Query 011390
Match_columns 487
No_of_seqs 281 out of 1692
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 00:49:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 1E-85 2.2E-90 669.1 19.3 310 37-374 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 8.6E-44 1.9E-48 345.8 22.6 250 33-366 42-305 (305)
3 smart00768 X8 Possibly involve 99.9 2.8E-28 6E-33 203.8 8.1 85 399-484 1-85 (85)
4 PF07983 X8: X8 domain; Inter 99.9 4.7E-22 1E-26 163.5 6.1 69 399-471 1-78 (78)
5 PF03198 Glyco_hydro_72: Gluca 99.3 1.3E-11 2.8E-16 124.9 13.4 162 37-221 30-219 (314)
6 PF07745 Glyco_hydro_53: Glyco 98.9 1.3E-07 2.8E-12 97.8 19.8 243 51-369 26-326 (332)
7 COG3867 Arabinogalactan endo-1 98.0 9E-05 1.9E-09 74.9 14.0 252 51-372 65-388 (403)
8 PF00150 Cellulase: Cellulase 97.9 0.00042 9E-09 68.3 16.8 131 35-170 9-171 (281)
9 PRK10150 beta-D-glucuronidase; 97.7 0.0069 1.5E-07 67.7 23.3 237 54-372 318-585 (604)
10 PF11790 Glyco_hydro_cc: Glyco 97.2 0.014 3.1E-07 57.8 15.4 167 120-368 64-232 (239)
11 smart00633 Glyco_10 Glycosyl h 97.1 0.038 8.3E-07 55.0 18.4 66 290-370 183-249 (254)
12 TIGR03356 BGL beta-galactosida 93.9 8.3 0.00018 41.6 20.6 81 51-132 56-163 (427)
13 PF02836 Glyco_hydro_2_C: Glyc 89.0 3.5 7.7E-05 41.7 10.7 96 36-131 17-132 (298)
14 PRK09936 hypothetical protein; 84.3 14 0.0003 38.1 11.7 59 35-93 20-95 (296)
15 PF03662 Glyco_hydro_79n: Glyc 84.2 1.4 3.1E-05 45.8 4.8 84 75-160 114-202 (319)
16 PF01229 Glyco_hydro_39: Glyco 81.4 27 0.00059 38.2 13.7 246 57-369 48-350 (486)
17 cd02875 GH18_chitobiase Chitob 75.0 16 0.00035 38.4 9.3 135 62-220 55-191 (358)
18 PF02449 Glyco_hydro_42: Beta- 72.6 10 0.00023 39.8 7.1 83 51-133 12-140 (374)
19 PF00232 Glyco_hydro_1: Glycos 66.8 2.3 5E-05 46.1 0.7 121 51-175 60-223 (455)
20 PF00925 GTP_cyclohydro2: GTP 63.2 10 0.00023 35.6 4.3 37 54-90 131-167 (169)
21 smart00481 POLIIIAc DNA polyme 60.7 32 0.00069 26.7 6.1 43 49-91 15-62 (67)
22 COG4782 Uncharacterized protei 60.5 29 0.00063 36.8 7.4 57 265-326 125-187 (377)
23 TIGR00505 ribA GTP cyclohydrol 56.0 18 0.00038 34.8 4.6 33 55-87 131-163 (191)
24 PRK00393 ribA GTP cyclohydrola 55.3 18 0.00039 34.9 4.6 33 55-87 134-166 (197)
25 PRK13511 6-phospho-beta-galact 50.6 26 0.00057 38.3 5.4 46 51-96 56-120 (469)
26 cd02874 GH18_CFLE_spore_hydrol 50.0 69 0.0015 32.6 8.1 84 72-163 47-138 (313)
27 cd00598 GH18_chitinase-like Th 48.6 58 0.0012 30.6 6.8 85 74-163 53-142 (210)
28 cd00641 GTP_cyclohydro2 GTP cy 45.7 31 0.00068 33.1 4.5 33 55-87 133-165 (193)
29 PRK12485 bifunctional 3,4-dihy 45.7 24 0.00052 37.5 4.1 33 54-87 330-362 (369)
30 cd04743 NPD_PKS 2-Nitropropane 41.8 1.7E+02 0.0036 30.7 9.4 79 35-131 56-134 (320)
31 PRK14019 bifunctional 3,4-dihy 41.7 30 0.00066 36.8 4.1 32 55-87 328-359 (367)
32 PRK06552 keto-hydroxyglutarate 41.7 2.6E+02 0.0057 27.3 10.3 89 49-159 117-210 (213)
33 PF05990 DUF900: Alpha/beta hy 39.8 1.4E+02 0.0029 29.5 8.1 56 265-325 27-88 (233)
34 PLN03059 beta-galactosidase; P 37.9 6.4E+02 0.014 30.0 14.1 114 54-174 64-223 (840)
35 PRK09314 bifunctional 3,4-dihy 37.8 41 0.0009 35.4 4.3 35 53-87 299-334 (339)
36 PLN02998 beta-glucosidase 37.3 56 0.0012 36.1 5.4 45 52-96 85-148 (497)
37 PRK08815 GTP cyclohydrolase; P 37.2 45 0.00099 35.6 4.5 36 55-90 305-340 (375)
38 cd06545 GH18_3CO4_chitinase Th 37.2 1E+02 0.0022 30.5 6.8 81 74-163 50-133 (253)
39 PRK09318 bifunctional 3,4-dihy 37.1 46 0.001 35.7 4.6 38 54-91 319-356 (387)
40 PLN02831 Bifunctional GTP cycl 36.5 46 0.00099 36.4 4.5 37 54-90 372-408 (450)
41 COG0621 MiaB 2-methylthioadeni 36.3 1.7E+02 0.0038 31.9 8.8 134 34-221 193-337 (437)
42 PRK09319 bifunctional 3,4-dihy 35.9 48 0.001 37.1 4.6 38 54-91 342-379 (555)
43 PRK09311 bifunctional 3,4-dihy 35.8 49 0.0011 35.7 4.5 35 54-88 338-372 (402)
44 PF14488 DUF4434: Domain of un 35.1 62 0.0013 30.4 4.7 19 74-92 69-87 (166)
45 PRK09593 arb 6-phospho-beta-gl 34.6 1.7E+02 0.0037 32.1 8.6 46 51-96 75-140 (478)
46 COG3934 Endo-beta-mannanase [C 33.6 1.7E+02 0.0038 32.4 8.1 91 106-221 123-213 (587)
47 cd01543 PBP1_XylR Ligand-bindi 33.1 2.8E+02 0.0061 26.5 9.2 129 51-204 97-238 (265)
48 PRK09525 lacZ beta-D-galactosi 33.0 1.3E+02 0.0029 36.3 8.0 95 37-131 353-463 (1027)
49 COG4213 XylF ABC-type xylose t 32.6 74 0.0016 33.3 5.0 75 74-172 176-250 (341)
50 TIGR01579 MiaB-like-C MiaB-lik 32.3 2E+02 0.0044 30.6 8.6 59 144-221 272-330 (414)
51 PRK13347 coproporphyrinogen II 32.0 66 0.0014 34.9 4.9 21 144-164 262-282 (453)
52 KOG0626 Beta-glucosidase, lact 31.9 92 0.002 34.7 5.9 72 284-365 404-486 (524)
53 PRK09589 celA 6-phospho-beta-g 31.0 1.7E+02 0.0038 32.1 7.9 46 51-96 69-134 (476)
54 PRK14334 (dimethylallyl)adenos 30.8 2.8E+02 0.0061 29.9 9.5 57 144-219 271-327 (440)
55 TIGR03632 bact_S11 30S ribosom 30.7 1.1E+02 0.0024 26.8 5.1 36 52-87 50-90 (108)
56 PLN02814 beta-glucosidase 30.5 84 0.0018 34.8 5.4 46 51-96 79-143 (504)
57 COG1433 Uncharacterized conser 30.1 1.1E+02 0.0023 27.6 5.0 39 53-91 56-94 (121)
58 COG0807 RibA GTP cyclohydrolas 30.1 76 0.0016 30.8 4.4 38 55-92 133-170 (193)
59 PRK15014 6-phospho-beta-glucos 28.1 1.8E+02 0.0038 32.1 7.4 46 51-96 71-136 (477)
60 PRK07198 hypothetical protein; 27.9 51 0.0011 35.5 3.0 37 55-91 338-375 (418)
61 PF02055 Glyco_hydro_30: O-Gly 27.6 2.2E+02 0.0048 31.5 8.0 94 81-174 166-282 (496)
62 COG4669 EscJ Type III secretor 27.5 2.2E+02 0.0048 28.7 7.1 66 50-133 32-97 (246)
63 PF13547 GTA_TIM: GTA TIM-barr 27.2 81 0.0018 32.5 4.2 83 120-217 18-108 (299)
64 smart00636 Glyco_18 Glycosyl h 26.8 2.1E+02 0.0046 29.1 7.4 125 76-220 57-188 (334)
65 PLN02849 beta-glucosidase 26.7 1.1E+02 0.0024 33.9 5.5 46 51-96 81-145 (503)
66 cd02872 GH18_chitolectin_chito 26.5 2E+02 0.0042 29.9 7.1 116 82-220 69-192 (362)
67 KOG0093 GTPase Rab3, small G p 26.5 1E+02 0.0022 29.1 4.4 59 65-131 71-136 (193)
68 PF00834 Ribul_P_3_epim: Ribul 26.2 4.1E+02 0.0089 25.7 8.8 97 50-168 68-170 (201)
69 TIGR03628 arch_S11P archaeal r 25.9 1.5E+02 0.0032 26.5 5.1 36 52-87 53-101 (114)
70 PF13721 SecD-TM1: SecD export 25.9 2.1E+02 0.0045 24.7 6.0 38 32-69 29-66 (101)
71 KOG0078 GTP-binding protein SE 25.1 1.2E+02 0.0027 29.7 4.9 81 34-133 42-129 (207)
72 PF00331 Glyco_hydro_10: Glyco 25.0 1.1E+02 0.0024 31.6 4.9 74 290-370 234-311 (320)
73 PRK10340 ebgA cryptic beta-D-g 24.3 2.6E+02 0.0057 33.8 8.4 96 37-132 337-451 (1021)
74 TIGR01125 MiaB-like tRNA modif 23.9 5.1E+02 0.011 27.8 9.9 59 144-221 269-327 (430)
75 PF13377 Peripla_BP_3: Peripla 23.6 2.6E+02 0.0057 24.4 6.6 121 55-203 1-133 (160)
76 PF00150 Cellulase: Cellulase 23.6 2.7E+02 0.0058 27.0 7.1 68 272-351 63-134 (281)
