Query 011387
Match_columns 487
No_of_seqs 302 out of 3030
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 07:05:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1x_A ATP-dependent DNA helic 100.0 9.4E-73 3.2E-77 597.3 42.6 406 17-462 23-435 (591)
2 1oyw_A RECQ helicase, ATP-depe 100.0 6.6E-72 2.3E-76 584.9 42.2 404 15-463 2-408 (523)
3 2db3_A ATP-dependent RNA helic 100.0 6.4E-53 2.2E-57 432.8 35.2 344 13-375 54-418 (434)
4 3sqw_A ATP-dependent RNA helic 100.0 2.2E-51 7.4E-56 436.7 31.4 345 21-379 27-412 (579)
5 2i4i_A ATP-dependent RNA helic 100.0 1.4E-50 4.7E-55 413.5 35.4 348 13-378 13-396 (417)
6 3i5x_A ATP-dependent RNA helic 100.0 6.9E-51 2.4E-55 431.9 32.3 343 22-378 79-462 (563)
7 2j0s_A ATP-dependent RNA helic 100.0 9.1E-50 3.1E-54 406.7 39.2 347 13-379 35-397 (410)
8 1s2m_A Putative ATP-dependent 100.0 5.8E-49 2E-53 399.3 37.0 344 15-379 21-379 (400)
9 1xti_A Probable ATP-dependent 100.0 2.2E-48 7.4E-53 393.7 38.8 343 15-376 8-369 (391)
10 3eiq_A Eukaryotic initiation f 100.0 5.9E-49 2E-53 400.9 34.2 347 14-379 39-401 (414)
11 3fht_A ATP-dependent RNA helic 100.0 1.1E-48 3.8E-53 398.5 34.2 346 11-379 21-394 (412)
12 1hv8_A Putative ATP-dependent 100.0 9.8E-48 3.4E-52 385.1 38.7 341 15-379 6-359 (367)
13 3pey_A ATP-dependent RNA helic 100.0 3E-48 1E-52 392.7 33.0 340 14-377 4-369 (395)
14 2z0m_A 337AA long hypothetical 100.0 4.9E-48 1.7E-52 382.9 31.0 325 22-375 1-332 (337)
15 1fuu_A Yeast initiation factor 100.0 2.5E-49 8.5E-54 400.9 19.2 344 13-377 19-378 (394)
16 3oiy_A Reverse gyrase helicase 100.0 2E-47 6.9E-52 390.0 29.6 331 23-378 7-376 (414)
17 3fmp_B ATP-dependent RNA helic 100.0 1.2E-48 3.9E-53 406.7 14.2 341 13-376 90-458 (479)
18 3fho_A ATP-dependent RNA helic 100.0 8.6E-47 2.9E-51 394.6 13.1 342 17-379 121-485 (508)
19 4a4z_A Antiviral helicase SKI2 100.0 1.2E-44 4.2E-49 402.1 30.8 398 24-474 26-594 (997)
20 4gl2_A Interferon-induced heli 100.0 1.1E-45 3.8E-50 401.8 18.5 320 38-366 7-520 (699)
21 2ykg_A Probable ATP-dependent 100.0 4.8E-45 1.7E-49 396.6 19.3 328 28-373 4-524 (696)
22 4ddu_A Reverse gyrase; topoiso 100.0 3.8E-42 1.3E-46 385.2 31.2 329 25-377 66-502 (1104)
23 4a2p_A RIG-I, retinoic acid in 100.0 2.4E-42 8.1E-47 365.5 26.8 318 35-370 4-513 (556)
24 2va8_A SSO2462, SKI2-type heli 100.0 6.2E-42 2.1E-46 372.8 30.6 325 15-367 8-410 (715)
25 3l9o_A ATP-dependent RNA helic 100.0 1.1E-42 3.9E-47 389.5 25.3 338 16-377 163-610 (1108)
26 2p6r_A Afuhel308 helicase; pro 100.0 3.4E-42 1.2E-46 373.8 26.8 327 17-368 3-391 (702)
27 4a2w_A RIG-I, retinoic acid in 100.0 4.2E-42 1.4E-46 381.9 26.4 317 33-369 243-753 (936)
28 2zj8_A DNA helicase, putative 100.0 8.8E-42 3E-46 371.6 27.8 325 16-368 2-390 (720)
29 3tbk_A RIG-I helicase domain; 100.0 1.6E-41 5.5E-46 358.8 25.7 315 38-372 4-514 (555)
30 2xgj_A ATP-dependent RNA helic 100.0 7E-41 2.4E-45 372.0 31.1 321 31-377 80-512 (1010)
31 1gm5_A RECG; helicase, replica 100.0 7.5E-42 2.6E-46 368.8 21.5 317 22-365 353-697 (780)
32 1wp9_A ATP-dependent RNA helic 100.0 8.9E-40 3.1E-44 339.0 34.4 313 38-369 9-479 (494)
33 4a2q_A RIG-I, retinoic acid in 100.0 1.8E-40 6.2E-45 364.7 30.6 323 30-370 240-754 (797)
34 2eyq_A TRCF, transcription-rep 100.0 5.1E-39 1.8E-43 362.1 37.4 324 17-366 583-923 (1151)
35 1tf5_A Preprotein translocase 100.0 1.5E-39 5E-44 344.8 30.6 318 32-367 78-547 (844)
36 1gku_B Reverse gyrase, TOP-RG; 100.0 8.4E-41 2.9E-45 374.5 18.7 325 24-378 44-467 (1054)
37 4f92_B U5 small nuclear ribonu 100.0 2.5E-39 8.4E-44 374.4 29.5 332 25-377 914-1320(1724)
38 4f92_B U5 small nuclear ribonu 100.0 2.2E-39 7.6E-44 374.8 21.7 328 29-377 69-485 (1724)
39 2jlq_A Serine protease subunit 100.0 1.8E-39 6E-44 334.0 14.6 283 35-364 1-310 (451)
40 2oca_A DAR protein, ATP-depend 100.0 4.8E-39 1.6E-43 336.9 16.7 299 38-363 113-453 (510)
41 2wv9_A Flavivirin protease NS2 100.0 1.9E-39 6.5E-44 346.1 10.7 288 38-374 215-545 (673)
42 2fwr_A DNA repair protein RAD2 100.0 1.5E-38 5.1E-43 329.9 16.2 288 38-361 93-448 (472)
43 2whx_A Serine protease/ntpase/ 100.0 9.8E-39 3.3E-43 338.5 13.6 308 20-375 155-491 (618)
44 1yks_A Genome polyprotein [con 100.0 5.7E-39 2E-43 328.8 11.3 278 49-375 4-312 (440)
45 1nkt_A Preprotein translocase 100.0 5.9E-36 2E-40 316.6 34.3 322 28-367 102-619 (922)
46 2fsf_A Preprotein translocase 100.0 8.4E-37 2.9E-41 322.8 26.5 320 28-367 65-585 (853)
47 2xau_A PRE-mRNA-splicing facto 100.0 8.5E-37 2.9E-41 331.4 21.1 326 14-367 71-445 (773)
48 2z83_A Helicase/nucleoside tri 100.0 6.7E-38 2.3E-42 322.8 10.6 267 48-365 16-313 (459)
49 3o8b_A HCV NS3 protease/helica 100.0 2.7E-37 9.3E-42 324.9 12.5 274 39-369 218-518 (666)
50 3h1t_A Type I site-specific re 100.0 2.2E-35 7.4E-40 314.4 25.5 304 38-363 178-556 (590)
51 2v6i_A RNA helicase; membrane, 100.0 4.8E-36 1.7E-40 306.5 18.3 265 52-363 1-288 (431)
52 3dmq_A RNA polymerase-associat 100.0 2.1E-34 7.1E-39 320.6 27.5 315 38-363 153-611 (968)
53 3rc3_A ATP-dependent RNA helic 100.0 2E-34 6.9E-39 306.5 25.9 288 48-379 150-458 (677)
54 3jux_A Protein translocase sub 100.0 1.7E-31 5.7E-36 276.9 34.0 323 28-367 66-589 (822)
55 1z63_A Helicase of the SNF2/RA 100.0 4E-32 1.4E-36 283.7 26.0 303 37-365 36-453 (500)
56 1z3i_X Similar to RAD54-like; 100.0 2.8E-29 9.5E-34 268.8 33.8 314 38-365 55-528 (644)
57 3mwy_W Chromo domain-containin 100.0 1.4E-29 4.9E-34 277.6 22.9 326 37-376 235-697 (800)
58 1c4o_A DNA nucleotide excision 100.0 2.7E-28 9.3E-33 261.0 28.5 201 160-374 327-559 (664)
59 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 6E-28 2E-32 267.0 20.0 318 23-363 250-707 (1038)
60 2hjv_A ATP-dependent RNA helic 100.0 3.6E-27 1.2E-31 208.3 19.8 152 226-378 4-155 (163)
61 2d7d_A Uvrabc system protein B 100.0 2E-26 6.7E-31 246.5 28.2 170 193-374 386-565 (661)
62 3fe2_A Probable ATP-dependent 99.9 5.5E-27 1.9E-31 221.1 19.6 193 12-224 26-236 (242)
63 2rb4_A ATP-dependent RNA helic 99.9 1.1E-26 3.7E-31 207.8 19.5 151 229-379 5-161 (175)
64 3eaq_A Heat resistant RNA depe 99.9 1.4E-26 4.8E-31 213.5 19.7 139 242-380 15-153 (212)
65 3iuy_A Probable ATP-dependent 99.9 7.2E-27 2.5E-31 218.2 15.9 188 15-222 19-225 (228)
66 1q0u_A Bstdead; DEAD protein, 99.9 1.7E-26 5.9E-31 214.2 17.2 197 15-231 4-217 (219)
67 1fuk_A Eukaryotic initiation f 99.9 1.8E-26 6E-31 204.4 16.4 136 243-378 15-150 (165)
68 3ly5_A ATP-dependent RNA helic 99.9 4.5E-26 1.5E-30 217.3 19.4 183 15-215 52-254 (262)
69 2pl3_A Probable ATP-dependent 99.9 5.5E-26 1.9E-30 213.3 19.7 191 13-224 23-231 (236)
70 1t5i_A C_terminal domain of A 99.9 4.2E-26 1.4E-30 203.2 17.9 135 243-377 16-151 (172)
71 1vec_A ATP-dependent RNA helic 99.9 7.2E-26 2.5E-30 207.8 18.5 188 15-222 3-204 (206)
72 2jgn_A DBX, DDX3, ATP-dependen 99.9 6E-26 2E-30 204.6 17.4 150 228-378 16-166 (185)
73 3ber_A Probable ATP-dependent 99.9 8.4E-26 2.9E-30 213.8 19.2 192 13-224 41-246 (249)
74 2oxc_A Probable ATP-dependent 99.9 5.3E-26 1.8E-30 212.6 17.2 191 13-223 22-226 (230)
75 3bor_A Human initiation factor 99.9 8.5E-26 2.9E-30 212.2 17.3 192 13-223 28-232 (237)
76 1t6n_A Probable ATP-dependent 99.9 4.1E-25 1.4E-29 205.0 20.4 190 15-223 14-218 (220)
77 2p6n_A ATP-dependent RNA helic 99.9 2.7E-25 9.1E-30 201.2 17.7 146 229-376 27-173 (191)
78 2gxq_A Heat resistant RNA depe 99.9 4.1E-25 1.4E-29 202.9 19.1 188 16-223 2-203 (207)
79 1qde_A EIF4A, translation init 99.9 2.2E-25 7.4E-30 207.5 16.7 190 13-223 12-214 (224)
80 3i32_A Heat resistant RNA depe 99.9 4.4E-25 1.5E-29 213.1 19.0 138 243-380 13-150 (300)
81 3fmo_B ATP-dependent RNA helic 99.9 1E-25 3.5E-30 218.9 14.6 189 13-224 90-296 (300)
82 3dkp_A Probable ATP-dependent 99.9 2.4E-25 8.2E-30 210.2 15.6 188 21-225 35-240 (245)
83 1wrb_A DJVLGB; RNA helicase, D 99.9 2.7E-25 9.3E-30 210.9 15.1 194 13-224 21-238 (253)
84 2yjt_D ATP-dependent RNA helic 99.9 4.8E-27 1.6E-31 209.1 0.0 146 231-376 3-148 (170)
85 2ipc_A Preprotein translocase 99.9 6.6E-23 2.3E-27 216.6 28.6 318 27-367 69-700 (997)
86 2vl7_A XPD; helicase, unknown 99.9 4.5E-22 1.6E-26 208.6 21.1 76 34-110 4-83 (540)
87 3crv_A XPD/RAD3 related DNA he 99.8 6.4E-19 2.2E-23 185.3 25.8 315 35-365 1-531 (551)
88 3b6e_A Interferon-induced heli 99.8 3.4E-19 1.2E-23 164.2 10.0 156 34-202 29-216 (216)
89 1z5z_A Helicase of the SNF2/RA 99.8 1.1E-18 3.8E-23 166.3 11.8 123 243-365 95-224 (271)
90 2fz4_A DNA repair protein RAD2 99.8 3.8E-18 1.3E-22 159.7 12.8 139 38-207 93-232 (237)
91 1rif_A DAR protein, DNA helica 99.7 5.4E-18 1.8E-22 163.2 12.2 145 38-207 113-266 (282)
92 4a15_A XPD helicase, ATP-depen 99.7 1E-16 3.4E-21 170.1 20.8 163 195-365 377-584 (620)
93 3llm_A ATP-dependent RNA helic 99.7 4.9E-16 1.7E-20 145.3 14.0 148 38-207 61-222 (235)
94 1w36_D RECD, exodeoxyribonucle 98.5 4.7E-07 1.6E-11 95.8 12.7 78 23-100 134-218 (608)
95 4b3f_X DNA-binding protein smu 98.0 1.5E-05 5E-10 85.1 11.0 72 37-108 188-263 (646)
96 2gk6_A Regulator of nonsense t 97.9 0.00011 3.8E-09 77.9 14.1 70 36-105 178-251 (624)
97 2wjy_A Regulator of nonsense t 97.7 0.00019 6.6E-09 77.9 12.9 69 37-105 355-427 (800)
98 2xzl_A ATP-dependent helicase 97.7 0.00025 8.5E-09 77.1 13.5 69 37-105 359-431 (802)
99 3upu_A ATP-dependent DNA helic 97.6 0.00018 6.1E-09 73.4 9.5 65 34-98 21-94 (459)
100 3e1s_A Exodeoxyribonuclease V, 97.6 0.00032 1.1E-08 73.4 11.1 59 38-96 189-250 (574)
101 3hgt_A HDA1 complex subunit 3; 97.1 0.0016 5.4E-08 62.2 9.4 122 244-370 109-242 (328)
102 3lfu_A DNA helicase II; SF1 he 97.0 0.076 2.6E-06 56.2 22.5 63 37-101 8-77 (647)
103 3vkw_A Replicase large subunit 96.4 0.0052 1.8E-07 61.4 7.4 43 56-100 164-206 (446)
104 3ec2_A DNA replication protein 96.4 0.035 1.2E-06 48.2 11.8 30 41-70 17-55 (180)
105 3te6_A Regulatory protein SIR3 96.2 0.099 3.4E-06 50.0 14.6 18 53-70 45-62 (318)
106 2o0j_A Terminase, DNA packagin 96.0 0.035 1.2E-06 54.6 10.5 63 38-100 163-230 (385)
107 2qby_B CDC6 homolog 3, cell di 95.8 0.055 1.9E-06 53.1 11.6 17 54-70 46-62 (384)
108 2b8t_A Thymidine kinase; deoxy 95.7 0.0045 1.6E-07 56.2 2.9 36 53-88 12-50 (223)
109 3eie_A Vacuolar protein sortin 95.5 0.042 1.4E-06 52.8 9.1 52 13-71 13-69 (322)
110 2chg_A Replication factor C sm 95.5 0.17 5.9E-06 44.7 12.5 17 54-70 39-55 (226)
111 2kjq_A DNAA-related protein; s 95.4 0.045 1.5E-06 46.2 7.7 19 52-70 35-53 (149)
112 3vfd_A Spastin; ATPase, microt 95.3 0.026 8.8E-07 55.9 6.8 31 53-83 148-178 (389)
113 3syl_A Protein CBBX; photosynt 95.2 0.26 8.8E-06 46.6 13.5 17 54-70 68-84 (309)
114 1g5t_A COB(I)alamin adenosyltr 95.1 0.029 9.8E-07 49.5 5.8 131 54-206 29-165 (196)
115 3co5_A Putative two-component 95.0 0.12 3.9E-06 43.1 9.2 20 51-70 25-44 (143)
116 1gm5_A RECG; helicase, replica 95.0 0.054 1.9E-06 58.5 8.7 77 257-333 416-497 (780)
117 1xwi_A SKD1 protein; VPS4B, AA 94.9 0.11 3.6E-06 50.0 9.9 18 54-71 46-63 (322)
118 3cf0_A Transitional endoplasmi 94.9 0.16 5.3E-06 48.2 10.9 54 15-72 12-68 (301)
119 1fnn_A CDC6P, cell division co 94.9 0.21 7.1E-06 48.8 12.2 16 55-70 46-61 (389)
120 2r6a_A DNAB helicase, replicat 94.9 0.051 1.7E-06 55.0 7.7 41 46-86 192-240 (454)
121 1a5t_A Delta prime, HOLB; zinc 94.9 0.13 4.4E-06 49.6 10.3 33 39-71 3-42 (334)
122 3h4m_A Proteasome-activating n 94.9 0.051 1.8E-06 51.0 7.3 55 14-71 13-69 (285)
123 4a1f_A DNAB helicase, replicat 94.8 0.12 4E-06 50.0 9.7 149 46-203 35-206 (338)
124 1l8q_A Chromosomal replication 94.8 0.066 2.3E-06 51.3 7.9 18 53-70 37-54 (324)
125 2zan_A Vacuolar protein sortin 94.8 0.092 3.2E-06 52.9 9.3 18 54-71 168-185 (444)
126 1d2n_A N-ethylmaleimide-sensit 94.7 0.088 3E-06 49.1 8.3 18 54-71 65-82 (272)
127 2zpa_A Uncharacterized protein 94.7 0.084 2.9E-06 55.5 8.8 55 38-92 175-231 (671)
128 2qp9_X Vacuolar protein sortin 94.6 0.083 2.8E-06 51.5 8.4 18 54-71 85-102 (355)
129 2v1u_A Cell division control p 94.6 0.18 6E-06 49.3 10.8 18 53-70 44-61 (387)
130 3b9p_A CG5977-PA, isoform A; A 94.5 0.19 6.5E-06 47.3 10.3 19 53-71 54-72 (297)
131 1sxj_B Activator 1 37 kDa subu 94.4 0.11 3.6E-06 49.5 8.5 16 55-70 44-59 (323)
132 2q6t_A DNAB replication FORK h 94.4 0.064 2.2E-06 54.1 7.1 153 46-202 189-362 (444)
133 2j9r_A Thymidine kinase; TK1, 94.3 0.053 1.8E-06 48.6 5.5 36 54-89 29-67 (214)
134 3bos_A Putative DNA replicatio 94.3 0.08 2.7E-06 47.9 7.0 18 53-70 52-69 (242)
135 2p65_A Hypothetical protein PF 94.3 0.14 4.7E-06 44.1 8.1 18 53-70 43-60 (187)
136 1sxj_A Activator 1 95 kDa subu 94.2 0.1 3.5E-06 53.7 8.3 43 158-204 148-190 (516)
137 2orw_A Thymidine kinase; TMTK, 94.1 0.12 4E-06 45.3 7.3 37 52-88 2-41 (184)
138 1jbk_A CLPB protein; beta barr 94.1 1.1 3.6E-05 38.3 13.7 17 54-70 44-60 (195)
139 3u61_B DNA polymerase accessor 94.1 0.099 3.4E-06 50.1 7.4 14 158-171 105-118 (324)
140 1uaa_A REP helicase, protein ( 94.0 0.038 1.3E-06 59.0 4.7 61 38-100 2-69 (673)
141 2r2a_A Uncharacterized protein 93.9 0.03 1E-06 49.8 3.1 16 56-71 8-23 (199)
142 2qz4_A Paraplegin; AAA+, SPG7, 93.9 0.069 2.4E-06 49.3 5.7 19 53-71 39-57 (262)
143 1pjr_A PCRA; DNA repair, DNA r 93.9 0.058 2E-06 58.0 5.9 62 37-100 10-78 (724)
144 1njg_A DNA polymerase III subu 93.9 0.73 2.5E-05 41.1 12.6 16 55-70 47-62 (250)
145 2dr3_A UPF0273 protein PH0284; 93.9 0.85 2.9E-05 41.2 13.1 50 52-102 22-74 (247)
146 1sxj_D Activator 1 41 kDa subu 93.8 0.66 2.2E-05 44.6 12.9 17 54-70 59-75 (353)
147 1xx6_A Thymidine kinase; NESG, 93.8 0.04 1.4E-06 48.6 3.7 36 53-88 8-46 (191)
148 3oiy_A Reverse gyrase helicase 93.8 0.12 3.9E-06 51.4 7.5 77 256-332 62-145 (414)
149 3u4q_A ATP-dependent helicase/ 93.6 0.082 2.8E-06 60.4 6.7 61 38-100 10-79 (1232)
150 3bh0_A DNAB-like replicative h 93.6 1 3.5E-05 42.9 13.6 41 46-86 57-104 (315)
151 3pvs_A Replication-associated 93.6 0.12 4E-06 52.2 7.1 19 54-72 51-69 (447)
152 2qgz_A Helicase loader, putati 93.5 0.21 7.1E-06 47.6 8.3 18 53-70 152-169 (308)
153 3d8b_A Fidgetin-like protein 1 93.4 0.19 6.5E-06 48.9 8.2 21 53-73 117-137 (357)
154 2qby_A CDC6 homolog 1, cell di 93.4 0.27 9.2E-06 47.8 9.4 18 53-70 45-62 (386)
155 2chq_A Replication factor C sm 93.4 0.18 6.1E-06 47.8 7.8 16 55-70 40-55 (319)
156 4b4t_J 26S protease regulatory 93.3 0.099 3.4E-06 51.6 5.8 54 13-70 143-199 (405)
157 2w58_A DNAI, primosome compone 93.1 0.38 1.3E-05 42.3 9.0 17 54-70 55-71 (202)
158 2orv_A Thymidine kinase; TP4A 92.9 0.16 5.6E-06 45.9 6.3 36 53-88 19-57 (234)
159 2gno_A DNA polymerase III, gam 92.8 0.21 7.3E-06 47.4 7.3 42 157-204 81-122 (305)
160 3hu3_A Transitional endoplasmi 92.7 0.17 5.8E-06 51.5 6.9 20 54-73 239-258 (489)
161 3t15_A Ribulose bisphosphate c 92.6 0.21 7.1E-06 47.2 6.9 18 54-71 37-54 (293)
162 3pfi_A Holliday junction ATP-d 92.5 0.32 1.1E-05 46.7 8.3 18 54-71 56-73 (338)
163 2z4s_A Chromosomal replication 92.5 0.34 1.2E-05 48.7 8.6 18 54-71 131-148 (440)
164 3bgw_A DNAB-like replicative h 92.4 1.4 4.7E-05 44.2 12.9 41 46-86 186-233 (444)
165 3e2i_A Thymidine kinase; Zn-bi 92.3 0.23 7.9E-06 44.4 6.3 37 53-89 28-67 (219)
166 1lv7_A FTSH; alpha/beta domain 92.3 0.21 7.2E-06 45.9 6.5 18 53-70 45-62 (257)
167 3cf2_A TER ATPase, transitiona 92.3 0.24 8.1E-06 53.4 7.5 71 13-84 472-542 (806)
168 1iqp_A RFCS; clamp loader, ext 92.2 0.59 2E-05 44.3 9.7 43 157-205 109-151 (327)
169 1w5s_A Origin recognition comp 92.2 1.2 4.2E-05 43.6 12.3 17 54-70 51-69 (412)
170 4ddu_A Reverse gyrase; topoiso 92.1 0.24 8.2E-06 55.7 7.6 79 256-334 119-204 (1104)
171 4b4t_L 26S protease subunit RP 92.0 0.13 4.5E-06 51.3 4.9 54 13-70 176-232 (437)
172 4b4t_H 26S protease regulatory 91.9 0.39 1.3E-05 48.1 8.0 55 12-70 203-260 (467)
173 2w0m_A SSO2452; RECA, SSPF, un 91.5 2.5 8.4E-05 37.5 12.7 34 52-85 22-58 (235)
174 4b4t_I 26S protease regulatory 91.5 0.19 6.4E-06 49.9 5.3 54 12-70 176-233 (437)
175 1jr3_A DNA polymerase III subu 91.5 1.5 5E-05 42.4 11.9 43 157-205 118-160 (373)
176 2cvh_A DNA repair and recombin 91.4 0.2 6.9E-06 44.6 5.0 33 53-85 20-52 (220)
177 4b4t_M 26S protease regulatory 91.3 0.12 3.9E-06 51.7 3.6 56 12-70 175-232 (434)
178 3kl4_A SRP54, signal recogniti 91.1 2.2 7.4E-05 42.5 12.6 49 157-207 178-227 (433)
179 1sxj_C Activator 1 40 kDa subu 91.0 1.9 6.6E-05 41.2 12.0 41 158-204 110-150 (340)
180 3cf2_A TER ATPase, transitiona 90.6 0.58 2E-05 50.5 8.3 21 54-74 239-259 (806)
181 1sxj_E Activator 1 40 kDa subu 90.5 1.9 6.5E-05 41.4 11.5 17 55-71 38-54 (354)
182 2eyq_A TRCF, transcription-rep 90.5 0.82 2.8E-05 51.7 9.8 76 256-331 650-730 (1151)
183 4b4t_K 26S protease regulatory 90.2 0.28 9.4E-06 48.9 5.1 54 13-70 167-223 (428)
184 2z43_A DNA repair and recombin 90.2 0.89 3.1E-05 43.4 8.7 42 46-87 95-150 (324)
185 1xp8_A RECA protein, recombina 90.1 2.9 0.0001 40.6 12.3 63 24-86 26-110 (366)
186 1r6b_X CLPA protein; AAA+, N-t 89.9 0.61 2.1E-05 50.3 8.0 18 53-70 207-224 (758)
187 1n0w_A DNA repair protein RAD5 89.9 2.4 8.1E-05 38.0 11.0 19 53-71 24-42 (243)
188 1u94_A RECA protein, recombina 89.8 2 6.7E-05 41.7 10.8 64 23-86 14-99 (356)
189 2zr9_A Protein RECA, recombina 89.7 2.1 7E-05 41.4 10.8 42 45-86 47-97 (349)
190 3ber_A Probable ATP-dependent 89.5 1.6 5.6E-05 39.7 9.6 72 257-332 110-192 (249)
191 1w4r_A Thymidine kinase; type 89.4 0.49 1.7E-05 41.5 5.5 35 53-87 20-57 (195)
192 3dm5_A SRP54, signal recogniti 89.4 3.6 0.00012 41.0 12.5 46 55-100 102-152 (443)
193 1t6n_A Probable ATP-dependent 89.2 1.2 4.2E-05 39.4 8.3 72 258-332 82-164 (220)
194 1oyw_A RECQ helicase, ATP-depe 89.1 0.73 2.5E-05 47.3 7.5 59 258-316 65-123 (523)
195 1ixz_A ATP-dependent metallopr 89.0 0.9 3.1E-05 41.5 7.4 55 13-71 11-67 (254)
196 2rb4_A ATP-dependent RNA helic 88.9 1.5 5E-05 37.5 8.3 79 57-138 12-92 (175)
197 1v5w_A DMC1, meiotic recombina 88.9 0.57 2E-05 45.2 6.2 42 46-87 110-165 (343)
198 2hjv_A ATP-dependent RNA helic 88.8 1.6 5.4E-05 36.9 8.3 60 77-138 34-93 (163)
199 2qen_A Walker-type ATPase; unk 88.7 7 0.00024 36.9 14.0 18 53-70 31-48 (350)
200 2v1x_A ATP-dependent DNA helic 88.5 0.7 2.4E-05 48.2 6.9 59 258-316 84-144 (591)
201 2ce7_A Cell division protein F 88.2 0.46 1.6E-05 48.1 5.2 53 13-70 11-66 (476)
202 1cr0_A DNA primase/helicase; R 88.1 6.5 0.00022 36.6 13.0 34 52-85 34-71 (296)
203 3n70_A Transport activator; si 87.9 0.34 1.2E-05 40.2 3.4 20 52-71 23-42 (145)
204 1vma_A Cell division protein F 87.8 5.2 0.00018 37.7 12.0 31 55-85 106-139 (306)
205 3fe2_A Probable ATP-dependent 87.7 1.4 4.8E-05 39.8 7.8 72 257-332 101-182 (242)
206 2p6n_A ATP-dependent RNA helic 87.7 3.8 0.00013 35.6 10.3 72 63-137 39-111 (191)
207 1t5i_A C_terminal domain of A 87.6 2 7E-05 36.6 8.3 60 77-138 30-89 (172)
208 1q57_A DNA primase/helicase; d 87.5 4 0.00014 41.5 11.8 34 53-86 242-279 (503)
209 1nlf_A Regulatory protein REPA 87.2 5.5 0.00019 36.8 11.7 22 50-71 27-48 (279)
210 1qvr_A CLPB protein; coiled co 87.1 1.8 6.1E-05 47.3 9.4 17 54-70 192-208 (854)
211 3cpe_A Terminase, DNA packagin 87.0 1 3.5E-05 47.0 7.1 63 38-100 163-230 (592)
212 1fuk_A Eukaryotic initiation f 86.9 1.9 6.4E-05 36.4 7.6 60 77-138 29-88 (165)
213 3eaq_A Heat resistant RNA depe 86.7 2.1 7.3E-05 37.9 8.2 62 76-139 29-90 (212)
214 3hws_A ATP-dependent CLP prote 86.5 2.1 7.1E-05 41.5 8.7 23 52-74 50-72 (363)
215 2zts_A Putative uncharacterize 86.5 0.1 3.6E-06 47.5 -0.7 56 147-203 124-182 (251)
216 2oxc_A Probable ATP-dependent 86.4 1.2 4.2E-05 39.9 6.5 70 257-331 91-171 (230)
217 2ehv_A Hypothetical protein PH 86.1 0.98 3.4E-05 40.8 5.8 20 52-71 29-48 (251)
218 2dhr_A FTSH; AAA+ protein, hex 85.8 1.4 4.8E-05 44.8 7.1 54 13-71 26-82 (499)
219 1ypw_A Transitional endoplasmi 85.0 1.5 5.1E-05 47.6 7.3 20 53-72 238-257 (806)
220 2jgn_A DBX, DDX3, ATP-dependen 84.4 2.2 7.4E-05 36.9 6.9 73 63-137 29-103 (185)
221 3cmu_A Protein RECA, recombina 84.0 2.9 0.0001 49.5 9.5 42 46-87 1414-1464(2050)
222 3iuy_A Probable ATP-dependent 83.9 2.1 7.3E-05 38.1 6.9 72 257-332 93-173 (228)
223 2i1q_A DNA repair and recombin 83.9 2.9 9.9E-05 39.6 8.2 25 46-70 86-115 (322)
224 1e9r_A Conjugal transfer prote 83.5 0.67 2.3E-05 46.3 3.5 41 52-92 52-95 (437)
225 1sky_E F1-ATPase, F1-ATP synth 83.0 5.4 0.00018 40.0 9.8 26 45-70 140-168 (473)
226 2gxq_A Heat resistant RNA depe 82.5 3.1 0.00011 36.2 7.3 72 257-332 71-150 (207)
227 1vec_A ATP-dependent RNA helic 82.2 3.4 0.00012 35.9 7.4 72 257-332 70-152 (206)
228 3b85_A Phosphate starvation-in 82.2 1.6 5.4E-05 38.8 5.1 31 40-70 9-39 (208)
229 3cmw_A Protein RECA, recombina 82.0 5.4 0.00019 46.5 10.6 37 324-360 1079-1117(1706)
230 3hr8_A Protein RECA; alpha and 81.6 6 0.00021 38.2 9.4 43 45-87 47-98 (356)
231 1ofh_A ATP-dependent HSL prote 81.5 2.7 9.4E-05 39.2 6.9 19 53-71 50-68 (310)
232 1qvr_A CLPB protein; coiled co 81.2 2.1 7E-05 46.9 6.6 16 55-70 590-605 (854)
233 2r8r_A Sensor protein; KDPD, P 80.8 11 0.00039 33.7 10.2 16 55-70 8-23 (228)
234 3ly5_A ATP-dependent RNA helic 80.6 7.7 0.00026 35.4 9.5 72 257-332 125-207 (262)
235 3bor_A Human initiation factor 80.0 2.7 9.2E-05 37.8 6.1 73 257-332 97-179 (237)
236 2r44_A Uncharacterized protein 79.6 2 6.9E-05 40.9 5.3 24 48-71 41-64 (331)
237 3i32_A Heat resistant RNA depe 79.3 6.8 0.00023 36.8 8.8 61 77-139 27-87 (300)
238 3nbx_X ATPase RAVA; AAA+ ATPas 79.3 2 6.8E-05 43.7 5.3 29 44-72 32-60 (500)
239 3cmu_A Protein RECA, recombina 79.0 13 0.00044 44.2 12.4 42 45-86 369-419 (2050)
240 2pl3_A Probable ATP-dependent 78.9 4.6 0.00016 36.0 7.3 70 257-331 96-176 (236)
241 1wrb_A DJVLGB; RNA helicase, D 78.8 5.3 0.00018 36.1 7.7 71 258-332 100-180 (253)
242 3a8t_A Adenylate isopentenyltr 78.2 1.4 4.9E-05 42.2 3.6 17 54-70 41-57 (339)
243 3lda_A DNA repair protein RAD5 78.2 12 0.00042 36.7 10.5 33 54-86 179-220 (400)
244 1qde_A EIF4A, translation init 78.1 2 6.8E-05 38.1 4.5 71 257-332 81-161 (224)
245 2x8a_A Nuclear valosin-contain 78.0 1 3.6E-05 41.8 2.6 55 13-71 5-62 (274)
246 2yhs_A FTSY, cell division pro 77.8 17 0.0006 36.6 11.6 30 55-84 295-327 (503)
247 2i4i_A ATP-dependent RNA helic 77.7 9 0.00031 37.3 9.6 60 77-138 275-334 (417)
248 2px0_A Flagellar biosynthesis 77.5 20 0.00067 33.5 11.4 19 53-71 105-123 (296)
249 3gk5_A Uncharacterized rhodane 77.0 2.3 7.8E-05 33.1 4.0 38 257-294 54-91 (108)
250 2oap_1 GSPE-2, type II secreti 76.9 2.2 7.5E-05 43.5 4.8 31 39-69 245-276 (511)
251 1p9r_A General secretion pathw 76.4 1.9 6.4E-05 42.8 4.0 31 39-69 151-183 (418)
252 3hjh_A Transcription-repair-co 76.2 3.6 0.00012 41.5 6.2 50 52-101 13-62 (483)
253 3exa_A TRNA delta(2)-isopenten 75.8 1.6 5.6E-05 41.3 3.2 17 54-70 4-20 (322)
254 1wp9_A ATP-dependent RNA helic 75.1 6.5 0.00022 38.9 7.8 71 257-332 51-131 (494)
255 3eme_A Rhodanese-like domain p 74.9 2.3 7.8E-05 32.7 3.4 37 257-293 55-91 (103)
256 1kgd_A CASK, peripheral plasma 74.6 1.8 6.2E-05 37.1 3.1 19 52-70 4-22 (180)
257 3foj_A Uncharacterized protein 74.5 1.8 6.2E-05 33.1 2.7 37 257-293 55-91 (100)
258 2bjv_A PSP operon transcriptio 74.5 1.9 6.7E-05 39.5 3.4 20 52-71 28-47 (265)
259 3io5_A Recombination and repai 74.1 7.7 0.00026 36.8 7.4 36 55-90 30-70 (333)
260 3foz_A TRNA delta(2)-isopenten 73.8 2 7E-05 40.5 3.4 16 55-70 12-27 (316)
261 3vaa_A Shikimate kinase, SK; s 73.5 2 6.7E-05 37.6 3.0 20 52-71 24-43 (199)
262 1hv8_A Putative ATP-dependent 73.4 10 0.00034 36.0 8.5 60 77-138 237-296 (367)
263 3fht_A ATP-dependent RNA helic 73.3 9.2 0.00031 37.0 8.3 59 78-138 266-324 (412)
264 2v9p_A Replication protein E1; 73.3 2 6.8E-05 40.6 3.2 34 52-86 125-159 (305)
265 1xti_A Probable ATP-dependent 72.6 11 0.00038 36.2 8.6 60 77-138 249-308 (391)
266 3iwh_A Rhodanese-like domain p 72.5 2.9 9.8E-05 32.4 3.4 36 257-292 55-90 (103)
267 2gza_A Type IV secretion syste 72.5 2.2 7.7E-05 41.3 3.4 21 50-70 172-192 (361)
268 1lvg_A Guanylate kinase, GMP k 72.4 2 6.9E-05 37.6 2.8 19 52-70 3-21 (198)
269 3trf_A Shikimate kinase, SK; a 72.1 2.1 7.3E-05 36.6 2.9 20 53-72 5-24 (185)
270 3pey_A ATP-dependent RNA helic 71.9 10 0.00035 36.4 8.2 59 78-138 243-301 (395)
271 1s2m_A Putative ATP-dependent 71.9 10 0.00036 36.6 8.2 60 77-138 257-316 (400)
272 3nwn_A Kinesin-like protein KI 71.8 2.6 8.8E-05 40.8 3.6 24 46-69 96-121 (359)
273 3tau_A Guanylate kinase, GMP k 71.4 2.3 7.9E-05 37.5 3.0 20 52-71 7-26 (208)
274 2eyu_A Twitching motility prot 71.4 1.9 6.3E-05 39.8 2.4 20 51-70 23-42 (261)
275 2j37_W Signal recognition part 71.2 37 0.0013 34.3 12.2 32 55-86 103-137 (504)
276 2qmh_A HPR kinase/phosphorylas 71.2 1.7 5.9E-05 38.2 2.0 17 53-69 34-50 (205)
277 2p5t_B PEZT; postsegregational 70.6 20 0.00067 32.4 9.3 19 54-72 33-51 (253)
278 1qhx_A CPT, protein (chloramph 70.3 3.4 0.00012 35.0 3.8 20 53-72 3-22 (178)
279 2pt7_A CAG-ALFA; ATPase, prote 70.1 2.5 8.5E-05 40.4 3.1 21 50-70 168-188 (330)
280 4ag6_A VIRB4 ATPase, type IV s 69.9 3 0.0001 40.8 3.8 38 52-89 34-74 (392)
281 1tue_A Replication protein E1; 69.8 6.1 0.00021 34.9 5.2 47 21-70 25-75 (212)
282 4a2p_A RIG-I, retinoic acid in 69.6 6.4 0.00022 40.1 6.4 71 258-332 55-136 (556)
283 2j0s_A ATP-dependent RNA helic 69.5 12 0.0004 36.4 8.1 59 78-138 276-334 (410)
284 3lw7_A Adenylate kinase relate 69.5 2.1 7.1E-05 36.0 2.2 18 55-72 3-20 (179)
285 1um8_A ATP-dependent CLP prote 69.4 3.8 0.00013 39.7 4.4 20 53-72 72-91 (376)
286 3e70_C DPA, signal recognition 69.4 37 0.0013 32.1 11.2 47 159-209 212-259 (328)
287 3tbk_A RIG-I helicase domain; 69.4 4.9 0.00017 40.8 5.4 71 258-332 52-133 (555)
288 3crm_A TRNA delta(2)-isopenten 69.3 3 0.0001 39.7 3.4 16 55-70 7-22 (323)
289 4fcw_A Chaperone protein CLPB; 69.2 2.4 8E-05 39.8 2.7 18 54-71 48-65 (311)
290 1kag_A SKI, shikimate kinase I 69.1 3.1 0.00011 35.1 3.2 20 53-72 4-23 (173)
291 1gvn_B Zeta; postsegregational 68.9 24 0.00082 32.6 9.7 32 55-86 35-66 (287)
292 4a2q_A RIG-I, retinoic acid in 68.9 8.2 0.00028 41.7 7.2 71 258-332 296-377 (797)
293 2ze6_A Isopentenyl transferase 68.6 2.6 9E-05 38.5 2.8 15 56-70 4-18 (253)
294 1bg2_A Kinesin; motor protein, 68.6 3.4 0.00012 39.4 3.6 25 46-70 69-95 (325)
295 1ojl_A Transcriptional regulat 68.3 2.3 7.9E-05 40.1 2.4 20 52-71 24-43 (304)
296 3iij_A Coilin-interacting nucl 68.1 3.4 0.00012 35.2 3.3 20 52-71 10-29 (180)
297 1gku_B Reverse gyrase, TOP-RG; 68.0 6 0.00021 44.2 6.1 74 257-332 98-181 (1054)
298 3ney_A 55 kDa erythrocyte memb 67.8 2.6 8.8E-05 37.0 2.4 19 52-70 18-36 (197)
299 1y63_A LMAJ004144AAA protein; 67.7 3.1 0.00011 35.8 3.0 21 52-72 9-29 (184)
300 1wv9_A Rhodanese homolog TT165 67.6 3.5 0.00012 31.0 2.9 35 259-293 54-88 (94)
301 3tr0_A Guanylate kinase, GMP k 67.6 3.1 0.00011 36.1 3.0 19 52-70 6-24 (205)
302 3g5j_A Putative ATP/GTP bindin 67.6 5.6 0.00019 31.8 4.4 39 257-295 87-127 (134)
303 2j41_A Guanylate kinase; GMP, 67.3 2.8 9.4E-05 36.5 2.6 20 52-71 5-24 (207)
304 2nr8_A Kinesin-like protein KI 67.3 3.7 0.00013 39.7 3.6 24 46-69 95-120 (358)
305 3b6u_A Kinesin-like protein KI 67.2 3.7 0.00013 39.9 3.6 23 47-69 94-118 (372)
306 2qor_A Guanylate kinase; phosp 67.0 2.9 0.0001 36.6 2.7 20 51-70 10-29 (204)
307 1ex7_A Guanylate kinase; subst 67.0 3 0.0001 36.3 2.6 16 54-69 2-17 (186)
308 3gbj_A KIF13B protein; kinesin 66.9 3.9 0.00013 39.5 3.7 24 46-69 84-109 (354)
309 2y65_A Kinesin, kinesin heavy 66.8 3.8 0.00013 39.7 3.6 23 47-69 77-101 (365)
310 1zp6_A Hypothetical protein AT 66.8 2.6 8.8E-05 36.3 2.2 20 52-71 8-27 (191)
311 3dc4_A Kinesin-like protein NO 66.7 3.5 0.00012 39.6 3.3 23 47-69 87-111 (344)
312 2vvg_A Kinesin-2; motor protei 66.7 3.9 0.00013 39.4 3.6 22 48-69 83-106 (350)
313 4a14_A Kinesin, kinesin-like p 66.7 3.8 0.00013 39.4 3.6 23 47-69 76-100 (344)
314 3d3q_A TRNA delta(2)-isopenten 66.6 3.5 0.00012 39.5 3.3 16 55-70 9-24 (340)
315 2ffh_A Protein (FFH); SRP54, s 66.3 46 0.0016 32.8 11.5 40 55-94 100-144 (425)
316 2h58_A Kinesin-like protein KI 66.3 4 0.00014 39.0 3.6 25 45-69 71-97 (330)
317 3a00_A Guanylate kinase, GMP k 66.2 3.7 0.00013 35.3 3.1 17 54-70 2-18 (186)
318 3flh_A Uncharacterized protein 66.2 3 0.0001 33.4 2.3 38 257-294 70-109 (124)
319 3uk6_A RUVB-like 2; hexameric 66.2 2.8 9.7E-05 40.3 2.7 18 54-71 71-88 (368)
320 3nwj_A ATSK2; P loop, shikimat 66.1 4.1 0.00014 37.2 3.5 23 51-73 46-68 (250)
321 1u0j_A DNA replication protein 66.0 5.4 0.00019 36.7 4.3 47 21-71 70-122 (267)
322 1kht_A Adenylate kinase; phosp 65.6 3.5 0.00012 35.2 2.9 19 53-71 3-21 (192)
323 2l82_A Designed protein OR32; 65.6 24 0.00084 27.0 7.1 51 261-311 5-55 (162)
324 1t5c_A CENP-E protein, centrom 65.5 4.2 0.00014 39.1 3.6 25 46-70 69-95 (349)
325 3lre_A Kinesin-like protein KI 65.4 3.8 0.00013 39.5 3.4 23 47-69 98-122 (355)
326 1z6g_A Guanylate kinase; struc 65.4 4 0.00014 36.3 3.3 20 51-70 21-40 (218)
327 3fmo_B ATP-dependent RNA helic 65.4 4 0.00014 38.3 3.4 68 258-332 162-241 (300)
328 1x88_A Kinesin-like protein KI 65.3 3.9 0.00013 39.5 3.4 24 46-69 80-105 (359)
329 2jtq_A Phage shock protein E; 65.1 10 0.00036 27.6 5.1 37 256-293 39-76 (85)
330 2zfi_A Kinesin-like protein KI 65.0 4.3 0.00015 39.4 3.6 24 46-69 81-106 (366)
331 4etp_A Kinesin-like protein KA 64.8 4.4 0.00015 39.9 3.7 25 46-70 132-158 (403)
332 1c9k_A COBU, adenosylcobinamid 64.6 5.1 0.00018 34.5 3.7 31 56-87 2-32 (180)
333 3dkp_A Probable ATP-dependent 64.6 2.2 7.4E-05 38.5 1.4 73 257-332 97-181 (245)
334 1goj_A Kinesin, kinesin heavy 64.6 4 0.00014 39.4 3.3 22 48-69 74-97 (355)
335 2fsx_A RV0390, COG0607: rhodan 64.6 7.6 0.00026 31.9 4.7 37 257-293 79-116 (148)
336 3kb2_A SPBC2 prophage-derived 64.4 3.6 0.00012 34.4 2.7 17 55-71 3-19 (173)
337 1tf7_A KAIC; homohexamer, hexa 64.4 34 0.0011 34.7 10.5 36 52-87 280-318 (525)
338 1ly1_A Polynucleotide kinase; 64.1 3.1 0.00011 35.2 2.2 17 55-71 4-20 (181)
339 1v8k_A Kinesin-like protein KI 64.0 4.2 0.00014 40.0 3.3 24 46-69 146-171 (410)
340 1gmx_A GLPE protein; transfera 64.0 8.2 0.00028 29.7 4.5 38 257-294 57-95 (108)
341 2db3_A ATP-dependent RNA helic 63.8 18 0.00061 35.7 8.1 59 78-138 300-358 (434)
342 3u06_A Protein claret segregat 63.7 4.7 0.00016 39.8 3.6 25 46-70 130-156 (412)
343 2wbe_C Bipolar kinesin KRP-130 63.7 4.3 0.00015 39.5 3.3 22 48-69 94-117 (373)
344 3hix_A ALR3790 protein; rhodan 63.6 4.7 0.00016 31.1 3.0 38 257-294 51-89 (106)
345 2heh_A KIF2C protein; kinesin, 63.6 4.4 0.00015 39.5 3.4 24 46-69 126-151 (387)
346 2fsf_A Preprotein translocase 63.2 19 0.00066 38.7 8.4 68 244-317 100-172 (853)
347 4eun_A Thermoresistant glucoki 63.2 4.3 0.00015 35.3 3.0 20 52-71 28-47 (200)
348 3nhv_A BH2092 protein; alpha-b 63.2 5.4 0.00019 32.8 3.5 37 257-293 71-109 (144)
349 1tf5_A Preprotein translocase 63.1 23 0.00077 38.2 8.9 71 256-332 122-209 (844)
350 3jvv_A Twitching mobility prot 63.1 3 0.0001 40.3 2.1 18 52-69 122-139 (356)
351 1q0u_A Bstdead; DEAD protein, 63.0 3.8 0.00013 36.1 2.7 72 257-332 71-156 (219)
352 1hqc_A RUVB; extended AAA-ATPa 63.0 4.1 0.00014 38.3 3.1 18 54-71 39-56 (324)
353 2lci_A Protein OR36; structura 63.0 44 0.0015 24.8 13.0 107 196-316 3-109 (134)
354 3cm0_A Adenylate kinase; ATP-b 62.9 3.1 0.00011 35.6 2.0 21 52-72 3-23 (186)
355 2ewv_A Twitching motility prot 62.8 3.3 0.00011 40.3 2.4 19 52-70 135-153 (372)
356 4gp7_A Metallophosphoesterase; 62.7 3 0.0001 35.4 1.8 21 52-72 8-28 (171)
357 1knq_A Gluconate kinase; ALFA/ 62.6 3 0.0001 35.3 1.8 19 53-71 8-26 (175)
358 3cob_A Kinesin heavy chain-lik 62.4 4.3 0.00015 39.4 3.0 24 46-69 71-96 (369)
359 1znw_A Guanylate kinase, GMP k 62.4 4.5 0.00015 35.5 3.0 22 49-70 16-37 (207)
360 4akg_A Glutathione S-transfera 62.4 9.6 0.00033 46.7 6.6 50 22-73 890-943 (2695)
361 2d7d_A Uvrabc system protein B 62.3 28 0.00096 36.5 9.6 82 77-170 444-525 (661)
362 2r62_A Cell division protease 62.2 5.2 0.00018 36.5 3.5 18 53-70 44-61 (268)
363 2bdt_A BH3686; alpha-beta prot 62.2 6.3 0.00022 33.7 3.9 18 55-72 4-21 (189)
364 2yjt_D ATP-dependent RNA helic 66.1 1.6 5.6E-05 37.0 0.0 58 78-137 30-87 (170)
365 2xxa_A Signal recognition part 61.8 1.1E+02 0.0037 30.2 13.3 40 55-94 102-147 (433)
366 3vkg_A Dynein heavy chain, cyt 61.8 10 0.00034 47.2 6.6 63 22-86 873-945 (3245)
367 1c4o_A DNA nucleotide excision 61.4 30 0.001 36.4 9.6 81 77-169 438-518 (664)
368 3eph_A TRNA isopentenyltransfe 61.3 3.8 0.00013 40.2 2.5 15 56-70 5-19 (409)
369 3cmw_A Protein RECA, recombina 61.1 10 0.00035 44.2 6.3 97 46-172 1418-1523(1706)
370 1qxn_A SUD, sulfide dehydrogen 61.0 6.4 0.00022 32.0 3.5 38 257-294 81-119 (137)
371 3tb6_A Arabinose metabolism tr 60.9 94 0.0032 27.9 15.9 186 88-284 31-226 (298)
372 2c9o_A RUVB-like 1; hexameric 60.8 4.4 0.00015 40.6 2.9 17 54-70 64-80 (456)
373 2k0z_A Uncharacterized protein 60.6 8.3 0.00029 29.8 4.0 38 256-293 54-91 (110)
374 2owm_A Nckin3-434, related to 60.5 5.7 0.00019 39.6 3.6 22 48-69 130-153 (443)
375 3t0q_A AGR253WP; kinesin, alph 60.5 3.9 0.00013 39.4 2.4 25 46-70 77-103 (349)
376 1s96_A Guanylate kinase, GMP k 60.3 4.2 0.00014 36.3 2.4 21 50-70 13-33 (219)
377 1g8p_A Magnesium-chelatase 38 59.9 5.2 0.00018 38.1 3.2 19 53-71 45-63 (350)
378 3sqw_A ATP-dependent RNA helic 59.7 22 0.00074 36.6 8.1 60 77-138 287-349 (579)
379 1via_A Shikimate kinase; struc 59.6 5.6 0.00019 33.6 3.1 19 54-72 5-23 (175)
380 1f2t_A RAD50 ABC-ATPase; DNA d 59.4 4.4 0.00015 33.6 2.2 16 55-70 25-40 (149)
381 3i5x_A ATP-dependent RNA helic 59.3 22 0.00075 36.3 8.1 60 77-138 338-400 (563)
382 1zuh_A Shikimate kinase; alpha 59.1 5.4 0.00018 33.4 2.8 21 54-74 8-28 (168)
383 3bfn_A Kinesin-like protein KI 58.9 4.6 0.00016 39.4 2.6 30 40-69 76-115 (388)
384 1fuu_A Yeast initiation factor 58.8 16 0.00056 34.9 6.7 71 257-332 88-168 (394)
385 1tq1_A AT5G66040, senescence-a 58.6 6.1 0.00021 31.7 2.9 38 257-294 81-119 (129)
386 3uie_A Adenylyl-sulfate kinase 58.5 4.8 0.00017 35.0 2.5 19 52-70 24-42 (200)
387 1f9v_A Kinesin-like protein KA 58.2 4.3 0.00015 39.0 2.3 23 48-70 78-102 (347)
388 1tev_A UMP-CMP kinase; ploop, 58.1 4.9 0.00017 34.4 2.4 19 53-71 3-21 (196)
389 1g41_A Heat shock protein HSLU 57.8 8.1 0.00028 38.5 4.2 19 53-71 50-68 (444)
390 1in4_A RUVB, holliday junction 57.7 5.7 0.0002 37.8 3.1 17 54-70 52-68 (334)
391 1zd8_A GTP:AMP phosphotransfer 57.7 7.4 0.00025 34.5 3.6 20 53-72 7-26 (227)
392 3lnc_A Guanylate kinase, GMP k 57.5 4.3 0.00015 36.2 2.0 19 52-70 26-44 (231)
393 1iy2_A ATP-dependent metallopr 57.3 8.1 0.00028 35.5 3.9 54 14-71 36-91 (278)
394 3t61_A Gluconokinase; PSI-biol 57.2 5.7 0.0002 34.5 2.7 17 54-70 19-35 (202)
395 3dl0_A Adenylate kinase; phosp 57.0 7.3 0.00025 34.1 3.4 18 55-72 2-19 (216)
396 1cke_A CK, MSSA, protein (cyti 56.7 6 0.0002 34.9 2.8 18 54-71 6-23 (227)
397 2c95_A Adenylate kinase 1; tra 56.6 6 0.0002 33.9 2.8 21 52-72 8-28 (196)
398 3qf7_A RAD50; ABC-ATPase, ATPa 56.6 4.7 0.00016 39.1 2.2 16 55-70 25-40 (365)
399 2rep_A Kinesin-like protein KI 56.6 5.4 0.00018 38.8 2.6 29 41-69 95-132 (376)
400 1xjc_A MOBB protein homolog; s 56.3 15 0.00051 31.2 5.1 15 55-69 6-20 (169)
401 3d1p_A Putative thiosulfate su 56.0 7.5 0.00026 31.5 3.1 37 257-293 90-127 (139)
402 2iyv_A Shikimate kinase, SK; t 56.0 7.4 0.00025 33.1 3.2 19 54-72 3-21 (184)
403 3fb4_A Adenylate kinase; psych 55.8 6.2 0.00021 34.6 2.8 18 55-72 2-19 (216)
404 1e6c_A Shikimate kinase; phosp 55.5 7.4 0.00025 32.6 3.1 19 54-72 3-21 (173)
405 3c8u_A Fructokinase; YP_612366 55.4 5.6 0.00019 34.9 2.3 18 53-70 22-39 (208)
406 2rhm_A Putative kinase; P-loop 55.3 4.9 0.00017 34.4 1.9 18 54-71 6-23 (193)
407 3k1j_A LON protease, ATP-depen 55.2 10 0.00035 39.5 4.7 24 48-71 55-78 (604)
408 3kta_A Chromosome segregation 55.1 5.1 0.00017 34.1 2.0 16 55-70 28-43 (182)
409 2hhg_A Hypothetical protein RP 55.0 6.7 0.00023 31.8 2.6 37 257-293 85-122 (139)
410 3eiq_A Eukaryotic initiation f 54.9 13 0.00045 36.0 5.3 59 78-138 280-338 (414)
411 3pxg_A Negative regulator of g 54.9 6.9 0.00024 39.3 3.2 18 53-70 201-218 (468)
412 3egc_A Putative ribose operon 54.7 1.2E+02 0.004 27.3 11.7 177 89-284 25-211 (291)
413 1nkt_A Preprotein translocase 54.6 32 0.0011 37.3 8.3 72 255-332 149-237 (922)
414 3a4m_A L-seryl-tRNA(SEC) kinas 54.6 10 0.00035 34.5 4.1 18 54-71 5-22 (260)
415 1ye8_A Protein THEP1, hypothet 54.5 7.1 0.00024 33.4 2.8 16 55-70 2-17 (178)
416 3ipz_A Monothiol glutaredoxin- 54.1 59 0.002 24.8 8.0 56 258-313 17-78 (109)
417 1aky_A Adenylate kinase; ATP:A 53.8 7.7 0.00026 34.2 3.1 19 53-71 4-22 (220)
418 1ry6_A Internal kinesin; kines 53.7 8.1 0.00028 37.3 3.3 19 52-70 82-102 (360)
419 3b6e_A Interferon-induced heli 53.6 8.3 0.00028 33.5 3.2 57 257-317 81-141 (216)
420 3asz_A Uridine kinase; cytidin 53.5 6 0.00021 34.5 2.3 18 53-70 6-23 (211)
421 2i3b_A HCR-ntpase, human cance 53.4 8.7 0.0003 33.3 3.2 42 157-203 104-145 (189)
422 1vee_A Proline-rich protein fa 53.3 11 0.00036 30.4 3.6 37 257-293 73-110 (134)
423 2v54_A DTMP kinase, thymidylat 53.3 8 0.00027 33.4 3.1 20 52-71 3-22 (204)
424 1zak_A Adenylate kinase; ATP:A 53.1 7.9 0.00027 34.2 3.0 20 53-72 5-24 (222)
425 2ipc_A Preprotein translocase 53.1 32 0.0011 37.4 7.9 68 244-317 105-177 (997)
426 2bwj_A Adenylate kinase 5; pho 53.0 9.5 0.00032 32.7 3.5 20 52-71 11-30 (199)
427 2l8b_A Protein TRAI, DNA helic 52.6 21 0.00072 30.7 5.4 53 41-93 37-95 (189)
428 1jjv_A Dephospho-COA kinase; P 52.5 7.6 0.00026 33.8 2.7 17 56-72 5-21 (206)
429 4e22_A Cytidylate kinase; P-lo 52.5 8 0.00027 35.1 3.0 21 52-72 26-46 (252)
430 2z0m_A 337AA long hypothetical 52.4 18 0.00063 33.6 5.7 70 258-332 56-135 (337)
431 1nks_A Adenylate kinase; therm 52.3 7.3 0.00025 33.2 2.6 17 55-71 3-19 (194)
432 1qf9_A UMP/CMP kinase, protein 52.3 7.2 0.00025 33.2 2.6 17 55-71 8-24 (194)
433 2plr_A DTMP kinase, probable t 52.0 6.3 0.00022 34.2 2.2 19 52-70 3-21 (213)
434 3sr0_A Adenylate kinase; phosp 52.0 8 0.00027 34.0 2.8 16 56-71 3-18 (206)
435 3f9v_A Minichromosome maintena 52.0 5.6 0.00019 41.4 2.0 16 55-70 329-344 (595)
436 2vhj_A Ntpase P4, P4; non- hyd 51.8 8.8 0.0003 36.4 3.2 19 53-71 123-141 (331)
437 2pez_A Bifunctional 3'-phospho 51.7 7.5 0.00026 32.9 2.5 19 52-70 4-22 (179)
438 1zu4_A FTSY; GTPase, signal re 51.7 1.5E+02 0.0053 27.6 14.8 30 55-84 107-139 (320)
439 2cdn_A Adenylate kinase; phosp 51.5 8.9 0.00031 33.1 3.1 19 54-72 21-39 (201)
440 1j8m_F SRP54, signal recogniti 51.4 82 0.0028 29.1 9.9 31 55-85 100-133 (297)
441 3ilm_A ALR3790 protein; rhodan 51.3 10 0.00034 31.0 3.1 37 257-293 55-92 (141)
442 3tif_A Uncharacterized ABC tra 51.3 7 0.00024 35.2 2.4 19 52-70 30-48 (235)
443 2if2_A Dephospho-COA kinase; a 51.3 7.7 0.00026 33.6 2.6 18 55-72 3-20 (204)
444 3auy_A DNA double-strand break 51.2 6 0.0002 38.4 2.0 16 55-70 27-42 (371)
445 1ukz_A Uridylate kinase; trans 51.1 11 0.00038 32.5 3.7 17 55-71 17-33 (203)
446 3umf_A Adenylate kinase; rossm 51.0 8.5 0.00029 34.2 2.8 18 54-71 30-47 (217)
447 2ius_A DNA translocase FTSK; n 50.9 8.4 0.00029 39.1 3.1 19 52-70 166-184 (512)
448 1m7g_A Adenylylsulfate kinase; 50.7 7.1 0.00024 34.2 2.3 30 40-70 13-42 (211)
449 2qt1_A Nicotinamide riboside k 50.7 7.9 0.00027 33.7 2.6 19 53-71 21-39 (207)
450 3dbi_A Sugar-binding transcrip 50.5 1.5E+02 0.0053 27.2 14.9 178 88-284 79-267 (338)
451 1ak2_A Adenylate kinase isoenz 50.4 9.3 0.00032 34.1 3.1 20 53-72 16-35 (233)
452 2pt5_A Shikimate kinase, SK; a 50.3 9.1 0.00031 31.8 2.8 17 55-71 2-18 (168)
453 1nij_A Hypothetical protein YJ 50.1 11 0.00039 35.5 3.7 31 56-86 7-38 (318)
454 3tlx_A Adenylate kinase 2; str 49.8 8.2 0.00028 34.8 2.6 20 53-72 29-48 (243)
455 2jaq_A Deoxyguanosine kinase; 49.8 9 0.00031 32.9 2.8 17 55-71 2-18 (205)
456 1urh_A 3-mercaptopyruvate sulf 49.7 19 0.00066 33.0 5.2 39 256-294 228-267 (280)
457 2ykg_A Probable ATP-dependent 49.6 19 0.00066 37.8 5.9 70 259-332 62-142 (696)
458 2vli_A Antibiotic resistance p 49.5 8.1 0.00028 32.6 2.4 20 53-72 5-24 (183)
459 2yvu_A Probable adenylyl-sulfa 49.4 8.5 0.00029 32.8 2.5 19 53-71 13-31 (186)
460 3nh6_A ATP-binding cassette SU 49.4 7.9 0.00027 36.5 2.4 19 52-70 79-97 (306)
461 1uf9_A TT1252 protein; P-loop, 49.2 8.7 0.0003 33.1 2.6 20 55-74 10-29 (203)
462 4akg_A Glutathione S-transfera 49.1 13 0.00044 45.7 4.7 21 50-70 1264-1284(2695)
463 3be4_A Adenylate kinase; malar 48.8 9.5 0.00032 33.6 2.8 20 53-72 5-24 (217)
464 4a74_A DNA repair and recombin 48.6 7.8 0.00027 34.1 2.2 19 53-71 25-43 (231)
465 3m6a_A ATP-dependent protease 48.3 12 0.0004 38.4 3.7 19 53-71 108-126 (543)
466 4a2w_A RIG-I, retinoic acid in 48.3 11 0.00039 41.4 3.9 71 258-332 296-377 (936)
467 2bbw_A Adenylate kinase 4, AK4 48.2 9.8 0.00033 34.2 2.8 19 53-71 27-45 (246)
468 2wwf_A Thymidilate kinase, put 48.0 9.7 0.00033 33.1 2.7 19 52-70 9-27 (212)
469 3dmq_A RNA polymerase-associat 47.6 41 0.0014 37.1 8.2 82 77-168 502-584 (968)
470 2f1r_A Molybdopterin-guanine d 47.5 7 0.00024 33.3 1.6 16 55-70 4-19 (171)
471 3qks_A DNA double-strand break 47.4 8.5 0.00029 33.6 2.2 16 55-70 25-40 (203)
472 3tg1_B Dual specificity protei 47.3 12 0.0004 31.2 3.0 36 258-293 93-137 (158)
473 1e4v_A Adenylate kinase; trans 47.0 9.7 0.00033 33.4 2.6 17 55-71 2-18 (214)
474 2pbr_A DTMP kinase, thymidylat 46.9 11 0.00036 32.2 2.7 15 56-70 3-17 (195)
475 2cbz_A Multidrug resistance-as 46.8 10 0.00035 34.1 2.7 19 52-70 30-48 (237)
476 3zvl_A Bifunctional polynucleo 46.5 70 0.0024 31.2 9.0 17 55-71 260-276 (416)
477 2v6i_A RNA helicase; membrane, 46.4 29 0.00098 34.2 6.2 56 78-139 171-226 (431)
478 3pxi_A Negative regulator of g 46.4 15 0.0005 39.4 4.3 19 53-71 201-219 (758)
479 1nn5_A Similar to deoxythymidy 46.4 11 0.00037 32.8 2.8 19 52-70 8-26 (215)
480 2xb4_A Adenylate kinase; ATP-b 46.3 11 0.00037 33.4 2.8 17 56-72 3-19 (223)
481 1sgw_A Putative ABC transporte 46.3 12 0.00041 33.1 3.0 19 52-70 34-52 (214)
482 2z0h_A DTMP kinase, thymidylat 45.9 11 0.00039 32.1 2.8 15 56-70 3-17 (197)
483 2fna_A Conserved hypothetical 45.7 19 0.00065 33.9 4.6 17 54-70 31-47 (357)
484 4h1g_A Maltose binding protein 45.7 13 0.00043 39.6 3.6 25 45-69 453-479 (715)
485 2pcj_A ABC transporter, lipopr 45.4 8.3 0.00028 34.4 1.8 19 52-70 29-47 (224)
486 1svm_A Large T antigen; AAA+ f 45.2 12 0.00042 36.3 3.1 19 52-70 168-186 (377)
487 2grj_A Dephospho-COA kinase; T 45.1 12 0.00041 32.4 2.8 39 55-96 14-52 (192)
488 3mwy_W Chromo domain-containin 45.0 1.7E+02 0.0057 31.3 12.4 130 77-221 571-704 (800)
489 3l9o_A ATP-dependent RNA helic 44.8 15 0.0005 41.3 4.1 64 257-331 226-295 (1108)
490 1pzn_A RAD51, DNA repair and r 44.4 14 0.00049 35.3 3.5 40 46-85 119-172 (349)
491 2ff7_A Alpha-hemolysin translo 44.3 12 0.0004 34.0 2.7 19 52-70 34-52 (247)
492 2pze_A Cystic fibrosis transme 44.2 12 0.00041 33.4 2.8 19 52-70 33-51 (229)
493 3gfo_A Cobalt import ATP-bindi 44.2 12 0.0004 34.7 2.7 19 52-70 33-51 (275)
494 3tqc_A Pantothenate kinase; bi 44.2 16 0.00056 34.5 3.8 15 56-70 95-109 (321)
495 3zyw_A Glutaredoxin-3; metal b 44.2 91 0.0031 23.9 7.6 57 257-313 14-76 (111)
496 1vht_A Dephospho-COA kinase; s 44.1 12 0.00042 32.7 2.8 18 55-72 6-23 (218)
497 3dmn_A Putative DNA helicase; 43.9 1.4E+02 0.0048 24.8 10.5 64 257-335 60-123 (174)
498 1rj9_A FTSY, signal recognitio 43.9 12 0.00043 35.0 2.9 33 53-85 102-137 (304)
499 2ghi_A Transport protein; mult 43.9 12 0.00041 34.2 2.7 19 52-70 45-63 (260)
500 2yan_A Glutaredoxin-3; oxidore 43.9 91 0.0031 23.3 7.6 55 259-313 17-77 (105)
No 1
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=9.4e-73 Score=597.30 Aligned_cols=406 Identities=37% Similarity=0.675 Sum_probs=365.2
Q ss_pred CCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHH
Q 011387 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVI 96 (487)
Q Consensus 17 ~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~ 96 (487)
+..+++++++.+.|++.||+.+|||+|+++|+.+++|+|+++.||||+|||+||++|++...+++|||+|+++|+.|+++
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~ 102 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLM 102 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccCh-hhHHHHHhhhhcCCccEEEEeccccccccCC
Q 011387 97 GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (487)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~-~~~~~l~~~~~~~~l~~lViDEah~~~~~g~ 175 (487)
.++++|+.+..++++.........+..+.......+++|+||+.+.++ .++..+.+......+++|||||||++++||+
T Consensus 103 ~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~ 182 (591)
T 2v1x_A 103 VLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGH 182 (591)
T ss_dssp HHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCT
T ss_pred HHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccccccc
Confidence 999999999999999998888777777755555689999999988764 5666666666778899999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCc-hhhHHHHHHHHHH
Q 011387 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-LDDAYADLCSVLK 254 (487)
Q Consensus 176 ~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~l~ 254 (487)
+|++.|..+..+...+|++|+++||||+++.+..++...+++..+..+..+++++|+.+.+..... ....+..+.++++
T Consensus 183 dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~ 262 (591)
T 2v1x_A 183 DFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLIN 262 (591)
T ss_dssp TCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998887643 3456778888886
Q ss_pred hC-CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEe
Q 011387 255 AN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333 (487)
Q Consensus 255 ~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~ 333 (487)
.. .+.++||||+|++.++.+++.|.+.|+.+..|||+|++++|.++++.|.+|+.+|||||+++++|||+|+|++||||
T Consensus 263 ~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~ 342 (591)
T 2v1x_A 263 GRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHH 342 (591)
T ss_dssp TTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEES
T ss_pred HhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEe
Confidence 53 67899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcccCCCCcchhhHhhhHHHHHHHHHhhhc----ccch
Q 011387 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV----AGKR 409 (487)
Q Consensus 334 ~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~cr 409 (487)
++|+|++.|+||+|||||+|++|.|++||++.|...+..++... ......+.+|+.| ..||
T Consensus 343 ~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~Cr 407 (591)
T 2v1x_A 343 SMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVME---------------NVGQQKLYEMVSYCQNISKCR 407 (591)
T ss_dssp SCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTTS---------------TTHHHHHHHHHHHHTCSSSCH
T ss_pred CCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHhhh---------------hhhHHHHHHHHHHHhcccccH
Confidence 99999999999999999999999999999999998888776431 1234456677776 7899
Q ss_pred HHHHhcccCCCCCCCCcccccccccccccccccCccCCCCCccCCCCCCCCCh
Q 011387 410 FSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPN 462 (487)
Q Consensus 410 r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~c~~~cd~c~~~~ 462 (487)
|+.+++ || ||.+....|+.+||||..+.
