCeEEEeC--cHHHHHHHHHHHHH-HcCCc
Q 011387 56 CFCLMPTGGGKSMCYQ-IPA-L-AK-PGIVLVVS--PLIALMENQVIGLK-EKGIA 104 (487)
Q Consensus 56 vlv~apTGsGKTl~~~-lp~-l-~~-~~~~lvl~--P~~~L~~q~~~~l~-~~~~~ 104 (487)
+++++++|+|||.... +.. + .. +.+++++. +.+.-+.+|...+. ..+++
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~ 158 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVP 158 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCe
Confidence 5788999999997543 222 2 23 45555554 55655555554443 34444
No 447
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.16 E-value=4.7 Score=42.77 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=36.8
Q ss_pred cccccCCCCChhHHHHHHHHHH--cCCCCCcHHHHHHHHHHH--cCCCEEEEcCCCchhhHHH
Q 011387 12 SQTQKNKPLHEKEALVKLLRWH--FGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~--fg~~~~~~~Q~~~i~~~l--~~~dvlv~apTGsGKTl~~ 70 (487)
.+...|.+.+-.+++.+.|++. |+...+ +.+..+- --+.|++.+|+|+|||+++
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~p-----e~F~r~Gi~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHP-----EKFARFGISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhch-----HHHHHhcCCCCceEEEECCCCcchHHHH
Confidence 4556788888888888888853 222222 2332221 2378999999999999986
No 448
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=89.09 E-value=2.4 Score=41.59 Aligned_cols=47 Identities=21% Similarity=0.157 Sum_probs=31.6
Q ss_pred HHHHHHc-C-----CCEEEEcCCCchhhHHHHHhH---hcCCCeEEEeCcHHHHHH
Q 011387 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALME 92 (487)
Q Consensus 46 ~i~~~l~-~-----~dvlv~apTGsGKTl~~~lp~---l~~~~~~lvl~P~~~L~~ 92 (487)
.++.++. | +-+.+.+|+|+|||...+-.+ ...++.+++|.+--++-.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDP 97 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHH
Confidence 4666666 3 456799999999996544222 244778888887655543
No 449
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=89.09 E-value=2.5 Score=38.28 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=51.4
Q ss_pred CCceEEEEecccchHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-----ccc-ccccCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM-GIDRKD 326 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~-----~~~-GiDip~ 326 (487)
.+.++||.++++..+.+.++.+... ++.+..++|+.+..++.... .+..+|+|+|.. +.. -.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL----KRGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCCChhh
Confidence 5568999999999998887776653 67888899998876554332 267789999952 222 255667
Q ss_pred CcEEEE
Q 011387 327 VRLVCH 332 (487)
Q Consensus 327 v~~VI~ 332 (487)
++++|.
T Consensus 144 l~~lIv 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
Confidence 777763
No 450
>PRK09354 recA recombinase A; Provisional
Probab=89.09 E-value=3 Score=41.39 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=54.7
Q ss_pred HHHHHHc-C-----CCEEEEcCCCchhhHHHHH---hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHH
Q 011387 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (487)
Q Consensus 46 ~i~~~l~-~-----~dvlv~apTGsGKTl~~~l---p~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~ 116 (487)
.++.++. | +-+.+.+|+|+|||...+. .+...++.+++|..--++-.+ .++.+|+..
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~---~a~~lGvdl----------- 112 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YAKKLGVDI----------- 112 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH---HHHHcCCCH-----------
Confidence 4566676 3 4567899999999965432 223457788888766555432 334444321
Q ss_pred HHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEecccccc
Q 011387 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (487)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~ 171 (487)
-++++..|... ...+..+........+++||||=+-.+.
T Consensus 113 --------------d~lli~qp~~~--Eq~l~i~~~li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 113 --------------DNLLVSQPDTG--EQALEIADTLVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred --------------HHeEEecCCCH--HHHHHHHHHHhhcCCCCEEEEeChhhhc
Confidence 12333333211 1122233344445678999999887664
No 451
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=89.08 E-value=1.4 Score=41.64 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=17.6
Q ss_pred HHcCCCEEEEcCCCchhhHHH
Q 011387 50 VLSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 50 ~l~~~dvlv~apTGsGKTl~~ 70 (487)
+-.|+.+++.+|.|+|||...