77 PRK09852 cryptic 6-phospho-bet 22.7 3.1E+02 0.0068 30.2 8.0 46 51-96 73-138 (474)
78 PRK13586 1-(5-phosphoribosyl)- 22.4 6.2E+02 0.013 25.0 9.4 70 49-134 30-108 (232)
79 PRK09607 rps11p 30S ribosomal 22.1 1.9E+02 0.0041 26.5 5.1 36 52-87 60-108 (132)
80 TIGR03822 AblA_like_2 lysine-2 21.7 5.1E+02 0.011 26.8 9.0 39 54-92 158-206 (321)
81 PRK14328 (dimethylallyl)adenos 21.7 4E+02 0.0087 28.7 8.6 59 144-221 281-339 (439)
82 PRK14339 (dimethylallyl)adenos 21.5 4.7E+02 0.01 28.1 9.0 58 144-220 264-321 (420)
83 cd06598 GH31_transferase_CtsZ 21.5 8.3E+02 0.018 25.0 10.5 70 144-221 23-96 (317)
84 PF00411 Ribosomal_S11: Riboso 21.4 1.6E+02 0.0034 25.8 4.4 36 53-88 51-91 (110)
85 CHL00041 rps11 ribosomal prote 21.1 2.1E+02 0.0046 25.4 5.2 36 52-87 63-103 (116)
86 PRK14330 (dimethylallyl)adenos 20.3 4.3E+02 0.0093 28.4 8.4 59 144-221 274-332 (434)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=1e-85 Score=669.12 Aligned_cols=310 Identities=51% Similarity=0.904 Sum_probs=256.1
Q ss_pred ceEEeCCCCCCCCCHHHHHHHHhhCCCCEEEEecCChHHHHHHHhcCCeEEEEeccCcccccccChHHHHHHHhhccccc
Q 011390 37 VGINYGTLGNNLPSPKKVAQLLQSTIIDKVKIYDTNPEILEAFANTGIDLIVAVENYHVSNISTDTASADEWLSTRVLPF 116 (487)
Q Consensus 37 ~GvnYg~~~~nlps~~~v~~llk~~~~~~VRiY~~d~~vL~A~~~tgi~V~vGv~n~~l~~~a~~~~~a~~wv~~~V~~~ 116 (487)
||||||+.|+|+|+|.+|+++||+++|++||||++|+++|+|++++||+|++||+|++++++++++..|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecccccccCCCccccCChHHHHHHHHHHHHHHHHCCCCCceEEecccccccccccCCCCCcccCCCcchh
Q 011390 117 LPATSVVAIVVGNEYLTADGNQMMRMNPKALVQAMQNMHAALLARGLERKIKVTTPHSMAVLASSFPPSASTFAPDITPT 196 (487)
Q Consensus 117 ~p~~~I~~I~VGNEvl~~~~~~~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVtT~~~~~vl~~s~pPS~g~F~~~~~~~ 196 (487)
+|.++|++|+||||++... . ...|||+|+++|++|++.||+++|||+|+++++++..+||||+|.|++++...
T Consensus 81 ~~~~~i~~i~VGnEv~~~~---~----~~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~ 153 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGT---D----NAYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASV 153 (310)
T ss_dssp TTTSEEEEEEEEES-TCCS---G----GGGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHH
T ss_pred CcccceeeeecccccccCc---c----ceeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhh
Confidence 9999999999999999864 1 22799999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhcCCCccccCCCCCccCCCCCCCCcccccccCCCCCccccCCCCCCCCceeeecCCCceechHHHHHHHHH
Q 011390 197 MTSILAFLADTGAPFMVNAYPYFAYRDNPSSVNLEYALLGGSAGVGINASSSGSGGGLYAVHDPKGYVYTNMLDAQIDAV 276 (487)
Q Consensus 197 ~~~~l~fL~~~~d~~~vN~yPyf~~~~~p~~~~l~yalf~~~~~~~~~~~~~~~~~~~~~~~d~~~~~y~n~fda~~dav 276 (487)
|+++++||.++++|||+|+||||.+..+|..++|+||+|+++.. ++|+ +++|+||||+|+|++
T Consensus 154 ~~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~----------------~~D~-~~~y~nlfDa~~da~ 216 (310)
T PF00332_consen 154 MDPLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSG----------------VVDG-GLAYTNLFDAMVDAV 216 (310)
T ss_dssp HHHHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-----------------SEET-TEEESSHHHHHHHHH
T ss_pred hhHHHHHhhccCCCceeccchhhhccCCcccCCccccccccccc----------------cccc-chhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998776 5566 889999999999999
Q ss_pred HHHHHhcCCCCCceeEEEeeccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceEEEEEeecCCCCCCCCCC
Q 011390 277 RTAINGLGFGNRSIKITVSESGWPSKGDSAATPENAKTYNTRLIERAQSNKGTPMRPKENIEVFVFALFNENKKEGGVSE 356 (487)
Q Consensus 277 ~~a~~k~g~~~~~~~vvVtETGWPS~G~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~i~~yiF~~FDE~wK~g~~~E 356 (487)
++||+|+|+++ ++|+||||||||+|+.+|+++||++|++++++++. .|||+||+..+++||||||||+||+++.+|
T Consensus 217 ~~a~~~~g~~~--~~vvv~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E 292 (310)
T PF00332_consen 217 YAAMEKLGFPN--VPVVVGETGWPSAGDPGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVE 292 (310)
T ss_dssp HHHHHTTT-TT----EEEEEE---SSSSTTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGG
T ss_pred HHHHHHhCCCC--ceeEEeccccccCCCCCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCccc
Confidence 99999999998 99999999999999999999999999999999997 699999999999999999999999987799
Q ss_pred CceeeccCCCCeeeeeee
Q 011390 357 RNFGIFNGDGSKVYQVDL 374 (487)
Q Consensus 357 ~~wGlf~~d~~~ky~l~~ 374 (487)
||||||++||++||+|+|
T Consensus 293 ~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 293 RHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp GG--SB-TTSSBSS----
T ss_pred ceeeeECCCCCeecCCCC
Confidence 999999999999999986
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.6e-44 Score=345.77 Aligned_cols=250 Identities=22% Similarity=0.387 Sum_probs=203.2
Q ss_pred cCccceEEeCCCCCC--CCCHHHHHHHHhhC-C-CCEEEEecCCh----HHHHHHHhcCCeEEEEeccCcccccccChHH
Q 011390 33 NVAGVGINYGTLGNN--LPSPKKVAQLLQST-I-IDKVKIYDTNP----EILEAFANTGIDLIVAVENYHVSNISTDTAS 104 (487)
Q Consensus 33 ~~~~~GvnYg~~~~n--lps~~~v~~llk~~-~-~~~VRiY~~d~----~vL~A~~~tgi~V~vGv~n~~l~~~a~~~~~ 104 (487)
+.+..+|+||++.++ |++.+++..+|+.. . ...||+|.+|| +|++|+...|++|+||||..+ .+ ...
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~td--d~---~~~ 116 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTD--DI---HDA 116 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeecc--ch---hhh
Confidence 456789999999887 79999998776542 2 34999999887 678899999999999999532 11 122
Q ss_pred HHHHHhhcccccCCCceEEEEEecccccccCCCccccCChHHHHHHHHHHHHHHHHCCCCCceEEecccccccccccCCC
Q 011390 105 ADEWLSTRVLPFLPATSVVAIVVGNEYLTADGNQMMRMNPKALVQAMQNMHAALLARGLERKIKVTTPHSMAVLASSFPP 184 (487)
Q Consensus 105 a~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~~~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVtT~~~~~vl~~s~pP 184 (487)
.+.-+...+++++.+..|++|+||||+|+|+ +.+ +++|+.+|..+|.+|+++|++ .||+|+++|.++.+.
T Consensus 117 ~~~til~ay~~~~~~d~v~~v~VGnEal~r~---~~t--asql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n--- 186 (305)
T COG5309 117 VEKTILSAYLPYNGWDDVTTVTVGNEALNRN---DLT--ASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN--- 186 (305)
T ss_pred HHHHHHHHHhccCCCCceEEEEechhhhhcC---CCC--HHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeCC---
Confidence 3334666788888899999999999999996 444 999999999999999999997 569999999998762
Q ss_pred CCcccCCCcchhHHHHHHHHHhcCCCccccCCCCCccCCCCCCCCcccccccCCCCCccccCCCCCCCCceeeecCCCce
Q 011390 185 SASTFAPDITPTMTSILAFLADTGAPFMVNAYPYFAYRDNPSSVNLEYALLGGSAGVGINASSSGSGGGLYAVHDPKGYV 264 (487)
Q Consensus 185 S~g~F~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~~~~~p~~~~l~yalf~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 264 (487)
|+ |+++.||+|+|.||||+.+.- .+. .