T Consensus 408 r~~ll~-----------------------~f--~e~~~~~~c~~~Cd~C~~~~ 435 (591)
T 2v1x_A 408 RVLMAQ-----------------------HF--DEVWNSEACNKMCDNCCKDS 435 (591)
T ss_dssp HHHHHH-----------------------HH--TCCC---CCCSCBHHHHCCC
T ss_pred HHHHHH-----------------------Hc--CCCCCccccCCCCCCCCCCC
Confidence 999999 89 99877778987899998763
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=6.6e-72 Score=584.95 Aligned_cols=404 Identities=40% Similarity=0.692 Sum_probs=365.0
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHH
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQ 94 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~ 94 (487)
..|+.+++++++.+.|++.||+.+|||+|.++|+.+++|+|+++.||||+|||+||++|++...+.+|||+|+++|+.|+
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~ 81 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQ 81 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccC
Q 011387 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (487)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g 174 (487)
++.++.+|+.+..++++............+..+. .+++++||+.+.++.+...+ ....++++||||||++++||
T Consensus 82 ~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~--~~ilv~Tpe~l~~~~~~~~l----~~~~~~~vViDEaH~i~~~g 155 (523)
T 1oyw_A 82 VDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFLEHL----AHWNPVLLAVDEAHCISQWG 155 (523)
T ss_dssp HHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTC--CSEEEECHHHHTSTTHHHHH----TTSCEEEEEESSGGGGCTTS
T ss_pred HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHhChHHHHHH----hhCCCCEEEEeCccccCcCC
Confidence 9999999999999999988877777777666654 88999999988776554433 33679999999999999999
Q ss_pred CCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHHHH
Q 011387 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254 (487)
Q Consensus 175 ~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 254 (487)
++|++.|..+..++..+|+.|++++|||+++.+..++...+++.++.++..+++++++.+.+... .++...+.++++
T Consensus 156 ~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~---~~~~~~l~~~l~ 232 (523)
T 1oyw_A 156 HDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEK---FKPLDQLMRYVQ 232 (523)
T ss_dssp SCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEEC---SSHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeC---CCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988776 366778888888
Q ss_pred hCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeC
Q 011387 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (487)
Q Consensus 255 ~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~ 334 (487)
...+.++||||+|++.++.+++.|++.|+.+..|||+|++++|.++++.|.+|+.+|||||+++++|||+|++++|||++
T Consensus 233 ~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~ 312 (523)
T 1oyw_A 233 EQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (523)
T ss_dssp HTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESS
T ss_pred hcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEEC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcccCCCCcchhhHhhhHHHHHHHHHhhhc---ccchHH
Q 011387 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV---AGKRFS 411 (487)
Q Consensus 335 ~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~crr~ 411 (487)
+|+|.+.|+||+|||||+|++|.|++++++.|...++.++.... .++........+..|+.| ..|||+
T Consensus 313 ~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~~~---------~~~~~~~~~~~l~~m~~~~~~~~crr~ 383 (523)
T 1oyw_A 313 IPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKP---------QGQLQDIERHKLNAMGAFAEAQTCRRL 383 (523)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHTSC---------CSHHHHHHHHHHHHHHHHHTCSSCHHH
T ss_pred CCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhccC---------cHHHHHHHHHHHHHHHHHHhccccHhh
Confidence 99999999999999999999999999999999999988887621 112223455667778777 899999
Q ss_pred HHhcccCCCCCCCCcccccccccccccccccCccCCCCCccCCCCCCCCChh
Q 011387 412 RVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNL 463 (487)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~c~~~cd~c~~~~~ 463 (487)
.+++ || ||... .+|+ .||||..+..
T Consensus 384 ~l~~-----------------------~f--~e~~~-~~c~-~cd~c~~~~~ 408 (523)
T 1oyw_A 384 VLLN-----------------------YF--GEGRQ-EPCG-NCDICLDPPK 408 (523)
T ss_dssp HHHH-----------------------HT--TCCCC-SCCS-CBHHHHSCCC
T ss_pred hhHh-----------------------hc--CCCCC-CCCC-CCCCCCCCcc
Confidence 9999 88 88764 6888 5999987543
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6.4e-53 Score=432.79 Aligned_cols=344 Identities=19% Similarity=0.282 Sum_probs=274.1
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC-----------CCeE
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIV 81 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~-----------~~~~ 81 (487)
+...|..+++++.+.+.|++ +||..|+|+|+++|+.+++|+|+++.||||||||++|++|++.. ++++
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~ 132 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNK-SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV 132 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSE
T ss_pred CcCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccE
Confidence 34567888999999999997 79999999999999999999999999999999999999998743 5689
Q ss_pred EEeCcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhh
Q 011387 82 LVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHS 155 (487)
Q Consensus 82 lvl~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~ 155 (487)
||++||++|+.|+.+.++++ ++....+.++........ .+.. ..++++ +||+.+..+.. ...
T Consensus 133 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~---~~~Ivv------~Tp~~l~~~l~~~~~~ 200 (434)
T 2db3_A 133 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE---CITR---GCHVVI------ATPGRLLDFVDRTFIT 200 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH---HHTT---CCSEEE------ECHHHHHHHHHTTSCC
T ss_pred EEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH---Hhhc---CCCEEE------EChHHHHHHHHhCCcc
Confidence 99999999999999999885 355666666665543322 1221 255654 45555444432 234
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCC---CCCcc
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNL 232 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~~ 232 (487)
...++++|+||||++.++| |++.+..+.......++.++++||||+++.+...... .+.++..+.... ...++
T Consensus 201 l~~~~~lVlDEah~~~~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~--~l~~~~~i~~~~~~~~~~~i 276 (434)
T 2db3_A 201 FEDTRFVVLDEADRMLDMG--FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGE--FLKNYVFVAIGIVGGACSDV 276 (434)
T ss_dssp CTTCCEEEEETHHHHTSTT--THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHT--TCSSCEEEEESSTTCCCTTE
T ss_pred cccCCeEEEccHhhhhccC--cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHH--hccCCEEEEecccccccccc
Confidence 6778999999999999998 7777766544333356889999999999887664443 334555544322 22334
Q ss_pred eEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 011387 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (487)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vL 312 (487)
...+.... ...+...|.+++.....+ +||||+|++.++.+++.|.+.|+.+..+||++++++|.++++.|++|+.+||
T Consensus 277 ~~~~~~~~-~~~k~~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vL 354 (434)
T 2db3_A 277 KQTIYEVN-KYAKRSKLIEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVL 354 (434)
T ss_dssp EEEEEECC-GGGHHHHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEE
T ss_pred ceEEEEeC-cHHHHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEE
Confidence 43333332 346778888888876654 9999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecc-hHHHHHHHHH
Q 011387 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILS 375 (487)
Q Consensus 313 VaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~-d~~~~~~i~~ 375 (487)
|||+++++|||+|++++||+||+|.+.++|+||+||+||.|+.|.+++|++++ |....+.+.+
T Consensus 355 vaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~ 418 (434)
T 2db3_A 355 IATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVK 418 (434)
T ss_dssp EECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHH
T ss_pred EEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999954 5444444443
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.2e-51 Score=436.67 Aligned_cols=345 Identities=17% Similarity=0.233 Sum_probs=267.6
Q ss_pred ChhHHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCCEEEEcCCCchhhHHHHHhHhcC----------CCeEEEeCcHH
Q 011387 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLI 88 (487)
Q Consensus 21 ~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l--~~~dvlv~apTGsGKTl~~~lp~l~~----------~~~~lvl~P~~ 88 (487)
.+++++.++|+. +|+..|||+|.++++.++ .++|+++.||||+|||++|++|++.. +.++|||+|++
T Consensus 27 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr 105 (579)
T 3sqw_A 27 VLDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 105 (579)
T ss_dssp SSCHHHHHHHHT-TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchH
Confidence 388999999987 799999999999999999 78899999999999999999998843 35899999999
Q ss_pred HHHHHHHHHHHHc--------CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH-Hh--hhhcC
Q 011387 89 ALMENQVIGLKEK--------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KK--IHSRG 157 (487)
Q Consensus 89 ~L~~q~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l-~~--~~~~~ 157 (487)
+|+.|+.+.++++ ......+.++...... ...+.... .+++++||+.+ ..+ .+ .....
T Consensus 106 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~~--~~IlV~Tp~~l------~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 106 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKLR--PNIVIATPGRL------IDVLEKYSNKFFR 174 (579)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHHC--CSEEEECHHHH------HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHH---HHHHhcCC--CCEEEECHHHH------HHHHHhccccccc
Confidence 9999999999874 2334444554443332 22222222 56766665544 222 22 33467
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCC-----CCcEEEEecCCChHHHHHHHHHhcCCCCeEEec-C----C
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-----DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-S----F 227 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-----~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~----~ 227 (487)
.++++||||||++++|| |++.+..+.......+ ++++++||||+++.+...+...+.......+.. . .
T Consensus 175 ~~~~lViDEah~l~~~g--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~ 252 (579)
T 3sqw_A 175 FVDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 252 (579)
T ss_dssp TCCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cCCEEEEEChHHhhcCC--CHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccc
Confidence 79999999999999999 8999888776665433 678999999999987664444333222222221 1 1
Q ss_pred CCCcceEEEEeeCchh----hHHHHHHHHHHh-CCCceEEEEecccchHHHHHHHHHhC---CCceEEecCCCCHHHHHH
Q 011387 228 NRPNLFYEVRYKDLLD----DAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSS 299 (487)
Q Consensus 228 ~~~~~~~~v~~~~~~~----~~~~~l~~~l~~-~~~~~~iIf~~s~~~~~~l~~~L~~~---g~~~~~~h~~l~~~~R~~ 299 (487)
....+...+....... ..+..+...+.. ..+.++||||+|++.++.+++.|.+. ++.+..+||+|++++|.+
T Consensus 253 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~ 332 (579)
T 3sqw_A 253 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 332 (579)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred cccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHH
Confidence 1223333333333222 233344444444 46779999999999999999999886 899999999999999999
Q ss_pred HHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhccc
Q 011387 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (487)
Q Consensus 300 ~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (487)
+++.|++|+.+|||||+++++|||+|++++||++++|.+.+.|+||+||+||+|+.|.|++|+.+.|...++.+.+....
T Consensus 333 ~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~ 412 (579)
T 3sqw_A 333 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 412 (579)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred HHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876543
No 5
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-50 Score=413.50 Aligned_cols=348 Identities=20% Similarity=0.291 Sum_probs=275.2
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC---------------
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------------- 77 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~--------------- 77 (487)
....|+++++++.+.+.|+. +||..|+|+|+++++.+++|+|+++.||||+|||++|++|++..
T Consensus 13 ~~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 13 HIESFSDVEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCSSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 34458889999999999997 69999999999999999999999999999999999999998743
Q ss_pred ---------CCeEEEeCcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccCh
Q 011387 78 ---------PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144 (487)
Q Consensus 78 ---------~~~~lvl~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~ 144 (487)
.+++||++|+++|+.|+.+.++++ ++....+.++........ .+.. ..+++++||+
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~---~~~I~v~Tp~----- 160 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLER---GCHLLVATPG----- 160 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHTT---CCSEEEECHH-----
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---HhhC---CCCEEEEChH-----
Confidence 257999999999999999998874 566777777665544322 2221 2566555554
Q ss_pred hhHHHHHh--hhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC--CCcEEEEecCCChHHHHHHHHHhcCCCC
Q 011387 145 GFMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNP 220 (487)
Q Consensus 145 ~~~~~l~~--~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~--~~~~i~lSAT~~~~~~~~i~~~l~~~~~ 220 (487)
.+..+.. ......++++|+||||++.+++ |++.+..+.......+ ..+++++|||+++.+.......+ ..+
T Consensus 161 -~l~~~l~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~ 235 (417)
T 2i4i_A 161 -RLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL--DEY 235 (417)
T ss_dssp -HHHHHHHTTSBCCTTCCEEEESSHHHHHHTT--CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHC--SSC
T ss_pred -HHHHHHHcCCcChhhCcEEEEEChhHhhccC--cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHc--CCC
Confidence 4333322 2345678999999999999988 7776655533212222 57899999999988766544444 344
Q ss_pred eEEec---CCCCCcceEEEEeeCchhhHHHHHHHHHHhC-CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHH
Q 011387 221 LVLKS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 296 (487)
Q Consensus 221 ~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~ 296 (487)
..+.. ....+++...+.... ...+...+.++++.. .+.++||||++++.++.+++.|.+.|+.+..+||++++++
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 314 (417)
T 2i4i_A 236 IFLAVGRVGSTSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 314 (417)
T ss_dssp EEEEEC----CCSSEEEEEEECC-GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHH
T ss_pred EEEEeCCCCCCccCceEEEEEec-cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHH
Confidence 43322 223445555444433 256777888888876 5678999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHh
Q 011387 297 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (487)
Q Consensus 297 R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~ 376 (487)
|.++++.|.+|+.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.|++|+++.|...+..+.+.
T Consensus 315 r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 394 (417)
T 2i4i_A 315 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDL 394 (417)
T ss_dssp HHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887777665
Q ss_pred cc
Q 011387 377 NQ 378 (487)
Q Consensus 377 ~~ 378 (487)
..
T Consensus 395 ~~ 396 (417)
T 2i4i_A 395 LV 396 (417)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=6.9e-51 Score=431.94 Aligned_cols=343 Identities=17% Similarity=0.239 Sum_probs=265.4
Q ss_pred hhHHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCCEEEEcCCCchhhHHHHHhHhcC----------CCeEEEeCcHHH
Q 011387 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLIA 89 (487)
Q Consensus 22 l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l--~~~dvlv~apTGsGKTl~~~lp~l~~----------~~~~lvl~P~~~ 89 (487)
+++++.+.|.+ +|+..|+|+|.++++.++ .++|+++.||||+|||++|++|++.. +.++|||+|+++
T Consensus 79 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHT-TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 78889999986 799999999999999999 67899999999999999999998853 348999999999
Q ss_pred HHHHHHHHHHHc--------CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH-Hh--hhhcCC
Q 011387 90 LMENQVIGLKEK--------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KK--IHSRGL 158 (487)
Q Consensus 90 L~~q~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l-~~--~~~~~~ 158 (487)
|+.|+.+.++++ +.....+.++...... ...+.... .+++++||+.+ ..+ .+ ......
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~--~~Iiv~Tp~~l------~~~l~~~~~~~~~~ 226 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKLR--PNIVIATPGRL------IDVLEKYSNKFFRF 226 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHHC--CSEEEECHHHH------HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHH---HHHHhcCC--CCEEEECcHHH------HHHHHhcccccccc
Confidence 999999999873 2334555555444332 22222222 56666655543 332 21 234677
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHhC-----CCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC-----CC
Q 011387 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-----PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-----FN 228 (487)
Q Consensus 159 l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~-----~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-----~~ 228 (487)
++++||||||++++|| |++.+..+....... +++|+++||||+++.+...+...+.......+... ..
T Consensus 227 ~~~lViDEah~l~~~~--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (563)
T 3i5x_A 227 VDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 304 (563)
T ss_dssp CCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred ceEEEEeCHHHHhccc--hHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccc
Confidence 9999999999999999 899888876665442 37789999999998876644443332222222211 11
Q ss_pred CCcceEEEEeeCchhh----HHHHHHHHHHh-CCCceEEEEecccchHHHHHHHHHhC---CCceEEecCCCCHHHHHHH
Q 011387 229 RPNLFYEVRYKDLLDD----AYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSV 300 (487)
Q Consensus 229 ~~~~~~~v~~~~~~~~----~~~~l~~~l~~-~~~~~~iIf~~s~~~~~~l~~~L~~~---g~~~~~~h~~l~~~~R~~~ 300 (487)
...+...+........ .+..+...+.. ..+.++||||+|++.++.+++.|.+. ++.+..+||+|++++|..+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~ 384 (563)
T 3i5x_A 305 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 384 (563)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred cccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Confidence 2233333333332222 23334444443 46779999999999999999999886 8999999999999999999
Q ss_pred HHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcc
Q 011387 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (487)
Q Consensus 301 ~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (487)
++.|.+|+.+|||||+++++|||+|++++||++++|.+.+.|+||+|||||.|+.|.|++|+.+.|...++.+.+...
T Consensus 385 ~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 385 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887644
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=9.1e-50 Score=406.70 Aligned_cols=347 Identities=19% Similarity=0.323 Sum_probs=278.1
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc------CCCeEEEeCc
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~------~~~~~lvl~P 86 (487)
....|..+++++++.+.|++ +|+.+|+|+|+++++.+++|+|+++.+|||+|||++|++|++. .+.++||++|
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 113 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 113 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECS
T ss_pred CCCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcC
Confidence 34568889999999999997 7999999999999999999999999999999999999999884 3678999999
Q ss_pred HHHHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCCcc
Q 011387 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLN 160 (487)
Q Consensus 87 ~~~L~~q~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l~ 160 (487)
+++|+.|+.+.+++++ +......++......... +..+ .+++++ ||+.+..+.. ......++
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~---~~ivv~------Tp~~l~~~l~~~~~~~~~~~ 181 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK---LDYG---QHVVAG------TPGRVFDMIRRRSLRTRAIK 181 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHH---HHHC---CSEEEE------CHHHHHHHHHTTSSCCTTCC
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH---hhcC---CCEEEc------CHHHHHHHHHhCCccHhhee
Confidence 9999999999998853 556666666555443222 2111 355544 5554433322 23456689
Q ss_pred EEEEeccccccccCCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHhcCCCCeEEec---CCCCCcceEEE
Q 011387 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEV 236 (487)
Q Consensus 161 ~lViDEah~~~~~g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~~~~~v 236 (487)
++|+||||++.+++ |...+ ..+...+ ++.+++++|||+++.....+.. .+.++..+.. ....+++...+
T Consensus 182 ~vViDEah~~~~~~--~~~~~---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 254 (410)
T 2j0s_A 182 MLVLDEADEMLNKG--FKEQI---YDVYRYLPPATQVVLISATLPHEILEMTNK--FMTDPIRILVKRDELTLEGIKQFF 254 (410)
T ss_dssp EEEEETHHHHTSTT--THHHH---HHHHTTSCTTCEEEEEESCCCHHHHTTGGG--TCSSCEEECCCGGGCSCTTEEEEE
T ss_pred EEEEccHHHHHhhh--hHHHH---HHHHHhCccCceEEEEEcCCCHHHHHHHHH--HcCCCEEEEecCccccCCCceEEE
Confidence 99999999999887 55443 4444545 4789999999999876543222 2344444332 22334444444
Q ss_pred EeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 011387 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (487)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~ 316 (487)
........+...+.++++.....++||||++++.++.+++.|.+.|+.+..+||++++++|.++++.|++|+.+|||||+
T Consensus 255 ~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 255 VAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 334 (410)
T ss_dssp EEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG
T ss_pred EEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 44444455788888888887778999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhccc
Q 011387 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (487)
Q Consensus 317 ~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (487)
++++|+|+|++++||++++|.+...|+||+||+||.|++|.|++|+.+.|...++.+.+....
T Consensus 335 ~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 397 (410)
T 2j0s_A 335 VWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 397 (410)
T ss_dssp GGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred hhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999998888776543
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.8e-49 Score=399.34 Aligned_cols=344 Identities=20% Similarity=0.281 Sum_probs=277.5
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc------CCCeEEEeCcHH
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLI 88 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~------~~~~~lvl~P~~ 88 (487)
..|+++++++++.+.|.+ +|+..|+|+|+++++.+++++++++.+|||+|||++|++|++. .+.+++|++|++
T Consensus 21 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 99 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTR 99 (400)
T ss_dssp CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCH
Confidence 468899999999999998 7999999999999999999999999999999999999999875 356899999999
Q ss_pred HHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhhcCCccEE
Q 011387 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNLV 162 (487)
Q Consensus 89 ~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~~~~l~~l 162 (487)
+|+.|+.+.++++ ++......++........ .. ....+++++||+.+ ..+. .......++++
T Consensus 100 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~---~~~~~Ivv~T~~~l------~~~~~~~~~~~~~~~~v 167 (400)
T 1s2m_A 100 ELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---RL---NETVHILVGTPGRV------LDLASRKVADLSDCSLF 167 (400)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---HT---TSCCSEEEECHHHH------HHHHHTTCSCCTTCCEE
T ss_pred HHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---Hh---cCCCCEEEEchHHH------HHHHHhCCcccccCCEE
Confidence 9999999999875 566666666655443211 11 12356766666543 2222 22345678999
Q ss_pred EEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEe--cCCCCCcceEEEEee
Q 011387 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYK 239 (487)
Q Consensus 163 ViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~~v~~~ 239 (487)
|+||||++.+.+ |+. .+..+...++ ..+++++|||+++.....+...+. .+..+. .....+++...+...
T Consensus 168 IiDEaH~~~~~~--~~~---~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 240 (400)
T 1s2m_A 168 IMDEADKMLSRD--FKT---IIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLH--KPYEINLMEELTLKGITQYYAFV 240 (400)
T ss_dssp EEESHHHHSSHH--HHH---HHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCS--SCEEESCCSSCBCTTEEEEEEEC
T ss_pred EEeCchHhhhhc--hHH---HHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcC--CCeEEEeccccccCCceeEEEEe
Confidence 999999987643 333 3444555554 678999999999988776666554 333222 223334444333332
Q ss_pred CchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc
Q 011387 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (487)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~ 319 (487)
. ...+...+..+++...++++||||++++.++.+++.|.+.|+.+..+||+++.++|.++++.|.+|+.+|||||++++
T Consensus 241 ~-~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 319 (400)
T 1s2m_A 241 E-ERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLT 319 (400)
T ss_dssp C-GGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSS
T ss_pred c-hhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc
Confidence 2 246777888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhccc
Q 011387 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (487)
Q Consensus 320 ~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (487)
+|+|+|++++||++++|.+...|+||+||+||.|++|.|++++++.|...++.+.+....
T Consensus 320 ~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 379 (400)
T 1s2m_A 320 RGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGT 379 (400)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred cCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999998888876544
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.2e-48 Score=393.72 Aligned_cols=343 Identities=15% Similarity=0.235 Sum_probs=272.5
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCcHH
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~ 88 (487)
..|+++++++++.+.|++ +|+..|+|+|+++++.+++++++++.+|||+|||++|++|++.. +.++||++|++
T Consensus 8 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 86 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 86 (391)
T ss_dssp -CGGGGCCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCH
Confidence 357888999999999998 79999999999999999999999999999999999999998753 56899999999
Q ss_pred HHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCCccE
Q 011387 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (487)
Q Consensus 89 ~L~~q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l~~ 161 (487)
+|+.|+.+.++++ ++.+..+.++......... +..+. .+++++||+. +..+.. ......+++
T Consensus 87 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~--~~iiv~T~~~------l~~~~~~~~~~~~~~~~ 155 (391)
T 1xti_A 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNC--PHIVVGTPGR------ILALARNKSLNLKHIKH 155 (391)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSC--CSEEEECHHH------HHHHHHTTSSCCTTCSE
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCC--CCEEEECHHH------HHHHHHcCCccccccCE
Confidence 9999999999885 6778888777765543322 22222 4666555554 333322 234567899
Q ss_pred EEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC----CCCCcceEEE
Q 011387 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FNRPNLFYEV 236 (487)
Q Consensus 162 lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~----~~~~~~~~~v 236 (487)
+|+||||++.+|. +|+.. +..+....+ +.+++++|||+++.....+...+. .+..+... ....++...+
T Consensus 156 vViDEaH~~~~~~-~~~~~---~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 229 (391)
T 1xti_A 156 FILDECDKMLEQL-DMRRD---VQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ--DPMEIFVDDETKLTLHGLQQYY 229 (391)
T ss_dssp EEECSHHHHTSSH-HHHHH---HHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCS--SCEEEECCCCCCCCCTTCEEEE
T ss_pred EEEeCHHHHhhcc-chHHH---HHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcC--CCeEEEecCccccCcccceEEE
Confidence 9999999998751 24443 334444444 788999999999887765555443 34333221 1223333333
Q ss_pred EeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 011387 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (487)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~ 316 (487)
... ....+...+.++++...++++||||++++.++.+++.|.+.|+.+..+||+++.++|.++++.|.+|+.+|||||+
T Consensus 230 ~~~-~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 308 (391)
T 1xti_A 230 VKL-KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 308 (391)
T ss_dssp EEC-CGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC
T ss_pred EEc-CchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC
Confidence 322 2356778888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchH-HHHHHHHHh
Q 011387 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-RRMEFILSK 376 (487)
Q Consensus 317 ~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~-~~~~~i~~~ 376 (487)
++++|+|+|++++||+++.|+|...|+||+||+||.|++|.|++++++.+. ..++.+.+.
T Consensus 309 ~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 369 (391)
T 1xti_A 309 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDR 369 (391)
T ss_dssp CCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHH
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987744 445555544
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.9e-49 Score=400.91 Aligned_cols=347 Identities=19% Similarity=0.278 Sum_probs=263.3
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc------CCCeEEEeCcH
Q 011387 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (487)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~------~~~~~lvl~P~ 87 (487)
...|..+++++.+.+.|++ +|+..|+++|+++++.+++|+++++.||||+|||++|++|++. .+.+++|++|+
T Consensus 39 ~~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 117 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPT 117 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred hcCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeCh
Confidence 3567788999999999998 7999999999999999999999999999999999999999875 46789999999
Q ss_pred HHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhhcCCccE
Q 011387 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNL 161 (487)
Q Consensus 88 ~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~~~~l~~ 161 (487)
++|+.|+.+.++++ +.......++...... ...+.... .+++++||+.+ ..+. .......+++
T Consensus 118 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~iiv~T~~~l------~~~l~~~~~~~~~~~~ 186 (414)
T 3eiq_A 118 RELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEA--PHIIVGTPGRV------FDMLNRRYLSPKYIKM 186 (414)
T ss_dssp HHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTC--CSEEEECHHHH------HHHHHHTSSCSTTCCE
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCC--CCEEEECHHHH------HHHHHcCCcccccCcE
Confidence 99999999999885 4555555554443322 22232222 56655555443 3332 2234566899
Q ss_pred EEEeccccccccCCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHhcCCCCeEEec---CCCCCcceEEEE
Q 011387 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVR 237 (487)
Q Consensus 162 lViDEah~~~~~g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~~~~~v~ 237 (487)
+|+||||++.+++ |... +..+...+ ++.+++++|||+++........ .+.++..+.. ....+++.....
T Consensus 187 vViDEah~~~~~~--~~~~---~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (414)
T 3eiq_A 187 FVLDEADEMLSRG--FKDQ---IYDIFQKLNSNTQVVLLSATMPSDVLEVTKK--FMRDPIRILVKKEELTLEGIRQFYI 259 (414)
T ss_dssp EEECSHHHHHHTT--THHH---HHHHHTTSCTTCEEEEECSCCCHHHHHHHTT--TCSSCEEECCCCCCCCTTSCCEEEE
T ss_pred EEEECHHHhhccC--cHHH---HHHHHHhCCCCCeEEEEEEecCHHHHHHHHH--HcCCCEEEEecCCccCCCCceEEEE
Confidence 9999999999887 4433 34444444 5789999999999887664333 2334443322 223334444444
Q ss_pred eeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 011387 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (487)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~ 317 (487)
.......+...+.++++....+++||||++++.++.+++.|.+.++.+..+||++++++|.++++.|.+|+.+|||||++
T Consensus 260 ~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 339 (414)
T 3eiq_A 260 NVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 339 (414)
T ss_dssp ECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS
T ss_pred EeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc
Confidence 44444568888999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhccc
Q 011387 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (487)
Q Consensus 318 ~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (487)
+++|||+|++++||+++.|.+...|+||+||+||.|++|.|++++++.|...++.+.+....
T Consensus 340 ~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 401 (414)
T 3eiq_A 340 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNT 401 (414)
T ss_dssp CC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTC
T ss_pred cccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999988888766543
No 11
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.1e-48 Score=398.51 Aligned_cols=346 Identities=20% Similarity=0.259 Sum_probs=270.9
Q ss_pred CcccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhHhcC------CCeEE
Q 011387 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVL 82 (487)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~--~dvlv~apTGsGKTl~~~lp~l~~------~~~~l 82 (487)
......|+.+++++.+.+.|++ +|+..|+|+|.++++.++++ +++++.||||+|||++|++|++.. +++++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~l 99 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL 99 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred ccccCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEE
Confidence 3455678899999999999998 79999999999999999987 999999999999999999998742 45899
Q ss_pred EeCcHHHHHHHHHHHHHHcC-----CceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH-h--hh
Q 011387 83 VVSPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K--IH 154 (487)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~-~--~~ 154 (487)
|++|+++|+.|+.+.+++++ .......++..... ......+++++| |+.+..+. + ..
T Consensus 100 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ivv~T------~~~l~~~~~~~~~~ 164 (412)
T 3fht_A 100 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGT------PGTVLDWCSKLKFI 164 (412)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT---------TCCCCCSEEEEC------HHHHHHHHTTSCSS
T ss_pred EECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh---------hhcCCCCEEEEC------chHHHHHHHhcCCc
Confidence 99999999999999888753 33443333322110 011224565554 44443332 1 23
Q ss_pred hcCCccEEEEeccccccc-cCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEec---CCCC
Q 011387 155 SRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNR 229 (487)
Q Consensus 155 ~~~~l~~lViDEah~~~~-~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~~ 229 (487)
....++++|+||||++.+ ++ +...+. .+...++ +.+++++|||+++.........+ ..+..+.. ....
T Consensus 165 ~~~~~~~iViDEah~~~~~~~--~~~~~~---~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 237 (412)
T 3fht_A 165 DPKKIKVFVLDEADVMIATQG--HQDQSI---RIQRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIKLKREEETL 237 (412)
T ss_dssp CGGGCCEEEEETHHHHHSTTT--THHHHH---HHHHTSCTTCEEEEEESCCCHHHHHHHHHHS--SSCEEECCCGGGSSC
T ss_pred ChhhCcEEEEeCHHHHhhcCC--cHHHHH---HHHhhCCCCceEEEEEeecCHHHHHHHHHhc--CCCeEEeeccccccc
Confidence 346789999999999987 44 444433 3344443 68999999999998777555544 34444332 2233
Q ss_pred CcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCC
Q 011387 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (487)
Q Consensus 230 ~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (487)
+++............+...+.+++....+.++||||++++.++.+++.|.+.|+.+..+||++++++|.++++.|.+|+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 317 (412)
T 3fht_A 238 DTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 317 (412)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCC
Confidence 44555555555556788888888888888899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCccccccccCCCcEEEEeCCC------CCHHHHHHHHhccCCCCCCceEEEEEecch-HHHHHHHHHhccc
Q 011387 310 QVVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKNQS 379 (487)
Q Consensus 310 ~vLVaT~~~~~GiDip~v~~VI~~~~p------~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d-~~~~~~i~~~~~~ 379 (487)
+|||||+++++|||+|++++||++++| .+...|+||+||+||.|+.|.|++++++.+ ...++.+.+....
T Consensus 318 ~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~ 394 (412)
T 3fht_A 318 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK 394 (412)
T ss_dssp SEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTC
T ss_pred cEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCC
Confidence 999999999999999999999999999 578999999999999999999999998775 6666666665443
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.8e-48 Score=385.09 Aligned_cols=341 Identities=18% Similarity=0.281 Sum_probs=272.4
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHHHhHhcC-----CCeEEEeCcHH
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLI 88 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~-~dvlv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~ 88 (487)
..|+++++++++.+.|++ +|+..|+|+|+++++.++++ +++++.+|||+|||++|++|++.. +.+++|++|++
T Consensus 6 ~~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~ 84 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR 84 (367)
T ss_dssp CCGGGSSCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred CchhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCH
Confidence 357788999999999998 69999999999999999988 699999999999999999988753 67899999999
Q ss_pred HHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCCccEE
Q 011387 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLV 162 (487)
Q Consensus 89 ~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l~~l 162 (487)
+|+.|+.+.++++ ++......++.......... . ..+++++||+.+ ..+.. ......++++
T Consensus 85 ~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~----~~~iiv~T~~~l------~~~~~~~~~~~~~~~~i 151 (367)
T 1hv8_A 85 ELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---K----NANIVVGTPGRI------LDHINRGTLNLKNVKYF 151 (367)
T ss_dssp HHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH---H----TCSEEEECHHHH------HHHHHTTCSCTTSCCEE
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc---C----CCCEEEecHHHH------HHHHHcCCcccccCCEE
Confidence 9999999999884 45566666665544332221 1 256666655543 33322 2345678999
Q ss_pred EEeccccccccCCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCc
Q 011387 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL 241 (487)
Q Consensus 163 ViDEah~~~~~g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~ 241 (487)
|+||||++.+++ |... +..+.... ++.+++++|||+++.....+...++ .+..+.... ..++....... .
T Consensus 152 IiDEah~~~~~~--~~~~---~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~-~ 222 (367)
T 1hv8_A 152 ILDEADEMLNMG--FIKD---VEKILNACNKDKRILLFSATMPREILNLAKKYMG--DYSFIKAKI-NANIEQSYVEV-N 222 (367)
T ss_dssp EEETHHHHHTTT--THHH---HHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCC--SEEEEECCS-SSSSEEEEEEC-C
T ss_pred EEeCchHhhhhc--hHHH---HHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcC--CCeEEEecC-CCCceEEEEEe-C
Confidence 999999999887 5443 34444444 4788999999999987766555443 333333222 22333333222 2
Q ss_pred hhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccc
Q 011387 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (487)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~G 321 (487)
...++..+.++++ ..+.++||||++++.++.+++.|++.|..+..+||+++.++|.++++.|.+|+.+|||||+++++|
T Consensus 223 ~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 301 (367)
T 1hv8_A 223 ENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRG 301 (367)
T ss_dssp GGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHH
T ss_pred hHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcC
Confidence 3567777888776 456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhccc
Q 011387 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (487)
Q Consensus 322 iDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (487)
+|+|++++||+++.|.|...|+||+||+||.|++|.+++++++.|...++.+.+..+.
T Consensus 302 id~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 302 IDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 359 (367)
T ss_dssp CCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred CCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999998888776544
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3e-48 Score=392.70 Aligned_cols=340 Identities=18% Similarity=0.255 Sum_probs=266.9
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeC
Q 011387 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVS 85 (487)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~--~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~ 85 (487)
...|+.+++++++.+.|.+ +|+..|+|+|.++++.++++ +++++.||||+|||++|++|++.. +++++|++
T Consensus 4 ~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 3678899999999999998 79999999999999999998 999999999999999999998753 66899999
Q ss_pred cHHHHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhhcCCc
Q 011387 86 PLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLL 159 (487)
Q Consensus 86 P~~~L~~q~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~~~~l 159 (487)
|+++|+.|+.+.+++++ +......++.... ......+++++||+.+ ..+. .......+
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~iiv~T~~~l------~~~~~~~~~~~~~~ 146 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK----------NKQINAQVIVGTPGTV------LDLMRRKLMQLQKI 146 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT----------TSCBCCSEEEECHHHH------HHHHHTTCBCCTTC
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh----------hccCCCCEEEEcHHHH------HHHHHcCCcccccC
Confidence 99999999999999853 3343333322111 0111355655555533 3332 23346679
Q ss_pred cEEEEeccccccc-cCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEe---cCCCCCcceE
Q 011387 160 NLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK---SSFNRPNLFY 234 (487)
Q Consensus 160 ~~lViDEah~~~~-~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~~~~ 234 (487)
+++|+||||++.+ ++ +...+ ..+...++ +.+++++|||+++.........+. .+..+. .....+.+..
T Consensus 147 ~~iIiDEah~~~~~~~--~~~~~---~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 219 (395)
T 3pey_A 147 KIFVLDEADNMLDQQG--LGDQC---IRVKRFLPKDTQLVLFSATFADAVRQYAKKIVP--NANTLELQTNEVNVDAIKQ 219 (395)
T ss_dssp CEEEEETHHHHHHSTT--HHHHH---HHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSC--SCEEECCCGGGCSCTTEEE
T ss_pred CEEEEEChhhhcCccc--cHHHH---HHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCC--CCeEEEccccccccccccE
Confidence 9999999999987 44 44433 33444444 689999999999887665544443 333222 2233445555
Q ss_pred EEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011387 235 EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (487)
Q Consensus 235 ~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVa 314 (487)
.+........+...+..++....++++||||++++.++.+++.|++.|+.+..+||+++.++|.++++.|.+|+.+||||
T Consensus 220 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 299 (395)
T 3pey_A 220 LYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLIT 299 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEE
T ss_pred EEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 55555455667778888888778889999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccCCCcEEEEeCCCC------CHHHHHHHHhccCCCCCCceEEEEEecchHH-HHHHHHHhc
Q 011387 315 TVAFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRR-RMEFILSKN 377 (487)
Q Consensus 315 T~~~~~GiDip~v~~VI~~~~p~------s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~-~~~~i~~~~ 377 (487)
|+++++|+|+|++++||++++|. |...|+||+||+||.|+.|.|++++...+.. .++.+.+..
T Consensus 300 T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~ 369 (395)
T 3pey_A 300 TNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 369 (395)
T ss_dssp CGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHT
T ss_pred CChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHh
Confidence 99999999999999999999999 9999999999999999999999999876544 444444433
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.9e-48 Score=382.90 Aligned_cols=325 Identities=18% Similarity=0.241 Sum_probs=258.1
Q ss_pred hhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHc
Q 011387 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK 101 (487)
Q Consensus 22 l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (487)
+++++.+.|++ +|+..|+|+|+++++.+++++++++.+|||+|||++|++|++..+.+++|++|+++|+.|+.+.++++
T Consensus 1 l~~~i~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 1 MNEKIEQAIRE-MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp CCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 45788999987 79999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCCccEEEEeccccccccCC
Q 011387 102 ----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGH 175 (487)
Q Consensus 102 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l~~lViDEah~~~~~g~ 175 (487)
+.....+.++......... +. ..+++++||+.+ ..+.. ......++++|+||||++.+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~i~v~T~~~l------~~~~~~~~~~~~~~~~iViDEah~~~~~~- 145 (337)
T 2z0m_A 80 GRYMDTKVAEVYGGMPYKAQINR---VR----NADIVVATPGRL------LDLWSKGVIDLSSFEIVIIDEADLMFEMG- 145 (337)
T ss_dssp TTTSCCCEEEECTTSCHHHHHHH---HT----TCSEEEECHHHH------HHHHHTTSCCGGGCSEEEEESHHHHHHTT-
T ss_pred hhhcCCcEEEEECCcchHHHHhh---cC----CCCEEEECHHHH------HHHHHcCCcchhhCcEEEEEChHHhhccc-
Confidence 4666677766655433221 11 156666665543 33321 2235668999999999999988
Q ss_pred CChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHHHH
Q 011387 176 DFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254 (487)
Q Consensus 176 ~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 254 (487)
|.. .+..+....+ ..+++++|||+++.....+...+. .+..+......+++...+..... ........+.
T Consensus 146 -~~~---~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 216 (337)
T 2z0m_A 146 -FID---DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFIT--NYEEIEACIGLANVEHKFVHVKD---DWRSKVQALR 216 (337)
T ss_dssp -CHH---HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSC--SCEEEECSGGGGGEEEEEEECSS---SSHHHHHHHH
T ss_pred -cHH---HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcC--CceeeecccccCCceEEEEEeCh---HHHHHHHHHH
Confidence 443 3444555555 566788999999988776666543 44444444445555554444332 1223345666
Q ss_pred hCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeC
Q 011387 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (487)
Q Consensus 255 ~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~ 334 (487)
...+.++||||++++.++.+++.|. .+..+||+++.++|.++++.|.+|+.+|||||+++++|+|+|++++||+++
T Consensus 217 ~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 292 (337)
T 2z0m_A 217 ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFD 292 (337)
T ss_dssp TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESS
T ss_pred hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEec
Confidence 7788899999999999999998886 588999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHH
Q 011387 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (487)
Q Consensus 335 ~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~ 375 (487)
.|.|...|+||+||+||.|++|.|++|+. .|...++.+.+
T Consensus 293 ~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~ 332 (337)
T 2z0m_A 293 APQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKK 332 (337)
T ss_dssp CCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-
T ss_pred CCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHH
Confidence 99999999999999999999999999999 77666666543
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.5e-49 Score=400.89 Aligned_cols=344 Identities=19% Similarity=0.250 Sum_probs=144.9
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc------CCCeEEEeCc
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~------~~~~~lvl~P 86 (487)
....|+++++++++.+.|.. +|+.+|+|+|+++++.+++++++++.+|||+|||++|++|++. .+++++|++|
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 97 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAP 97 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred ccCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcC
Confidence 34568889999999999998 7999999999999999999999999999999999999999875 3668999999
Q ss_pred HHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhhcCCcc
Q 011387 87 LIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLN 160 (487)
Q Consensus 87 ~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~~~~l~ 160 (487)
+++|+.|+.+.+.++ ++....+.++........... ..+++++||+.+ .... .......++
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~i~v~T~~~l------~~~~~~~~~~~~~~~ 164 (394)
T 1fuu_A 98 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-------DAQIVVGTPGRV------FDNIQRRRFRTDKIK 164 (394)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-------HCSEEEECHHHH------HHHHHTTSSCCTTCC
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-------CCCEEEECHHHH------HHHHHhCCcchhhCc
Confidence 999999999998874 566777777766554433222 156666665543 2222 223356789
Q ss_pred EEEEeccccccccCCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC---CCCCcceEEE
Q 011387 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEV 236 (487)
Q Consensus 161 ~lViDEah~~~~~g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~~~~~v 236 (487)
++|+||||++.+++ |+..+.. +...+ ++.+++++|||+++.....+...+. .+..+... ...+++....
T Consensus 165 ~vIiDEah~~~~~~--~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 237 (394)
T 1fuu_A 165 MFILDEADEMLSSG--FKEQIYQ---IFTLLPPTTQVVLLSATMPNDVLEVTTKFMR--NPVRILVKKDELTLEGIKQFY 237 (394)
T ss_dssp EEEEETHHHHHHTT--CHHHHHH---HHHHSCTTCEEEEECSSCCHHHHHHHHHHCC--SCEEEEECC------------
T ss_pred EEEEEChHHhhCCC--cHHHHHH---HHHhCCCCceEEEEEEecCHHHHHHHHHhcC--CCeEEEecCccccCCCceEEE
Confidence 99999999998887 6655444 34444 4788999999999887665555443 33333221 1122222222
Q ss_pred EeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 011387 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (487)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~ 316 (487)
........+...+.++++...+.++||||++++.++.+++.|++.|+.+..+||+++.++|.++++.|.+|+.+|||||+
T Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 317 (394)
T 1fuu_A 238 VNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 317 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 22222223555666666666778999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhc
Q 011387 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (487)
Q Consensus 317 ~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~ 377 (487)
++++|+|+|++++||+++.|.+...|+||+||+||.|++|.|++++++.|...++.+.+..
T Consensus 318 ~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~ 378 (394)
T 1fuu_A 318 LLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 378 (394)
T ss_dssp -------------------------------------------------------------
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988777766543
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2e-47 Score=390.01 Aligned_cols=331 Identities=17% Similarity=0.218 Sum_probs=254.7
Q ss_pred hHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHH
Q 011387 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK 99 (487)
Q Consensus 23 ~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~ 99 (487)
.+++.+.+++.||+ +|+|+|.++++.+++|+|+++.||||+|||++|++|++. .+++++|++|+++|+.|+.+.++
T Consensus 7 ~~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 7 YEDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHH
Confidence 45678888888998 699999999999999999999999999999999999876 68899999999999999999999
Q ss_pred H---cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccC--
Q 011387 100 E---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG-- 174 (487)
Q Consensus 100 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g-- 174 (487)
. .++.+..+.++.....+......+..+. .+++++|| +.+..+........++++|+||||++.+|+
T Consensus 86 ~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~--~~Iiv~Tp------~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 86 KLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILVFST------QFVSKNREKLSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC--CSEEEEEH------HHHHHCHHHHTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHccCCceEEEEECCCChhhHHHHHHHhhcCC--CCEEEECH------HHHHHHHHHhccccccEEEEeChHhhhhccch
Confidence 9 4778899999988876666666666554 55655554 444444344566789999999999998876
Q ss_pred -------CCChHH-HHHHHHHHH------h---CCCCcEEEEecCC-ChHHHHHHHHHh-cCCCCeEEecCCCCCcceEE
Q 011387 175 -------HDFRPS-YRKLSSLRN------Y---LPDVPILALTATA-APKVQKDVMESL-CLQNPLVLKSSFNRPNLFYE 235 (487)
Q Consensus 175 -------~~f~~~-~~~l~~l~~------~---~~~~~~i~lSAT~-~~~~~~~i~~~l-~~~~~~~~~~~~~~~~~~~~ 235 (487)
.+|++. +..+..... . .++.+++++|||+ +......+...+ ..... ......+++...
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~ 234 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG---RLVSVARNITHV 234 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSS---CCCCCCCSEEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcC---ccccccccchhe
Confidence 667776 444433322 1 1578999999994 444333333322 21111 112223344443
Q ss_pred EEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceE-EecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011387 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA 314 (487)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~-~~h~~l~~~~R~~~~~~f~~g~~~vLVa 314 (487)
+... ++...+.++++. .+.++||||++++.++.+++.|++.|+.+. .+||+ +|. ++.|++|+.+||||
T Consensus 235 ~~~~----~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 235 RISS----RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp EESS----CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred eecc----CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 3333 344556666666 347899999999999999999999999998 99984 444 99999999999999
Q ss_pred ----cCccccccccCC-CcEEEEeCCC--CCHHHHHHHHhccCCCC----CCceEEEEEecchHHHHHHHHHhcc
Q 011387 315 ----TVAFGMGIDRKD-VRLVCHFNIP--KSMEAFYQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFILSKNQ 378 (487)
Q Consensus 315 ----T~~~~~GiDip~-v~~VI~~~~p--~s~~~y~Qr~GRagR~g----~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (487)
|+++++|||+|+ +++||+||+| .+...|+||+||+||.| +.|.+++++ .|...++.+.+...
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999987 589999999 55555555554433
No 17
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.2e-48 Score=406.74 Aligned_cols=341 Identities=20% Similarity=0.266 Sum_probs=135.0
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhHhcC------CCeEEEe
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVV 84 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~--~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl 84 (487)
+...|..+++++++.+.|.+ +||..|+|+|.++++.++.+ +++++.||||||||++|++|++.. ++++||+
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil 168 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEE
T ss_pred CcCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEE
Confidence 45578889999999999998 79999999999999999987 899999999999999999999854 3389999
Q ss_pred CcHHHHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH-h--hhhc
Q 011387 85 SPLIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K--IHSR 156 (487)
Q Consensus 85 ~P~~~L~~q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~-~--~~~~ 156 (487)
+|+++|+.|+.+.++.+ +........+..... ......+++ ++||+.+..+. + ....
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~Iv------v~Tp~~l~~~l~~~~~~~~ 233 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIV------IGTPGTVLDWCSKLKFIDP 233 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT---------TCCCCCSEE------EECHHHHHHHHTTSCCCCG
T ss_pred eChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc---------cccCCCCEE------EECchHHHHHHHhcCCcCc
Confidence 99999999998887764 233333333221110 001123454 45555544443 2 3344
Q ss_pred CCccEEEEeccccccc-cCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCC---CCc
Q 011387 157 GLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPN 231 (487)
Q Consensus 157 ~~l~~lViDEah~~~~-~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~ 231 (487)
.++++|||||||++.+ ++ |.... ..+...++ +.+++++|||++..+.......+ ..+..+..... ...
T Consensus 234 ~~~~~iViDEah~~~~~~~--~~~~~---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 306 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQG--HQDQS---IRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIKLKREEETLDT 306 (479)
T ss_dssp GGCCEEEECCHHHHHTSTT--HHHHH---HHHHTTSCTTSEEEEEESCCCHHHHHHHHHHS--SSEEEEEEC--------
T ss_pred ccCCEEEEECHHHHhhcCC--cHHHH---HHHHhhCCccceEEEEeCCCCHHHHHHHHHHc--CCCeEEeccccccCcCC
Confidence 6799999999999986 44 44333 33444444 78999999999998766444433 44443332211 122
Q ss_pred ceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcE
Q 011387 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (487)
Q Consensus 232 ~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~v 311 (487)
+...+........+...+..++......++||||++++.++.+++.|.+.+..+..+||++++.+|..+++.|.+|+.+|
T Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~i 386 (479)
T 3fmp_B 307 IKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 386 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcE
Confidence 22222222222456666777777667788999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccccCCCcEEEEeCCC------CCHHHHHHHHhccCCCCCCceEEEEEecch-HHHHHHHHHh
Q 011387 312 VVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSK 376 (487)
Q Consensus 312 LVaT~~~~~GiDip~v~~VI~~~~p------~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d-~~~~~~i~~~ 376 (487)
||||+++++|||+|++++||+||+| .+...|+||+|||||.|+.|.|++|+++.+ ...++.+.+.
T Consensus 387 Lv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~ 458 (479)
T 3fmp_B 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEH 458 (479)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHH
Confidence 9999999999999999999999999 467899999999999999999999998765 5555555443
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-47 Score=394.63 Aligned_cols=342 Identities=18% Similarity=0.241 Sum_probs=218.9
Q ss_pred CCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCcHH
Q 011387 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (487)
Q Consensus 17 ~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~--~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~ 88 (487)
+.+.++++++.+.+.+ .|+..|+++|+++++.++++ +++++.||||+|||++|++|++.. ++++||++|++
T Consensus 121 ~~~~~l~~~~~~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~ 199 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSR 199 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCH
T ss_pred cccccccccccccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcH
Confidence 4556677888888887 59999999999999999998 999999999999999999988743 45899999999
Q ss_pred HHHHHHHHHHHHcCCceEE-ecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhhcCCccEEEEe
Q 011387 89 ALMENQVIGLKEKGIAGEF-LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNLVAID 165 (487)
Q Consensus 89 ~L~~q~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~~~~l~~lViD 165 (487)
+|+.|+.+.+++++..... .......... . ......+++++||+.+ ..+. .......+++||||
T Consensus 200 ~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~Ivv~T~~~l------~~~l~~~~~~~~~~~lIIiD 266 (508)
T 3fho_A 200 ELARQIMDVVTEMGKYTEVKTAFGIKDSVP----K---GAKIDAQIVIGTPGTV------MDLMKRRQLDARDIKVFVLD 266 (508)
T ss_dssp HHHHHHHHHHHHHSTTSSCCEEC-----------------CCCCSEEEECHHHH------HHHHHTTCSCCTTCCEEEEC
T ss_pred HHHHHHHHHHHHhCCccCeeEEEEeCCccc----c---cccCCCCEEEECHHHH------HHHHHcCCccccCCCEEEEe
Confidence 9999999999986422111 1111111000 0 0111356666655543 2222 22346679999999
Q ss_pred ccccccc-cCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEec---CCCCCcceEEEEeeC
Q 011387 166 EAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYKD 240 (487)
Q Consensus 166 Eah~~~~-~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~~~~~v~~~~ 240 (487)
|||++.+ ++ |...+.. +...++ +.+++++|||+++.......... ..+..+.. ....+++........
T Consensus 267 EaH~~~~~~~--~~~~~~~---i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~ 339 (508)
T 3fho_A 267 EADNMLDQQG--LGDQSMR---IKHLLPRNTQIVLFSATFSERVEKYAERFA--PNANEIRLKTEELSVEGIKQLYMDCQ 339 (508)
T ss_dssp CHHHHTTC----CHHHHHH---HHHHSCTTCEEEEEESCCSTHHHHHHHHHS--TTCEEECCCCCC----CCCCEEEEC-
T ss_pred chhhhcccCC--cHHHHHH---HHHhCCcCCeEEEEeCCCCHHHHHHHHHhc--CCCeEEEeccccCCcccceEEEEECC
Confidence 9999987 44 5544443 444444 78899999999987765444433 23332221 122233333333333
Q ss_pred chhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcccc
Q 011387 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (487)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~ 320 (487)
....+...+..+++...++++||||++++.++.+++.|.+.+..+..+||+++.++|..+++.|.+|+.+|||||+++++
T Consensus 340 ~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~ 419 (508)
T 3fho_A 340 SEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIAR 419 (508)
T ss_dssp -CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC----
T ss_pred chHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhc
Confidence 33567777888888778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEEEEeCCC------CCHHHHHHHHhccCCCCCCceEEEEEecc-hHHHHHHHHHhccc
Q 011387 321 GIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKNQS 379 (487)
Q Consensus 321 GiDip~v~~VI~~~~p------~s~~~y~Qr~GRagR~g~~g~~i~~~~~~-d~~~~~~i~~~~~~ 379 (487)
|+|+|++++||+++.| .|...|+||+||+||.|++|.|++|+.+. +...+..+.+....
T Consensus 420 GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~ 485 (508)
T 3fho_A 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQR 485 (508)
T ss_dssp -CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCC
T ss_pred CCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCC
Confidence 9999999999999999 78999999999999999999999999854 55556666555443
No 19
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.2e-44 Score=402.14 Aligned_cols=398 Identities=17% Similarity=0.222 Sum_probs=267.6
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH
Q 011387 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 24 ~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
.++...+...|+|+ |+++|.++++.+++|+++++.||||+|||++|++++.. .+++++|++|+++|+.|+++++++
T Consensus 26 ~~l~~~~~~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 26 DELIPNPARSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp HHHCSSCSCCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHT
T ss_pred hhhhHhHHHhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH
Confidence 44444455668886 89999999999999999999999999999998877653 478899999999999999999998
Q ss_pred c--CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH-HhhhhcCCccEEEEeccccccccCCCC
Q 011387 101 K--GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISSWGHDF 177 (487)
Q Consensus 101 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l-~~~~~~~~l~~lViDEah~~~~~g~~f 177 (487)
. ++.+..++++... ....+++++||+.+.. .+ ........+++|||||||++.+|++..
T Consensus 105 ~~~~~~v~~l~G~~~~-------------~~~~~IlV~Tpe~L~~-----~l~~~~~~l~~l~lvViDEaH~l~d~~~g~ 166 (997)
T 4a4z_A 105 TFDDVNIGLITGDVQI-------------NPDANCLIMTTEILRS-----MLYRGADLIRDVEFVIFDEVHYVNDQDRGV 166 (997)
T ss_dssp TC--CCEEEECSSCEE-------------CTTSSEEEEEHHHHHH-----HHHHTCSGGGGEEEEEECCTTCCCTTCTTC
T ss_pred HcCCCeEEEEeCCCcc-------------CCCCCEEEECHHHHHH-----HHHhCchhhcCCCEEEEECcccccccchHH
Confidence 5 5677777765531 1336787777765521 22 222235678999999999999988543
Q ss_pred hHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcC---CCCeEEecCCCCCcceEEEEee--------------
Q 011387 178 RPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCL---QNPLVLKSSFNRPNLFYEVRYK-------------- 239 (487)
Q Consensus 178 ~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~---~~~~~~~~~~~~~~~~~~v~~~-------------- 239 (487)
.+. .+...+| +++++++|||+++.. ++..+++. ....++.......++...+...
T Consensus 167 --~~e---~ii~~l~~~v~iIlLSAT~~n~~--ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~ 239 (997)
T 4a4z_A 167 --VWE---EVIIMLPQHVKFILLSATVPNTY--EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFL 239 (997)
T ss_dssp --CHH---HHHHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBC
T ss_pred --HHH---HHHHhcccCCCEEEEcCCCCChH--HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhh
Confidence 233 3334444 789999999987653 44555442 2222333222222222111100
Q ss_pred ------------------------------------------------------------------------------Cc
Q 011387 240 ------------------------------------------------------------------------------DL 241 (487)
Q Consensus 240 ------------------------------------------------------------------------------~~ 241 (487)
..
T Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (997)
T 4a4z_A 240 EANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGP 319 (997)
T ss_dssp HHHHHHHHHHHC-----------------------------------------------------------------CCC
T ss_pred HHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00
Q ss_pred hhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCC--------------------------------------
Q 011387 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI-------------------------------------- 283 (487)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~-------------------------------------- 283 (487)
....+..+...+......++||||+|++.|+.++..|.+.++
T Consensus 320 ~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 399 (997)
T 4a4z_A 320 SKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE 399 (997)
T ss_dssp CTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence 123456777888888888999999999999999999987665
Q ss_pred -ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCC---------CHHHHHHHHhccCCCC
Q 011387 284 -SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK---------SMEAFYQESGRAGRDQ 353 (487)
Q Consensus 284 -~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~---------s~~~y~Qr~GRagR~g 353 (487)
.+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|+ +.||+++.|+ |..+|+||+|||||.|
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G 478 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRG 478 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTT
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCC
Confidence 4789999999999999999999999999999999999999999 6677777666 9999999999999998
Q ss_pred --CCceEEEEE--ecchHHHHHHHHHhcccCCCCcchhh----HhhhHHHHHHHHHhhhc---------ccchHHHHhcc
Q 011387 354 --LPSKSLLYY--GMDDRRRMEFILSKNQSKNSQSFSTR----ERSSKKSISDFSQVLDV---------AGKRFSRVLGN 416 (487)
Q Consensus 354 --~~g~~i~~~--~~~d~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~---------~~crr~~i~~~ 416 (487)
..|.|++++ ...+...++.++..........+... ....+........|+++ ..|++...+.