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 347889999999999999643
No 452
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=89.03 E-value=3.4 Score=38.76 Aligned_cols=89 Identities=15% Similarity=0.213 Sum_probs=65.8
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCC----CcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccC-CCCCCc
Q 011387 282 GISCAAYHAGLNDKARSSVLDDWISSR----KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG-RDQLPS 356 (487)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~----~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRag-R~g~~g 356 (487)
++.+...+++.+.+. -.|.++. ..|+|+=+.++||+-++++.+.....-++..++++|+.=--| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 566667776554432 3344443 789999999999999999999999999998999999764444 666677
Q ss_pred eEEEEEecchHHHHHHHHH
Q 011387 357 KSLLYYGMDDRRRMEFILS 375 (487)
Q Consensus 357 ~~i~~~~~~d~~~~~~i~~ 375 (487)
.|-+|.+++-...+..+.+
T Consensus 185 l~Ri~~~~~l~~~f~~i~~ 203 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAE 203 (239)
T ss_pred ceEEecCHHHHHHHHHHHH
Confidence 7888887776666666654
No 453
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=88.80 E-value=0.7 Score=42.98 Aligned_cols=14 Identities=29% Similarity=0.211 Sum_probs=12.1
Q ss_pred EEEEcCCCchhhHH
Q 011387 56 CFCLMPTGGGKSMC 69 (487)
Q Consensus 56 vlv~apTGsGKTl~ 69 (487)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999974
No 454
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.62 E-value=1.3 Score=46.28 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=54.2
Q ss_pred ceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 011387 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (487)
Q Consensus 259 ~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~ 317 (487)
..+||.+++++-+++..+.|...|+.+..++++.+..++..++....+|+.+++++|+-
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 45899999999999999999999999999999999999999999999999999999974
No 455
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.45 E-value=9.7 Score=40.99 Aligned_cols=55 Identities=11% Similarity=0.013 Sum_probs=36.1
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHH
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~ 70 (487)
-+|++.+--.+..+.|.+..-|..-+|---... .+.....+++.+|+|+|||+.+
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~-plr~~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANC-PLRLRTGILLYGPPGCGKTLLA 718 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhC-CcccccceEEECCCCCcHHHHH
Confidence 678888888888888887755543333111111 1223457999999999999754
No 456
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=88.36 E-value=1.2 Score=51.65 Aligned_cols=78 Identities=13% Similarity=0.177 Sum_probs=58.5
Q ss_pred CCceEEEEecccchHHHHHHHHHhC----CCce---EEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcccc-ccc-cC-C
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAG----GISC---AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM-GID-RK-D 326 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~---~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~-GiD-ip-~ 326 (487)
.+.+++|.++|++-+.++++.+.+. |+.+ ..+||+++..++....+.+.+|..+|||+|+..-. .++ +. +
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~ 199 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPK 199 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCC
Confidence 3567999999999999998888763 4333 46899999999999899999999999999985321 111 12 5
Q ss_pred CcEEEEeC
Q 011387 327 VRLVCHFN 334 (487)
Q Consensus 327 v~~VI~~~ 334 (487)
++++|.-+
T Consensus 200 ~~~iVvDE 207 (1171)
T TIGR01054 200 FDFIFVDD 207 (1171)
T ss_pred CCEEEEeC
Confidence 77776433
No 457
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=88.28 E-value=0.74 Score=49.34 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=56.0
Q ss_pred HHHHhcCCCcEEEEcCccccccccCCCcEE--------EEeCCCCCHHHHHHHHhccCCCCCC---ceEEEEEecchHHH
Q 011387 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLV--------CHFNIPKSMEAFYQESGRAGRDQLP---SKSLLYYGMDDRRR 369 (487)
Q Consensus 301 ~~~f~~g~~~vLVaT~~~~~GiDip~v~~V--------I~~~~p~s~~~y~Qr~GRagR~g~~---g~~i~~~~~~d~~~ 369 (487)
-++|++|+-.|-|-+.+++.||-+..-+.| |-..+|||.+--+|..||+.|.++- ..+.++-...-.++
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 467999999999999999999998765444 4577999999999999999998753 33444433334444
Q ss_pred HHHHHHh
Q 011387 370 MEFILSK 376 (487)
Q Consensus 370 ~~~i~~~ 376 (487)
+..++.+
T Consensus 930 FAS~VAK 936 (1300)
T KOG1513|consen 930 FASIVAK 936 (1300)
T ss_pred HHHHHHH
Confidence 5545443
No 458
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.25 E-value=5.4 Score=39.74 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=13.6
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
..++.||+|+|||...
T Consensus 38 ~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA 53 (355)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4689999999999764
No 459
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.17 E-value=11 Score=35.61 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=46.3
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHc-CCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHH
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~-~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~ 91 (487)
+.....+.+-+.+....|+++....-+.| ++.+..-.+ -+.+++-+|+|+|||+|+-.-+ .+..-..|-+--.+|+
T Consensus 172 pdvty~dvggckeqieklrevve~pll~p--erfv~lgidppkgvllygppgtgktl~arava-nrtdacfirvigselv 248 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLHP--ERFVNLGIDPPKGVLLYGPPGTGKTLCARAVA-NRTDACFIRVIGSELV 248 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccCH--HHHhhcCCCCCCceEEeCCCCCchhHHHHHHh-cccCceEEeehhHHHH
Confidence 44456678888888888888755443433 222222222 3789999999999999963222 2223333333344554
Q ss_pred HH
Q 011387 92 EN 93 (487)
Q Consensus 92 ~q 93 (487)
+.
