Query 011389
Match_columns 487
No_of_seqs 314 out of 929
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 07:08:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w4s_A Polybromo, polybromo 1 100.0 1.4E-30 4.9E-35 242.8 9.5 140 103-249 3-144 (174)
2 3swr_A DNA (cytosine-5)-methyl 99.9 5.7E-26 1.9E-30 258.5 17.5 141 100-249 132-283 (1002)
3 2lw4_A Transcription elongatio 99.9 2.9E-26 1E-30 201.1 5.8 101 345-487 6-108 (113)
4 3ndq_A Transcription elongatio 99.9 5.5E-26 1.9E-30 197.8 7.0 95 346-482 11-107 (108)
5 3av4_A DNA (cytosine-5)-methyl 99.9 9E-25 3.1E-29 254.0 13.3 141 100-249 443-595 (1330)
6 2dme_A PHD finger protein 3; P 99.9 4.4E-24 1.5E-28 189.0 8.4 103 346-487 7-111 (120)
7 3po3_S Transcription elongatio 99.9 4.2E-23 1.4E-27 193.9 7.9 93 346-482 12-108 (178)
8 4dov_A ORC1, origin recognitio 99.8 9.9E-20 3.4E-24 168.0 16.8 140 102-248 8-161 (163)
9 3swr_A DNA (cytosine-5)-methyl 99.8 2.6E-19 8.8E-24 204.1 14.3 133 117-250 321-504 (1002)
10 1pqv_S STP-alpha, transcriptio 99.8 9.8E-20 3.4E-24 184.0 9.4 95 345-483 142-240 (309)
11 4ft4_B DNA (cytosine-5)-methyl 99.8 1.2E-19 4.1E-24 201.4 10.0 132 117-249 44-182 (784)
12 3av4_A DNA (cytosine-5)-methyl 99.8 1E-18 3.5E-23 203.6 11.9 133 117-250 633-815 (1330)
13 2fl7_A Regulatory protein SIR3 99.3 2.8E-12 9.6E-17 124.5 6.7 125 127-252 49-195 (232)
14 1m4z_A Origin recognition comp 99.3 1.5E-12 5.3E-17 126.8 4.6 126 127-253 49-196 (238)
15 1kdx_A CBP; complex (transcrip 46.2 61 0.0021 26.5 6.9 64 349-451 12-75 (81)
16 2ca6_A RAN GTPase-activating p 45.4 8.3 0.00028 37.8 2.0 12 40-51 330-341 (386)
17 3llr_A DNA (cytosine-5)-methyl 43.3 12 0.0004 34.1 2.4 44 127-172 13-59 (154)
18 2gfu_A DNA mismatch repair pro 38.7 18 0.00062 31.6 2.9 46 125-172 17-68 (134)
19 3zzs_A Transcription attenuati 32.3 53 0.0018 25.7 4.2 48 166-216 13-60 (65)
20 2a7y_A Hypothetical protein RV 29.2 34 0.0012 28.2 2.8 43 132-175 7-49 (83)
21 1khc_A DNA cytosine-5 methyltr 26.7 18 0.00061 32.5 0.8 44 127-172 8-54 (147)
22 3zte_A Tryptophan operon RNA-b 26.4 58 0.002 26.3 3.6 48 166-216 21-68 (78)
23 4fu6_A PC4 and SFRS1-interacti 26.1 32 0.0011 30.6 2.4 27 129-157 21-47 (153)
24 1ri0_A Hepatoma-derived growth 24.5 18 0.00063 30.7 0.4 44 126-171 15-60 (110)
25 2l8d_A Lamin-B receptor; DNA b 24.2 79 0.0027 24.9 3.9 29 128-157 7-35 (66)
26 2l89_A PWWP domain-containing 23.5 37 0.0012 28.6 2.1 43 128-172 3-52 (108)
27 2daq_A WHSC1L1 protein, isofor 23.2 20 0.0007 30.0 0.5 28 127-156 5-32 (110)
28 4hcz_A PHD finger protein 1; p 22.2 92 0.0031 24.0 3.8 28 130-159 3-30 (58)
29 2dig_A Lamin-B receptor; tudor 22.1 95 0.0032 24.6 4.0 28 129-157 11-38 (68)
30 3qby_A Hepatoma-derived growth 22.1 46 0.0016 27.3 2.4 40 130-171 5-46 (94)
31 2eqj_A Metal-response element- 22.1 88 0.003 24.7 3.8 28 130-159 13-40 (66)
No 1
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=99.96 E-value=1.4e-30 Score=242.78 Aligned_cols=140 Identities=24% Similarity=0.420 Sum_probs=103.9
Q ss_pred ccccceeecCCCCCcceeeeEEEEcCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCCCCceEEEEEEeecccccCCCCC
Q 011389 103 PVGELVRFSGKGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEADRKGG 182 (487)
Q Consensus 103 ~iG~pvk~~gKG~~~R~~Y~sf~~dG~~YrVGD~VyV~~e~~~~~pyIArI~~I~e~~dG~~~VrVqWFYRPeEt~~~~~ 182 (487)
|.|.|. ++.++|.||++|.++|.+|+|||||||.+++.+.+||||+|.+||++.+|.++|+|+|||||+||.+...
T Consensus 3 ~~g~~~----~~~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~~~~ 78 (174)
T 1w4s_A 3 SSGSAG----LSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLAT 78 (174)
T ss_dssp ---------------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGGSCCCTT
T ss_pred ccCCcc----ccCCCcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEecCHHHcccccC
Confidence 445543 3445789999999999999999999999987678999999999999989999999999999999998665
Q ss_pred CCCCCCCCCeeEeeCCcccccccccceecEEEEcCccccC-CC-CCCCCceEEeeeeecCCcEEeecCC
Q 011389 183 GNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQL-PN-RKQHPGFIVQKVYDTVERKLWKLTD 249 (487)
Q Consensus 183 g~~~~~~~nELFlS~h~D~iplesI~GKC~V~~~~ey~~l-p~-~~~~~~F~Cr~vYD~~~kkl~~L~d 249 (487)
+.+ ++||||+|+|++++|+++|+|||.|++..+|.+. |. ....+.|||+..||...++|..+..