T Consensus 479 ~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~- 557 (997)
T 4a4z_A 479 LDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIK- 557 (997)
T ss_dssp TCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHH-
T ss_pred CCcceEEEEecCCCcchHHHHHHHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH-
Confidence 567777777 34466666666654433222111000 00001111122333332 5688888888
Q ss_pred cCCCCCCCCcccccccccccccccccCccCCCCCccCCCCCCCCCh----hhhHHHHHHHHH
Q 011387 417 RYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPN----LLAKYLGELTSA 474 (487)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~c~~~cd~c~~~~----~~~~~~~~~~~~ 474 (487)
+| ++......|. .||+|..+. ..++.+.++.+.
T Consensus 558 ----------------------~l--~~~~~~~~~~-~c~~c~~~~~~~~~~r~~~~~~~~~ 594 (997)
T 4a4z_A 558 ----------------------VL--QEELQTIEYK-SCEICDNDIEKFLELMLAYKEATVN 594 (997)
T ss_dssp ----------------------HH--HHHHHC---------------CHHHHHHHHHHHHHH
T ss_pred ----------------------HH--HHHHHHhhhh-ccccccccHHHHHHHHHHHHHHHHH
Confidence 77 7776555676 699996432 334444444444
No 20
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.1e-45 Score=401.82 Aligned_cols=320 Identities=19% Similarity=0.243 Sum_probs=212.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC-----C----CeEEEeCcHHHHHHHH-HHHHHHcC---Cc
Q 011387 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----P----GIVLVVSPLIALMENQ-VIGLKEKG---IA 104 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~-----~----~~~lvl~P~~~L~~q~-~~~l~~~~---~~ 104 (487)
+|||+|.++++.+++|+++++.+|||+|||++|++|++.. . +++|||+|+++|+.|+ .+++++++ +.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 6999999999999999999999999999999999998753 2 8899999999999999 99999864 67
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHH--HHhhhhcCCccEEEEeccccccccCCCChHHHH
Q 011387 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK--LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (487)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~--l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~ 182 (487)
+..++++.......... . ...+++++||+.+........ .........+++|||||||++.. ++.++....
T Consensus 87 v~~~~g~~~~~~~~~~~---~---~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~-~~~~~~i~~ 159 (699)
T 4gl2_A 87 VIGLSGDTQLKISFPEV---V---KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK-EAVYNNIMR 159 (699)
T ss_dssp EEEEC----CCCCHHHH---H---HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT-TBSSCSHHH
T ss_pred EEEEeCCcchhhHHHhh---h---cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc-cchHHHHHH
Confidence 77777665432211111 1 126777777765532110000 11223456789999999999854 333443332
Q ss_pred HHHH--HHHhC---------CCCcEEEEecCCChH-------HHHHHH---HHhcCCCCeE-------EecCCCCCcceE
Q 011387 183 KLSS--LRNYL---------PDVPILALTATAAPK-------VQKDVM---ESLCLQNPLV-------LKSSFNRPNLFY 234 (487)
Q Consensus 183 ~l~~--l~~~~---------~~~~~i~lSAT~~~~-------~~~~i~---~~l~~~~~~~-------~~~~~~~~~~~~ 234 (487)
.+.. +.... +..++++||||+... ....+. ..+....... +.....+|+..+
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 160 HYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEE
Confidence 2111 11111 677899999999873 333333 3332210000 001112333332
Q ss_pred EEEeeCc-------------------------------------------------------------------------
Q 011387 235 EVRYKDL------------------------------------------------------------------------- 241 (487)
Q Consensus 235 ~v~~~~~------------------------------------------------------------------------- 241 (487)
.......
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRM 319 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211100
Q ss_pred -----------------------------------------------------------hhhHHHHHHHHH----HhCC-
Q 011387 242 -----------------------------------------------------------LDDAYADLCSVL----KANG- 257 (487)
Q Consensus 242 -----------------------------------------------------------~~~~~~~l~~~l----~~~~- 257 (487)
...++..|.+++ ...+
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~ 399 (699)
T 4gl2_A 320 IDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEE 399 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 000111122222 2223
Q ss_pred CceEEEEecccchHHHHHHHHHhC------CCceEEecCC--------CCHHHHHHHHHHHhcCCCcEEEEcCccccccc
Q 011387 258 DTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (487)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~------g~~~~~~h~~--------l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiD 323 (487)
+.++||||++++.++.+++.|++. |+.+..+||+ |++++|.++++.|++|+.+|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 789999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecch
Q 011387 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (487)
Q Consensus 324 ip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d 366 (487)
+|++++|||||+|+|+..|+||+|||||.| +.+++++...+
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGS 520 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSS
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCc
Confidence 999999999999999999999999988776 45555544443
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4.8e-45 Score=396.60 Aligned_cols=328 Identities=19% Similarity=0.260 Sum_probs=202.1
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC--------CCeEEEeCcHHHHHHHHHHHHH
Q 011387 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLK 99 (487)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~--------~~~~lvl~P~~~L~~q~~~~l~ 99 (487)
..|.. +|+.+||++|.++++.+++|+|+++.+|||+|||++|++|++.. ++++||++|+++|+.|+.+.++
T Consensus 4 ~~l~~-~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 4 SDTNL-YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ---CT-TC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred Ccccc-cCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 34554 79999999999999999999999999999999999999998743 2789999999999999999999
Q ss_pred Hc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhh--h-hcCCccEEEEeccccccc
Q 011387 100 EK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--H-SRGLLNLVAIDEAHCISS 172 (487)
Q Consensus 100 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~--~-~~~~l~~lViDEah~~~~ 172 (487)
++ ++.+..+.++......... +.. ..+++++||+.+ ...... . ....++++||||||++..
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~---~~~---~~~Iiv~Tp~~L------~~~l~~~~~~~l~~~~~vViDEaH~~~~ 150 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQ---IVE---NNDIIILTPQIL------VNNLKKGTIPSLSIFTLMIFDECHNTSK 150 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHH---HHH---TCSEEEECHHHH------HHHHHTTSSCCGGGCSEEEEETGGGCST
T ss_pred HHhccCCceEEEEeCCccccccHHH---hcc---CCCEEEECHHHH------HHHHhcCcccccccccEEEEeCCCcccC
Confidence 86 6778777776543221111 111 256766666543 333221 2 456689999999999986
Q ss_pred cCCCChHHHHHHHHHHHh-----CCCCcEEEEecCCC-------hHHHHHHHHHhcCCCCeEEecCC----------CCC
Q 011387 173 WGHDFRPSYRKLSSLRNY-----LPDVPILALTATAA-------PKVQKDVMESLCLQNPLVLKSSF----------NRP 230 (487)
Q Consensus 173 ~g~~f~~~~~~l~~l~~~-----~~~~~~i~lSAT~~-------~~~~~~i~~~l~~~~~~~~~~~~----------~~~ 230 (487)
+. .++..... .+... .+..++++||||+. ......+...+...+...+.... ..|
T Consensus 151 ~~-~~~~i~~~--~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p 227 (696)
T 2ykg_A 151 QH-PYNMIMFN--YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKP 227 (696)
T ss_dssp TC-HHHHHHHH--HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCC
T ss_pred cc-cHHHHHHH--HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCC
Confidence 53 22222211 12222 25678999999998 44445554443211111111000 000
Q ss_pred cceE---------------------------------------------------------------EEEe---------
Q 011387 231 NLFY---------------------------------------------------------------EVRY--------- 238 (487)
Q Consensus 231 ~~~~---------------------------------------------------------------~v~~--------- 238 (487)
...+ ....
T Consensus 228 ~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (696)
T 2ykg_A 228 QKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 307 (696)
T ss_dssp EEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHH
T ss_pred ceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHH
Confidence 0000 0000
Q ss_pred -------------------------------------------------------------------eCchhhHHHHHHH
Q 011387 239 -------------------------------------------------------------------KDLLDDAYADLCS 251 (487)
Q Consensus 239 -------------------------------------------------------------------~~~~~~~~~~l~~ 251 (487)
......++..|.+
T Consensus 308 ~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ 387 (696)
T 2ykg_A 308 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 387 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 0001245566666
Q ss_pred HHHhC----CCceEEEEecccchHHHHHHHHHhCC----CceEEe--------cCCCCHHHHHHHHHHHhc-CCCcEEEE
Q 011387 252 VLKAN----GDTCAIVYCLERTTCDELSAYLSAGG----ISCAAY--------HAGLNDKARSSVLDDWIS-SRKQVVVA 314 (487)
Q Consensus 252 ~l~~~----~~~~~iIf~~s~~~~~~l~~~L~~~g----~~~~~~--------h~~l~~~~R~~~~~~f~~-g~~~vLVa 314 (487)
++... ++.++||||++++.++.+++.|++.| +.+..+ ||+|++++|.++++.|.+ |+.+||||
T Consensus 388 ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVa 467 (696)
T 2ykg_A 388 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIA 467 (696)
T ss_dssp HHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEE
T ss_pred HHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEE
Confidence 66654 66789999999999999999999988 888888 569999999999999998 99999999
Q ss_pred cCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHH
Q 011387 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (487)
Q Consensus 315 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i 373 (487)
|+++++|||+|++++|||||+|+|.+.|+||+|| ||. ++|.++++++..+......+
T Consensus 468 T~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 468 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp EESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred echhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 9999999999999999999999999999999999 998 78999999998877554433
No 22
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=3.8e-42 Score=385.16 Aligned_cols=329 Identities=17% Similarity=0.196 Sum_probs=245.3
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH-
Q 011387 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE- 100 (487)
Q Consensus 25 ~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~- 100 (487)
++.+.++..+|+ +|+|+|+++++.+++|+|+++.||||||||++|++|++. .++++||++|+++|+.|+.+.+++
T Consensus 66 ~~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 66 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHh
Confidence 345566677898 599999999999999999999999999999998888765 688999999999999999999999
Q ss_pred --cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccc------
Q 011387 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS------ 172 (487)
Q Consensus 101 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~------ 172 (487)
.++.+..++++....++......+..+. .++++ +||+++..+........+++|||||||++.+
T Consensus 145 ~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~--~~IlV------~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~D 216 (1104)
T 4ddu_A 145 ADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILV------FSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNID 216 (1104)
T ss_dssp SCTTSCEEEECTTCCTTHHHHHHHHHHTSC--CSEEE------EEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHH
T ss_pred hCCCCeEEEEeCCCCHHHHHHHHHHHhCCC--CCEEE------ECHHHHHHHHHhhcccCcCEEEEeCCCccccccccch
Confidence 4678888888887766555666666654 55654 4555554444446677899999999998876
Q ss_pred -----cCCCChHH-HHHHHHHHH------hC---CCCcEEEEecCC-ChHHHHHHHHHhcCCCCeEEecCCCCCcceEEE
Q 011387 173 -----WGHDFRPS-YRKLSSLRN------YL---PDVPILALTATA-APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 236 (487)
Q Consensus 173 -----~g~~f~~~-~~~l~~l~~------~~---~~~~~i~lSAT~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v 236 (487)
|| |.+. +..+..... .+ ++.++++||||+ +..+...+...... ..+.......+++...+
T Consensus 217 r~L~~~g--f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~--i~v~~~~~~~~~i~~~~ 292 (1104)
T 4ddu_A 217 TLLMMVG--IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN--FTVGRLVSVARNITHVR 292 (1104)
T ss_dssp HHHHTSS--CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC--CCCCBCCCCCCCEEEEE
T ss_pred hhhHhcC--CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee--EEeccCCCCcCCceeEE
Confidence 55 5554 344333222 01 468999999995 44333233332211 11112233445555544
Q ss_pred EeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceE-EecCCCCHHHHHHHHHHHhcCCCcEEEE-
Q 011387 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA- 314 (487)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~-~~h~~l~~~~R~~~~~~f~~g~~~vLVa- 314 (487)
... ++...|.++++.. +.++||||++++.++.+++.|++.|+.+. .+|| +|.+ ++.|.+|+.+||||
T Consensus 293 ~~~----~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVat 361 (1104)
T 4ddu_A 293 ISS----RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGV 361 (1104)
T ss_dssp ESC----CCHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEE
T ss_pred Eec----CHHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEe
Confidence 443 3445566666663 47899999999999999999999999998 9999 2555 99999999999999
Q ss_pred ---cCccccccccCC-CcEEEEeCCCC-----------------------------------------------------
Q 011387 315 ---TVAFGMGIDRKD-VRLVCHFNIPK----------------------------------------------------- 337 (487)
Q Consensus 315 ---T~~~~~GiDip~-v~~VI~~~~p~----------------------------------------------------- 337 (487)
|+++++|||+|+ |++|||||+|.
T Consensus 362 as~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i 441 (1104)
T 4ddu_A 362 QAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKV 441 (1104)
T ss_dssp TTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999 99999999998
Q ss_pred -------------------CHHHHHHHHhccCCCCCCc--eEEEEEecchHHHHHHHHHhc
Q 011387 338 -------------------SMEAFYQESGRAGRDQLPS--KSLLYYGMDDRRRMEFILSKN 377 (487)
Q Consensus 338 -------------------s~~~y~Qr~GRagR~g~~g--~~i~~~~~~d~~~~~~i~~~~ 377 (487)
+..+|+||+||+||.|..| .++.+...+|...++.+.+..
T Consensus 442 ~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~ 502 (1104)
T 4ddu_A 442 KEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRL 502 (1104)
T ss_dssp HHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHH
T ss_pred hhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHH
Confidence 7889999999999965433 344444446777666666654
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.4e-42 Score=365.49 Aligned_cols=318 Identities=19% Similarity=0.241 Sum_probs=182.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC--------CCeEEEeCcHHHHHHHHHHHHHHc----C
Q 011387 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----G 102 (487)
Q Consensus 35 g~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~--------~~~~lvl~P~~~L~~q~~~~l~~~----~ 102 (487)
+.-+|||+|.++++.+++|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++ +
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3347999999999999999999999999999999999998754 788999999999999999999885 7
Q ss_pred CceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhh--h-hcCCccEEEEeccccccccCCCChH
Q 011387 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--H-SRGLLNLVAIDEAHCISSWGHDFRP 179 (487)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~--~-~~~~l~~lViDEah~~~~~g~~f~~ 179 (487)
+.+..+.++........... . ..+++++||+ .+..+... . ....++++||||||++.+++. +..
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~---~---~~~i~v~T~~------~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~ 150 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVI---E---DSDIIVVTPQ------ILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNV 150 (556)
T ss_dssp CCEEECCCC-----CHHHHH---H---HCSEEEECHH------HHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHH
T ss_pred ceEEEEeCCCCcchhHHHhh---C---CCCEEEECHH------HHHHHHHhCcccccccCCEEEEECCcccCCcch-HHH
Confidence 88888877764443221111 1 1456555554 44333322 2 466789999999999998773 222
Q ss_pred HHHHHHHHHHh-----CCCCcEEEEecCCChH----------HHHHHHHHhcCCCCeEE-------ecCCCCCcceEEEE
Q 011387 180 SYRKLSSLRNY-----LPDVPILALTATAAPK----------VQKDVMESLCLQNPLVL-------KSSFNRPNLFYEVR 237 (487)
Q Consensus 180 ~~~~l~~l~~~-----~~~~~~i~lSAT~~~~----------~~~~i~~~l~~~~~~~~-------~~~~~~~~~~~~v~ 237 (487)
.. ..+... .+..++++||||+... ....+...++....... .....++.......
T Consensus 151 ~~---~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (556)
T 4a2p_A 151 LM---TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLV 227 (556)
T ss_dssp HH---HHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEEC
T ss_pred HH---HHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEc
Confidence 21 122221 3568899999999542 11222333331100000 00011122111111
Q ss_pred ee------------------------------------------------------------------------------
Q 011387 238 YK------------------------------------------------------------------------------ 239 (487)
Q Consensus 238 ~~------------------------------------------------------------------------------ 239 (487)
..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (556)
T 4a2p_A 228 KRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEH 307 (556)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHH
T ss_pred CCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 00
Q ss_pred ------------------------------------------------------------CchhhHHHHHHHHHHh----
Q 011387 240 ------------------------------------------------------------DLLDDAYADLCSVLKA---- 255 (487)
Q Consensus 240 ------------------------------------------------------------~~~~~~~~~l~~~l~~---- 255 (487)
.....++..|.+++..
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~ 387 (556)
T 4a2p_A 308 LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY 387 (556)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcC
Confidence 0002244445555543
Q ss_pred CCCceEEEEecccchHHHHHHHHHhC------------CCceEEecCCCCHHHHHHHHHHHhc-CCCcEEEEcCcccccc
Q 011387 256 NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMGI 322 (487)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~vLVaT~~~~~Gi 322 (487)
..+.++||||++++.++.+++.|.+. |.....+||+|++++|.++++.|++ |+++|||||+++++||
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 56789999999999999999999875 5566677889999999999999999 9999999999999999
Q ss_pred ccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHH
Q 011387 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (487)
Q Consensus 323 Dip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~ 370 (487)
|+|++++|||||+|+|+..|+||+|| ||. ++|.+++++...+....
T Consensus 468 Dip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 468 DIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp -----CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred CchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 99999999999999999999999999 999 78999999998876544
No 24
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.2e-42 Score=372.79 Aligned_cols=325 Identities=21% Similarity=0.247 Sum_probs=242.0
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEcCCCchhhHHHHHhHhc----CCCeEEEeCcHHH
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIA 89 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~-~l~~~dvlv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~ 89 (487)
-.|.++++++.+.+.+++ +|+..|+|+|.++++. +.++++++++||||||||+++.++++. .+++++|++|+++
T Consensus 8 ~~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~ 86 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRA 86 (715)
T ss_dssp CBGGGSSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHH
T ss_pred CcHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHH
Confidence 357788999999999987 7999999999999999 788999999999999999999988863 5889999999999
Q ss_pred HHHHHHHHHHH---cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH-hh-hhcCCccEEEE
Q 011387 90 LMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KI-HSRGLLNLVAI 164 (487)
Q Consensus 90 L~~q~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~-~~-~~~~~l~~lVi 164 (487)
|+.|++++++. +|+.+....+....... .. ...+++++||+.+ ..+. .. .....++++||
T Consensus 87 La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~----~~~~Iiv~Tpe~l------~~~~~~~~~~l~~~~~vIi 151 (715)
T 2va8_A 87 LTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL----KNYDIIITTYEKL------DSLWRHRPEWLNEVNYFVL 151 (715)
T ss_dssp HHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG----GGCSEEEECHHHH------HHHHHHCCGGGGGEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc----CCCCEEEEcHHHH------HHHHhCChhHhhccCEEEE
Confidence 99999999854 46777776665433221 01 1256666665543 3332 21 22567899999
Q ss_pred eccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceE----------
Q 011387 165 DEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY---------- 234 (487)
Q Consensus 165 DEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~---------- 234 (487)
||||++.+++ +.+.+. .+...+++.++++||||+++. .++..+++.. .+........+..
T Consensus 152 DE~H~l~~~~--~~~~l~---~i~~~~~~~~ii~lSATl~n~--~~~~~~l~~~---~~~~~~r~~~l~~~~~~~~~~~~ 221 (715)
T 2va8_A 152 DELHYLNDPE--RGPVVE---SVTIRAKRRNLLALSATISNY--KQIAKWLGAE---PVATNWRPVPLIEGVIYPERKKK 221 (715)
T ss_dssp CSGGGGGCTT--THHHHH---HHHHHHHTSEEEEEESCCTTH--HHHHHHHTCE---EEECCCCSSCEEEEEEEECSSTT
T ss_pred echhhcCCcc--cchHHH---HHHHhcccCcEEEEcCCCCCH--HHHHHHhCCC---ccCCCCCCCCceEEEEecCCccc
Confidence 9999998755 443333 334444489999999999753 5666776531 2222111111111
Q ss_pred --EEEeeC-------chhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCC-----------------------
Q 011387 235 --EVRYKD-------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG----------------------- 282 (487)
Q Consensus 235 --~v~~~~-------~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g----------------------- 282 (487)
.+...+ ........+.+.+. .++++||||++++.++.+++.|.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~ 299 (715)
T 2va8_A 222 EYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEG 299 (715)
T ss_dssp EEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSS
T ss_pred ceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhc
Confidence 111111 01234444555443 56789999999999999999998642
Q ss_pred -------------CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEE----eC-------CCCC
Q 011387 283 -------------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-------IPKS 338 (487)
Q Consensus 283 -------------~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~----~~-------~p~s 338 (487)
..+.++||+|+.++|..+++.|.+|..+|||||+++++|||+|++++||+ |+ .|.|
T Consensus 300 ~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s 379 (715)
T 2va8_A 300 GSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIP 379 (715)
T ss_dssp CHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------C
T ss_pred cccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCC
Confidence 24899999999999999999999999999999999999999999999999 98 8999
Q ss_pred HHHHHHHHhccCCCC--CCceEEEEEecchH
Q 011387 339 MEAFYQESGRAGRDQ--LPSKSLLYYGMDDR 367 (487)
Q Consensus 339 ~~~y~Qr~GRagR~g--~~g~~i~~~~~~d~ 367 (487)
..+|.||+|||||.| .+|.|+++++..+.
T Consensus 380 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 380 IMEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HHHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HHHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 999999999999988 48999999987763
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-42 Score=389.53 Aligned_cols=338 Identities=17% Similarity=0.132 Sum_probs=241.9
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC---CCeEEEeCcHHHHHH
Q 011387 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALME 92 (487)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~ 92 (487)
.+...++++.+...+...|++ .|+|+|.++++.+++|++++++||||||||++|++|++.. +++++|++|+++|+.
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f-~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~ 241 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSN 241 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSS-CCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred CcccCCCChhhhHHHHHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHH
Confidence 344555556555566655555 5999999999999999999999999999999999998754 889999999999999
Q ss_pred HHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH-hhhhcCCccEEEEecccccc
Q 011387 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDEAHCIS 171 (487)
Q Consensus 93 q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~-~~~~~~~l~~lViDEah~~~ 171 (487)
|+++.+++....+..+.++.. .....+++++||+.+.. .+. .......+++|||||||++.
T Consensus 242 Q~~~~l~~~~~~VglltGd~~-------------~~~~~~IlV~Tpe~L~~-----~L~~~~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 242 QKYRELLAEFGDVGLMTGDIT-------------INPDAGCLVMTTEILRS-----MLYRGSEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp HHHHHHHHHTSSEEEECSSCB-------------CCCSCSEEEEEHHHHHH-----HHHHCSSHHHHEEEEEEETGGGTT
T ss_pred HHHHHHHHHhCCccEEeCccc-------------cCCCCCEEEeChHHHHH-----HHHcCccccccCCEEEEhhhhhcc
Confidence 999999996667777766553 12336676666654421 121 12224568999999999999
Q ss_pred ccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHH-HHHHHHhcCCCCeEEecCCCCCcceEEEEe-----------
Q 011387 172 SWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQ-KDVMESLCLQNPLVLKSSFNRPNLFYEVRY----------- 238 (487)
Q Consensus 172 ~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~----------- 238 (487)
+|+ |...+.. +...++ ++++++||||+++... ..+..........++........+...+..
T Consensus 304 d~~--rg~~~e~---ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd 378 (1108)
T 3l9o_A 304 DKE--RGVVWEE---TIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVD 378 (1108)
T ss_dssp SHH--HHHHHHH---HHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEE
T ss_pred ccc--hHHHHHH---HHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeec
Confidence 876 4444433 344444 7899999999876521 222222222222233222222222111110
Q ss_pred -eCc------------------------------------------hhhHHHHHHHHHHhCCCceEEEEecccchHHHHH
Q 011387 239 -KDL------------------------------------------LDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (487)
Q Consensus 239 -~~~------------------------------------------~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~ 275 (487)
... ....+..+...+......++||||++++.|+.++
T Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la 458 (1108)
T 3l9o_A 379 EKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELA 458 (1108)
T ss_dssp TTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHH
Confidence 000 0233444555666667789999999999999999
Q ss_pred HHHHhCCCc---------------------------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 011387 276 AYLSAGGIS---------------------------------------CAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (487)
Q Consensus 276 ~~L~~~g~~---------------------------------------~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~ 316 (487)
..|...++. +..+||+|++.+|..+++.|.+|.++|||||+
T Consensus 459 ~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~ 538 (1108)
T 3l9o_A 459 LKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATE 538 (1108)
T ss_dssp HHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEES
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECc
Confidence 988653322 78999999999999999999999999999999
Q ss_pred ccccccccCCCcEEEEeCC--------CCCHHHHHHHHhccCCCC--CCceEEEEEecc-hHHHHHHHHHhc
Q 011387 317 AFGMGIDRKDVRLVCHFNI--------PKSMEAFYQESGRAGRDQ--LPSKSLLYYGMD-DRRRMEFILSKN 377 (487)
Q Consensus 317 ~~~~GiDip~v~~VI~~~~--------p~s~~~y~Qr~GRagR~g--~~g~~i~~~~~~-d~~~~~~i~~~~ 377 (487)
++++|||+|++++||+++. |.|..+|+||+|||||.| ..|.|++++++. +...+..++...
T Consensus 539 vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~ 610 (1108)
T 3l9o_A 539 TFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQ 610 (1108)
T ss_dssp CCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCC
T ss_pred HHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCC
Confidence 9999999999999997665 348889999999999999 688899988776 555566666543
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3.4e-42 Score=373.78 Aligned_cols=327 Identities=22% Similarity=0.243 Sum_probs=243.7
Q ss_pred CCCCC--hhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHH
Q 011387 17 NKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALM 91 (487)
Q Consensus 17 ~~~~~--l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~ 91 (487)
|.+++ +++.+.+.+++ +||..|+|+|.++++.+++++++++.||||||||+++.+|++. .+++++|++|+++|+
T Consensus 3 f~~l~~~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La 81 (702)
T 2p6r_A 3 VEELAESISSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALA 81 (702)
T ss_dssp SHHHHHHHHHHHHHHHHC-C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHH
T ss_pred hhhhhhccCHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHH
Confidence 45566 88899999987 8999999999999999999999999999999999999998874 488999999999999
Q ss_pred HHHHHHHHH---cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhh--hhcCCccEEEEec
Q 011387 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAIDE 166 (487)
Q Consensus 92 ~q~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~--~~~~~l~~lViDE 166 (487)
.|++++++. .|+.+..+.+....... .....+++++||+.+ ..+... .....++++||||
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---------~~~~~~Iiv~Tpe~l------~~~l~~~~~~l~~~~~vIiDE 146 (702)
T 2p6r_A 82 GEKYESFKKWEKIGLRIGISTGDYESRDE---------HLGDCDIIVTTSEKA------DSLIRNRASWIKAVSCLVVDE 146 (702)
T ss_dssp HHHHHHHTTTTTTTCCEEEECSSCBCCSS---------CSTTCSEEEEEHHHH------HHHHHTTCSGGGGCCEEEETT
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCCcchh---------hccCCCEEEECHHHH------HHHHHcChhHHhhcCEEEEee
Confidence 999999854 36777777665433211 011356766665543 333221 1256789999999
Q ss_pred cccccccCCCChHHHHH-HHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEE------ee
Q 011387 167 AHCISSWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR------YK 239 (487)
Q Consensus 167 ah~~~~~g~~f~~~~~~-l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~------~~ 239 (487)
||++.+++ +...+.. +..++...++.++++||||+++ ..++..+++. ..+..+.....+...+. ..
T Consensus 147 ~H~l~~~~--r~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~---~~~~~~~r~~~l~~~~~~~~~~~~~ 219 (702)
T 2p6r_A 147 IHLLDSEK--RGATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEWLDA---DYYVSDWRPVPLVEGVLCEGTLELF 219 (702)
T ss_dssp GGGGGCTT--THHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHHTTC---EEEECCCCSSCEEEEEECSSEEEEE
T ss_pred eeecCCCC--cccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHHhCC---CcccCCCCCccceEEEeeCCeeecc
Confidence 99998876 3344433 3334444568999999999986 3566777652 22222222111111111 01
Q ss_pred C------chhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhC------------------------------CC
Q 011387 240 D------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------------------GI 283 (487)
Q Consensus 240 ~------~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~------------------------------g~ 283 (487)
+ ........+.+.+. .++++||||++++.++.+++.|.+. +.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 220 DGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp ETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred CcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 0 00114555555554 4678999999999999999988753 13
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEE----eC---CCCCHHHHHHHHhccCCCC--C
Q 011387 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN---IPKSMEAFYQESGRAGRDQ--L 354 (487)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~----~~---~p~s~~~y~Qr~GRagR~g--~ 354 (487)
.+.++||+|+.++|..+++.|.+|+.+|||||+++++|||+|++++||+ || .|.|..+|.||+|||||.| .
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~ 377 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDE 377 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCS
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCC
Confidence 5788999999999999999999999999999999999999999999999 66 7899999999999999988 5
Q ss_pred CceEEEEEecchHH
Q 011387 355 PSKSLLYYGMDDRR 368 (487)
Q Consensus 355 ~g~~i~~~~~~d~~ 368 (487)
+|.|+++++..+..
T Consensus 378 ~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 378 RGEAIIIVGKRDRE 391 (702)
T ss_dssp CEEEEEECCGGGHH
T ss_pred CceEEEEecCccHH
Confidence 89999999988743
No 27
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=4.2e-42 Score=381.91 Aligned_cols=317 Identities=19% Similarity=0.254 Sum_probs=189.0
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC--------CCeEEEeCcHHHHHHHHHHHHHHc---
Q 011387 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK--- 101 (487)
Q Consensus 33 ~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~--------~~~~lvl~P~~~L~~q~~~~l~~~--- 101 (487)
.+|+.+|||+|.++++.+++|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 456889999999999999999999999999999999999999765 788999999999999999999885
Q ss_pred -CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhh--h-hcCCccEEEEeccccccccCCCC
Q 011387 102 -GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--H-SRGLLNLVAIDEAHCISSWGHDF 177 (487)
Q Consensus 102 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~--~-~~~~l~~lViDEah~~~~~g~~f 177 (487)
++.+..+.++........... . ..+++++||+. +..+... . ....+++|||||||++...+. +
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~---~---~~~IvI~Tp~~------L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~ 389 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVI---E---DSDIIVVTPQI------LVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-Y 389 (936)
T ss_dssp TTCCEEEECCC-----CCHHHH---H---HCSEEEECHHH------HHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-H
T ss_pred cCceEEEEECCcchhhHHHHhc---c---CCCEEEecHHH------HHHHHHcCccccccCCCEEEEECccccCCCcc-H
Confidence 788888887764433211111 1 15565555554 3333221 1 345689999999999987542 3
Q ss_pred hHHHHHHHHHHHh-----CCCCcEEEEecCCCh----------HHHHHHHHHhcCCCCeEEe---------cCCCCCcce
Q 011387 178 RPSYRKLSSLRNY-----LPDVPILALTATAAP----------KVQKDVMESLCLQNPLVLK---------SSFNRPNLF 233 (487)
Q Consensus 178 ~~~~~~l~~l~~~-----~~~~~~i~lSAT~~~----------~~~~~i~~~l~~~~~~~~~---------~~~~~~~~~ 233 (487)
.... ..+... .+..++++||||+.. .....+...++.. .+.. ....++...
T Consensus 390 ~~i~---~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~--~i~~~~~~~~~l~~~~~~p~~~ 464 (936)
T 4a2w_A 390 NVLM---TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEID 464 (936)
T ss_dssp HHHH---HHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHSCCCCEE
T ss_pred HHHH---HHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCc--eeecccccHHHHHHhccCCcce
Confidence 3222 222222 456789999999953 1122223333221 0000 001111111
Q ss_pred EEEEee---------------------------------------C----------------------------------
Q 011387 234 YEVRYK---------------------------------------D---------------------------------- 240 (487)
Q Consensus 234 ~~v~~~---------------------------------------~---------------------------------- 240 (487)
+..... .
T Consensus 465 ~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~ 544 (936)
T 4a2w_A 465 VRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFI 544 (936)
T ss_dssp EEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred EEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 111000 0
Q ss_pred -----------------------------------------------------------------chhhHHHHHHHHHHh
Q 011387 241 -----------------------------------------------------------------LLDDAYADLCSVLKA 255 (487)
Q Consensus 241 -----------------------------------------------------------------~~~~~~~~l~~~l~~ 255 (487)
....++..|.+++..
T Consensus 545 ~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~ 624 (936)
T 4a2w_A 545 CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDD 624 (936)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH
Confidence 001234445555554
Q ss_pred ----CCCceEEEEecccchHHHHHHHHHhC------------CCceEEecCCCCHHHHHHHHHHHhc-CCCcEEEEcCcc
Q 011387 256 ----NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAF 318 (487)
Q Consensus 256 ----~~~~~~iIf~~s~~~~~~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~vLVaT~~~ 318 (487)
.++.++||||++++.++.+++.|.+. |.....+||+|++.+|.++++.|++ |+++|||||+++
T Consensus 625 ~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~ 704 (936)
T 4a2w_A 625 AYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVA 704 (936)
T ss_dssp TTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC-
T ss_pred HhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCch
Confidence 35689999999999999999999986 5566677999999999999999998 999999999999
Q ss_pred ccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHH
Q 011387 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (487)
Q Consensus 319 ~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~ 369 (487)
++|||+|++++|||||+|+|...|+||+|| ||. +.|.++++++..+...
T Consensus 705 ~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 705 DEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (936)
T ss_dssp -----CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHHH
T ss_pred hcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHH
Confidence 999999999999999999999999999999 999 7899999998876654
No 28
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=8.8e-42 Score=371.57 Aligned_cols=325 Identities=21% Similarity=0.278 Sum_probs=244.7
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCCEEEEcCCCchhhHHHHHhHhc----CCCeEEEeCcHHHH
Q 011387 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIAL 90 (487)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~-~l~~~dvlv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L 90 (487)
.|.++++++.+.+.+++ +|+..|+|+|.++++. +.++++++++||||||||++|.+|++. .+++++|++|+++|
T Consensus 2 ~f~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raL 80 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKAL 80 (720)
T ss_dssp BGGGCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGG
T ss_pred cHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH
Confidence 36778899999999998 7999999999999998 889999999999999999999998873 47899999999999
Q ss_pred HHHHHHHHHH---cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCCccEEEEe
Q 011387 91 MENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAID 165 (487)
Q Consensus 91 ~~q~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l~~lViD 165 (487)
+.|++++++. +|+.+..+.++....... . ...+++++||+.+ ..+.. ......++++|||
T Consensus 81 a~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-----~----~~~~Iiv~Tpe~l------~~~~~~~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 81 AEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-----L----GKYDIIIATAEKF------DSLLRHGSSWIKDVKILVAD 145 (720)
T ss_dssp HHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-----G----GGCSEEEECHHHH------HHHHHHTCTTGGGEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCCccccc-----c----CCCCEEEECHHHH------HHHHHcChhhhhcCCEEEEE
Confidence 9999999864 477887777654332210 0 1356766666544 33322 2225578999999
Q ss_pred ccccccccCCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEE------e
Q 011387 166 EAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR------Y 238 (487)
Q Consensus 166 Eah~~~~~g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~------~ 238 (487)
|||++.+++ +...+..+ ...+ ++.+++++|||+++. .++..+++.. .+........+...+. .
T Consensus 146 E~H~l~~~~--r~~~~~~l---l~~l~~~~~ii~lSATl~n~--~~~~~~l~~~---~~~~~~rp~~l~~~~~~~~~~~~ 215 (720)
T 2zj8_A 146 EIHLIGSRD--RGATLEVI---LAHMLGKAQIIGLSATIGNP--EELAEWLNAE---LIVSDWRPVKLRRGVFYQGFVTW 215 (720)
T ss_dssp TGGGGGCTT--THHHHHHH---HHHHBTTBEEEEEECCCSCH--HHHHHHTTEE---EEECCCCSSEEEEEEEETTEEEE
T ss_pred CCcccCCCc--ccHHHHHH---HHHhhcCCeEEEEcCCcCCH--HHHHHHhCCc---ccCCCCCCCcceEEEEeCCeeec
Confidence 999998765 33333333 3322 278999999999763 5666776531 1222211111111111 1
Q ss_pred eC----chhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhC------------------C--------------
Q 011387 239 KD----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------G-------------- 282 (487)
Q Consensus 239 ~~----~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~------------------g-------------- 282 (487)
.. ........+.+.+. .++++||||+|++.++.++..|.+. +
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~ 293 (720)
T 2zj8_A 216 EDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAI 293 (720)
T ss_dssp TTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 11 01233444455444 4578999999999999999998753 1
Q ss_pred -CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEE----eC----CCCCHHHHHHHHhccCCCC
Q 011387 283 -ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN----IPKSMEAFYQESGRAGRDQ 353 (487)
Q Consensus 283 -~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~----~~----~p~s~~~y~Qr~GRagR~g 353 (487)
..+..+||+|+.++|..+++.|.+|.++|||||+++++|||+|++++||+ || .|.|..+|.||+|||||.|
T Consensus 294 ~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g 373 (720)
T 2zj8_A 294 RGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPK 373 (720)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTT
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCC
Confidence 24899999999999999999999999999999999999999999999998 66 5899999999999999988
Q ss_pred --CCceEEEEEecchHH
Q 011387 354 --LPSKSLLYYGMDDRR 368 (487)
Q Consensus 354 --~~g~~i~~~~~~d~~ 368 (487)
..|.|+++++..+..
T Consensus 374 ~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 374 YDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp TCSEEEEEEECSSSCHH
T ss_pred CCCCceEEEEecCccHH
Confidence 578999999988743
No 29
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.6e-41 Score=358.80 Aligned_cols=315 Identities=20% Similarity=0.235 Sum_probs=206.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC--------CCeEEEeCcHHHHHHHHHHHHHHc----CCce
Q 011387 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----GIAG 105 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~--------~~~~lvl~P~~~L~~q~~~~l~~~----~~~~ 105 (487)
+|||+|.++++.+++|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++ ++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 5999999999999999999999999999999999998754 788999999999999999999885 7888
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhh--h-hcCCccEEEEeccccccccCCCChHHHH
Q 011387 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--H-SRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (487)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~--~-~~~~l~~lViDEah~~~~~g~~f~~~~~ 182 (487)
..+.++........... . ..+++++||+. +..+... . ....++++||||||++.+++. ++...
T Consensus 84 ~~~~g~~~~~~~~~~~~---~---~~~i~v~T~~~------l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~- 149 (555)
T 3tbk_A 84 ASISGATSDSVSVQHII---E---DNDIIILTPQI------LVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIM- 149 (555)
T ss_dssp EEECTTTGGGSCHHHHH---H---HCSEEEECHHH------HHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHH-
T ss_pred EEEcCCCcchhhHHHHh---c---CCCEEEECHHH------HHHHHhcCcccccccCCEEEEECccccCCcch-HHHHH-
Confidence 88877764433211111 1 15565555554 3333222 2 455689999999999988652 33222
Q ss_pred HHHHHHHh-C-----CCCcEEEEecCCChHH----------HHHHHHHhcCCCCeEEe---------cCCCCCcceEEEE
Q 011387 183 KLSSLRNY-L-----PDVPILALTATAAPKV----------QKDVMESLCLQNPLVLK---------SSFNRPNLFYEVR 237 (487)
Q Consensus 183 ~l~~l~~~-~-----~~~~~i~lSAT~~~~~----------~~~i~~~l~~~~~~~~~---------~~~~~~~~~~~v~ 237 (487)
..+... . +..+++++|||+.... ...+...++.. .+.. ....++...+...
T Consensus 150 --~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 225 (555)
T 3tbk_A 150 --FRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDAS--VIATVRDNVAELEQVVYKPQKISRKV 225 (555)
T ss_dssp --HHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCS--EEECCCSCHHHHHTTCCCCCEEEEEC
T ss_pred --HHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCe--eeeccccCHHHHHhhcCCCceEEEEe
Confidence 122222 1 4678999999996531 12223333211 1111 1112222222111
Q ss_pred eeC-----------------------------------------------------------------------------
Q 011387 238 YKD----------------------------------------------------------------------------- 240 (487)
Q Consensus 238 ~~~----------------------------------------------------------------------------- 240 (487)
...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (555)
T 3tbk_A 226 ASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTS 305 (555)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHH
T ss_pred cCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHH
Confidence 100
Q ss_pred --------------------------------------------------------------chhhHHHHHHHHHHh---
Q 011387 241 --------------------------------------------------------------LLDDAYADLCSVLKA--- 255 (487)
Q Consensus 241 --------------------------------------------------------------~~~~~~~~l~~~l~~--- 255 (487)
....++..|.+++..
T Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 385 (555)
T 3tbk_A 306 HLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYH 385 (555)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhc
Confidence 002244445555543
Q ss_pred -CCCceEEEEecccchHHHHHHHHHhCC------------CceEEecCCCCHHHHHHHHHHHhc-CCCcEEEEcCccccc
Q 011387 256 -NGDTCAIVYCLERTTCDELSAYLSAGG------------ISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMG 321 (487)
Q Consensus 256 -~~~~~~iIf~~s~~~~~~l~~~L~~~g------------~~~~~~h~~l~~~~R~~~~~~f~~-g~~~vLVaT~~~~~G 321 (487)
.++.++||||++++.++.+++.|.+.+ .....+||+|++++|.++++.|++ |+++|||||+++++|
T Consensus 386 ~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~G 465 (555)
T 3tbk_A 386 LKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEG 465 (555)
T ss_dssp HCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCC
T ss_pred cCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcC
Confidence 466899999999999999999999864 344556679999999999999999 999999999999999
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHH
Q 011387 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 372 (487)
Q Consensus 322 iDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~ 372 (487)
||+|++++|||||+|+|+..|+||+|| ||. ++|.+++|+++.+......
T Consensus 466 lDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~ 514 (555)
T 3tbk_A 466 IDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEK 514 (555)
T ss_dssp EETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHH
T ss_pred CccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHH
Confidence 999999999999999999999999999 998 8999999999887765543
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-41 Score=372.02 Aligned_cols=321 Identities=18% Similarity=0.203 Sum_probs=237.6
Q ss_pred HHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHHcCCceEE
Q 011387 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (487)
Q Consensus 31 ~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~ 107 (487)
...|||. |+++|.++++.+.+|+++++.||||+|||++|.++++. .+++++|++|+++|+.|+++.+.+....+..
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgl 158 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGL 158 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEE
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEE
Confidence 3457886 99999999999999999999999999999999888764 5889999999999999999999985446666
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH-HhhhhcCCccEEEEeccccccccCCCChHHHHHHHH
Q 011387 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (487)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l-~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~ 186 (487)
+.++... ....+++++||+.+.. .+ ........++++||||||++.+++. ... +..
T Consensus 159 ltGd~~~-------------~~~~~IvV~Tpe~L~~-----~L~~~~~~l~~l~lVViDEaH~l~d~~r--g~~---~e~ 215 (1010)
T 2xgj_A 159 MTGDITI-------------NPDAGCLVMTTEILRS-----MLYRGSEVMREVAWVIFDEVHYMRDKER--GVV---WEE 215 (1010)
T ss_dssp ECSSCEE-------------CTTCSEEEEEHHHHHH-----HHHHTCTTGGGEEEEEEETGGGGGCTTT--HHH---HHH
T ss_pred EeCCCcc-------------CCCCCEEEEcHHHHHH-----HHHcCcchhhcCCEEEEechhhhcccch--hHH---HHH
Confidence 6655432 1235677776664421 12 2223456799999999999998863 322 333
Q ss_pred HHHhCC-CCcEEEEecCCChHHHHHHHHHhc--CCCCe-EEecCCCCCcceEEEEeeC----------------------
Q 011387 187 LRNYLP-DVPILALTATAAPKVQKDVMESLC--LQNPL-VLKSSFNRPNLFYEVRYKD---------------------- 240 (487)
Q Consensus 187 l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~--~~~~~-~~~~~~~~~~~~~~v~~~~---------------------- 240 (487)
+...+| ++++++||||+++.. ++..+++ ...+. ++........+...+....
T Consensus 216 il~~l~~~~~il~LSATi~n~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1010)
T 2xgj_A 216 TIILLPDKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 293 (1010)
T ss_dssp HHHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHH
T ss_pred HHHhcCCCCeEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHH
Confidence 444554 789999999997653 2333332 12222 2222221111211111000
Q ss_pred -------------------------ch-------hhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCc----
Q 011387 241 -------------------------LL-------DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS---- 284 (487)
Q Consensus 241 -------------------------~~-------~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~---- 284 (487)
.. ...+..+...+......++||||+|++.|+.+++.|...++.
T Consensus 294 ~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e 373 (1010)
T 2xgj_A 294 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 373 (1010)
T ss_dssp HHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH
T ss_pred HHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHH
Confidence 00 123344556666666678999999999999999999775442
Q ss_pred -----------------------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcE
Q 011387 285 -----------------------------------CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329 (487)
Q Consensus 285 -----------------------------------~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~ 329 (487)
+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|++++
T Consensus 374 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~v 453 (1010)
T 2xgj_A 374 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTV 453 (1010)
T ss_dssp HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEE
T ss_pred HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceE
Confidence 788999999999999999999999999999999999999999999
Q ss_pred EEE----eCC----CCCHHHHHHHHhccCCCCC--CceEEEEEecc-hHHHHHHHHHhc
Q 011387 330 VCH----FNI----PKSMEAFYQESGRAGRDQL--PSKSLLYYGMD-DRRRMEFILSKN 377 (487)
Q Consensus 330 VI~----~~~----p~s~~~y~Qr~GRagR~g~--~g~~i~~~~~~-d~~~~~~i~~~~ 377 (487)
||+ ||. |.|..+|+||+|||||.|. .|.|++++++. +...+..++...
T Consensus 454 VI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~ 512 (1010)
T 2xgj_A 454 VFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQ 512 (1010)
T ss_dssp EESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCC
T ss_pred EEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCC
Confidence 999 998 8899999999999999996 59999999866 666666665543
No 31
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.5e-42 Score=368.82 Aligned_cols=317 Identities=20% Similarity=0.188 Sum_probs=242.1
Q ss_pred hhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchhhHHHHHhHhcC---CCeEEEeCcHHHHHH
Q 011387 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALME 92 (487)
Q Consensus 22 l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~------~dvlv~apTGsGKTl~~~lp~l~~---~~~~lvl~P~~~L~~ 92 (487)
...++.+.+.+.+|| +||++|+++++.++++ +++++.||||||||++|++|++.. +.+++|++|+++|+.
T Consensus 353 ~~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 353 IEGKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAI 431 (780)
T ss_dssp CCTHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHH
T ss_pred CchHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHH
Confidence 344566666666999 8999999999998865 599999999999999999998764 889999999999999
Q ss_pred HHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccc
Q 011387 93 NQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (487)
Q Consensus 93 q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah 168 (487)
|+.+.++++ ++.+..++++.....+...+..+..+. .+++++||..+ .......+++++||||+|
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~--~~IvVgT~~ll---------~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ--IDVVIGTHALI---------QEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC--CCEEEECTTHH---------HHCCCCSCCCEEEEESCC
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHH---------hhhhhccCCceEEecccc
Confidence 999998874 788999999998888877788787765 67877777533 334456789999999999
Q ss_pred cccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEec-CCCCCcceEEEEeeCchhhHHH
Q 011387 169 CISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAYA 247 (487)
Q Consensus 169 ~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ 247 (487)
++ |...+ ..+....++.++++||||+.+..... ...+..+..++.. ...+..+...+... ....
T Consensus 501 r~---g~~qr------~~l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~~~p~~r~~i~~~~~~~----~~~~ 565 (780)
T 1gm5_A 501 RF---GVKQR------EALMNKGKMVDTLVMSATPIPRSMAL--AFYGDLDVTVIDEMPPGRKEVQTMLVPM----DRVN 565 (780)
T ss_dssp CC--------------CCCCSSSSCCCEEEEESSCCCHHHHH--HHTCCSSCEEECCCCSSCCCCEECCCCS----STHH
T ss_pred hh---hHHHH------HHHHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcceeeeeccCCCCcceEEEEecc----chHH
Confidence 95 32211 12233335788999999998876542 2233223333322 22233333222222 2233
Q ss_pred HHHHHHHh--CCCceEEEEeccc--------chHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011387 248 DLCSVLKA--NGDTCAIVYCLER--------TTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (487)
Q Consensus 248 ~l~~~l~~--~~~~~~iIf~~s~--------~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVa 314 (487)
.+.+.+.. ..+.+++|||++. +.++.+++.|.+ .+..+..+||+|++++|.++++.|.+|+.+||||
T Consensus 566 ~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVa 645 (780)
T 1gm5_A 566 EVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVS 645 (780)
T ss_dssp HHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCC
T ss_pred HHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEE
Confidence 34444433 2567899999966 457888898988 4788999999999999999999999999999999
Q ss_pred cCccccccccCCCcEEEEeCCCC-CHHHHHHHHhccCCCCCCceEEEEEecc
Q 011387 315 TVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (487)
Q Consensus 315 T~~~~~GiDip~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~~~~~~ 365 (487)
|+++++|||+|++++||+++.|. +...|.||+||+||.|++|.|++++++.
T Consensus 646 T~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~ 697 (780)
T 1gm5_A 646 TTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV 697 (780)
T ss_dssp SSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC
T ss_pred CCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC
Confidence 99999999999999999999996 7899999999999999999999999843
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.9e-40 Score=338.96 Aligned_cols=313 Identities=19% Similarity=0.236 Sum_probs=234.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC----CCeEEEeCcHHHHHHHHHHHHHHc-CC---ceEEec
Q 011387 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQVIGLKEK-GI---AGEFLS 109 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~----~~~~lvl~P~~~L~~q~~~~l~~~-~~---~~~~~~ 109 (487)
+|+|+|.++++.++++ ++++.+|||+|||++++++++.. ++++|||+|+++|+.|+.+++.+. +. ....+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEee
Confidence 6999999999999999 99999999999999999887753 889999999999999999999985 55 777787
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhhcCCccEEEEeccccccccCCCChHHHHHHHHH
Q 011387 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (487)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l 187 (487)
++.........+. ..+++++||+.+ .... .......++++|+||||++.... .+. ..+..+
T Consensus 88 g~~~~~~~~~~~~-------~~~ivv~T~~~l------~~~~~~~~~~~~~~~~vIiDEaH~~~~~~-~~~---~~~~~~ 150 (494)
T 1wp9_A 88 GEKSPEERSKAWA-------RAKVIVATPQTI------ENDLLAGRISLEDVSLIVFDEAHRAVGNY-AYV---FIAREY 150 (494)
T ss_dssp SCSCHHHHHHHHH-------HCSEEEECHHHH------HHHHHTTSCCTTSCSEEEEETGGGCSTTC-HHH---HHHHHH
T ss_pred CCcchhhhhhhcc-------CCCEEEecHHHH------HHHHhcCCcchhhceEEEEECCcccCCCC-cHH---HHHHHH
Confidence 7776665433332 156666665544 2222 23346678999999999997532 111 223334
Q ss_pred HHhCCCCcEEEEecCCCh--HHHHHHHHHhcCCCCeEEecC-------CCCCcceEEEEee-------------------
Q 011387 188 RNYLPDVPILALTATAAP--KVQKDVMESLCLQNPLVLKSS-------FNRPNLFYEVRYK------------------- 239 (487)
Q Consensus 188 ~~~~~~~~~i~lSAT~~~--~~~~~i~~~l~~~~~~~~~~~-------~~~~~~~~~v~~~------------------- 239 (487)
....+..++++||||+.. .....+...++...+...... +......+.....
T Consensus 151 ~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (494)
T 1wp9_A 151 KRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDAL 230 (494)
T ss_dssp HHHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 445668899999999983 334455555554322211100 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 011387 240 -------------------------------------------------------------------------------- 239 (487)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (487)
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 310 (494)
T 1wp9_A 231 KPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKA 310 (494)
T ss_dssp HHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhcc
Confidence
Q ss_pred ----------------------------CchhhHHHHHHHHHHh----CCCceEEEEecccchHHHHHHHHHhCCCceEE
Q 011387 240 ----------------------------DLLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAA 287 (487)
Q Consensus 240 ----------------------------~~~~~~~~~l~~~l~~----~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~ 287 (487)
.....++..+.++++. ..+.++||||++++.++.+++.|.+.|+.+..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~ 390 (494)
T 1wp9_A 311 GSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKR 390 (494)
T ss_dssp TCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEE
Confidence 0112244555666655 57889999999999999999999999999999
Q ss_pred ecC--------CCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEE
Q 011387 288 YHA--------GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359 (487)
Q Consensus 288 ~h~--------~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i 359 (487)
+|| +++.++|.++++.|.+|+.+|||||+++++|||+|++++||+++.|+++..|.||+||+||.|. |.++
T Consensus 391 ~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~ 469 (494)
T 1wp9_A 391 FVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVI 469 (494)
T ss_dssp ECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEE
T ss_pred EeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEE
Confidence 999 9999999999999999999999999999999999999999999999999999999999999997 9999
Q ss_pred EEEecchHHH
Q 011387 360 LYYGMDDRRR 369 (487)
Q Consensus 360 ~~~~~~d~~~ 369 (487)
.++.+.+.+.
T Consensus 470 ~l~~~~t~ee 479 (494)
T 1wp9_A 470 ILMAKGTRDE 479 (494)
T ss_dssp EEEETTSHHH
T ss_pred EEEecCCHHH
Confidence 9999887654
No 33
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.8e-40 Score=364.74 Aligned_cols=323 Identities=19% Similarity=0.241 Sum_probs=189.0
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC--------CCeEEEeCcHHHHHHHHHHHHHHc
Q 011387 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK 101 (487)
Q Consensus 30 l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~--------~~~~lvl~P~~~L~~q~~~~l~~~ 101 (487)
....+|+..|||+|.++++.+++|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++
T Consensus 240 ~~~~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 240 PPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp --------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred chhhcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 334578899999999999999999999999999999999999998754 789999999999999999999885
Q ss_pred ----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhh--h-hcCCccEEEEeccccccccC
Q 011387 102 ----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--H-SRGLLNLVAIDEAHCISSWG 174 (487)
Q Consensus 102 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~--~-~~~~l~~lViDEah~~~~~g 174 (487)
++.+..++++......... +.. ..+++++||+. +...... . ....+++|||||||++...+
T Consensus 320 ~~~~~~~v~~~~g~~~~~~~~~~---~~~---~~~Ivv~Tp~~------l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~ 387 (797)
T 4a2q_A 320 FERQGYSVQGISGENFSNVSVEK---VIE---DSDIIVVTPQI------LVNSFEDGTLTSLSIFTLMIFDECHNTTGNH 387 (797)
T ss_dssp HGGGTCCEEEECCC-----CHHH---HHH---TCSEEEECHHH------HHHHHHSSSCCCGGGCSEEEETTGGGCSTTS
T ss_pred cccCCceEEEEeCCcchhhhHHH---hhC---CCCEEEEchHH------HHHHHHhccccccccCCEEEEECccccCCCc
Confidence 8888888887754432211 111 25666665554 3333221 2 34568999999999998744
Q ss_pred CCChHHHHHHHHHHHh-----CCCCcEEEEecCCCh----------HHHHHHHHHhcCCCCeE-------EecCCCCCcc
Q 011387 175 HDFRPSYRKLSSLRNY-----LPDVPILALTATAAP----------KVQKDVMESLCLQNPLV-------LKSSFNRPNL 232 (487)
Q Consensus 175 ~~f~~~~~~l~~l~~~-----~~~~~~i~lSAT~~~----------~~~~~i~~~l~~~~~~~-------~~~~~~~~~~ 232 (487)
. +.... ..+... .+..++++||||+.. .....+...++...... +.....++..
T Consensus 388 ~-~~~i~---~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~ 463 (797)
T 4a2q_A 388 P-YNVLM---TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEI 463 (797)
T ss_dssp H-HHHHH---HHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCC
T ss_pred c-HHHHH---HHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCce
Confidence 2 22222 222222 456889999999963 12222333332210000 0000111111
Q ss_pred eEEEEee---------------------------------------C---------------------------------
Q 011387 233 FYEVRYK---------------------------------------D--------------------------------- 240 (487)
Q Consensus 233 ~~~v~~~---------------------------------------~--------------------------------- 240 (487)
.+..... .
T Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 543 (797)
T 4a2q_A 464 DVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALF 543 (797)
T ss_dssp EEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHH
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 1111000 0
Q ss_pred ------------------------------------------------------------------chhhHHHHHHHHHH
Q 011387 241 ------------------------------------------------------------------LLDDAYADLCSVLK 254 (487)
Q Consensus 241 ------------------------------------------------------------------~~~~~~~~l~~~l~ 254 (487)
....++..|.+++.
T Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~ 623 (797)
T 4a2q_A 544 ICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILD 623 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHH
Confidence 00124444555554
Q ss_pred h----CCCceEEEEecccchHHHHHHHHHhC------------CCceEEecCCCCHHHHHHHHHHHhc-CCCcEEEEcCc
Q 011387 255 A----NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVA 317 (487)
Q Consensus 255 ~----~~~~~~iIf~~s~~~~~~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~vLVaT~~ 317 (487)
. ..+.++||||++++.++.+++.|++. |.....+||+|++++|.++++.|++ |+++|||||++
T Consensus 624 ~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~ 703 (797)
T 4a2q_A 624 DAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV 703 (797)
T ss_dssp HHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC
T ss_pred HHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCc
Confidence 3 56789999999999999999999874 5566778999999999999999999 99999999999
Q ss_pred cccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHH
Q 011387 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (487)
Q Consensus 318 ~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~ 370 (487)
+++|||+|++++|||||+|+|+..|+||+|| ||. ++|.++++++..+....
T Consensus 704 ~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 704 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 754 (797)
T ss_dssp -------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHHHH
T ss_pred hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHHH
Confidence 9999999999999999999999999999999 999 89999999988876543
No 34
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=5.1e-39 Score=362.06 Aligned_cols=324 Identities=20% Similarity=0.197 Sum_probs=252.0
Q ss_pred CCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHc----CC--CEEEEcCCCchhhHHHHHhHh---cCCCeEEEeCcH
Q 011387 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS----GR--DCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPL 87 (487)
Q Consensus 17 ~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~----~~--dvlv~apTGsGKTl~~~lp~l---~~~~~~lvl~P~ 87 (487)
..++.......+.+...|||+ +||+|.++++.+++ ++ |+++++|||+|||++++++++ ..+.+++|++||
T Consensus 583 g~~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt 661 (1151)
T 2eyq_A 583 GFAFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 661 (1151)
T ss_dssp CCCCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred CCCCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEech
Confidence 445667777888888889997 79999999999886 65 999999999999999987764 458899999999
Q ss_pred HHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEE
Q 011387 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (487)
Q Consensus 88 ~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lV 163 (487)
++|+.|+.+.+++. ++....+++..+..........+..+. .+++++||..+ .+.....+++++|
T Consensus 662 ~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~--~dIvV~T~~ll---------~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK--IDILIGTHKLL---------QSDVKFKDLGLLI 730 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC--CSEEEECTHHH---------HSCCCCSSEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHH---------hCCccccccceEE
Confidence 99999999999863 567788888888877777777777765 77877777533 2334567799999
Q ss_pred EeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecC-CCCCcceEEEEeeCch
Q 011387 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKDLL 242 (487)
Q Consensus 164 iDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~v~~~~~~ 242 (487)
|||||++ |.. .... +....++.++++||||+.+....... .++.+...+... ..+..+...+.... .
T Consensus 731 iDEaH~~---g~~---~~~~---l~~l~~~~~vl~lSATp~p~~l~~~~--~~~~~~~~i~~~~~~r~~i~~~~~~~~-~ 798 (1151)
T 2eyq_A 731 VDEEHRF---GVR---HKER---IKAMRANVDILTLTATPIPRTLNMAM--SGMRDLSIIATPPARRLAVKTFVREYD-S 798 (1151)
T ss_dssp EESGGGS---CHH---HHHH---HHHHHTTSEEEEEESSCCCHHHHHHH--TTTSEEEECCCCCCBCBCEEEEEEECC-H
T ss_pred EechHhc---ChH---HHHH---HHHhcCCCCEEEEcCCCChhhHHHHH--hcCCCceEEecCCCCccccEEEEecCC-H
Confidence 9999994 321 1122 33334578899999999888765333 344444333322 22333333333322 1
Q ss_pred hhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcccc
Q 011387 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (487)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~ 320 (487)
......+...+ ..+++++|||++++.++.+++.|++. +..+..+||+|++++|.++++.|.+|+.+|||||+++++
T Consensus 799 ~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~ 876 (1151)
T 2eyq_A 799 MVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 876 (1151)
T ss_dssp HHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGG
T ss_pred HHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCccee
Confidence 22233333332 25678999999999999999999987 789999999999999999999999999999999999999
Q ss_pred ccccCCCcEEEEeCC-CCCHHHHHHHHhccCCCCCCceEEEEEecch
Q 011387 321 GIDRKDVRLVCHFNI-PKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (487)
Q Consensus 321 GiDip~v~~VI~~~~-p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d 366 (487)
|||+|++++||+++. +.++..|+||+||+||.|+.|.|++++.+.+
T Consensus 877 GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 877 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp GSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred eecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 999999999999988 5699999999999999999999999987653
No 35
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.5e-39 Score=344.77 Aligned_cols=318 Identities=18% Similarity=0.181 Sum_probs=232.2
Q ss_pred HHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH----cCCc
Q 011387 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE----KGIA 104 (487)
Q Consensus 32 ~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~----~~~~ 104 (487)
+.+|+ .|+|+|..+++.+++|+ ++.|+||+|||++|.+|++. .+..++||+|+++|+.|..+++.. +|+.
T Consensus 78 r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~ 154 (844)
T 1tf5_A 78 RVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLT 154 (844)
T ss_dssp HHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 46799 89999999999999999 99999999999999999983 477899999999999998888765 5889
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh-------hhhcCCccEEEEecccccc-ccCCC
Q 011387 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-------IHSRGLLNLVAIDEAHCIS-SWGHD 176 (487)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~-------~~~~~~l~~lViDEah~~~-~~g~~ 176 (487)
+..+.++.....+...+. .+|+|+||.-++- +.+.. ....+.+.++||||||.++ +.+..
T Consensus 155 v~~i~gg~~~~~r~~~~~--------~dIv~gTpgrlgf----D~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~t 222 (844)
T 1tf5_A 155 VGLNLNSMSKDEKREAYA--------ADITYSTNNELGF----DYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEART 222 (844)
T ss_dssp EEECCTTSCHHHHHHHHH--------SSEEEEEHHHHHH----HHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTC
T ss_pred EEEEeCCCCHHHHHHhcC--------CCEEEECchhhhH----HHHHHhhhcchhhhcccCCCEEEECchhhhhhhcccc
Confidence 988888877655433221 5565555443311 12222 2345678999999999987 55421
Q ss_pred ----------ChHHHHHHHHHHHhCC----------CCcEE-----------------EEecCCCh---HHHHHHHH-Hh
Q 011387 177 ----------FRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAP---KVQKDVME-SL 215 (487)
Q Consensus 177 ----------f~~~~~~l~~l~~~~~----------~~~~i-----------------~lSAT~~~---~~~~~i~~-~l 215 (487)
-...|..+..+...+| ..+++ ++|||.+. .+...+.. .+
T Consensus 223 plIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l 302 (844)
T 1tf5_A 223 PLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVA 302 (844)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHT
T ss_pred chhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHH
Confidence 0124556666666665 34454 67777542 11111101 01
Q ss_pred cCCC----------------------------------------------------------------------------
Q 011387 216 CLQN---------------------------------------------------------------------------- 219 (487)
Q Consensus 216 ~~~~---------------------------------------------------------------------------- 219 (487)
...+
T Consensus 303 ~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~ 382 (844)
T 1tf5_A 303 MQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEE 382 (844)
T ss_dssp CCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHH
T ss_pred hhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHH
Confidence 0000
Q ss_pred -------CeEEecCCCCCcceEE---EEeeCchhhHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhCCCceEE
Q 011387 220 -------PLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAA 287 (487)
Q Consensus 220 -------~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~ 287 (487)
..++..+.++|..... +.+. ...+++..+.+.+.. ..+.++||||+|++.++.+++.|.+.|+++..