T Consensus 249 qk 250 (435)
T KOG0729|consen 249 QK 250 (435)
T ss_pred HH
Confidence 43
No 460
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.11 E-value=0.53 Score=45.09 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=25.6
Q ss_pred HcCCCEEEEcCCCchhhHHH--HHhHhcCC-CeEEEeCcHHHH
Q 011387 51 LSGRDCFCLMPTGGGKSMCY--QIPALAKP-GIVLVVSPLIAL 90 (487)
Q Consensus 51 l~~~dvlv~apTGsGKTl~~--~lp~l~~~-~~~lvl~P~~~L 90 (487)
..+.++++.||||||||... ++..+... .+++++-...++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 34678999999999999643 23333344 566666554444
No 461
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.08 E-value=2.3 Score=46.40 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=29.3
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCC
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAA 204 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~ 204 (487)
..=++|+|+.|.+.+---+ ..+..+.+..| +...++.|-+-+
T Consensus 129 ~pl~LVlDDyHli~~~~l~-----~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 129 GPLYLVLDDYHLISDPALH-----EALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred CceEEEeccccccCcccHH-----HHHHHHHHhCCCCeEEEEEeccCC
Confidence 3458999999999863211 56777788777 566777776644
No 462
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=87.91 E-value=3.8 Score=37.71 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=25.1
Q ss_pred HHHHHHc-----CCCEEEEcCCCchhhHHHHHhH---hcCCCeEEEe
Q 011387 46 AIQAVLS-----GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVV 84 (487)
Q Consensus 46 ~i~~~l~-----~~dvlv~apTGsGKTl~~~lp~---l~~~~~~lvl 84 (487)
.++.++. |.-+++.+++|+|||...+--+ ...+..++++
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi 53 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYI 53 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3555554 3457899999999996543222 2346677777
No 463
>PRK07773 replicative DNA helicase; Validated
Probab=87.80 E-value=2.1 Score=48.39 Aligned_cols=145 Identities=19% Similarity=0.150 Sum_probs=63.0
Q ss_pred CEEEEcCCCchhhHHHHHhH----hcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceEEe-cCCCCHHHHHHHHHHHhcC
Q 011387 55 DCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL-SSTQTMQVKTKIYEDLDSG 127 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~lp~----l~~~~~~lvl~P~~~L~~q~~~~l~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 127 (487)
=+++.|++|+|||...+--+ ...+..+++++- -.-..|.+.++.. .++....+ .+.....+...........
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSl-Ems~~ql~~R~~s~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l 297 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSL-EMSKEQLVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARAMGEI 297 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEec-CCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 36778899999997554222 233556777762 2222333444433 22221111 1122222221221111110
Q ss_pred CCcccEEEe-CcccccChhhHHHHHhhhhcCCccEEEEeccccccccCC-CChH-HH----HHHHHHHHhCCCCcEEEEe
Q 011387 128 KPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRP-SY----RKLSSLRNYLPDVPILALT 200 (487)
Q Consensus 128 ~~~~~il~~-tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~-~f~~-~~----~~l~~l~~~~~~~~~i~lS 200 (487)
....+.+. +|. +.-......+.+......++++|||=.+.+..-+. +-|. .+ +.|+.+.+.+ ++|++++|
T Consensus 298 -~~~~i~i~d~~~-~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAkel-~vpvi~ls 374 (886)
T PRK07773 298 -SEAPIFIDDTPN-LTVMEIRAKARRLRQEANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKEL-EVPVVALS 374 (886)
T ss_pred -hcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCcEEEec
Confidence 01222221 121 11112223333333344699999999998864211 1111 11 2233232232 78888887
Q ss_pred cCC
Q 011387 201 ATA 203 (487)
Q Consensus 201 AT~ 203 (487)
-..
T Consensus 375 QLn 377 (886)
T PRK07773 375 QLS 377 (886)
T ss_pred ccC
Confidence 653
No 464
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.68 E-value=5.6 Score=41.94 Aligned_cols=54 Identities=11% Similarity=-0.076 Sum_probs=31.3
Q ss_pred cccCCCCChhHHHHHHHHHHcC-CCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHH
Q 011387 14 TQKNKPLHEKEALVKLLRWHFG-HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg-~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~ 70 (487)
...|.+++-.+..+..|.+... +..|..++.--+ .=-+.+++++|+|+|||..+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv---~PprGvLlHGPPGCGKT~lA 240 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV---RPPRGVLLHGPPGCGKTSLA 240 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC---CCCCceeeeCCCCccHHHHH
Confidence 4456666666666655554332 223333332221 11378999999999999754
No 465
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=87.50 E-value=5.2 Score=33.71 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.4
Q ss_pred EEEEcCCCchhhHHHH
Q 011387 56 CFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 56 vlv~apTGsGKTl~~~ 71 (487)
++++||+|||||....
T Consensus 2 ii~~G~pgsGKSt~a~ 17 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAK 17 (143)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999997653
No 466
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.40 E-value=5.1 Score=37.39 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=25.7
Q ss_pred HHHHHhhhhcCCccEEEEeccccccc------cCCCChHHHHHHHHHHHhC
Q 011387 147 MSKLKKIHSRGLLNLVAIDEAHCISS------WGHDFRPSYRKLSSLRNYL 191 (487)
Q Consensus 147 ~~~l~~~~~~~~l~~lViDEah~~~~------~g~~f~~~~~~l~~l~~~~ 191 (487)
.....+....+..+.+.|||.+.+.. .|.| |..-+.|..+....