T Consensus 79 ~~~---~~~EvF~S~~~d~~~~~~I~gkC~V~~~~~~~~~~p~~~~~~dvF~c~~~Yd~~~~~f~~i~~ 144 (174)
T 1w4s_A 79 RKF---LEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKIKL 144 (174)
T ss_dssp CEE---ETTEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTEEETTCCGGGEEEEEEEEETTTTEEEECSS
T ss_pred CcC---CCCeeEEeCCcceecHHHeeeeEEEEECchhhhcCcCCCCCCCEEEEeEEEccccCeEccCcc
Confidence 555 6999999999999999999999999999998765 22 1234779999999999999988754
No 2
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.93 E-value=5.7e-26 Score=258.54 Aligned_cols=141 Identities=20% Similarity=0.286 Sum_probs=122.3
Q ss_pred CccccccceeecCCCCCcceeeeEEEEcCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCCCCceEEEEEEeecccccCC
Q 011389 100 DAKPVGELVRFSGKGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEADR 179 (487)
Q Consensus 100 ~a~~iG~pvk~~gKG~~~R~~Y~sf~~dG~~YrVGD~VyV~~e~~~~~pyIArI~~I~e~~dG~~~VrVqWFYRPeEt~~ 179 (487)
...|+|.|+ ++..++.+|+++.++|.+|+|||||||.++++..+||||+|++||++.+|.+||+|+|||||+||.+
T Consensus 132 ~~~W~G~p~----k~~~~~~~Y~s~~v~g~~i~VGD~V~v~~~d~~~ppyIarIe~m~ed~~g~k~~~v~Wf~rp~ET~l 207 (1002)
T 3swr_A 132 RISWVGEAV----KTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVL 207 (1002)
T ss_dssp CEEEESCCC----CCBTTEEECSEEEETTEEEETTCEEEECBSSTTSCCEEEEEEEEEEETTTEEEEEEEEEEEGGGSTT
T ss_pred cccccCccc----ccccCceeeeEEEECCEEEecCCEEEEecCCCCCCceEEEEEEEeecCCCCeEEEEEEEecchhccc
Confidence 446999999 4555799999999999999999999999988778889999999999988999999999999999987
Q ss_pred CCCCCCCCCCCCeeEeeCCcccccccccceecEEEEcCccc----------cCC-CCCCCCceEEeeeeecCCcEEeecC
Q 011389 180 KGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHK----------QLP-NRKQHPGFIVQKVYDTVERKLWKLT 248 (487)
Q Consensus 180 ~~~g~~~~~~~nELFlS~h~D~iplesI~GKC~V~~~~ey~----------~lp-~~~~~~~F~Cr~vYD~~~kkl~~L~ 248 (487)
+.. ++++|||+|+||+++++++|+|||+|++...+. ..+ ....+++|||+..||..+++|.+|+
T Consensus 208 g~~-----~~~~ElFlsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp 282 (1002)
T 3swr_A 208 GAT-----SDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFESPP 282 (1002)
T ss_dssp GGG-----SCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCCCCCSCCCCCCTSEEEEEEEETTTTEEECCC
T ss_pred ccC-----CCCCceEeeccccCCcHHHhceeeEEEEccCCcchhhhcccccccccccCCCCeEEEEEEECCCCCcccCCC
Confidence 432 589999999999999999999999999975511 111 1123689999999999999999997
Q ss_pred C
Q 011389 249 D 249 (487)
Q Consensus 249 d 249 (487)
.
T Consensus 283 ~ 283 (1002)
T 3swr_A 283 K 283 (1002)
T ss_dssp C
T ss_pred h
Confidence 6
No 3
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.92 E-value=2.9e-26 Score=201.06 Aligned_cols=101 Identities=22% Similarity=0.231 Sum_probs=87.6
Q ss_pred cccChhHHHHHHHHHHHHHhhhhcCCcccccccCCCCCCCCCCCCCcccccCccCCccccccCCCCCCCChhHHHHHHHH
Q 011389 345 ALTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPDTAIAAVTA 424 (487)
Q Consensus 345 ~~tgd~~RDk~le~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~v~~~a~~ 424 (487)
.+|||++||+|+++||+||+...+.... ..++..+|.+
T Consensus 6 p~t~D~vRdk~~e~L~~aL~~~~~~~~~------------------------------------------~~~~~~~A~~ 43 (113)
T 2lw4_A 6 PVTCDAVRNKCREMLTAALQTDHDHVAI------------------------------------------GADCERLSAQ 43 (113)
T ss_dssp CCCCSTTHHHHHHHHHHHHHSSTHHHHH------------------------------------------TCCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCcccc------------------------------------------cchHHHHHHH
Confidence 4699999999999999999764332200 1145588999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcc--CCHHHHhhhhcCCCCccccccCChhhcCCCCCCCC
Q 011389 425 LEKASHDTLSLDFQKYNQKLRQLLFNLK--STALLARRLLNGELEPSKILNMSPNELKVLYCPSW 487 (487)
Q Consensus 425 iE~a~~~~~~~~~~~Yk~K~Rsl~fNLK--~Np~Lr~rvl~Gei~p~~l~~Mt~~Ema~~~~~~~ 487 (487)
||.++|..|++++.+|++|+|||+|||| +||+||++||+|+|+|++||+||++|||+--...|
T Consensus 44 IE~~~f~~~~~~~~~Yk~k~Rsl~~NLkd~~Np~Lr~~vl~G~i~p~~l~~Ms~eEmAs~elk~~ 108 (113)
T 2lw4_A 44 IEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEI 108 (113)
T ss_dssp HHHHHHHHHTCTTTHHHHHHHHHHHHHHCSSSSHHHHHHHTTSSCHHHHHHSCHHHHHCTTTTTC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHcCCCCHHHHhcCCHHHcCCHHHHHH
Confidence 9999999998888899999999999997 69999999999999999999999999999877766
No 4
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=99.92 E-value=5.5e-26 Score=197.84 Aligned_cols=95 Identities=21% Similarity=0.205 Sum_probs=81.9
Q ss_pred ccChhHHHHHHHHHHHHHhhhhcCCcccccccCCCCCCCCCCCCCcccccCccCCccccccCCCCCCCChhHHHHHHHHH
Q 011389 346 LTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPDTAIAAVTAL 425 (487)
Q Consensus 346 ~tgd~~RDk~le~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~v~~~a~~i 425 (487)
+|||++||||+++||+||+..++.+.. ..++..+|.+|
T Consensus 11 ~t~d~vR~k~~~lL~~aL~~~~d~~~~------------------------------------------~~~~~~lA~~I 48 (108)
T 3ndq_A 11 STSDSVRLKCREMLAAALRTGDDYIAI------------------------------------------GADEEELGSQI 48 (108)
T ss_dssp CCCCHHHHHHHHHHHHHTTGGGHHHHH------------------------------------------TCCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHcCCCCCcc------------------------------------------cccHHHHHHHH
Confidence 599999999999999999886533210 01566899999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhcc--CCHHHHhhhhcCCCCccccccCChhhcCCC
Q 011389 426 EKASHDTLSLDFQKYNQKLRQLLFNLK--STALLARRLLNGELEPSKILNMSPNELKVL 482 (487)
Q Consensus 426 E~a~~~~~~~~~~~Yk~K~Rsl~fNLK--~Np~Lr~rvl~Gei~p~~l~~Mt~~Ema~~ 482 (487)
|.++|..|+.++.+||+|+|||+|||| +||+||++||+|+|+|++||+||++|||+-
