BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011390
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 195 bits (495), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 185/339 (54%), Gaps = 28/339 (8%)
Query: 37 VGINYGTLGNNLPSPKKVAQLLQSTIIDKVKIYDTNPEILEAFANTGIDLIVAVENYHVS 96
+G+ YG LGNNLP P +V L +S I ++++YD N L+A N+ I +++ V V
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 97 NISTDTASADEWLSTRVLPFLPATSVVAIVVGNEYLTADGNQMMRMNPKALVQAMQNMHA 156
+++++ ++A +W+ V+ + P+ S I VGNE + G+ + + ++ AM+N++
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIP--GSDLAQY----ILPAMRNIYN 114
Query: 157 ALLARGLERKIKVTTPHSMAVLXXXXXXXXXXXXXDITPTMTSILAFLADTGAPFMVNAY 216
AL + GL+ +IKV+T VL ++ I+ FLA GAP +VN Y
Sbjct: 115 ALSSAGLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVY 174
Query: 217 PYFAYRDNPSSVNLEYALLXXXXXXXXXXXXXXXXXXLYAVHDPKGYVYTNMLDAQIDAV 276
PYF+Y NP ++L YAL V D + + Y N+ DA +DAV
Sbjct: 175 PYFSYTGNPGQISLPYALFTASGV---------------VVQDGR-FSYQNLFDAIVDAV 218
Query: 277 RTAINGLGFGNRSIKITVSESGWPSKGDSA-ATPENAKTYNTRLIERAQSNKGTPMRPKE 335
A+ + G ++ + VSESGWPS G A A+ NA+TYN LI GTP RP +
Sbjct: 219 FAALERV--GGANVAVVVSESGWPSAGGGAEASTSNAQTYNQNLIRHV--GGGTPRRPGK 274
Query: 336 NIEVFVFALFNENKKEGGVSERNFGIFNGDGSKVYQVDL 374
IE ++F +FNEN+K GG+ E+NFG+F + VYQ+
Sbjct: 275 EIEAYIFEMFNENQKAGGI-EQNFGLFYPNKQPVYQISF 312
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 181/350 (51%), Gaps = 56/350 (16%)
Query: 37 VGINYGTLGNNLPSPKKVAQLLQSTIIDKVKIYDTNPEILEAFANTGIDLIVAVENYHVS 96
+G+ YG +GNNLPS V QL +S I+ ++IY + + L A N+GI LI+ + N ++
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 97 NISTDTASADEWLSTRVLPFLPATSVVAIVVGNEYLTADGNQMMRMNPKALVQAMQNMHA 156
NI+ T++A W+ V P+ PA ++ I GNE + ++++ AM+N++A
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNE--------VQGGATQSILPAMRNLNA 112
Query: 157 ALLARGLERKIKVTT-----------PHSMAVLXXXXXXXXXXXXXDITPTMTSILAFLA 205
AL A IKV+T P S V MT + LA
Sbjct: 113 ALSAA-GLGAIKVSTSIRFDEVANSFPPSAGVFKNAY--------------MTDVARLLA 157
Query: 206 DTGAPFMVNAYPYFAYRDNPSSVNLEYALLXXXXXXXXXXXXXXXXXXLYAVHDP-KGYV 264
TGAP + N YPYFAYRDNP S++L YA V D G
Sbjct: 158 STGAPLLANVYPYFAYRDNPGSISLNYATFQPGTT----------------VRDQNNGLT 201
Query: 265 YTNMLDAQIDAVRTAINGLGFGNRSIKITVSESGWPSKGDSAATPENAKTYNTRLIERAQ 324
YT++ DA +DAV A+ G ++K+ VSESGWPS G AA+ NA+TYN LI
Sbjct: 202 YTSLFDAMVDAVYAALEKA--GAPAVKVVVSESGWPSAGGFAASAGNARTYNQGLINHVG 259
Query: 325 SNKGTPMRPKENIEVFVFALFNENKKEGGVSERNFGIFNGDGSKVYQVDL 374
GTP + +E +E ++FA+FNEN+K G +ER+FG+FN D S Y +
Sbjct: 260 G--GTP-KKREALETYIFAMFNENQKTGDATERSFGLFNPDKSPAYNIQF 306
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 187 bits (476), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 123/338 (36%), Positives = 176/338 (52%), Gaps = 32/338 (9%)
Query: 37 VGINYGTLGNNLPSPKKVAQLLQSTIIDKVKIYDTNPEILEAFANTGIDLIVAVENYHVS 96
+G+ YG NNLP+ V + +S I +++Y N L+A TGI+++V N +S
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 97 NISTDTASADEWLSTRVLPFLPATSVVAIVVGNEYLTADGNQMMRMNPKALVQAMQNMHA 156
N++ A+A W+ + + + P S + VGNE A G + LV AM+N+H
Sbjct: 61 NLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNE--VAGGAT------RNLVPAMKNVHG 111
Query: 157 ALLARGLERKIKVTTPHSMAVLXXXXXXXXXXXXXDITPTMTSILAFLADTGAPFMVNAY 216