T Consensus 187 ------p~-----------l~~~SDfia~N~~aYwd~~~~---------------------------------a~~---~ 213 (305)
T COG5309 187 ------PE-----------LCQASDFIAANAHAYWDGQTV---------------------------------ANA---A 213 (305)
T ss_pred ------hH-----------Hhhhhhhhhcccchhccccch---------------------------------hhh---h
Confidence 23 688999999999999998531 111 0
Q ss_pred echHHHHHHHHHHHHHHhcCCCCCceeEEEeeccCCCCCCC----CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceEE
Q 011390 265 YTNMLDAQIDAVRTAINGLGFGNRSIKITVSESGWPSKGDS----AATPENAKTYNTRLIERAQSNKGTPMRPKENIEVF 340 (487)
Q Consensus 265 y~n~fda~~dav~~a~~k~g~~~~~~~vvVtETGWPS~G~~----~as~~na~~y~~~li~~~~~~~Gtp~rpg~~i~~y 340 (487)
+ .++-.|+..|+.++ | .+ |+++|+||||||+|.. .||++||+.|.|++++.+++ .++++|
T Consensus 214 ~-~f~~~q~e~vqsa~---g-~~--k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~f 277 (305)
T COG5309 214 G-TFLLEQLERVQSAC---G-TK--KTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVF 277 (305)
T ss_pred h-HHHHHHHHHHHHhc---C-CC--ccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEE
Confidence 1 24556788888775 3 23 8999999999999987 69999999999999999876 359999
Q ss_pred EEEeecCCCCC-CC-CCCCceeeccCCC
Q 011390 341 VFALFNENKKE-GG-VSERNFGIFNGDG 366 (487)
Q Consensus 341 iF~~FDE~wK~-g~-~~E~~wGlf~~d~ 366 (487)
+||+|||+||. |. ++|+|||+++.|+
T Consensus 278 vfeAFdd~WK~~~~y~VEkywGv~~s~~ 305 (305)
T COG5309 278 VFEAFDDDWKADGSYGVEKYWGVLSSDR 305 (305)
T ss_pred EeeeccccccCccccchhhceeeeccCC
Confidence 99999999995 44 7899999998774
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.95 E-value=2.8e-28 Score=203.82 Aligned_cols=85 Identities=52% Similarity=1.108 Sum_probs=82.9
Q ss_pred eeEEecCCCChHHHHHHhhcccCCCCCCccccCCCCccCCCcchhhhHhHHHHHHHHHhCCCCCCCCCCcceEEEecCCC
Q 011390 399 VWCVAKPHADEKVLQSVLDFCCGPGGVDCREIDRSGGCFEPEKLHAHASYAMNAYYQMHGRNYWNCDFKGTGLVTFSDPS 478 (487)
Q Consensus 399 ~~CV~k~~~~~~~l~~~ld~aCg~~~~dC~~I~~~g~C~~p~t~~~~aSya~N~YYq~~~~~~~aCdF~G~a~~~~~dps 478 (487)
+|||+|+++++++||++|||||+++ +||++|++||.||.|+++++|||||||+|||++++..++|||+|+|+++++|||
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~-~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCC-CCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 5999999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred CCceee
Q 011390 479 YGTCRY 484 (487)
Q Consensus 479 ~~~C~f 484 (487)
+++|+|
T Consensus 80 ~~~C~~ 85 (85)
T smart00768 80 TGSCKF 85 (85)
T ss_pred CCccCC
Confidence 999987
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.85 E-value=4.7e-22 Score=163.54 Aligned_cols=69 Identities=55% Similarity=1.098 Sum_probs=59.5
Q ss_pred eeEEecCCCChHHHHHHhhcccCCCCCCccccCCCCc---------cCCCcchhhhHhHHHHHHHHHhCCCCCCCCCCcc
Q 011390 399 VWCVAKPHADEKVLQSVLDFCCGPGGVDCREIDRSGG---------CFEPEKLHAHASYAMNAYYQMHGRNYWNCDFKGT 469 (487)
Q Consensus 399 ~~CV~k~~~~~~~l~~~ld~aCg~~~~dC~~I~~~g~---------C~~p~t~~~~aSya~N~YYq~~~~~~~aCdF~G~ 469 (487)
+|||+++++++++|+++|||||+++++||++|+++|. |+. ++|||||||+|||++++...+|||+|+
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~----~~~lSya~N~YY~~~~~~~~~C~F~G~ 76 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSP----RQHLSYAFNQYYQKQGRNSSACDFSGN 76 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-C----CHHHHHHHHHHHHHHTSSCCG-SS-ST
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCH----HHHHHHHHHHHHHHcCCCCCcCCCCCC
Confidence 6999999999999999999999998899999999998 988 999999999999999999999999999
Q ss_pred eE
Q 011390 470 GL 471 (487)
Q Consensus 470 a~ 471 (487)
|+
T Consensus 77 at 78 (78)
T PF07983_consen 77 AT 78 (78)
T ss_dssp EE
T ss_pred CC
Confidence 96
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.33 E-value=1.3e-11 Score=124.93 Aligned_cols=162 Identities=22% Similarity=0.384 Sum_probs=90.3
Q ss_pred ceEEeCCCCC-------C-CCCHH---HHHHHHhhCCCCEEEEecCCh-----HHHHHHHhcCCeEEEEeccCccccccc
Q 011390 37 VGINYGTLGN-------N-LPSPK---KVAQLLQSTIIDKVKIYDTNP-----EILEAFANTGIDLIVAVENYHVSNIST 100 (487)
Q Consensus 37 ~GvnYg~~~~-------n-lps~~---~v~~llk~~~~~~VRiY~~d~-----~vL~A~~~tgi~V~vGv~n~~l~~~a~ 100 (487)
.||.|-+.++ | |-.++ +.+.+||.+|+..||+|..|+ ..+++|++.||-|++.|..... ++.+
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~~-sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPNG-SINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTTB-S--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCCc-cccC
Confidence 7999988776 2 22222 346788999999999998885 7999999999999999975422 2221
Q ss_pred ChHHHHHH-------HhhcccccCCCceEEEEEecccccccCCCccccCChHHHHHHHHHHHHHHHHCCCCCceEEeccc
Q 011390 101 DTASADEW-------LSTRVLPFLPATSVVAIVVGNEYLTADGNQMMRMNPKALVQAMQNMHAALLARGLERKIKVTTPH 173 (487)
Q Consensus 101 ~~~~a~~w-------v~~~V~~~~p~~~I~~I~VGNEvl~~~~~~~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVtT~~ 173 (487)
.. -+..| ..+-|..|..-.|+.+..+|||+++....... ++.+-.+++++|+-+++.+++ +|+|+-+-
T Consensus 109 ~~-P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~a---ap~vKAavRD~K~Yi~~~~~R-~IPVGYsa 183 (314)
T PF03198_consen 109 SD-PAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNA---APYVKAAVRDMKAYIKSKGYR-SIPVGYSA 183 (314)
T ss_dssp TS-------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGG---HHHHHHHHHHHHHHHHHSSS-----EEEEE
T ss_pred CC-CcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCccc---HHHHHHHHHHHHHHHHhcCCC-CCceeEEc
Confidence 11 11233 22224444444789999999999986422223 888999999999999999997 49998653
Q ss_pred ccccccccCCCCCcccCCCcchhHHHHHHHHH-----hcCCCccccCCCCCcc
Q 011390 174 SMAVLASSFPPSASTFAPDITPTMTSILAFLA-----DTGAPFMVNAYPYFAY 221 (487)
Q Consensus 174 ~~~vl~~s~pPS~g~F~~~~~~~~~~~l~fL~-----~~~d~~~vN~yPyf~~ 221 (487)
+- + .+....+.++|. +..|++++|.|-|...
T Consensus 184 aD-~----------------~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~ 219 (314)
T PF03198_consen 184 AD-D----------------AEIRQDLANYLNCGDDDERIDFFGLNSYEWCGD 219 (314)
T ss_dssp --------------------TTTHHHHHHHTTBTT-----S-EEEEE----SS
T ss_pred cC-C----------------hhHHHHHHHHhcCCCcccccceeeeccceecCC
Confidence 31 1 122445667775 4679999999987754
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.89 E-value=1.3e-07 Score=97.76 Aligned_cols=243 Identities=15% Similarity=0.220 Sum_probs=121.8
Q ss_pred HHHHHHHHhhCCCCEEE--Eec-C------C-hHH---HHHHHhcCCeEEEEeccCc---------cc-cccc-ChH---
Q 011390 51 PKKVAQLLQSTIIDKVK--IYD-T------N-PEI---LEAFANTGIDLIVAVENYH---------VS-NIST-DTA--- 103 (487)
Q Consensus 51 ~~~v~~llk~~~~~~VR--iY~-~------d-~~v---L~A~~~tgi~V~vGv~n~~---------l~-~~a~-~~~--- 103 (487)
..++.++||..|++.|| +|. + | ..+ .+.+++.|++|+|-.-=.+ ++ .... +.+
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 46789999999987555 552 1 1 133 3556689999999984211 11 1111 111
Q ss_pred -HHHHHHhhcccccC-CCceEEEEEeccccccc--C-CCccccCChHHHHHHHHHHHHHHHHCCCCCceEEecccccccc
Q 011390 104 -SADEWLSTRVLPFL-PATSVVAIVVGNEYLTA--D-GNQMMRMNPKALVQAMQNMHAALLARGLERKIKVTTPHSMAVL 178 (487)
Q Consensus 104 -~a~~wv~~~V~~~~-p~~~I~~I~VGNEvl~~--~-~~~~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVtT~~~~~vl 178 (487)
+..++.++-+..+- -...+..|-||||.-.. + .+. ..+.+.+...++.-.+++|+.+- .+||-.-.. ...
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~--~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~-~~~ 180 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGK--PSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLA-NGG 180 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTC--TT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES--TT
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCC--ccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEC-CCC
Confidence 11122222121111 24678899999997543 1 011 11367888888888888887554 355532111 100
Q ss_pred cccCCCCCcccCCCcchhHHHHHHHHHh---cCCCccccCCCCCccCCCCCCCCcccccccCCCCCccccCCCCCCCCce
Q 011390 179 ASSFPPSASTFAPDITPTMTSILAFLAD---TGAPFMVNAYPYFAYRDNPSSVNLEYALLGGSAGVGINASSSGSGGGLY 255 (487)
Q Consensus 179 ~~s~pPS~g~F~~~~~~~~~~~l~fL~~---~~d~~~vN~yPyf~~~~~p~~~~l~yalf~~~~~~~~~~~~~~~~~~~~ 255 (487)
+ ...++-..+.|.. .-|.++++.||||... +
T Consensus 181 -------------~-~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~-------l------------------------- 214 (332)
T PF07745_consen 181 -------------D-NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT-------L------------------------- 214 (332)
T ss_dssp -------------S-HHHHHHHHHHHHHTTGG-SEEEEEE-STTST--------H-------------------------
T ss_pred -------------c-hHHHHHHHHHHHhcCCCcceEEEecCCCCcch-------H-------------------------
Confidence 0 1123334444443 4589999999999861 0
Q ss_pred eeecCCCceechHHHHHHHHHHHHHHhcCCCCCceeEEEeeccCCCCCCC-----------------CCCHHHHHHHHHH
Q 011390 256 AVHDPKGYVYTNMLDAQIDAVRTAINGLGFGNRSIKITVSESGWPSKGDS-----------------AATPENAKTYNTR 318 (487)
Q Consensus 256 ~~~d~~~~~y~n~fda~~dav~~a~~k~g~~~~~~~vvVtETGWPS~G~~-----------------~as~~na~~y~~~ 318 (487)
+-+...++.+. ++ | + |+|+|.|||||..-.. .+|++.|++|+++
T Consensus 215 -----------~~l~~~l~~l~---~r--y-~--K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~ 275 (332)
T PF07745_consen 215 -----------EDLKNNLNDLA---SR--Y-G--KPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRD 275 (332)
T ss_dssp -----------HHHHHHHHHHH---HH--H-T---EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHH---HH--h-C--CeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHH
Confidence 11223333332 33 2 3 8999999999998111 2589999999999
Q ss_pred HHHHHHcCCCCCCCCCCcceEEEEE-eecCCC-----CCCCCCCCceeeccCCCCee
Q 011390 319 LIERAQSNKGTPMRPKENIEVFVFA-LFNENK-----KEGGVSERNFGIFNGDGSKV 369 (487)
Q Consensus 319 li~~~~~~~Gtp~rpg~~i~~yiF~-~FDE~w-----K~g~~~E~~wGlf~~d~~~k 369 (487)
+++.+.+-.+ +..+-+|+-| ..-..+ ..|...|.. +||+.+|++-
T Consensus 276 l~~~v~~~p~-----~~g~GvfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l 326 (332)
T PF07745_consen 276 LINAVKNVPN-----GGGLGVFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNAL 326 (332)
T ss_dssp HHHHHHTS-------TTEEEEEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-
T ss_pred HHHHHHHhcc-----CCeEEEEeeccccccCCcccccCCCCCcccc-ccCCCCCCCc
Confidence 9999886211 1235555444 332222 133344444 8999888764
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.04 E-value=9e-05 Score=74.86 Aligned_cols=252 Identities=17% Similarity=0.229 Sum_probs=131.5
Q ss_pred HHHHHHHHhhCCCCEEE--Ee----cCC--------hHHH------HHHHhcCCeEEEEeccCcccccccChHHHHHHHh
Q 011390 51 PKKVAQLLQSTIIDKVK--IY----DTN--------PEIL------EAFANTGIDLIVAVENYHVSNISTDTASADEWLS 110 (487)
Q Consensus 51 ~~~v~~llk~~~~~~VR--iY----~~d--------~~vL------~A~~~tgi~V~vGv~n~~l~~~a~~~~~a~~wv~ 110 (487)
.+++.+.||..|+..|| +| |.| .++. +.+.+.|+||++-.--.+--+--.-+..-.+|..