T Consensus 49 E~~if~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~Lr~~vl~G~isp~~lv~Ms~eEmAS~ 107 (108)
T 3ndq_A 49 EEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASD 107 (108)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHHTCTTCHHHHHHHHHTSSCHHHHHHCCTTTC---
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHcCCcCHHHHhCCCHHHccCC
Confidence 999999998877899999999999998 799999999999999999999999999973
No 5
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.91 E-value=9e-25 Score=254.05 Aligned_cols=141 Identities=18% Similarity=0.309 Sum_probs=118.6
Q ss_pred CccccccceeecCCCCCcceeeeEEEEcCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCCCCceEEEEEEeecccccCC
Q 011389 100 DAKPVGELVRFSGKGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEADR 179 (487)
Q Consensus 100 ~a~~iG~pvk~~gKG~~~R~~Y~sf~~dG~~YrVGD~VyV~~e~~~~~pyIArI~~I~e~~dG~~~VrVqWFYRPeEt~~ 179 (487)
+-+|+|.|++.. .+++||+++.++|.+|+|||||||.+++++.++|||+|++||++.+|..||+|+|||||+||.+
T Consensus 443 ~i~W~G~p~k~~----~~~~~Y~~~~v~g~~~~vGD~V~v~~~d~~~p~yiarIe~iwe~~dg~~~~~~~WfyRp~ETvl 518 (1330)
T 3av4_A 443 RISWLGQPMKIE----ENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVL 518 (1330)
T ss_dssp CEEEESSCSCCC------CEEECSEEEESSEEETTCEEEECBCCSSCCCEEEEEEEEEEETTCCEEEEEEEEEEGGGSTT
T ss_pred CceEccCceecc----CCceeeeEEEECCEEEecCCEEEEeCCCCCCCCEEEEEeeeeecCCCCEEEEEEEEEchHHccc
Confidence 455999988444 3699999999999999999999999887667899999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCeeEeeCCcccccccccceecEEEEcCc---cccC----CCC-----CCCCceEEeeeeecCCcEEeec
Q 011389 180 KGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPI---HKQL----PNR-----KQHPGFIVQKVYDTVERKLWKL 247 (487)
Q Consensus 180 ~~~g~~~~~~~nELFlS~h~D~iplesI~GKC~V~~~~e---y~~l----p~~-----~~~~~F~Cr~vYD~~~kkl~~L 247 (487)
+. .++++|||+|+|+|++++++|+|||.|+++.. |... +.. .....|||+..||...++|+++
T Consensus 519 g~-----~~~~rElFlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~C~~~Yd~~~~~F~~l 593 (1330)
T 3av4_A 519 GA-----TSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFESP 593 (1330)
T ss_dssp GG-----GSCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC-------------CCEEEEEEEETTTTEEECC
T ss_pred cc-----ccCCCeEEEecccccCcHHHhcceeEEEEeccchhhhhhcccCccccccccccCCceEEEeEECCccCccCCc
Confidence 33 26999999999999999999999999999766 3221 111 2356899999999999999999
Q ss_pred CC
Q 011389 248 TD 249 (487)
Q Consensus 248 ~d 249 (487)
+.
T Consensus 594 p~ 595 (1330)
T 3av4_A 594 PK 595 (1330)
T ss_dssp CC
T ss_pred Cc
Confidence 77
No 6
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=4.4e-24 Score=189.01 Aligned_cols=103 Identities=26% Similarity=0.370 Sum_probs=90.0
Q ss_pred ccChhHHHHHHHHHHHHHhhhhcCCcccccccCCCCCCCCCCCCCcccccCccCCccccccCCCCCCCChhHHHHHHHHH
Q 011389 346 LTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPDTAIAAVTAL 425 (487)
Q Consensus 346 ~tgd~~RDk~le~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~v~~~a~~i 425 (487)
.++|.+||+|+++|+++|.....+.+.. . . ..++..+|.+|
T Consensus 7 ~~~d~~Rd~~r~~L~eaL~~~~~~~~~~------------------------~--------------~-~~~~~~lA~~I 47 (120)
T 2dme_A 7 GSADQIRQSVRHSLKDILMKRLTDSNLK------------------------V--------------P-EEKAAKVATKI 47 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTTTCC------------------------C--------------C-HHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHhccccccc------------------------c--------------c-hhHHHHHHHHH
Confidence 3679999999999999998876543110 0 0 34788999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhcc--CCHHHHhhhhcCCCCccccccCChhhcCCCCCCCC
Q 011389 426 EKASHDTLSLDFQKYNQKLRQLLFNLK--STALLARRLLNGELEPSKILNMSPNELKVLYCPSW 487 (487)
Q Consensus 426 E~a~~~~~~~~~~~Yk~K~Rsl~fNLK--~Np~Lr~rvl~Gei~p~~l~~Mt~~Ema~~~~~~~ 487 (487)
|.+||..|+.++.+|++|+|||+|||| +||+||++||+|+|+|++||+||++|||+.-...|
T Consensus 48 E~~lf~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~Lr~~vl~G~i~p~~lv~Ms~eEmAS~elk~~ 111 (120)
T 2dme_A 48 EKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAW 111 (120)
T ss_dssp HHHHHHHHCSCSHHHHHHHHHHTHHHHSSSCCSHHHHHHHTSSCTTHHHHSCTTTTTTCCSTTT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHcCCCCHHHHhcCCHHHcCCHHHHHH
Confidence 999999998888899999999999998 79999999999999999999999999999887776
No 7
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=99.88 E-value=4.2e-23 Score=193.95 Aligned_cols=93 Identities=17% Similarity=0.283 Sum_probs=82.7
Q ss_pred ccChhHHHHHHHHHHHHHhhhhcCCcccccccCCCCCCCCCCCCCcccccCccCCccccccCCCCCCCChhHHHHHHHHH
Q 011389 346 LTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPDTAIAAVTAL 425 (487)
Q Consensus 346 ~tgd~~RDk~le~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~v~~~a~~i 425 (487)
+|||++||+|+++||+||+..++++ |..++.+|.+|
T Consensus 12 ~~~d~vRdk~~~lL~~aL~~~~~~~--------------------------------------------~~~~~~~A~~I 47 (178)
T 3po3_S 12 IYHHKLRDQVLKALYDVLAKESEHP--------------------------------------------PQSILHTAKAI 47 (178)
T ss_dssp ---CHHHHHHHHHHHHHTTSSSSCS--------------------------------------------TTHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHhcCCCCc--------------------------------------------hhhHHHHHHHH
Confidence 6999999999999999999876544 55889999999
Q ss_pred HHHHHHhcCC-ChH-HHHHHHHHHHHhcc--CCHHHHhhhhcCCCCccccccCChhhcCCC
Q 011389 426 EKASHDTLSL-DFQ-KYNQKLRQLLFNLK--STALLARRLLNGELEPSKILNMSPNELKVL 482 (487)
Q Consensus 426 E~a~~~~~~~-~~~-~Yk~K~Rsl~fNLK--~Np~Lr~rvl~Gei~p~~l~~Mt~~Ema~~ 482 (487)
|.+||..+++ ++. +|++|+|||+|||| +||+||++||+|+|+|.+||+||++|||+.