T Consensus 237 vrdvfrlakenapsiifideidaiatkrfdaqtgad-revqril~ellnqm 286 (408)
T KOG0727|consen 237 VRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGAD-REVQRILIELLNQM 286 (408)
T ss_pred HHHHHHHHhccCCcEEEeehhhhHhhhhcccccccc-HHHHHHHHHHHHhc
Confidence 33444444445577899999998843 3443 44444555555544
No 467
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.35 E-value=4.4 Score=41.97 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=14.4
Q ss_pred CEEEEcCCCchhhHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (487)
..++.||.|+|||.+..
T Consensus 41 a~Lf~Gp~G~GKtt~A~ 57 (451)
T PRK06305 41 AYLFSGIRGTGKTTLAR 57 (451)
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 47899999999997654
No 468
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=87.26 E-value=2.3 Score=46.03 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=53.2
Q ss_pred CCceEEEEecccchHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cccc-ccccC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGM-GIDRK 325 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~-----~~~~-GiDip 325 (487)
....+||.|+|++-+.++++.+... ++.+..+||+.+.+.+...+ ....+|+|+|+ .+.+ .+++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchh
Confidence 3457899999999999998887652 67888999998776544433 24578999995 3333 36788
Q ss_pred CCcEEEE
Q 011387 326 DVRLVCH 332 (487)
Q Consensus 326 ~v~~VI~ 332 (487)
++++||.
T Consensus 149 ~l~~lVl 155 (629)
T PRK11634 149 KLSGLVL 155 (629)
T ss_pred hceEEEe
Confidence 8888873
No 469
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.22 E-value=1.4 Score=42.17 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=23.7
Q ss_pred CcHHHHHHHHHHHc-C-CCEEEEcCCCchhhHHH
Q 011387 39 FRDKQLDAIQAVLS-G-RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 39 ~~~~Q~~~i~~~l~-~-~dvlv~apTGsGKTl~~ 70 (487)
+.+.|.+.+..++. . .-+++.+|||||||...
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 46678887776654 3 35789999999999753
No 470
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=87.17 E-value=4.5 Score=38.64 Aligned_cols=52 Identities=10% Similarity=0.030 Sum_probs=28.6
Q ss_pred cCCCCChhHHHHHHHHHHcCC--CCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHH
Q 011387 16 KNKPLHEKEALVKLLRWHFGH--AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~--~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~ 70 (487)
.+.+.+-.+.....+++..-. ..|--+++-.| ---+.|++.+++|+|||+.+
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGi---kpPKGVIlyG~PGTGKTLLA 236 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGI---KPPKGVILYGEPGTGKTLLA 236 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC---CCCCeeEEeCCCCCchhHHH
Confidence 344445455555555543332 22222222222 12378999999999999864
No 471
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=87.15 E-value=3.2 Score=38.13 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchhhHH
Q 011387 53 GRDCFCLMPTGGGKSMC 69 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~ 69 (487)
++.+++.||.|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 36788999999999964
No 472
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=87.15 E-value=4.5 Score=37.41 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=21.4
Q ss_pred CCCEEEEcCCCchhhHHHHHhH---hcCCCeEEEeC
Q 011387 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVS 85 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~lp~---l~~~~~~lvl~ 85 (487)
|.-+.+.+++|+|||...+-.+ +..+.+++++.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4567899999999986543222 23456666665
No 473
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=87.13 E-value=5.3 Score=42.13 Aligned_cols=102 Identities=19% Similarity=0.140 Sum_probs=55.4
Q ss_pred CCCEEEEcCCCchhhHHHH---HhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCC
Q 011387 53 GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~---lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (487)
|.-+++.+++|+|||.... .-.+..+..+++++-. +-..+..+.+..+|..... ....+.
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e-~~~~~i~~~~~~~g~~~~~---------------~~~~g~- 335 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE-ESRAQLIRNARSWGIDLEK---------------MEEKGL- 335 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec-CCHHHHHHHHHHcCCChHH---------------HhhcCC-
Confidence 4567889999999996432 2334557788888643 3345555666666543210 001111
Q ss_pred cccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccc
Q 011387 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (487)
Q Consensus 130 ~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~ 172 (487)
..+....|....-...+..+.........+++|||=.--+..
T Consensus 336 -l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 336 -LKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred -ceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 222222232222123344444444445678999999877643
No 474
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=87.11 E-value=3.2 Score=41.11 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=31.9
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHH
Q 011387 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (487)
Q Consensus 159 l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (487)
--++|+|-|+.+-+.+...-+.+.++..+... +.-.+.+|+++.++.