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 56678999999987655 45 333 1222 3445789999998742221100000111123422
Q ss_pred -------hccccc--------C-CCceEEEEEeccccccc--CCCccccCChHHHHHHHHHHHHHHHHCCCCCceEEecc
Q 011390 111 -------TRVLPF--------L-PATSVVAIVVGNEYLTA--DGNQMMRMNPKALVQAMQNMHAALLARGLERKIKVTTP 172 (487)
Q Consensus 111 -------~~V~~~--------~-p~~~I~~I~VGNEvl~~--~~~~~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVtT~ 172 (487)
+.|-.| . -...+..|-||||.-.. |...+. .+...+...++.--+++|... ..|||-.-
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~-~~f~k~a~L~n~g~~avrev~--p~ikv~lH 221 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEG-RNFDKMAALLNAGIRAVREVS--PTIKVALH 221 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCC-cChHHHHHHHHHHhhhhhhcC--CCceEEEE
Confidence 222111 1 23567789999998532 111122 125566666666667776643 34666432
Q ss_pred cccccccccCCCCCcccCCCcchhHHHHHHHHHhc---CCCccccCCCCCccCCCCCCCCcccccccCCCCCccccCCCC
Q 011390 173 HSMAVLASSFPPSASTFAPDITPTMTSILAFLADT---GAPFMVNAYPYFAYRDNPSSVNLEYALLGGSAGVGINASSSG 249 (487)
Q Consensus 173 ~~~~vl~~s~pPS~g~F~~~~~~~~~~~l~fL~~~---~d~~~vN~yPyf~~~~~p~~~~l~yalf~~~~~~~~~~~~~~ 249 (487)
+.+.. ..+.|+ -+.|-|.+. -|.|.+-.||||.+.-+
T Consensus 222 -----la~g~--~n~~y~--------~~fd~ltk~nvdfDVig~SyYpyWhgtl~------------------------- 261 (403)
T COG3867 222 -----LAEGE--NNSLYR--------WIFDELTKRNVDFDVIGSSYYPYWHGTLN------------------------- 261 (403)
T ss_pred -----ecCCC--CCchhh--------HHHHHHHHcCCCceEEeeeccccccCcHH-------------------------
Confidence 22211 223333 222223322 36788999999988421
Q ss_pred CCCCceeeecCCCceechHHHHHHHHHHHHHHhcCCCCCceeEEEeeccC--------------CCCCCC---CCCHHHH
Q 011390 250 SGGGLYAVHDPKGYVYTNMLDAQIDAVRTAINGLGFGNRSIKITVSESGW--------------PSKGDS---AATPENA 312 (487)
Q Consensus 250 ~~~~~~~~~d~~~~~y~n~fda~~dav~~a~~k~g~~~~~~~vvVtETGW--------------PS~G~~---~as~~na 312 (487)
.++ +| ++.+- .+ | + |.|+|.||+. |+.+.. -.+++-|
T Consensus 262 ------------nL~-~n-----l~dia---~r--Y-~--K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQ 315 (403)
T COG3867 262 ------------NLT-TN-----LNDIA---SR--Y-H--KDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQ 315 (403)
T ss_pred ------------HHH-hH-----HHHHH---HH--h-c--CeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEech
Confidence 111 11 22121 11 2 3 8999999998 665533 3667889
Q ss_pred HHHHHHHHHHHHcCC-------------CCCCCCCCcceE-EEEEeecCCCCCCCCCCCceeeccCCCCeeeee
Q 011390 313 KTYNTRLIERAQSNK-------------GTPMRPKENIEV-FVFALFNENKKEGGVSERNFGIFNGDGSKVYQV 372 (487)
Q Consensus 313 ~~y~~~li~~~~~~~-------------Gtp~rpg~~i~~-yiF~~FDE~wK~g~~~E~~wGlf~~d~~~ky~l 372 (487)
++|.+++|+.+.+-. +-|.++|....+ |--+.-.|+|+.|..+++. -||+.+|.+--.|
T Consensus 316 at~vrDvie~V~nvp~~~GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNq-aLfdf~G~~LPSl 388 (403)
T COG3867 316 ATFVRDVIEAVKNVPKSNGLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQ-ALFDFNGHPLPSL 388 (403)
T ss_pred hhHHHHHHHHHHhCCCCCceEEEEecccceeccCCCccccchhhccCcccccCCCccchh-hhhhccCCcCcch
Confidence 999999999987421 123333322222 2222334666665433332 5666666654444
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.94 E-value=0.00042 Score=68.31 Aligned_cols=131 Identities=18% Similarity=0.123 Sum_probs=82.4
Q ss_pred ccceEEeCCCCCCCCCHHHHHHHHhhCCCCEEEEecC-------------Ch-------HHHHHHHhcCCeEEEEeccC-
Q 011390 35 AGVGINYGTLGNNLPSPKKVAQLLQSTIIDKVKIYDT-------------NP-------EILEAFANTGIDLIVAVENY- 93 (487)
Q Consensus 35 ~~~GvnYg~~~~nlps~~~v~~llk~~~~~~VRiY~~-------------d~-------~vL~A~~~tgi~V~vGv~n~- 93 (487)
...|+|-. ..++. ..++.++.+++.|++.|||.-. +. .+|+++++.||.|+|.+...
T Consensus 9 ~~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~ 86 (281)
T PF00150_consen 9 NWRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAP 86 (281)
T ss_dssp EEEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEEST
T ss_pred Eeeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 34566665 22222 6788899999999999999721 11 57788889999999998753
Q ss_pred c---ccccccChHHHHHHHhh---cccccC-CCceEEEEEecccccccCCC----ccccCChHHHHHHHHHHHHHHHHCC
Q 011390 94 H---VSNISTDTASADEWLST---RVLPFL-PATSVVAIVVGNEYLTADGN----QMMRMNPKALVQAMQNMHAALLARG 162 (487)
Q Consensus 94 ~---l~~~a~~~~~a~~wv~~---~V~~~~-p~~~I~~I~VGNEvl~~~~~----~~~~~~~~~ll~am~nv~~aL~~~g 162 (487)
. -...........+|+++ .|...| ....|.++=+.||+...... ... ...+.+.++.+.+++|+.+
T Consensus 87 ~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~---~~~~~~~~~~~~~~Ir~~~ 163 (281)
T PF00150_consen 87 GWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQN---PADWQDWYQRAIDAIRAAD 163 (281)
T ss_dssp TCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHH---THHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCcccccccc---chhhhhHHHHHHHHHHhcC
Confidence 0 01111122233344332 233323 33457899999999876311 011 4778899999999999998
Q ss_pred CCCceEEe
Q 011390 163 LERKIKVT 170 (487)
Q Consensus 163 l~~~IkVt 170 (487)
-+..|-|.
T Consensus 164 ~~~~i~~~ 171 (281)
T PF00150_consen 164 PNHLIIVG 171 (281)
T ss_dssp SSSEEEEE
T ss_pred CcceeecC
Confidence 87544333
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.70 E-value=0.0069 Score=67.65 Aligned_cols=237 Identities=15% Similarity=0.117 Sum_probs=130.0
Q ss_pred HHHHHhhCCCCEEEEec--CChHHHHHHHhcCCeEEEEeccCc---------------ccccc---cCh---HHHHHHHh
Q 011390 54 VAQLLQSTIIDKVKIYD--TNPEILEAFANTGIDLIVAVENYH---------------VSNIS---TDT---ASADEWLS 110 (487)
Q Consensus 54 v~~llk~~~~~~VRiY~--~d~~vL~A~~~tgi~V~vGv~n~~---------------l~~~a---~~~---~~a~~wv~ 110 (487)
.+++||..|++.||+-. .++..+.++...||-|+.=++... -.... .++ ....+-++
T Consensus 318 d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (604)
T PRK10150 318 DHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIR 397 (604)
T ss_pred HHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 45678999999999943 357899999999998886443210 00000 001 11222244
Q ss_pred hcccccCCCceEEEEEecccccccCCCccccCChHHHHHHHHHHHHHHHHCCCCCceEEecccccccccccCCCCCcccC
Q 011390 111 TRVLPFLPATSVVAIVVGNEYLTADGNQMMRMNPKALVQAMQNMHAALLARGLERKIKVTTPHSMAVLASSFPPSASTFA 190 (487)
Q Consensus 111 ~~V~~~~p~~~I~~I~VGNEvl~~~~~~~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVtT~~~~~vl~~s~pPS~g~F~ 190 (487)
+.|..+...-.|..=.+|||.-... ......++.+.+.+++..-+ =+|+.+..+. . .|.