T Consensus 48 E~~if~~~~~~~~~k~Yk~k~Rsl~~NLKd~~N~~Lr~~vl~g~isp~~lv~Ms~eElas~ 108 (178)
T 3po3_S 48 ESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPA 108 (178)
T ss_dssp HHHHHHHTSCSSSSTHHHHHHHHHHHHHHSSSCSHHHHHHHHCCCTTHHHHCCTTTTSSCS
T ss_pred HHHHHHHhcCCCchhhhhhhhhHHHHHcCCCCCHHHHHHHhcCCCCHHHHHhcCchhhCCH
Confidence 9999999986 344 89999999999998 799999999999999999999999999985
No 8
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=99.83 E-value=9.9e-20 Score=168.02 Aligned_cols=140 Identities=22% Similarity=0.279 Sum_probs=110.5
Q ss_pred cccccceeecCCCCCcceeeeEEEE--cC---eEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCC---CCceEEEEEEeec
Q 011389 102 KPVGELVRFSGKGRGRRSHYEAFEF--DG---NKYELEDPVLLTPEDTNQKPYVAIIKEITQSK---DGSMMVTGQWFYR 173 (487)
Q Consensus 102 ~~iG~pvk~~gKG~~~R~~Y~sf~~--dG---~~YrVGD~VyV~~e~~~~~pyIArI~~I~e~~---dG~~~VrVqWFYR 173 (487)
.|+|.|+ ...| ..-.+|+++.+ +| .++++||||+|.+++ ...||||+|+.|+++. ...+.++||||||
T Consensus 8 sW~g~~l-~drk--l~~~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D-~~~PyVAki~~lye~~~e~~~~k~A~VQWy~R 83 (163)
T 4dov_A 8 SWVGRPL-PNRK--QFQQMYREICMKINDGSEIHIKVGQFVLIQGED-NKKPYVAKLIELFQNGAEVPPKKCARVQWFVR 83 (163)
T ss_dssp EEESCCC-CCCC--TTEEEESEEEEECTTSCEEEEETTCEEEECCSS-SSCCEEEEEEEEEEETTSSSCEEEEEEEEEEE
T ss_pred EEeccCc-CCCc--ccceeeeEEEEecCCCCCeEEeeCCEEEEeCCc-ccCChhHHHHHHHhccccCCCceEEEEEeeec
Confidence 5899998 3221 23568999988 56 899999999999887 4778999999999852 3468899999999
Q ss_pred ccccCCCCCCCC--CCCCCCeeEeeCCcc---cccccccceecEEEEcCccccCCCC-CCCCceEEeeeeecCCcEEeec
Q 011389 174 PEEADRKGGGNW--LSRDTRELFYSFHRD---EVPAESVMHKCVVHFVPIHKQLPNR-KQHPGFIVQKVYDTVERKLWKL 247 (487)
Q Consensus 174 PeEt~~~~~g~~--~~~~~nELFlS~h~D---~iplesI~GKC~V~~~~ey~~lp~~-~~~~~F~Cr~vYD~~~kkl~~L 247 (487)
|+|++... .++ ...+.+|||+++|.+ .+++++|+|+|.|+....+..+|.. ....+||.+..+|.. +|.-|
T Consensus 84 ~~EiP~~k-~~l~g~~~~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~p~~~~~e~t~FvklsWd~k--~f~pl 160 (163)
T 4dov_A 84 FLEIPVSK-RHLLGRSPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWNKK--DFAPL 160 (163)
T ss_dssp GGGSCTTT-GGGGCSCCCTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCCCSSCCCCSEEEEEEEECSS--CEEEC
T ss_pred hhhccccc-hhhccCCCCCCeEEEecCCCCcccccHHHeeeceEEEEcCCccccCCCcccceEEEEEEEecCC--cceeC
Confidence 99998522 111 114689999999874 7899999999999999999999844 557899999999964 34444
Q ss_pred C
Q 011389 248 T 248 (487)
Q Consensus 248 ~ 248 (487)
+
T Consensus 161 ~ 161 (163)
T 4dov_A 161 P 161 (163)
T ss_dssp C
T ss_pred C
Confidence 3
No 9
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.79 E-value=2.6e-19 Score=204.12 Aligned_cols=133 Identities=21% Similarity=0.284 Sum_probs=110.3
Q ss_pred cceeeeEEEEcCeEEeeCCeEEEcCCC-----------------------------------------CCCCCeEEEEeE
Q 011389 117 RRSHYEAFEFDGNKYELEDPVLLTPED-----------------------------------------TNQKPYVAIIKE 155 (487)
Q Consensus 117 ~R~~Y~sf~~dG~~YrVGD~VyV~~e~-----------------------------------------~~~~pyIArI~~ 155 (487)
++.+|.+|.++|.+|++||||||.|+. ...|++||+|++
T Consensus 321 ~~~~~~~~~~~g~~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~IgrI~~ 400 (1002)
T 3swr_A 321 SRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKE 400 (1002)
T ss_dssp SCEEESEEEETTEEEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEEEEEE
T ss_pred CcEEEEEEEECCEEEecCCEEEECCcccccccccccccccccccccccccchhhhhccchhccccccCCCCCceeeEEeE
Confidence 478999999999999999999999832 134778999999
Q ss_pred EeeCCCCc-------eEEEEEEeecccccCCCCCCCCCCCCCCeeEeeCCcccccccccceecEEEEcCccccCC---CC
Q 011389 156 ITQSKDGS-------MMVTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLP---NR 225 (487)
Q Consensus 156 I~e~~dG~-------~~VrVqWFYRPeEt~~~~~g~~~~~~~nELFlS~h~D~iplesI~GKC~V~~~~ey~~lp---~~ 225 (487)
||....+. ++|+|+|||||+||++... ...+++.||||+|+|.+++|+.+|+|||.|++..++.... ..
T Consensus 401 i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~-~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~~~~ 479 (1002)
T 3swr_A 401 IFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTP-ASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSM 479 (1002)
T ss_dssp EEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGG-GGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHHHHH
T ss_pred EEecCCccccCCCccEEEEEEEEECccccccccc-ccccCCcceEEEecceeccCHHHcceEEEEEEeccccccchhhcc
Confidence 99766544 9999999999999985432 2345689999999999999999999999999998876432 11
Q ss_pred CCCCceEEeeeeecCCcEEeecCCc
Q 011389 226 KQHPGFIVQKVYDTVERKLWKLTDK 250 (487)
Q Consensus 226 ~~~~~F~Cr~vYD~~~kkl~~L~dk 250 (487)
..++.|||..+||..++.|..++..
T Consensus 480 ~~p~~fyf~~~Yd~~~~~f~~~p~~ 504 (1002)
T 3swr_A 480 GGPNRFYFLEAYNAKSKSFEDPPNH 504 (1002)
T ss_dssp TSSSEEEEEEEEETTTTEEECCCST
T ss_pred CCCCeEEEEEEEeCCCCeeecCccc
Confidence 2458899999999999999887643
No 10
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=99.79 E-value=9.8e-20 Score=184.00 Aligned_cols=95 Identities=19% Similarity=0.296 Sum_probs=84.7
Q ss_pred cccChhHHHHHHHHHHHHHhhhhcCCcccccccCCCCCCCCCCCCCcccccCccCCccccccCCCCCCCChhHHHHHHHH
Q 011389 345 ALTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPDTAIAAVTA 424 (487)
Q Consensus 345 ~~tgd~~RDk~le~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~v~~~a~~ 424 (487)
..|||.+||+|+++|+++|+...++. |.++..+|.+
T Consensus 142 ~~~~d~~R~k~r~~L~~aL~~~~~~~--------------------------------------------~~~~~~~A~~ 177 (309)
T 1pqv_S 142 AIYHHKLRDQVLKALYDVLAKESEHP--------------------------------------------PQSILHTAKA 177 (309)
T ss_pred CcCChHHHHHHHHHHHHHHhcCCCcc--------------------------------------------chhHHHHHHH
Confidence 35899999999999999998653322 3477899999
Q ss_pred HHHHHHHhcCCChHH--HHHHHHHHHHhcc--CCHHHHhhhhcCCCCccccccCChhhcCCCC
Q 011389 425 LEKASHDTLSLDFQK--YNQKLRQLLFNLK--STALLARRLLNGELEPSKILNMSPNELKVLY 483 (487)
Q Consensus 425 iE~a~~~~~~~~~~~--Yk~K~Rsl~fNLK--~Np~Lr~rvl~Gei~p~~l~~Mt~~Ema~~~ 483 (487)
||.+||..|++++.+ |++|||||+|||| +||.||++||+|+|+|++||+||++|||+..