T Consensus 116 ~~~liLDnad~lrD~~a~ll~~l~~L~el~~~--~~i~iils~~~~e~~ 162 (438)
T KOG2543|consen 116 KVFLILDNADALRDMDAILLQCLFRLYELLNE--PTIVIILSAPSCEKQ 162 (438)
T ss_pred eEEEEEcCHHhhhccchHHHHHHHHHHHHhCC--CceEEEEeccccHHH
Confidence 34699999999998776555555555544443 233678899887764
No 475
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=87.05 E-value=4.6 Score=35.71 Aligned_cols=131 Identities=21% Similarity=0.225 Sum_probs=57.2
Q ss_pred EEEEcCCCchhhHHHH---HhHhcCCCeEEEeCcHHH-HHHHHHHHHHHcC-CceEEecCCCCHHHHHHHHHHHhcCCCc
Q 011387 56 CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIA-LMENQVIGLKEKG-IAGEFLSSTQTMQVKTKIYEDLDSGKPS 130 (487)
Q Consensus 56 vlv~apTGsGKTl~~~---lp~l~~~~~~lvl~P~~~-L~~q~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (487)
+.|.-..|=|||.+++ +-++-.+.+++++--.+. --.--...++.++ +.......+......... .+
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~-~~------- 77 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPNVEIERFGKGFVWRMNEEE-ED------- 77 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT--EEEE--TT----GGGHH-HH-------
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcCCcccccCCCcH-HH-------
Confidence 3455678899998876 334455788888876665 2222223333332 111111100000000000 00
Q ss_pred ccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChH
Q 011387 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (487)
Q Consensus 131 ~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (487)
......-+....+....+..+++|+||+=...++| +-+. ..+..+....|.-.=+.+|+--.+.
T Consensus 78 ---------~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~g--ll~~-~~v~~~l~~rp~~~evVlTGR~~~~ 141 (172)
T PF02572_consen 78 ---------RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYG--LLSE-EEVLDLLENRPESLEVVLTGRNAPE 141 (172)
T ss_dssp ---------HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTT--SS-H-HHHHHHHHTS-TT-EEEEE-SS--H
T ss_pred ---------HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCC--CccH-HHHHHHHHcCCCCeEEEEECCCCCH
Confidence 00001122333445556789999999999988877 3333 3444555555655566777765544
No 476
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=86.97 E-value=4 Score=40.38 Aligned_cols=46 Identities=9% Similarity=0.024 Sum_probs=27.5
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHH
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (487)
.+..+++||||||.+... ....|-+.....|+.-+++++++....+
T Consensus 108 ~~~~kvviI~~a~~~~~~------a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS------AANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred ccCceEEEeehHhhhCHH------HHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 456789999999998652 2234444555555444555655543333
No 477
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.90 E-value=5 Score=40.28 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.8
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
.+++.||+|+|||...
T Consensus 41 ~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 41 ALLFCGPRGVGKTTCA 56 (367)
T ss_pred EEEEECCCCCCHHHHH
Confidence 6789999999999654
No 478
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=86.80 E-value=4.5 Score=39.67 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=52.8
Q ss_pred HHHHHHc-C-----CCEEEEcCCCchhhHHHHH---hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHH
Q 011387 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (487)
Q Consensus 46 ~i~~~l~-~-----~dvlv~apTGsGKTl~~~l---p~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~ 116 (487)
.++.++. | .-+.+.+|+|+|||...+- -+...++.+++|..--++-.+ .++.+|+..
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd~----------- 107 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVDI----------- 107 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCCH-----------
Confidence 4566665 3 4567899999999965432 223446778887665444332 233344321
Q ss_pred HHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEecccccc
Q 011387 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (487)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~ 171 (487)
-++++..|... ...+..+........++++|||-+-.+.
T Consensus 108 --------------~~l~v~~p~~~--eq~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 108 --------------DNLLVSQPDTG--EQALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred --------------HHeEEecCCCH--HHHHHHHHHHhhccCCcEEEEcchhhhc
Confidence 12333333211 1122233334445678999999988764
No 479
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=86.79 E-value=0.12 Score=55.72 Aligned_cols=99 Identities=19% Similarity=0.162 Sum_probs=58.1
Q ss_pred EEEEcCCCchhhHHHHHhHhc------------CCCeEEEeCcHHHHHHHHHHHHHHcC----CceEEecCCCCHHHHHH
Q 011387 56 CFCLMPTGGGKSMCYQIPALA------------KPGIVLVVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTK 119 (487)
Q Consensus 56 vlv~apTGsGKTl~~~lp~l~------------~~~~~lvl~P~~~L~~q~~~~l~~~~----~~~~~~~~~~~~~~~~~ 119 (487)
.++.--.|-|||..-+...+. ..+.+++++|+ +++.|+..++.+.. ....+.++ +..