T Consensus 398 ~mv~r~~NHPSIi~Ws~gNE~~~~~---------~~~~~~~~~l~~~~k~~Dpt--R~vt~~~~~~---~--~~~----- 456 (604)
T PRK10150 398 ELIARDKNHPSVVMWSIANEPASRE---------QGAREYFAPLAELTRKLDPT--RPVTCVNVMF---A--TPD----- 456 (604)
T ss_pred HHHHhccCCceEEEEeeccCCCccc---------hhHHHHHHHHHHHHHhhCCC--CceEEEeccc---C--Ccc-----
Confidence 4555543333578899999964321 12233445555555554433 2355543211 0 010
Q ss_pred CCcchhHHHHHHHHHhcCCCccccCCCCCccCCCCCCCCcccccccCCCCCccccCCCCCCCCceeeecCCCceechHHH
Q 011390 191 PDITPTMTSILAFLADTGAPFMVNAYPYFAYRDNPSSVNLEYALLGGSAGVGINASSSGSGGGLYAVHDPKGYVYTNMLD 270 (487)
Q Consensus 191 ~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~~~~~p~~~~l~yalf~~~~~~~~~~~~~~~~~~~~~~~d~~~~~y~n~fd 270 (487)
.+ -+.+..|+++.|.|+=|-. +.... + .....++
T Consensus 457 ~~----------~~~~~~Dv~~~N~Y~~wy~--~~~~~----~------------------------------~~~~~~~ 490 (604)
T PRK10150 457 TD----------TVSDLVDVLCLNRYYGWYV--DSGDL----E------------------------------TAEKVLE 490 (604)
T ss_pred cc----------cccCcccEEEEcccceecC--CCCCH----H------------------------------HHHHHHH
Confidence 00 0233568889998753321 10000 0 0011233
Q ss_pred HHHHHHHHHHHhcCCCCCceeEEEeeccCCCCC------CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceEEEEEe
Q 011390 271 AQIDAVRTAINGLGFGNRSIKITVSESGWPSKG------DSAATPENAKTYNTRLIERAQSNKGTPMRPKENIEVFVFAL 344 (487)
Q Consensus 271 a~~dav~~a~~k~g~~~~~~~vvVtETGWPS~G------~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~i~~yiF~~ 344 (487)
..++... ++ + + +|++|+|.|+.+.- +..-+.+.|..|++...+.+.+ +|. -+-.|+..+
T Consensus 491 ~~~~~~~---~~--~-~--kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW~~ 555 (604)
T PRK10150 491 KELLAWQ---EK--L-H--KPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVWNF 555 (604)
T ss_pred HHHHHHH---Hh--c-C--CCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEEee
Confidence 3333221 11 2 4 89999999976532 1234678888888877776653 232 355889999
Q ss_pred ecCCCCCCC--CCCCceeeccCCCCeeeee
Q 011390 345 FNENKKEGG--VSERNFGIFNGDGSKVYQV 372 (487)
Q Consensus 345 FDE~wK~g~--~~E~~wGlf~~d~~~ky~l 372 (487)
||-.+..|. ....+.||++.||+||-..
T Consensus 556 ~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~ 585 (604)
T PRK10150 556 ADFATSQGILRVGGNKKGIFTRDRQPKSAA 585 (604)
T ss_pred eccCCCCCCcccCCCcceeEcCCCCChHHH
Confidence 996554331 1234789999999998643
No 10
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.16 E-value=0.014 Score=57.80 Aligned_cols=167 Identities=18% Similarity=0.180 Sum_probs=96.4
Q ss_pred ceEEEEEecccccccCCCccccCChHHHHHHHHHHHHHHHHCCCCCceEEecccccccccccCCCCCcccCCCcchhHHH
Q 011390 120 TSVVAIVVGNEYLTADGNQMMRMNPKALVQAMQNMHAALLARGLERKIKVTTPHSMAVLASSFPPSASTFAPDITPTMTS 199 (487)
Q Consensus 120 ~~I~~I~VGNEvl~~~~~~~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVtT~~~~~vl~~s~pPS~g~F~~~~~~~~~~ 199 (487)
..++.|..=||+=... ...++ +++.+...+++.+.|+. ..+|+..|.....-. . .| +-.+-|..
T Consensus 64 ~~~~~ll~fNEPD~~~-qsn~~--p~~aa~~w~~~~~~~~~----~~~~l~sPa~~~~~~-~-~~-------~g~~Wl~~ 127 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPG-QSNMS--PEEAAALWKQYMNPLRS----PGVKLGSPAVAFTNG-G-TP-------GGLDWLSQ 127 (239)
T ss_pred cCccceeeecCCCCCC-CCCCC--HHHHHHHHHHHHhHhhc----CCcEEECCeecccCC-C-CC-------CccHHHHH
Confidence 4688999999997654 22333 88888888887777773 247777663211100 0 01 11122444
Q ss_pred HHHHHH--hcCCCccccCCCCCccCCCCCCCCcccccccCCCCCccccCCCCCCCCceeeecCCCceechHHHHHHHHHH
Q 011390 200 ILAFLA--DTGAPFMVNAYPYFAYRDNPSSVNLEYALLGGSAGVGINASSSGSGGGLYAVHDPKGYVYTNMLDAQIDAVR 277 (487)
Q Consensus 200 ~l~fL~--~~~d~~~vN~yPyf~~~~~p~~~~l~yalf~~~~~~~~~~~~~~~~~~~~~~~d~~~~~y~n~fda~~dav~ 277 (487)
.++-.. ...|++.||.| ..+. .-|...|+.++
T Consensus 128 F~~~~~~~~~~D~iavH~Y-----~~~~-----------------------------------------~~~~~~i~~~~ 161 (239)
T PF11790_consen 128 FLSACARGCRVDFIAVHWY-----GGDA-----------------------------------------DDFKDYIDDLH 161 (239)
T ss_pred HHHhcccCCCccEEEEecC-----CcCH-----------------------------------------HHHHHHHHHHH
Confidence 333221 25567666665 1100 01233344443
Q ss_pred HHHHhcCCCCCceeEEEeeccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceEEEEEeecCCCCCCCCCCC
Q 011390 278 TAINGLGFGNRSIKITVSESGWPSKGDSAATPENAKTYNTRLIERAQSNKGTPMRPKENIEVFVFALFNENKKEGGVSER 357 (487)
Q Consensus 278 ~a~~k~g~~~~~~~vvVtETGWPS~G~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~i~~yiF~~FDE~wK~g~~~E~ 357 (487)
++.| +||+|||.|+.. +....+.++++.|.+..+..+.+. +. .-.++||. |-..+. ....
T Consensus 162 ---~~~~-----kPIWITEf~~~~-~~~~~~~~~~~~fl~~~~~~ld~~------~~-VeryawF~-~~~~~~---~~~~ 221 (239)
T PF11790_consen 162 ---NRYG-----KPIWITEFGCWN-GGSQGSDEQQASFLRQALPWLDSQ------PY-VERYAWFG-FMNDGS---GVNP 221 (239)
T ss_pred ---HHhC-----CCEEEEeecccC-CCCCCCHHHHHHHHHHHHHHHhcC------CC-eeEEEecc-cccccC---CCcc
Confidence 3333 899999999876 333688899999999999998753 22 24567888 322222 3455
Q ss_pred ceeeccCCCCe
Q 011390 358 NFGIFNGDGSK 368 (487)
Q Consensus 358 ~wGlf~~d~~~ 368 (487)
+-.|++.+|++
T Consensus 222 ~~~L~~~~G~l 232 (239)
T PF11790_consen 222 NSALLDADGSL 232 (239)
T ss_pred ccccccCCCCc
Confidence 55677777743
No 11
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.14 E-value=0.038 Score=55.01 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=47.6
Q ss_pred eeEEEeeccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceEEEEEeecC-CCCCCCCCCCceeeccCCCCe
Q 011390 290 IKITVSESGWPSKGDSAATPENAKTYNTRLIERAQSNKGTPMRPKENIEVFVFALFNE-NKKEGGVSERNFGIFNGDGSK 368 (487)
Q Consensus 290 ~~vvVtETGWPS~G~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~i~~yiF~~FDE-~wK~g~~~E~~wGlf~~d~~~ 368 (487)
++|+|||.+-|.. .+++.|+.+++++++.+.+. | + ..-+++..+.|. .|.++ .+-|||+.|+++
T Consensus 183 ~pi~iTE~dv~~~----~~~~~qA~~~~~~l~~~~~~---p---~-v~gi~~Wg~~d~~~W~~~----~~~~L~d~~~~~ 247 (254)
T smart00633 183 LEIQITELDISGY----PNPQAQAADYEEVFKACLAH---P---A-VTGVTVWGVTDKYSWLDG----GAPLLFDANYQP 247 (254)
T ss_pred CceEEEEeecCCC----CcHHHHHHHHHHHHHHHHcC---C---C-eeEEEEeCCccCCcccCC----CCceeECCCCCC
Confidence 8999999999985 34588899999999988763 2 1 133445555553 45442 467999999988
Q ss_pred ee
Q 011390 369 VY 370 (487)
Q Consensus 369 ky 370 (487)
|-
T Consensus 248 kp 249 (254)
T smart00633 248 KP 249 (254)
T ss_pred Ch
Confidence 74
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=93.87 E-value=8.3 Score=41.59 Aligned_cols=81 Identities=16% Similarity=0.252 Sum_probs=48.3
Q ss_pred HHHHHHHHhhCCCCEEEEe--------c----CCh-------HHHHHHHhcCCeEEEEeccCccccc-c-----cChHHH
Q 011390 51 PKKVAQLLQSTIIDKVKIY--------D----TNP-------EILEAFANTGIDLIVAVENYHVSNI-S-----TDTASA 105 (487)
Q Consensus 51 ~~~v~~llk~~~~~~VRiY--------~----~d~-------~vL~A~~~tgi~V~vGv~n~~l~~~-a-----~~~~~a 105 (487)
-++.+++|++.|++.+|+= + .|. ++|.++.+.||+++|.+.-.+++.- . .+++..