T Consensus 383 e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~-~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~v 461 (844)
T 1tf5_A 383 EFRNIYNMQVVTIPTNRPVVRDDRPDLIYR-TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQV 461 (844)
T ss_dssp HHHHHHCCCEEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEE
T ss_pred HHHHHhCCceEEecCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEE
Confidence 0011122334443321 1222 235678888887764 35678999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccC--------CCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEE
Q 011387 288 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359 (487)
Q Consensus 288 ~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip--------~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i 359 (487)
+||++.+.+|..+.+.|+.| .|+|||++++||+|++ ++.+||+|+.|.|.+.|.||+||+||.|.+|.++
T Consensus 462 Lhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~ 539 (844)
T 1tf5_A 462 LNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQ 539 (844)
T ss_dssp ECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred eeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEE
Confidence 99999888887666665555 6999999999999999 7889999999999999999999999999999999
Q ss_pred EEEecchH
Q 011387 360 LYYGMDDR 367 (487)
Q Consensus 360 ~~~~~~d~ 367 (487)
+|++.+|.
T Consensus 540 ~~vs~eD~ 547 (844)
T 1tf5_A 540 FYLSMEDE 547 (844)
T ss_dssp EEEETTSS
T ss_pred EEecHHHH
Confidence 99998764
No 36
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=8.4e-41 Score=374.51 Aligned_cols=325 Identities=16% Similarity=0.221 Sum_probs=238.0
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHH
Q 011387 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLK 99 (487)
Q Consensus 24 ~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~ 99 (487)
+++.+.+.+.+||. | ++|.++++.+++|+|+++.||||||||+ |.+|++. .+++++|++||++|+.|+.+.++
T Consensus 44 ~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 44 KEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp HHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHH
Confidence 34557777779999 9 9999999999999999999999999998 8888775 37899999999999999999998
Q ss_pred Hc----CC----ceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEecccccc
Q 011387 100 EK----GI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (487)
Q Consensus 100 ~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~ 171 (487)
++ ++ .+..+.++.....+......+.. .+++++| |+++..+... ++.++++||||||+++
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~----~~IlV~T------P~~L~~~l~~--L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN----FKIVITT------TQFLSKHYRE--LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----CSEEEEE------HHHHHHCSTT--SCCCSEEEESCHHHHH
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----CCEEEEc------HHHHHHHHHH--hccCCEEEEeChhhhh
Confidence 74 45 67777777766654444444433 4565555 4544333222 5579999999999999
Q ss_pred ccCCCChHHHHHHHHHH----Hh-CCCCcEEEEecCCChHHHH---HHHH-HhcCCCCeEEecCCCCCcceEEEEeeCch
Q 011387 172 SWGHDFRPSYRKLSSLR----NY-LPDVPILALTATAAPKVQK---DVME-SLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242 (487)
Q Consensus 172 ~~g~~f~~~~~~l~~l~----~~-~~~~~~i~lSAT~~~~~~~---~i~~-~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 242 (487)
+||++++..+..++... .. .+..+++++|||+++. .. .+.. ..... +.......+++...+..
T Consensus 189 ~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~---v~~~~~~~~~i~~~~~~---- 260 (1054)
T 1gku_B 189 KASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFD---IGSSRITVRNVEDVAVN---- 260 (1054)
T ss_dssp TSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCC---CSCCEECCCCEEEEEES----
T ss_pred hccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEE---ccCcccCcCCceEEEec----
Confidence 99866665554432100 00 1357899999999876 21 1222 11111 01111223444444332
Q ss_pred hhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEE----cCcc
Q 011387 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA----TVAF 318 (487)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVa----T~~~ 318 (487)
.++...|.++++.. +.++||||+|++.++.+++.|++. +.+..+||++. ++++.|++|+.+|||| |+++
T Consensus 261 ~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~ 333 (1054)
T 1gku_B 261 DESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTL 333 (1054)
T ss_dssp CCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC-----
T ss_pred hhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCee
Confidence 23445566666654 467999999999999999999988 99999999983 7889999999999999 9999
Q ss_pred ccccccCCC-cEEEEeCCC-------------------------------------------------------------
Q 011387 319 GMGIDRKDV-RLVCHFNIP------------------------------------------------------------- 336 (487)
Q Consensus 319 ~~GiDip~v-~~VI~~~~p------------------------------------------------------------- 336 (487)
++|||+|+| ++|||+|+|
T Consensus 334 ~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 413 (1054)
T 1gku_B 334 VRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKD 413 (1054)
T ss_dssp -CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSS
T ss_pred EeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999999996 999999999
Q ss_pred ----------CCHHHHHHHHhccCCCCCCc--eEEEEEecchHHHHHHHHHhcc
Q 011387 337 ----------KSMEAFYQESGRAGRDQLPS--KSLLYYGMDDRRRMEFILSKNQ 378 (487)
Q Consensus 337 ----------~s~~~y~Qr~GRagR~g~~g--~~i~~~~~~d~~~~~~i~~~~~ 378 (487)
.+..+|+||+|||||.|..| .++.++..+|...+..+.+...
T Consensus 414 ~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~ 467 (1054)
T 1gku_B 414 VVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAK 467 (1054)
T ss_dssp SEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHH
T ss_pred eeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHh
Confidence 79999999999999987776 4888888888877777766544
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.5e-39 Score=374.44 Aligned_cols=332 Identities=19% Similarity=0.217 Sum_probs=240.4
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHc-CCCEEEEcCCCchhhHHHHHhHhcC-----CCeEEEeCcHHHHHHHHHHHH
Q 011387 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGL 98 (487)
Q Consensus 25 ~~~~~l~~~fg~~~~~~~Q~~~i~~~l~-~~dvlv~apTGsGKTl~~~lp~l~~-----~~~~lvl~P~~~L~~q~~~~l 98 (487)
...+.+.. .+|+.|+|+|.++++.++. ++++++.||||||||++|.+|++.. ++++||++|+++|+.|.++.|
T Consensus 914 ~~~e~l~~-~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~ 992 (1724)
T 4f92_B 914 SAFESLYQ-DKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDW 992 (1724)
T ss_dssp HHHHTTTT-TTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHH
Confidence 33444433 2789999999999999986 4789999999999999999998753 678999999999999999998
Q ss_pred HH-----cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhh----hhcCCccEEEEecccc
Q 011387 99 KE-----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGLLNLVAIDEAHC 169 (487)
Q Consensus 99 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~----~~~~~l~~lViDEah~ 169 (487)
++ .|+.+..+.++...... . .. ..+++++|||. ++.+.+. .....++++|+||+|.
T Consensus 993 ~~~f~~~~g~~V~~ltGd~~~~~~--~---~~----~~~IiV~TPEk------ld~llr~~~~~~~l~~v~lvViDE~H~ 1057 (1724)
T 4f92_B 993 YEKFQDRLNKKVVLLTGETSTDLK--L---LG----KGNIIISTPEK------WDILSRRWKQRKNVQNINLFVVDEVHL 1057 (1724)
T ss_dssp HHHHTTTSCCCEEECCSCHHHHHH--H---HH----HCSEEEECHHH------HHHHHTTTTTCHHHHSCSEEEECCGGG
T ss_pred HHHhchhcCCEEEEEECCCCcchh--h---cC----CCCEEEECHHH------HHHHHhCcccccccceeeEEEeechhh
Confidence 75 36667776665433221 1 11 15676666554 3333321 2245699999999999
Q ss_pred ccccCCCChHHHH----HHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHhcCCCCeEEec-CCCCCc-ceEEEEeeCch
Q 011387 170 ISSWGHDFRPSYR----KLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPN-LFYEVRYKDLL 242 (487)
Q Consensus 170 ~~~~g~~f~~~~~----~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~-~~~~v~~~~~~ 242 (487)
+.+. ..+.+. .+..+.... +++++++||||.++. .++.++++......+.. +..||. +...+......
T Consensus 1058 l~d~---rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~--~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~ 1132 (1724)
T 4f92_B 1058 IGGE---NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA--KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNIS 1132 (1724)
T ss_dssp GGST---THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH--HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCC
T ss_pred cCCC---CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH--HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCC
Confidence 8763 233332 333333333 378999999999764 67889998765544332 223332 33322222111
Q ss_pred --hhH----HHHHHHHHH-hCCCceEEEEecccchHHHHHHHHHhC----------------------------------
Q 011387 243 --DDA----YADLCSVLK-ANGDTCAIVYCLERTTCDELSAYLSAG---------------------------------- 281 (487)
Q Consensus 243 --~~~----~~~l~~~l~-~~~~~~~iIf~~s~~~~~~l~~~L~~~---------------------------------- 281 (487)
... ...+...+. ...+.++||||+|++.|+.++..|...
T Consensus 1133 ~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l 1212 (1724)
T 4f92_B 1133 HTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETL 1212 (1724)
T ss_dssp SHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHH
T ss_pred CchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHH
Confidence 111 122233333 346788999999999999988776421
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEE----------eCCCCCHHHHHHHHhccCC
Q 011387 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----------FNIPKSMEAFYQESGRAGR 351 (487)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~----------~~~p~s~~~y~Qr~GRagR 351 (487)
...+++|||||++++|..+++.|.+|.++|||||+++++|||+|+.++||. ...|.+..+|.||+|||||
T Consensus 1213 ~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR 1292 (1724)
T 4f92_B 1213 LNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR 1292 (1724)
T ss_dssp HTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCC
T ss_pred hCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccC
Confidence 125789999999999999999999999999999999999999999999983 3346799999999999999
Q ss_pred CCC--CceEEEEEecchHHHHHHHHHhc
Q 011387 352 DQL--PSKSLLYYGMDDRRRMEFILSKN 377 (487)
Q Consensus 352 ~g~--~g~~i~~~~~~d~~~~~~i~~~~ 377 (487)
.|. .|.|++++...+...++.++...
T Consensus 1293 ~g~d~~G~avll~~~~~~~~~~~ll~~~ 1320 (1724)
T 4f92_B 1293 PLQDDEGRCVIMCQGSKKDFFKKFLYEP 1320 (1724)
T ss_dssp TTTCSCEEEEEEEEGGGHHHHHHHTTSC
T ss_pred CCCCCceEEEEEecchHHHHHHHHhCCC
Confidence 986 78999999999998888887654
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.2e-39 Score=374.80 Aligned_cols=328 Identities=19% Similarity=0.229 Sum_probs=235.8
Q ss_pred HHHHHc-CCCCCcHHHHHHHHHHH-cCCCEEEEcCCCchhhHHHHHhHhc--------------CCCeEEEeCcHHHHHH
Q 011387 29 LLRWHF-GHAQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPALA--------------KPGIVLVVSPLIALME 92 (487)
Q Consensus 29 ~l~~~f-g~~~~~~~Q~~~i~~~l-~~~dvlv~apTGsGKTl~~~lp~l~--------------~~~~~lvl~P~~~L~~ 92 (487)
..+..| ||++|+++|.++++.++ +++|++++||||||||++|.++++. .+.++|+++|+++|++
T Consensus 69 ~~~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~ 148 (1724)
T 4f92_B 69 YAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQ 148 (1724)
T ss_dssp GGSTTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHH
Confidence 344456 79999999999999887 4789999999999999999999863 2568999999999999
Q ss_pred HHHHHHHH----cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh----hhhcCCccEEEE
Q 011387 93 NQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK----IHSRGLLNLVAI 164 (487)
Q Consensus 93 q~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~----~~~~~~l~~lVi 164 (487)
|+++.|++ +|+.+..++++....... ....+++++|||.+ +.+.. ....+.++++||
T Consensus 149 e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---------~~~~~IlVtTpEkl------d~llr~~~~~~~l~~v~~vIi 213 (1724)
T 4f92_B 149 EMVGSFGKRLATYGITVAELTGDHQLCKEE---------ISATQIIVCTPEKW------DIITRKGGERTYTQLVRLIIL 213 (1724)
T ss_dssp HHHHHHHHHHTTTTCCEEECCSSCSSCCTT---------GGGCSEEEECHHHH------HHHTTSSTTHHHHTTEEEEEE
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCCCCccc---------cCCCCEEEECHHHH------HHHHcCCccchhhcCcCEEEE
Confidence 99999876 477888777765432110 11367777777643 22211 112467999999
Q ss_pred eccccccccCCCChHHHHH--HHHH----HHhCCCCcEEEEecCCChHHHHHHHHHhcCCCC--eEEecCCCCC-cceEE
Q 011387 165 DEAHCISSWGHDFRPSYRK--LSSL----RNYLPDVPILALTATAAPKVQKDVMESLCLQNP--LVLKSSFNRP-NLFYE 235 (487)
Q Consensus 165 DEah~~~~~g~~f~~~~~~--l~~l----~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~--~~~~~~~~~~-~~~~~ 235 (487)
||+|.+.+ -|..... +.++ ...-+++++++||||.++. .++.++++...+ ..+..+..|| .+...
T Consensus 214 DEvH~l~d----~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~--~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~ 287 (1724)
T 4f92_B 214 DEIHLLHD----DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY--EDVATFLRVDPAKGLFYFDNSFRPVPLEQT 287 (1724)
T ss_dssp TTGGGGGS----TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH--HHHHHHTTCCHHHHEEECCGGGCSSCEEEE
T ss_pred ecchhcCC----ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH--HHHHHHhCCCCCCCeEEECCCCccCccEEE
Confidence 99998864 2332211 1222 2234588999999999764 567888875422 1222222233 23222
Q ss_pred EEee--CchhhHHHH----HHHHHHhC-CCceEEEEecccchHHHHHHHHHhC---------------------------
Q 011387 236 VRYK--DLLDDAYAD----LCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAG--------------------------- 281 (487)
Q Consensus 236 v~~~--~~~~~~~~~----l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~--------------------------- 281 (487)
+... ......... +.+.+... .++++||||+||+.|+.+|+.|.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (1724)
T 4f92_B 288 YVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQ 367 (1724)
T ss_dssp CCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSC
T ss_pred EeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcc
Confidence 2111 111122222 22333332 5678999999999999999888641
Q ss_pred ----------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEE----eC------CCCCHHH
Q 011387 282 ----------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN------IPKSMEA 341 (487)
Q Consensus 282 ----------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~----~~------~p~s~~~ 341 (487)
...++++||||+.++|..+++.|++|.++|||||+++++|||+|.+++||+ |+ .|.+..+
T Consensus 368 ~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~ 447 (1724)
T 4f92_B 368 CKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALD 447 (1724)
T ss_dssp CSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHH
T ss_pred cccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHH
Confidence 124789999999999999999999999999999999999999999999996 43 3568999
Q ss_pred HHHHHhccCCCC--CCceEEEEEecchHHHHHHHHHhc
Q 011387 342 FYQESGRAGRDQ--LPSKSLLYYGMDDRRRMEFILSKN 377 (487)
Q Consensus 342 y~Qr~GRagR~g--~~g~~i~~~~~~d~~~~~~i~~~~ 377 (487)
|.||+|||||.| ..|.++++.+..+......++...
T Consensus 448 ~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~ 485 (1724)
T 4f92_B 448 ILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQ 485 (1724)
T ss_dssp HHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTC
T ss_pred HHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCC
Confidence 999999999987 478999999999888777776653
No 39
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.8e-39 Score=334.02 Aligned_cols=283 Identities=13% Similarity=0.085 Sum_probs=202.7
Q ss_pred CCCCCcHHHHHHHHHHHcCCCE-EEEcCCCchhhHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEec
Q 011387 35 GHAQFRDKQLDAIQAVLSGRDC-FCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (487)
Q Consensus 35 g~~~~~~~Q~~~i~~~l~~~dv-lv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~ 109 (487)
|+.+++|.|+ +|+.+++++++ ++.||||||||++|++|++. .+.+++|++|+++|+.|+.+.+.... .....
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~~--v~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGLP--IRYQT 77 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC--EEECC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCce--eeeee
Confidence 7889999986 79999999887 88999999999999999864 47799999999999999999886432 22211
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhH-HHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHH
Q 011387 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (487)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~-~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~ 188 (487)
..... ...+...+.+ .|++.+ ..+.......+++++||||||++ +.+ +......+ ...
T Consensus 78 ~~~~~-----------~~~~~~~i~~------~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~--~~~~~~~~-~~~ 136 (451)
T 2jlq_A 78 PAVKS-----------DHTGREIVDL------MCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPC--SVAARGYI-STR 136 (451)
T ss_dssp TTCSC-----------CCCSSCCEEE------EEHHHHHHHHHHCSCCCCCSEEEEETTTCC-SHH--HHHHHHHH-HHH
T ss_pred ccccc-----------cCCCCceEEE------EChHHHHHHhhCcccccCCCEEEEeCCccC-Ccc--hHHHHHHH-HHh
Confidence 11100 0111233433 344433 33444455678999999999987 222 22211112 223
Q ss_pred HhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEeccc
Q 011387 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268 (487)
Q Consensus 189 ~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~ 268 (487)
...++.++++||||+++.... . ....+.++......|... +..+.+.+... ++++||||+|+
T Consensus 137 ~~~~~~~~i~~SAT~~~~~~~----~-~~~~~~~~~~~~~~p~~~------------~~~~~~~l~~~-~~~~lVF~~s~ 198 (451)
T 2jlq_A 137 VEMGEAAAIFMTATPPGSTDP----F-PQSNSPIEDIEREIPERS------------WNTGFDWITDY-QGKTVWFVPSI 198 (451)
T ss_dssp HHTTSCEEEEECSSCTTCCCS----S-CCCSSCEEEEECCCCSSC------------CSSSCHHHHHC-CSCEEEECSSH
T ss_pred hcCCCceEEEEccCCCccchh----h-hcCCCceEecCccCCchh------------hHHHHHHHHhC-CCCEEEEcCCH
Confidence 345689999999999875422 1 112222221111111100 01122333333 45899999999
Q ss_pred chHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeC--------------
Q 011387 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN-------------- 334 (487)
Q Consensus 269 ~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~-------------- 334 (487)
+.++.+++.|++.|+.+..+|+++. .++++.|.+|+.+|||||+++++|||+|+ ++||++|
T Consensus 199 ~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~ 273 (451)
T 2jlq_A 199 KAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPER 273 (451)
T ss_dssp HHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCE
T ss_pred HHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccce
Confidence 9999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred ------CCCCHHHHHHHHhccCCCCC-CceEEEEEec
Q 011387 335 ------IPKSMEAFYQESGRAGRDQL-PSKSLLYYGM 364 (487)
Q Consensus 335 ------~p~s~~~y~Qr~GRagR~g~-~g~~i~~~~~ 364 (487)
.|.|.++|+||+||+||.|. +|.|++|+..
T Consensus 274 l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 274 VILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8899888743
No 40
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=4.8e-39 Score=336.92 Aligned_cols=299 Identities=13% Similarity=0.073 Sum_probs=218.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHHHcC----CceEEec
Q 011387 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKG----IAGEFLS 109 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~~~----~~~~~~~ 109 (487)
+|||+|.++++.+++++++++.+|||+|||+++++++.. ..++++||+|+++|+.|+.+++++++ .....+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 799999999999999999999999999999999988875 34599999999999999999999863 2445555
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHH
Q 011387 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (487)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~ 189 (487)
++...... .....+++++||+.+.... ......++++||||||++.. ..+..+..
T Consensus 193 ~~~~~~~~---------~~~~~~I~i~T~~~l~~~~-------~~~~~~~~liIiDE~H~~~~---------~~~~~il~ 247 (510)
T 2oca_A 193 GGASKDDK---------YKNDAPVVVGTWQTVVKQP-------KEWFSQFGMMMNDECHLATG---------KSISSIIS 247 (510)
T ss_dssp GGCCTTGG---------GCTTCSEEEEEHHHHTTSC-------GGGGGGEEEEEEETGGGCCH---------HHHHHHGG
T ss_pred cCCccccc---------cccCCcEEEEeHHHHhhch-------hhhhhcCCEEEEECCcCCCc---------ccHHHHHH
Confidence 55433221 1134788888888665432 12234689999999999865 33445555
Q ss_pred hC-CCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCC--------CCCcceEEEEeeC-----------ch-------
Q 011387 190 YL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF--------NRPNLFYEVRYKD-----------LL------- 242 (487)
Q Consensus 190 ~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~--------~~~~~~~~v~~~~-----------~~------- 242 (487)
.+ +..++++||||+++.... +....++..+.....+. ..+.....+.... ..
T Consensus 248 ~~~~~~~~l~lSATp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (510)
T 2oca_A 248 GLNNCMFKFGLSGSLRDGKAN-IMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKII 326 (510)
T ss_dssp GCTTCCEEEEEESCGGGCSSC-HHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHH
T ss_pred hcccCcEEEEEEeCCCCCccc-HHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHH
Confidence 65 567899999999655322 12211111222211111 1111111111100 00
Q ss_pred ---hhHHHHHHHHHHhC---CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-
Q 011387 243 ---DDAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT- 315 (487)
Q Consensus 243 ---~~~~~~l~~~l~~~---~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT- 315 (487)
..+...+.+.+... .+.++|||++ .+.++.+++.|.+.+..+..+||+++.++|.++++.|.+|+.+|||||
T Consensus 327 ~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~ 405 (510)
T 2oca_A 327 TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASY 405 (510)
T ss_dssp HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEH
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence 11222344444433 5667777777 888999999999998899999999999999999999999999999999
Q ss_pred CccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEe
Q 011387 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (487)
Q Consensus 316 ~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~ 363 (487)
+++++|+|+|++++||+++.|++...|+|++||+||.|+.+.++++++
T Consensus 406 ~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 406 GVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999998876666655
No 41
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.9e-39 Score=346.07 Aligned_cols=288 Identities=13% Similarity=0.096 Sum_probs=201.6
Q ss_pred CCcHHHH-----HHHHHHH------cCCCEEEEcCCCchhhHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHHHcC
Q 011387 38 QFRDKQL-----DAIQAVL------SGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKG 102 (487)
Q Consensus 38 ~~~~~Q~-----~~i~~~l------~~~dvlv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~~~ 102 (487)
.|+++|+ ++|+.++ +++|+++.||||||||++|++|++. .+.+++|++||++|+.|+.+.++.++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 8999999 9999888 8999999999999999999988874 36789999999999999999988765
Q ss_pred CceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCccccc---Chh-hHHHHHhhhhcCCccEEEEeccccccccCCCCh
Q 011387 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA---TPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (487)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~---t~~-~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~ 178 (487)
+.. .... .. .+.||..+. +.+ ....+.......+++++||||||++. ..+.
T Consensus 295 i~~--~~~~-------------------l~-~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~---~~~~ 349 (673)
T 2wv9_A 295 VRY--LTPA-------------------VQ-REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTD---PASI 349 (673)
T ss_dssp CEE--CCC-----------------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCC---HHHH
T ss_pred eee--eccc-------------------cc-ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccC---ccHH
Confidence 431 1100 00 023333221 222 11222333356789999999999981 1112
Q ss_pred HHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHHHHhCCC
Q 011387 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258 (487)
Q Consensus 179 ~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~ 258 (487)
.....+..+.. .++.++++||||+++.+.. ......+. . .+... ........+...+.. .+
T Consensus 350 ~~~~~l~~~~~-~~~~~vl~~SAT~~~~i~~----~~~~~~~i-----------~-~v~~~-~~~~~~~~~l~~l~~-~~ 410 (673)
T 2wv9_A 350 AARGYIATRVE-AGEAAAIFMTATPPGTSDP----FPDTNSPV-----------H-DVSSE-IPDRAWSSGFEWITD-YA 410 (673)
T ss_dssp HHHHHHHHHHH-TTSCEEEEECSSCTTCCCS----SCCCSSCE-----------E-EEECC-CCSSCCSSCCHHHHS-CC
T ss_pred HHHHHHHHhcc-ccCCcEEEEcCCCChhhhh----hcccCCce-----------E-EEeee-cCHHHHHHHHHHHHh-CC
Confidence 22222222221 2578999999999866321 00001111 1 11100 000111122233333 46
Q ss_pred ceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEE------
Q 011387 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH------ 332 (487)
Q Consensus 259 ~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~------ 332 (487)
+++||||++++.++.+++.|++.++.+..+||+ +|.++++.|.+|+.+|||||+++++|||+| +++|||
T Consensus 411 ~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~ 485 (673)
T 2wv9_A 411 GKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVK 485 (673)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECC
T ss_pred CCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCccc
Confidence 789999999999999999999999999999994 788999999999999999999999999999 999998
Q ss_pred --------------eCCCCCHHHHHHHHhccCCC-CCCceEEEEE---ecchHHHHHHHH
Q 011387 333 --------------FNIPKSMEAFYQESGRAGRD-QLPSKSLLYY---GMDDRRRMEFIL 374 (487)
Q Consensus 333 --------------~~~p~s~~~y~Qr~GRagR~-g~~g~~i~~~---~~~d~~~~~~i~ 374 (487)
|++|.+.++|+||+||+||. |++|.|++|+ ++.|...+..+.
T Consensus 486 p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie 545 (673)
T 2wv9_A 486 PTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTE 545 (673)
T ss_dssp EEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHH
T ss_pred ceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHH
Confidence 56899999999999999999 7899999996 566654444443
No 42
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.5e-38 Score=329.94 Aligned_cols=288 Identities=18% Similarity=0.167 Sum_probs=215.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc-eEEecCCCCHHH
Q 011387 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~-~~~~~~~~~~~~ 116 (487)
.|+|+|.++++.+++++++++.+|||+|||++|+.++...+.++||++|+++|+.|+.+++.++++. ...++++...
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-- 170 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC--
Confidence 6899999999999999999999999999999999999888999999999999999999999999888 7777765431
Q ss_pred HHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcE
Q 011387 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (487)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~ 196 (487)
..+++++|++.+. ...... ...+++|||||||++...+ |+ .+...++..++
T Consensus 171 -------------~~~Ivv~T~~~l~------~~~~~~-~~~~~liIvDEaH~~~~~~--~~-------~~~~~~~~~~~ 221 (472)
T 2fwr_A 171 -------------LKPLTVSTYDSAY------VNAEKL-GNRFMLLIFDEVHHLPAES--YV-------QIAQMSIAPFR 221 (472)
T ss_dssp -------------CCSEEEEEHHHHH------HTHHHH-TTTCSEEEEETGGGTTSTT--TH-------HHHHTCCCSEE
T ss_pred -------------cCCEEEEEcHHHH------HHHHHh-cCCCCEEEEECCcCCCChH--HH-------HHHHhcCCCeE
Confidence 2456666655432 222211 2458999999999998755 33 24556678889
Q ss_pred EEEecCCChHHHH--HHHHHhc---------------CCCCeE--EecCCC-------------------CCcce-----
Q 011387 197 LALTATAAPKVQK--DVMESLC---------------LQNPLV--LKSSFN-------------------RPNLF----- 233 (487)
Q Consensus 197 i~lSAT~~~~~~~--~i~~~l~---------------~~~~~~--~~~~~~-------------------~~~~~----- 233 (487)
+++|||+...... .+...++ +..+.. +..... ..++.
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE 301 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh
Confidence 9999999732100 0111110 111111 000000 00000
Q ss_pred -E-EE------Ee---------------eCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecC
Q 011387 234 -Y-EV------RY---------------KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHA 290 (487)
Q Consensus 234 -~-~v------~~---------------~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~ 290 (487)
+ .. .. ......+...+.++++...+.++||||++++.++.+++.|. +..+||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g 376 (472)
T 2fwr_A 302 DFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITH 376 (472)
T ss_dssp SSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCS
T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeC
Confidence 0 00 00 00012456778888888888999999999999999999873 568999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCC-ceEEEE
Q 011387 291 GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP-SKSLLY 361 (487)
Q Consensus 291 ~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~-g~~i~~ 361 (487)
+++.++|.++++.|.+|+.+|||||+++++|+|+|++++||+++.|+|...|+||+||+||.|+. +.+++|
T Consensus 377 ~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 377 RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp SSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999854 455443
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=9.8e-39 Score=338.48 Aligned_cols=308 Identities=13% Similarity=0.087 Sum_probs=211.9
Q ss_pred CChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc----CCCeEEEeCcHHHHHHHHH
Q 011387 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQV 95 (487)
Q Consensus 20 ~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~ 95 (487)
+++++.+.+++.. ....++|+|+.+++.+++|+|+++.||||||||++|++|++. .+.++||++|+++|+.|+.
T Consensus 155 l~~~~~~~~~l~~--~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~ 232 (618)
T 2whx_A 155 VTKSGDYVSAITQ--AERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEME 232 (618)
T ss_dssp -------CEECBC--CCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHH
T ss_pred ccchHHHHHHHhh--ccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHH
Confidence 4455555555543 246788888888999999999999999999999999999874 4679999999999999999
Q ss_pred HHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhH-HHHHhhhhcCCccEEEEeccccccccC
Q 011387 96 IGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLKKIHSRGLLNLVAIDEAHCISSWG 174 (487)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~-~~l~~~~~~~~l~~lViDEah~~~~~g 174 (487)
+.++...+ ........ ....+...+. +.|.+.+ ..+.......++++|||||||++ +.+
T Consensus 233 ~~l~~~~v--~~~~~~l~-----------~~~tp~~~i~------~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~ 292 (618)
T 2whx_A 233 EALRGLPI--RYQTPAVK-----------SDHTGREIVD------LMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPC 292 (618)
T ss_dssp HHTTTSCE--EECCTTSS-----------CCCCSSSCEE------EEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHH
T ss_pred HHhcCCce--eEecccce-----------eccCCCceEE------EEChHHHHHHHhccccccCCeEEEEECCCCC-Ccc
Confidence 88874322 21111000 0011111111 1233322 23333344678999999999998 322
Q ss_pred CCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHHHH
Q 011387 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254 (487)
Q Consensus 175 ~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~ 254 (487)
|...+..+..... .++.++++||||++..... ... .++..+......+ ...+..+...+.
T Consensus 293 --~~~~~~~i~~~l~-~~~~q~il~SAT~~~~~~~----~~~-~~~~~~~v~~~~~------------~~~~~~ll~~l~ 352 (618)
T 2whx_A 293 --SVAARGYISTRVE-MGEAAAIFMTATPPGSTDP----FPQ-SNSPIEDIEREIP------------ERSWNTGFDWIT 352 (618)
T ss_dssp --HHHHHHHHHHHHH-HTSCEEEEECSSCTTCCCS----SCC-CSSCEEEEECCCC------------SSCCSSSCHHHH
T ss_pred --HHHHHHHHHHHhc-ccCccEEEEECCCchhhhh----hhc-cCCceeeecccCC------------HHHHHHHHHHHH
Confidence 4444433333321 1578999999999876421 111 1222211111100 011112233333
Q ss_pred hCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEE----
Q 011387 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV---- 330 (487)
Q Consensus 255 ~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~V---- 330 (487)
+. ++++||||+|++.++.+++.|++.|+.+..+||+ +|.++++.|++|+.+|||||+++++|||+| +++|
T Consensus 353 ~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 353 DY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp HC-CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred hC-CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECc
Confidence 33 5689999999999999999999999999999984 688899999999999999999999999997 9888
Q ss_pred ----------------EEeCCCCCHHHHHHHHhccCCCCC-CceEEEEEe---cchHHHHHHHHH
Q 011387 331 ----------------CHFNIPKSMEAFYQESGRAGRDQL-PSKSLLYYG---MDDRRRMEFILS 375 (487)
Q Consensus 331 ----------------I~~~~p~s~~~y~Qr~GRagR~g~-~g~~i~~~~---~~d~~~~~~i~~ 375 (487)
|+++.|.|.++|+||+||+||.|. +|.|++|+. +.|...+..+..
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~ 491 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEA 491 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHH
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHh
Confidence 778889999999999999999964 899999997 677666666655
No 44
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5.7e-39 Score=328.85 Aligned_cols=278 Identities=13% Similarity=0.109 Sum_probs=187.7
Q ss_pred HHHcCCCEEEEcCCCchhhHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHH
Q 011387 49 AVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDL 124 (487)
Q Consensus 49 ~~l~~~dvlv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (487)
.+++|+|+++.||||||||++|++|++. .+.+++|++||++|+.|+.+.++.+++. .....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~--~~~~~------------- 68 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK--FHTQA------------- 68 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEE--EESSC-------------
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeE--Eeccc-------------
Confidence 3567899999999999999999998875 3679999999999999999998865432 11100
Q ss_pred hcCCCcccEEEeCccccc---ChhhH-HHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEe
Q 011387 125 DSGKPSLRLLYVTPELTA---TPGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200 (487)
Q Consensus 125 ~~~~~~~~il~~tpe~v~---t~~~~-~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lS 200 (487)
.. .++||..+. +.+.+ ..+.+.....+++++||||||++ +.+ |...+..+..+.. .++.++++||
T Consensus 69 ------~~-~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~--~~~~~~~~~~~~~-~~~~~~l~~S 137 (440)
T 1yks_A 69 ------FS-AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPA--SIAARGWAAHRAR-ANESATILMT 137 (440)
T ss_dssp ------CC-CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHH--HHHHHHHHHHHHH-TTSCEEEEEC
T ss_pred ------ce-eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-Ccc--hHHHHHHHHHHhc-cCCceEEEEe
Confidence 00 133443221 11111 11222233678999999999998 221 3333333333322 3578999999
Q ss_pred cCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHh
Q 011387 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA 280 (487)
Q Consensus 201 AT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~ 280 (487)
||+++.+.. ......+.... ..... ......+...+.+. ++++||||++++.++.+++.|++
T Consensus 138 AT~~~~~~~----~~~~~~~~~~~----------~~~~~---~~~~~~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~ 199 (440)
T 1yks_A 138 ATPPGTSDE----FPHSNGEIEDV----------QTDIP---SEPWNTGHDWILAD-KRPTAWFLPSIRAANVMAASLRK 199 (440)
T ss_dssp SSCTTCCCS----SCCCSSCEEEE----------ECCCC---SSCCSSSCHHHHHC-CSCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCchhhh----hhhcCCCeeEe----------eeccC---hHHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHH
Confidence 999876421 11111111100 00000 01111122333333 56899999999999999999999
Q ss_pred CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEE-------------------eCCCCCHHH
Q 011387 281 GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------------------FNIPKSMEA 341 (487)
Q Consensus 281 ~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~-------------------~~~p~s~~~ 341 (487)
.|+.+..+|| ++|.++++.|.+|+.+|||||+++++|||+| +++||+ ++.|.+.++
T Consensus 200 ~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~ 274 (440)
T 1yks_A 200 AGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASS 274 (440)
T ss_dssp TTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHH
T ss_pred cCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHH
Confidence 9999999999 4688999999999999999999999999999 999997 889999999
Q ss_pred HHHHHhccCCC-CCCceEEEEE---ecchHHHHHHHHH
Q 011387 342 FYQESGRAGRD-QLPSKSLLYY---GMDDRRRMEFILS 375 (487)
Q Consensus 342 y~Qr~GRagR~-g~~g~~i~~~---~~~d~~~~~~i~~ 375 (487)
|+||+||+||. |++|.|++|+ ++.|...+..+..
T Consensus 275 ~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~ 312 (440)
T 1yks_A 275 AAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEA 312 (440)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHH
T ss_pred HHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhH
Confidence 99999999997 6899999996 5667666666554
No 45
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=5.9e-36 Score=316.61 Aligned_cols=322 Identities=18% Similarity=0.149 Sum_probs=238.2
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 011387 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (487)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~---- 100 (487)
.+.++.+|+ .|+++|..+++.+++|+ ++.|+||+|||++|.+|++. .+..++||+|+++|+.|..+.+..
T Consensus 102 Ea~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 102 EAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 345567899 89999999999999998 99999999999999999963 377899999999999998888765
Q ss_pred cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh-------hhhcCCccEEEEecccccc-c
Q 011387 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-------IHSRGLLNLVAIDEAHCIS-S 172 (487)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~-------~~~~~~l~~lViDEah~~~-~ 172 (487)
+|+.+..+.++.....+...+. .+|+|+||..+. ++.+.. ....+.+.++||||||.++ +
T Consensus 179 lGLsv~~i~gg~~~~~r~~~y~--------~DIvygTpgrlg----fDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiD 246 (922)
T 1nkt_A 179 LGLQVGVILATMTPDERRVAYN--------ADITYGTNNEFG----FDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILID 246 (922)
T ss_dssp TTCCEEECCTTCCHHHHHHHHH--------SSEEEEEHHHHH----HHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTT
T ss_pred cCCeEEEEeCCCCHHHHHHhcC--------CCEEEECchHhh----HHHHHhhhhccHhhhccCCCCEEEEeChHHHHHh
Confidence 5899998888877655443332 566665554331 122322 2345679999999999997 4
Q ss_pred cCC----------CChHHHHHHHHHHHhCC----------CCcEE-----------------EEecCCCh---HHHHHHH
Q 011387 173 WGH----------DFRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAP---KVQKDVM 212 (487)
Q Consensus 173 ~g~----------~f~~~~~~l~~l~~~~~----------~~~~i-----------------~lSAT~~~---~~~~~i~ 212 (487)
.+. +-...|..+..+...++ +.+++ ++|||.+. .+...+.
T Consensus 247 eartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~ 326 (922)
T 1nkt_A 247 EARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALK 326 (922)
T ss_dssp GGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHH
T ss_pred cCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHH
Confidence 321 11345677778888876 35566 78898764 2211111
Q ss_pred H-HhcCCC-------Ce---------------------------------------------------------------
Q 011387 213 E-SLCLQN-------PL--------------------------------------------------------------- 221 (487)
Q Consensus 213 ~-~l~~~~-------~~--------------------------------------------------------------- 221 (487)
. .+...+ ..
T Consensus 327 A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~ 406 (922)
T 1nkt_A 327 AKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQ 406 (922)
T ss_dssp HHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCG
T ss_pred HHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCch
Confidence 1 111100 00
Q ss_pred -------------EEecCCCCCcceEE---EEeeCchhhHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhCCC
Q 011387 222 -------------VLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI 283 (487)
Q Consensus 222 -------------~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~ 283 (487)
++..+.++|..... +.+. ....++..+.+.+.. ..+.++||||+|++.++.|++.|.+.|+
T Consensus 407 te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~-t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi 485 (922)
T 1nkt_A 407 TEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYK-TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRI 485 (922)
T ss_dssp GGHHHHHHHHCCEEEECCCSSCCCCEECCCEEES-CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC
Confidence 01111222222211 1122 234677788887754 2677899999999999999999999999
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCC------------------------------------
Q 011387 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV------------------------------------ 327 (487)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v------------------------------------ 327 (487)
++..+||++.+.++..+.+.|+.| .|+|||+++|||+|++.+
T Consensus 486 ~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (922)
T 1nkt_A 486 PHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIV 563 (922)
T ss_dssp CCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHH
T ss_pred CEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 999999999888877777877777 699999999999999975
Q ss_pred ----------------cEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchH
Q 011387 328 ----------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (487)
Q Consensus 328 ----------------~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~ 367 (487)
.+||+++.|.|...|.||+||+||.|.+|.+++|++.+|.
T Consensus 564 ~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 564 KEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998875
No 46
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=8.4e-37 Score=322.79 Aligned_cols=320 Identities=18% Similarity=0.153 Sum_probs=217.4
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 011387 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (487)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~---- 100 (487)
.+.++.+|. .|+++|..+++.++.|+ ++.|+||+|||++|.+|++. .+..++|++||++|+.|..+.+..
T Consensus 65 ea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 65 EASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 344556786 79999999999999998 99999999999999999874 377899999999999998888766
Q ss_pred cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhH--HHHHhh-------hhcCCccEEEEecccccc
Q 011387 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM--SKLKKI-------HSRGLLNLVAIDEAHCIS 171 (487)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~--~~l~~~-------~~~~~l~~lViDEah~~~ 171 (487)
+|+.+..+.++.....+..... .+| +++||+.+ +.+... ...+.+.++||||||.++
T Consensus 142 lgl~v~~i~GG~~~~~r~~~~~--------~dI------vvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPAKREAYA--------ADI------TYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp TTCCEEECCTTCCHHHHHHHHH--------SSE------EEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred cCCeEEEEeCCCCHHHHHHhcC--------CCE------EEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHH
Confidence 5888988888877654332221 455 55566654 233322 345779999999999998
Q ss_pred -ccCCC----------ChHHHHHHHHHHHhCC---------------------CCcEE----------------------
Q 011387 172 -SWGHD----------FRPSYRKLSSLRNYLP---------------------DVPIL---------------------- 197 (487)
Q Consensus 172 -~~g~~----------f~~~~~~l~~l~~~~~---------------------~~~~i---------------------- 197 (487)
+.|.. -...|..+..+...+| ..+++
T Consensus 208 iD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~ 287 (853)
T 2fsf_A 208 IDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEG 287 (853)
T ss_dssp TTTTTCEEEEEEC-------------------------------------------------------------------
T ss_pred HhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCccccc
Confidence 44411 0112333334443333 12222
Q ss_pred --EEecCCCh---HHHHHHH-HHh--------------------------------cCCCC-------------------
Q 011387 198 --ALTATAAP---KVQKDVM-ESL--------------------------------CLQNP------------------- 220 (487)
Q Consensus 198 --~lSAT~~~---~~~~~i~-~~l--------------------------------~~~~~------------------- 220 (487)
++|||.+. .+...+. ..+ ++..+
T Consensus 288 ~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~I 367 (853)
T 2fsf_A 288 ESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASI 367 (853)
T ss_dssp ---------------------------------------------------------------------CCCCCEEEEEE
T ss_pred ccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceeccccccccee
Confidence 77887542 1100000 000 00000
Q ss_pred --------------------------------eEEecCCCCCcceEE---EEeeCchhhHHHHHHHHHHh--CCCceEEE
Q 011387 221 --------------------------------LVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIV 263 (487)
Q Consensus 221 --------------------------------~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~iI 263 (487)
.++..+.++|..+.. +.+. ....++..+.+.+.. ..+.++||
T Consensus 368 t~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~-~~~~K~~al~~~i~~~~~~gqpvLV 446 (853)
T 2fsf_A 368 TFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYM-TEAEKIQAIIEDIKERTAKGQPVLV 446 (853)
T ss_dssp EHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred ehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEe-CHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 011112233333221 1122 235788888888754 36789999
Q ss_pred EecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCC----------------
Q 011387 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV---------------- 327 (487)
Q Consensus 264 f~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v---------------- 327 (487)
||+|++.++.+++.|.+.|+++..+||++.+.++..+.+.|+.| .|+|||+++|||+|++..
T Consensus 447 ft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~ 524 (853)
T 2fsf_A 447 GTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAE 524 (853)
T ss_dssp EESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSS
T ss_pred EECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhH
Confidence 99999999999999999999999999999888888888888887 699999999999999974
Q ss_pred ---------------------cEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchH
Q 011387 328 ---------------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (487)
Q Consensus 328 ---------------------~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~ 367 (487)
.+||+++.|.|...|.||+||+||.|.+|.+++|++.+|.
T Consensus 525 ~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 525 QIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 6999999999999999999999999999999999998874
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8.5e-37 Score=331.42 Aligned_cols=326 Identities=17% Similarity=0.157 Sum_probs=233.4
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHc-CCCEEEEcCCCchhhHHHHHhHhc------C--CCeEEEe
Q 011387 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA------K--PGIVLVV 84 (487)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~-~~dvlv~apTGsGKTl~~~lp~l~------~--~~~~lvl 84 (487)
...|..+++++.+.+.++.. | ..|.+.|+++|+.++. +++++++||||+|||+ ++|++. . +..++++
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEE
T ss_pred CCCccccCCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEec
Confidence 45688999999999999985 6 6788899999987765 5679999999999999 444432 1 5569999
Q ss_pred CcHHHHHHHHHHHHHH-cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHH-HHhhhhcCCccEE
Q 011387 85 SPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-LKKIHSRGLLNLV 162 (487)
Q Consensus 85 ~P~~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~-l~~~~~~~~l~~l 162 (487)
+|+++|+.|+.+.+.. ++.......+..... . .......+++++ |++.+.. +........+++|
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~------~--~~~~~~~~I~v~------T~G~l~r~l~~~~~l~~~~~l 212 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRF------E--NKTSNKTILKYM------TDGMLLREAMEDHDLSRYSCI 212 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETT------E--EECCTTCSEEEE------EHHHHHHHHHHSTTCTTEEEE
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceecc------c--cccCCCCCEEEE------CHHHHHHHHhhCccccCCCEE
Confidence 9999999999888755 333221111100000 0 001123455444 4554433 3334457789999
Q ss_pred EEecccc-ccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeC-
Q 011387 163 AIDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD- 240 (487)
Q Consensus 163 ViDEah~-~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~- 240 (487)
||||+|. ..+ ....+..+..+....++.++++||||.+.. .+..+++ ..+.+.... ....+...+....
T Consensus 213 IlDEah~R~ld----~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~---~l~~~~~-~~~vi~v~g-r~~pv~~~~~~~~~ 283 (773)
T 2xau_A 213 ILDEAHERTLA----TDILMGLLKQVVKRRPDLKIIIMSATLDAE---KFQRYFN-DAPLLAVPG-RTYPVELYYTPEFQ 283 (773)
T ss_dssp EECSGGGCCHH----HHHHHHHHHHHHHHCTTCEEEEEESCSCCH---HHHHHTT-SCCEEECCC-CCCCEEEECCSSCC
T ss_pred EecCccccccc----hHHHHHHHHHHHHhCCCceEEEEeccccHH---HHHHHhc-CCCcccccC-cccceEEEEecCCc
Confidence 9999996 332 112234455566667889999999999754 3344442 233322222 1112222111111
Q ss_pred --chhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHh-----------CCCceEEecCCCCHHHHHHHHHHHh--
Q 011387 241 --LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-----------GGISCAAYHAGLNDKARSSVLDDWI-- 305 (487)
Q Consensus 241 --~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~-----------~g~~~~~~h~~l~~~~R~~~~~~f~-- 305 (487)
.....+..+.++.....++++||||+++++++.+++.|.+ .++.+..+||+|++++|.++++.|.
T Consensus 284 ~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~ 363 (773)
T 2xau_A 284 RDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPES 363 (773)
T ss_dssp SCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCC
T ss_pred hhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccc
Confidence 1123344555555555778999999999999999999985 5788999999999999999999999
Q ss_pred ---cCCCcEEEEcCccccccccCCCcEEEEeCC------------------CCCHHHHHHHHhccCCCCCCceEEEEEec
Q 011387 306 ---SSRKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (487)
Q Consensus 306 ---~g~~~vLVaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~ 364 (487)
+|..+|||||+++++|||+|++++||++++ |.|.++|+||+|||||. ++|.|+.+++.
T Consensus 364 ~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~ 442 (773)
T 2xau_A 364 HNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 442 (773)
T ss_dssp SSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCH
T ss_pred cCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecH
Confidence 999999999999999999999999999888 88999999999999999 79999999987
Q ss_pred chH
Q 011387 365 DDR 367 (487)
Q Consensus 365 ~d~ 367 (487)
.+.
T Consensus 443 ~~~ 445 (773)
T 2xau_A 443 EAF 445 (773)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 48
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=6.7e-38 Score=322.83 Aligned_cols=267 Identities=14% Similarity=0.118 Sum_probs=185.4
Q ss_pred HHHHcCCCEEEEcCCCchhhHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHH
Q 011387 48 QAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYED 123 (487)
Q Consensus 48 ~~~l~~~dvlv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (487)
..+.+++++++.||||||||++|++|++. .+.++||++|+++|+.|+.+.++... ...........
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~~--v~~~~~~~~~~-------- 85 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGLP--VRYQTSAVQRE-------- 85 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTSC--EEECC--------------
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCce--EeEEecccccC--------
Confidence 34557889999999999999999999885 57899999999999999999987432 22221111000
Q ss_pred HhcCCCcccEEEeCcccccChh-hHHHHHhhhhcCCccEEEEeccccc-----cccCCCChHHHHHHHHHHHhCCCCcEE
Q 011387 124 LDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCI-----SSWGHDFRPSYRKLSSLRNYLPDVPIL 197 (487)
Q Consensus 124 ~~~~~~~~~il~~tpe~v~t~~-~~~~l~~~~~~~~l~~lViDEah~~-----~~~g~~f~~~~~~l~~l~~~~~~~~~i 197 (487)
..+...+.+ .|.+ ....+.......++++|||||||+. ..+| -+. .+...++.+++
T Consensus 86 ---~t~~~~i~~------~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~--------~~~-~~~~~~~~~~i 147 (459)
T 2z83_A 86 ---HQGNEIVDV------MCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARG--------YIA-TKVELGEAAAI 147 (459)
T ss_dssp -----CCCSEEE------EEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHH--------HHH-HHHHTTSCEEE
T ss_pred ---CCCCcEEEE------EchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHH--------HHH-HHhccCCccEE
Confidence 011122222 2332 2233444445678999999999984 2222 111 12234689999
Q ss_pred EEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHH
Q 011387 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAY 277 (487)
Q Consensus 198 ~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~ 277 (487)
+||||++..+.. ......+...... .........+..++... ++++||||+|++.++.+++.
T Consensus 148 l~SAT~~~~~~~----~~~~~~pi~~~~~-------------~~~~~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~ 209 (459)
T 2z83_A 148 FMTATPPGTTDP----FPDSNAPIHDLQD-------------EIPDRAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMC 209 (459)
T ss_dssp EECSSCTTCCCS----SCCCSSCEEEEEC-------------CCCSSCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHH
T ss_pred EEEcCCCcchhh----hccCCCCeEEecc-------------cCCcchhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHH
Confidence 999999865311 1111222221100 00001111122334433 56899999999999999999
Q ss_pred HHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEE--------------------eCCCC
Q 011387 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH--------------------FNIPK 337 (487)
Q Consensus 278 L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~--------------------~~~p~ 337 (487)
|++.|+.+..+|++ +|.++++.|.+|+.+|||||+++++|||+|+ ++||+ |+.|.
T Consensus 210 L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~ 284 (459)
T 2z83_A 210 LQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPI 284 (459)
T ss_dssp HHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEEC
T ss_pred HHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCC
Confidence 99999999999995 6788999999999999999999999999999 99999 67999
Q ss_pred CHHHHHHHHhccCCCCC-CceEEEEEecc
Q 011387 338 SMEAFYQESGRAGRDQL-PSKSLLYYGMD 365 (487)
Q Consensus 338 s~~~y~Qr~GRagR~g~-~g~~i~~~~~~ 365 (487)
|.++|+||+|||||.|+ +|.|++|+...
T Consensus 285 s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 285 TSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 99999999999999997 99999998775
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.7e-37 Score=324.85 Aligned_cols=274 Identities=23% Similarity=0.207 Sum_probs=198.1
Q ss_pred CcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHH-cCCceEEecCCCCHHHH
Q 011387 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVK 117 (487)
Q Consensus 39 ~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~ 117 (487)
+++.|+++++.+.+++++++.||||||||.+|.+|++.++.+++|++|+++|+.|..+.+.+ ++.......+...
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~---- 293 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT---- 293 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE----
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe----
Confidence 56677777777778899999999999999999999999888999999999999999988865 4555554444322
Q ss_pred HHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC---CC
Q 011387 118 TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DV 194 (487)
Q Consensus 118 ~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~---~~ 194 (487)
.....+++++||+.+ . -.......+++++||||||++.. + |...+ ..+.+..+ ..
T Consensus 294 ---------~~~~~~IlV~TPGrL------l-~~~~l~l~~l~~lVlDEAH~l~~-~--~~~~l---~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 294 ---------ITTGAPVTYSTYGKF------L-ADGGCSGGAYDIIICDECHSTDS-T--TILGI---GTVLDQAETAGAR 351 (666)
T ss_dssp ---------ECCCCSEEEEEHHHH------H-HTTSCCTTSCSEEEETTTTCCSH-H--HHHHH---HHHHHHTTTTTCS
T ss_pred ---------ccCCCCEEEECcHHH------H-hCCCcccCcccEEEEccchhcCc-c--HHHHH---HHHHHhhhhcCCc
Confidence 112356666655543 1 11233455699999999987642 2 44444 44445444 33
Q ss_pred cEEEEecCCChHHHHHHHHHhcCCCCeEE--ecCCCCCcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHH
Q 011387 195 PILALTATAAPKVQKDVMESLCLQNPLVL--KSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCD 272 (487)
Q Consensus 195 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~ 272 (487)
.++++|||++..+ ....+... ....... +. ..... .. ++...++++||||+|++.++
T Consensus 352 llil~SAT~~~~i--------~~~~p~i~~v~~~~~~~-i~--~~~~~---~~-------l~~~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 352 LVVLATATPPGSV--------TVPHPNIEEVALSNTGE-IP--FYGKA---IP-------IEAIRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp EEEEEESSCTTCC--------CCCCTTEEEEECBSCSS-EE--ETTEE---EC-------GGGSSSSEEEEECSCHHHHH
T ss_pred eEEEECCCCCccc--------ccCCcceEEEeecccch-hH--HHHhh---hh-------hhhccCCcEEEEeCCHHHHH
Confidence 3788899998732 11222111 1111111 10 00000 00 12336778999999999999
Q ss_pred HHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEE----------EeC--------
Q 011387 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----------HFN-------- 334 (487)
Q Consensus 273 ~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI----------~~~-------- 334 (487)
.+++.|++.|+.+..+||++++++ |.++..+|||||+++++|||+| +++|| |||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 999999999999999999999875 4566679999999999999996 99999 677
Q ss_pred ---CCCCHHHHHHHHhccCCCCCCceEEEEEecchHHH
Q 011387 335 ---IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (487)
Q Consensus 335 ---~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~ 369 (487)
.|.+.++|+||+||+|| |++|. +.|+++.|...
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 99999 99988776543
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.2e-35 Score=314.43 Aligned_cols=304 Identities=17% Similarity=0.178 Sum_probs=193.5
Q ss_pred CCcHHHHHHHHHHHc----C-CCEEEEcCCCchhhHHHHHhHh---c---------CCCeEEEeCcHHHHHHHHH-HHHH
Q 011387 38 QFRDKQLDAIQAVLS----G-RDCFCLMPTGGGKSMCYQIPAL---A---------KPGIVLVVSPLIALMENQV-IGLK 99 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~----~-~dvlv~apTGsGKTl~~~lp~l---~---------~~~~~lvl~P~~~L~~q~~-~~l~ 99 (487)
.+|++|.++++.+++ + +++++.+|||+|||++++..+. . ..+++|||+|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999998875 4 5689999999999999754432 1 4588999999999999999 7788
Q ss_pred HcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChH
Q 011387 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179 (487)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~ 179 (487)
.++.....+.... .....+++++||..+........+........+++|||||||++...+.
T Consensus 258 ~~~~~~~~~~~~~--------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~---- 319 (590)
T 3h1t_A 258 PFGDARHKIEGGK--------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDN---- 319 (590)
T ss_dssp TTCSSEEECCC----------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------
T ss_pred hcchhhhhhhccC--------------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccch----
Confidence 7776655544211 1234688888888765432111112233455689999999999876421
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCCCeEE------ecCCCCCcceEEEEee--------------
Q 011387 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL------KSSFNRPNLFYEVRYK-------------- 239 (487)
Q Consensus 180 ~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~------~~~~~~~~~~~~v~~~-------------- 239 (487)
..+..+...+++.++++||||+......+....++... ... ...+..+.....+...
T Consensus 320 --~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~-~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (590)
T 3h1t_A 320 --SNWREILEYFEPAFQIGMTATPLREDNRDTYRYFGNPI-YTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVD 396 (590)
T ss_dssp ----CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCS-EEECHHHHHHHTSSCCEEEEEEEETTCC-----------
T ss_pred --HHHHHHHHhCCcceEEEeccccccccchhHHHHcCCce-EecCHHHHhhCCccCCcEEEEeeeeeecccccccccccc
Confidence 33455667788889999999998655444444443210 000 0011111111111100
Q ss_pred -------------Cch----------hhHHHHHHHHHHh-CCCceEEEEecccchHHHHHHHHHhCCCc--------eEE
Q 011387 240 -------------DLL----------DDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGIS--------CAA 287 (487)
Q Consensus 240 -------------~~~----------~~~~~~l~~~l~~-~~~~~~iIf~~s~~~~~~l~~~L~~~g~~--------~~~ 287 (487)
... ......+.++++. ..+.++||||++++.|+.+++.|.+.+.. +..
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 397 RFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp ------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 000 0112234444443 35578999999999999999999875432 678
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCc---EEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCC--CceEEEEE
Q 011387 288 YHAGLNDKARSSVLDDWISSRKQ---VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL--PSKSLLYY 362 (487)
Q Consensus 288 ~h~~l~~~~R~~~~~~f~~g~~~---vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~--~g~~i~~~ 362 (487)
+||++++ +|.++++.|++|+.+ |||+|+++++|||+|++++||+++.|+|...|+||+||+||.|. .....+++
T Consensus 477 i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 477 VTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp CSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred EeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 8888754 799999999998866 88999999999999999999999999999999999999999874 33334444
Q ss_pred e
Q 011387 363 G 363 (487)
Q Consensus 363 ~ 363 (487)
+
T Consensus 556 D 556 (590)
T 3h1t_A 556 D 556 (590)
T ss_dssp E
T ss_pred e
Confidence 4
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=4.8e-36 Score=306.49 Aligned_cols=265 Identities=15% Similarity=0.113 Sum_probs=180.9
Q ss_pred cCCCEEEEcCCCchhhHHHHHhHh----cCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcC
Q 011387 52 SGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~lp~l----~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (487)
+|+++++.||||||||++|++|++ ..+.+++|++||++|+.|+.+.+. +.......+... ....
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~---------~~~~- 68 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQ---------SERT- 68 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC-------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCcc---------ccCC-
Confidence 478999999999999999988887 457799999999999999998886 344443332211 0111
Q ss_pred CCcccEEEeCcccccChhhH-HHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChH
Q 011387 128 KPSLRLLYVTPELTATPGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (487)
Q Consensus 128 ~~~~~il~~tpe~v~t~~~~-~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (487)
+...+.+ .|.+.+ ..+.......+++++||||||++..+ +......+..+. ..++.++++||||+++.
T Consensus 69 -~~~~~~~------~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~---~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 69 -GNEIVDF------MCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPA---SVAARGYIETRV-SMGDAGAIFMTATPPGT 137 (431)
T ss_dssp -CCCSEEE------EEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHH---HHHHHHHHHHHH-HTTSCEEEEEESSCTTC
T ss_pred -CCceEEE------EchHHHHHHHhcCccccCCCEEEEeCCccCCcc---HHHHHHHHHHHh-hCCCCcEEEEeCCCCcc
Confidence 1122222 233322 23344444778999999999997322 222222333222 23579999999999874
Q ss_pred HHHHHHHHhcCCCCeEEecCCCCCcceEE-EEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCce
Q 011387 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYE-VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 285 (487)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~ 285 (487)
... +... ++.+... .... ...+..+.+++... ++++||||++++.++.+++.|++.|..+
T Consensus 138 ~~~-----~~~~----------~~~i~~~~~~~~---~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v 198 (431)
T 2v6i_A 138 TEA-----FPPS----------NSPIIDEETRIP---DKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKV 198 (431)
T ss_dssp CCS-----SCCC----------SSCCEEEECCCC---SSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred hhh-----hcCC----------CCceeeccccCC---HHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeE
Confidence 211 1000 1111110 0111 11122233445544 4579999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcE-----------------EEEeCCCCCHHHHHHHHhc
Q 011387 286 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL-----------------VCHFNIPKSMEAFYQESGR 348 (487)
Q Consensus 286 ~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~-----------------VI~~~~p~s~~~y~Qr~GR 348 (487)
..+||+ +|.++++.|.+|+.+|||||+++++|||+| +.+ ||+++.|.+.++|+||+||
T Consensus 199 ~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR 273 (431)
T 2v6i_A 199 LYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGR 273 (431)
T ss_dssp EEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTT
T ss_pred EEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhc
Confidence 999997 578899999999999999999999999999 544 6888999999999999999
Q ss_pred cCCCCCCceEEEEEe
Q 011387 349 AGRDQLPSKSLLYYG 363 (487)
Q Consensus 349 agR~g~~g~~i~~~~ 363 (487)
+||.|..+.+++++.
T Consensus 274 ~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 274 IGRNPEKLGDIYAYS 288 (431)
T ss_dssp SSCCTTCCCCEEEEC
T ss_pred cCCCCCCCCeEEEEc
Confidence 999986554444443
No 52
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.1e-34 Score=320.59 Aligned_cols=315 Identities=16% Similarity=0.166 Sum_probs=224.2
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhHhc---C--CCeEEEeCcHHHHHHHHHHHHH-HcCCceEEec
Q 011387 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLK-EKGIAGEFLS 109 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~--~dvlv~apTGsGKTl~~~lp~l~---~--~~~~lvl~P~~~L~~q~~~~l~-~~~~~~~~~~ 109 (487)
+|+|+|.+++..++.. .++++.++||+|||++++..+.. . .++++||+|+ +|+.||..++. .++++...+.
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~~ 231 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALFD 231 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEECC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEEc
Confidence 6899999999988864 47889999999999988765532 2 3489999999 99999999994 4777776664
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEeCcccccCh-hhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHH
Q 011387 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (487)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~-~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~ 188 (487)
+..... ............+++++|++.+... ..... .....+++|||||||++..++......|..+..+.
T Consensus 232 ~~~~~~----~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~----l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 232 DERYAE----AQHDAYNPFDTEQLVICSLDFARRSKQRLEH----LCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp HHHHHH----HHHTTCSSSTTCSEEEECHHHHHTSTTTTHH----HHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred cchhhh----hhhhcccccccCCEEEEcHHHHhhCHHHHHH----hhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 332111 1111112223467888888766442 22122 22446999999999999876655555566666664
Q ss_pred HhCCCCcEEEEecCCChHHHHHHHHHhcC-------------------------------C-------------------
Q 011387 189 NYLPDVPILALTATAAPKVQKDVMESLCL-------------------------------Q------------------- 218 (487)
Q Consensus 189 ~~~~~~~~i~lSAT~~~~~~~~i~~~l~~-------------------------------~------------------- 218 (487)
.. ...++++||||.+....++...+.+ .
T Consensus 304 ~~--~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~ 381 (968)
T 3dmq_A 304 EH--VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQD 381 (968)
T ss_dssp TT--CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTC
T ss_pred hc--CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchh
Confidence 43 3458999999864211111110000 0
Q ss_pred --------------------------------CCeEEec------CCCCCcc-eEEEE----------------------
Q 011387 219 --------------------------------NPLVLKS------SFNRPNL-FYEVR---------------------- 237 (487)
Q Consensus 219 --------------------------------~~~~~~~------~~~~~~~-~~~v~---------------------- 237 (487)
....+.. .+..... .+.+.
T Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (968)
T 3dmq_A 382 IEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE 461 (968)
T ss_dssp SSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG
T ss_pred hHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH
Confidence 0000000 0000000 00000
Q ss_pred ---------------------eeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHh-CCCceEEecCCCCHH
Q 011387 238 ---------------------YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDK 295 (487)
Q Consensus 238 ---------------------~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~-~g~~~~~~h~~l~~~ 295 (487)
.......+...+.++++...+.++||||++++.++.+++.|.+ .|+++..+||+|++.
T Consensus 462 ~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~ 541 (968)
T 3dmq_A 462 DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSII 541 (968)
T ss_dssp GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTT
T ss_pred HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 0011134677888888888889999999999999999999995 599999999999999
Q ss_pred HHHHHHHHHhcCC--CcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEe
Q 011387 296 ARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (487)
Q Consensus 296 ~R~~~~~~f~~g~--~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~ 363 (487)
+|.++++.|++|+ ++|||||+++++|+|+|++++||+|++|+++..|.|++||+||.|+.+.++++..
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 9999999999998 9999999999999999999999999999999999999999999999987766643
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2e-34 Score=306.49 Aligned_cols=288 Identities=16% Similarity=0.202 Sum_probs=202.9
Q ss_pred HHHHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcC
Q 011387 48 QAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (487)
Q Consensus 48 ~~~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (487)
...+++++++++||||||||+. .+..+...+..+|++|+++|+.|+++++++.|+.+..+.++... -....
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~-al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~--------iv~Tp 220 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYH-AIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERV--------TVQPN 220 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHH-HHHHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEE--------CCSTT
T ss_pred HHhcCCCEEEEEcCCCCCHHHH-HHHHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeE--------EecCC
Confidence 3456889999999999999994 44444445667999999999999999999999988877765422 00011
Q ss_pred CCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC--CCcEEEEecCCCh
Q 011387 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAP 205 (487)
Q Consensus 128 ~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~--~~~~i~lSAT~~~ 205 (487)
....+++..|++.+.. ...++++||||||++.+.+ |...+. .+....+ +.+++++|||.
T Consensus 221 Gr~~~il~~T~e~~~l------------~~~v~lvVIDEaH~l~d~~--~g~~~~---~~l~~l~~~~i~il~~SAT~-- 281 (677)
T 3rc3_A 221 GKQASHVSCTVEMCSV------------TTPYEVAVIDEIQMIRDPA--RGWAWT---RALLGLCAEEVHLCGEPAAI-- 281 (677)
T ss_dssp CCCCSEEEEEGGGCCS------------SSCEEEEEECSGGGGGCTT--THHHHH---HHHHHCCEEEEEEEECGGGH--
T ss_pred CcccceeEecHhHhhh------------cccCCEEEEecceecCCcc--chHHHH---HHHHccCccceEEEeccchH--
Confidence 1124566666554421 2457999999999998755 444333 2333333 67888999983
Q ss_pred HHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCce
Q 011387 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 285 (487)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~ 285 (487)
.....+....+ ....+.. +.+..- ..+.... + ..+.... ...||||+|++.++.+++.|.+.++.+
T Consensus 282 ~~i~~l~~~~~--~~~~v~~-~~r~~~-l~~~~~~-----l----~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~v 347 (677)
T 3rc3_A 282 DLVMELMYTTG--EEVEVRD-YKRLTP-ISVLDHA-----L----ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLES 347 (677)
T ss_dssp HHHHHHHHHHT--CCEEEEE-CCCSSC-EEECSSC-----C----CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhcC--CceEEEE-eeecch-HHHHHHH-----H----HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCCe
Confidence 33344444332 2222221 111111 1111110 0 0111122 335899999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhc--CCCcEEEEcCccccccccCCCcEEEEeCC--------------CCCHHHHHHHHhcc
Q 011387 286 AAYHAGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNI--------------PKSMEAFYQESGRA 349 (487)
Q Consensus 286 ~~~h~~l~~~~R~~~~~~f~~--g~~~vLVaT~~~~~GiDip~v~~VI~~~~--------------p~s~~~y~Qr~GRa 349 (487)
..+||+|++++|.++++.|.+ |..+|||||+++++|||+ ++++||+++. |.|..+|+||+|||
T Consensus 348 ~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRA 426 (677)
T 3rc3_A 348 AVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRA 426 (677)
T ss_dssp EEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTB
T ss_pred eeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCC
Confidence 999999999999999999999 889999999999999999 8999999999 77999999999999
Q ss_pred CCCCCC---ceEEEEEecchHHHHHHHHHhccc
Q 011387 350 GRDQLP---SKSLLYYGMDDRRRMEFILSKNQS 379 (487)
Q Consensus 350 gR~g~~---g~~i~~~~~~d~~~~~~i~~~~~~ 379 (487)
||.|.. |.|+.+ ...+...++.++.....
T Consensus 427 GR~g~~g~~G~v~~l-~~~d~~~~~~~~~~~~~ 458 (677)
T 3rc3_A 427 GRFSSRFKEGEVTTM-NHEDLSLLKEILKRPVD 458 (677)
T ss_dssp TCTTSSCSSEEEEES-STTHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCEEEEEE-ecchHHHHHHHHhcCcc
Confidence 999965 554444 45566666777665443
No 54
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.7e-31 Score=276.87 Aligned_cols=323 Identities=19% Similarity=0.180 Sum_probs=228.5
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 011387 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (487)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~---- 100 (487)
.+.++.+|+. +++.|.-..-.+..|+ +..+.||+|||+++.+|++. .+..+.|++|+..|+.+..+++..
T Consensus 66 EAa~R~lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~ 142 (822)
T 3jux_A 66 EAARRTLGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLF 142 (822)
T ss_dssp HHHHHHTSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHHH
Confidence 4456677864 8899999888888888 99999999999999999874 477899999999999998888766
Q ss_pred cCCceEEecCC--------------------------------------------------CCHHHHHHHHHHHhcCCCc
Q 011387 101 KGIAGEFLSST--------------------------------------------------QTMQVKTKIYEDLDSGKPS 130 (487)
Q Consensus 101 ~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~ 130 (487)
+|+.+..+.+. ....+++..+.
T Consensus 143 Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~-------- 214 (822)
T 3jux_A 143 LGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYL-------- 214 (822)
T ss_dssp TTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHH--------
T ss_pred hCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhc--------
Confidence 68888877662 11112222222
Q ss_pred ccEEEeCcccccChhhHHHH---HhhhhcCCccEEEEeccccccc-----------c--------------------CCC
Q 011387 131 LRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS-----------W--------------------GHD 176 (487)
Q Consensus 131 ~~il~~tpe~v~t~~~~~~l---~~~~~~~~l~~lViDEah~~~~-----------~--------------------g~~ 176 (487)
.+|.|+|..-++-.-..+.+ ....-.+.+.+.||||+|.++= - +.+
T Consensus 215 ~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~d 294 (822)
T 3jux_A 215 CDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKD 294 (822)
T ss_dssp SSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTT
T ss_pred CCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCc
Confidence 46777765533211111111 0111235578899999998630 0 000
Q ss_pred Ch------------HHHHHH----------------------HHHHHh--C-----------------------------
Q 011387 177 FR------------PSYRKL----------------------SSLRNY--L----------------------------- 191 (487)
Q Consensus 177 f~------------~~~~~l----------------------~~l~~~--~----------------------------- 191 (487)
|. .....+ ..++.. |
T Consensus 295 y~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~ 374 (822)
T 3jux_A 295 FTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRY 374 (822)
T ss_dssp EEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCC
T ss_pred EEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcC
Confidence 10 000000 011110 0
Q ss_pred --------------C-------------------CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEE--
Q 011387 192 --------------P-------------------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV-- 236 (487)
Q Consensus 192 --------------~-------------------~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v-- 236 (487)
+ -..+.+||||+..+. ..+.+..++. ++..+.++|......
T Consensus 375 s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~-~Ef~~iY~l~---vv~IPtnkp~~R~d~~d 450 (822)
T 3jux_A 375 SGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEE-SEFVQVYGME---VVVIPTHKPMIRKDHDD 450 (822)
T ss_dssp GGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGH-HHHHHHSCCC---EEECCCSSCCCCEECCC
T ss_pred chHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHH-HHHHHHhCCe---EEEECCCCCcceeecCc
Confidence 0 113789999997754 4555555543 555566777665443
Q ss_pred EeeCchhhHHHHHHHHHHhC--CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011387 237 RYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (487)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVa 314 (487)
........++..+.+.+... .+.++||||+|++.++.+++.|.+.|+++..+||+..+.++..+.+.+..| .|+||
T Consensus 451 ~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVA 528 (822)
T 3jux_A 451 LVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIA 528 (822)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEE
T ss_pred EEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEE
Confidence 12223357888888887753 578999999999999999999999999999999996666666566666555 69999
Q ss_pred cCccccccccC--------CCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchH
Q 011387 315 TVAFGMGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (487)
Q Consensus 315 T~~~~~GiDip--------~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~ 367 (487)
|++++||+|++ +..+||++++|.|.+.|.||+||+||.|.+|.+++|++.+|.
T Consensus 529 TdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 529 TNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp ETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred cchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 99999999998 667999999999999999999999999999999999998873
No 55
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4e-32 Score=283.67 Aligned_cols=303 Identities=15% Similarity=0.131 Sum_probs=209.9
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEcCCCchhhHHHHHhHhc-----CCCeEEEeCcHHHHHHHHHHHHHHc--CCce
Q 011387 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEK--GIAG 105 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l----~~~dvlv~apTGsGKTl~~~lp~l~-----~~~~~lvl~P~~~L~~q~~~~l~~~--~~~~ 105 (487)
..|+|+|.++++.+. .++++++.++||+|||++++..+.. ..+++|||+| .+|+.||.++++++ +...
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceE
Confidence 369999999998763 5789999999999999986543321 2468999999 57999999999986 3444
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHH
Q 011387 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (487)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~ 185 (487)
..+.+.... ......+++++|++.+..... .....++++|+||||.+...+. ...
T Consensus 115 ~~~~g~~~~-----------~~~~~~~ivi~t~~~l~~~~~-------l~~~~~~~vIvDEaH~~kn~~~-------~~~ 169 (500)
T 1z63_A 115 AVFHEDRSK-----------IKLEDYDIILTTYAVLLRDTR-------LKEVEWKYIVIDEAQNIKNPQT-------KIF 169 (500)
T ss_dssp EECSSSTTS-----------CCGGGSSEEEEEHHHHTTCHH-------HHTCCEEEEEEETGGGGSCTTS-------HHH
T ss_pred EEEecCchh-----------ccccCCcEEEeeHHHHhccch-------hcCCCcCEEEEeCccccCCHhH-------HHH
Confidence 444443211 111236788888776655322 2234689999999999976441 223
Q ss_pred HHHHhCCCCcEEEEecCCChHHHHHHHHHhcCC----------------------------------CCeEEecC-----
Q 011387 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQ----------------------------------NPLVLKSS----- 226 (487)
Q Consensus 186 ~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~----------------------------------~~~~~~~~----- 226 (487)
.....++....+++||||..+...++...+.+- .+.+++..
T Consensus 170 ~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~ 249 (500)
T 1z63_A 170 KAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKA 249 (500)
T ss_dssp HHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHH
T ss_pred HHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccc
Confidence 333445666789999999765444443322111 12222211
Q ss_pred --CCCCcceEEEEeeCc--------------------------------------------------------hhhHHHH
Q 011387 227 --FNRPNLFYEVRYKDL--------------------------------------------------------LDDAYAD 248 (487)
Q Consensus 227 --~~~~~~~~~v~~~~~--------------------------------------------------------~~~~~~~ 248 (487)
...|........... ...++..
T Consensus 250 ~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~ 329 (500)
T 1z63_A 250 IINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIR 329 (500)
T ss_dssp HHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHH
T ss_pred hhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHH
Confidence 112222222211110 0123334
Q ss_pred HHHHHHhC--CCceEEEEecccchHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcC-CCc-EEEEcCccccccc
Q 011387 249 LCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVAFGMGID 323 (487)
Q Consensus 249 l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~-vLVaT~~~~~GiD 323 (487)
+.+++... .+.++||||++++.++.+++.|.+. |+.+..+||+++.++|.++++.|++| ..+ +|++|+++++|+|
T Consensus 330 l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Gln 409 (500)
T 1z63_A 330 TMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGIN 409 (500)
T ss_dssp HHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCC
T ss_pred HHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCc
Confidence 44555443 6779999999999999999999885 99999999999999999999999988 455 8999999999999
Q ss_pred cCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEE--EEecc
Q 011387 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL--YYGMD 365 (487)
Q Consensus 324 ip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~--~~~~~ 365 (487)
++++++||++|+|+++..|.|++||++|.|+...+.+ ++...
T Consensus 410 l~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 410 LTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred hhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 9999999999999999999999999999998776644 44444
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=2.8e-29 Score=268.79 Aligned_cols=314 Identities=13% Similarity=0.136 Sum_probs=206.3
Q ss_pred CCcHHHHHHHHHHH---------cCCCEEEEcCCCchhhHHHHHhHh---cC-------CCeEEEeCcHHHHHHHHHHHH
Q 011387 38 QFRDKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCYQIPAL---AK-------PGIVLVVSPLIALMENQVIGL 98 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l---------~~~dvlv~apTGsGKTl~~~lp~l---~~-------~~~~lvl~P~~~L~~q~~~~l 98 (487)
.++|+|.+++..+. .++.+++..+||+|||+..+..+. .. ..++|||+|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 69999999999874 345788999999999987654432 11 2469999997 8999999999
Q ss_pred HHc---CCceEEecCCCCHHHHHHHHHHHhcC--CCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEecccccccc
Q 011387 99 KEK---GIAGEFLSSTQTMQVKTKIYEDLDSG--KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (487)
Q Consensus 99 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~ 173 (487)
.+. .+....+.++................ ....+++++|++.+ ...........++++|+||||++...
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l------~~~~~~l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETF------RLHAEVLHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHH------HHHTTTTTTSCCCEEEETTGGGCCTT
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHH------HhhHHHhhcCCccEEEEECceecCCh
Confidence 885 23444444443322222222222211 11345655555433 23333344456899999999999753
Q ss_pred CCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcC------------------------------------
Q 011387 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL------------------------------------ 217 (487)
Q Consensus 174 g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~------------------------------------ 217 (487)
. .........++....+++||||..+...+++..+..
T Consensus 208 ~-------~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 280 (644)
T 1z3i_X 208 D-------NQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG 280 (644)
T ss_dssp C-------HHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHH
T ss_pred h-------hHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHH
Confidence 3 222222333455678999999965432211111000
Q ss_pred ----------CCCeEEecC-----CCCCcceEEEEeeC------------------------------------------
Q 011387 218 ----------QNPLVLKSS-----FNRPNLFYEVRYKD------------------------------------------ 240 (487)
Q Consensus 218 ----------~~~~~~~~~-----~~~~~~~~~v~~~~------------------------------------------ 240 (487)
-.+.+++.. ...|.....+....
T Consensus 281 ~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c 360 (644)
T 1z3i_X 281 EQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLC 360 (644)
T ss_dssp HHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHh
Confidence 000011000 00111111111100
Q ss_pred -----------------------------------chhhHHHHH---HHHHHhCCCceEEEEecccchHHHHHHHHHhCC
Q 011387 241 -----------------------------------LLDDAYADL---CSVLKANGDTCAIVYCLERTTCDELSAYLSAGG 282 (487)
Q Consensus 241 -----------------------------------~~~~~~~~l---~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g 282 (487)
....++..+ ...++...+.++||||++++.++.+++.|...|
T Consensus 361 ~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g 440 (644)
T 1z3i_X 361 NHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRR 440 (644)
T ss_dssp HCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCC
Confidence 001122222 333333467899999999999999999999999
Q ss_pred CceEEecCCCCHHHHHHHHHHHhcCCCc---EEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEE
Q 011387 283 ISCAAYHAGLNDKARSSVLDDWISSRKQ---VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359 (487)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~---vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i 359 (487)
+.+..+||+++.++|.++++.|.+|+.. +|++|.++++|||++++++||+||+|+++..+.|++||++|.|+...+.
T Consensus 441 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~ 520 (644)
T 1z3i_X 441 YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 520 (644)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceE
Confidence 9999999999999999999999998764 8999999999999999999999999999999999999999999877655
Q ss_pred EE--Eecc
Q 011387 360 LY--YGMD 365 (487)
Q Consensus 360 ~~--~~~~ 365 (487)
++ +...
T Consensus 521 v~~lv~~~ 528 (644)
T 1z3i_X 521 IYRLLSTG 528 (644)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 43 4444
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-29 Score=277.59 Aligned_cols=326 Identities=18% Similarity=0.166 Sum_probs=219.8
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEcCCCchhhHHHHHhHh------cCCCeEEEeCcHHHHHHHHHHHHHHc--CCc
Q 011387 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPLIALMENQVIGLKEK--GIA 104 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l----~~~dvlv~apTGsGKTl~~~lp~l------~~~~~~lvl~P~~~L~~q~~~~l~~~--~~~ 104 (487)
.+++|+|.+++..++ .++++++..+||+|||+..+..+. ...+.+|||+| .+|+.||.+++.+. +..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 379999999998766 778999999999999987654332 23678999999 78899999999885 445
Q ss_pred eEEecCCCCHHHHHHHHHHHh------cCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCCh
Q 011387 105 GEFLSSTQTMQVKTKIYEDLD------SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (487)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~ 178 (487)
+....+............... ......+++++|++.+.. .........+++|||||||++...+
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~------~~~~l~~~~w~~vIvDEaH~lkn~~---- 383 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILK------DRAELGSIKWQFMAVDEAHRLKNAE---- 383 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHH------THHHHHTSEEEEEEETTGGGGCCSS----
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHh------hHHHHhcCCcceeehhhhhhhcCch----
Confidence 555554433222211111000 122346787777776532 2222333458999999999996543
Q ss_pred HHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhcCCC-------------------------------CeEEecC-
Q 011387 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN-------------------------------PLVLKSS- 226 (487)
Q Consensus 179 ~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~-------------------------------~~~~~~~- 226 (487)
..+......++....+++||||..+...++...+..-. +.+++..
T Consensus 384 ---s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 460 (800)
T 3mwy_W 384 ---SSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLK 460 (800)
T ss_dssp ---SHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCG
T ss_pred ---hHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhH
Confidence 23333344455556799999996544444433332111 1111100
Q ss_pred ----CCCCcceEEEEeeCc-------------------------------------------------------------
Q 011387 227 ----FNRPNLFYEVRYKDL------------------------------------------------------------- 241 (487)
Q Consensus 227 ----~~~~~~~~~v~~~~~------------------------------------------------------------- 241 (487)
...|.....+.....
T Consensus 461 ~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 540 (800)
T 3mwy_W 461 KDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDG 540 (800)
T ss_dssp GGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC---
T ss_pred HhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccc
Confidence 001111111111000
Q ss_pred -------------hhhHHHHHHHHHHhC--CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc
Q 011387 242 -------------LDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (487)
Q Consensus 242 -------------~~~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (487)
...++..|.+++... .+.++||||+.+..++.+.+.|...|+.+..+||+++.++|.++++.|.+
T Consensus 541 ~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~ 620 (800)
T 3mwy_W 541 KMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNS 620 (800)
T ss_dssp -CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSS
T ss_pred cccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhC
Confidence 012344455555442 56799999999999999999999999999999999999999999999998
Q ss_pred CCC---cEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEE--EEecc--hHHHHHHHHHh
Q 011387 307 SRK---QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL--YYGMD--DRRRMEFILSK 376 (487)
Q Consensus 307 g~~---~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~--~~~~~--d~~~~~~i~~~ 376 (487)
+.. .+|++|.+++.|||++.+++||+||+|+|+..+.|++||++|.|+...+.+ |+... |...+....++
T Consensus 621 ~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K 697 (800)
T 3mwy_W 621 PDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKK 697 (800)
T ss_dssp TTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred CCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHH
Confidence 654 499999999999999999999999999999999999999999998766544 45544 33334433333
No 58
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=2.7e-28 Score=261.00 Aligned_cols=201 Identities=21% Similarity=0.277 Sum_probs=149.8
Q ss_pred cEEEEecccccc-ccCCCChHHHHHHHHHHHhC-------------------CCCcEEEEecCCChHHHHHHHHHhcCCC
Q 011387 160 NLVAIDEAHCIS-SWGHDFRPSYRKLSSLRNYL-------------------PDVPILALTATAAPKVQKDVMESLCLQN 219 (487)
Q Consensus 160 ~~lViDEah~~~-~~g~~f~~~~~~l~~l~~~~-------------------~~~~~i~lSAT~~~~~~~~i~~~l~~~~ 219 (487)
.++||||+|++. +|+..++..+..+..+...- ...+++++|||+++..... .
T Consensus 327 ~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~~~~----~---- 398 (664)
T 1c4o_A 327 FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAH----S---- 398 (664)
T ss_dssp CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHHHHH----C----
T ss_pred cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHHHHh----h----
Confidence 478999999864 45544554444443333210 1467899999998654221 0
Q ss_pred CeEEec-----CCCCCcceEEEEeeCchhhHHHHHHHHHHhC--CCceEEEEecccchHHHHHHHHHhCCCceEEecCCC
Q 011387 220 PLVLKS-----SFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (487)
Q Consensus 220 ~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l 292 (487)
..++.. ....|. ..+... ......+...+... .+.++||||+|++.++.+++.|.+.|+.+..+||++
T Consensus 399 ~~~~~~~~r~~~l~~p~--i~v~~~---~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~ 473 (664)
T 1c4o_A 399 GRVVEQIIRPTGLLDPL--VRVKPT---ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHEL 473 (664)
T ss_dssp SEEEEECSCTTCCCCCE--EEEECS---TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred hCeeeeeeccCCCCCCe--EEEecc---cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCC
Confidence 111111 111222 222222 23444454444432 567999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCC-----CCCHHHHHHHHhccCCCCCCceEEEEEecchH
Q 011387 293 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (487)
Q Consensus 293 ~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~-----p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~ 367 (487)
++.+|.++++.|.+|+++|||||+++++|+|+|++++||+++. |.|..+|+||+|||||.| .|.+++|++..+.
T Consensus 474 ~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 474 DAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSE 552 (664)
T ss_dssp CHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCH
T ss_pred CHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCH
Confidence 9999999999999999999999999999999999999999997 899999999999999995 8999999988876
Q ss_pred HHHHHHH
Q 011387 368 RRMEFIL 374 (487)
Q Consensus 368 ~~~~~i~ 374 (487)
...+.+.
T Consensus 553 ~~~~~i~ 559 (664)
T 1c4o_A 553 AMQRAIE 559 (664)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 59
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=6e-28 Score=267.04 Aligned_cols=318 Identities=12% Similarity=0.079 Sum_probs=199.3
Q ss_pred hHHHHHHHHHHcC------CCCCcHHHHHHHHHHHc--------------CCCEEEEcCCCchhhHHHHHhHhc------
Q 011387 23 KEALVKLLRWHFG------HAQFRDKQLDAIQAVLS--------------GRDCFCLMPTGGGKSMCYQIPALA------ 76 (487)
Q Consensus 23 ~~~~~~~l~~~fg------~~~~~~~Q~~~i~~~l~--------------~~dvlv~apTGsGKTl~~~lp~l~------ 76 (487)
.+.+.+.+.+..- ...|||+|.++++.++. +++.+++++||||||+++ ++++.
T Consensus 250 ~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~ 328 (1038)
T 2w00_A 250 KHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELD 328 (1038)
T ss_dssp HHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCT
T ss_pred hHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcC
Confidence 3456666665221 22599999999999875 368999999999999997 33332
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhh---
Q 011387 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--- 153 (487)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~--- 153 (487)
...++|||+|+++|+.|+.+.+..++... +.++..... ....+... ..+++++ |++.+..+.+.
T Consensus 329 ~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~--v~~~~s~~~---l~~~L~~~--~~~IiVt------Tiqkl~~~l~~~~~ 395 (1038)
T 2w00_A 329 FIDKVFFVVDRKDLDYQTMKEYQRFSPDS--VNGSENTAG---LKRNLDKD--DNKIIVT------TIQKLNNLMKAESD 395 (1038)
T ss_dssp TCCEEEEEECGGGCCHHHHHHHHTTSTTC--SSSSCCCHH---HHHHHHCS--SCCEEEE------EHHHHHHHHHHCCC
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHhcccc--cccccCHHH---HHHHhcCC--CCCEEEE------EHHHHHHHHhcccc
Confidence 13589999999999999999998875431 122222111 11222222 2455544 44444333221
Q ss_pred -hhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHH----HHHHHHhc------------
Q 011387 154 -HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ----KDVMESLC------------ 216 (487)
Q Consensus 154 -~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~----~~i~~~l~------------ 216 (487)
.......+||+||||+... | .....+...+|+.++++|||||..... ......++
T Consensus 396 ~~~~~~~~lvIiDEAHrs~~-~-------~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI 467 (1038)
T 2w00_A 396 LPVYNQQVVFIFDECHRSQF-G-------EAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAI 467 (1038)
T ss_dssp CGGGGSCEEEEEESCCTTHH-H-------HHHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHH
T ss_pred hhccccccEEEEEccchhcc-h-------HHHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHH
Confidence 1234578999999999642 1 123456788899999999999975321 01111111
Q ss_pred ---CCCCeEEecCCCCCcceE-EE--E--------e--eCchhhHHHHHHHH----HHhC--------CCceEEEEeccc
Q 011387 217 ---LQNPLVLKSSFNRPNLFY-EV--R--------Y--KDLLDDAYADLCSV----LKAN--------GDTCAIVYCLER 268 (487)
Q Consensus 217 ---~~~~~~~~~~~~~~~~~~-~v--~--------~--~~~~~~~~~~l~~~----l~~~--------~~~~~iIf~~s~ 268 (487)
...|..+......+.+.. .. . . .-..+..+..+... .... .+.++||||+|+
T Consensus 468 ~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~ 547 (1038)
T 2w00_A 468 RDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSV 547 (1038)
T ss_dssp HHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSH
T ss_pred hCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCH
Confidence 111111100000000000 00 0 0 00011222333322 2111 345799999999
Q ss_pred chHHHHHHHHHhCC------------Cce-EEecCC----------C----------CH---------------------
Q 011387 269 TTCDELSAYLSAGG------------ISC-AAYHAG----------L----------ND--------------------- 294 (487)
Q Consensus 269 ~~~~~l~~~L~~~g------------~~~-~~~h~~----------l----------~~--------------------- 294 (487)
..|..+++.|.+.+ +++ ..+|++ + ++
T Consensus 548 ~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~ 627 (1038)
T 2w00_A 548 DAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNF 627 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccc
Confidence 99999999998754 444 455642 2 22
Q ss_pred --------HHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCC----ceEEEEE
Q 011387 295 --------KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP----SKSLLYY 362 (487)
Q Consensus 295 --------~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~----g~~i~~~ 362 (487)
..|..++++|++|+++|||+|+++.+|+|+|.+ .++++|.|.+...|+|++||++|.+.. |.++.|.
T Consensus 628 ~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~ 706 (1038)
T 2w00_A 628 STDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFR 706 (1038)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESS
T ss_pred cccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcc
Confidence 147889999999999999999999999999999 678899999999999999999998753 5555554
Q ss_pred e
Q 011387 363 G 363 (487)
Q Consensus 363 ~ 363 (487)
.
T Consensus 707 ~ 707 (1038)
T 2w00_A 707 D 707 (1038)
T ss_dssp C
T ss_pred c
Confidence 4
No 60
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=3.6e-27 Score=208.35 Aligned_cols=152 Identities=21% Similarity=0.367 Sum_probs=137.2
Q ss_pred CCCCCcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHh
Q 011387 226 SFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305 (487)
Q Consensus 226 ~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~ 305 (487)
+...+++...+.... ...++..|.++++...++++||||++++.++.+++.|.+.|+.+..+||+|++.+|..+++.|.
T Consensus 4 ~~~~~~i~~~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 4 GLTTRNIEHAVIQVR-EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp --CCCCEEEEEEECC-GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCcccceEEEEECC-hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 344566665555443 3578899999998888889999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcc
Q 011387 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (487)
Q Consensus 306 ~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (487)
+|+.+|||||+++++|+|+|++++||+|++|++...|+||+||+||.|++|.+++|+.+.|...++.+.+...
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999999998888876543
No 61
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=2e-26 Score=246.51 Aligned_cols=170 Identities=21% Similarity=0.286 Sum_probs=132.2
Q ss_pred CCcEEEEecCCChHHHHHHHHHhcCCCCeEE--e-cCCCCCcceEEEEeeCchhhHHHHHHHHHHh--CCCceEEEEecc
Q 011387 193 DVPILALTATAAPKVQKDVMESLCLQNPLVL--K-SSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLE 267 (487)
Q Consensus 193 ~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~--~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s 267 (487)
..+++++|||+++..... . ...... . .....|. +.+... ......+...+.. ..+.++||||+|
T Consensus 386 ~~q~i~~SAT~~~~~~~~-----~-~~~~~~~~r~~~l~~p~--i~v~~~---~~~~~~Ll~~l~~~~~~~~~vlVf~~t 454 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH-----T-DEMVEQIIRPTGLLDPL--IDVRPI---EGQIDDLIGEIQARIERNERVLVTTLT 454 (661)
T ss_dssp CSEEEEECSSCCHHHHHH-----C-SSCEEECCCTTCCCCCE--EEEECS---TTHHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred CCCEEEEecCCChhHHHh-----h-hCeeeeeecccCCCCCe--EEEecc---cchHHHHHHHHHHHHhcCCeEEEEECC
Confidence 567899999998654221 0 111110 0 0111222 222222 2344455444443 256789999999
Q ss_pred cchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCC-----CCCHHHH
Q 011387 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----PKSMEAF 342 (487)
Q Consensus 268 ~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~-----p~s~~~y 342 (487)
++.++.+++.|.+.|+.+..+||++++.+|.++++.|.+|+++|||||+++++|+|+|++++||+++. |.|.++|
T Consensus 455 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~ 534 (661)
T 2d7d_A 455 KKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 534 (661)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred HHHHhccCCCCCCceEEEEEecchHHHHHHHH
Q 011387 343 YQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (487)
Q Consensus 343 ~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~ 374 (487)
+||+||+||. ..|.+++|+++.+....+.+.
T Consensus 535 iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 535 IQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 9999999998 689999999988776555443
No 62
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.95 E-value=5.5e-27 Score=221.08 Aligned_cols=193 Identities=19% Similarity=0.246 Sum_probs=150.0
Q ss_pred cccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc-----------CCCe
Q 011387 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPGI 80 (487)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~-----------~~~~ 80 (487)
.....|.++++++++.+.+++ +|+..|+++|.++++.+++|+|+++.||||+|||++|++|++. .+++
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 104 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIAR-QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI 104 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCS
T ss_pred CccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCE
Confidence 345678889999999999997 7999999999999999999999999999999999999999874 2678
Q ss_pred EEEeCcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhh
Q 011387 81 VLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIH 154 (487)
Q Consensus 81 ~lvl~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~ 154 (487)
+||++|+++|+.|+.+.++++ ++....+.++........... .+ .+++++||+ .+..+. ...
T Consensus 105 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~---~~I~v~Tp~------~l~~~l~~~~~ 172 (242)
T 3fe2_A 105 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---RG---VEICIATPG------RLIDFLECGKT 172 (242)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---HC---CSEEEECHH------HHHHHHHHTSC
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---CC---CCEEEECHH------HHHHHHHcCCC
Confidence 999999999999998888774 777777777776655433222 11 456555554 443332 233
Q ss_pred hcCCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHhcCCCCeEEe
Q 011387 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (487)
Q Consensus 155 ~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (487)
....++++|+||||++.+|| |++.+..+ .+.+ ++.|+++||||+++.+.+.+...+ .++..+.
T Consensus 173 ~~~~~~~lViDEah~l~~~~--~~~~~~~i---~~~~~~~~q~~~~SAT~~~~~~~~~~~~l--~~~~~i~ 236 (242)
T 3fe2_A 173 NLRRTTYLVLDEADRMLDMG--FEPQIRKI---VDQIRPDRQTLMWSATWPKEVRQLAEDFL--KDYIHIN 236 (242)
T ss_dssp CCTTCCEEEETTHHHHHHTT--CHHHHHHH---HTTSCSSCEEEEEESCCCHHHHHHHHHHC--SSCEEEE
T ss_pred CcccccEEEEeCHHHHhhhC--cHHHHHHH---HHhCCccceEEEEEeecCHHHHHHHHHHC--CCCEEEE
Confidence 46779999999999999988 77666554 4444 478999999999999877666654 4555443
No 63
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=207.82 Aligned_cols=151 Identities=21% Similarity=0.331 Sum_probs=133.6
Q ss_pred CCcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC
Q 011387 229 RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (487)
Q Consensus 229 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (487)
.+++...+...+....++..|.++++...++++||||++++.++.+++.|.+.|+.+..+||+|++.+|..+++.|++|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 34566556555544568999999998888889999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCccccccccCCCcEEEEeCCC------CCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhccc
Q 011387 309 KQVVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (487)
Q Consensus 309 ~~vLVaT~~~~~GiDip~v~~VI~~~~p------~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (487)
.+|||||+++++|+|+|++++||+||+| .+...|+||+||+||.|+.|.+++|+.+.+...+..+.+....
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999 9999999999999999999999999999998888888776543
No 64
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=1.4e-26 Score=213.47 Aligned_cols=139 Identities=27% Similarity=0.404 Sum_probs=129.8
Q ss_pred hhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccc
Q 011387 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (487)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~G 321 (487)
...++..|.++++...++++||||++++.++.+++.|.+.|+.+..+||+|++++|..+++.|.+|+.+|||||+++++|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 36789999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcccC
Q 011387 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (487)
Q Consensus 322 iDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~ 380 (487)
||+|++++||+|++|++.+.|+||+||+||.|++|.|++|+++.|...++.+.+.....
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999888887765543
No 65
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.94 E-value=7.2e-27 Score=218.20 Aligned_cols=188 Identities=21% Similarity=0.307 Sum_probs=138.8
Q ss_pred ccCCC-CChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc------------CCCeE
Q 011387 15 QKNKP-LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------------KPGIV 81 (487)
Q Consensus 15 ~~~~~-~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~------------~~~~~ 81 (487)
..|.+ +++++++.+.|.+ +|+.+|+++|.++++.+++|+|+++.||||+|||++|++|++. .+.++
T Consensus 19 ~~f~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~ 97 (228)
T 3iuy_A 19 CRFKDAFQQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGM 97 (228)
T ss_dssp CSHHHHHTTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSE
T ss_pred hhHhhhhccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcE
Confidence 33444 6788899999998 6999999999999999999999999999999999999999875 46789
Q ss_pred EEeCcHHHHHHHHHHHHHHc---CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhhc
Q 011387 82 LVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSR 156 (487)
Q Consensus 82 lvl~P~~~L~~q~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~~ 156 (487)
+|++|+++|+.|+.+.++.+ ++....+.++....... ..+.. ..+++++||+ .+..+. .....
T Consensus 98 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~iiv~Tp~------~l~~~~~~~~~~~ 165 (228)
T 3iuy_A 98 LVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI---EDISK---GVDIIIATPG------RLNDLQMNNSVNL 165 (228)
T ss_dssp EEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH---HHHHS---CCSEEEECHH------HHHHHHHTTCCCC
T ss_pred EEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHH---HHhcC---CCCEEEECHH------HHHHHHHcCCcCc
Confidence 99999999999999999985 55666665554433222 12222 2566555554 443332 23346
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCcEEEEecCCChHHHHHHHHHhcCCCCeE
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLV 222 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~ 222 (487)
..++++|+||||++.+|| |++.+..+ ...+ ++.+++++|||+++.+.+.+.. .+.+|..
T Consensus 166 ~~~~~lViDEah~~~~~~--~~~~~~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~--~l~~p~~ 225 (228)
T 3iuy_A 166 RSITYLVIDEADKMLDME--FEPQIRKI---LLDVRPDRQTVMTSATWPDTVRQLALS--YLKDPMI 225 (228)
T ss_dssp TTCCEEEECCHHHHHHTT--CHHHHHHH---HHHSCSSCEEEEEESCCCHHHHHHHHT--TCSSCEE
T ss_pred ccceEEEEECHHHHhccc--hHHHHHHH---HHhCCcCCeEEEEEeeCCHHHHHHHHH--HCCCCEE
Confidence 679999999999999987 77666655 3334 4789999999999998775544 3445544
No 66
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.94 E-value=1.7e-26 Score=214.24 Aligned_cols=197 Identities=16% Similarity=0.219 Sum_probs=144.7
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCcHH
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~ 88 (487)
..|+++++++++.+.|++ +|+..|+++|+++++.+++|+++++.+|||+|||++|++|++.. +.+++|++|++
T Consensus 4 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp CCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 357788999999999987 79999999999999999999999999999999999999998753 56899999999
Q ss_pred HHHHHHHHHHHHc--------CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCC
Q 011387 89 ALMENQVIGLKEK--------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGL 158 (487)
Q Consensus 89 ~L~~q~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~ 158 (487)
+|+.|+.+.++++ ++....+.++..... .........+++++||+. +..+.. ......
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~Iiv~Tp~~------l~~~l~~~~~~~~~ 150 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQK------ALEKLNVQPHIVIGTPGR------INDFIREQALDVHT 150 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHH------TTCCCSSCCSEEEECHHH------HHHHHHTTCCCGGG
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHH------HHHHcCCCCCEEEeCHHH------HHHHHHcCCCCcCc
Confidence 9999999998874 455555555543221 111111235565555553 333322 233566
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCc
Q 011387 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN 231 (487)
Q Consensus 159 l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 231 (487)
++++|+||||++.+|| |. ..+..+...++ +.+++++|||+++++.+.+... +.+|..+....++++
T Consensus 151 ~~~lViDEah~~~~~~--~~---~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~p~~~~~~~~~~~ 217 (219)
T 1q0u_A 151 AHILVVDEADLMLDMG--FI---TDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKY--MENPTFVHVLEHHHH 217 (219)
T ss_dssp CCEEEECSHHHHHHTT--CH---HHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHH--CSSCEEEECC-----
T ss_pred ceEEEEcCchHHhhhC--hH---HHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHH--cCCCeEEEeeccccc
Confidence 8999999999999988 44 44555666665 6889999999999887755443 467776665555443
No 67
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=1.8e-26 Score=204.36 Aligned_cols=136 Identities=21% Similarity=0.371 Sum_probs=124.0
Q ss_pred hhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcccccc
Q 011387 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (487)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~Gi 322 (487)
..+...|.++++..+++++||||++++.++.+++.|.+.|+.+..+||++++.+|.++++.|.+|+.+|||||+++++|+
T Consensus 15 ~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~ 94 (165)
T 1fuk_A 15 EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGI 94 (165)
T ss_dssp GGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTC
T ss_pred hhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCC
Confidence 34888999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcc
Q 011387 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (487)
Q Consensus 323 Dip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (487)
|+|++++||+||+|++...|+||+||+||.|++|.|++++.+.|...+..+.+...
T Consensus 95 d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (165)
T 1fuk_A 95 DVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 150 (165)
T ss_dssp CCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSS
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999988888776544
No 68
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.94 E-value=4.5e-26 Score=217.29 Aligned_cols=183 Identities=25% Similarity=0.327 Sum_probs=137.6
Q ss_pred ccCCCCC--hhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc----------CCCeEE
Q 011387 15 QKNKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGIVL 82 (487)
Q Consensus 15 ~~~~~~~--l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~----------~~~~~l 82 (487)
..|..++ +++++.+.|++ +|+.+|+++|.++++.++.|+|+++.||||+|||++|++|++. .+.++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEE
Confidence 3455555 89999999998 7999999999999999999999999999999999999999884 477899
Q ss_pred EeCcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH-h--hhh
Q 011387 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K--IHS 155 (487)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~-~--~~~ 155 (487)
|++|+++|+.|+.+.++++ +.....+.++......... +..+ .+++++|| +.+..+. . ...
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~---~~Iiv~Tp------~~l~~~~~~~~~~~ 198 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG---INIIVATP------GRLLDHMQNTPGFM 198 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC---CSEEEECH------HHHHHHHHHCTTCC
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC---CCEEEEcH------HHHHHHHHccCCcc
Confidence 9999999999999999885 4555666666555433222 2222 55655555 4443332 2 234
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHh
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESL 215 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l 215 (487)
...++++||||||++.+|| |++.+.. +...++ +.++++||||+++.+.......+
T Consensus 199 ~~~l~~lViDEah~l~~~~--~~~~l~~---i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l 254 (262)
T 3ly5_A 199 YKNLQCLVIDEADRILDVG--FEEELKQ---IIKLLPTRRQTMLFSATQTRKVEDLARISL 254 (262)
T ss_dssp CTTCCEEEECSHHHHHHTT--CHHHHHH---HHHHSCSSSEEEEECSSCCHHHHHHHHHHC
T ss_pred cccCCEEEEcChHHHhhhh--HHHHHHH---HHHhCCCCCeEEEEEecCCHHHHHHHHHHc
Confidence 5679999999999999998 6765544 445554 68899999999999877554443
No 69
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.94 E-value=5.5e-26 Score=213.32 Aligned_cols=191 Identities=21% Similarity=0.304 Sum_probs=144.1
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc----------CCCeEE
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGIVL 82 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~----------~~~~~l 82 (487)
....|.++++++.+.+.|++ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++. .+.+++
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~l 101 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 101 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred ccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEE
Confidence 34568889999999999997 7999999999999999999999999999999999999999874 267899
Q ss_pred EeCcHHHHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHH-Hh--hhh
Q 011387 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KK--IHS 155 (487)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l-~~--~~~ 155 (487)
|++|+++|+.|+.+.+++++ +....+.++......... + . ..+++++||+.+ ..+ .. ...
T Consensus 102 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~--~~~iiv~Tp~~l------~~~l~~~~~~~ 168 (236)
T 2pl3_A 102 IISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER---I--N--NINILVCTPGRL------LQHMDETVSFH 168 (236)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH---H--T--TCSEEEECHHHH------HHHHHHCSSCC
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh---C--C--CCCEEEECHHHH------HHHHHhcCCcc
Confidence 99999999999999999864 566666655443322211 1 1 256665555543 333 22 234
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEe
Q 011387 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (487)
Q Consensus 156 ~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (487)
...++++|+||||++.+|| |.. .+..+...++ +.++++||||+++.+.+ .....+.+|..+.
T Consensus 169 ~~~~~~lViDEah~~~~~~--~~~---~~~~i~~~~~~~~~~l~~SAT~~~~~~~--~~~~~~~~p~~i~ 231 (236)
T 2pl3_A 169 ATDLQMLVLDEADRILDMG--FAD---TMNAVIENLPKKRQTLLFSATQTKSVKD--LARLSLKNPEYVW 231 (236)
T ss_dssp CTTCCEEEETTHHHHHHTT--THH---HHHHHHHTSCTTSEEEEEESSCCHHHHH--HHHHSCSSCEEEE
T ss_pred cccccEEEEeChHHHhcCC--cHH---HHHHHHHhCCCCCeEEEEEeeCCHHHHH--HHHHhCCCCEEEE
Confidence 5678999999999999988 554 4445566665 67899999999998876 3344556676554
No 70
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=4.2e-26 Score=203.21 Aligned_cols=135 Identities=18% Similarity=0.354 Sum_probs=126.3
Q ss_pred hhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcccccc
Q 011387 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (487)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~Gi 322 (487)
..++..|.++++..++.++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|.+|+.+|||||+++++|+
T Consensus 16 ~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 95 (172)
T 1t5i_A 16 NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGM 95 (172)
T ss_dssp GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTC
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCc
Confidence 57889999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecc-hHHHHHHHHHhc
Q 011387 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKN 377 (487)
Q Consensus 323 Dip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~-d~~~~~~i~~~~ 377 (487)
|+|++++||+||+|++.+.|+||+||+||.|+.|.+++|+++. +...++.+.+..
T Consensus 96 di~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~ 151 (172)
T 1t5i_A 96 DIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRF 151 (172)
T ss_dssp CGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHH
T ss_pred chhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876 456666666543
No 71
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=7.2e-26 Score=207.85 Aligned_cols=188 Identities=23% Similarity=0.234 Sum_probs=143.8
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCcHH
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~ 88 (487)
..|+++++++++.+.|++ +|+..|+++|.++++.+++++++++.+|||+|||++|++|++.. +.+++|++|++
T Consensus 3 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp SSGGGSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 357889999999999997 79999999999999999999999999999999999999998753 45799999999
Q ss_pred HHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCCccE
Q 011387 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (487)
Q Consensus 89 ~L~~q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l~~ 161 (487)
+|+.|+.+.++++ +.......++........ .+ ....+++++||+.+ ..+.. ......+++
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~---~~~~~i~v~T~~~l------~~~~~~~~~~~~~~~~ 149 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL---DDTVHVVIATPGRI------LDLIKKGVAKVDHVQM 149 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT---TSCCSEEEECHHHH------HHHHHTTCSCCTTCCE
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc---CCCCCEEEeCHHHH------HHHHHcCCcCcccCCE
Confidence 9999999999874 456666666665443221 11 12356766666543 22222 234567899
Q ss_pred EEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeE
Q 011387 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLV 222 (487)
Q Consensus 162 lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~ 222 (487)
+|+||||++.+++ |... +..+...++ +.+++++|||+++.+.+.+...+ .+|..
T Consensus 150 lViDEah~~~~~~--~~~~---l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l--~~p~~ 204 (206)
T 1vec_A 150 IVLDEADKLLSQD--FVQI---MEDIILTLPKNRQILLYSATFPLSVQKFMNSHL--EKPYE 204 (206)
T ss_dssp EEEETHHHHTSTT--THHH---HHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHC--SSCEE
T ss_pred EEEEChHHhHhhC--cHHH---HHHHHHhCCccceEEEEEeeCCHHHHHHHHHHc--CCCeE
Confidence 9999999998865 5544 444556666 78999999999998877666654 34443
No 72
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=6e-26 Score=204.59 Aligned_cols=150 Identities=21% Similarity=0.375 Sum_probs=121.4
Q ss_pred CCCcceEEEEeeCchhhHHHHHHHHHHhC-CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc
Q 011387 228 NRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (487)
Q Consensus 228 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (487)
..+++...+.... ..+++..|.++++.. ++.++||||++++.++.+++.|...|+.+..+||++++.+|.++++.|.+
T Consensus 16 ~~~~i~q~~~~v~-~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 16 TSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp CCTTEEEEEEECC-GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCceEEEEEeC-cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 3456666555543 357888899999887 57889999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcc
Q 011387 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (487)
Q Consensus 307 g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (487)
|+.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.|+.|.+++|+++.|...++.+++...
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 166 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 166 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888777766543
No 73
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.94 E-value=8.4e-26 Score=213.77 Aligned_cols=192 Identities=23% Similarity=0.295 Sum_probs=147.2
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCc
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P 86 (487)
....|+.+++++.+.+.|++ +|+..|+++|.++++.+++|+++++.||||+|||++|++|++.. +.++||++|
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~P 119 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTP 119 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECS
T ss_pred ccCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeC
Confidence 34568899999999999997 79999999999999999999999999999999999999998753 567999999
Q ss_pred HHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh---hhhcCCc
Q 011387 87 LIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLL 159 (487)
Q Consensus 87 ~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~---~~~~~~l 159 (487)
+++|+.|+.+.++++ ++....+.++......... +.. ..+++++||+ .+..+.. ......+
T Consensus 120 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~---~~~I~v~Tp~------~l~~~l~~~~~~~l~~~ 187 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA---LAK---KPHIIIATPG------RLIDHLENTKGFNLRAL 187 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHH---HHT---CCSEEEECHH------HHHHHHHHSTTCCCTTC
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHH---hcC---CCCEEEECHH------HHHHHHHcCCCcCcccc
Confidence 999999999998875 6777777777665433221 111 2566555555 4333322 2346678
Q ss_pred cEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEe
Q 011387 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (487)
Q Consensus 160 ~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (487)
+++|+||||++.+++ |+..+.. +...++ +.++++||||+++.+.+.+... +.+|..+.
T Consensus 188 ~~lViDEah~l~~~~--~~~~l~~---i~~~~~~~~~~l~~SAT~~~~v~~~~~~~--l~~p~~i~ 246 (249)
T 3ber_A 188 KYLVMDEADRILNMD--FETEVDK---ILKVIPRDRKTFLFSATMTKKVQKLQRAA--LKNPVKCA 246 (249)
T ss_dssp CEEEECSHHHHHHTT--CHHHHHH---HHHSSCSSSEEEEEESSCCHHHHHHHHHH--CSSCEEEE
T ss_pred CEEEEcChhhhhccC--hHHHHHH---HHHhCCCCCeEEEEeccCCHHHHHHHHHH--CCCCEEEE
Confidence 999999999999987 6665544 445554 7899999999999887744443 45665543
No 74
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.94 E-value=5.3e-26 Score=212.60 Aligned_cols=191 Identities=18% Similarity=0.241 Sum_probs=143.5
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCc
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P 86 (487)
....|+.+++++++.+.|++ +||..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. +.++||++|
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 100 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAP 100 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 34568889999999999987 79999999999999999999999999999999999999998643 468999999
Q ss_pred HHHHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCCc
Q 011387 87 LIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (487)
Q Consensus 87 ~~~L~~q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l 159 (487)
+++|+.|+.+.++++ ++....+.++......... + ...+++++||+ .+..+.. ......+
T Consensus 101 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~----~~~~Iiv~Tp~------~l~~~~~~~~~~~~~~ 167 (230)
T 2oxc_A 101 TREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR---L----KKCHIAVGSPG------RIKQLIELDYLNPGSI 167 (230)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH---T----TSCSEEEECHH------HHHHHHHTTSSCGGGC
T ss_pred CHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh---c----cCCCEEEECHH------HHHHHHhcCCcccccC
Confidence 999999999999885 4566677766655443221 1 12566555554 4433322 2335568
Q ss_pred cEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEE
Q 011387 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (487)
Q Consensus 160 ~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (487)
+++|+||||++.++|. |++.+. .+...++ +.+++++|||+++.+.+.+.. .+.+|..+
T Consensus 168 ~~lViDEah~~~~~~~-~~~~~~---~i~~~~~~~~~~l~lSAT~~~~~~~~~~~--~~~~p~~i 226 (230)
T 2oxc_A 168 RLFILDEADKLLEEGS-FQEQIN---WIYSSLPASKQMLAVSATYPEFLANALTK--YMRDPTFV 226 (230)
T ss_dssp CEEEESSHHHHHSTTS-SHHHHH---HHHHHSCSSCEEEEEESCCCHHHHHHHTT--TCSSCEEE
T ss_pred CEEEeCCchHhhcCcc-hHHHHH---HHHHhCCCCCeEEEEEeccCHHHHHHHHH--HcCCCeEE
Confidence 8999999999999873 665544 4555666 778999999999887654333 34556544
No 75
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.94 E-value=8.5e-26 Score=212.21 Aligned_cols=192 Identities=19% Similarity=0.258 Sum_probs=138.7
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCc
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P 86 (487)
....|+++++++++.+.|+. +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. +.+++|++|
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 106 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAP 106 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred ccCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 34568889999999999987 79999999999999999999999999999999999999998753 568999999
Q ss_pred HHHHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCCcc
Q 011387 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLN 160 (487)
Q Consensus 87 ~~~L~~q~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l~ 160 (487)
+++|+.|+.+.++.++ +......++..... ....+..+. .+++++ ||+.+..+.. ......++
T Consensus 107 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~--~~Ilv~------Tp~~l~~~l~~~~~~~~~~~ 175 (237)
T 3bor_A 107 TRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEA--PHIVVG------TPGRVFDMLNRRYLSPKWIK 175 (237)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CC--CSEEEE------CHHHHHHHHHTTSSCSTTCC
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCC--CCEEEE------CHHHHHHHHHhCCcCcccCc
Confidence 9999999999998853 44444444432221 112222221 455444 5544433322 23456789
Q ss_pred EEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEE
Q 011387 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (487)
Q Consensus 161 ~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (487)
++|+||||++.+++ |...+ ..+...++ +.+++++|||+++.+.+.+...+ .+|..+
T Consensus 176 ~lViDEah~~~~~~--~~~~l---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l--~~p~~i 232 (237)
T 3bor_A 176 MFVLDEADEMLSRG--FKDQI---YEIFQKLNTSIQVVLLSATMPTDVLEVTKKFM--RDPIRI 232 (237)
T ss_dssp EEEEESHHHHHHTT--CHHHH---HHHHHHSCTTCEEEEECSSCCHHHHHHHHHHC--SSCEEE
T ss_pred EEEECCchHhhccC--cHHHH---HHHHHhCCCCCeEEEEEEecCHHHHHHHHHHC--CCCEEE
Confidence 99999999999887 55443 34444444 78999999999999877665544 455544
No 76
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=4.1e-25 Score=205.04 Aligned_cols=190 Identities=15% Similarity=0.219 Sum_probs=143.9
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC------CCeEEEeCcHH
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl~P~~ 88 (487)
..|+++++++++.+.|++ +|+..|+++|.++++.+++++|+++.+|||+|||++|++|++.. +.+++|++|++
T Consensus 14 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp CCSTTSCCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 358899999999999998 79999999999999999999999999999999999999998754 44899999999
Q ss_pred HHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh--hhhcCCccE
Q 011387 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (487)
Q Consensus 89 ~L~~q~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~--~~~~~~l~~ 161 (487)
+|+.|+.+.++++ ++....+.++......... +..+. .+++++||+. +..+.. ......+++
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~--~~i~v~T~~~------l~~~~~~~~~~~~~~~~ 161 (220)
T 1t6n_A 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNC--PHIVVGTPGR------ILALARNKSLNLKHIKH 161 (220)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSC--CSEEEECHHH------HHHHHHTTSSCCTTCCE
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCC--CCEEEeCHHH------HHHHHHhCCCCcccCCE
Confidence 9999999999886 6777777777665543322 22222 4565555553 333322 234567899
Q ss_pred EEEecccccccc-CCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEE
Q 011387 162 VAIDEAHCISSW-GHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (487)
Q Consensus 162 lViDEah~~~~~-g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (487)
+|+||||++.++ + |+. .+..+....+ +.+++++|||+++.+.+.... .+.+|..+
T Consensus 162 lViDEah~~~~~~~--~~~---~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~~~p~~i 218 (220)
T 1t6n_A 162 FILDECDKMLEQLD--MRR---DVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK--FMQDPMEI 218 (220)
T ss_dssp EEEESHHHHHSSHH--HHH---HHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT--TCSSCEEE
T ss_pred EEEcCHHHHhcccC--cHH---HHHHHHHhCCCcCeEEEEEeecCHHHHHHHHH--HcCCCeEE
Confidence 999999999874 3 443 3444555555 789999999999987663333 44556543
No 77
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.93 E-value=2.7e-25 Score=201.25 Aligned_cols=146 Identities=18% Similarity=0.353 Sum_probs=125.2
Q ss_pred CCcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC
Q 011387 229 RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (487)
Q Consensus 229 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (487)
.+++...+.... ...++..|.+++...+ .++||||++++.++.+++.|...|+.+..+||++++++|.++++.|++|+
T Consensus 27 ~~~i~q~~~~~~-~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~ 104 (191)
T 2p6n_A 27 SLDVIQEVEYVK-EEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK 104 (191)
T ss_dssp -CCSEEEEEECC-GGGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred CcCceEEEEEcC-hHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 345555554443 3578888999887754 57999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecc-hHHHHHHHHHh
Q 011387 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSK 376 (487)
Q Consensus 309 ~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~-d~~~~~~i~~~ 376 (487)
.+|||||+++++|+|+|++++||+||+|++.+.|+||+||+||.|++|.+++|+++. |...++.+.+.
T Consensus 105 ~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~ 173 (191)
T 2p6n_A 105 KDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKAL 173 (191)
T ss_dssp CSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999976 55555555443
No 78
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.93 E-value=4.1e-25 Score=202.88 Aligned_cols=188 Identities=18% Similarity=0.202 Sum_probs=140.6
Q ss_pred cCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---------CCCeEEEeCc
Q 011387 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---------KPGIVLVVSP 86 (487)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---------~~~~~lvl~P 86 (487)
.|+++++++++.+.|++ +|+..|+++|+++++.+++++++++.+|||+|||++|++|++. .+++++|++|
T Consensus 2 ~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P 80 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred ChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence 36778999999999998 7999999999999999999999999999999999999998864 2568999999
Q ss_pred HHHHHHHHHHHHHHc--CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhhcCCccEE
Q 011387 87 LIALMENQVIGLKEK--GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNLV 162 (487)
Q Consensus 87 ~~~L~~q~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~~~~l~~l 162 (487)
+++|+.|+.+.++++ .+....+.++.......... .. ..+++++||+ .+..+. .......++++
T Consensus 81 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~i~v~T~~------~l~~~~~~~~~~~~~~~~i 148 (207)
T 2gxq_A 81 TRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL---LR---GADAVVATPG------RALDYLRQGVLDLSRVEVA 148 (207)
T ss_dssp SHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH---HH---CCSEEEECHH------HHHHHHHHTSSCCTTCSEE
T ss_pred CHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh---hC---CCCEEEECHH------HHHHHHHcCCcchhhceEE
Confidence 999999999999986 34556666555443322211 11 1556555554 333332 23346679999
Q ss_pred EEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEE
Q 011387 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (487)
Q Consensus 163 ViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (487)
|+||||++.+++ |...+. .+....+ +.+++++|||+++.+.+..... +.+|..+
T Consensus 149 ViDEah~~~~~~--~~~~~~---~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~p~~i 203 (207)
T 2gxq_A 149 VLDEADEMLSMG--FEEEVE---ALLSATPPSRQTLLFSATLPSWAKRLAERY--MKNPVLI 203 (207)
T ss_dssp EEESHHHHHHTT--CHHHHH---HHHHTSCTTSEEEEECSSCCHHHHHHHHHH--CSSCEEE
T ss_pred EEEChhHhhccc--hHHHHH---HHHHhCCccCeEEEEEEecCHHHHHHHHHH--cCCCeEE
Confidence 999999998877 555444 4445554 7889999999998876644443 3456544
No 79
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.93 E-value=2.2e-25 Score=207.47 Aligned_cols=190 Identities=19% Similarity=0.235 Sum_probs=139.3
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc------CCCeEEEeCc
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~------~~~~~lvl~P 86 (487)
....|.++++++.+.+.|+. +|+..|+++|.++++.+++|+++++.+|||+|||++|++|++. .+.+++|++|
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAP 90 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred ccCChhhcCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEEC
Confidence 34568889999999999997 7999999999999999999999999999999999999999884 3568999999
Q ss_pred HHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHH--hhhhcCCcc
Q 011387 87 LIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLN 160 (487)
Q Consensus 87 ~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~--~~~~~~~l~ 160 (487)
+++|+.|+.+.++++ ++......++........ .+ ...+++++||+.+ ..+. .......++
T Consensus 91 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~----~~~~iiv~Tp~~l------~~~~~~~~~~~~~~~ 157 (224)
T 1qde_A 91 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GL----RDAQIVVGTPGRV------FDNIQRRRFRTDKIK 157 (224)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C----TTCSEEEECHHHH------HHHHHTTSSCCTTCC
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cC----CCCCEEEECHHHH------HHHHHhCCcchhhCc
Confidence 999999999999875 455555555543322211 11 1255655555543 3322 233456789
Q ss_pred EEEEeccccccccCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEE
Q 011387 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (487)
Q Consensus 161 ~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (487)
++|+||||++.+|+ |+..+. .+...++ +.+++++|||+++.+.+.+...+ .+|..+
T Consensus 158 ~iViDEah~~~~~~--~~~~l~---~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~p~~i 214 (224)
T 1qde_A 158 MFILDEADEMLSSG--FKEQIY---QIFTLLPPTTQVVLLSATMPNDVLEVTTKFM--RNPVRI 214 (224)
T ss_dssp EEEEETHHHHHHTT--CHHHHH---HHHHHSCTTCEEEEEESSCCHHHHHHHHHHC--SSCEEE
T ss_pred EEEEcChhHHhhhh--hHHHHH---HHHHhCCccCeEEEEEeecCHHHHHHHHHHC--CCCEEE
Confidence 99999999999887 555444 4444444 78899999999998877555544 455544
No 80
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=4.4e-25 Score=213.15 Aligned_cols=138 Identities=25% Similarity=0.396 Sum_probs=126.3
Q ss_pred hhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcccccc
Q 011387 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (487)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~Gi 322 (487)
..++..|.++++...++++||||++++.++.+++.|.+.|+.+..+||+|++++|..+++.|.+|+.+|||||+++++||
T Consensus 13 ~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gi 92 (300)
T 3i32_A 13 RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGL 92 (300)
T ss_dssp SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCST
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCc
Confidence 57888999999888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHhcccC
Q 011387 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (487)
Q Consensus 323 Dip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~ 380 (487)
|+|++++||+|++|++.+.|+||+||+||.|++|.|++|+++.+...++.+.+....+
T Consensus 93 di~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 93 DIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 150 (300)
T ss_dssp TCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCC
T ss_pred cccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999999999888888766544
No 81
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.93 E-value=1e-25 Score=218.93 Aligned_cols=189 Identities=19% Similarity=0.251 Sum_probs=140.4
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhHhcC------CCeEEEe
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVV 84 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~--~dvlv~apTGsGKTl~~~lp~l~~------~~~~lvl 84 (487)
+...|..+++++.+.+.|.. +||..|+++|.++++.++.| +|+++.||||||||++|++|++.. +.++||+
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil 168 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CcCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEE
Confidence 45678889999999999998 79999999999999999987 999999999999999999999853 4579999
Q ss_pred CcHHHHHHHHHHHHHHcC-----CceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh---hhhc
Q 011387 85 SPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSR 156 (487)
Q Consensus 85 ~P~~~L~~q~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~---~~~~ 156 (487)
+|+++|+.|+.+.++.++ +......++...... .....++ +|+||+.+..+.. ....
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~I------lV~TP~~l~~~l~~~~~~~l 233 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---------QKISEQI------VIGTPGTVLDWCSKLKFIDP 233 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---------CCCCCSE------EEECHHHHHHHHTTTCCCCG
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---------hcCCCCE------EEECHHHHHHHHHhcCCCCh
Confidence 999999999999988753 344444433321110 0112345 5556665544432 3345
Q ss_pred CCccEEEEeccccccc-cCCCChHHHHHHHHHHHhCC-CCcEEEEecCCChHHHHHHHHHhcCCCCeEEe
Q 011387 157 GLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (487)
Q Consensus 157 ~~l~~lViDEah~~~~-~g~~f~~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (487)
..+++|||||||++.+ +| |...+. .+...++ ++|+++||||+++.+...... .+.+|..+.