T Consensus 155 gIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g------r~k 227 (674)
T KOG1001|consen 155 GILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG------RTK 227 (674)
T ss_pred ceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc------ccc
Confidence 455668999999765433321 23468888887 67788888884431 22223332 111
Q ss_pred HHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEecccccccc
Q 011387 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (487)
Q Consensus 120 ~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~ 173 (487)
....+ ..++++++|+.++.++.+.. -.+-.+|+||||.+..+
T Consensus 228 d~~el----~~~dVVltTy~il~~~~l~~--------i~w~Riildea~~ikn~ 269 (674)
T KOG1001|consen 228 DKSEL----NSYDVVLTTYDILKNSPLVK--------IKWLRIVLDEAHTIKNK 269 (674)
T ss_pred ccchh----cCCceEEeeHHHhhcccccc--------eeEEEEEeccccccCCc
Confidence 11111 23668888888777522111 12456999999998753
No 480
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=86.74 E-value=2 Score=46.32 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=53.7
Q ss_pred ceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 011387 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (487)
Q Consensus 259 ~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~ 317 (487)
+.++|.++++.-++...+.|++.|+.+..+|++++..++..+.+....|..++++.|+-
T Consensus 54 g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe 112 (591)
T TIGR01389 54 GLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPE 112 (591)
T ss_pred CcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChh
Confidence 45789999999998888999999999999999999999999999999999999998863
No 481
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=86.67 E-value=2.4 Score=44.57 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=24.2
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCC
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~ 203 (487)
+..+++||||||.+... ....|.+.....|..-.++|++|-
T Consensus 116 ~~~KVvIIDEad~Lt~~------A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKE------AFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred CCeEEEEEECcccCCHH------HHHHHHHHHhhcCCceEEEEEECC
Confidence 45789999999998642 223444445555543334444444
No 482
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.50 E-value=4.1 Score=43.91 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=29.7
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHH
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (487)
.+..+++||||+|.+... ....|.+.....|..-++++++|-...+
T Consensus 119 ~~~~KVvIIdea~~Ls~~------a~naLLK~LEepp~~tifIL~tt~~~kI 164 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA------AFNAFLKTLEEPPSYAIFILATTEKHKI 164 (614)
T ss_pred cCCcEEEEEECcccCCHH------HHHHHHHHHhCCCCCeEEEEEeCCchhc
Confidence 445789999999998652 2345555666666555666766644433
No 483
>PRK10436 hypothetical protein; Provisional
Probab=86.43 E-value=1.3 Score=45.78 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=23.2
Q ss_pred CcHHHHHHHHHHHcC--CCEEEEcCCCchhhHH
Q 011387 39 FRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMC 69 (487)
Q Consensus 39 ~~~~Q~~~i~~~l~~--~dvlv~apTGsGKTl~ 69 (487)
+.+.|.+.+..++.. .-+++.+|||||||..
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt 234 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVT 234 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHH
Confidence 556677777766543 4578999999999975
No 484
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=86.37 E-value=1.9 Score=43.63 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=34.4
Q ss_pred ChhHHHHHHHHHHcCCC--CCcHHHHH-----HHHHHHcCCCEEEEcCCCchhhHHHH
Q 011387 21 HEKEALVKLLRWHFGHA--QFRDKQLD-----AIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 21 ~l~~~~~~~l~~~fg~~--~~~~~Q~~-----~i~~~l~~~dvlv~apTGsGKTl~~~ 71 (487)
...+++.+.|-+..|++ .+..-|+- .++.+-.+.|++..+|+|+|||-.|.
T Consensus 170 FT~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 170 FTLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred cCHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 34556777777778885 44442222 12445577899999999999996653
No 485
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.26 E-value=2.2 Score=41.89 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=34.3
Q ss_pred CCcHHHHHHHH-HHHcCCCEEEEcCCCchhhHH--HHHhHhcCCCeEEEeCcHHHH
Q 011387 38 QFRDKQLDAIQ-AVLSGRDCFCLMPTGGGKSMC--YQIPALAKPGIVLVVSPLIAL 90 (487)
Q Consensus 38 ~~~~~Q~~~i~-~~l~~~dvlv~apTGsGKTl~--~~lp~l~~~~~~lvl~P~~~L 90 (487)
.+.+.|..-+. ++..+++++++++||||||.. +++..+-...+.+.+=-+.++
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt~E~ 182 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCchhcEEEEeccccc
Confidence 57777777554 455778999999999999964 233334445555554444333
No 486
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=86.08 E-value=8.6 Score=37.37 Aligned_cols=145 Identities=19% Similarity=0.168 Sum_probs=69.5
Q ss_pred HHHHHHHHHHH-cCCCEEEEcCCCchhhHHHHHhHh-------------cCCCeEEEeCcHH---HHHHHHHHHHHHcCC
Q 011387 41 DKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPAL-------------AKPGIVLVVSPLI---ALMENQVIGLKEKGI 103 (487)
Q Consensus 41 ~~Q~~~i~~~l-~~~dvlv~apTGsGKTl~~~lp~l-------------~~~~~~lvl~P~~---~L~~q~~~~l~~~~~ 103 (487)
..|-+.|+..+ .|-.+++.++.|.|||+..+.-.+ ...+++++|+--. ++....-..+..+|+
T Consensus 76 s~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgL 155 (402)
T COG3598 76 SNSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGL 155 (402)
T ss_pred ccChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCC
Confidence 34555565544 455677889999999976542221 1256777776321 222221122222343
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcc-cccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHH-
Q 011387 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY- 181 (487)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe-~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~- 181 (487)
...- ...+.....++ .+++ -+..|.+..++.+.....+.+++|||-.=.+..-....+...