T Consensus 56 y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~gGw~~~~~~ 135 (427)
T TIGR03356 56 YEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDRGGWLNRDTA 135 (427)
T ss_pred HHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhcCCCCChHHH
Confidence 3567889999999999862 1 121 6888999999999999964443321 1 112222
Q ss_pred HHHH--hhcccccCCCceEEEEEeccccc
Q 011390 106 DEWL--STRVLPFLPATSVVAIVVGNEYL 132 (487)
Q Consensus 106 ~~wv--~~~V~~~~p~~~I~~I~VGNEvl 132 (487)
+.++ .+.+...+++ .|+..+.=||..
T Consensus 136 ~~f~~ya~~~~~~~~d-~v~~w~t~NEp~ 163 (427)
T TIGR03356 136 EWFAEYAAVVAERLGD-RVKHWITLNEPW 163 (427)
T ss_pred HHHHHHHHHHHHHhCC-cCCEEEEecCcc
Confidence 2211 1122222333 577777778875
No 13
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=89.03 E-value=3.5 Score=41.72 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=54.5
Q ss_pred cceEEeCCCCCC---CCCHHHH---HHHHhhCCCCEEEEec--CChHHHHHHHhcCCeEEEEeccCc--c-cc------c
Q 011390 36 GVGINYGTLGNN---LPSPKKV---AQLLQSTIIDKVKIYD--TNPEILEAFANTGIDLIVAVENYH--V-SN------I 98 (487)
Q Consensus 36 ~~GvnYg~~~~n---lps~~~v---~~llk~~~~~~VRiY~--~d~~vL~A~~~tgi~V~vGv~n~~--l-~~------~ 98 (487)
..|||+...... .++.+.+ ++++|+.|++.||+.. .++..+.++...||-|+.-++... . .. .
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 369998764322 2444444 4577999999999964 357999999999999998876411 0 10 1
Q ss_pred ccCh---HHHHHHHhhcccccCCCceEEEEEecccc
Q 011390 99 STDT---ASADEWLSTRVLPFLPATSVVAIVVGNEY 131 (487)
Q Consensus 99 a~~~---~~a~~wv~~~V~~~~p~~~I~~I~VGNEv 131 (487)
..++ +.+.+.+++.|..+...-.|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 1122 22334455555554322347788899999
No 14
>PRK09936 hypothetical protein; Provisional
Probab=84.25 E-value=14 Score=38.09 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=42.2
Q ss_pred ccceEEeCCCCCC-CCCHHHHHHH---HhhCCCCEEEEe-----cCC--------hHHHHHHHhcCCeEEEEeccC
Q 011390 35 AGVGINYGTLGNN-LPSPKKVAQL---LQSTIIDKVKIY-----DTN--------PEILEAFANTGIDLIVAVENY 93 (487)
Q Consensus 35 ~~~GvnYg~~~~n-lps~~~v~~l---lk~~~~~~VRiY-----~~d--------~~vL~A~~~tgi~V~vGv~n~ 93 (487)
+.-|+=|-+...| --++++--++ ++..|++.+=+= +.| ...|+++.+.||+|.||++-|
T Consensus 20 a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 20 AMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred ccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 4456779999887 4567776554 566888766442 222 368888899999999999854
No 15
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=84.21 E-value=1.4 Score=45.76 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=36.4
Q ss_pred HHHHHHhcCCeEEEEeccCcccccccChHHHHHHHhhcccccC-----CCceEEEEEecccccccCCCccccCChHHHHH
Q 011390 75 ILEAFANTGIDLIVAVENYHVSNISTDTASADEWLSTRVLPFL-----PATSVVAIVVGNEYLTADGNQMMRMNPKALVQ 149 (487)
Q Consensus 75 vL~A~~~tgi~V~vGv~n~~l~~~a~~~~~a~~wv~~~V~~~~-----p~~~I~~I~VGNEvl~~~~~~~~~~~~~~ll~ 149 (487)
+.+-+..+|++|+.|+.--.-.....+......|=-+|...+. ..=+|.+-=.|||.-..+ ...++++.++..
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g--~~~~v~a~qyak 191 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSG--VGASVSAEQYAK 191 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHS--SSTT--HHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCC--CCCccCHHHHHH
Confidence 3344568999999999511000000011234567666643332 123577888999976543 122234888888
Q ss_pred HHHHHHHHHHH
Q 011390 150 AMQNMHAALLA 160 (487)
Q Consensus 150 am~nv~~aL~~ 160 (487)
....+|+.|++
T Consensus 192 D~~~Lr~il~~ 202 (319)
T PF03662_consen 192 DFIQLRKILNE 202 (319)
T ss_dssp HH---HHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888876
No 16
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=81.37 E-value=27 Score=38.19 Aligned_cols=246 Identities=16% Similarity=0.167 Sum_probs=111.9
Q ss_pred HHhhCCCCEEEEecC--C---------------------hHHHHHHHhcCCeEEEEeccCccccccc-------------
Q 011390 57 LLQSTIIDKVKIYDT--N---------------------PEILEAFANTGIDLIVAVENYHVSNIST------------- 100 (487)
Q Consensus 57 llk~~~~~~VRiY~~--d---------------------~~vL~A~~~tgi~V~vGv~n~~l~~~a~------------- 100 (487)
+.+..||+.||+.+. | -.++..+...||+-+|-+.- +...+++
T Consensus 48 ~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f-~p~~~~~~~~~~~~~~~~~~ 126 (486)
T PF01229_consen 48 LQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGF-MPMALASGYQTVFWYKGNIS 126 (486)
T ss_dssp HHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-S-B-GGGBSS--EETTTTEE-S
T ss_pred HHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEe-chhhhcCCCCccccccCCcC
Confidence 334578999998742 1 15788888999998776641 1111111
Q ss_pred ---ChHH----HHHHHhhcccccCCCceEE--EEEecccccccCCC-ccccCChHHHHHHHHHHHHHHHHCCCCCceEEe
Q 011390 101 ---DTAS----ADEWLSTRVLPFLPATSVV--AIVVGNEYLTADGN-QMMRMNPKALVQAMQNMHAALLARGLERKIKVT 170 (487)
Q Consensus 101 ---~~~~----a~~wv~~~V~~~~p~~~I~--~I~VGNEvl~~~~~-~~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVt 170 (487)
+... ..++++..+..| +...|+ ..=|=||.=..... ... ..+-....+.+.++|++..- .+||+
T Consensus 127 pp~~~~~W~~lv~~~~~h~~~RY-G~~ev~~W~fEiWNEPd~~~f~~~~~---~~ey~~ly~~~~~~iK~~~p--~~~vG 200 (486)
T PF01229_consen 127 PPKDYEKWRDLVRAFARHYIDRY-GIEEVSTWYFEIWNEPDLKDFWWDGT---PEEYFELYDATARAIKAVDP--ELKVG 200 (486)
T ss_dssp -BS-HHHHHHHHHHHHHHHHHHH-HHHHHTTSEEEESS-TTSTTTSGGG----HHHHHHHHHHHHHHHHHH-T--TSEEE
T ss_pred CcccHHHHHHHHHHHHHHHHhhc-CCccccceeEEeCcCCCcccccCCCC---HHHHHHHHHHHHHHHHHhCC--CCccc
Confidence 1111 122233333333 111111 45678986443211 112 45677788888888888753 58888
Q ss_pred cccccccccccCCCCCcccCCCcchhHHHHHHHHHh---cCCCccccCCCCCccCCCCCCCCcccccccCCCCCccccCC
Q 011390 171 TPHSMAVLASSFPPSASTFAPDITPTMTSILAFLAD---TGAPFMVNAYPYFAYRDNPSSVNLEYALLGGSAGVGINASS 247 (487)
Q Consensus 171 T~~~~~vl~~s~pPS~g~F~~~~~~~~~~~l~fL~~---~~d~~~vN~yPyf~~~~~p~~~~l~yalf~~~~~~~~~~~~ 247 (487)
-+-. .+. ....+...++|+.+ --||+..|.||+-....... .
T Consensus 201 Gp~~--~~~-------------~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~-------------~------- 245 (486)
T PF01229_consen 201 GPAF--AWA-------------YDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINE-------------N------- 245 (486)
T ss_dssp EEEE--ETT--------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS---------------------
T ss_pred Cccc--ccc-------------HHHHHHHHHHHHhcCCCCCCEEEEEecccccccccch-------------h-------
Confidence 6611 000 11236777777765 35777777777432211000 0
Q ss_pred CCCCCCceeeecCCCceechHHHHHHHHHHHHHHhcCCCCCceeEEEeeccCCCCCCC----CCCHHHHHHHHHHHHHHH
Q 011390 248 SGSGGGLYAVHDPKGYVYTNMLDAQIDAVRTAINGLGFGNRSIKITVSESGWPSKGDS----AATPENAKTYNTRLIERA 323 (487)
Q Consensus 248 ~~~~~~~~~~~d~~~~~y~n~fda~~dav~~a~~k~g~~~~~~~vvVtETGWPS~G~~----~as~~na~~y~~~li~~~ 323 (487)
....... ...+++. +..+...+...++++ +++.++| |.+.-.. .-|.-+|+-..++++...
T Consensus 246 ------~~~~~~~----~~~~~~~-~~~~~~~~~~e~~p~--~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~ 310 (486)
T PF01229_consen 246 ------MYERIED----SRRLFPE-LKETRPIINDEADPN--LPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSND 310 (486)
T ss_dssp ------EEEEB------HHHHHHH-HHHHHHHHHTSSSTT----EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHG
T ss_pred ------HHhhhhh----HHHHHHH-HHHHHHHHhhccCCC--Cceeecc--cccccCCCcchhccccchhhHHHHHHHhh
Confidence 0001110 1112222 333334455667788 9999999 8775543 344555555555566554
Q ss_pred HcCCCCCCCCCCcceEEE---E-EeecCCCCCCCCCCCceeeccCCCCee
Q 011390 324 QSNKGTPMRPKENIEVFV---F-ALFNENKKEGGVSERNFGIFNGDGSKV 369 (487)
Q Consensus 324 ~~~~Gtp~rpg~~i~~yi---F-~~FDE~wK~g~~~E~~wGlf~~d~~~k 369 (487)
.. .++.|- | ..|.|+--+...+-.-|||++-+|-+|
T Consensus 311 ~~----------~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 311 GA----------FLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp GG----------T-SEEEES-SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred hh----------hhhhhhccchhhhhhccCCCCCceecchhhhhccCCCc
Confidence 32 123321 1 123333222224556699999998555
No 17
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=75.01 E-value=16 Score=38.36 Aligned_cols=135 Identities=15% Similarity=0.196 Sum_probs=76.3
Q ss_pred CCCEEEEec-CChHHHHHHHhcCCeEEEEeccCcccccccChHHHHHHHhhcccccCCCceEEEEEecccccccCCCccc
Q 011390 62 IIDKVKIYD-TNPEILEAFANTGIDLIVAVENYHVSNISTDTASADEWLSTRVLPFLPATSVVAIVVGNEYLTADGNQMM 140 (487)
Q Consensus 62 ~~~~VRiY~-~d~~vL~A~~~tgi~V~vGv~n~~l~~~a~~~~~a~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~~~~ 140 (487)
.+++|-+|+ .|++++..+...|++|++..... .+.+ +++..-+++++..| .+...-.+.+|-+==|-.... +...