T Consensus 234 ~~l~~lVlDEad~l~~~~~--~~~~~~---~i~~~~~~~~q~i~~SAT~~~~v~~~a~~--~l~~p~~i~ 296 (300)
T 3fmo_B 234 KKIKVFVLDEADVMIATQG--HQDQSI---RIQRMLPRNCQMLLFSATFEDSVWKFAQK--VVPDPNVIK 296 (300)
T ss_dssp GGCSEEEETTHHHHHHSTT--HHHHHH---HHHTTSCTTCEEEEEESCCCHHHHHHHHH--HSSSCEEEE
T ss_pred hhceEEEEeCHHHHhhccC--cHHHHH---HHHHhCCCCCEEEEEeccCCHHHHHHHHH--HCCCCeEEE
Confidence 6799999999999987 55 554444 3444444 689999999999998775444 345666543
No 82
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.93 E-value=2.4e-25 Score=210.19 Aligned_cols=188 Identities=22% Similarity=0.247 Sum_probs=134.3
Q ss_pred ChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc-------CCCeEEEeCcHHHHHHH
Q 011387 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------KPGIVLVVSPLIALMEN 93 (487)
Q Consensus 21 ~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~-------~~~~~lvl~P~~~L~~q 93 (487)
++++++.+.|.+ +|+..|+++|.++++.+++|+|+++.||||+|||++|++|++. .+.+++|++|+++|+.|
T Consensus 35 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q 113 (245)
T 3dkp_A 35 KINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQ 113 (245)
T ss_dssp CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHH
Confidence 788899999998 6999999999999999999999999999999999999999874 35589999999999999
Q ss_pred HHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh----hhhcCCccEEEEe
Q 011387 94 QVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK----IHSRGLLNLVAID 165 (487)
Q Consensus 94 ~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~----~~~~~~l~~lViD 165 (487)
+.+.++++ ++....+.++. ....... .......+++++|| +.+..+.. ......++++|+|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~I~v~Tp------~~l~~~l~~~~~~~~~~~~~~lViD 182 (245)
T 3dkp_A 114 IHRELIKISEGTGFRIHMIHKAA---VAAKKFG--PKSSKKFDILVTTP------NRLIYLLKQDPPGIDLASVEWLVVD 182 (245)
T ss_dssp HHHHHHHHTTTSCCCEECCCHHH---HHHTTTS--TTSCCCCCEEEECH------HHHHHHHHSSSCSCCCTTCCEEEES
T ss_pred HHHHHHHHhcccCceEEEEecCc---cHHHHhh--hhhcCCCCEEEECH------HHHHHHHHhCCCCcccccCcEEEEe
Confidence 99999986 33333332211 1100000 11122356655554 44444432 2345678999999
Q ss_pred ccccccccC-CCChHHHHHHHHHHHhC--CCCcEEEEecCCChHHHHHHHHHhcCCCCeEEec
Q 011387 166 EAHCISSWG-HDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (487)
Q Consensus 166 Eah~~~~~g-~~f~~~~~~l~~l~~~~--~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~ 225 (487)
|||++.+|+ ..|+..+..+ .... ++.++++||||+++++.+..... +.++..+..
T Consensus 183 Eah~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~SAT~~~~v~~~~~~~--l~~p~~i~~ 240 (245)
T 3dkp_A 183 ESDKLFEDGKTGFRDQLASI---FLACTSHKVRRAMFSATFAYDVEQWCKLN--LDNVISVSI 240 (245)
T ss_dssp SHHHHHHHC--CHHHHHHHH---HHHCCCTTCEEEEEESSCCHHHHHHHHHH--SSSCEEEEE
T ss_pred ChHHhcccccccHHHHHHHH---HHhcCCCCcEEEEEeccCCHHHHHHHHHh--CCCCEEEEe
Confidence 999999976 3466555444 3332 47899999999999887744443 456665543
No 83
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.93 E-value=2.7e-25 Score=210.87 Aligned_cols=194 Identities=20% Similarity=0.249 Sum_probs=143.0
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC---------------
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------------- 77 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~--------------- 77 (487)
....|.++++++++.+.|+. +|+..|+++|.++++.+++|+|+++.||||+|||++|++|++..
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILL-ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTT-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred ccCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 34468889999999999987 79999999999999999999999999999999999999998742
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHh-
Q 011387 78 PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK- 152 (487)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~- 152 (487)
++++||++|+++|+.|+.+.++++ ++....+.++........ .+. ...+++++||+ .+..+..
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~---~~~~Ivv~Tp~------~l~~~l~~ 167 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---EVQ---MGCHLLVATPG------RLVDFIEK 167 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---HHS---SCCSEEEECHH------HHHHHHHT
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhC---CCCCEEEECHH------HHHHHHHc
Confidence 358999999999999999998875 355555665554433221 121 12566555555 4333322
Q ss_pred -hhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC---CCcEEEEecCCChHHHHHHHHHhcCCCCeEEe
Q 011387 153 -IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (487)
Q Consensus 153 -~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (487)
......++++|+||||++.++| |++.+..+.... ..+ +.++++||||+++.+.+.....+ .++..+.
T Consensus 168 ~~~~~~~~~~lViDEah~~~~~~--~~~~~~~i~~~~-~~~~~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~ 238 (253)
T 1wrb_A 168 NKISLEFCKYIVLDEADRMLDMG--FEPQIRKIIEES-NMPSGINRQTLMFSATFPKEIQKLAADFL--YNYIFMT 238 (253)
T ss_dssp TSBCCTTCCEEEEETHHHHHHTT--CHHHHHHHHHSS-CCCCGGGCEEEEEESSCCHHHHHHHHHHC--SSCEEEE
T ss_pred CCCChhhCCEEEEeCHHHHHhCc--hHHHHHHHHhhc-cCCCCCCcEEEEEEEeCCHHHHHHHHHHc--CCCEEEE
Confidence 2345678999999999999988 776655543211 233 57899999999998877555544 4555443
No 84
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=4.8e-27 Score=209.06 Aligned_cols=146 Identities=23% Similarity=0.295 Sum_probs=129.5
Q ss_pred cceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCc
Q 011387 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (487)
Q Consensus 231 ~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (487)
++.+.+........++..|.++++...+.++||||++++.++.+++.|.+.|+.+..+||++++.+|.++++.|.+|+.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 33333333333246777888888877778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEEEEEecchHHHHHHHHHh
Q 011387 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (487)
Q Consensus 311 vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~d~~~~~~i~~~ 376 (487)
|||||+++++|+|+|++++||++++|++...|+||+||+||.|+.|.+++++...|...+..+.+.
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 148 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRY 148 (170)
Confidence 999999999999999999999999999999999999999999999999999999888777666554
No 85
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=6.6e-23 Score=216.56 Aligned_cols=318 Identities=21% Similarity=0.228 Sum_probs=223.5
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH---
Q 011387 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (487)
Q Consensus 27 ~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~---~~~~~lvl~P~~~L~~q~~~~l~~--- 100 (487)
..+.++.+|+ .|+++|..+++.+++|+ ++.|+||+|||++|.+|++. .+..++|++||++|+.|..+.+..
T Consensus 69 REAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~ 145 (997)
T 2ipc_A 69 RESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYR 145 (997)
T ss_dssp HHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 3455667899 89999999999999998 99999999999999999953 467899999999999999888776
Q ss_pred -cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhh-------hhcC---CccEEEEecccc
Q 011387 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-------HSRG---LLNLVAIDEAHC 169 (487)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~-------~~~~---~l~~lViDEah~ 169 (487)
+|+.+..+.++.....+...+. .+|+|+||..+. ++.+.+. ...+ .+.++||||||.
T Consensus 146 ~lGLsv~~i~Gg~~~~~r~~ay~--------~DIvyGTpgrlg----fDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 146 GLGLSVGVIQHASTPAERRKAYL--------ADVTYVTNSELG----FDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp TTTCCEEECCTTCCHHHHHHHHT--------SSEEEEEHHHHH----HHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred hcCCeEEEEeCCCCHHHHHHHcC--------CCEEEECchhhh----hHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 5899988888877654443321 566555544331 1233322 2355 799999999999
Q ss_pred cc-ccCC------------------------------------------CCh-------------------------HHH
Q 011387 170 IS-SWGH------------------------------------------DFR-------------------------PSY 181 (487)
Q Consensus 170 ~~-~~g~------------------------------------------~f~-------------------------~~~ 181 (487)
++ +.+. +|. ..|
T Consensus 214 mLiDeartPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly 293 (997)
T 2ipc_A 214 ILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLF 293 (997)
T ss_dssp HTTSSTTSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHH
T ss_pred HHHhCCCCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCcccc
Confidence 85 2110 110 011
Q ss_pred H----HHH-----HHHHh--C------------------------C----------------------------------
Q 011387 182 R----KLS-----SLRNY--L------------------------P---------------------------------- 192 (487)
Q Consensus 182 ~----~l~-----~l~~~--~------------------------~---------------------------------- 192 (487)
. .+. .++.+ | +
T Consensus 294 ~~~n~~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~Qn 373 (997)
T 2ipc_A 294 SPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQN 373 (997)
T ss_dssp TTTCHHHHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHH
Confidence 0 000 00000 0 0
Q ss_pred ----CCcEEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEE---EeeCchhhHHHHHHHHHHhC--CCceEEE
Q 011387 193 ----DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN--GDTCAIV 263 (487)
Q Consensus 193 ----~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~l~~~l~~~--~~~~~iI 263 (487)
-..+.+||+|+..+. ..+.+..++. ++..+.++|.++... .+. ....++..+.+.+... .+.|+||
T Consensus 374 yFr~Y~kLsGMTGTA~tE~-~Ef~~iY~l~---Vv~IPTn~p~~R~D~~d~vy~-t~~~K~~AIv~eI~~~~~~GqPVLV 448 (997)
T 2ipc_A 374 FFRLYEKRAGMTGTAKTEE-KEFQEIYGMD---VVVVPTNRPVIRKDFPDVVYR-TEKGKFYAVVEEIAEKYERGQPVLV 448 (997)
T ss_dssp HHTTSSEEEEEESSCGGGH-HHHHHHHCCC---EEECCCSSCCCCEEEEEEEES-SHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHhChHheecCCCchHHH-HHHHHHhCCC---EEEcCCCCCcccccCCCeEEc-CHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 013789999997653 4555555554 455667788776543 232 2356777777666543 6789999
Q ss_pred EecccchHHHHHHHHH----------------------------------------------------------------
Q 011387 264 YCLERTTCDELSAYLS---------------------------------------------------------------- 279 (487)
Q Consensus 264 f~~s~~~~~~l~~~L~---------------------------------------------------------------- 279 (487)
+|.|.+.++.+++.|.
T Consensus 449 gT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 528 (997)
T 2ipc_A 449 GTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWE 528 (997)
T ss_dssp ECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhcccccccccccccccccccccccccccc
Confidence 9999999999999998
Q ss_pred ------------hCCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEEEcCccccccccCCC-------------------
Q 011387 280 ------------AGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRKDV------------------- 327 (487)
Q Consensus 280 ------------~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~vLVaT~~~~~GiDip~v------------------- 327 (487)
+.|++.-.+++.....+- ++.. ..| ...|-|||+++|||-||.=-
T Consensus 529 ~~~~~~~~~~~~~~gI~H~VLNAK~he~EA-eIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~ 605 (997)
T 2ipc_A 529 GLKRAVHTLAVLRQGIPHQVLNAKHHAREA-EIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRY 605 (997)
T ss_dssp HHHHHHHHHHHHHHCCCCCEECSSSHHHHH-HHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTT
T ss_pred ccchhhhhhHHHHcCCCeeeccccchHHHH-HHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccc
Confidence 456666666666443332 2222 123 35799999999999997632
Q ss_pred c-------------------------------------------------------EEEEeCCCCCHHHHHHHHhccCCC
Q 011387 328 R-------------------------------------------------------LVCHFNIPKSMEAFYQESGRAGRD 352 (487)
Q Consensus 328 ~-------------------------------------------------------~VI~~~~p~s~~~y~Qr~GRagR~ 352 (487)
. +||-...+.|..---|..||+||.
T Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQ 685 (997)
T 2ipc_A 606 EWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQ 685 (997)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCS
T ss_pred ccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccC
Confidence 1 899999999999999999999999
Q ss_pred CCCceEEEEEecchH
Q 011387 353 QLPSKSLLYYGMDDR 367 (487)
Q Consensus 353 g~~g~~i~~~~~~d~ 367 (487)
|.||.+..|++-+|.
T Consensus 686 GDPGsSrF~LSLeDd 700 (997)
T 2ipc_A 686 GDPGGSRFYVSFDDD 700 (997)
T ss_dssp SCCCEEEEEEESSSH
T ss_pred CCCCCeEEEEECChH
Confidence 999999999988764
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=4.5e-22 Score=208.61 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=62.7
Q ss_pred cCCCCCcHHHHHHHHH----HHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEec
Q 011387 34 FGHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (487)
Q Consensus 34 fg~~~~~~~Q~~~i~~----~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~ 109 (487)
.|+ .+||+|.+++.. +..|+++++.||||+|||++|++|++..+++++|++||++|+.|+.+.+..++++...+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~ 82 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLI 82 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEec
Confidence 577 799999998754 457899999999999999999999999999999999999999999999988877766654
Q ss_pred C
Q 011387 110 S 110 (487)
Q Consensus 110 ~ 110 (487)
+
T Consensus 83 g 83 (540)
T 2vl7_A 83 G 83 (540)
T ss_dssp -
T ss_pred C
Confidence 3
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.83 E-value=6.4e-19 Score=185.32 Aligned_cols=315 Identities=14% Similarity=0.103 Sum_probs=195.4
Q ss_pred CCCCCcHHHHHHHHH----HHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHc----CCceE
Q 011387 35 GHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK----GIAGE 106 (487)
Q Consensus 35 g~~~~~~~Q~~~i~~----~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~----~~~~~ 106 (487)
|+ ++||+|.+++.+ +..|+++++.||||+|||++|++|++..+.+++|++||++|+.|..+++..+ +++..
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 44 599999997765 4578999999999999999999999999999999999999999999988876 56666
Q ss_pred EecCCCCH---------------------------------HHHHHHH------------HHHhcCCCcccEEEeCcccc
Q 011387 107 FLSSTQTM---------------------------------QVKTKIY------------EDLDSGKPSLRLLYVTPELT 141 (487)
Q Consensus 107 ~~~~~~~~---------------------------------~~~~~~~------------~~~~~~~~~~~il~~tpe~v 141 (487)
.+.+.... ....... ...+......+++++|+..+
T Consensus 80 ~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l 159 (551)
T 3crv_A 80 FLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYF 159 (551)
T ss_dssp ECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHH
T ss_pred EEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHh
Confidence 55432110 0000000 00011112367877777766
Q ss_pred cChhhHHHHHhhhh-cCCccEEEEeccccccccCCC--------------------------------------------
Q 011387 142 ATPGFMSKLKKIHS-RGLLNLVAIDEAHCISSWGHD-------------------------------------------- 176 (487)
Q Consensus 142 ~t~~~~~~l~~~~~-~~~l~~lViDEah~~~~~g~~-------------------------------------------- 176 (487)
..+.. ..... .....++||||||.+.+ ..+
T Consensus 160 ~~~~~----~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~ 234 (551)
T 3crv_A 160 FIDRY----REFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKY 234 (551)
T ss_dssp HCHHH----HTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSC
T ss_pred cCHHH----HHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 65531 11111 12457899999999865 210
Q ss_pred ---------ChHHHH-------------------------HHHHHHH----------------------------hCCC-
Q 011387 177 ---------FRPSYR-------------------------KLSSLRN----------------------------YLPD- 193 (487)
Q Consensus 177 ---------f~~~~~-------------------------~l~~l~~----------------------------~~~~- 193 (487)
+..... .+..+.. .+.+
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~ 314 (551)
T 3crv_A 235 IKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDN 314 (551)
T ss_dssp EECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCT
T ss_pred cccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhcc
Confidence 000000 0000000 1122
Q ss_pred -CcEEEEecCCChHHHHHHHHHhcCCCCeE-------EecCCCCCcceEEEEee-C--ch---hhHHHHHHH----HHHh
Q 011387 194 -VPILALTATAAPKVQKDVMESLCLQNPLV-------LKSSFNRPNLFYEVRYK-D--LL---DDAYADLCS----VLKA 255 (487)
Q Consensus 194 -~~~i~lSAT~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~~~~~~v~~~-~--~~---~~~~~~l~~----~l~~ 255 (487)
..+|++|||+.+ ...+...+++..+.. +.+.+ ..+...-+... . .. ......+.+ +++.
T Consensus 315 ~~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~ 391 (551)
T 3crv_A 315 ELSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ 391 (551)
T ss_dssp TCEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh
Confidence 578999999987 466778888863332 12334 34433322211 0 00 122333333 3333
Q ss_pred CCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEc--CccccccccC-----CCc
Q 011387 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT--VAFGMGIDRK-----DVR 328 (487)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT--~~~~~GiDip-----~v~ 328 (487)
.++.++||++|....+.+++ ..+..+..-..+++. .+.++.|+.+...||+|| ..+++|||+| ..+
T Consensus 392 -~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~ 464 (551)
T 3crv_A 392 -AKANVLVVFPSYEIMDRVMS---RISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLIS 464 (551)
T ss_dssp -CSSEEEEEESCHHHHHHHHT---TCCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEE
T ss_pred -CCCCEEEEecCHHHHHHHHH---hcCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCccee
Confidence 34579999999999999987 344444443345553 456777754445899998 5999999999 378
Q ss_pred EEEEeCCCC---------------------CH-H--------HHHHHHhccCCCCCCceEEEEEecc
Q 011387 329 LVCHFNIPK---------------------SM-E--------AFYQESGRAGRDQLPSKSLLYYGMD 365 (487)
Q Consensus 329 ~VI~~~~p~---------------------s~-~--------~y~Qr~GRagR~g~~g~~i~~~~~~ 365 (487)
.||..++|- .. . ...|-+||+=|....--++++++..
T Consensus 465 ~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 465 DVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp EEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 999999873 11 1 1248999999986554455555544
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.78 E-value=3.4e-19 Score=164.18 Aligned_cols=156 Identities=22% Similarity=0.245 Sum_probs=96.9
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC---------CCeEEEeCcHHHHHHH-HHHHHHHc--
Q 011387 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVVSPLIALMEN-QVIGLKEK-- 101 (487)
Q Consensus 34 fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~---------~~~~lvl~P~~~L~~q-~~~~l~~~-- 101 (487)
.+...|+++|.++++.+++++++++.+|||+|||++++++++.. +++++|++|+++|+.| +.+.+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 34457999999999999999999999999999999999888742 6789999999999999 55566654
Q ss_pred -CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhh--------hhcCCccEEEEeccccccc
Q 011387 102 -GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--------HSRGLLNLVAIDEAHCISS 172 (487)
Q Consensus 102 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~--------~~~~~l~~lViDEah~~~~ 172 (487)
++....+.++........ .... ..+++++||+.+ ..+... .....++++||||||++..
T Consensus 109 ~~~~v~~~~g~~~~~~~~~---~~~~---~~~i~v~T~~~l------~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKISFP---EVVK---SCDIIISTAQIL------ENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp TTSCEEECCC---CCCCHH---HHHH---HCSEEEEEHHHH------HHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred cCceEEEEeCCcccchhHH---hhcc---CCCEEEECHHHH------HHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 455555554432211100 0111 155665555543 332221 3356689999999999975
Q ss_pred cCCCChHHHHHHHHHH--Hh---------CCCCcEEEEecC
Q 011387 173 WGHDFRPSYRKLSSLR--NY---------LPDVPILALTAT 202 (487)
Q Consensus 173 ~g~~f~~~~~~l~~l~--~~---------~~~~~~i~lSAT 202 (487)
.+. ++..+..+.... .. .++.++++||||
T Consensus 177 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 177 EAV-YNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp --C-HHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred CCc-HHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 432 333222211111 00 167889999998
No 89
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.77 E-value=1.1e-18 Score=166.28 Aligned_cols=123 Identities=11% Similarity=0.120 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHhC--CCceEEEEecccchHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcC-CCc-EEEEcCc
Q 011387 243 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVA 317 (487)
Q Consensus 243 ~~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~-vLVaT~~ 317 (487)
..|+..|.++++.. .+.++||||+++..++.+.+.|.+. |+.+..+||+++.++|.++++.|.+| ..+ +|++|++
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 46777788877765 6789999999999999999999885 99999999999999999999999998 677 7999999
Q ss_pred cccccccCCCcEEEEeCCCCCHHHHHHHHhccCCCCCCceEE--EEEecc
Q 011387 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL--LYYGMD 365 (487)
Q Consensus 318 ~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i--~~~~~~ 365 (487)
+++|+|++++++||+||+|+++..|.|++||++|.|+.+.+. .++...
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 999999999999999999999999999999999999877654 345544
No 90
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.76 E-value=3.8e-18 Score=159.69 Aligned_cols=139 Identities=22% Similarity=0.136 Sum_probs=107.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc-eEEecCCCCHHH
Q 011387 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~-~~~~~~~~~~~~ 116 (487)
.++++|.++++.+++++++++++|||+|||.+++.++...+.+++|++|+++|+.|+.+++.++++. ...+.+....
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~-- 170 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBC--
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC--
Confidence 6899999999999999999999999999999999888888899999999999999999999998887 6666655421
Q ss_pred HHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcE
Q 011387 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (487)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~ 196 (487)
..+++++|++.+ ....... ...++++||||||++...+ | ..+...++..++
T Consensus 171 -------------~~~i~v~T~~~l------~~~~~~~-~~~~~llIiDEaH~l~~~~--~-------~~i~~~~~~~~~ 221 (237)
T 2fz4_A 171 -------------LKPLTVSTYDSA------YVNAEKL-GNRFMLLIFDEVHHLPAES--Y-------VQIAQMSIAPFR 221 (237)
T ss_dssp -------------CCSEEEEEHHHH------HHTHHHH-TTTCSEEEEECSSCCCTTT--H-------HHHHHTCCCSEE
T ss_pred -------------cCCEEEEeHHHH------HhhHHHh-cccCCEEEEECCccCCChH--H-------HHHHHhccCCEE
Confidence 245655555433 2222211 2458999999999997643 2 235566678889
Q ss_pred EEEecCCChHH
Q 011387 197 LALTATAAPKV 207 (487)
Q Consensus 197 i~lSAT~~~~~ 207 (487)
++||||+.+..
T Consensus 222 l~LSATp~r~D 232 (237)
T 2fz4_A 222 LGLTATFERED 232 (237)
T ss_dssp EEEEESCC---
T ss_pred EEEecCCCCCC
Confidence 99999998654
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.74 E-value=5.4e-18 Score=163.17 Aligned_cols=145 Identities=17% Similarity=0.109 Sum_probs=106.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCC----ceEEec
Q 011387 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGI----AGEFLS 109 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~----~~~~~lvl~P~~~L~~q~~~~l~~~~~----~~~~~~ 109 (487)
+++++|.++++.++++++.++.+|||+|||++++.++.. ..++++|++|+++|+.|+.+++++++. ....+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 799999999999998888999999999999999877664 245999999999999999999998753 233333
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHH
Q 011387 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (487)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~ 189 (487)
++..... ......+++++||+.+..... .....++++|+||||++.. ..+..+..
T Consensus 193 ~~~~~~~---------~~~~~~~I~v~T~~~l~~~~~-------~~~~~~~~vIiDEaH~~~~---------~~~~~il~ 247 (282)
T 1rif_A 193 GGASKDD---------KYKNDAPVVVGTWQTVVKQPK-------EWFSQFGMMMNDECHLATG---------KSISSIIS 247 (282)
T ss_dssp TTCSSTT---------CCCTTCSEEEECHHHHTTSCG-------GGGGGEEEEEEETGGGCCH---------HHHHHHTT
T ss_pred CCCcchh---------hhccCCcEEEEchHHHHhhHH-------HHHhhCCEEEEECCccCCc---------ccHHHHHH
Confidence 3322111 111346787777765543211 1234689999999999864 24445556
Q ss_pred hC-CCCcEEEEecCCChHH
Q 011387 190 YL-PDVPILALTATAAPKV 207 (487)
Q Consensus 190 ~~-~~~~~i~lSAT~~~~~ 207 (487)
.+ +..+++++|||+++..
T Consensus 248 ~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 248 GLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TCTTCCEEEEECSSCCTTS
T ss_pred HhhcCCeEEEEeCCCCCcc
Confidence 65 4788999999997653
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.73 E-value=1e-16 Score=170.07 Aligned_cols=163 Identities=14% Similarity=0.114 Sum_probs=101.9
Q ss_pred cEEEEecCCChHHHHHHHHHhcCCCCeEE--ecCCCCCcceEEEEeeC------chhhHHHH----HHHHHHhCCCceEE
Q 011387 195 PILALTATAAPKVQKDVMESLCLQNPLVL--KSSFNRPNLFYEVRYKD------LLDDAYAD----LCSVLKANGDTCAI 262 (487)
Q Consensus 195 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~~~~v~~~~------~~~~~~~~----l~~~l~~~~~~~~i 262 (487)
.+|++|||+.+ ...+...+++. ...+ .+.++..+...-+.... ........ +.++++..+ +.++
T Consensus 377 ~~il~SaTL~p--~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~-g~~l 452 (620)
T 4a15_A 377 KTIHMSGTLDP--FDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVK-KNTI 452 (620)
T ss_dssp EEEEEESSCCS--HHHHHHHHCCC-CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHC-SCEE
T ss_pred eEEEEccCCCc--HHHHHHHhCCC-ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 35899999997 56677888886 3333 34455555443322110 01112223 344444444 4589
Q ss_pred EEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC--ccccccccCC--CcEEEEeCCCC-
Q 011387 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRKD--VRLVCHFNIPK- 337 (487)
Q Consensus 263 If~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~--~~~~GiDip~--v~~VI~~~~p~- 337 (487)
||++|....+.+++.|+. .... ..-+++..+|.++++.|. ++..||++|. .+++|||+|+ .+.||..++|-
T Consensus 453 vlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp 528 (620)
T 4a15_A 453 VYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFP 528 (620)
T ss_dssp EEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCC
T ss_pred EEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCC
Confidence 999999999999988862 2222 455666778999999999 8889999985 8999999996 78899999883
Q ss_pred ------------------CH----------HHHHHHHhccCCCCCCceEEEEEecc
Q 011387 338 ------------------SM----------EAFYQESGRAGRDQLPSKSLLYYGMD 365 (487)
Q Consensus 338 ------------------s~----------~~y~Qr~GRagR~g~~g~~i~~~~~~ 365 (487)
+. ....|-+||+-|....--++++++..
T Consensus 529 ~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 529 RPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp CCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred CCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 11 11269999999976554455555443
No 93
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.67 E-value=4.9e-16 Score=145.26 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=102.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcC--------CCeEEEeCcHHHHHHHHHHHHHHc-CCc----
Q 011387 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK-GIA---- 104 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~--------~~~~lvl~P~~~L~~q~~~~l~~~-~~~---- 104 (487)
.++++|.++++.+.+|+++++.||||||||.++.++++.. ...++++.|+++|+.|..+.+... +..
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 4788999999999999999999999999999887776532 338999999999999998888753 211
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccc-cccCCCChHHHHH
Q 011387 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI-SSWGHDFRPSYRK 183 (487)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~-~~~g~~f~~~~~~ 183 (487)
...... ..........++ +++||+.+..+... ...+++++|+||||.. .+.+ |. ...
T Consensus 141 ~g~~~~-----------~~~~~~~~~~~I------vv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~--~~--~~~ 198 (235)
T 3llm_A 141 CGYSVR-----------FESILPRPHASI------MFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTD--FL--LVV 198 (235)
T ss_dssp EEEEET-----------TEEECCCSSSEE------EEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHH--HH--HHH
T ss_pred EEEeec-----------hhhccCCCCCeE------EEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchH--HH--HHH
Confidence 111000 000001122445 45556655444332 4678999999999985 3322 11 135
Q ss_pred HHHHHHhCCCCcEEEEecCCChHH
Q 011387 184 LSSLRNYLPDVPILALTATAAPKV 207 (487)
Q Consensus 184 l~~l~~~~~~~~~i~lSAT~~~~~ 207 (487)
+..+....++.++++||||++.+.
T Consensus 199 l~~i~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 199 LRDVVQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHCTTSEEEEEECSSCCHH
T ss_pred HHHHHhhCCCCeEEEEecCCCHHH
Confidence 666777788999999999999776
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.53 E-value=4.7e-07 Score=95.80 Aligned_cols=78 Identities=18% Similarity=0.091 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhh--HHHHHhHhc-----CCCeEEEeCcHHHHHHHHH
Q 011387 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS--MCYQIPALA-----KPGIVLVVSPLIALMENQV 95 (487)
Q Consensus 23 ~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKT--l~~~lp~l~-----~~~~~lvl~P~~~L~~q~~ 95 (487)
...+...|.+.|+-..-.+.|+++++.++.++.+++.|++|+||| +.++++.+. .+.++++++||..++.+..
T Consensus 134 ~~~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~ 213 (608)
T 1w36_D 134 EALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 (608)
T ss_dssp HHHHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHH
Confidence 445666777665433336899999999999999999999999999 667777775 2458999999999998876
Q ss_pred HHHHH
Q 011387 96 IGLKE 100 (487)
Q Consensus 96 ~~l~~ 100 (487)
+.+..
T Consensus 214 e~~~~ 218 (608)
T 1w36_D 214 ESLGK 218 (608)
T ss_dssp HHHTH
T ss_pred HHHHH
Confidence 66543
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.05 E-value=1.5e-05 Score=85.11 Aligned_cols=72 Identities=22% Similarity=0.162 Sum_probs=57.5
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEcCCCchhhHHHH---HhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEe
Q 011387 37 AQFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~~d-vlv~apTGsGKTl~~~---lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~ 108 (487)
..+.+-|.+|+..++..++ .+|.||+|+|||.+.. .-.+..+.++++++||..-+.+..++|...+.+..-+
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRl 263 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRL 263 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEe
Confidence 3588999999999988776 5789999999996532 2234568899999999999999999998876655443
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.89 E-value=0.00011 Score=77.92 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=56.6
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH--HhHhc--CCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 011387 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (487)
Q Consensus 36 ~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~--lp~l~--~~~~~lvl~P~~~L~~q~~~~l~~~~~~~ 105 (487)
...+++.|.+++..++.+.-+++.||+|+|||.+.. +..+. .+.++++++|+...+.+..+.+.+.|+..
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~ 251 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV 251 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCE
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeE
Confidence 346889999999999887788999999999996532 22332 46789999999999999999988776554
No 97
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.73 E-value=0.00019 Score=77.88 Aligned_cols=69 Identities=23% Similarity=0.316 Sum_probs=56.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH--HhHhc--CCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 011387 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~--lp~l~--~~~~~lvl~P~~~L~~q~~~~l~~~~~~~ 105 (487)
..+++.|.+++..++.+.-.++.||+|+|||.+.. +..+. .+.++++++|+...+.+..+.+...|+..
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~v 427 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV 427 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCE
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcce
Confidence 45789999999999888778999999999996532 33333 46789999999999999999988776654
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00025 Score=77.09 Aligned_cols=69 Identities=23% Similarity=0.326 Sum_probs=56.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH--HhHhc--CCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 011387 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~--lp~l~--~~~~~lvl~P~~~L~~q~~~~l~~~~~~~ 105 (487)
..+++.|.+|+..++.+.-++|.||+|+|||.+.. +..+. .+.++++++|+...+.+..+++.+.++..
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~i 431 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKV 431 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccE
Confidence 46789999999999887778999999999996532 22222 47899999999999999999998876544
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.59 E-value=0.00018 Score=73.43 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=47.4
Q ss_pred cCCCCCcHHHHHHHHHHHcC----C-CEEEEcCCCchhhHHHH--HhHhc-CCC-eEEEeCcHHHHHHHHHHHH
Q 011387 34 FGHAQFRDKQLDAIQAVLSG----R-DCFCLMPTGGGKSMCYQ--IPALA-KPG-IVLVVSPLIALMENQVIGL 98 (487)
Q Consensus 34 fg~~~~~~~Q~~~i~~~l~~----~-dvlv~apTGsGKTl~~~--lp~l~-~~~-~~lvl~P~~~L~~q~~~~l 98 (487)
..++.+++.|++++..++.. + .+++.|+.|+|||.+.. +..+. .+. .+++++||...+....+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 57789999999999877532 3 88999999999996542 22232 343 6999999988776544433
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.55 E-value=0.00032 Score=73.39 Aligned_cols=59 Identities=14% Similarity=0.001 Sum_probs=46.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH--HhHh-cCCCeEEEeCcHHHHHHHHHH
Q 011387 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-AKPGIVLVVSPLIALMENQVI 96 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~--lp~l-~~~~~~lvl~P~~~L~~q~~~ 96 (487)
.+++.|++++..++.++.+++.+|.|+|||.... +-.+ ..+.++++++||...+....+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHh
Confidence 4789999999999999999999999999996532 2222 347789999999888776444
No 101
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.13 E-value=0.0016 Score=62.23 Aligned_cols=122 Identities=11% Similarity=0.024 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHh--CCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccc
Q 011387 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (487)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~G 321 (487)
.|+..|..++.. ..+.+++||++..+..+-+..+|...|+....+.|.....+ .+ -.+....+.+.|.+.+-|
T Consensus 109 GKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsag~~g 183 (328)
T 3hgt_A 109 GKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSEGINF 183 (328)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCT
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECCCCCC
Confidence 455544444432 25779999999999999999999999999999999854432 11 124555666668877778
Q ss_pred cc-----cCCCcEEEEeCCCCCHHHH-HHHHhccCCCC----CCceEEEEEecchHHHH
Q 011387 322 ID-----RKDVRLVCHFNIPKSMEAF-YQESGRAGRDQ----LPSKSLLYYGMDDRRRM 370 (487)
Q Consensus 322 iD-----ip~v~~VI~~~~p~s~~~y-~Qr~GRagR~g----~~g~~i~~~~~~d~~~~ 370 (487)
+| ....+.||.||..+++..= +|.+-|+.|.| ++-.++-++...-.+..
T Consensus 184 in~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~ 242 (328)
T 3hgt_A 184 TKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHC 242 (328)
T ss_dssp TTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHH
T ss_pred cCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHH
Confidence 86 6789999999999988874 99888888863 33445666666655543
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.02 E-value=0.076 Score=56.22 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=49.4
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHH--h-HhcC----CCeEEEeCcHHHHHHHHHHHHHHc
Q 011387 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI--P-ALAK----PGIVLVVSPLIALMENQVIGLKEK 101 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~l--p-~l~~----~~~~lvl~P~~~L~~q~~~~l~~~ 101 (487)
..+++-|++++.. .+..++|.|+.|||||.+..- . .+.. ...++++++|+..+.+..+++.+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 4699999999973 357899999999999976432 2 2222 358999999999999998888763
No 103
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.43 E-value=0.0052 Score=61.42 Aligned_cols=43 Identities=14% Similarity=-0.057 Sum_probs=32.8
Q ss_pred EEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHH
Q 011387 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 56 vlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
.++.|+.|+|||....- .+ .....+|++|+++++.++.+.+.+
T Consensus 164 ~~I~G~aGsGKTt~I~~-~~-~~~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILS-RV-NFEEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEECTTSCHHHHHHH-HC-CTTTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHH-Hh-ccCCeEEEeCCHHHHHHHHHHhhh
Confidence 57899999999986432 22 235679999999999987777644
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.36 E-value=0.035 Score=48.22 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=21.6
Q ss_pred HHHHHHHHHHH---------cCCCEEEEcCCCchhhHHH
Q 011387 41 DKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 41 ~~Q~~~i~~~l---------~~~dvlv~apTGsGKTl~~ 70 (487)
+.|++++..+. .|+.+++.+|+|+|||...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 35555554443 3678999999999999754
No 105
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.099 Score=50.00 Aligned_cols=18 Identities=6% Similarity=-0.084 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
+.++++.||+|+|||.+.
T Consensus 45 ~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCEEEEECCCSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 367999999999999864
No 106
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.95 E-value=0.035 Score=54.62 Aligned_cols=63 Identities=22% Similarity=0.177 Sum_probs=48.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhH----hc-CCCeEEEeCcHHHHHHHHHHHHHH
Q 011387 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LA-KPGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~----l~-~~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
.+.|+|+..+..+...+-+++..+-+.|||.+....+ +. .+..+++++|+...+...++.++.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 6899999999887655668899999999997654322 22 356899999999988877766654
No 107
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.85 E-value=0.055 Score=53.08 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
+.+++.+|+|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46899999999999764
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.75 E-value=0.0045 Score=56.20 Aligned_cols=36 Identities=25% Similarity=0.070 Sum_probs=24.1
Q ss_pred CCCEEEEcCCCchhhHHHHHh---HhcCCCeEEEeCcHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLI 88 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~ 88 (487)
|.=+++.+|+|+|||...+-- +..++.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 445678899999999764322 223466788877653
No 109
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.54 E-value=0.042 Score=52.82 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=31.0
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHH-----HcCCCEEEEcCCCchhhHHHH
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV-----LSGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~-----l~~~dvlv~apTGsGKTl~~~ 71 (487)
+...|.++.-.++..+.|++...+ |.. .+.+ ...+.+++.+|+|+|||....
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~----~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVIL----PVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHH----HHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHH----HHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 344566667777777777764211 000 0011 113579999999999998654
No 110
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.46 E-value=0.17 Score=44.73 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 36999999999999753
No 111
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.37 E-value=0.045 Score=46.18 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.++.+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5788999999999999643
No 112
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.27 E-value=0.026 Score=55.90 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=20.6
Q ss_pred CCCEEEEcCCCchhhHHHHHhHhcCCCeEEE
Q 011387 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~lp~l~~~~~~lv 83 (487)
.+.+++.+|+|+|||.....-+-..+...+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence 3689999999999998764333333333333
No 113
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.23 E-value=0.26 Score=46.61 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
.++++.+|+|+|||...
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999765
No 114
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.10 E-value=0.029 Score=49.54 Aligned_cols=131 Identities=18% Similarity=0.158 Sum_probs=64.9
Q ss_pred CCEEEEcCCCchhhHHHH---HhHhcCCCeEEEeCcHHH-HHHHHHHHHHHcCCceEEecCCCC--HHHHHHHHHHHhcC
Q 011387 54 RDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIA-LMENQVIGLKEKGIAGEFLSSTQT--MQVKTKIYEDLDSG 127 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~---lp~l~~~~~~lvl~P~~~-L~~q~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 127 (487)
-.+++..++|.|||.+++ +-++.++.+++++.-.+. .-..-.+.+..+++.......+.. .......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~------- 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREAD------- 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHH-------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHH-------
Confidence 478899999999998875 344556888888853331 000001112222222111111000 0000000
Q ss_pred CCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChH
Q 011387 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (487)
Q Consensus 128 ~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (487)
...-...+....+....+.+++||+||.-....+|. -+. ..+..+....|...-+.+|+-..+.
T Consensus 102 ------------~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~--l~~-~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 102 ------------TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDY--LPL-EEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp ------------HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTS--SCH-HHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred ------------HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCC--CCH-HHHHHHHHhCcCCCEEEEECCCCcH
Confidence 000012233444555567799999999987766663 222 2334444555555556666655443
No 115
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.04 E-value=0.12 Score=43.11 Aligned_cols=20 Identities=10% Similarity=-0.064 Sum_probs=17.0
Q ss_pred HcCCCEEEEcCCCchhhHHH
Q 011387 51 LSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 51 l~~~dvlv~apTGsGKTl~~ 70 (487)
..+.++++.+|+|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 35678999999999999764
No 116
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.99 E-value=0.054 Score=58.48 Aligned_cols=77 Identities=12% Similarity=-0.000 Sum_probs=65.7
Q ss_pred CCceEEEEecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-cccccccCCCcEEE
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~-~~~GiDip~v~~VI 331 (487)
.+.+++|.++|+.-+.+.++.+.+ .|+.+..+||+++..+|....+.+.+|+.+|+|+|.. +...++..++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 356899999999999888887765 3789999999999999999999999999999999976 44567788888888
Q ss_pred Ee
Q 011387 332 HF 333 (487)
Q Consensus 332 ~~ 333 (487)
.-
T Consensus 496 ID 497 (780)
T 1gm5_A 496 ID 497 (780)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 117
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.94 E-value=0.11 Score=50.01 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
+.+++.+|+|+|||....
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 679999999999998653
No 118
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.92 E-value=0.16 Score=48.23 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=30.4
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCCcHHH-HHHHHH--HHcCCCEEEEcCCCchhhHHHHH
Q 011387 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQ-LDAIQA--VLSGRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q-~~~i~~--~l~~~dvlv~apTGsGKTl~~~l 72 (487)
..|.++.-.++..+.|++...+ |.. .+.+.. +..++.+++.+|+|+|||.....
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~----~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQY----PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHH----HHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHH----HhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHH
Confidence 4455566666666666653211 100 011111 12356799999999999987543
No 119
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.90 E-value=0.21 Score=48.85 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=14.2
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999764
No 120
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.88 E-value=0.051 Score=55.01 Aligned_cols=41 Identities=15% Similarity=-0.003 Sum_probs=25.5
Q ss_pred HHHHHHc----CCCEEEEcCCCchhhHHHHHhH---hc-CCCeEEEeCc
Q 011387 46 AIQAVLS----GRDCFCLMPTGGGKSMCYQIPA---LA-KPGIVLVVSP 86 (487)
Q Consensus 46 ~i~~~l~----~~dvlv~apTGsGKTl~~~lp~---l~-~~~~~lvl~P 86 (487)
.++.++. |.-+++.|++|+|||...+--+ .. .+..+++++.
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 4555553 3457788999999996543221 12 3557888773
No 121
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.87 E-value=0.13 Score=49.64 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=24.1
Q ss_pred CcHHHHHHHHHHH----cCC---CEEEEcCCCchhhHHHH
Q 011387 39 FRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 39 ~~~~Q~~~i~~~l----~~~---dvlv~apTGsGKTl~~~ 71 (487)
+.|+|.+++..+. +|+ .+++.||.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4678888776553 343 38999999999997653
No 122
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.86 E-value=0.051 Score=50.96 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=32.5
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHH--HcCCCEEEEcCCCchhhHHHH
Q 011387 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~--l~~~dvlv~apTGsGKTl~~~ 71 (487)
...|.++.-.++..+.+.+..... -...+.+... ...+.+++.+|+|+|||....
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELP---LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHH---HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHH---hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 345666666777777777642110 0111222222 234689999999999997653
No 123
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.83 E-value=0.12 Score=49.98 Aligned_cols=149 Identities=20% Similarity=0.163 Sum_probs=71.1
Q ss_pred HHHHHHcC----CCEEEEcCCCchhhHHHHHh---HhcCCCeEEEeCc---HHHHHHHHHHHHHHcCCceE-EecCCCCH
Q 011387 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSP---LIALMENQVIGLKEKGIAGE-FLSSTQTM 114 (487)
Q Consensus 46 ~i~~~l~~----~dvlv~apTGsGKTl~~~lp---~l~~~~~~lvl~P---~~~L~~q~~~~l~~~~~~~~-~~~~~~~~ 114 (487)
.++.++.| .=+++.|++|+|||...+-- +...+..+++++. ...|+........ ++... ...+....
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~--~v~~~~l~~g~Ls~ 112 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLT--SINMHDLESGRLDD 112 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHH--CCCHHHHHHTCCCH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhh--CCCHHHHhcCCCCH
Confidence 44455543 44678889999999654322 2235778888874 3444443322221 11111 01122223
Q ss_pred HHHHHHHH---HHhcCCCcccEEEe-CcccccChh-hHHHHHhhhhcC-CccEEEEeccccccccC------CCChHHHH
Q 011387 115 QVKTKIYE---DLDSGKPSLRLLYV-TPELTATPG-FMSKLKKIHSRG-LLNLVAIDEAHCISSWG------HDFRPSYR 182 (487)
Q Consensus 115 ~~~~~~~~---~~~~~~~~~~il~~-tpe~v~t~~-~~~~l~~~~~~~-~l~~lViDEah~~~~~g------~~f~~~~~ 182 (487)
.+...+.. .+.. ..+.+. +|. .+.. ....+....... .+++||||-.+.+...+ .......+
T Consensus 113 ~e~~~l~~a~~~l~~----~~l~I~d~~~--~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr 186 (338)
T 4a1f_A 113 DQWENLAKCFDHLSQ----KKLFFYDKSY--VRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISR 186 (338)
T ss_dssp HHHHHHHHHHHHHHH----SCEEEECCTT--CCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhc----CCeEEeCCCC--CcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHH
Confidence 22222111 1111 123222 221 1222 222333333333 69999999999885411 11223334
Q ss_pred HHHHHHHhCCCCcEEEEecCC
Q 011387 183 KLSSLRNYLPDVPILALTATA 203 (487)
Q Consensus 183 ~l~~l~~~~~~~~~i~lSAT~ 203 (487)
.|..+.+.+ ++|++++|-..
T Consensus 187 ~LK~lAkel-~vpVi~lsQl~ 206 (338)
T 4a1f_A 187 ELKTLAREL-EIPIIALVQLN 206 (338)
T ss_dssp HHHHHHHHH-TSCEEEEEECC
T ss_pred HHHHHHHHc-CCeEEEEEecC
Confidence 444444443 78888887654
No 124
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.76 E-value=0.066 Score=51.35 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
+..+++.||+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 368999999999999764
No 125
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.75 E-value=0.092 Score=52.89 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.7
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
+.+++.+|+|+|||....
T Consensus 168 ~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 679999999999998654
No 126
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.67 E-value=0.088 Score=49.06 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
+.+++.+|+|+|||....
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 478999999999998653
No 127
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.66 E-value=0.084 Score=55.49 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=40.9
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHH
Q 011387 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~--~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~ 92 (487)
.++.-|.+++..++.- ...++.|+-|.|||.+.-+.+-.....++|.+|+.+-+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~ 231 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTD 231 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHH
Confidence 6788999999988863 346889999999997655444333455789999876544
No 128
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.65 E-value=0.083 Score=51.52 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
+.+++.+|+|+|||....
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 579999999999998654
No 129
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.63 E-value=0.18 Score=49.26 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
+..+++.||+|+|||...
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999764
No 130
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.47 E-value=0.19 Score=47.29 Aligned_cols=19 Identities=21% Similarity=0.481 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
++.+++.||+|+|||....
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5789999999999998653
No 131
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.43 E-value=0.11 Score=49.51 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=14.0
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
++++.||+|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 5999999999999754
No 132
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.41 E-value=0.064 Score=54.10 Aligned_cols=153 Identities=16% Similarity=0.106 Sum_probs=68.4
Q ss_pred HHHHHHcC----CCEEEEcCCCchhhHHHH-Hh--Hhc-CCCeEEEeCc---HHHHHHHHHHHHHHcCCceEEe-cCCCC
Q 011387 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQ-IP--ALA-KPGIVLVVSP---LIALMENQVIGLKEKGIAGEFL-SSTQT 113 (487)
Q Consensus 46 ~i~~~l~~----~dvlv~apTGsGKTl~~~-lp--~l~-~~~~~lvl~P---~~~L~~q~~~~l~~~~~~~~~~-~~~~~ 113 (487)
.++.++.| .-+++.|++|+|||...+ +. +.. .+..+++++. ...++...... ..++....+ .+...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~--~~~i~~~~l~~g~l~ 266 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCS--EARIDMNRVRLGQLT 266 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHH--HTTCCTTTCCGGGCC
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHH--HcCCCHHHHhCCCCC
Confidence 34555543 446788899999996443 21 222 3567888764 33343332211 123322111 12223
Q ss_pred HHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEecccccccc--CC--CCh-----HHHHHH
Q 011387 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW--GH--DFR-----PSYRKL 184 (487)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~--g~--~f~-----~~~~~l 184 (487)
............... ...+.+..+.-+........+.+......+++||||..+.+... +. .-+ .....|
T Consensus 267 ~~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~L 345 (444)
T 2q6t_A 267 DRDFSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGL 345 (444)
T ss_dssp HHHHHHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHH
Confidence 332222221111000 02233322111111223333333433446999999999998643 21 111 111223
Q ss_pred HHHHHhCCCCcEEEEecC
Q 011387 185 SSLRNYLPDVPILALTAT 202 (487)
Q Consensus 185 ~~l~~~~~~~~~i~lSAT 202 (487)
..+.+.+ ++++++++-.
T Consensus 346 k~lAke~-~v~vi~lsql 362 (444)
T 2q6t_A 346 KALAREL-GIPIIALSQL 362 (444)
T ss_dssp HHHHHHH-TSCEEEEEEC
T ss_pred HHHHHHh-CCeEEEEecC
Confidence 3333332 7888888754
No 133
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.33 E-value=0.053 Score=48.56 Aligned_cols=36 Identities=17% Similarity=-0.083 Sum_probs=24.2
Q ss_pred CCEEEEcCCCchhhHHHHHhH---hcCCCeEEEeCcHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~---l~~~~~~lvl~P~~~ 89 (487)
+=.++.+|.|+|||...+--+ ...+.+++++.|.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 334688999999997654332 345778888888653
No 134
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.32 E-value=0.08 Score=47.87 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
++.+++.||+|+|||...
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999754
No 135
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.27 E-value=0.14 Score=44.11 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
...+++.+|+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 357899999999999754
No 136
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.23 E-value=0.1 Score=53.68 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=27.6
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCC
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~ 204 (487)
.-.+++|||+|.+..... .....+..+... .+.++++++++..
T Consensus 148 ~~~vliIDEid~l~~~~~---~~l~~L~~~l~~-~~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDR---GGVGQLAQFCRK-TSTPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTST---THHHHHHHHHHH-CSSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhhH---HHHHHHHHHHHh-cCCCEEEEEcCCC
Confidence 456899999999976321 122344444444 4678888888754
No 137
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.12 E-value=0.12 Score=45.27 Aligned_cols=37 Identities=24% Similarity=0.113 Sum_probs=25.4
Q ss_pred cCCCEEEEcCCCchhhHHHHHhH---hcCCCeEEEeCcHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~lp~---l~~~~~~lvl~P~~ 88 (487)
.|+-.++.+|+|+|||...+--+ ...+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 35556889999999998753222 23567788888874
No 138
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.11 E-value=1.1 Score=38.33 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
..+++.+|+|+|||...
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 57999999999999764
No 139
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.07 E-value=0.099 Score=50.06 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=12.2
Q ss_pred CccEEEEecccccc
Q 011387 158 LLNLVAIDEAHCIS 171 (487)
Q Consensus 158 ~l~~lViDEah~~~ 171 (487)
...+++|||+|.+.
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 46789999999986
No 140
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.01 E-value=0.038 Score=58.98 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=48.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHH--h-Hhc----CCCeEEEeCcHHHHHHHHHHHHHH
Q 011387 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI--P-ALA----KPGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~l--p-~l~----~~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
.+++-|++++.. .+..++|.|+.|||||.+..- . .+. ....+++|++|+..+.+..+++..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~ 69 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ 69 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 488999999975 367899999999999976432 1 121 246799999999999999888876
No 141
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.92 E-value=0.03 Score=49.77 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=13.5
Q ss_pred EEEEcCCCchhhHHHH
Q 011387 56 CFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 56 vlv~apTGsGKTl~~~ 71 (487)
.++.|+.|||||....
T Consensus 8 ~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEeCCCCCHHHHHH
Confidence 5899999999998643
No 142
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.89 E-value=0.069 Score=49.26 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
.+.+++.+|+|+|||....
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3678999999999997653
No 143
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.89 E-value=0.058 Score=58.01 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=48.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH--Hh-Hhc----CCCeEEEeCcHHHHHHHHHHHHHH
Q 011387 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IP-ALA----KPGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 37 ~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~--lp-~l~----~~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
..+++-|++++.. .+..++|.|+.|||||.+.. +. .+. ....+++|+.|+..+.+..+++..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4699999999976 35789999999999997643 22 222 235799999999999888888766
No 144
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.86 E-value=0.73 Score=41.07 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=13.8
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
.+++.+|+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999753
No 145
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.86 E-value=0.85 Score=41.18 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=29.4
Q ss_pred cCCCEEEEcCCCchhhHHHH-Hh--HhcCCCeEEEeCcHHHHHHHHHHHHHHcC
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLIALMENQVIGLKEKG 102 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~-lp--~l~~~~~~lvl~P~~~L~~q~~~~l~~~~ 102 (487)
.|.-+++.+|+|+|||.... +. ....+..++++.-... ..+..+.+...|
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g 74 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFG 74 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcC
Confidence 34667899999999997632 22 2334667777764322 234444444443
No 146
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.81 E-value=0.66 Score=44.58 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999764
No 147
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.79 E-value=0.04 Score=48.62 Aligned_cols=36 Identities=22% Similarity=0.073 Sum_probs=24.7
Q ss_pred CCCEEEEcCCCchhhHHHHHhHh---cCCCeEEEeCcHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLI 88 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~lp~l---~~~~~~lvl~P~~ 88 (487)
|+=.++.+|+|+|||...+--+. .++.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 44467899999999976543222 3477888888763
No 148
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.77 E-value=0.12 Score=51.44 Aligned_cols=77 Identities=8% Similarity=0.098 Sum_probs=64.3
Q ss_pred CCCceEEEEecccchHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc----cccccCCCc
Q 011387 256 NGDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKDVR 328 (487)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~----~GiDip~v~ 328 (487)
..+.++||.++++.-+.++++.+++ .|+.+..+||+.+..++....+.+..|+.+|+|+|...- .-++..+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3567899999999999999999988 588999999999999988888999999999999997422 124556788
Q ss_pred EEEE
Q 011387 329 LVCH 332 (487)
Q Consensus 329 ~VI~ 332 (487)
+||.
T Consensus 142 ~iVi 145 (414)
T 3oiy_A 142 FVFV 145 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 149
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.62 E-value=0.082 Score=60.39 Aligned_cols=61 Identities=25% Similarity=0.308 Sum_probs=48.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH---HhHhcC------CCeEEEeCcHHHHHHHHHHHHHH
Q 011387 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ---IPALAK------PGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~---lp~l~~------~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
++++-|.++|..- +++++|.|+.|||||.+.. +-.+.. ...++++++|++.+.+..+++..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 6899999999764 7899999999999998754 222222 24799999999998888777655
No 150
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.61 E-value=1 Score=42.87 Aligned_cols=41 Identities=10% Similarity=-0.039 Sum_probs=26.3
Q ss_pred HHHHHHc----CCCEEEEcCCCchhhHHHH-H--hHhcCCCeEEEeCc
Q 011387 46 AIQAVLS----GRDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSP 86 (487)
Q Consensus 46 ~i~~~l~----~~dvlv~apTGsGKTl~~~-l--p~l~~~~~~lvl~P 86 (487)
.++.++. |.-+++.|++|+|||...+ + -+...+..+++++-
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 4555554 3457889999999995433 2 22334567888873
No 151
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.56 E-value=0.12 Score=52.16 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.7
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (487)
..+++.+|+|+|||.....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 3689999999999987543
No 152
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.45 E-value=0.21 Score=47.59 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
++++++.||+|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999754
No 153
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.43 E-value=0.19 Score=48.95 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=16.9
Q ss_pred CCCEEEEcCCCchhhHHHHHh
Q 011387 53 GRDCFCLMPTGGGKSMCYQIP 73 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~lp 73 (487)
.+.+++.+|+|+|||.....-
T Consensus 117 ~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 367999999999999876433
No 154
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.42 E-value=0.27 Score=47.84 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999764
No 155
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.36 E-value=0.18 Score=47.78 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=14.1
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
++++.||+|+|||...
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999754
No 156
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.26 E-value=0.099 Score=51.56 Aligned_cols=54 Identities=9% Similarity=0.085 Sum_probs=34.3
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHH-HHHHHHHH--cCCCEEEEcCCCchhhHHH
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQ-LDAIQAVL--SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q-~~~i~~~l--~~~dvlv~apTGsGKTl~~ 70 (487)
+...|.+.+-.++..+.|++..- .|.. -+.+..+- -.+.+++.+|+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~----~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIE----LPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTH----HHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH----HHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 44567777777888888876421 1111 11222211 2378999999999999865
No 157
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.10 E-value=0.38 Score=42.26 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
+.+++.+|+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999754
No 158
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.95 E-value=0.16 Score=45.86 Aligned_cols=36 Identities=22% Similarity=0.029 Sum_probs=25.6
Q ss_pred CCCEEEEcCCCchhhHHHHHhH---hcCCCeEEEeCcHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~lp~---l~~~~~~lvl~P~~ 88 (487)
|+=.++.++.|+|||...+--+ ..++.+++++-|.+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC
Confidence 5556789999999997654322 34577888888864
No 159
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.82 E-value=0.21 Score=47.43 Aligned_cols=42 Identities=7% Similarity=0.100 Sum_probs=26.2
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCC
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~ 204 (487)
+..+++||||||.+.. .....|.+.....|..-++++.++.+
T Consensus 81 ~~~kvviIdead~lt~------~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQ------QAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp SSSEEEEETTGGGBCH------HHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred CCceEEEeccHHHhCH------HHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 4578999999999864 22244555566655544555555543
No 160
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.73 E-value=0.17 Score=51.54 Aligned_cols=20 Identities=25% Similarity=0.394 Sum_probs=16.6
Q ss_pred CCEEEEcCCCchhhHHHHHh
Q 011387 54 RDCFCLMPTGGGKSMCYQIP 73 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp 73 (487)
+.+++.+|+|+|||+....-
T Consensus 239 ~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHH
Confidence 57999999999999876433
No 161
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.57 E-value=0.21 Score=47.19 Aligned_cols=18 Identities=22% Similarity=-0.025 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
+.+++.+|+|+|||....
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999998654
No 162
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.53 E-value=0.32 Score=46.72 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
..+++.+|+|+|||....
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 589999999999998653
No 163
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.45 E-value=0.34 Score=48.65 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
..+++.||+|+|||....
T Consensus 131 ~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CCEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999997653
No 164
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.37 E-value=1.4 Score=44.23 Aligned_cols=41 Identities=12% Similarity=0.021 Sum_probs=26.4
Q ss_pred HHHHHHcC----CCEEEEcCCCchhhHHHHH---hHhcCCCeEEEeCc
Q 011387 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSP 86 (487)
Q Consensus 46 ~i~~~l~~----~dvlv~apTGsGKTl~~~l---p~l~~~~~~lvl~P 86 (487)
.++.++.| .-+++.|++|+|||...+- -+...+..+++++-
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 34555543 4567888999999965432 22234678888874
No 165
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.34 E-value=0.23 Score=44.36 Aligned_cols=37 Identities=22% Similarity=0.025 Sum_probs=23.5
Q ss_pred CCCEEEEcCCCchhhHHHHHhH---hcCCCeEEEeCcHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~lp~---l~~~~~~lvl~P~~~ 89 (487)
|.=.++.+|.|+|||...+--+ ...+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 4445789999999997543222 223667888877543
No 166
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.32 E-value=0.21 Score=45.93 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
.+.+++.+|+|+|||...
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 357999999999999765
No 167
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.25 E-value=0.24 Score=53.45 Aligned_cols=71 Identities=10% Similarity=0.053 Sum_probs=41.5
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEe
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl 84 (487)
+...|.+.+..++..+.|++..-+...+|.+..-+ -+.-.+.+++.+|+|+|||+.+-.-+-..+...+.+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v 542 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence 34567788888888888887544332222111000 001135799999999999987654444444443333
No 168
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.21 E-value=0.59 Score=44.28 Aligned_cols=43 Identities=12% Similarity=0.221 Sum_probs=25.0
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCCh
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~ 205 (487)
+.-.+++|||+|.+.. .....+..+....+....++++++...
T Consensus 109 ~~~~vliiDe~~~l~~------~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ------DAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp CSCEEEEEETGGGSCH------HHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCCeEEEEeCCCcCCH------HHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 3467899999999854 222445555555554334445554443
No 169
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.18 E-value=1.2 Score=43.62 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=13.7
Q ss_pred CCEEE--EcCCCchhhHHH
Q 011387 54 RDCFC--LMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv--~apTGsGKTl~~ 70 (487)
..+++ .+|+|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35777 899999999754
No 170
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=92.09 E-value=0.24 Score=55.73 Aligned_cols=79 Identities=8% Similarity=0.086 Sum_probs=65.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc----cccccCCCc
Q 011387 256 NGDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKDVR 328 (487)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~----~GiDip~v~ 328 (487)
..+.++||.++|+.-+.++++.+++ .++.+..+||+.+..+|....+.+.+|..+|+|+|...- .-++..+++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 3566899999999999999999998 567899999999998888889999999999999997422 115567899
Q ss_pred EEEEeC
Q 011387 329 LVCHFN 334 (487)
Q Consensus 329 ~VI~~~ 334 (487)
+||.-.
T Consensus 199 ~lViDE 204 (1104)
T 4ddu_A 199 FVFVDD 204 (1104)
T ss_dssp EEEESC
T ss_pred EEEEeC
Confidence 988543
No 171
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.99 E-value=0.13 Score=51.35 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=32.1
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHH-HHHHHHHH--cCCCEEEEcCCCchhhHHH
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQ-LDAIQAVL--SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q-~~~i~~~l--~~~dvlv~apTGsGKTl~~ 70 (487)
+...|.+.+-.++..+.|++..-+ |.. -+.+..+- -.+.+++.+|+|+|||+.+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~----pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIEL----PLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHH----HHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHH----HHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 445677777777777777654211 111 11121111 1378999999999999865
No 172
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.85 E-value=0.39 Score=48.11 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=36.6
Q ss_pred cccccCCCCChhHHHHHHHHHHcCCCCCcHH-HHHHHHHHH--cCCCEEEEcCCCchhhHHH
Q 011387 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVL--SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~-Q~~~i~~~l--~~~dvlv~apTGsGKTl~~ 70 (487)
.+...|.+.+-.+++.+.|++..-+ |. .-+.+..+- -.+.+|+.+|+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~----pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVEL----PLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHH----HHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHH----HhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 3556788899999999888875211 11 112222221 2378999999999999865
No 173
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.55 E-value=2.5 Score=37.52 Aligned_cols=34 Identities=18% Similarity=0.052 Sum_probs=21.8
Q ss_pred cCCCEEEEcCCCchhhHHHH-HhHh--cCCCeEEEeC
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~-lp~l--~~~~~~lvl~ 85 (487)
.|.-+++.+|+|+|||.... +... ..++.++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 35667899999999995432 3211 2356666665
No 174
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.55 E-value=0.19 Score=49.92 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=34.2
Q ss_pred cccccCCCCChhHHHHHHHHHHcCC--CCCcHHHHHHHHHHH--cCCCEEEEcCCCchhhHHH
Q 011387 12 SQTQKNKPLHEKEALVKLLRWHFGH--AQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~fg~--~~~~~~Q~~~i~~~l--~~~dvlv~apTGsGKTl~~ 70 (487)
.+...|.+.+-.++..+.|++..-+ ..+ +.+..+- -.+.+++.+|+|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~p-----e~f~~~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHP-----ELYEEMGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCC-----HHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCH-----HHHHhCCCCCCCCCceECCCCchHHHHH
Confidence 4556777888777777777764211 111 1122211 1368999999999999865
No 175
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.53 E-value=1.5 Score=42.43 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=25.1
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCCh
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~ 205 (487)
+.-.++||||+|.+.. .....+..+....+...+++++++...
T Consensus 118 ~~~~vliiDe~~~l~~------~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSR------HSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECGGGSCH------HHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CCeEEEEEECcchhcH------HHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 3457899999999853 223444455555554445555555433
No 176
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.38 E-value=0.2 Score=44.57 Aligned_cols=33 Identities=21% Similarity=0.081 Sum_probs=22.6
Q ss_pred CCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeC
Q 011387 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~ 85 (487)
|.-+++.+|+|+|||.....-+...+..++++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 456789999999999654432224566777765
No 177
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.34 E-value=0.12 Score=51.74 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=34.4
Q ss_pred cccccCCCCChhHHHHHHHHHHcC--CCCCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHH
Q 011387 12 SQTQKNKPLHEKEALVKLLRWHFG--HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~fg--~~~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~ 70 (487)
.+...|.+.+..++..+.|++..- +..+--++...+ --.+.+++.||+|+|||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 345578888888888888876421 111111111110 11368999999999999865
No 178
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.12 E-value=2.2 Score=42.52 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=27.2
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHh-CCCCcEEEEecCCChHH
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKV 207 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~ 207 (487)
...++++||++-.... +. -......+..+... -|..-++.++|+.....