T Consensus 178 IE~al~~~~~~~~~~~~Yk~k~Rsl~~NLKd~~N~~Lr~~vl~g~i~p~~lv~Ms~eElasde 240 (309)
T 1pqv_S 178 IESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAP 240 (309)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHcCcCCChHHHHHHHcCCCCHHHHhcCCHHHhCCHH
Confidence 999999999877666 9999999999998 7999999999999999999999999999863
No 11
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.79 E-value=1.2e-19 Score=201.43 Aligned_cols=132 Identities=19% Similarity=0.316 Sum_probs=107.8
Q ss_pred cceeeeEEEEcCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCCCCceEEEEEEeecccccCCCC----CCCCCCCCCCe
Q 011389 117 RRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEADRKG----GGNWLSRDTRE 192 (487)
Q Consensus 117 ~R~~Y~sf~~dG~~YrVGD~VyV~~e~~~~~pyIArI~~I~e~~dG~~~VrVqWFYRPeEt~~~~----~g~~~~~~~nE 192 (487)
.|+||.++.++|+.|+|||||||+.+. +.++|||+|.+||++.+|..+|+|+|||||+||+... ...-..++.||
T Consensus 44 ~~~~~~~~~~~~~~~~~~d~~~v~~~~-~~~~~i~~i~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~d~~~ 122 (784)
T 4ft4_B 44 ARCHYRSAKVDNVVYCLGDDVYVKAGE-NEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHDPRR 122 (784)
T ss_dssp EEEECSEEEETTEEEETTCEEEECCST-TSCCEEEEEEEEEEETTSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCCCTTB
T ss_pred cceeeeeeeECCEEEeCCCeEEEeCCC-CCCCEEEEEEEEEEcCCCCEEEEEEEeeChhhhcccccccccccccccccce
Confidence 489999999999999999999999865 6789999999999999999999999999999997522 11123468999
Q ss_pred eEeeCCcccccccccceecEEEEcCccccCCC---CCCCCceEEeeeeecCCcEEeecCC
Q 011389 193 LFYSFHRDEVPAESVMHKCVVHFVPIHKQLPN---RKQHPGFIVQKVYDTVERKLWKLTD 249 (487)
Q Consensus 193 LFlS~h~D~iplesI~GKC~V~~~~ey~~lp~---~~~~~~F~Cr~vYD~~~kkl~~L~d 249 (487)
||+|++++++++++|+|||+|+++....+++. ......|||.+.|.....++-.++.
T Consensus 123 ~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 182 (784)
T 4ft4_B 123 VFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCDLYYDMSYSVAYSTFANISS 182 (784)
T ss_dssp EEEEEEEEEEEGGGEEEECCEEECCTTSCHHHHHHHHHHCSEEESEEEETGGGEEEEC--
T ss_pred EEEeCcEEEechHHeeeeEEEEeeCccccchhhhhccCCcceEeccccCccccCccCCCc
Confidence 99999999999999999999999876555431 1113469999999877776666543
No 12
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.76 E-value=1e-18 Score=203.59 Aligned_cols=133 Identities=23% Similarity=0.309 Sum_probs=109.8
Q ss_pred cceeeeEEEEcCeEEeeCCeEEEcCCC-----------------------------------------CCCCCeEEEEeE
Q 011389 117 RRSHYEAFEFDGNKYELEDPVLLTPED-----------------------------------------TNQKPYVAIIKE 155 (487)
Q Consensus 117 ~R~~Y~sf~~dG~~YrVGD~VyV~~e~-----------------------------------------~~~~pyIArI~~ 155 (487)
++.+|.+|.++|.+|++||||||.|+. ...|++||+|.+
T Consensus 633 ~~~~Y~~~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~IgqI~e 712 (1330)
T 3av4_A 633 GRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKE 712 (1330)
T ss_dssp SSEEEEEEEETTEEEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEEEEEE
T ss_pred CceeeeEEEECCEEEecCCEEEECcccccccccccccccccccccccccccchhhhcccccccccccCCCCCceEEEEEE
Confidence 478999999999999999999998761 135568999999
Q ss_pred EeeCCC------CceEEEEEEeecccccCCCCCCCCCCCCCCeeEeeCCcccccccccceecEEEEcCccccC--C-CCC
Q 011389 156 ITQSKD------GSMMVTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQL--P-NRK 226 (487)
Q Consensus 156 I~e~~d------G~~~VrVqWFYRPeEt~~~~~g~~~~~~~nELFlS~h~D~iplesI~GKC~V~~~~ey~~l--p-~~~ 226 (487)
||.+.+ +..+|+|+|||||+||.+...+ ....+.||||+|++.+++|+++|.|||.|++..++... + ...
T Consensus 713 I~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~-~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~~y~~~ 791 (1330)
T 3av4_A 713 IHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNG-SYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQG 791 (1330)
T ss_dssp CCCCEETTEECSSCCEEEEEEEECTTTSTTGGGT-TTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHHHHHHT
T ss_pred EEecCCccccCCCceEEEEEEeeChhhccccccc-ccccCcceEEeeccceecCHHHcCceEEEEecccccccccccccC
Confidence 997654 5799999999999999864322 23469999999999999999999999999999887663 1 122
Q ss_pred CCCceEEeeeeecCCcEEeecCCc
Q 011389 227 QHPGFIVQKVYDTVERKLWKLTDK 250 (487)
Q Consensus 227 ~~~~F~Cr~vYD~~~kkl~~L~dk 250 (487)
.++.|||+..||..++.|-.+|..