AL+A GL IKVTT S A+L + M ++ FLA T AP M N Y
Sbjct: 112 ALVAAGLGH-IKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIY 170
Query: 217 PYFAYRDNPSSVNLEYALLXXXXXXXXXXXXXXXXXXLYAVHDPKGYVYTNMLDAQIDAV 276
PY A+ NPS++++ YAL V D Y Y N+ D +DA
Sbjct: 171 PYLAWAYNPSAMDMGYALFNASGT---------------VVRD-GAYGYQNLFDTTVDAF 214
Query: 277 RTAINGLGFGNRSIKITVSESGWPSKGDSAATPENAKTYNTRLIERAQSNKGTPMRPKEN 336
TA+ G S+K+ VSESGWPS G +AATP NA+ YN LI +GTP P
Sbjct: 215 YTAMG--KHGGSSVKLVVSESGWPSGGGTAATPANARFYNQHLINHV--GRGTPRHPGA- 269
Query: 337 IEVFVFALFNENKKEGGVSERNFGIFNGDGSKVYQVDL 374
IE ++FA+FNEN+K+ GV E+N+G+F + VY ++
Sbjct: 270 IETYIFAMFNENQKDSGV-EQNWGLFYPNMQHVYPINF 306
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 183/340 (53%), Gaps = 26/340 (7%)
Query: 37 VGINYGTLGNNLPSPKKVAQLLQSTIIDKVKIYDTNPEILEAFANTGIDLIVAVENYHVS 96
VG+ YG GNNLP +V L + + I +++IYD N +LEA + I+LI+ V N +
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 97 NISTDTASADEWLSTRVLPFLPATSVVAIVVGNEYLTADGNQMMRMNPKALVQAMQNMHA 156
++ T+ ++A W+ V F + I VGNE + N+ + ++ AM+N+H
Sbjct: 62 SL-TNPSNAKSWVQKNVRGFWSSVRFRYIAVGNE--ISPVNRGTAWLAQFVLPAMRNIHD 118
Query: 157 ALLARGLERKIKVTTPHSMAVLXXXXXXXXXXXXXDITPTMTSILAFLADTGAPFMVNAY 216
A+ + GL+ +IKV+T + ++ D+ + I+ FL+ +P + N Y
Sbjct: 119 AIRSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIY 178
Query: 217 PYFAYRDNPSSVNLEYALLXXXXXXXXXXXXXXXXXXLYAVHD-PKGYVYTNMLDAQIDA 275
PYF Y NP ++L YAL V D +G Y N+ DA +DA
Sbjct: 179 PYFTYAGNPRDISLPYALFTSPSV---------------VVWDGQRG--YKNLFDATLDA 221
Query: 276 VRTAINGLGFGNRSIKITVSESGWPSKGDSAATPENAKTYNTRLIERAQSNKGTPMRPKE 335
+ +A+ G S+++ VSESGWPS G AAT +N +TY + LI+ + +GTP RPK
Sbjct: 222 LYSALERASGG--SLEVVVSESGWPSAGAFAATFDNGRTYLSNLIQHVK--RGTPKRPKR 277
Query: 336 NIEVFVFALFNENKKEGGVSERNFGIFNGDGSKVYQVDLS 375
IE ++FA+F+ENKK+ V E++FG+F + + Y ++ S
Sbjct: 278 AIETYLFAMFDENKKQPEV-EKHFGLFFPNKWQKYNLNFS 316
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 178 bits (451), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 174/340 (51%), Gaps = 26/340 (7%)
Query: 37 VGINYGTLGNNLPSPKKVAQLLQSTIIDKVKIYDTNPEILEAFANTGIDLIVAVENYHVS 96
+G+ YG + NNLPS + V +L + I K++IY + + A + I++I+ V N +
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 97 NISTDTASADEWLSTRVLPFLPATSVVAIVVGNEYLTADGNQMMRMNPKALVQAMQNMHA 156
++ + ++A+ W+ + P I VGNE D + + + AM+N++
Sbjct: 63 ALA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNE---VDPGRESGKYARFVGPAMENIYN 118
Query: 157 ALLARGLERKIKVTTPHSMAVLXXXXXXXXXXXXXDITPTMTSILAFLADTGAPFMVNAY 216
AL + GL+ +IKV+T +L + + I+ FLA P + N Y
Sbjct: 119 ALSSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIY 178
Query: 217 PYFAYRDNPSSVNLEYALLXXXXXXXXXXXXXXXXXXLYAVHDPKGYVYTNMLDAQIDAV 276
PYF + DN ++V L YAL Y N+ DA +D++
Sbjct: 179 PYFGHIDNTNAVPLSYALFNQQRRNDTG--------------------YQNLFDALVDSM 218
Query: 277 RTAINGLGFGNRSIKITVSESGWPSKGDSAATPENAKTYNTRLIERAQSNKGTPMRPKEN 336
A LG ++I+I VSESGWPS+G AAT +NA+TY T LI + GTP +P +
Sbjct: 219 YFATEKLG--GQNIEIIVSESGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKT 276
Query: 337 IEVFVFALFNENKKEGGVSERNFGIFNGDGSKVYQVDLSC 376
IE ++FA+F+EN+K+G SE++FG+FN D YQ++ +
Sbjct: 277 IETYLFAMFDENEKKGEASEKHFGLFNPDQRPKYQLNFNL 316