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~-~~~d 130 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITK-GSPE 130 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCC-Ccch
Confidence 478888885 47899999999999999864321 2223 34444444554332 222222345555544543321 1111
Q ss_pred cCChHHHHHHHHHHHHHHHHCCCCCceEEecccccccccccCCCCCcccC-CCcchhHHHHHHHHHhcCCCccccCCCCC
Q 011390 141 RMNPKALVQAMQNMHAALLARGLERKIKVTTPHSMAVLASSFPPSASTFA-PDITPTMTSILAFLADTGAPFMVNAYPYF 219 (487)
Q Consensus 141 ~~~~~~ll~am~nv~~aL~~~gl~~~IkVtT~~~~~vl~~s~pPS~g~F~-~~~~~~~~~~l~fL~~~~d~~~vN~yPyf 219 (487)
...+..-|+++|++|++.+..-. +|.+..+. |+....+ -| + .-|++..|++.|-.|=|+
T Consensus 131 ---~~~~t~llkelr~~l~~~~~~~~--Lsvav~~~-------p~~~~~~~yd----~----~~l~~~vD~v~lMtYD~h 190 (358)
T cd02875 131 ---YYALTELVKETTKAFKKENPGYQ--ISFDVAWS-------PSCIDKRCYD----Y----TGIADASDFLVVMDYDEQ 190 (358)
T ss_pred ---HHHHHHHHHHHHHHHhhcCCCcE--EEEEEecC-------cccccccccC----H----HHHHhhCCEeeEEeeccc
Confidence 46788999999999998764322 44332211 1111110 12 2 236678899999988765
Q ss_pred c
Q 011390 220 A 220 (487)
Q Consensus 220 ~ 220 (487)
.
T Consensus 191 ~ 191 (358)
T cd02875 191 S 191 (358)
T ss_pred C
Confidence 4
No 18
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=72.62 E-value=10 Score=39.75 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=50.3
Q ss_pred HHHHHHHHhhCCCCEEEEec-------CC---------hHHHHHHHhcCCeEEEEeccCcc--------ccc--------
Q 011390 51 PKKVAQLLQSTIIDKVKIYD-------TN---------PEILEAFANTGIDLIVAVENYHV--------SNI-------- 98 (487)
Q Consensus 51 ~~~v~~llk~~~~~~VRiY~-------~d---------~~vL~A~~~tgi~V~vGv~n~~l--------~~~-------- 98 (487)
-++.++++|..|++.|||.. +. ..+|..+++.||+|+|+++.... +.+
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~ 91 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGR 91 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTS
T ss_pred HHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCC
Confidence 35567788899999999842 11 25788889999999999962210 000
Q ss_pred ----cc-------C---hHHHHHHHhhcccccCCCceEEEEEecccccc
Q 011390 99 ----ST-------D---TASADEWLSTRVLPFLPATSVVAIVVGNEYLT 133 (487)
Q Consensus 99 ----a~-------~---~~~a~~wv~~~V~~~~p~~~I~~I~VGNEvl~ 133 (487)
.. + .+.+.+.++.-+..|...-.|.++.|.||.-.
T Consensus 92 ~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 92 RRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 00 0 12334444444444544456999999999865
No 19
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=66.76 E-value=2.3 Score=46.10 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=65.2
Q ss_pred HHHHHHHHhhCCCCEEEEe--------c-----CCh-------HHHHHHHhcCCeEEEEeccCcccccc------cChHH
Q 011390 51 PKKVAQLLQSTIIDKVKIY--------D-----TNP-------EILEAFANTGIDLIVAVENYHVSNIS------TDTAS 104 (487)
Q Consensus 51 ~~~v~~llk~~~~~~VRiY--------~-----~d~-------~vL~A~~~tgi~V~vGv~n~~l~~~a------~~~~~ 104 (487)
-++.+++||++|++..|+= + .|+ ++|..+...||+.+|.+.--+++..- .+.+.
T Consensus 60 y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~ 139 (455)
T PF00232_consen 60 YKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRET 139 (455)
T ss_dssp HHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHH
T ss_pred hhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHH
Confidence 4678899999999999874 1 122 68889999999999999754444211 11122
Q ss_pred HHHHHhhc---ccccCCCceEEEEEecccccccC---C--C---cc-cc-----CChHHHHHHHHHHHHHHHHCCCCCce
Q 011390 105 ADEWLSTR---VLPFLPATSVVAIVVGNEYLTAD---G--N---QM-MR-----MNPKALVQAMQNMHAALLARGLERKI 167 (487)
Q Consensus 105 a~~wv~~~---V~~~~p~~~I~~I~VGNEvl~~~---~--~---~~-~~-----~~~~~ll~am~nv~~aL~~~gl~~~I 167 (487)
+ +|..+. |...++ ..|+.-+.=||...-. + + +. .. .....++-|-..+.+++++...+ .
T Consensus 140 ~-~~F~~Ya~~~~~~~g-d~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~--~ 215 (455)
T PF00232_consen 140 V-DWFARYAEFVFERFG-DRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPD--G 215 (455)
T ss_dssp H-HHHHHHHHHHHHHHT-TTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCT--S
T ss_pred H-HHHHHHHHHHHHHhC-CCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccc--e
Confidence 2 122111 111123 4688888889986421 0 0 00 00 00223555555666777776643 4
Q ss_pred EEeccccc
Q 011390 168 KVTTPHSM 175 (487)
Q Consensus 168 kVtT~~~~ 175 (487)
+|+..++.
T Consensus 216 ~IGi~~~~ 223 (455)
T PF00232_consen 216 KIGIALNF 223 (455)
T ss_dssp EEEEEEEE
T ss_pred EEeccccc
Confidence 56655543
No 20
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=63.21 E-value=10 Score=35.61 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=27.4
Q ss_pred HHHHHhhCCCCEEEEecCChHHHHHHHhcCCeEEEEe
Q 011390 54 VAQLLQSTIIDKVKIYDTNPEILEAFANTGIDLIVAV 90 (487)
Q Consensus 54 v~~llk~~~~~~VRiY~~d~~vL~A~~~tgi~V~vGv 90 (487)
-+|+|+..|+++||+...+|.-+.++.+.||+|.=-|
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEe
Confidence 4689999999999999999999999999999997544
No 21
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=60.69 E-value=32 Score=26.67 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=35.4
Q ss_pred CCHHHHHHHHhhCCCCEEEEecCC-----hHHHHHHHhcCCeEEEEec
Q 011390 49 PSPKKVAQLLQSTIIDKVKIYDTN-----PEILEAFANTGIDLIVAVE 91 (487)
Q Consensus 49 ps~~~v~~llk~~~~~~VRiY~~d-----~~vL~A~~~tgi~V~vGv~ 91 (487)
-++++.++..+.+|++.|=+=|-+ ....+.++..||+|+.|+.
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E 62 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLE 62 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEE
Confidence 458899999999999999888766 3556677789999999985
No 22
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.48 E-value=29 Score=36.84 Aligned_cols=57 Identities=16% Similarity=0.403 Sum_probs=38.1
Q ss_pred echHHHHHHHHHHHHHHhcCCCCCceeEEEeeccCCCCCCC------CCCHHHHHHHHHHHHHHHHcC
Q 011390 265 YTNMLDAQIDAVRTAINGLGFGNRSIKITVSESGWPSKGDS------AATPENAKTYNTRLIERAQSN 326 (487)
Q Consensus 265 y~n~fda~~dav~~a~~k~g~~~~~~~vvVtETGWPS~G~~------~as~~na~~y~~~li~~~~~~ 326 (487)
|.|-|++-+-....-+...|+.. .+|+.| |||.|.- ..|-+-++.-+.++++.+...
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~--~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDG--VPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCc--ceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 66677765544444455667776 888887 9999976 345555566667777777653
No 23
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=56.02 E-value=18 Score=34.82 Aligned_cols=33 Identities=27% Similarity=0.612 Sum_probs=30.5
Q ss_pred HHHHhhCCCCEEEEecCChHHHHHHHhcCCeEE
Q 011390 55 AQLLQSTIIDKVKIYDTNPEILEAFANTGIDLI 87 (487)
Q Consensus 55 ~~llk~~~~~~VRiY~~d~~vL~A~~~tgi~V~ 87 (487)
+|+|+..|+++||+....+.-+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999998888889999999987
No 24
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=55.34 E-value=18 Score=34.93 Aligned_cols=33 Identities=30% Similarity=0.649 Sum_probs=30.7
Q ss_pred HHHHhhCCCCEEEEecCChHHHHHHHhcCCeEE
Q 011390 55 AQLLQSTIIDKVKIYDTNPEILEAFANTGIDLI 87 (487)
Q Consensus 55 ~~llk~~~~~~VRiY~~d~~vL~A~~~tgi~V~ 87 (487)
+|+|+..|+++||+....+.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999998888889999999997
No 25
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=50.59 E-value=26 Score=38.30 Aligned_cols=46 Identities=11% Similarity=0.321 Sum_probs=35.3
Q ss_pred HHHHHHHHhhCCCCEEEE-------e--c---CCh-------HHHHHHHhcCCeEEEEeccCccc
Q 011390 51 PKKVAQLLQSTIIDKVKI-------Y--D---TNP-------EILEAFANTGIDLIVAVENYHVS 96 (487)
Q Consensus 51 ~~~v~~llk~~~~~~VRi-------Y--~---~d~-------~vL~A~~~tgi~V~vGv~n~~l~ 96 (487)
-++.+++|+++|++.-|+ + + .|. +++.+|.+.||+-+|.+.--+++
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 120 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTP 120 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCc
Confidence 467889999999887775 2 1 132 68899999999999999865554
No 26
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=50.00 E-value=69 Score=32.59 Aligned_cols=84 Identities=12% Similarity=0.243 Sum_probs=50.1
Q ss_pred ChHHHHHHHhcCCeEEEEeccCc--------ccccccChHHHHHHHhhcccccCCCceEEEEEecccccccCCCccccCC
Q 011390 72 NPEILEAFANTGIDLIVAVENYH--------VSNISTDTASADEWLSTRVLPFLPATSVVAIVVGNEYLTADGNQMMRMN 143 (487)
Q Consensus 72 d~~vL~A~~~tgi~V~vGv~n~~--------l~~~a~~~~~a~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~~~~~~~ 143 (487)
+++++.+++..+++|++.|.+.. ...+.+++..-...++ +|..+.-.-.+.+|-+-=|.+.. +.