T Consensus 792 g~d~Fy~~~~Yd~~~k~~~~~P~~ 815 (1330)
T 3av4_A 792 GPDRFYFLEAYNSKTKNFEDPPNH 815 (1330)
T ss_dssp STTEEEESCEEETTTTEEECCCGG
T ss_pred CCCeEEEEEEecccCCeeccCchH
Confidence 468999999999999988765443
No 13
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=99.28 E-value=2.8e-12 Score=124.55 Aligned_cols=125 Identities=12% Similarity=0.106 Sum_probs=93.5
Q ss_pred cCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCC-CCceEEEEEEeecccccCC-------CCC-----CCCCC------
Q 011389 127 DGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSK-DGSMMVTGQWFYRPEEADR-------KGG-----GNWLS------ 187 (487)
Q Consensus 127 dG~~YrVGD~VyV~~e~~~~~pyIArI~~I~e~~-dG~~~VrVqWFYRPeEt~~-------~~~-----g~~~~------ 187 (487)
||+.|++||+|.|..+. .+.+.|+.|..|.-+. +..+.+.|.||+|..|+.. .+. +...+
T Consensus 49 Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 127 (232)
T 2fl7_A 49 DGLSFGKGESVIFNDNV-TETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFYKDKFF 127 (232)
T ss_dssp TCCEECTTCEEEEEETT-TTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHHHHHHH
T ss_pred CCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhhh
Confidence 89999999999998754 4566788888887665 5678999999999999964 111 00112
Q ss_pred --CCCCeeEeeCCcccccccccceecEEEEcCccccCC-CCCCCCceEEeeeeecCCcEEeecCCcch
Q 011389 188 --RDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLP-NRKQHPGFIVQKVYDTVERKLWKLTDKDY 252 (487)
Q Consensus 188 --~~~nELFlS~h~D~iplesI~GKC~V~~~~ey~~lp-~~~~~~~F~Cr~vYD~~~kkl~~L~dkdy 252 (487)
...||||+|.+.+.|-+.+|+++|+|+...+|.++. +.....+||||++||+....|..+.-.++
T Consensus 128 ~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~d~~~~~tFf~R~~cd~~~~~f~~iD~~~~ 195 (232)
T 2fl7_A 128 NEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSIDKIEDRDFLVRYACEPTAEKFVPIDIFQI 195 (232)
T ss_dssp HHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC-------CTTTEEEEEEECCTTSCSCEECCHHHH
T ss_pred cccccceEEEeccHHHHHHHhhhhheEeccHHHHHHhcccccCCceEEEEEEEcCCcCccccccHHHH
Confidence 589999999999999999999999999999999763 23346899999999997776765543444
No 14
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=99.28 E-value=1.5e-12 Score=126.76 Aligned_cols=126 Identities=17% Similarity=0.151 Sum_probs=99.7
Q ss_pred cCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCC-CCceEEEEEEeecccccCC-------CCC-----CCCCC------
Q 011389 127 DGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSK-DGSMMVTGQWFYRPEEADR-------KGG-----GNWLS------ 187 (487)
Q Consensus 127 dG~~YrVGD~VyV~~e~~~~~pyIArI~~I~e~~-dG~~~VrVqWFYRPeEt~~-------~~~-----g~~~~------ 187 (487)
||+.|++||+|.|..+. .+.+.|+.|..|.-+. +..+.+.|.||+|..|+.. .+. +...+
T Consensus 49 Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 127 (238)
T 1m4z_A 49 DGIKLGRGDSVVMHNEA-AGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYYNKLFS 127 (238)
T ss_dssp TCCEECTTCEEEEEETT-TTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHHHHHHH
T ss_pred CCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhhh
Confidence 89999999999998754 4566788888887665 5678999999999999964 111 00112
Q ss_pred --CCCCeeEeeCCcccccccccceecEEEEcCccccCC-CCCCCCceEEeeeeecCCcEEeecCCcchh
Q 011389 188 --RDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLP-NRKQHPGFIVQKVYDTVERKLWKLTDKDYE 253 (487)
Q Consensus 188 --~~~nELFlS~h~D~iplesI~GKC~V~~~~ey~~lp-~~~~~~~F~Cr~vYD~~~kkl~~L~dkdy~ 253 (487)
...||||+|.+.+.|-+.+|+++|+|+...+|.++. +.....+||||++||+....|..+.-.++.
T Consensus 128 ~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~d~~~~~tFf~R~~cd~~~~~f~~iD~~~~~ 196 (238)
T 1m4z_A 128 ETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPTGEKFVDINIEDVK 196 (238)
T ss_dssp HHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGGGCCTTTEEEEEEECCTTSCCCEECCHHHHH
T ss_pred cccccceEEEeccHHHHhHHhhhhheEeccHHHHhhhccccccCceEEEEEEEcCCcCccccccHHHHH
Confidence 589999999999999999999999999999998763 224468999999999987777665444443
No 15
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=46.19 E-value=61 Score=26.47 Aligned_cols=64 Identities=13% Similarity=0.203 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHhhhhcCCcccccccCCCCCCCCCCCCCcccccCccCCccccccCCCCCCCChhHHHHHHHHHHHH
Q 011389 349 ETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPDTAIAAVTALEKA 428 (487)
Q Consensus 349 d~~RDk~le~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~v~~~a~~iE~a 428 (487)
...|+..+++|+++|--..+........ -..+++.|..||..
T Consensus 12 ~~lR~hlv~Klv~aI~P~pdp~a~~d~r--------------------------------------m~~l~~yArkvE~~ 53 (81)
T 1kdx_A 12 QDLRSHLVHKLVQAIFPTPDPAALKDRR--------------------------------------MENLVAYAKKVEGD 53 (81)
T ss_dssp HHHHHHHHHHHHHHHSCCSSGGGGGSHH--------------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChhhhhhHH--------------------------------------HHHHHHHHHHHHHH
Confidence 7899999999999996543211100000 24688999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHhc
Q 011389 429 SHDTLSLDFQKYNQKLRQLLFNL 451 (487)
Q Consensus 429 ~~~~~~~~~~~Yk~K~Rsl~fNL 451 (487)
+|+... +...|=+-+--.+.++
T Consensus 54 ~ye~A~-srdeYY~llA~kiyki 75 (81)
T 1kdx_A 54 MYESAN-SRDEYYHLLAEKIYKI 75 (81)
T ss_dssp HHTTCS-SHHHHHHHHHHHHHHH
T ss_pred HHHHhc-cHHHHHHHHHHHHHHH
Confidence 998863 4557766666665555
No 16
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=45.36 E-value=8.3 Score=37.84 Aligned_cols=12 Identities=42% Similarity=0.437 Sum_probs=5.6
Q ss_pred hhhhhccccccc
Q 011389 40 SKRKRIKLQEEE 51 (487)
Q Consensus 40 ~~~~~~~~~~~~ 51 (487)
...+.++|.+.+
T Consensus 330 ~~~~~~~l~~~d 341 (386)
T 2ca6_A 330 STRGRGELDELD 341 (386)
T ss_dssp HHHTCCEECCCC
T ss_pred hhcCcchhhhcc
Confidence 444455554433
No 17
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=43.27 E-value=12 Score=34.10 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=32.0
Q ss_pred cCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCCC---CceEEEEEEee
Q 011389 127 DGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKD---GSMMVTGQWFY 172 (487)
Q Consensus 127 dG~~YrVGD~VyV~~e~~~~~pyIArI~~I~e~~d---G~~~VrVqWFY 172 (487)
+|..|.+||.|..+-. +-+.|-|+|........ ..-.+.|+||=
T Consensus 13 dg~~f~~GDLVWaKvk--G~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG 59 (154)
T 3llr_A 13 DGRGFGIGELVWGKLR--GFSWWPGRIVSWWMTGRSRAAEGTRWVMWFG 59 (154)
T ss_dssp SSCCCCTTCEEEECCT--TSCCEEEEEECGGGTTSCCCCTTEEEEEETT
T ss_pred cCCCCccCCEEEEecC--CCCCCCEEEecccccccccCCCCEEEEEEeC
Confidence 7889999999999874 58999999998753211 12356666663
No 18
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=38.65 E-value=18 Score=31.58 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=32.7
Q ss_pred EEcCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCC-----CC-ceEEEEEEee
Q 011389 125 EFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSK-----DG-SMMVTGQWFY 172 (487)
Q Consensus 125 ~~dG~~YrVGD~VyV~~e~~~~~pyIArI~~I~e~~-----dG-~~~VrVqWFY 172 (487)
..++..|.+||.|...-. +-|+|-|+|...-... .| ...+.|+||-
T Consensus 17 ~~~~~~~~~GdlVwaK~~--g~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg 68 (134)
T 2gfu_A 17 APTSSDFSPGDLVWAKME--GYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFD 68 (134)
T ss_dssp CCSSCCCCTTSEEEECCT--TSCCEEEECCCCSSTTCCEEESSSCEEEEEEECS
T ss_pred cCcCCCCCCCCEEEEeec--CCCCCCeeecchhhhhhhhhccCCCceEEEEECC
Confidence 346789999999999865 4899999998864321 11 2456777775
No 19
>3zzs_A Transcription attenuation protein MTRB; transcription regulation, protein engineering; HET: TRP; 1.49A {Geobacillus stearothermophilus} SCOP: b.82.5.1 PDB: 3zzq_A* 3zzl_A*
Probab=32.33 E-value=53 Score=25.67 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=35.8
Q ss_pred EEEEEeecccccCCCCCCCCCCCCCCeeEeeCCcccccccccceecEEEEc
Q 011389 166 VTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFV 216 (487)
Q Consensus 166 VrVqWFYRPeEt~~~~~g~~~~~~~nELFlS~h~D~iplesI~GKC~V~~~ 216 (487)
|.|.=+-|..||.-... ...+..||......+-.++-.|+|++.|+..