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/340 (31%), Positives = 173/340 (50%), Gaps = 26/340 (7%)
Query: 37 VGINYGTLGNNLPSPKKVAQLLQSTIIDKVKIYDTNPEILEAFANTGIDLIVAVENYHVS 96
+G+ YG + NNLPS + V +L + I K++IY + + A + I++I+ V N +
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 97 NISTDTASADEWLSTRVLPFLPATSVVAIVVGNEYLTADGNQMMRMNPKALVQAMQNMHA 156
++ + ++A+ W+ + P I VGNE D + + + AM+N++
Sbjct: 63 ALA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNE---VDPGRESGKYARFVGPAMENIYN 118
Query: 157 ALLARGLERKIKVTTPHSMAVLXXXXXXXXXXXXXDITPTMTSILAFLADTGAPFMVNAY 216
AL + GL+ +IKV+T +L + + I+ FLA P + N Y
Sbjct: 119 ALSSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIY 178
Query: 217 PYFAYRDNPSSVNLEYALLXXXXXXXXXXXXXXXXXXLYAVHDPKGYVYTNMLDAQIDAV 276
PYF + DN ++V L YAL Y N+ DA +D++
Sbjct: 179 PYFGHIDNTNAVPLSYALFNQQRRNDTG--------------------YQNLFDALVDSM 218
Query: 277 RTAINGLGFGNRSIKITVSESGWPSKGDSAATPENAKTYNTRLIERAQSNKGTPMRPKEN 336
A LG ++I+I VS SGWPS+G AAT +NA+TY T LI + GTP +P +
Sbjct: 219 YFATEKLG--GQNIEIIVSASGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKT 276
Query: 337 IEVFVFALFNENKKEGGVSERNFGIFNGDGSKVYQVDLSC 376
IE ++FA+F+EN+K+G SE++FG+FN D YQ++ +
Sbjct: 277 IETYLFAMFDENEKKGEASEKHFGLFNPDQRPKYQLNFNL 316
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 400 WCVAKPHADEKVLQSVLDFCCGPGGVDCREIDRSGGCFEPEKLHAHASYAMNAYYQMHGR 459
WCV KP + L +++ C G+DC I G CFEP + AHA+Y MN YYQ GR
Sbjct: 13 WCVPKPGVSDDQLTGNINYACS-QGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGR 71
Query: 460 NYWNCDFKGTGLVTFSDPSYGTCRY 484
N WNCDF T +T ++PSYG C +
Sbjct: 72 NSWNCDFSQTATLTNTNPSYGACNF 96
>pdb|1G9K|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
pdb|1O0Q|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 1 Mm Edta
pdb|1O0T|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5 Mm Edta (5
Days)
pdb|1OM6|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5mm Edta (2
Months)
pdb|1OM7|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Soaked In 85 Mm Edta
pdb|1OM8|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallyzed With 10 Mm Edta
pdb|1OMJ|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
Length = 463
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%)
Query: 410 KVLQSVLDFCCGPGGVDCREIDRSGGCFEPEKLHAHASYAMNAYYQMHGRNYWNCDFKGT 469
K + DF G +D I + GG + HA A+ +Y+Q DF G
Sbjct: 384 KAADIIKDFQSGFDKIDLTAITKLGGLNFVDAFTGHAGDAIVSYHQASNAGSLQVDFSGQ 443
Query: 470 GLVTF 474
G+ F
Sbjct: 444 GVADF 448
>pdb|1H71|P Chain P, Psychrophilic Protease From Pseudoalteromonas 'tac Ii 18'
Length = 463
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%)
Query: 410 KVLQSVLDFCCGPGGVDCREIDRSGGCFEPEKLHAHASYAMNAYYQMHGRNYWNCDFKGT 469
K + DF G +D I + GG + HA A+ +Y+Q DF G
Sbjct: 384 KAADIIKDFQSGFDKIDLTAITKLGGLNFVDAFTGHAGDAIVSYHQASNAGSLQVDFSGQ 443
Query: 470 GLVTF 474
G+ F
Sbjct: 444 GVADF 448
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,849,448
Number of Sequences: 62578
Number of extensions: 549197
Number of successful extensions: 1168
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1130
Number of HSP's gapped (non-prelim): 9
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)