T Consensus 178 ~~~DvvIIDTaGr~~~-~~-d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a 227 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGY-GE-ETKLLEEMKEMYDVLKPDDVILVIDASIGQKA 227 (433)
T ss_dssp TTCSEEEEEECCCSSS-CC-TTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG
T ss_pred cCCCEEEEECCCCccc-cC-CHHHHHHHHHHHHhhCCcceEEEEeCccchHH
Confidence 4578999999976430 01 12223444444333 34455677888865544
No 179
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.99 E-value=1.9 Score=41.24 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=25.5
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCC
Q 011387 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (487)
Q Consensus 158 ~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~ 204 (487)
..+++|+||+|.+.. .....|..+....+....+.++++..
T Consensus 110 ~~~viiiDe~~~l~~------~~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 110 GFKLIILDEADAMTN------AAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp SCEEEEETTGGGSCH------HHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CceEEEEeCCCCCCH------HHHHHHHHHHhcCCCCeEEEEEecCc
Confidence 367899999999854 22344556666666544455555443
No 180
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.55 E-value=0.58 Score=50.46 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=16.8
Q ss_pred CCEEEEcCCCchhhHHHHHhH
Q 011387 54 RDCFCLMPTGGGKSMCYQIPA 74 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~ 74 (487)
+.+++.+|+|+|||+..-.-+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 579999999999998754333
No 181
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.49 E-value=1.9 Score=41.38 Aligned_cols=17 Identities=24% Similarity=0.297 Sum_probs=14.5
Q ss_pred CEEEEcCCCchhhHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (487)
++++.||+|+|||....
T Consensus 38 ~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999997653
No 182
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.45 E-value=0.82 Score=51.71 Aligned_cols=76 Identities=9% Similarity=0.095 Sum_probs=64.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-cccccccCCCcEE
Q 011387 256 NGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLV 330 (487)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~-~~~GiDip~v~~V 330 (487)
..+.+++|.++|+.-+++.++.+.+ .++.+..+++..+..++....+.+.+|+.+|+|+|.. +...++..++.+|
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 3566899999999999998888875 3678899999999999999999999999999999964 4555777888887
Q ss_pred E
Q 011387 331 C 331 (487)
Q Consensus 331 I 331 (487)
|
T Consensus 730 I 730 (1151)
T 2eyq_A 730 I 730 (1151)
T ss_dssp E
T ss_pred E
Confidence 7
No 183
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.23 E-value=0.28 Score=48.93 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=32.0
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHH-HHHHHHH--HcCCCEEEEcCCCchhhHHH
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQ-LDAIQAV--LSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q-~~~i~~~--l~~~dvlv~apTGsGKTl~~ 70 (487)
+...|.+.+-.++..+.|++..-+ |.. .+.+..+ --.+.+++.||+|+|||+..
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~----pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVEL----PLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHH----HHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHH----HHhCHHHHHhCCCCCCceEEEECCCCCCHHHHH
Confidence 345677777777777777654211 111 1112111 12367999999999999865
No 184
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.19 E-value=0.89 Score=43.43 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=26.6
Q ss_pred HHHHHHc-----CCCEEEEcCCCchhhHHHH-HhHh--cC------CCeEEEeCcH
Q 011387 46 AIQAVLS-----GRDCFCLMPTGGGKSMCYQ-IPAL--AK------PGIVLVVSPL 87 (487)
Q Consensus 46 ~i~~~l~-----~~dvlv~apTGsGKTl~~~-lp~l--~~------~~~~lvl~P~ 87 (487)
.++.++. |.-+++.+|+|+|||...+ +..- .. ++.++++.-.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 4556664 3567899999999996543 3321 12 5677887643
No 185
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=90.07 E-value=2.9 Score=40.57 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCCCCcH-------------HHHHHHHHHHc-C-----CCEEEEcCCCchhhHHHH-Hh--HhcCCCeE
Q 011387 24 EALVKLLRWHFGHAQFRD-------------KQLDAIQAVLS-G-----RDCFCLMPTGGGKSMCYQ-IP--ALAKPGIV 81 (487)
Q Consensus 24 ~~~~~~l~~~fg~~~~~~-------------~Q~~~i~~~l~-~-----~dvlv~apTGsGKTl~~~-lp--~l~~~~~~ 81 (487)
+..++.+.+.||...+.. .=...++.++. | .-+++.+|+|+|||...+ +. +...+..+
T Consensus 26 ~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~v 105 (366)
T 1xp8_A 26 ETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTC 105 (366)
T ss_dssp HHHHHHHHHHHCTTSSCCTTSCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhCCCcceeccccccccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeE
Confidence 345566666777543211 11245677776 2 457788999999996543 21 12245666
Q ss_pred EEeCc
Q 011387 82 LVVSP 86 (487)
Q Consensus 82 lvl~P 86 (487)
+++..
T Consensus 106 lyi~~ 110 (366)
T 1xp8_A 106 AFIDA 110 (366)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 76664
No 186
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.87 E-value=0.61 Score=50.30 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
+.++++.+|+|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 468999999999999764
No 187
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.87 E-value=2.4 Score=38.04 Aligned_cols=19 Identities=16% Similarity=0.018 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
|.-+.+.+|+|+|||....
T Consensus 24 G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp TSEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4567899999999997554
No 188
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.79 E-value=2 Score=41.67 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHcCCCCCcHHH-------------HHHHHHHHc------CCCEEEEcCCCchhhHHHHHh---HhcCCCe
Q 011387 23 KEALVKLLRWHFGHAQFRDKQ-------------LDAIQAVLS------GRDCFCLMPTGGGKSMCYQIP---ALAKPGI 80 (487)
Q Consensus 23 ~~~~~~~l~~~fg~~~~~~~Q-------------~~~i~~~l~------~~dvlv~apTGsGKTl~~~lp---~l~~~~~ 80 (487)
-+..+..+.+.||-..+.+.. ...++.++. |+-+++.+++|+|||...+-- +...+..
T Consensus 14 l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~ 93 (356)
T 1u94_A 14 LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT 93 (356)
T ss_dssp HHHHHHHHHHHHCTTSSCCTTCCCBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhCCCCceEccccccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 334556666778765443322 135677775 245788999999999654322 2234566
Q ss_pred EEEeCc
Q 011387 81 VLVVSP 86 (487)
Q Consensus 81 ~lvl~P 86 (487)
++++..
T Consensus 94 vlyid~ 99 (356)
T 1u94_A 94 CAFIDA 99 (356)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 777664
No 189
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.69 E-value=2.1 Score=41.40 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=27.0
Q ss_pred HHHHHHHc-C-----CCEEEEcCCCchhhHHHH-Hh--HhcCCCeEEEeCc
Q 011387 45 DAIQAVLS-G-----RDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSP 86 (487)
Q Consensus 45 ~~i~~~l~-~-----~dvlv~apTGsGKTl~~~-lp--~l~~~~~~lvl~P 86 (487)
..++.++. | .-+++.+|+|+|||...+ +. +...++.++++.-
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 35677776 3 457889999999996543 22 2234566676653
No 190
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.47 E-value=1.6 Score=39.70 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=52.5
Q ss_pred CCceEEEEecccchHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc-------ccccccC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-------GMGIDRK 325 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~-------~~GiDip 325 (487)
.+.++||.++++.-+.++++.+++. ++.+..++|+.+...+...+ .+..+|+|+|..- ..+++..
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 4557999999999999998887764 78899999998876544332 3568999999631 1345666
Q ss_pred CCcEEEE
Q 011387 326 DVRLVCH 332 (487)
Q Consensus 326 ~v~~VI~ 332 (487)
++++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 7777664
No 191
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=89.40 E-value=0.49 Score=41.55 Aligned_cols=35 Identities=23% Similarity=0.027 Sum_probs=23.4
Q ss_pred CCCEEEEcCCCchhhHHHHHh---HhcCCCeEEEeCcH
Q 011387 53 GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPL 87 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~ 87 (487)
|+=.++.+|.|+|||.-.+-. ....+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 455688999999999432211 12346778888776
No 192
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.38 E-value=3.6 Score=40.95 Aligned_cols=46 Identities=17% Similarity=0.054 Sum_probs=26.9
Q ss_pred CEEEEcCCCchhhHHHH-Hh-Hh-cCCCeEEEeC--cHHHHHHHHHHHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQ-IP-AL-AKPGIVLVVS--PLIALMENQVIGLKE 100 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp-~l-~~~~~~lvl~--P~~~L~~q~~~~l~~ 100 (487)
-+++.+++|+|||.... +. .+ ..+.+++++. |.+.-+.+|...+..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~ 152 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLD 152 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHH
Confidence 46788999999997643 22 22 2355666655 455544444444433
No 193
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.19 E-value=1.2 Score=39.45 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=52.9
Q ss_pred CceEEEEecccchHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc------ccccccCC
Q 011387 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 326 (487)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~------~~GiDip~ 326 (487)
+.++||.++++.-+.++++.+++. +..+..++|+.+...+.+ .+.++..+|+|+|... ...++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 347999999999999999888764 788999999998765543 3455778999999631 12345566
Q ss_pred CcEEEE
Q 011387 327 VRLVCH 332 (487)
Q Consensus 327 v~~VI~ 332 (487)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666664
No 194
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.10 E-value=0.73 Score=47.32 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=54.8
Q ss_pred CceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 011387 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (487)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~ 316 (487)
++.+||.++++.-+++..+.|++.|+.+..+|++.+..++..+...+..|..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 35789999999999999999999999999999999999999999999999999999996
No 195
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.96 E-value=0.9 Score=41.47 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=29.3
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCCEEEEcCCCchhhHHHH
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l--~~~dvlv~apTGsGKTl~~~ 71 (487)
+...|.++...++....+++... .+ ....++..+- -.+.+++.+|+|+|||....
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~--~~--~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVE--FL--KNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHH--HH--HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH--HH--HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 34455566555666555554310 00 0112233221 12458999999999997543
No 196
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=88.92 E-value=1.5 Score=37.50 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=60.1
Q ss_pred EEEcCCCchhhHHHHHhHhc--CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEE
Q 011387 57 FCLMPTGGGKSMCYQIPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134 (487)
Q Consensus 57 lv~apTGsGKTl~~~lp~l~--~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 134 (487)
++..+....|-.. +.-.+. ..+++||+++++..+......|...|..+..+++......+.........+. .+++
T Consensus 12 ~~~~~~~~~K~~~-L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~--~~vL 88 (175)
T 2rb4_A 12 YVLCEHRKDKYQA-LCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK--EKVL 88 (175)
T ss_dssp EEECSSHHHHHHH-HHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS--CSEE
T ss_pred EEEcCChHhHHHH-HHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEE
Confidence 4444443345432 333333 3678999999999999999999999999999999999999888888887765 7788
Q ss_pred EeCc
Q 011387 135 YVTP 138 (487)
Q Consensus 135 ~~tp 138 (487)
++|.
T Consensus 89 vaT~ 92 (175)
T 2rb4_A 89 ITTN 92 (175)
T ss_dssp EECC
T ss_pred EEec
Confidence 7774
No 197
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.90 E-value=0.57 Score=45.23 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=26.7
Q ss_pred HHHHHHcC-----CCEEEEcCCCchhhHHHH-HhHh--c------CCCeEEEeCcH
Q 011387 46 AIQAVLSG-----RDCFCLMPTGGGKSMCYQ-IPAL--A------KPGIVLVVSPL 87 (487)
Q Consensus 46 ~i~~~l~~-----~dvlv~apTGsGKTl~~~-lp~l--~------~~~~~lvl~P~ 87 (487)
.++.++.| .-+++.+|+|+|||.... +..- . .++.++++.-.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 35566643 456889999999996543 2221 2 35678887643
No 198
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=88.84 E-value=1.6 Score=36.86 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=52.2
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCc
Q 011387 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (487)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (487)
.++++||+++++.-+....+.|...|+.+..++++.....+.........+. .+++++|.
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vlv~T~ 93 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE--YRYLVATD 93 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEECG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEEEECC
Confidence 4678999999999999999999999999999999999988888888887765 67777763
No 199
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=88.70 E-value=7 Score=36.92 Aligned_cols=18 Identities=22% Similarity=-0.116 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
++.++|.||.|+|||...
T Consensus 31 ~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 577899999999999754
No 200
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=88.50 E-value=0.7 Score=48.25 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=54.0
Q ss_pred CceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHH--hcCCCcEEEEcC
Q 011387 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW--ISSRKQVVVATV 316 (487)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f--~~g~~~vLVaT~ 316 (487)
++.+||.++++.-+++..+.|.+.|+.+..++|+++..++..+...+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 45799999999999999999999999999999999999998888888 468899999998
No 201
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=88.20 E-value=0.46 Score=48.05 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=29.9
Q ss_pred ccccCCCCChhHHHHHHHHHHcCC-CCCcHHHHHHHHHHH--cCCCEEEEcCCCchhhHHH
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGH-AQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~-~~~~~~Q~~~i~~~l--~~~dvlv~apTGsGKTl~~ 70 (487)
....|.++.-.++....+++...+ ..+ ..+..+- -.+.+++.+|+|+|||+..
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~-----~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDP-----SKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCT-----HHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhCh-----HHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 344566666666666666653210 011 1111111 1256999999999999865
No 202
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.07 E-value=6.5 Score=36.56 Aligned_cols=34 Identities=21% Similarity=0.077 Sum_probs=21.7
Q ss_pred cCCCEEEEcCCCchhhHHHH-HhHh---cCCCeEEEeC
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ-IPAL---AKPGIVLVVS 85 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~-lp~l---~~~~~~lvl~ 85 (487)
.|.-+++.||+|+|||.... +... ..+..++++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45667899999999996543 2222 1243676665
No 203
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.92 E-value=0.34 Score=40.22 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=17.3
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~ 71 (487)
.+.++++.+|+|+|||..+.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 56789999999999998764
No 204
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=87.78 E-value=5.2 Score=37.72 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=19.4
Q ss_pred CEEEEcCCCchhhHHHH-HhHh--cCCCeEEEeC
Q 011387 55 DCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp~l--~~~~~~lvl~ 85 (487)
-+++.+|+|+|||.... +... ..+++++++.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 46789999999996543 3322 2355665554
No 205
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=87.68 E-value=1.4 Score=39.82 Aligned_cols=72 Identities=8% Similarity=0.113 Sum_probs=52.7
Q ss_pred CCceEEEEecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-----cc-cccccCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FG-MGIDRKD 326 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~-----~~-~GiDip~ 326 (487)
.+..+||.++|+.-+.++++.+.+ .++.+..++|+.+.......+. ...+|+|+|.. +. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCCccc
Confidence 355799999999999888877765 4889999999998776654443 24789999962 22 2356677
Q ss_pred CcEEEE
Q 011387 327 VRLVCH 332 (487)
Q Consensus 327 v~~VI~ 332 (487)
++++|.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777763
No 206
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=87.66 E-value=3.8 Score=35.59 Aligned_cols=72 Identities=22% Similarity=0.217 Sum_probs=56.7
Q ss_pred CchhhHHHHHhHhc-CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeC
Q 011387 63 GGGKSMCYQIPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (487)
Q Consensus 63 GsGKTl~~~lp~l~-~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~t 137 (487)
...|... ++-.+. .++++||+++++.-+....+.|+..|+.+..+++......+.........+. .+++++|
T Consensus 39 ~~~K~~~-L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT 111 (191)
T 2p6n_A 39 EEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK--KDVLVAT 111 (191)
T ss_dssp GGGHHHH-HHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS--CSEEEEC
T ss_pred hHHHHHH-HHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CEEEEEc
Confidence 4566543 344443 3678999999999999999999999999999999999988888888887765 6666555
No 207
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.60 E-value=2 Score=36.57 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=52.7
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCc
Q 011387 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (487)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (487)
..+++||+++++.-+....+.|...|+.+..+++......+.........+. .+++++|.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vLvaT~ 89 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATN 89 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC--CcEEEECC
Confidence 4678999999999999999999999999999999999988888888887765 77888774
No 208
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=87.48 E-value=4 Score=41.46 Aligned_cols=34 Identities=12% Similarity=-0.155 Sum_probs=22.6
Q ss_pred CCCEEEEcCCCchhhHHHH-H--hHhcC-CCeEEEeCc
Q 011387 53 GRDCFCLMPTGGGKSMCYQ-I--PALAK-PGIVLVVSP 86 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~-l--p~l~~-~~~~lvl~P 86 (487)
|.-+++.|++|+|||...+ + -+... +..+++++-
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 3457888999999996543 2 22233 567888874
No 209
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.19 E-value=5.5 Score=36.75 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=17.2
Q ss_pred HHcCCCEEEEcCCCchhhHHHH
Q 011387 50 VLSGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 50 ~l~~~dvlv~apTGsGKTl~~~ 71 (487)
+..|.-+++.+|+|+|||....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHH
Confidence 3456778899999999996543
No 210
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.07 E-value=1.8 Score=47.32 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
.++++.||+|+|||...
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 57999999999999764
No 211
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=86.98 E-value=1 Score=47.00 Aligned_cols=63 Identities=21% Similarity=0.164 Sum_probs=48.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhH----hcC-CCeEEEeCcHHHHHHHHHHHHHH
Q 011387 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAK-PGIVLVVSPLIALMENQVIGLKE 100 (487)
Q Consensus 38 ~~~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~~lp~----l~~-~~~~lvl~P~~~L~~q~~~~l~~ 100 (487)
.++|+|+..+..+-..+-+++.++-|+|||.+....+ +.. +..+++++|+...+.+..+.++.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 4789999999887556778999999999997654222 222 45899999999999888776665
No 212
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=86.86 E-value=1.9 Score=36.41 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=52.0
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCc
Q 011387 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (487)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (487)
..+++||+++++.-+....+.|...+..+..++++.....+.........+. .+++++|.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 88 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS--SRILISTD 88 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEEEG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC--CEEEEEcC
Confidence 4678999999999999999999999999999999999988888888887765 67777663
No 213
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=86.71 E-value=2.1 Score=37.87 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=54.0
Q ss_pred cCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcc
Q 011387 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (487)
Q Consensus 76 ~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe 139 (487)
..++++||.++++.-+....+.|...|+.+..++++.....+.........+. .+++++|..
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vlvaT~~ 90 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE--VRVLVATDV 90 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSS--CCEEEECTT
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCC--CeEEEecCh
Confidence 34789999999999999999999999999999999999999888888888775 778877743
No 214
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=86.52 E-value=2.1 Score=41.45 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=18.2
Q ss_pred cCCCEEEEcCCCchhhHHHHHhH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQIPA 74 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~lp~ 74 (487)
....+++.+|+|+|||..+..-+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia 72 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLA 72 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34689999999999998765433
No 215
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.49 E-value=0.1 Score=47.53 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=31.2
Q ss_pred HHHHHhhhhcCCccEEEEeccccccccCC---CChHHHHHHHHHHHhCCCCcEEEEecCC
Q 011387 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGH---DFRPSYRKLSSLRNYLPDVPILALTATA 203 (487)
Q Consensus 147 ~~~l~~~~~~~~l~~lViDEah~~~~~g~---~f~~~~~~l~~l~~~~~~~~~i~lSAT~ 203 (487)
+..+.........+++|+|-...+..... ..+.....|..+.+.+ ++++++++-..
T Consensus 124 ~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~-~i~vi~~~q~~ 182 (251)
T 2zts_A 124 LRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-GVTTILTTEAP 182 (251)
T ss_dssp HHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-CCEEEEEECCC
T ss_pred HHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHc-CCCeEEEEEEe
Confidence 33444445555688999999887743221 1233334444444443 67777776543
No 216
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=86.45 E-value=1.2 Score=39.90 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=50.8
Q ss_pred CCceEEEEecccchHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc------ccccccC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRK 325 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~------~~GiDip 325 (487)
.+.++||.++++.-+.++++.+++. ++.+..++|+.+..++...+ ...+|+|+|.-- ...++..
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 4567999999999999999988763 67889999999876654432 357899999731 1234555
Q ss_pred CCcEEE
Q 011387 326 DVRLVC 331 (487)
Q Consensus 326 ~v~~VI 331 (487)
++++||
T Consensus 166 ~~~~lV 171 (230)
T 2oxc_A 166 SIRLFI 171 (230)
T ss_dssp GCCEEE
T ss_pred cCCEEE
Confidence 566655
No 217
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.15 E-value=0.98 Score=40.84 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~ 71 (487)
.|.-+.+.+|+|+|||....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHH
Confidence 45678899999999997543
No 218
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=85.78 E-value=1.4 Score=44.81 Aligned_cols=54 Identities=13% Similarity=0.047 Sum_probs=29.7
Q ss_pred ccccCCCCChhHHHHHHHHHHcC-CCCCcHHHHHHHHHHH--cCCCEEEEcCCCchhhHHHH
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFG-HAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg-~~~~~~~Q~~~i~~~l--~~~dvlv~apTGsGKTl~~~ 71 (487)
....|.++.-.++....+++... +..+ ..+..+- -.+.+++.+|+|+|||+...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~-----~~~~~lg~~ip~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCG-----GGTTTTSCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhch-----hhhhhccCCCCceEEEECCCCCCHHHHHH
Confidence 44566677766666666654311 0000 0010000 02458999999999998653
No 219
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=84.98 E-value=1.5 Score=47.59 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~l 72 (487)
++.+++.+|+|+|||.....
T Consensus 238 ~~~vLL~Gp~GtGKTtLara 257 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 56799999999999986543
No 220
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=84.37 E-value=2.2 Score=36.95 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=48.3
Q ss_pred CchhhHHH--HHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeC
Q 011387 63 GGGKSMCY--QIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (487)
Q Consensus 63 GsGKTl~~--~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~t 137 (487)
...|-... ++-....+.++||+++++.-+....+.|+..|+.+..++++.....+.........+. .+++++|
T Consensus 29 ~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vLvaT 103 (185)
T 2jgn_A 29 ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVAT 103 (185)
T ss_dssp GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS--SSEEEEE
T ss_pred cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC--CeEEEEc
Confidence 45665322 2222224678999999999999999999999999999999888887777777777665 6676666
No 221
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.00 E-value=2.9 Score=49.45 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=30.5
Q ss_pred HHHHHHc------CCCEEEEcCCCchhhHHHH---HhHhcCCCeEEEeCcH
Q 011387 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPL 87 (487)
Q Consensus 46 ~i~~~l~------~~dvlv~apTGsGKTl~~~---lp~l~~~~~~lvl~P~ 87 (487)
.++.++. ++.+++.+|+|+|||.... ..+...+.+++++..-
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 3677776 5789999999999997543 2334457777777754
No 222
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=83.90 E-value=2.1 Score=38.08 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=47.0
Q ss_pred CCceEEEEecccchHHHHHHHHHhC---CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc------ccccccCCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKDV 327 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~---g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~------~~GiDip~v 327 (487)
.+.++||.++++.-+.++++.+.+. ++.+..++|+.+...+...+ . ...+|+|+|.-- ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999999988873 67888899887765443322 2 347899999621 223456667
Q ss_pred cEEEE
Q 011387 328 RLVCH 332 (487)
Q Consensus 328 ~~VI~ 332 (487)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 76663
No 223
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=83.88 E-value=2.9 Score=39.65 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=17.9
Q ss_pred HHHHHHcC-----CCEEEEcCCCchhhHHH
Q 011387 46 AIQAVLSG-----RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 46 ~i~~~l~~-----~dvlv~apTGsGKTl~~ 70 (487)
.++.++.| .-+++.+|+|+|||...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 45556643 45788999999999654
No 224
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=83.46 E-value=0.67 Score=46.31 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=31.5
Q ss_pred cCCCEEEEcCCCchhhHHH--HHhHh-cCCCeEEEeCcHHHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY--QIPAL-AKPGIVLVVSPLIALME 92 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~--~lp~l-~~~~~~lvl~P~~~L~~ 92 (487)
...+++|.|+||+|||... +++.+ ..+..++|+=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 4579999999999999875 44443 35778888889877754
No 225
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=83.01 E-value=5.4 Score=40.00 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=20.2
Q ss_pred HHHHHH---HcCCCEEEEcCCCchhhHHH
Q 011387 45 DAIQAV---LSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 45 ~~i~~~---l~~~dvlv~apTGsGKTl~~ 70 (487)
++|+.+ .+|+.+++.+|.|.|||...
T Consensus 140 r~ID~L~pi~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 140 KVVDLLAPYIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp HHHHHHSCEETTCEEEEECCSSSCHHHHH
T ss_pred hHHHHHhhhccCCEEEEECCCCCCccHHH
Confidence 356554 36888999999999999653
No 226
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=82.47 E-value=3.1 Score=36.19 Aligned_cols=72 Identities=19% Similarity=0.131 Sum_probs=50.3
Q ss_pred CCceEEEEecccchHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-----cc-cccccCCCc
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FG-MGIDRKDVR 328 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~-----~~-~GiDip~v~ 328 (487)
.+.++||.++++.-+.++++.+++. +..+..++|+.+.......+. ...+|+|+|.. +. ..++..+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3567999999999999999999875 467888999887654433322 35789999962 11 234556666
Q ss_pred EEEE
Q 011387 329 LVCH 332 (487)
Q Consensus 329 ~VI~ 332 (487)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 227
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=82.24 E-value=3.4 Score=35.91 Aligned_cols=72 Identities=18% Similarity=0.139 Sum_probs=49.8
Q ss_pred CCceEEEEecccchHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-----ccc-ccccC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM-GIDRK 325 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~-----~~~-GiDip 325 (487)
.+.++||.++++.-++++++.+.+. +..+..++|+.+..+.... ..+..+|+|+|.. +.. .++..
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3457999999999999998888753 6788899999876553322 2356789999962 112 23455
Q ss_pred CCcEEEE
Q 011387 326 DVRLVCH 332 (487)
Q Consensus 326 ~v~~VI~ 332 (487)
++++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 6666663
No 228
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=82.16 E-value=1.6 Score=38.79 Aligned_cols=31 Identities=26% Similarity=0.270 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHcCCCEEEEcCCCchhhHHH
Q 011387 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 40 ~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~ 70 (487)
+..|..++..+..|.-+.+.+|.|+|||...
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 4467788888888988999999999999654
No 229
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=81.96 E-value=5.4 Score=46.54 Aligned_cols=37 Identities=16% Similarity=-0.017 Sum_probs=23.2
Q ss_pred cCCCcEEEEeCCCCCHHHH--HHHHhccCCCCCCceEEE
Q 011387 324 RKDVRLVCHFNIPKSMEAF--YQESGRAGRDQLPSKSLL 360 (487)
Q Consensus 324 ip~v~~VI~~~~p~s~~~y--~Qr~GRagR~g~~g~~i~ 360 (487)
+|.-+.+..|+.|.+-.+. .|-+..++..|.+|..+.
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~ 1117 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1117 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEE
Confidence 5567788999999875554 344555555555554444
No 230
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=81.62 E-value=6 Score=38.17 Aligned_cols=43 Identities=19% Similarity=0.098 Sum_probs=27.0
Q ss_pred HHHHHHHc-C-----CCEEEEcCCCchhhHHHH-HhH--hcCCCeEEEeCcH
Q 011387 45 DAIQAVLS-G-----RDCFCLMPTGGGKSMCYQ-IPA--LAKPGIVLVVSPL 87 (487)
Q Consensus 45 ~~i~~~l~-~-----~dvlv~apTGsGKTl~~~-lp~--l~~~~~~lvl~P~ 87 (487)
..++.++. | .-+++.+|+|+|||...+ +.. ...++.++++..-
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 35666776 3 457889999999996433 221 1245667777653
No 231
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.53 E-value=2.7 Score=39.18 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
...+++.+|+|+|||....
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999997653
No 232
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=81.18 E-value=2.1 Score=46.86 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=14.2
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
.+++.+|||+|||...
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999865
No 233
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=80.85 E-value=11 Score=33.67 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=13.8
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
++++.++.|.|||...
T Consensus 8 ~I~~~~kgGvGKTt~a 23 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAM 23 (228)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5788999999999764
No 234
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=80.59 E-value=7.7 Score=35.41 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=51.4
Q ss_pred CCceEEEEecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-----c--ccccccC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----F--GMGIDRK 325 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~-----~--~~GiDip 325 (487)
.+.++||.++|+.-++++++.+++ .+..+..++|+.+.......+ ..+ .+|+|+|.- + ..+++..
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 456799999999999999988876 356778889988765543332 334 899999951 1 1246667
Q ss_pred CCcEEEE
Q 011387 326 DVRLVCH 332 (487)
Q Consensus 326 ~v~~VI~ 332 (487)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777764
No 235
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=80.03 E-value=2.7 Score=37.79 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=44.6
Q ss_pred CCceEEEEecccchHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cccc-ccccCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGM-GIDRKD 326 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~-----~~~~-GiDip~ 326 (487)
.+.++||.++++.-+.++++.+++. +..+..++|+.+.... .+.+..+..+|+|+|. .+.. .++..+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999999988764 5677788887654332 3344567789999994 2222 245556
Q ss_pred CcEEEE
Q 011387 327 VRLVCH 332 (487)
Q Consensus 327 v~~VI~ 332 (487)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777664
No 236
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=79.55 E-value=2 Score=40.86 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=19.4
Q ss_pred HHHHcCCCEEEEcCCCchhhHHHH
Q 011387 48 QAVLSGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 48 ~~~l~~~dvlv~apTGsGKTl~~~ 71 (487)
..+..++++++.+|+|+|||....
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHH
Confidence 445578899999999999997653
No 237
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=79.30 E-value=6.8 Score=36.77 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=53.6
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcc
Q 011387 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (487)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe 139 (487)
.++.+||.++++.-+....+.|...|+.+..+++......+..+......+. .+++++|..
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~--~~vLVaT~v 87 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE--VRVLVATDV 87 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTS--CCEEEECST
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC--ceEEEEech
Confidence 4789999999999999999999999999999999999988888888888775 788888753
No 238
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=79.29 E-value=2 Score=43.71 Aligned_cols=29 Identities=34% Similarity=0.369 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCCEEEEcCCCchhhHHHHH
Q 011387 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 44 ~~~i~~~l~~~dvlv~apTGsGKTl~~~l 72 (487)
..+..++..+.++++.||+|+|||.....
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHHH
Confidence 34445566789999999999999986543
No 239
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.04 E-value=13 Score=44.22 Aligned_cols=42 Identities=17% Similarity=0.119 Sum_probs=27.0
Q ss_pred HHHHHHHc------CCCEEEEcCCCchhhHHHHHh---HhcCCCeEEEeCc
Q 011387 45 DAIQAVLS------GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSP 86 (487)
Q Consensus 45 ~~i~~~l~------~~dvlv~apTGsGKTl~~~lp---~l~~~~~~lvl~P 86 (487)
..++.++. |.-+++.+|+|+|||...+-- +...+..+++++-
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~ 419 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 419 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 35666775 356788999999999654322 2233566777764
No 240
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=78.94 E-value=4.6 Score=36.02 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=47.8
Q ss_pred CCceEEEEecccchHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc-----cc--ccccC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GM--GIDRK 325 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~-----~~--GiDip 325 (487)
.+.++||.++++.-+.++++.+++. ++.+..++|+.+.......+ +..+|+|+|... .. .++..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 4567999999999999999888764 47888999987655433322 467899999631 11 24555
Q ss_pred CCcEEE
Q 011387 326 DVRLVC 331 (487)
Q Consensus 326 ~v~~VI 331 (487)
++++||
T Consensus 171 ~~~~lV 176 (236)
T 2pl3_A 171 DLQMLV 176 (236)
T ss_dssp TCCEEE
T ss_pred cccEEE
Confidence 666665
No 241
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=78.82 E-value=5.3 Score=36.11 Aligned_cols=71 Identities=8% Similarity=0.012 Sum_probs=50.2
Q ss_pred CceEEEEecccchHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc------ccccccCCC
Q 011387 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKDV 327 (487)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~------~~GiDip~v 327 (487)
+.++||.++++.-+.++++.+++. ++.+..++|+.+.......+ ....+|+|+|..- ...+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 457999999999999988887753 56788889888765433222 3567999999732 123566677
Q ss_pred cEEEE
Q 011387 328 RLVCH 332 (487)
Q Consensus 328 ~~VI~ 332 (487)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77764
No 242
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=78.20 E-value=1.4 Score=42.18 Aligned_cols=17 Identities=29% Similarity=0.204 Sum_probs=14.2
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
+-+++.+|||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35789999999999764
No 243
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=78.16 E-value=12 Score=36.66 Aligned_cols=33 Identities=15% Similarity=0.050 Sum_probs=21.4
Q ss_pred CCEEEEcCCCchhhHHHH-Hh--Hhc------CCCeEEEeCc
Q 011387 54 RDCFCLMPTGGGKSMCYQ-IP--ALA------KPGIVLVVSP 86 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lp--~l~------~~~~~lvl~P 86 (487)
.-+.+.+|+|+|||.... +. .+. .++.++++.-
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 557889999999996544 22 122 2456777753
No 244
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=78.08 E-value=2 Score=38.10 Aligned_cols=71 Identities=14% Similarity=0.086 Sum_probs=43.9
Q ss_pred CCceEEEEecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc------ccccccCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 326 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~------~~GiDip~ 326 (487)
.+.++||.++++.-+.++++.+.+ .++.+..++|+.+..+.... + ...+|+|+|... ...++..+
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCCEEEECHHHHHHHHHhCCcchhh
Confidence 455899999999999999888875 36788899998765543322 2 237899999632 22344556
Q ss_pred CcEEEE
Q 011387 327 VRLVCH 332 (487)
Q Consensus 327 v~~VI~ 332 (487)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666663
No 245
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=78.04 E-value=1 Score=41.84 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=30.9
Q ss_pred ccccCCCCChhHHHHHHHHHHcCCCCCcHH-HHHHHHHHH--cCCCEEEEcCCCchhhHHHH
Q 011387 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVL--SGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~~~~-Q~~~i~~~l--~~~dvlv~apTGsGKTl~~~ 71 (487)
+...|.+++..+++.+.|++..- .|+ ..+++..+- -.+.+++.+|+|+|||...-
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~----~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL----APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT----HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH----HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34578888888888888886431 222 123333321 12459999999999997653
No 246
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=77.83 E-value=17 Score=36.58 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=19.2
Q ss_pred CEEEEcCCCchhhHHHH-HhHhc--CCCeEEEe
Q 011387 55 DCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVV 84 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp~l~--~~~~~lvl 84 (487)
-+.+++|+|+|||...- +..+. .++.+++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 46789999999996542 22222 35666665
No 247
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=77.71 E-value=9 Score=37.28 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=51.7
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCc
Q 011387 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (487)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (487)
.++++||+++++.-+....+.|...+..+..+++.....++.........+. .+++++|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlvaT~ 334 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVATA 334 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS--SCEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC--CCEEEECC
Confidence 4778999999999999999999999999999999999988888888887765 56666554
No 248
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=77.47 E-value=20 Score=33.46 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
++-+.+.+|+|+|||....
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3457789999999996543
No 249
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=76.98 E-value=2.3 Score=33.11 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=33.5
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCH
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 294 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~ 294 (487)
++.++++||.+-..+...+..|.+.|+++..+.||+..
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 55789999999888999999999999999999998753
No 250
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=76.87 E-value=2.2 Score=43.54 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=22.9
Q ss_pred CcHHHHHHHHH-HHcCCCEEEEcCCCchhhHH
Q 011387 39 FRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMC 69 (487)
Q Consensus 39 ~~~~Q~~~i~~-~l~~~dvlv~apTGsGKTl~ 69 (487)
+.+.+..-+.. +-.|..+++.+|||||||..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 55555555544 45678899999999999964
No 251
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=76.38 E-value=1.9 Score=42.81 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=22.0
Q ss_pred CcHHHHHHHHHHHc--CCCEEEEcCCCchhhHH
Q 011387 39 FRDKQLDAIQAVLS--GRDCFCLMPTGGGKSMC 69 (487)
Q Consensus 39 ~~~~Q~~~i~~~l~--~~dvlv~apTGsGKTl~ 69 (487)
+.+.+..++..++. +.-+++.+|||||||..
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 34556667766654 33578999999999964
No 252
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=76.18 E-value=3.6 Score=41.53 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=40.0
Q ss_pred cCCCEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHc
Q 011387 52 SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK 101 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (487)
.+....+.+-||||||+...--+-..+..+|||+|....+.+..+.|+.+
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~ 62 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhh
Confidence 34567899999999998643333334678999999999999999999986
No 253
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=75.75 E-value=1.6 Score=41.30 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=13.7
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
+-+++.+|||+|||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34678999999999764
No 254
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=75.06 E-value=6.5 Score=38.85 Aligned_cols=71 Identities=17% Similarity=0.112 Sum_probs=53.6
Q ss_pred CCceEEEEecccchHHHHHHHHHhC-CC---ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc------cccccCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAG-GI---SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG------MGIDRKD 326 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~-g~---~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~------~GiDip~ 326 (487)
.+.++||.|+++.-+.+.++.+.+. +. .+..+||+....++..... ..+|+|+|.-.- ..++..+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5678999999999999999988875 55 8999999998877654432 468999996321 1355667
Q ss_pred CcEEEE
Q 011387 327 VRLVCH 332 (487)
Q Consensus 327 v~~VI~ 332 (487)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 888773
No 255
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=74.88 E-value=2.3 Score=32.68 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=32.9
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (487)
++.++++||.+-..+...+..|.+.|+++..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4578999999998999999999999999999998864
No 256
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=74.56 E-value=1.8 Score=37.13 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|+-+++++|+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999754
No 257
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=74.49 E-value=1.8 Score=33.07 Aligned_cols=37 Identities=14% Similarity=0.406 Sum_probs=32.8
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (487)
++.++++||.+-..+...+..|.+.|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4578999999988899999999999999899999864
No 258
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=74.47 E-value=1.9 Score=39.45 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=17.0
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~ 71 (487)
.+..+++.+|+|+|||....
T Consensus 28 ~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 45789999999999998654
No 259
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=74.10 E-value=7.7 Score=36.78 Aligned_cols=36 Identities=11% Similarity=-0.034 Sum_probs=22.8
Q ss_pred CEEEEcCCCchhhHHHHHh---HhcC--CCeEEEeCcHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQIP---ALAK--PGIVLVVSPLIAL 90 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~lp---~l~~--~~~~lvl~P~~~L 90 (487)
-+++.+|+|+|||...+-. +... +++++++..--++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh
Confidence 4678999999999653311 1222 5677777654444
No 260
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=73.83 E-value=2 Score=40.55 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.1
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
-+++.+|||+|||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3678999999999754
No 261
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=73.45 E-value=2 Score=37.57 Aligned_cols=20 Identities=20% Similarity=0.085 Sum_probs=17.0
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~ 71 (487)
.++.+++.+|+|+|||....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 56788999999999998754
No 262
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=73.43 E-value=10 Score=35.99 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=51.5
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCc
Q 011387 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (487)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (487)
.+.++||+++++.-+....+.|+..+..+..+++......+.........+. .+++++|.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~ 296 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKK--IRILIATD 296 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTS--SSEEEECT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCC--CeEEEECC
Confidence 3678999999999999999999999999999999999988888888887765 66766663
No 263
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=73.34 E-value=9.2 Score=37.04 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=52.6
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCc
Q 011387 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (487)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (487)
++++||+++++.-+....+.|...+..+..+++.....++..+......+. .+++++|.
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 324 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK--EKVLVTTN 324 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC--CcEEEEcC
Confidence 578999999999999999999999999999999999999988888888776 67777775
No 264
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=73.29 E-value=2 Score=40.62 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=23.0
Q ss_pred cCCCEEEEcCCCchhhHHHH-HhHhcCCCeEEEeCc
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ-IPALAKPGIVLVVSP 86 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~-lp~l~~~~~~lvl~P 86 (487)
.|+-+.+++|+|+|||.... +.-+. .|.++..+|
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~ 159 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFAN 159 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGG
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEec
Confidence 56778899999999996543 33333 666655443
No 265
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=72.58 E-value=11 Score=36.19 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=52.6
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCc
Q 011387 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (487)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (487)
.++++||+++++.-+....+.|...|+.+..++++.....+.........+. .+++++|.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~ 308 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATN 308 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTC--CSEEEESC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC--CcEEEECC
Confidence 4688999999999999999999999999999999999988888888887765 67877774
No 266
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=72.53 E-value=2.9 Score=32.37 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=31.9
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCCceEEecCCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l 292 (487)
++.++++||.+-..+...+..|.+.|+.+..+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 457899999998889999999999999988888876
No 267
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=72.51 E-value=2.2 Score=41.33 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=17.7
Q ss_pred HHcCCCEEEEcCCCchhhHHH
Q 011387 50 VLSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 50 ~l~~~dvlv~apTGsGKTl~~ 70 (487)
+..|..+++++|||||||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 447889999999999999753
No 268
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=72.42 E-value=2 Score=37.57 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|+-+.+++|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999754
No 269
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=72.11 E-value=2.1 Score=36.61 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=16.4
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~l 72 (487)
++.+++.+++|||||.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46789999999999987643
No 270
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=71.86 E-value=10 Score=36.35 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=52.4
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCc
Q 011387 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (487)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (487)
++++||+++++.-+....+.|+..+..+..+++.....++.........+. .+++++|.
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 301 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGR--SKVLITTN 301 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CCEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCC--CCEEEECC
Confidence 678999999999999999999999999999999999999988888888776 67777764
No 271
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=71.86 E-value=10 Score=36.59 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=52.5
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCc
Q 011387 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (487)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (487)
..+++||+++++.-+....+.|+..|..+..+++......+.........+. .+++++|.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T~ 316 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK--VRTLVCSD 316 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS--SSEEEESS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC--CcEEEEcC
Confidence 3578999999999999999999999999999999999998888888887765 77887774
No 272
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=71.85 E-value=2.6 Score=40.82 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=17.5
Q ss_pred HHHHHHcCCCEE--EEcCCCchhhHH
Q 011387 46 AIQAVLSGRDCF--CLMPTGGGKSMC 69 (487)
Q Consensus 46 ~i~~~l~~~dvl--v~apTGsGKTl~ 69 (487)
.++.+++|.++. .-+.||||||..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 345567888754 556999999975
No 273
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=71.39 E-value=2.3 Score=37.45 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~ 71 (487)
.|+-+++.+|+|+|||....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 35567889999999997653
No 274
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=71.37 E-value=1.9 Score=39.81 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=16.2
Q ss_pred HcCCCEEEEcCCCchhhHHH
Q 011387 51 LSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 51 l~~~dvlv~apTGsGKTl~~ 70 (487)
..|.-+++.+|||||||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 35667889999999999653
No 275
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=71.20 E-value=37 Score=34.32 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=20.2
Q ss_pred CEEEEcCCCchhhHHHH-Hh-Hh-cCCCeEEEeCc
Q 011387 55 DCFCLMPTGGGKSMCYQ-IP-AL-AKPGIVLVVSP 86 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp-~l-~~~~~~lvl~P 86 (487)
.+++++++|+|||.... +. .+ ..+.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 46788999999996543 22 12 23566666654
No 276
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=71.18 E-value=1.7 Score=38.23 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCchhhHH
Q 011387 53 GRDCFCLMPTGGGKSMC 69 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~ 69 (487)
++-+++.+|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 56689999999999854
No 277
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=70.63 E-value=20 Score=32.41 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (487)
..+++.+++|||||.....
T Consensus 33 ~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp EEEEEESCGGGTTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578899999999986543
No 278
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=70.31 E-value=3.4 Score=34.96 Aligned_cols=20 Identities=20% Similarity=0.003 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~l 72 (487)
++-+++.+++|||||.+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45678999999999987643
No 279
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=70.07 E-value=2.5 Score=40.45 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=17.6
Q ss_pred HHcCCCEEEEcCCCchhhHHH
Q 011387 50 VLSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 50 ~l~~~dvlv~apTGsGKTl~~ 70 (487)
+..|+.+++.+|||||||...
T Consensus 168 i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH
Confidence 346889999999999999743
No 280
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=69.90 E-value=3 Score=40.77 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=26.0
Q ss_pred cCCCEEEEcCCCchhhHHHHHh---HhcCCCeEEEeCcHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIA 89 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~lp---~l~~~~~~lvl~P~~~ 89 (487)
.+.++++.+|||+|||.....- ....+..++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 4678999999999999654321 2234667777766543
No 281
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=69.80 E-value=6.1 Score=34.91 Aligned_cols=47 Identities=26% Similarity=0.350 Sum_probs=30.4
Q ss_pred ChhHHHHHHHHHHcCCCCCcHHHHHHHHHHHcC----CCEEEEcCCCchhhHHH
Q 011387 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 21 ~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l~~----~dvlv~apTGsGKTl~~ 70 (487)
+-...+.+.|+-. |+ ++-.+ ...+..++++ +.+++.+|+|+|||..+
T Consensus 25 ~~w~~I~~~l~yq-~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 25 GDWRPIVQFLRYQ-QI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp CCSHHHHHHHHHT-TC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred CCHHHHHHHHHHc-Cc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3455677777632 43 35445 4556666655 24889999999999654
No 282
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=69.61 E-value=6.4 Score=40.05 Aligned_cols=71 Identities=8% Similarity=0.058 Sum_probs=48.4
Q ss_pred CceEEEEecccchHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc-----cc-c-ccCC
Q 011387 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-----MG-I-DRKD 326 (487)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~-----~G-i-Dip~ 326 (487)
+.++||.++++.-+.+.++.+.+. ++.+..+||+.+...+...+. ...+|+|+|.-.- .| + +..+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999999888888764 899999999987655432221 2368999996422 22 3 5667
Q ss_pred CcEEEE
Q 011387 327 VRLVCH 332 (487)
Q Consensus 327 v~~VI~ 332 (487)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888874
No 283
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=69.54 E-value=12 Score=36.38 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=51.9
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCc
Q 011387 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (487)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (487)
.+++||+++++.-+....+.|...|+.+..++++.....+.........+. .+++++|.
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 334 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA--SRVLISTD 334 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS--SCEEEECG
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC--CCEEEECC
Confidence 568999999999999999999999999999999999998888888888775 67777765
No 284
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=69.50 E-value=2.1 Score=35.97 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=14.4
Q ss_pred CEEEEcCCCchhhHHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (487)
-+++.||+|||||.....
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999986543
No 285
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=69.42 E-value=3.8 Score=39.75 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~l 72 (487)
..++++.+|+|+|||.....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 45799999999999987643
No 286
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=69.39 E-value=37 Score=32.11 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=25.8
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHH-HhCCCCcEEEEecCCChHHHH
Q 011387 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLR-NYLPDVPILALTATAAPKVQK 209 (487)
Q Consensus 159 l~~lViDEah~~~~~g~~f~~~~~~l~~l~-~~~~~~~~i~lSAT~~~~~~~ 209 (487)
.+++++|.+...... ......|..+. ...|+.+++++.++.......
T Consensus 212 ~d~vliDtaG~~~~~----~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~ 259 (328)
T 3e70_C 212 IDVVLIDTAGRSETN----RNLMDEMKKIARVTKPNLVIFVGDALAGNAIVE 259 (328)
T ss_dssp CSEEEEEECCSCCTT----TCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHH
T ss_pred chhhHHhhccchhHH----HHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHH
Confidence 567888988764321 11123333332 234667777888777655444
No 287
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=69.36 E-value=4.9 Score=40.83 Aligned_cols=71 Identities=11% Similarity=0.162 Sum_probs=50.2
Q ss_pred CceEEEEecccchHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc-----ccc-c-ccCC
Q 011387 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKD 326 (487)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~-----~~G-i-Dip~ 326 (487)
+.++||.++++.-+.+.++.+.+. ++.+..+||+.+...+...+. +..+|+|+|.-. ..+ + +..+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999988888877764 899999999986554422221 247899999632 112 2 4556
Q ss_pred CcEEEE
Q 011387 327 VRLVCH 332 (487)
Q Consensus 327 v~~VI~ 332 (487)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777773
No 288
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=69.25 E-value=3 Score=39.73 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.7
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
.+++.+|||+|||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 289
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=69.22 E-value=2.4 Score=39.79 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
..+++.+|+|+|||..+.
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999997653
No 290
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=69.05 E-value=3.1 Score=35.06 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~l 72 (487)
++.+++.+|.|||||...-+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46789999999999986543
No 291
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=68.92 E-value=24 Score=32.62 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=19.7
Q ss_pred CEEEEcCCCchhhHHHHHhHhcCCCeEEEeCc
Q 011387 55 DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P 86 (487)
-+++.||+|||||...-.-+-......++|+.
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 47889999999997654322222223455554
No 292
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=68.87 E-value=8.2 Score=41.67 Aligned_cols=71 Identities=8% Similarity=0.075 Sum_probs=48.1
Q ss_pred CceEEEEecccchHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc-----ccc-c-ccCC
Q 011387 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKD 326 (487)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~-----~~G-i-Dip~ 326 (487)
+.++||.|+++.-+.+.++.+++. ++.+..+||+.+...+...+. +..+|+|+|.-. ..+ + +..+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999999988888764 899999999987665433221 357899999631 122 3 4556
Q ss_pred CcEEEE
Q 011387 327 VRLVCH 332 (487)
Q Consensus 327 v~~VI~ 332 (487)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788773
No 293
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=68.63 E-value=2.6 Score=38.48 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=12.8
Q ss_pred EEEEcCCCchhhHHH
Q 011387 56 CFCLMPTGGGKSMCY 70 (487)
Q Consensus 56 vlv~apTGsGKTl~~ 70 (487)
+++.+|||||||...
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 678999999999754
No 294
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=68.62 E-value=3.4 Score=39.40 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=18.0
Q ss_pred HHHHHHcCCCE--EEEcCCCchhhHHH
Q 011387 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (487)
Q Consensus 46 ~i~~~l~~~dv--lv~apTGsGKTl~~ 70 (487)
.++.+++|.++ +.-++||||||..-
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 34456788875 55679999999763
No 295
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=68.27 E-value=2.3 Score=40.10 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.9
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~ 71 (487)
.+..+++.+|+|+|||....
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 35789999999999998754
No 296
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=68.10 E-value=3.4 Score=35.18 Aligned_cols=20 Identities=15% Similarity=-0.004 Sum_probs=16.8
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~ 71 (487)
.++.+++.+++|+|||....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45779999999999998654
No 297
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=68.02 E-value=6 Score=44.24 Aligned_cols=74 Identities=8% Similarity=0.143 Sum_probs=56.1
Q ss_pred CCceEEEEecccchHHHHHHHHHh----CCC----ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-cccccc-cCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSA----GGI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGID-RKD 326 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~----~g~----~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~-~~~GiD-ip~ 326 (487)
.+.++||.++|+.-+.++++.+++ .++ .+..+||+.+..++.+..+.+.+ .+|+|+|+. +..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 456799999999999999888875 356 78999999999888777777766 899999973 111111 446
Q ss_pred CcEEEE
Q 011387 327 VRLVCH 332 (487)
Q Consensus 327 v~~VI~ 332 (487)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 298
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=67.81 E-value=2.6 Score=37.02 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|+-+++++|+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5777889999999999754
No 299
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=67.75 E-value=3.1 Score=35.76 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=17.0
Q ss_pred cCCCEEEEcCCCchhhHHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~l 72 (487)
.+..+++.+++|||||.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEM 29 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 356789999999999987643
No 300
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=67.61 E-value=3.5 Score=31.01 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=31.2
Q ss_pred ceEEEEecccchHHHHHHHHHhCCCceEEecCCCC
Q 011387 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (487)
Q Consensus 259 ~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (487)
.++++||.+-..+...+..|.+.|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988899999999999998888888875
No 301
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=67.57 E-value=3.1 Score=36.13 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|.-+.+.+|+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4666789999999999754
No 302
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=67.56 E-value=5.6 Score=31.80 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=32.9
Q ss_pred CC-ceEEEEe-cccchHHHHHHHHHhCCCceEEecCCCCHH
Q 011387 257 GD-TCAIVYC-LERTTCDELSAYLSAGGISCAAYHAGLNDK 295 (487)
Q Consensus 257 ~~-~~~iIf~-~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~ 295 (487)
++ .+++||| .+-..+...+..|...|+++..+.||+..-
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 44 7899999 577778899999999999999999998643
No 303
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=67.32 E-value=2.8 Score=36.53 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~ 71 (487)
.|.-+.+.+|+|||||...-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56678899999999997643
No 304
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=67.25 E-value=3.7 Score=39.69 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=17.6
Q ss_pred HHHHHHcCCCEE--EEcCCCchhhHH
Q 011387 46 AIQAVLSGRDCF--CLMPTGGGKSMC 69 (487)
Q Consensus 46 ~i~~~l~~~dvl--v~apTGsGKTl~ 69 (487)
.++.+++|.++. .-++||||||..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 345567888764 456999999976
No 305
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=67.21 E-value=3.7 Score=39.89 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=17.0
Q ss_pred HHHHHcCCCEE--EEcCCCchhhHH
Q 011387 47 IQAVLSGRDCF--CLMPTGGGKSMC 69 (487)
Q Consensus 47 i~~~l~~~dvl--v~apTGsGKTl~ 69 (487)
++.+++|.++. .-++||||||..
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEe
Confidence 34567888754 556999999975
No 306
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=67.02 E-value=2.9 Score=36.57 Aligned_cols=20 Identities=20% Similarity=0.100 Sum_probs=16.6
Q ss_pred HcCCCEEEEcCCCchhhHHH
Q 011387 51 LSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 51 l~~~dvlv~apTGsGKTl~~ 70 (487)
..++-+++.+|+|+|||...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 35678899999999999754
No 307
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=66.97 E-value=3 Score=36.26 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=14.0
Q ss_pred CCEEEEcCCCchhhHH
Q 011387 54 RDCFCLMPTGGGKSMC 69 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~ 69 (487)
+-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999975
No 308
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=66.87 E-value=3.9 Score=39.51 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=17.9
Q ss_pred HHHHHHcCCCE--EEEcCCCchhhHH
Q 011387 46 AIQAVLSGRDC--FCLMPTGGGKSMC 69 (487)
Q Consensus 46 ~i~~~l~~~dv--lv~apTGsGKTl~ 69 (487)
.++.+++|.++ +.-++||||||..
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceE
Confidence 34556788876 4566999999976
No 309
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=66.82 E-value=3.8 Score=39.72 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=17.1
Q ss_pred HHHHHcCCCE--EEEcCCCchhhHH
Q 011387 47 IQAVLSGRDC--FCLMPTGGGKSMC 69 (487)
Q Consensus 47 i~~~l~~~dv--lv~apTGsGKTl~ 69 (487)
++.+++|.++ +.-++||||||..
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceE
Confidence 3445688775 5567999999976
No 310
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=66.79 E-value=2.6 Score=36.27 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~ 71 (487)
.|+-+++.+|+|+|||...-
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46678899999999997653
No 311
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=66.70 E-value=3.5 Score=39.63 Aligned_cols=23 Identities=35% Similarity=0.639 Sum_probs=17.0
Q ss_pred HHHHHcCCCE--EEEcCCCchhhHH
Q 011387 47 IQAVLSGRDC--FCLMPTGGGKSMC 69 (487)
Q Consensus 47 i~~~l~~~dv--lv~apTGsGKTl~ 69 (487)
++.+++|.++ +.-++||||||..
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeE
Confidence 3445678775 5567999999976
No 312
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=66.68 E-value=3.9 Score=39.42 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=16.7
Q ss_pred HHHHcCCCE--EEEcCCCchhhHH
Q 011387 48 QAVLSGRDC--FCLMPTGGGKSMC 69 (487)
Q Consensus 48 ~~~l~~~dv--lv~apTGsGKTl~ 69 (487)
+.+++|.++ +.-++||||||..
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEE
Confidence 446788775 4566999999975
No 313
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=66.67 E-value=3.8 Score=39.35 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=17.0
Q ss_pred HHHHHcCCCE--EEEcCCCchhhHH
Q 011387 47 IQAVLSGRDC--FCLMPTGGGKSMC 69 (487)
Q Consensus 47 i~~~l~~~dv--lv~apTGsGKTl~ 69 (487)
++.+++|.++ +.-++||||||..
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEe
Confidence 3445688875 4566999999975
No 314
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=66.62 E-value=3.5 Score=39.51 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=13.4
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
-+++.+|||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4678999999999754
No 315
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=66.32 E-value=46 Score=32.77 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=22.8
Q ss_pred CEEEEcCCCchhhHHHH-HhH-h-cCCCeEEEeC--cHHHHHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVVS--PLIALMENQ 94 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp~-l-~~~~~~lvl~--P~~~L~~q~ 94 (487)
-+.+.+++|+|||.... +.. + ..+++++++. +.+..+.++
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~q 144 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQ 144 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHH
Confidence 35677999999996543 222 2 2355666554 344444333
No 316
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=66.26 E-value=4 Score=38.97 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCE--EEEcCCCchhhHH
Q 011387 45 DAIQAVLSGRDC--FCLMPTGGGKSMC 69 (487)
Q Consensus 45 ~~i~~~l~~~dv--lv~apTGsGKTl~ 69 (487)
..+..+++|.++ +.-++||||||..
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 355667889875 4567999999975
No 317
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=66.25 E-value=3.7 Score=35.33 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=14.0
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
+-+.+.+|+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45678999999999754
No 318
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=66.19 E-value=3 Score=33.37 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=32.5
Q ss_pred CCceEEEEecccch--HHHHHHHHHhCCCceEEecCCCCH
Q 011387 257 GDTCAIVYCLERTT--CDELSAYLSAGGISCAAYHAGLND 294 (487)
Q Consensus 257 ~~~~~iIf~~s~~~--~~~l~~~L~~~g~~~~~~h~~l~~ 294 (487)
++.+++|||.+-.. +...+..|.+.|+.+..+.||+..
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 46789999999877 889999999999998888998743
No 319
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=66.17 E-value=2.8 Score=40.34 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
+.+++.||+|+|||....
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999998654
No 320
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=66.12 E-value=4.1 Score=37.21 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=18.8
Q ss_pred HcCCCEEEEcCCCchhhHHHHHh
Q 011387 51 LSGRDCFCLMPTGGGKSMCYQIP 73 (487)
Q Consensus 51 l~~~dvlv~apTGsGKTl~~~lp 73 (487)
+.|+.+++.+++|+|||....+-
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 34899999999999999876433
No 321
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=65.98 E-value=5.4 Score=36.73 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=32.6
Q ss_pred ChhHHHHHHHHHHcCCCCCcHHHHH-HHHHHHcCC-----CEEEEcCCCchhhHHHH
Q 011387 21 HEKEALVKLLRWHFGHAQFRDKQLD-AIQAVLSGR-----DCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 21 ~l~~~~~~~l~~~fg~~~~~~~Q~~-~i~~~l~~~-----dvlv~apTGsGKTl~~~ 71 (487)
+..+.+.+.|+-. |++ +.+-. ++..+++++ .+++.+|+|+|||+.+.
T Consensus 70 ~~~n~i~~~l~~q-g~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 70 ISSNRIYKILELN-GYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GGGCHHHHHHHHT-TCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred CchHHHHHHHHHc-CCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4566788888653 654 55544 456677654 47899999999998753
No 322
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=65.65 E-value=3.5 Score=35.23 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
+.-+++.+++|||||....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5568899999999997653
No 323
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=65.64 E-value=24 Score=26.98 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=39.9
Q ss_pred EEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcE
Q 011387 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (487)
Q Consensus 261 ~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~v 311 (487)
.+||...-+....+...++..|..+..+.++...+.|.+-++.|....++|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 356666666777888888888999999999999998888899887654443
No 324
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=65.48 E-value=4.2 Score=39.15 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=17.8
Q ss_pred HHHHHHcCCCE--EEEcCCCchhhHHH
Q 011387 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (487)
Q Consensus 46 ~i~~~l~~~dv--lv~apTGsGKTl~~ 70 (487)
.++.+++|.++ +.-++||||||..-
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 34456788775 45669999999753
No 325
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=65.44 E-value=3.8 Score=39.53 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=17.0
Q ss_pred HHHHHcCCCE--EEEcCCCchhhHH
Q 011387 47 IQAVLSGRDC--FCLMPTGGGKSMC 69 (487)
Q Consensus 47 i~~~l~~~dv--lv~apTGsGKTl~ 69 (487)
++.+++|.++ +.-++||||||..
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceee
Confidence 3445688775 5566999999976
No 326
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=65.42 E-value=4 Score=36.26 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=16.4
Q ss_pred HcCCCEEEEcCCCchhhHHH
Q 011387 51 LSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 51 l~~~dvlv~apTGsGKTl~~ 70 (487)
-.|+-+.+++|+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46788899999999999654
No 327
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=65.41 E-value=4 Score=38.34 Aligned_cols=68 Identities=12% Similarity=0.015 Sum_probs=47.9
Q ss_pred CceEEEEecccchHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc------c-cccccC
Q 011387 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------G-MGIDRK 325 (487)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~------~-~GiDip 325 (487)
+..+||.++|+.-+.++++.+... ++.+..++++.....+ .....+|+|+|..- . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 346999999999999998888763 4667777776543221 13556899999742 1 246777
Q ss_pred CCcEEEE
Q 011387 326 DVRLVCH 332 (487)
Q Consensus 326 ~v~~VI~ 332 (487)
+++++|.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 8888874
No 328
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=65.29 E-value=3.9 Score=39.54 Aligned_cols=24 Identities=33% Similarity=0.700 Sum_probs=17.4
Q ss_pred HHHHHHcCCCE--EEEcCCCchhhHH
Q 011387 46 AIQAVLSGRDC--FCLMPTGGGKSMC 69 (487)
Q Consensus 46 ~i~~~l~~~dv--lv~apTGsGKTl~ 69 (487)
.++.+++|.++ +.-++||||||..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 34456688875 4566999999975
No 329
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=65.10 E-value=10 Score=27.56 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=30.1
Q ss_pred CCCceEEEEecccchHHHHHHHHHhCCCc-eEEecCCCC
Q 011387 256 NGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (487)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (487)
.++.++++||.+-..+...+..|.+.|+. +..+ ||+.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 45678999999988899999999999985 5555 7754
No 330
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=65.00 E-value=4.3 Score=39.36 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=17.5
Q ss_pred HHHHHHcCCCE--EEEcCCCchhhHH
Q 011387 46 AIQAVLSGRDC--FCLMPTGGGKSMC 69 (487)
Q Consensus 46 ~i~~~l~~~dv--lv~apTGsGKTl~ 69 (487)
.++.+++|.++ +.-+.||||||..
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 34456788875 4566999999965
No 331
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=64.82 E-value=4.4 Score=39.88 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=18.9
Q ss_pred HHHHHHcCCCE--EEEcCCCchhhHHH
Q 011387 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (487)
Q Consensus 46 ~i~~~l~~~dv--lv~apTGsGKTl~~ 70 (487)
.++.+++|.++ +.-++||||||..-
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 45667789876 45669999999764
No 332
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=64.64 E-value=5.1 Score=34.52 Aligned_cols=31 Identities=16% Similarity=-0.001 Sum_probs=21.5
Q ss_pred EEEEcCCCchhhHHHHHhHhcCCCeEEEeCcH
Q 011387 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87 (487)
Q Consensus 56 vlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~ 87 (487)
++|.+++|||||.-+.--+.. +..++++..-
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 689999999999765433333 5566776653
No 333
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.63 E-value=2.2 Score=38.55 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=48.0
Q ss_pred CCceEEEEecccchHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-----ccc---cccc
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM---GIDR 324 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~-----~~~---GiDi 324 (487)
.+.++||.++++.-+.++++.+.+. ++.+..++++.....+ ......+..+|+|+|.- +.. ++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3457999999999999999988774 6666666665322111 11223466789999952 111 4677
Q ss_pred CCCcEEEE
Q 011387 325 KDVRLVCH 332 (487)
Q Consensus 325 p~v~~VI~ 332 (487)
.++++||.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 77887774
No 334
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=64.62 E-value=4 Score=39.39 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=16.5
Q ss_pred HHHHcCCCE--EEEcCCCchhhHH
Q 011387 48 QAVLSGRDC--FCLMPTGGGKSMC 69 (487)
Q Consensus 48 ~~~l~~~dv--lv~apTGsGKTl~ 69 (487)
+.+++|.++ +.-++||||||..