T Consensus 13 V~VigltRg~dtkfhht---EkLdkGEVmiaQftehtsaiKiRGkA~i~t~ 60 (65)
T 3zzs_A 13 VNVIGLTRGADTRFHHS---EKLDKGEVLIAQFTEHTSAIKVRGKAYIQTR 60 (65)
T ss_dssp EEEEC-CCSSSCCCCCE---EEECTTCEEEEECCSSCSEEEEESSEEEEET
T ss_pred eEEEEeeccCCccchhh---hccCCCcEEEEEeecceeEEEEeceEEEEee
Confidence 55666778888742112 1248899999999999999999999999864
No 20
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=29.24 E-value=34 Score=28.21 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=34.2
Q ss_pred eeCCeEEEcCCCCCCCCeEEEEeEEeeCCCCceEEEEEEeeccc
Q 011389 132 ELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPE 175 (487)
Q Consensus 132 rVGD~VyV~~e~~~~~pyIArI~~I~e~~dG~~~VrVqWFYRPe 175 (487)
.+||.+.|....-+.+...|.|.++.-. +|..=+.|+|+--..
T Consensus 7 ~vGDrlvv~g~~vg~~~R~GeIvEV~g~-dG~PPY~VRw~ddGH 49 (83)
T 2a7y_A 7 KVGDYLVVKGTTTERHDQHAEIIEVRSA-DGSPPYVVRWLVNGH 49 (83)
T ss_dssp CTTEEEEESCTTTSCCEEEEEEEECSCS-SSCSCEEEEETTTTE
T ss_pred cCCCEEEEecCcCCCCCcEEEEEEEECC-CCCCCEEEEecCCCc
Confidence 5899999998877788899999999754 677777899964333
No 21
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=26.72 E-value=18 Score=32.45 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=30.7
Q ss_pred cCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCCC---CceEEEEEEee
Q 011389 127 DGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKD---GSMMVTGQWFY 172 (487)
Q Consensus 127 dG~~YrVGD~VyV~~e~~~~~pyIArI~~I~e~~d---G~~~VrVqWFY 172 (487)
+|..|.+||.|...-. +-+.|-|+|.+...... ....+.|+||-
T Consensus 8 ~~~~~~~GDlVWaKvk--GyPwWPa~V~~~~~~~~~~~~~~~~~V~FFG 54 (147)
T 1khc_A 8 DDKEFGIGDLVWGKIK--GFSWWPAMVVSWKATSKRQAMPGMRWVQWFG 54 (147)
T ss_dssp SSSSCCTTCEEEEEET--TTEEEEEEEECGGGTTSCCCCTTEEEEEETT
T ss_pred CCccCcCCCEEEEecC--CcCCCCEEeccchhhhcccCCCCeEEEEEec
Confidence 5678999999999864 48899999987654221 12355666664
No 22
>3zte_A Tryptophan operon RNA-binding attenuation protein; RNA-binding protein, transcription factors, trinucleotide RE; HET: TRP; 2.41A {Bacillus licheniformis} SCOP: b.82.5.1
Probab=26.42 E-value=58 Score=26.27 Aligned_cols=48 Identities=13% Similarity=0.078 Sum_probs=35.8
Q ss_pred EEEEEeecccccCCCCCCCCCCCCCCeeEeeCCcccccccccceecEEEEc
Q 011389 166 VTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFV 216 (487)
Q Consensus 166 VrVqWFYRPeEt~~~~~g~~~~~~~nELFlS~h~D~iplesI~GKC~V~~~ 216 (487)
|.|.=+-|..||.-...- ..+..||......+-.++-.|+|++.|+..
T Consensus 21 V~VIGltRG~dtkfhHtE---kLdkGEVmIaQFTehtsaiKiRGkA~I~t~ 68 (78)
T 3zte_A 21 VNVIGLTRGTDTRFHHSE---KLDKGEVMICQFTEHTSAIKVRGEALIQTA 68 (78)
T ss_dssp EEEEEEECSSSCCEEEEE---EECTTCEEEEECCSSEEEEEEESSEEEEET
T ss_pred eEEEEeeccCCcccceeh---ccCCCcEEEEEeecceeEEEEeeeEEEEec
Confidence 555566677777321111 238899999999999999999999999874
No 23
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=26.12 E-value=32 Score=30.56 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=22.2
Q ss_pred eEEeeCCeEEEcCCCCCCCCeEEEEeEEe
Q 011389 129 NKYELEDPVLLTPEDTNQKPYVAIIKEIT 157 (487)
Q Consensus 129 ~~YrVGD~VyV~~e~~~~~pyIArI~~I~ 157 (487)
..|++||.|...-. +-|.|-|+|...-
T Consensus 21 ~~f~~GdlVwaK~~--g~p~WPa~V~~~~ 47 (153)
T 4fu6_A 21 RDFKPGDLIFAKMK--GYPHWPARVDEVP 47 (153)
T ss_dssp GGCCTTCEEEECCT--TSCCEEEEECCCC
T ss_pred cCCCCCCEEEEeCC--CCCCCCEEEeEch
Confidence 36899999999874 4899999998654
No 24
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=24.48 E-value=18 Score=30.69 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=30.5
Q ss_pred EcCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCC--CCceEEEEEEe
Q 011389 126 FDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSK--DGSMMVTGQWF 171 (487)
Q Consensus 126 ~dG~~YrVGD~VyV~~e~~~~~pyIArI~~I~e~~--dG~~~VrVqWF 171 (487)
..+..|.+||.|..+-. +-++|-|+|..+-+.. .....+.|+||
T Consensus 15 ~~~~~~~~GdlVwaK~k--GyP~WPa~V~~~p~~~~k~~~~~~~V~FF 60 (110)
T 1ri0_A 15 NRQKEYKCGDLVFAKMK--GYPHWPARIDEMPEAAVKSTANKYQVFFF 60 (110)
T ss_dssp CCSSSCCTTCEEEEEET--TEEEEEEEEECCCSSSSCCCSSCEEEEET
T ss_pred cccCCCCCCCEEEEEeC--CCCCCCEEEecccHhhcCCCCCEEEEEEe
Confidence 35678999999999864 4789999998653321 12345666666
No 25
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=24.16 E-value=79 Score=24.93 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=24.5
Q ss_pred CeEEeeCCeEEEcCCCCCCCCeEEEEeEEe
Q 011389 128 GNKYELEDPVLLTPEDTNQKPYVAIIKEIT 157 (487)
Q Consensus 128 G~~YrVGD~VyV~~e~~~~~pyIArI~~I~ 157 (487)
...|.+||.|+-+=. .+..+|-|+|.+|.