T Consensus 156 sPad---------vrn~dltd~~G--------aa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~ 218 (402)
T COG3598 156 SPAD---------VRNMDLTDVSG--------AADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQVK 218 (402)
T ss_pred ChHh---------hhheecccccc--------CCCccccccHHHHHHHHHHHHHhCCCeEEEcchhhhcCCccchhHHHH
Confidence 2211 11100000000 1222 223455666666666667789999998766644221112111
Q ss_pred ---HHHHHHHHhCCCCcEEEEecCC
Q 011387 182 ---RKLSSLRNYLPDVPILALTATA 203 (487)
Q Consensus 182 ---~~l~~l~~~~~~~~~i~lSAT~ 203 (487)
.+..++.... ++.++.++-|.
T Consensus 219 ~fi~~~rkla~~l-~caIiy~hHts 242 (402)
T COG3598 219 EFIKKTRKLARNL-ECAIIYIHHTS 242 (402)
T ss_pred HHHHHHHHHHHhc-CCeEEEEeccc
Confidence 1222222222 56677777764
No 487
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=86.07 E-value=0.72 Score=41.98 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=16.7
Q ss_pred EEEEcCCCchhhHHHHHhHhcCCCeEEE
Q 011387 56 CFCLMPTGGGKSMCYQIPALAKPGIVLV 83 (487)
Q Consensus 56 vlv~apTGsGKTl~~~lp~l~~~~~~lv 83 (487)
.++.+|||+|||-..+..+-..+..+|+
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~ 31 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVIS 31 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEE
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEE
Confidence 4788999999998765444444444333
No 488
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=86.04 E-value=3.9 Score=39.23 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=33.2
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC--------CCcEEEEecCCChHHHHHHHH
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--------DVPILALTATAAPKVQKDVME 213 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~--------~~~~i~lSAT~~~~~~~~i~~ 213 (487)
...=+++|+||++.+- .+.+..|.-+...+| +.=+|++|.+....+.+-..+
T Consensus 176 ~C~rslFIFDE~DKmp------~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~ 235 (344)
T KOG2170|consen 176 ACQRSLFIFDEVDKLP------PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALE 235 (344)
T ss_pred hcCCceEEechhhhcC------HhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHH
Confidence 3345689999999983 344455665666555 333688998877665544433
No 489
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=86.03 E-value=7.3 Score=41.55 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=24.6
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCC
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~ 204 (487)
.+..+++||||+|.+... ....|.+.....|..-++++.+|-.
T Consensus 117 ~~~~KVvIIDEa~~Ls~~------a~naLLK~LEepp~~~vfI~~tte~ 159 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNS------AFNALLKTIEEPPPYIVFIFATTEV 159 (563)
T ss_pred cCCCEEEEEEChhhcCHH------HHHHHHHhhccCCCCEEEEEecCCh
Confidence 356789999999998652 2233333444444433445555543
No 490
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.98 E-value=7.2 Score=43.84 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=21.5
Q ss_pred HHHHHHHHHH----cC--CCEEEEcCCCchhhHHH
Q 011387 42 KQLDAIQAVL----SG--RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 42 ~Q~~~i~~~l----~~--~dvlv~apTGsGKTl~~ 70 (487)
.|..-+..+. .+ .++++++|+|+|||...
T Consensus 191 Gr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 191 GRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 3666666554 22 58999999999999764
No 491
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=85.88 E-value=0.68 Score=33.32 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
|...++.+|+|+|||...
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999753
No 492
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=85.86 E-value=10 Score=39.29 Aligned_cols=81 Identities=28% Similarity=0.260 Sum_probs=70.7
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhc
Q 011387 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (487)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~ 156 (487)
++.+++|.+=|+-++++..+-|.+.|+++..+++....-++..+..+++.|. ++++++ ++.|...++.
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~--~DvLVG----------INLLREGLDi 512 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE--FDVLVG----------INLLREGLDL 512 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCC--ccEEEe----------ehhhhccCCC
Confidence 3789999999999999999999999999999999999999999999999987 666655 2355667777
Q ss_pred CCccEEEEecccc
Q 011387 157 GLLNLVAIDEAHC 169 (487)
Q Consensus 157 ~~l~~lViDEah~ 169 (487)
..++++.|=+||.
T Consensus 513 PEVsLVAIlDADK 525 (663)
T COG0556 513 PEVSLVAILDADK 525 (663)
T ss_pred cceeEEEEeecCc
Confidence 7899999989987
No 493
>PF12846 AAA_10: AAA-like domain
Probab=85.54 E-value=0.79 Score=44.29 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=23.9
Q ss_pred CCCEEEEcCCCchhhHHHHHh---HhcCCCeEEEeCcHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLI 88 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~ 88 (487)
+.++++.|+||+|||.....- .+..+..++++=|.-
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g 39 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKG 39 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 467899999999999765422 223466666665543
No 494
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=85.52 E-value=0.85 Score=47.47 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=14.7
Q ss_pred cCCccEEEEeccccccc
Q 011387 156 RGLLNLVAIDEAHCISS 172 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~ 172 (487)
.++.+++||||+|.++.