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceE
Confidence 345688775 5567999999975
No 335
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=64.56 E-value=7.6 Score=31.95 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=31.5
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCC-ceEEecCCCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 293 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~-~~~~~h~~l~ 293 (487)
++.+++|||.+-..+...+..|.+.|+ ++..+.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 467899999998889999999999998 5889999984
No 336
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=64.45 E-value=3.6 Score=34.43 Aligned_cols=17 Identities=18% Similarity=-0.214 Sum_probs=14.0
Q ss_pred CEEEEcCCCchhhHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (487)
-+++.|+.|+|||....
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999998653
No 337
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=64.43 E-value=34 Score=34.74 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=22.7
Q ss_pred cCCCEEEEcCCCchhhHHHH-HhHh--cCCCeEEEeCcH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVSPL 87 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~-lp~l--~~~~~~lvl~P~ 87 (487)
.|.-+++.+|+|+|||.... +..+ ..+.+++++++.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 34667899999999996433 2211 235567777653
No 338
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=64.13 E-value=3.1 Score=35.19 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=13.8
Q ss_pred CEEEEcCCCchhhHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (487)
-+++.+++|||||....
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 36789999999997653
No 339
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=64.02 E-value=4.2 Score=40.02 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=17.6
Q ss_pred HHHHHHcCCCE--EEEcCCCchhhHH
Q 011387 46 AIQAVLSGRDC--FCLMPTGGGKSMC 69 (487)
Q Consensus 46 ~i~~~l~~~dv--lv~apTGsGKTl~ 69 (487)
.++.+++|.++ +.-+.||||||..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeE
Confidence 34456788775 4566999999976
No 340
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=64.01 E-value=8.2 Score=29.69 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=32.8
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCCc-eEEecCCCCH
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~ 294 (487)
++.+++|||.+-..+...+..|.+.|+. +..+.||+..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 5678999999988899999999999985 8889998754
No 341
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=63.77 E-value=18 Score=35.67 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=51.7
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCc
Q 011387 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (487)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (487)
...+||+++++.-+....+.|...|..+..++++....++.........+. .+++++|.
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT~ 358 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGS--MKVLIATS 358 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSS--CSEEEECG
T ss_pred CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCC--CcEEEEch
Confidence 345999999999999999999999999999999999999988888888775 67777775
No 342
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=63.66 E-value=4.7 Score=39.77 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=19.1
Q ss_pred HHHHHHcCCCE--EEEcCCCchhhHHH
Q 011387 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (487)
Q Consensus 46 ~i~~~l~~~dv--lv~apTGsGKTl~~ 70 (487)
.++.+++|.++ +.-++||||||..-
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 56677889876 45569999999763
No 343
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=63.66 E-value=4.3 Score=39.50 Aligned_cols=22 Identities=41% Similarity=0.754 Sum_probs=16.5
Q ss_pred HHHHcCCCE--EEEcCCCchhhHH
Q 011387 48 QAVLSGRDC--FCLMPTGGGKSMC 69 (487)
Q Consensus 48 ~~~l~~~dv--lv~apTGsGKTl~ 69 (487)
+.+++|.++ +.-+.||||||..
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHhCCceEEEEeecCCCCCccee
Confidence 445678775 4566999999975
No 344
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=63.60 E-value=4.7 Score=31.10 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=32.2
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCCc-eEEecCCCCH
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~ 294 (487)
.+.+++|||.+-..+...+..|...|+. +..+.||+..
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 4568999999988899999999999985 8888888643
No 345
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=63.57 E-value=4.4 Score=39.54 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=17.6
Q ss_pred HHHHHHcCCCE--EEEcCCCchhhHH
Q 011387 46 AIQAVLSGRDC--FCLMPTGGGKSMC 69 (487)
Q Consensus 46 ~i~~~l~~~dv--lv~apTGsGKTl~ 69 (487)
.++.+++|.++ +.-+.||||||..
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyT 151 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHT 151 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeE
Confidence 34456788765 5566999999976
No 346
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=63.19 E-value=19 Score=38.67 Aligned_cols=68 Identities=9% Similarity=0.043 Sum_probs=48.8
Q ss_pred hHHHHHHHHH-HhCCCceEEEEecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 011387 244 DAYADLCSVL-KANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (487)
Q Consensus 244 ~~~~~l~~~l-~~~~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~ 317 (487)
+.+..++..+ ....+..++|.++|+.-|.+.++.+.. .|+.+..+.||++.+.|.... ..+|+|+|+.
T Consensus 100 KTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 100 KTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 3344443333 233456799999999999888877654 589999999999987655433 3789999974
No 347
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=63.19 E-value=4.3 Score=35.33 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~ 71 (487)
.|+-+++.+|.|+|||...-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678899999999997653
No 348
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=63.19 E-value=5.4 Score=32.80 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=32.4
Q ss_pred CCceEEEEeccc--chHHHHHHHHHhCCCceEEecCCCC
Q 011387 257 GDTCAIVYCLER--TTCDELSAYLSAGGISCAAYHAGLN 293 (487)
Q Consensus 257 ~~~~~iIf~~s~--~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (487)
++.+++|||.+- ..+...+..|...|+++..+.||+.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 456899999997 5789999999999999999999874
No 349
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=63.10 E-value=23 Score=38.17 Aligned_cols=71 Identities=4% Similarity=0.048 Sum_probs=52.9
Q ss_pred CCCceEEEEecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-c-----c------
Q 011387 256 NGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-F-----G------ 319 (487)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~-~-----~------ 319 (487)
..+..++|.++|+.-|.+.++.+.. .|+.+..+.||++.++|.... ..+|+++|+- + .
T Consensus 122 L~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~ 195 (844)
T 1tf5_A 122 LTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLY 195 (844)
T ss_dssp TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcc
Confidence 3566799999999999888877754 689999999999987765542 2689999972 2 1
Q ss_pred -cccccCCCcEEEE
Q 011387 320 -MGIDRKDVRLVCH 332 (487)
Q Consensus 320 -~GiDip~v~~VI~ 332 (487)
..++...+.++|.
T Consensus 196 ~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 196 KEQMVQRPLHFAVI 209 (844)
T ss_dssp GGGCCCCCCCEEEE
T ss_pred hhhhcccCCCEEEE
Confidence 1255667777774
No 350
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=63.10 E-value=3 Score=40.32 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=14.6
Q ss_pred cCCCEEEEcCCCchhhHH
Q 011387 52 SGRDCFCLMPTGGGKSMC 69 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~ 69 (487)
.+.-+++.+|||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 344678999999999965
No 351
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=63.01 E-value=3.8 Score=36.13 Aligned_cols=72 Identities=10% Similarity=0.139 Sum_probs=47.5
Q ss_pred CCceEEEEecccchHHHHHHHHHhC--------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-----ccc-cc
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM-GI 322 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~--------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~-----~~~-Gi 322 (487)
.+.++||.++++.-+.++++.+.+. +..+..++|+.+..+..+ . ..+..+|+|+|.. +.. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~-~~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---K-LNVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---C-CSSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---H-cCCCCCEEEeCHHHHHHHHHcCCC
Confidence 3467999999999999988877653 677888899875443211 1 1245789999952 222 24
Q ss_pred ccCCCcEEEE
Q 011387 323 DRKDVRLVCH 332 (487)
Q Consensus 323 Dip~v~~VI~ 332 (487)
+..++++||.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 4556666553
No 352
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=62.99 E-value=4.1 Score=38.33 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
..+++.+|+|+|||....
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 689999999999997653
No 353
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=62.99 E-value=44 Score=24.78 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=73.5
Q ss_pred EEEEecCCChHHHHHHHHHhcCCCCeEEecCCCCCcceEEEEeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHH
Q 011387 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (487)
Q Consensus 196 ~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~ 275 (487)
++.+-.|...+....+.+.. .|.-|+++.....+..-..+..+-....-.+++|..+.+.-...+-
T Consensus 3 ililintnndelikkikkev--------------enqgyqvrdvndsdelkkemkklaeeknfekiliisndkqllkeml 68 (134)
T 2lci_A 3 ILILINTNNDELIKKIKKEV--------------ENQGYQVRDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEML 68 (134)
T ss_dssp CEEEEECSCHHHHHHHHHHT--------------TTTTCEEEEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHH
T ss_pred EEEEEcCCcHHHHHHHHHHH--------------HccCeeeeecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHH
Confidence 45566676666666555432 3555666666544444444555555556678999999999898999
Q ss_pred HHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 011387 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (487)
Q Consensus 276 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~ 316 (487)
+.+++.|+.+..+--+.+..+-++.-....+..+.|--.|+
T Consensus 69 elisklgykvflllqdqdeneleefkrkiesqgyevrkvtd 109 (134)
T 2lci_A 69 ELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVTD 109 (134)
T ss_dssp HHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecCC
Confidence 99999999999998888887766666666555555555554
No 354
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=62.90 E-value=3.1 Score=35.55 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=16.4
Q ss_pred cCCCEEEEcCCCchhhHHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~l 72 (487)
.|..+++.++.|||||.....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345688999999999986543
No 355
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=62.78 E-value=3.3 Score=40.30 Aligned_cols=19 Identities=32% Similarity=0.265 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|..+++++|||||||...
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999653
No 356
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=62.70 E-value=3 Score=35.41 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchhhHHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~l 72 (487)
.|.-+.+++|.|||||..+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 345578999999999976543
No 357
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=62.57 E-value=3 Score=35.34 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
|+-+++.+|.|||||...-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4567899999999997653
No 358
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=62.43 E-value=4.3 Score=39.41 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=18.4
Q ss_pred HHHHHHcCCCEE--EEcCCCchhhHH
Q 011387 46 AIQAVLSGRDCF--CLMPTGGGKSMC 69 (487)
Q Consensus 46 ~i~~~l~~~dvl--v~apTGsGKTl~ 69 (487)
.++.+++|.++. .-++||||||..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 456678898754 556999999976
No 359
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=62.41 E-value=4.5 Score=35.47 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=16.5
Q ss_pred HHHcCCCEEEEcCCCchhhHHH
Q 011387 49 AVLSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 49 ~~l~~~dvlv~apTGsGKTl~~ 70 (487)
.+..|+-+.+.+|+|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567788889999999999754
No 360
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=62.36 E-value=9.6 Score=46.72 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHcCCCCCcHHH-HHHH---HHHHcCCCEEEEcCCCchhhHHHHHh
Q 011387 22 EKEALVKLLRWHFGHAQFRDKQ-LDAI---QAVLSGRDCFCLMPTGGGKSMCYQIP 73 (487)
Q Consensus 22 l~~~~~~~l~~~fg~~~~~~~Q-~~~i---~~~l~~~dvlv~apTGsGKTl~~~lp 73 (487)
+.+.+.+.+++ .|+. +.+.+ .+++ +.+..++.++++||||+|||.++..-
T Consensus 890 l~~~i~~~~~~-~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~L 943 (2695)
T 4akg_A 890 IVQCLKDAGQR-SGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTV 943 (2695)
T ss_dssp HHHHHHHHHHH-HTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHH
Confidence 44455566665 4765 45544 3333 33445678999999999999987643
No 361
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=62.30 E-value=28 Score=36.54 Aligned_cols=82 Identities=29% Similarity=0.239 Sum_probs=64.4
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhc
Q 011387 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (487)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~ 156 (487)
.+.++||+++++.-++...+.|...|+.+..+++......+..+......+. .+++++|... ..| .+.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~--~~VLVaT~~l--~~G--------lDi 511 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGK--YDVLVGINLL--REG--------LDI 511 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTS--CSEEEESCCC--STT--------CCC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCC--eEEEEecchh--hCC--------ccc
Confidence 4779999999999999999999999999999999988888888888777765 7787777532 222 233
Q ss_pred CCccEEEEeccccc
Q 011387 157 GLLNLVAIDEAHCI 170 (487)
Q Consensus 157 ~~l~~lViDEah~~ 170 (487)
..++++|+-|++..
T Consensus 512 p~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 512 PEVSLVAILDADKE 525 (661)
T ss_dssp TTEEEEEETTTTCC
T ss_pred CCCCEEEEeCcccc
Confidence 45778888887653
No 362
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=62.21 E-value=5.2 Score=36.49 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
.+.+++.+|+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356899999999999865
No 363
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=62.17 E-value=6.3 Score=33.71 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=14.3
Q ss_pred CEEEEcCCCchhhHHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (487)
-+++.+|+|+|||...-.
T Consensus 4 ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 467899999999986543
No 364
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=66.07 E-value=1.6 Score=37.03 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=45.6
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeC
Q 011387 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (487)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~t 137 (487)
++++||+++++.-+....+.|+..++.+..++++.....+.........+. .+++++|
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~--~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR--VNVLVAT 87 (170)
Confidence 467899999999999999999988888888998887777776666666554 5565555
No 365
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=61.83 E-value=1.1e+02 Score=30.17 Aligned_cols=40 Identities=28% Similarity=0.174 Sum_probs=23.0
Q ss_pred CEEEEcCCCchhhHHHH-Hh-Hh-cC-CCeEEEeC--cHHHHHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQ-IP-AL-AK-PGIVLVVS--PLIALMENQ 94 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp-~l-~~-~~~~lvl~--P~~~L~~q~ 94 (487)
.+++++++|+|||.... +. .+ .. +.+++++. |.+..+.++
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~q 147 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQ 147 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHH
Confidence 46677999999996543 22 22 23 55666654 444433333
No 366
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=61.82 E-value=10 Score=47.16 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHcCCCCCcHH-HHHHHHH---HHcCCCEEEEcCCCchhhHHHHHh--HhcC----CCeEEEeCc
Q 011387 22 EKEALVKLLRWHFGHAQFRDK-QLDAIQA---VLSGRDCFCLMPTGGGKSMCYQIP--ALAK----PGIVLVVSP 86 (487)
Q Consensus 22 l~~~~~~~l~~~fg~~~~~~~-Q~~~i~~---~l~~~dvlv~apTGsGKTl~~~lp--~l~~----~~~~lvl~P 86 (487)
+.+.+.+.+++ .|+. +.+. -.++++. +.-.+.++++||||+|||.|+-.- ++.. .....++-|
T Consensus 873 l~~ai~~~~~~-~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNP 945 (3245)
T 3vkg_A 873 LRKKIQEIAKQ-RHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDP 945 (3245)
T ss_dssp HHHHHHHHHHH-TTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECT
T ss_pred HHHHHHHHHHH-cCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECC
Confidence 44555566655 4764 4554 3445432 334567899999999999998532 3332 223455666
No 367
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=61.39 E-value=30 Score=36.37 Aligned_cols=81 Identities=23% Similarity=0.205 Sum_probs=63.3
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhc
Q 011387 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (487)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~ 156 (487)
.+.++||+++++.-+....+.|...|+.+..++++.....+..+......+. ++++++|... ..| .+.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~--~~VLvaT~~l--~~G--------lDi 505 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGH--YDCLVGINLL--REG--------LDI 505 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTS--CSEEEESCCC--CTT--------CCC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCC--ceEEEccChh--hcC--------ccC
Confidence 5789999999999999999999999999999999988888888888887765 7787777432 222 233
Q ss_pred CCccEEEEecccc
Q 011387 157 GLLNLVAIDEAHC 169 (487)
Q Consensus 157 ~~l~~lViDEah~ 169 (487)
..++++|+=+++.
T Consensus 506 p~v~lVI~~d~d~ 518 (664)
T 1c4o_A 506 PEVSLVAILDADK 518 (664)
T ss_dssp TTEEEEEETTTTS
T ss_pred CCCCEEEEeCCcc
Confidence 4567777777654
No 368
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=61.29 E-value=3.8 Score=40.22 Aligned_cols=15 Identities=33% Similarity=0.151 Sum_probs=12.6
Q ss_pred EEEEcCCCchhhHHH
Q 011387 56 CFCLMPTGGGKSMCY 70 (487)
Q Consensus 56 vlv~apTGsGKTl~~ 70 (487)
++|.||||+|||...
T Consensus 5 i~i~GptgsGKttla 19 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEECcchhhHHHHH
Confidence 578899999999754
No 369
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=61.10 E-value=10 Score=44.24 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=59.3
Q ss_pred HHHHHHc------CCCEEEEcCCCchhhHHHHH---hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHH
Q 011387 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (487)
Q Consensus 46 ~i~~~l~------~~dvlv~apTGsGKTl~~~l---p~l~~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~ 116 (487)
.++.++. |+-+.+.+|.|||||...+- .+...++.++++.+--+|-... ++++|+...
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~~---------- 1484 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID---------- 1484 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGG----------
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCHH----------
Confidence 4566665 35688999999999976542 2334588888888866664432 455554321
Q ss_pred HHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccccccc
Q 011387 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (487)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah~~~~ 172 (487)
++++.-|+.- ...+.........+.+++||||..-.+..
T Consensus 1485 ---------------~l~~~~p~~~--e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 ---------------NLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ---------------GCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ---------------HeEEeCCCcH--HHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 1333333211 12333445556667799999999988754
No 370
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=61.03 E-value=6.4 Score=32.04 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=33.1
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCC-ceEEecCCCCH
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLND 294 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~-~~~~~h~~l~~ 294 (487)
++.+++|||.+-..+...+..|.+.|+ ++..+.||+..
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 567899999999899999999999998 58899999743
No 371
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=60.87 E-value=94 Score=27.90 Aligned_cols=186 Identities=12% Similarity=0.120 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCccccc----ChhhHHHHHhhhhcCCccEEE
Q 011387 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA----TPGFMSKLKKIHSRGLLNLVA 163 (487)
Q Consensus 88 ~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~----t~~~~~~l~~~~~~~~l~~lV 163 (487)
..+.....+.+.+.|.....................+.... ++-++..|.... ....+..+ ....+-+++
T Consensus 31 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~~~----~~~~iPvV~ 104 (298)
T 3tb6_A 31 PSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQH--IDGLIVEPTKSALQTPNIGYYLNL----EKNGIPFAM 104 (298)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTC--CSEEEECCSSTTSCCTTHHHHHHH----HHTTCCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCC--CCEEEEecccccccCCcHHHHHHH----HhcCCCEEE
Confidence 34555556667778887777666555544444445444443 455554443211 11222222 223567788
Q ss_pred Eecccc---ccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHHHHHHHHHhc-CCCCeEEecCCC-CCcceEEEEe
Q 011387 164 IDEAHC---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC-LQNPLVLKSSFN-RPNLFYEVRY 238 (487)
Q Consensus 164 iDEah~---~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~-~~~~~~~~~~~~-~~~~~~~v~~ 238 (487)
+|.... +...+.|.......+...........+.+++.............+.. +.. .... ..........
T Consensus 105 ~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~-----~g~~~~~~~~~~~~~ 179 (298)
T 3tb6_A 105 INASYAELAAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRE-----RELFPSPDMIVTFTT 179 (298)
T ss_dssp ESSCCTTCSSCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHH-----TTCCCCGGGEEEECH
T ss_pred EecCcCCCCCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHH-----cCCCCCcceEEEecc
Confidence 774321 11112223333333333333345667777776554332222211110 000 0000 1111111111
Q ss_pred eCchhhHHHHHHHHHHhCCCc-eEEEEecccchHHHHHHHHHhCCCc
Q 011387 239 KDLLDDAYADLCSVLKANGDT-CAIVYCLERTTCDELSAYLSAGGIS 284 (487)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~-~~iIf~~s~~~~~~l~~~L~~~g~~ 284 (487)
..........+.++++..+.. +.-|||.+-..+..+.+.|++.|+.
T Consensus 180 ~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 180 EEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp HHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred cchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 111111256677777776542 6678898888888888999887754
No 372
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=60.80 E-value=4.4 Score=40.60 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
+.+++.+|+|+|||...
T Consensus 64 ~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 57999999999999865
No 373
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=60.56 E-value=8.3 Score=29.85 Aligned_cols=38 Identities=8% Similarity=0.082 Sum_probs=32.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHhCCCceEEecCCCC
Q 011387 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (487)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (487)
.++.+++|||.+-..+...+..|.+.|+....+.||+.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 45678999999988899999999999986678889875
No 374
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=60.50 E-value=5.7 Score=39.56 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=16.5
Q ss_pred HHHHcCCCE--EEEcCCCchhhHH
Q 011387 48 QAVLSGRDC--FCLMPTGGGKSMC 69 (487)
Q Consensus 48 ~~~l~~~dv--lv~apTGsGKTl~ 69 (487)
+.+++|.++ |.-+.||||||..
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHhhcCCceEEEEeCCCCCCCCEE
Confidence 445688775 5566999999975
No 375
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=60.47 E-value=3.9 Score=39.40 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=18.0
Q ss_pred HHHHHHcCCCE--EEEcCCCchhhHHH
Q 011387 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (487)
Q Consensus 46 ~i~~~l~~~dv--lv~apTGsGKTl~~ 70 (487)
.++.+++|.++ +.-++||||||..-
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 34455688775 45669999999764
No 376
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=60.28 E-value=4.2 Score=36.27 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=16.2
Q ss_pred HHcCCCEEEEcCCCchhhHHH
Q 011387 50 VLSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 50 ~l~~~dvlv~apTGsGKTl~~ 70 (487)
+-.|+-+.+++|.|+|||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 346777889999999999754
No 377
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=59.91 E-value=5.2 Score=38.06 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
..++++.||+|+|||....
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999997653
No 378
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=59.66 E-value=22 Score=36.60 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=51.7
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHc---CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCc
Q 011387 77 KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (487)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (487)
.+.++||+++++.-+....+.|+.. ++.+..+++......+..+......+. .+++++|.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~--~~vLVaT~ 349 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTD 349 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECG
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCC--CeEEEEcc
Confidence 3678999999999999999999886 889999999999999888888888776 77777765
No 379
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=59.61 E-value=5.6 Score=33.58 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (487)
+.+++.++.|||||.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 3688999999999987643
No 380
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=59.36 E-value=4.4 Score=33.61 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.0
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
-.++.+|+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3578999999999753
No 381
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=59.28 E-value=22 Score=36.28 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=51.8
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHc---CCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCc
Q 011387 77 KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (487)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (487)
.+.++||+++++.-+....+.|+.. ++.+..++++.....+..+......+. .+++++|.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~--~~vLvaT~ 400 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTD 400 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECG
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCC--CCEEEEcc
Confidence 3679999999999999999999886 889999999999999988888888776 77777775
No 382
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=59.10 E-value=5.4 Score=33.42 Aligned_cols=21 Identities=24% Similarity=0.097 Sum_probs=16.8
Q ss_pred CCEEEEcCCCchhhHHHHHhH
Q 011387 54 RDCFCLMPTGGGKSMCYQIPA 74 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~ 74 (487)
+++++.++.|||||.+...-+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578899999999998765433
No 383
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=58.90 E-value=4.6 Score=39.40 Aligned_cols=30 Identities=33% Similarity=0.568 Sum_probs=21.4
Q ss_pred cHHHHHHHH--------HHHcCCCE--EEEcCCCchhhHH
Q 011387 40 RDKQLDAIQ--------AVLSGRDC--FCLMPTGGGKSMC 69 (487)
Q Consensus 40 ~~~Q~~~i~--------~~l~~~dv--lv~apTGsGKTl~ 69 (487)
..-|.+++. .+++|.++ +.-++||||||..
T Consensus 76 ~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 76 RSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp TCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHH
T ss_pred CCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeE
Confidence 346777765 35678775 4567999999975
No 384
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=58.83 E-value=16 Score=34.93 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=51.9
Q ss_pred CCceEEEEecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc------ccccccCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 326 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~------~~GiDip~ 326 (487)
.+.++||.++++.-+.++++.+.+ .++.+..++|+.+..+....+. ..+|+|+|... ...++..+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999999999998888765 3678899999998766554443 46799999532 12345567
Q ss_pred CcEEEE
Q 011387 327 VRLVCH 332 (487)
Q Consensus 327 v~~VI~ 332 (487)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777774
No 385
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=58.57 E-value=6.1 Score=31.71 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=32.8
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCCc-eEEecCCCCH
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~ 294 (487)
++.+++|||.+-..+...+..|.+.|+. +..+.||+..
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 5678999999988899999999999985 8889999753
No 386
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=58.46 E-value=4.8 Score=34.98 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|.-+.+.+|.|+|||...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3566788999999999765
No 387
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=58.20 E-value=4.3 Score=39.02 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=16.6
Q ss_pred HHHHcCCCE--EEEcCCCchhhHHH
Q 011387 48 QAVLSGRDC--FCLMPTGGGKSMCY 70 (487)
Q Consensus 48 ~~~l~~~dv--lv~apTGsGKTl~~ 70 (487)
+.+++|.++ +.-++||||||..-
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 78 QSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp GGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHhcCCceeEEEEECCCCCCCcEec
Confidence 334678775 45679999999764
No 388
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=58.08 E-value=4.9 Score=34.37 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
+.-+++.+++|||||....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457899999999998654
No 389
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=57.79 E-value=8.1 Score=38.45 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
.+++++.+|+|+|||....
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3689999999999998654
No 390
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=57.73 E-value=5.7 Score=37.83 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
..+++.+|+|+|||...
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57899999999999765
No 391
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=57.71 E-value=7.4 Score=34.53 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~l 72 (487)
+..+++.|++|||||.....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~ 26 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSR 26 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688999999999986543
No 392
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=57.47 E-value=4.3 Score=36.24 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=11.5
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|+-+.+.+|+|+|||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566789999999999654
No 393
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=57.27 E-value=8.1 Score=35.53 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=28.8
Q ss_pred cccCCCCChhHHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCCEEEEcCCCchhhHHHH
Q 011387 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~~~~Q~~~i~~~l--~~~dvlv~apTGsGKTl~~~ 71 (487)
...|.++...++....+++..-. + ....++..+- -.+.+++.+|+|+|||....
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~--~--~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEF--L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHH--H--HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHH--H--HCHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 34455565666666666543100 0 0112222221 12458999999999997653
No 394
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=57.24 E-value=5.7 Score=34.47 Aligned_cols=17 Identities=24% Similarity=0.220 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
+-+++.|+.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999865
No 395
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=56.96 E-value=7.3 Score=34.15 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=14.7
Q ss_pred CEEEEcCCCchhhHHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (487)
.+++.+|.|||||.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999987644
No 396
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=56.71 E-value=6 Score=34.95 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
..+.+.+|+|||||...-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999998654
No 397
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=56.65 E-value=6 Score=33.92 Aligned_cols=21 Identities=19% Similarity=0.185 Sum_probs=16.7
Q ss_pred cCCCEEEEcCCCchhhHHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~l 72 (487)
.+.-+++.+++|||||.....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456788999999999986543
No 398
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=56.59 E-value=4.7 Score=39.09 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.4
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
-.++++|+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999654
No 399
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=56.58 E-value=5.4 Score=38.80 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=19.7
Q ss_pred HHHHHHHH-------HHHcCCCE--EEEcCCCchhhHH
Q 011387 41 DKQLDAIQ-------AVLSGRDC--FCLMPTGGGKSMC 69 (487)
Q Consensus 41 ~~Q~~~i~-------~~l~~~dv--lv~apTGsGKTl~ 69 (487)
.-|.+++. .+++|.++ +.-+.||||||..
T Consensus 95 ~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 95 SGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp CCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred ccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceE
Confidence 35655553 34578775 4566999999975
No 400
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=56.29 E-value=15 Score=31.15 Aligned_cols=15 Identities=13% Similarity=-0.064 Sum_probs=12.1
Q ss_pred CEEEEcCCCchhhHH
Q 011387 55 DCFCLMPTGGGKSMC 69 (487)
Q Consensus 55 dvlv~apTGsGKTl~ 69 (487)
-+.+.++.|+|||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 356888999999963
No 401
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=56.01 E-value=7.5 Score=31.52 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=32.2
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCCc-eEEecCCCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (487)
++.++++||.+-..+...+..|.+.|+. +..+.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4678999999988899999999999985 888899874
No 402
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=55.99 E-value=7.4 Score=33.07 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (487)
..+++.+++|||||.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3578999999999987643
No 403
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=55.83 E-value=6.2 Score=34.58 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=14.6
Q ss_pred CEEEEcCCCchhhHHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (487)
.+++.||.|||||.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999987543
No 404
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=55.50 E-value=7.4 Score=32.56 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (487)
+.+++.++.|||||.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3578999999999987543
No 405
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=55.38 E-value=5.6 Score=34.86 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
|.-+.+.+|+|||||...
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445678999999999643
No 406
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=55.29 E-value=4.9 Score=34.39 Aligned_cols=18 Identities=17% Similarity=-0.018 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
.-+++.++.|||||....
T Consensus 6 ~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999998653
No 407
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=55.19 E-value=10 Score=39.47 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=19.9
Q ss_pred HHHHcCCCEEEEcCCCchhhHHHH
Q 011387 48 QAVLSGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 48 ~~~l~~~dvlv~apTGsGKTl~~~ 71 (487)
..+..++.+++.+|+|+|||..+.
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHH
Confidence 345578999999999999997664
No 408
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=55.09 E-value=5.1 Score=34.06 Aligned_cols=16 Identities=25% Similarity=0.052 Sum_probs=13.3
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
-.++++|+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4578999999999764
No 409
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=54.98 E-value=6.7 Score=31.78 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=32.2
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCCc-eEEecCCCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (487)
.+.+++|||.+-..+...+..|.+.|+. +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4678999999988888999999999985 889999874
No 410
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=54.89 E-value=13 Score=35.97 Aligned_cols=59 Identities=10% Similarity=0.097 Sum_probs=46.1
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCc
Q 011387 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (487)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (487)
.+++||+++++.-+....+.|...++.+..+++......+..+......+. .+++++|.
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 338 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS--SRVLITTD 338 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC-----CEEECS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCC--CcEEEECC
Confidence 568999999999999999999999999999999998888888888887765 66777765
No 411
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=54.89 E-value=6.9 Score=39.31 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
..++++.+|+|+|||...
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 358999999999999765
No 412
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=54.66 E-value=1.2e+02 Score=27.25 Aligned_cols=177 Identities=10% Similarity=0.033 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEeccc
Q 011387 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (487)
Q Consensus 89 ~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEah 168 (487)
.++....+.+.+.|.....................+.... ++-++..+... ... ..+......+-++++|...
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~-~~~----~~~~~~~~~iPvV~~~~~~ 97 (291)
T 3egc_A 25 EVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERR--VDGLILAPSEG-EHD----YLRTELPKTFPIVAVNREL 97 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCCSS-CCH----HHHHSSCTTSCEEEESSCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCC--CCEEEEeCCCC-ChH----HHHHhhccCCCEEEEeccc
Confidence 4455555666777887777666555554444445554443 44444444322 222 2222233457778887543
Q ss_pred c---ccccCCCChHHHHHHHHHHHhCCCCcEEEEecCCChHH-HHHH------HHHhcCCCCeEEecCCCCCcceEEEEe
Q 011387 169 C---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV-QKDV------MESLCLQNPLVLKSSFNRPNLFYEVRY 238 (487)
Q Consensus 169 ~---~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~-~~~i------~~~l~~~~~~~~~~~~~~~~~~~~v~~ 238 (487)
. +...+.|.......+...........+.+++....... .... .+..++... +.......
T Consensus 98 ~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---------~~~~~~~~- 167 (291)
T 3egc_A 98 RIPGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVR---------QEWIAAGG- 167 (291)
T ss_dssp CCTTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCC---------GGGEEC---
T ss_pred CCCCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCC---------HHHeEeCC-
Confidence 2 11112233333333333333446677888877654221 1111 111121110 11110000
Q ss_pred eCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCc
Q 011387 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (487)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~ 284 (487)
...+.....+.+++... ..+.-|||.+-..+..+.+.|++.|+.
T Consensus 168 -~~~~~~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 168 -VRADNGRDGAIKVLTGA-DRPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp -----CCHHHHHHHHTC--CCCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred -CChhHHHHHHHHHHhCC-CCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 01123344555666543 345678888888888888888887654
No 413
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=54.64 E-value=32 Score=37.26 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=52.9
Q ss_pred hCCCceEEEEecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-cc-----c----
Q 011387 255 ANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FG-----M---- 320 (487)
Q Consensus 255 ~~~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~-~~-----~---- 320 (487)
...+..++|.++|+.-|.+.++.+.. .|+.+..+.|+++.++|.... ..+|+++|+. ++ .
T Consensus 149 aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~ 222 (922)
T 1nkt_A 149 ALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAH 222 (922)
T ss_dssp HTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhc
Confidence 34566799999999999888877654 699999999999987765543 2689999973 21 1
Q ss_pred ---ccccCCCcEEEE
Q 011387 321 ---GIDRKDVRLVCH 332 (487)
Q Consensus 321 ---GiDip~v~~VI~ 332 (487)
.++...+.++|.
T Consensus 223 ~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 223 SLDDLVQRGHHYAIV 237 (922)
T ss_dssp SGGGCCCCCCCEEEE
T ss_pred cHhhhccCCCCEEEE
Confidence 345566777663
No 414
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=54.60 E-value=10 Score=34.52 Aligned_cols=18 Identities=22% Similarity=-0.012 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
.-+++.|++|||||....
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 457899999999997653
No 415
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=54.51 E-value=7.1 Score=33.43 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=13.3
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
.+.+.+|.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999754
No 416
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=54.06 E-value=59 Score=24.84 Aligned_cols=56 Identities=5% Similarity=-0.056 Sum_probs=38.4
Q ss_pred CceEEEEecc------cchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 011387 258 DTCAIVYCLE------RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (487)
Q Consensus 258 ~~~~iIf~~s------~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLV 313 (487)
..+++||..+ ...|..+.+.|.+.|+....+.-...++.+..+.+......+..++
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~if 78 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLY 78 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEE
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 4579999884 8889999999999998877666555555555554433333444444
No 417
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=53.75 E-value=7.7 Score=34.17 Aligned_cols=19 Identities=21% Similarity=0.252 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
+..+++.+++|||||....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999997654
No 418
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=53.72 E-value=8.1 Score=37.32 Aligned_cols=19 Identities=37% Similarity=0.660 Sum_probs=14.9
Q ss_pred cCCC--EEEEcCCCchhhHHH
Q 011387 52 SGRD--CFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~d--vlv~apTGsGKTl~~ 70 (487)
.|.+ ++.-++||||||..-
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 477889999999763
No 419
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=53.61 E-value=8.3 Score=33.47 Aligned_cols=57 Identities=7% Similarity=-0.007 Sum_probs=35.8
Q ss_pred CCceEEEEecccchHHH-HHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 011387 257 GDTCAIVYCLERTTCDE-LSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~-l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~ 317 (487)
.+.++||.|+++..+++ +.+.+.+ .++.+..++|+.....+..... +..+|+|+|..
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 141 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQ 141 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHH
Confidence 36689999999988877 5555554 3678888888764332211111 24679999863
No 420
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=53.51 E-value=6 Score=34.54 Aligned_cols=18 Identities=17% Similarity=-0.201 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCchhhHHH
Q 011387 53 GRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~ 70 (487)
+.-+.+.+|+|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 345678999999999764
No 421
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=53.35 E-value=8.7 Score=33.26 Aligned_cols=42 Identities=12% Similarity=-0.001 Sum_probs=24.5
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCcEEEEecCC
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~~i~lSAT~ 203 (487)
...+++++||+..+..... .....+..+... ..++++-|+|.
T Consensus 104 ~~~dvlilDE~g~~~~~~~---~~~~~l~~~l~~--~~~~ilgti~v 145 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQ---LFIQAVRQTLST--PGTIILGTIPV 145 (189)
T ss_dssp SCCCCEEECCCSTTTTTCS---HHHHHHHHHHHC--SSCCEEEECCC
T ss_pred cCCCEEEEeCCCccccccH---HHHHHHHHHHhC--CCcEEEEEeec
Confidence 4568999999876633221 223455555554 34566656665
No 422
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=53.30 E-value=11 Score=30.44 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=32.1
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCCc-eEEecCCCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (487)
++.+++|||.+-..+...+..|.+.|+. +..+.||+.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 4578999999988899999999999985 888889984
No 423
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=53.30 E-value=8 Score=33.37 Aligned_cols=20 Identities=15% Similarity=-0.039 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~ 71 (487)
.+.-+++.++.|||||...-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35668899999999998654
No 424
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=53.12 E-value=7.9 Score=34.16 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~l 72 (487)
...+++.+|+|||||.....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35688999999999986543
No 425
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=53.05 E-value=32 Score=37.39 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=49.8
Q ss_pred hHHHHHHHH-HHhCCCceEEEEecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Q 011387 244 DAYADLCSV-LKANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (487)
Q Consensus 244 ~~~~~l~~~-l~~~~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~ 317 (487)
+.+...+.. +....+..++|.++|+.-|.+.++.+.. .|+.+..+.|+++.++|.... ..+|+++|..
T Consensus 105 KTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 105 KTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp HHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 333333333 3334566799999999998888777654 699999999999987766654 3789999974
No 426
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=52.96 E-value=9.5 Score=32.69 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~ 71 (487)
.+.-+++.+++|||||....
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45668899999999997653
No 427
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=52.56 E-value=21 Score=30.71 Aligned_cols=53 Identities=9% Similarity=-0.034 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcC-CC-EEEEcCCCchhhHHH---HHhH-hcCCCeEEEeCcHHHHHHH
Q 011387 41 DKQLDAIQAVLSG-RD-CFCLMPTGGGKSMCY---QIPA-LAKPGIVLVVSPLIALMEN 93 (487)
Q Consensus 41 ~~Q~~~i~~~l~~-~d-vlv~apTGsGKTl~~---~lp~-l~~~~~~lvl~P~~~L~~q 93 (487)
+-|..++..++.. +. .+|.++-|++|+... ++.+ -..+..+.+++|+..-...
T Consensus 37 ~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 37 AGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHH
T ss_pred ccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHH
Confidence 5788999888644 33 467789999999763 2222 2347789999998766443
No 428
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=52.54 E-value=7.6 Score=33.75 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=13.9
Q ss_pred EEEEcCCCchhhHHHHH
Q 011387 56 CFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 56 vlv~apTGsGKTl~~~l 72 (487)
+.+.+|.|||||...-+
T Consensus 5 i~l~G~~GsGKST~~~~ 21 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANL 21 (206)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999986543
No 429
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=52.52 E-value=8 Score=35.11 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=16.4
Q ss_pred cCCCEEEEcCCCchhhHHHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~~l 72 (487)
.+.-+.+.+|+|||||...-+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345678999999999986543
No 430
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=52.42 E-value=18 Score=33.61 Aligned_cols=70 Identities=19% Similarity=0.117 Sum_probs=50.5
Q ss_pred CceEEEEecccchHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc-----c-cccccCCC
Q 011387 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----G-MGIDRKDV 327 (487)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~-----~-~GiDip~v 327 (487)
+.++||.++++.-++++++.+++ .+..+..++|+.+....... +. ..+|+|+|... . ..++..++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 46799999999999999998875 35788999999887654332 22 37899999632 1 22456667
Q ss_pred cEEEE
Q 011387 328 RLVCH 332 (487)
Q Consensus 328 ~~VI~ 332 (487)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77774
No 431
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=52.35 E-value=7.3 Score=33.17 Aligned_cols=17 Identities=24% Similarity=0.050 Sum_probs=13.8
Q ss_pred CEEEEcCCCchhhHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (487)
-+++.++.|+|||....
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999997653
No 432
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=52.27 E-value=7.2 Score=33.18 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.2
Q ss_pred CEEEEcCCCchhhHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (487)
-+++.+++|||||....
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999998654
No 433
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=52.03 E-value=6.3 Score=34.20 Aligned_cols=19 Identities=26% Similarity=0.013 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.+.-+++.++.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3456789999999999765
No 434
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=52.02 E-value=8 Score=34.05 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=13.2
Q ss_pred EEEEcCCCchhhHHHH
Q 011387 56 CFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 56 vlv~apTGsGKTl~~~ 71 (487)
+++.+|+||||+....
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999987543
No 435
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=52.00 E-value=5.6 Score=41.39 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=14.6
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999754
No 436
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=51.79 E-value=8.8 Score=36.44 Aligned_cols=19 Identities=11% Similarity=-0.012 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
+.-+++.+|+|+|||...+
T Consensus 123 gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp SEEEEEECSCSSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4557899999999996543
No 437
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=51.73 E-value=7.5 Score=32.91 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|.-+++.++.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556789999999999764
No 438
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=51.66 E-value=1.5e+02 Score=27.58 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=19.1
Q ss_pred CEEEEcCCCchhhHHHH-HhHh--cCCCeEEEe
Q 011387 55 DCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVV 84 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp~l--~~~~~~lvl 84 (487)
-+.+.+++|+|||.... +... ..+++++++
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 36788999999996543 2222 235666665
No 439
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=51.53 E-value=8.9 Score=33.14 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (487)
.-+++.+++|||||.....
T Consensus 21 ~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578899999999986543
No 440
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=51.37 E-value=82 Score=29.14 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=19.0
Q ss_pred CEEEEcCCCchhhHHHH-HhHh--cCCCeEEEeC
Q 011387 55 DCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp~l--~~~~~~lvl~ 85 (487)
-+.+.+++|+|||.... +... ..+++++++.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35678999999996543 2222 2355665554
No 441
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=51.33 E-value=10 Score=31.02 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=31.6
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCCc-eEEecCCCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (487)
.+.+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 4568999999988889999999999985 788888864
No 442
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=51.30 E-value=7 Score=35.17 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|.-+.+.+|.|+|||...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4667789999999999754
No 443
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=51.30 E-value=7.7 Score=33.58 Aligned_cols=18 Identities=28% Similarity=0.087 Sum_probs=14.7
Q ss_pred CEEEEcCCCchhhHHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (487)
.+.+.++.|||||...-.
T Consensus 3 ~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 467899999999987643
No 444
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=51.22 E-value=6 Score=38.36 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=13.0
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
=.++.+|||+|||...
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3578999999999753
No 445
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=51.11 E-value=11 Score=32.46 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.1
Q ss_pred CEEEEcCCCchhhHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (487)
-+++.++.|||||....
T Consensus 17 ~I~l~G~~GsGKsT~~~ 33 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCE 33 (203)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998653
No 446
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=50.97 E-value=8.5 Score=34.22 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=14.1
Q ss_pred CCEEEEcCCCchhhHHHH
Q 011387 54 RDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (487)
+-+++.+|+||||+....
T Consensus 30 kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp EEEEEECCTTCCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 456789999999987543
No 447
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=50.88 E-value=8.4 Score=39.13 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.+.+++|.++||||||.+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH
T ss_pred cCceEEEECCCCCCHHHHH
Confidence 3578999999999999764
No 448
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=50.71 E-value=7.1 Score=34.21 Aligned_cols=30 Identities=13% Similarity=0.017 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHcCCCEEEEcCCCchhhHHH
Q 011387 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 40 ~~~Q~~~i~~~l~~~dvlv~apTGsGKTl~~ 70 (487)
++.++.. ..+..|.-+++.++.|+|||...
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 3444444 22335667889999999999754
No 449
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=50.67 E-value=7.9 Score=33.69 Aligned_cols=19 Identities=16% Similarity=-0.192 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
+.-+.+.+++|||||....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4457789999999997653
No 450
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=50.48 E-value=1.5e+02 Score=27.24 Aligned_cols=178 Identities=11% Similarity=0.068 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhcCCccEEEEecc
Q 011387 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEA 167 (487)
Q Consensus 88 ~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~~~l~~lViDEa 167 (487)
..+.....+.+.+.|.....................+.... ++-++..|.... . ..+........+-++++|..
T Consensus 79 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~-~---~~~~~~~~~~~iPvV~~~~~ 152 (338)
T 3dbi_A 79 SELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLR--CDAIMIYPRFLS-V---DEIDDIIDAHSQPIMVLNRR 152 (338)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTT--CSEEEECCSSSC-H---HHHHHHHHHCSSCEEEESSC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCC--CCEEEEeCCCCC-h---HHHHHHHHcCCCCEEEEcCC
Confidence 34555556667778887776665555444444444444433 444544443221 1 12222222334667777742
Q ss_pred cc---ccccCCCC-hHHHHHHHHHHHhCCCCcEEEEecCCChHH-HHHH------HHHhcCCCCeEEecCCCCCcceEEE
Q 011387 168 HC---ISSWGHDF-RPSYRKLSSLRNYLPDVPILALTATAAPKV-QKDV------MESLCLQNPLVLKSSFNRPNLFYEV 236 (487)
Q Consensus 168 h~---~~~~g~~f-~~~~~~l~~l~~~~~~~~~i~lSAT~~~~~-~~~i------~~~l~~~~~~~~~~~~~~~~~~~~v 236 (487)
.. +...+.|. ...+.....+.+ .....+.+++....... .... .+..++... +... .
T Consensus 153 ~~~~~~~~V~~D~~~~~~~a~~~L~~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~---------~~~~--~ 220 (338)
T 3dbi_A 153 LRKNSSHSVWCDHKQTSFNAVAELIN-AGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALN---------EKLI--A 220 (338)
T ss_dssp CSSSGGGEECBCHHHHHHHHHHHHHH-TTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCC---------GGGE--E
T ss_pred CCCCCCCEEEEChHHHHHHHHHHHHH-CCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCC---------cceE--E
Confidence 11 11122223 333334444444 45667888877643322 1111 111121110 0111 0
Q ss_pred EeeCchhhHHHHHHHHHHhCCCceEEEEecccchHHHHHHHHHhCCCc
Q 011387 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (487)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~ 284 (487)
......+.....+.+++... ..+.-|||.+-..+..+.+.|++.|+.
T Consensus 221 ~~~~~~~~~~~~~~~ll~~~-~~~~ai~~~nd~~A~g~~~al~~~G~~ 267 (338)
T 3dbi_A 221 NGKWTPASGAEGVEMLLERG-AKFSALVASNDDMAIGAMKALHERGVA 267 (338)
T ss_dssp CCCSSHHHHHHHHHHHHHTT-CCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred eCCCCHHHHHHHHHHHHcCC-CCCeEEEECChHHHHHHHHHHHHcCCC
Confidence 11111234455566666543 456678898888888888888887654
No 451
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=50.44 E-value=9.3 Score=34.06 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~l 72 (487)
+..+++.+++|||||.....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999986543
No 452
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=50.30 E-value=9.1 Score=31.82 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=14.1
Q ss_pred CEEEEcCCCchhhHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (487)
.+++.++.|||||....
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 36889999999998654
No 453
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=50.05 E-value=11 Score=35.50 Aligned_cols=31 Identities=16% Similarity=0.076 Sum_probs=20.2
Q ss_pred EEEEcCCCchhhHHHH-HhHhcCCCeEEEeCc
Q 011387 56 CFCLMPTGGGKSMCYQ-IPALAKPGIVLVVSP 86 (487)
Q Consensus 56 vlv~apTGsGKTl~~~-lp~l~~~~~~lvl~P 86 (487)
+++.++.|+|||...- +.....+.++.||.|
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~ 38 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN 38 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECS
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe
Confidence 5789999999997643 222334555555555
No 454
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=49.80 E-value=8.2 Score=34.80 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~l 72 (487)
...+++.+|.|||||.....
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34688999999999976543
No 455
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=49.80 E-value=9 Score=32.93 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=13.8
Q ss_pred CEEEEcCCCchhhHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (487)
.+++.+++|||||....
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36789999999997543
No 456
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=49.65 E-value=19 Score=32.99 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=34.1
Q ss_pred CCCceEEEEecccchHHHHHHHHHhCCC-ceEEecCCCCH
Q 011387 256 NGDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLND 294 (487)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~~g~-~~~~~h~~l~~ 294 (487)
..+.++++||.+-..+...+..|...|+ ++..|.||+..
T Consensus 228 ~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 228 SYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp CSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 3567899999998899999999999998 58999999874
No 457
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=49.60 E-value=19 Score=37.79 Aligned_cols=70 Identities=9% Similarity=0.134 Sum_probs=49.8
Q ss_pred ceEEEEecccchHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-----cccc-c-ccCCC
Q 011387 259 TCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-I-DRKDV 327 (487)
Q Consensus 259 ~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~-----~~~G-i-Dip~v 327 (487)
.++||.++++.-+.+.++.+.+. ++.+..++|+.+...+...+. ...+|+|+|.- +..| + +..++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 67999999999998888888764 789999999986543222221 24789999963 2222 3 56677
Q ss_pred cEEEE
Q 011387 328 RLVCH 332 (487)
Q Consensus 328 ~~VI~ 332 (487)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88874
No 458
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=49.53 E-value=8.1 Score=32.63 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=12.2
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~l 72 (487)
+.-+++.++.|||||.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45678999999999987644
No 459
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=49.41 E-value=8.5 Score=32.78 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
+.-+++.++.|+|||....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4567899999999997653
No 460
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=49.37 E-value=7.9 Score=36.46 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|+-+.+++|+|+|||...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp TTCEEEEESSSCHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 4667889999999999754
No 461
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=49.17 E-value=8.7 Score=33.07 Aligned_cols=20 Identities=20% Similarity=-0.024 Sum_probs=15.5
Q ss_pred CEEEEcCCCchhhHHHHHhH
Q 011387 55 DCFCLMPTGGGKSMCYQIPA 74 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~lp~ 74 (487)
-+.+.+++|||||....+-+
T Consensus 10 ~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46788999999998765433
No 462
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=49.13 E-value=13 Score=45.68 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=17.9
Q ss_pred HHcCCCEEEEcCCCchhhHHH
Q 011387 50 VLSGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 50 ~l~~~dvlv~apTGsGKTl~~ 70 (487)
+..++.++++||||+|||...
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 346789999999999999865
No 463
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=48.76 E-value=9.5 Score=33.57 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~l 72 (487)
+..+++.+++|||||.....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34678999999999986543
No 464
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=48.61 E-value=7.8 Score=34.12 Aligned_cols=19 Identities=16% Similarity=0.016 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
|.-+.+.+|+|+|||....
T Consensus 25 G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567899999999996553
No 465
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=48.32 E-value=12 Score=38.44 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
+..+++.+|+|+|||....
T Consensus 108 g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp SCEEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5679999999999998653
No 466
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=48.25 E-value=11 Score=41.37 Aligned_cols=71 Identities=8% Similarity=0.075 Sum_probs=46.9
Q ss_pred CceEEEEecccchHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc-----ccc-c-ccCC
Q 011387 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKD 326 (487)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~-----~~G-i-Dip~ 326 (487)
+.++||.++++.-+.+.++.+++. ++.+..+||+.+...+...+. +..+|+|+|... ..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 678999999999998888877764 899999999987655332221 246899999632 112 2 4556
Q ss_pred CcEEEE
Q 011387 327 VRLVCH 332 (487)
Q Consensus 327 v~~VI~ 332 (487)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788774
No 467
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=48.20 E-value=9.8 Score=34.22 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
+.-+++.+|.|||||...-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999997543
No 468
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=47.99 E-value=9.7 Score=33.06 Aligned_cols=19 Identities=21% Similarity=0.020 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.+.-+++.++.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 3566889999999999764
No 469
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=47.63 E-value=41 Score=37.09 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=62.4
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHH-cCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhh
Q 011387 77 KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155 (487)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~ 155 (487)
.+.++||+++++.-+....+.|.. .|+.+..++++.....+.........+...++++++| .++.. | .+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-~v~~~-G--------lD 571 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-EIGSE-G--------RN 571 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-CCTTC-S--------SC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-chhhc-C--------CC
Confidence 478999999999999999999985 6999999999999888888888888776568888877 33332 2 23
Q ss_pred cCCccEEEEeccc
Q 011387 156 RGLLNLVAIDEAH 168 (487)
Q Consensus 156 ~~~l~~lViDEah 168 (487)
...++.+|+-+..
T Consensus 572 l~~~~~VI~~d~p 584 (968)
T 3dmq_A 572 FQFASHMVMFDLP 584 (968)
T ss_dssp CTTCCEEECSSCC
T ss_pred cccCcEEEEecCC
Confidence 3346666654443
No 470
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=47.48 E-value=7 Score=33.27 Aligned_cols=16 Identities=13% Similarity=-0.004 Sum_probs=13.0
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
-+.+++++|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999654
No 471
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=47.41 E-value=8.5 Score=33.65 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.1
Q ss_pred CEEEEcCCCchhhHHH
Q 011387 55 DCFCLMPTGGGKSMCY 70 (487)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (487)
-.++.+|+|+|||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 3578899999999754
No 472
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=47.29 E-value=12 Score=31.17 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=30.7
Q ss_pred CceEEEEecccc---------hHHHHHHHHHhCCCceEEecCCCC
Q 011387 258 DTCAIVYCLERT---------TCDELSAYLSAGGISCAAYHAGLN 293 (487)
Q Consensus 258 ~~~~iIf~~s~~---------~~~~l~~~L~~~g~~~~~~h~~l~ 293 (487)
+.+++|||.+-. .+..++..|.+.|+.+..+.||+.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~ 137 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 137 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHH
Confidence 568999999873 478889999999999999999863
No 473
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=46.98 E-value=9.7 Score=33.35 Aligned_cols=17 Identities=24% Similarity=0.079 Sum_probs=14.1
Q ss_pred CEEEEcCCCchhhHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (487)
.+++.+++|||||....
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998654
No 474
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=46.95 E-value=11 Score=32.17 Aligned_cols=15 Identities=20% Similarity=0.003 Sum_probs=12.9
Q ss_pred EEEEcCCCchhhHHH
Q 011387 56 CFCLMPTGGGKSMCY 70 (487)
Q Consensus 56 vlv~apTGsGKTl~~ 70 (487)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999764
No 475
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=46.77 E-value=10 Score=34.11 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|+-+.+.+|.|+|||...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999754
No 476
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=46.49 E-value=70 Score=31.24 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=13.9
Q ss_pred CEEEEcCCCchhhHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (487)
-+++++++|||||..+.
T Consensus 260 lIil~G~pGSGKSTla~ 276 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQ 276 (416)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999998654
No 477
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=46.41 E-value=29 Score=34.21 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=43.6
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcc
Q 011387 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (487)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe 139 (487)
+++++|++|++.-++...+.|++.+..+..+++. .+..+......+. .+++++|..
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~--~~vLVaT~v 226 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEK--WDFVITTDI 226 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSC--CSEEEECGG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCC--CeEEEECch
Confidence 6789999999999999999999999999988875 2334455555554 778777754
No 478
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=46.39 E-value=15 Score=39.42 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 011387 53 GRDCFCLMPTGGGKSMCYQ 71 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~ 71 (487)
..++++.+|+|+|||....
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999998764
No 479
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=46.36 E-value=11 Score=32.79 Aligned_cols=19 Identities=21% Similarity=-0.036 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.+.-+++.++.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566889999999999765
No 480
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=46.32 E-value=11 Score=33.37 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.0
Q ss_pred EEEEcCCCchhhHHHHH
Q 011387 56 CFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 56 vlv~apTGsGKTl~~~l 72 (487)
+++.++.|||||.....
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999986543
No 481
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=46.31 E-value=12 Score=33.09 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|.-+.+.+|.|+|||...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677889999999999754
No 482
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=45.91 E-value=11 Score=32.12 Aligned_cols=15 Identities=27% Similarity=0.053 Sum_probs=12.8
Q ss_pred EEEEcCCCchhhHHH
Q 011387 56 CFCLMPTGGGKSMCY 70 (487)
Q Consensus 56 vlv~apTGsGKTl~~ 70 (487)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999764
No 483
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=45.75 E-value=19 Score=33.86 Aligned_cols=17 Identities=24% Similarity=0.032 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchhhHHH
Q 011387 54 RDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (487)
..++|.||.|+|||...
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57889999999999653
No 484
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=45.70 E-value=13 Score=39.63 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCEE--EEcCCCchhhHH
Q 011387 45 DAIQAVLSGRDCF--CLMPTGGGKSMC 69 (487)
Q Consensus 45 ~~i~~~l~~~dvl--v~apTGsGKTl~ 69 (487)
..++.+++|.++. .-+.||||||..
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~T 479 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFT 479 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhc
Confidence 3677888998754 456999999975
No 485
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=45.35 E-value=8.3 Score=34.38 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|.-+.+.+|.|+|||...
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp TTCEEEEEECTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566789999999999753
No 486
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=45.24 E-value=12 Score=36.30 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|+-+++.+|+|+|||...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567889999999999754
No 487
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=45.13 E-value=12 Score=32.45 Aligned_cols=39 Identities=15% Similarity=-0.074 Sum_probs=23.2
Q ss_pred CEEEEcCCCchhhHHHHHhHhcCCCeEEEeCcHHHHHHHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVI 96 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~lp~l~~~~~~lvl~P~~~L~~q~~~ 96 (487)
.+.+.++.|||||.+.-.-+-..+ +.+...-.++.+.+.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg---~~vid~D~~~~~~~~ 52 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYG---AHVVNVDRIGHEVLE 52 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC---CEEEECcHHHHHHHH
Confidence 356889999999987644332212 233445555555443
No 488
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=44.95 E-value=1.7e+02 Score=31.31 Aligned_cols=130 Identities=14% Similarity=0.121 Sum_probs=75.3
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHHhcCCCcccEEEeCcccccChhhHHHHHhhhhc
Q 011387 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (487)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~v~t~~~~~~l~~~~~~ 156 (487)
.+.++||++..+..+.-..+.|...|+....+.++.....+.........+.....++.++...... ..++
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~---------GlNL 641 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGL---------GINL 641 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTT---------TCCC
T ss_pred CCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccC---------CCCc
Confidence 3679999999999988888889889999999999999999888888777654333233333222211 1222
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCc--E--EEEecCCChHHHHHHHHHhcCCCCe
Q 011387 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP--I--LALTATAAPKVQKDVMESLCLQNPL 221 (487)
Q Consensus 157 ~~l~~lViDEah~~~~~g~~f~~~~~~l~~l~~~~~~~~--~--i~lSAT~~~~~~~~i~~~l~~~~~~ 221 (487)
...+.+|+=+ ..|. .......+++..+.-...+ + ++...|....+.+.....+.+....
T Consensus 642 ~~a~~VI~~D----~~wn--p~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~v 704 (800)
T 3mwy_W 642 MTADTVVIFD----SDWN--PQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAI 704 (800)
T ss_dssp TTCCEEEESS----CCSC--SHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC--
T ss_pred cccceEEEec----CCCC--hhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 2344444322 2254 3333344444433222222 2 3444555555655555666555444
No 489
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=44.82 E-value=15 Score=41.34 Aligned_cols=64 Identities=14% Similarity=0.033 Sum_probs=49.3
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccccc-cccCCCcEE
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDVRLV 330 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~-----~~~~G-iDip~v~~V 330 (487)
.+.++||.++++.-+.+.++.+.+....+..++|+.+ .++..+|+|+|. .+..| ..+.++.+|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 4568999999999999999999886668899999986 346789999994 33333 235566776
Q ss_pred E
Q 011387 331 C 331 (487)
Q Consensus 331 I 331 (487)
|
T Consensus 295 V 295 (1108)
T 3l9o_A 295 I 295 (1108)
T ss_dssp E
T ss_pred E
Confidence 6
No 490
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=44.42 E-value=14 Score=35.32 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=24.8
Q ss_pred HHHHHHcC-----CCEEEEcCCCchhhHHH-HHhHhc--C------CCeEEEeC
Q 011387 46 AIQAVLSG-----RDCFCLMPTGGGKSMCY-QIPALA--K------PGIVLVVS 85 (487)
Q Consensus 46 ~i~~~l~~-----~dvlv~apTGsGKTl~~-~lp~l~--~------~~~~lvl~ 85 (487)
.++.++.+ .-+.+.+|+|+|||... ++.... . ++.++++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~ 172 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 172 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe
Confidence 34555543 45779999999999644 333332 1 35667765
No 491
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=44.32 E-value=12 Score=33.97 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|+-+.+.+|.|+|||...
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999754
No 492
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=44.25 E-value=12 Score=33.40 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|+-+.+.+|.|+|||...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999754
No 493
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=44.25 E-value=12 Score=34.66 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|.-+.+.+|.|+|||...
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566789999999999754
No 494
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=44.24 E-value=16 Score=34.50 Aligned_cols=15 Identities=20% Similarity=-0.119 Sum_probs=12.5
Q ss_pred EEEEcCCCchhhHHH
Q 011387 56 CFCLMPTGGGKSMCY 70 (487)
Q Consensus 56 vlv~apTGsGKTl~~ 70 (487)
+.+.||+|||||...
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568899999999754
No 495
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=44.17 E-value=91 Score=23.89 Aligned_cols=57 Identities=5% Similarity=0.020 Sum_probs=38.4
Q ss_pred CCceEEEEe------cccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 011387 257 GDTCAIVYC------LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (487)
Q Consensus 257 ~~~~~iIf~------~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLV 313 (487)
...+++||. ++...|..+.+.|.+.|+....+.-..+++.+..+.+.-....+..++
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~if 76 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY 76 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEE
Confidence 345799998 467789999999999998877665555566555554432233444443
No 496
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=44.12 E-value=12 Score=32.69 Aligned_cols=18 Identities=22% Similarity=0.030 Sum_probs=14.6
Q ss_pred CEEEEcCCCchhhHHHHH
Q 011387 55 DCFCLMPTGGGKSMCYQI 72 (487)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (487)
-+.+.++.|||||.....
T Consensus 6 ~I~i~G~~GSGKST~~~~ 23 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANA 23 (218)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999986543
No 497
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=43.91 E-value=1.4e+02 Score=24.84 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=49.4
Q ss_pred CCceEEEEecccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccccccCCCcEEEEeCC
Q 011387 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335 (487)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~ 335 (487)
+.+.+-|.|.+...+..+.+.|.+.|+++..+.++-. ...-.|.|.|.-.+.|+-. +.||.+++
T Consensus 60 g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 60 ERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETC
T ss_pred CCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecC
Confidence 3566888999999999999999999998877765431 1234699999999999884 56666664
No 498
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=43.90 E-value=12 Score=35.01 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=19.8
Q ss_pred CCCEEEEcCCCchhhHHHH-HhHhc--CCCeEEEeC
Q 011387 53 GRDCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS 85 (487)
Q Consensus 53 ~~dvlv~apTGsGKTl~~~-lp~l~--~~~~~lvl~ 85 (487)
+.-+.+++|+|+|||...- +..+. .++.+.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3456789999999996543 22222 245555543
No 499
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=43.90 E-value=12 Score=34.22 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 011387 52 SGRDCFCLMPTGGGKSMCY 70 (487)
Q Consensus 52 ~~~dvlv~apTGsGKTl~~ 70 (487)
.|+-+.+.+|.|+|||...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999754
No 500
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=43.89 E-value=91 Score=23.32 Aligned_cols=55 Identities=5% Similarity=0.089 Sum_probs=38.6
Q ss_pred ceEEEEe------cccchHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 011387 259 TCAIVYC------LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (487)
Q Consensus 259 ~~~iIf~------~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vLV 313 (487)
.+++||. ++...|..+...|.+.++....+.-...++.+..+.+.+....+..++
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 4688887 466789999999999998877776666666666655554434455543
Done!