T Consensus 7 ~~~~~vgd~VmaRW~-Gd~~yYparI~Si~ 35 (66)
T 2l8d_A 7 NRKYADGEVVMGRWP-GSVLYYEVQVTSYD 35 (66)
T ss_dssp SSSSCSSCEEEEECT-TSSCEEEEEEEEEE
T ss_pred ceEeecCCEEEEEcC-CCccceEEEEEEec
Confidence 357899999999873 36889999999998
No 26
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=23.51 E-value=37 Score=28.65 Aligned_cols=43 Identities=12% Similarity=0.198 Sum_probs=30.1
Q ss_pred CeEEeeCCeEEEcCCCCCCCCeEEEEeEEee---C----CCCceEEEEEEee
Q 011389 128 GNKYELEDPVLLTPEDTNQKPYVAIIKEITQ---S----KDGSMMVTGQWFY 172 (487)
Q Consensus 128 G~~YrVGD~VyV~~e~~~~~pyIArI~~I~e---~----~dG~~~VrVqWFY 172 (487)
|..|++||.|...-. +-|+|-|+|..--. + ..+...+.|++|-
T Consensus 3 ~~~~~~GdlVwaK~~--gyP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg 52 (108)
T 2l89_A 3 DDRLNFGDRILVKAP--GYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFP 52 (108)
T ss_dssp SCCCCTTEEEEEECS--SSCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETT
T ss_pred CCcccCCCEEEEEeC--CcCCCceEecCcccCcHHHhhccCCCCeEEEEECC
Confidence 567899999999875 48999999976432 1 1224567777764
No 27
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=23.16 E-value=20 Score=30.01 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=23.2
Q ss_pred cCeEEeeCCeEEEcCCCCCCCCeEEEEeEE
Q 011389 127 DGNKYELEDPVLLTPEDTNQKPYVAIIKEI 156 (487)
Q Consensus 127 dG~~YrVGD~VyV~~e~~~~~pyIArI~~I 156 (487)
+|..|.+||.|...-. +-++|-|+|.+.
T Consensus 5 ~g~~~~~GdlVwaK~~--g~p~WPa~V~~~ 32 (110)
T 2daq_A 5 SSGKLHYKQIVWVKLG--NYRWWPAEICNP 32 (110)
T ss_dssp CCCSCCSSEEEEEECS--SSCEEEEEECCT
T ss_pred CCCCCCCCCEEEEEeC--CCCCCceeeCCh
Confidence 4667889999999865 488999999876
No 28
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=22.16 E-value=92 Score=24.01 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=23.7
Q ss_pred EEeeCCeEEEcCCCCCCCCeEEEEeEEeeC
Q 011389 130 KYELEDPVLLTPEDTNQKPYVAIIKEITQS 159 (487)
Q Consensus 130 ~YrVGD~VyV~~e~~~~~pyIArI~~I~e~ 159 (487)
.+.+|+.|++.-.+ ..+|.|.|++|...
T Consensus 3 ~f~~GedVLarwsD--G~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 3 RLWEGQDVLARWTD--GLLYLGTIKKVDSA 30 (58)
T ss_dssp SCCTTCEEEEECTT--SCEEEEEEEEEETT
T ss_pred ccccCCEEEEEecC--CCEEeEEEEEEecC
Confidence 46789999998765 78999999999754
No 29
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=22.12 E-value=95 Score=24.60 Aligned_cols=28 Identities=14% Similarity=-0.071 Sum_probs=24.3
Q ss_pred eEEeeCCeEEEcCCCCCCCCeEEEEeEEe
Q 011389 129 NKYELEDPVLLTPEDTNQKPYVAIIKEIT 157 (487)
Q Consensus 129 ~~YrVGD~VyV~~e~~~~~pyIArI~~I~ 157 (487)
..|.+||.|+-+=. .+..+|-|+|.+|.
T Consensus 11 ~~f~vgd~VmaRW~-Gd~~yYparItSit 38 (68)
T 2dig_A 11 RKFADGEVVRGRWP-GSSLYYEVEILSHD 38 (68)
T ss_dssp CSSCSSCEEEEECT-TTCCEEEEEEEEEE
T ss_pred eEeecCCEEEEEcc-CCccceEEEEEEec
Confidence 57899999999865 46889999999998
No 30
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=22.12 E-value=46 Score=27.33 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=27.8
Q ss_pred EEeeCCeEEEcCCCCCCCCeEEEEeEEeeCC--CCceEEEEEEe
Q 011389 130 KYELEDPVLLTPEDTNQKPYVAIIKEITQSK--DGSMMVTGQWF 171 (487)
Q Consensus 130 ~YrVGD~VyV~~e~~~~~pyIArI~~I~e~~--dG~~~VrVqWF 171 (487)
.|.+||.|...-. +-++|-|+|.++-... .....+.|+||
T Consensus 5 ~f~~GdlVwaK~~--g~p~WPa~V~~~~~~~~k~~~~~~~V~FF 46 (94)
T 3qby_A 5 AFKPGDLVFAKMK--GYPHWPARIDDIADGAVKPPPNKYPIFFF 46 (94)
T ss_dssp CCCTTCEEEECCT--TSCCEEEEECCCCTTSBCCCTTCEEEEET
T ss_pred cCccCCEEEEecC--CCCCCCEEEeecccccccCCCCEEEEEEE
Confidence 6889999999874 5899999998763211 11234566666
No 31
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=22.06 E-value=88 Score=24.68 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=23.7
Q ss_pred EEeeCCeEEEcCCCCCCCCeEEEEeEEeeC
Q 011389 130 KYELEDPVLLTPEDTNQKPYVAIIKEITQS 159 (487)
Q Consensus 130 ~YrVGD~VyV~~e~~~~~pyIArI~~I~e~ 159 (487)
.|++||.|+..=.+ ...|.|.|.+|...
T Consensus 13 ~f~vGddVLA~wtD--Gl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 13 KFEEGQDVLARWSD--GLFYLGTIKKINIL 40 (66)
T ss_dssp CSCTTCEEEEECTT--SCEEEEEEEEEETT
T ss_pred cccCCCEEEEEEcc--CcEEEeEEEEEccC
Confidence 68999999998544 68999999999864
Done!