T Consensus 117 ~~ryKVyiIDEvHMLS~ 133 (515)
T COG2812 117 EGRYKVYIIDEVHMLSK 133 (515)
T ss_pred cccceEEEEecHHhhhH
Confidence 45688999999999986
No 495
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.20 E-value=6.1 Score=44.41 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=13.3
Q ss_pred EEEEcCCCchhhHHH
Q 011387 56 CFCLMPTGGGKSMCY 70 (487)
Q Consensus 56 vlv~apTGsGKTl~~ 70 (487)
+++.+|||+|||...
T Consensus 599 ~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 599 FLLVGPSGVGKTETA 613 (852)
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999765
No 496
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=85.19 E-value=0.93 Score=41.24 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=15.5
Q ss_pred HHcCCCEEEEcCCCchhhHHHH
Q 011387 50 VLSGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 50 ~l~~~dvlv~apTGsGKTl~~~ 71 (487)
+..++++++.+|.|+|||....
T Consensus 19 AaG~h~lLl~GppGtGKTmlA~ 40 (206)
T PF01078_consen 19 AAGGHHLLLIGPPGTGKTMLAR 40 (206)
T ss_dssp HHCC--EEEES-CCCTHHHHHH
T ss_pred HcCCCCeEEECCCCCCHHHHHH
Confidence 3467899999999999997653
No 497
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.10 E-value=2.6 Score=43.51 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCCEEEEcCCCchhhHHH
Q 011387 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 22 l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l--~~~dvlv~apTGsGKTl~~ 70 (487)
|..|.-+.+++.|-..-|-| ++++.+- .-|.+++-+|+|+||||.+
T Consensus 226 Ld~EFs~IFRRAFAsRvFpp---~vie~lGi~HVKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 226 LDKEFSDIFRRAFASRVFPP---EVIEQLGIKHVKGILLYGPPGTGKTLIA 273 (744)
T ss_pred chHHHHHHHHHHHHhhcCCH---HHHHHcCccceeeEEEECCCCCChhHHH
Confidence 55666666666554332322 2222221 1267899999999999875
No 498
>PRK04841 transcriptional regulator MalT; Provisional
Probab=84.99 E-value=14 Score=42.06 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=25.7
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCC
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAA 204 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~ 204 (487)
.--++|||++|.+.+- .....+..+....| +..+|+.|-+.+
T Consensus 121 ~~~~lvlDD~h~~~~~-----~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 121 QPLYLVIDDYHLITNP-----EIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCEEEEEeCcCcCCCh-----HHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 3457999999988531 11235566666666 455656665543
No 499
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=84.63 E-value=0.9 Score=45.58 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=16.7
Q ss_pred CCEEEEcCCCchhhHHHHHh
Q 011387 54 RDCFCLMPTGGGKSMCYQIP 73 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp 73 (487)
-|+++.+|||+|||+..+-.
T Consensus 227 SNvLllGPtGsGKTllaqTL 246 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTL 246 (564)
T ss_pred ccEEEECCCCCchhHHHHHH
Confidence 47999999999999876533
No 500
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=84.55 E-value=1.3 Score=47.68 Aligned_cols=166 Identities=16% Similarity=0.166 Sum_probs=87.1
Q ss_pred CCcHHHHHHHHHHHc--------CC--CEEEEcCCCchh--hHHHHH-h-HhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 011387 38 QFRDKQLDAIQAVLS--------GR--DCFCLMPTGGGK--SMCYQI-P-ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~--------~~--dvlv~apTGsGK--Tl~~~l-p-~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~ 103 (487)
.+...|.+++--..+ |. ..++--..|-|| |.+-++ - -|.-.+++|+++-...|--+-.+.|+..|.
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~DigA 343 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIGA 343 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcCC
Confidence 577788888865432 32 234433445554 544322 1 233467899999998887777777777654
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCccccc-----Chh----hHHHHHhhhhcCCccEEEEecccccccc-
Q 011387 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-----TPG----FMSKLKKIHSRGLLNLVAIDEAHCISSW- 173 (487)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~-----t~~----~~~~l~~~~~~~~l~~lViDEah~~~~~- 173 (487)
....++..... .. .-...-.++...--+++.|.-.+. +.+ ++..+.+-.....=.+||+||||.....
T Consensus 344 ~~I~V~alnK~-KY-akIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~ 421 (1300)
T KOG1513|consen 344 TGIAVHALNKF-KY-AKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLV 421 (1300)
T ss_pred CCccceehhhc-cc-ccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcccc
Confidence 33222211111 00 001111122223346666654221 111 2233332222333468999999986441
Q ss_pred --C-CCChHHHHHHHHHHHhCCCCcEEEEecCCCh
Q 011387 174 --G-HDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (487)
Q Consensus 174 --g-~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~ 205 (487)
+ -.-.+.=..+-.+.+.+|+.+++.-|||-..
T Consensus 422 p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs 456 (1300)
T KOG1513|consen 422 PTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS 456 (1300)
T ss_pred cccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC
Confidence 0 0001111456678889999999999999543
Done!