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~-~iv~~l~~~~~DGidiDwE~~~~----~d--- 118 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLIN-NILALAKKYGYDGVNIDFENVPP----ED--- 118 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHH-HHHHHHHHhCCCcEEEecccCCH----HH---
Confidence 35788888888999999997642 1233444432233332 33322211234556555455432 12
Q ss_pred hHHHHHHHHHHHHHHHHCCC
Q 011390 144 PKALVQAMQNMHAALLARGL 163 (487)
Q Consensus 144 ~~~ll~am~nv~~aL~~~gl 163 (487)
....+.-|+.+|++|++.|+
T Consensus 119 ~~~~~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 119 REAYTQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHHHHHhhhcCc
Confidence 45688999999999987765
No 27
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=48.57 E-value=58 Score=30.56 Aligned_cols=85 Identities=19% Similarity=0.357 Sum_probs=45.8
Q ss_pred HHHHHHHhc--CCeEEEEeccCccc---ccccChHHHHHHHhhcccccCCCceEEEEEecccccccCCCccccCChHHHH
Q 011390 74 EILEAFANT--GIDLIVAVENYHVS---NISTDTASADEWLSTRVLPFLPATSVVAIVVGNEYLTADGNQMMRMNPKALV 148 (487)
Q Consensus 74 ~vL~A~~~t--gi~V~vGv~n~~l~---~~a~~~~~a~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~~~~~~~~~~ll 148 (487)
.-++.++.. |++|++.|...... .++.+.+..++.++ ++..+...-.+.+|-+==|..... +... ...++
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~~~~DGidiD~E~~~~~-~~~~---~~~~~ 127 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKTYGFDGVDIDWEYPGAA-DNSD---RENFI 127 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHHcCCCceEEeeeCCCCc-CccH---HHHHH
Confidence 445666654 99999999854322 23444443333322 222222122345555533443221 1001 46789
Q ss_pred HHHHHHHHHHHHCCC
Q 011390 149 QAMQNMHAALLARGL 163 (487)
Q Consensus 149 ~am~nv~~aL~~~gl 163 (487)
..|+.+|++|.+.++
T Consensus 128 ~ll~~lr~~l~~~~~ 142 (210)
T cd00598 128 TLLRELRSALGAANY 142 (210)
T ss_pred HHHHHHHHHhcccCc
Confidence 999999999977644
No 28
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=45.70 E-value=31 Score=33.09 Aligned_cols=33 Identities=30% Similarity=0.614 Sum_probs=30.4
Q ss_pred HHHHhhCCCCEEEEecCChHHHHHHHhcCCeEE
Q 011390 55 AQLLQSTIIDKVKIYDTNPEILEAFANTGIDLI 87 (487)
Q Consensus 55 ~~llk~~~~~~VRiY~~d~~vL~A~~~tgi~V~ 87 (487)
+|+|+..|+++||+....+.-+.++.+.||+|.
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 688999999999999988878889999999998
No 29
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=45.69 E-value=24 Score=37.53 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=29.9
Q ss_pred HHHHHhhCCCCEEEEecCChHHHHHHHhcCCeEE
Q 011390 54 VAQLLQSTIIDKVKIYDTNPEILEAFANTGIDLI 87 (487)
Q Consensus 54 v~~llk~~~~~~VRiY~~d~~vL~A~~~tgi~V~ 87 (487)
-+|+|+..|+++||+. .+|.-+.++.+.||+|.
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 3689999999999999 78888899999999997
No 30
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=41.84 E-value=1.7e+02 Score=30.68 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=50.9
Q ss_pred ccceEEeCCCCCCCCCHHHHHHHHhhCCCCEEEEecCChHHHHHHHhcCCeEEEEeccCcccccccChHHHHHHHhhccc
Q 011390 35 AGVGINYGTLGNNLPSPKKVAQLLQSTIIDKVKIYDTNPEILEAFANTGIDLIVAVENYHVSNISTDTASADEWLSTRVL 114 (487)
Q Consensus 35 ~~~GvnYg~~~~nlps~~~v~~llk~~~~~~VRiY~~d~~vL~A~~~tgi~V~vGv~n~~l~~~a~~~~~a~~wv~~~V~ 114 (487)
..+|||.-...++ +..++.++.+...+.+.|=+..-+|..++.++..||+|+.-|+ +...|..+++.-+
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~---------s~~~A~~a~~~Ga- 124 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVP---------SPGLLKQFLENGA- 124 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeC---------CHHHHHHHHHcCC-
Confidence 4578887444332 3345556666666677776655566567888899999997775 3456666665432
Q ss_pred ccCCCceEEEEEecccc
Q 011390 115 PFLPATSVVAIVVGNEY 131 (487)
Q Consensus 115 ~~~p~~~I~~I~VGNEv 131 (487)
+ ..|+-|.|.
T Consensus 125 -----D--~vVaqG~EA 134 (320)
T cd04743 125 -----R--KFIFEGREC 134 (320)
T ss_pred -----C--EEEEecCcC
Confidence 2 237889997
No 31
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=41.73 E-value=30 Score=36.76 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=29.9
Q ss_pred HHHHhhCCCCEEEEecCChHHHHHHHhcCCeEE
Q 011390 55 AQLLQSTIIDKVKIYDTNPEILEAFANTGIDLI 87 (487)
Q Consensus 55 ~~llk~~~~~~VRiY~~d~~vL~A~~~tgi~V~ 87 (487)
+|+|+..|+++||+.. +|.-+.++.+.||+|.
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~ 359 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVT 359 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEE
Confidence 6899999999999998 8988999999999997
No 32
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.66 E-value=2.6e+02 Score=27.29 Aligned_cols=89 Identities=15% Similarity=0.303 Sum_probs=56.6
Q ss_pred CCHHHHHHHHhhCCCCEEEEecCC---hHHHHHHHh--cCCeEEEEeccCcccccccChHHHHHHHhhcccccCCCceEE
Q 011390 49 PSPKKVAQLLQSTIIDKVKIYDTN---PEILEAFAN--TGIDLIVAVENYHVSNISTDTASADEWLSTRVLPFLPATSVV 123 (487)
Q Consensus 49 ps~~~v~~llk~~~~~~VRiY~~d---~~vL~A~~~--tgi~V~vGv~n~~l~~~a~~~~~a~~wv~~~V~~~~p~~~I~ 123 (487)
-+++++.+.+ +.|.+.|++|-++ ++-|+++++ .+++++. +. .+ +.+++.+|++. .+.
T Consensus 117 ~T~~E~~~A~-~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~a-tG--GI-----~~~N~~~~l~a---------Ga~ 178 (213)
T PRK06552 117 MTVTEIVTAL-EAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMV-TG--GV-----NLDNVKDWFAA---------GAD 178 (213)
T ss_pred CCHHHHHHHH-HcCCCEEEECCcccCCHHHHHHHhhhCCCCEEEE-EC--CC-----CHHHHHHHHHC---------CCc
Confidence 3688887776 4789999999655 467777774 3466553 11 11 24677788763 356
Q ss_pred EEEecccccccCCCccccCChHHHHHHHHHHHHHHH
Q 011390 124 AIVVGNEYLTADGNQMMRMNPKALVQAMQNMHAALL 159 (487)
Q Consensus 124 ~I~VGNEvl~~~~~~~~~~~~~~ll~am~nv~~aL~ 159 (487)
+|.||...+... ... +++.+-...++++++++
T Consensus 179 ~vavgs~l~~~~-~~~---~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 179 AVGIGGELNKLA-SQG---DFDLITEKAKKYMSSLR 210 (213)
T ss_pred EEEEchHHhCcc-ccC---CHHHHHHHHHHHHHHHH
Confidence 788998876432 111 15667777777766664
No 33
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=39.81 E-value=1.4e+02 Score=29.47 Aligned_cols=56 Identities=20% Similarity=0.407 Sum_probs=31.4
Q ss_pred echHHHHHHHHHHHHHHhcCCCCCceeEEEeeccCCCCCCC------CCCHHHHHHHHHHHHHHHHc
Q 011390 265 YTNMLDAQIDAVRTAINGLGFGNRSIKITVSESGWPSKGDS------AATPENAKTYNTRLIERAQS 325 (487)
Q Consensus 265 y~n~fda~~dav~~a~~k~g~~~~~~~vvVtETGWPS~G~~------~as~~na~~y~~~li~~~~~ 325 (487)
|.+-|+..+.....-...++++. +.|+. .|||.|.. ..+...+...+.++++.+..
T Consensus 27 yn~~f~~a~~r~aql~~~~~~~~--~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 27 YNNSFEDALRRAAQLAHDLGFPG--VVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCc--eEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 44445544443333345567766 55555 59999976 23334445555666666654
No 34
>PLN03059 beta-galactosidase; Provisional
Probab=37.89 E-value=6.4e+02 Score=30.04 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=68.5
Q ss_pred HHHHHhhCCCCEEEEecC------C------------hHHHHHHHhcCCeEEEEeccC---------------ccc--cc
Q 011390 54 VAQLLQSTIIDKVKIYDT------N------------PEILEAFANTGIDLIVAVENY---------------HVS--NI 98 (487)
Q Consensus 54 v~~llk~~~~~~VRiY~~------d------------~~vL~A~~~tgi~V~vGv~n~---------------~l~--~~ 98 (487)
.++.+|+.|++.|-+|-. . ..-|+.+++.||.|+|=.... ..+ .+
T Consensus 64 ~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~ 143 (840)
T PLN03059 64 LIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEF 143 (840)
T ss_pred HHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCccc
Confidence 455678899999999932 1 246677889999999854210 011 11
Q ss_pred c-cCh---HHHHHHHhhccc-----cc-C-CCceEEEEEecccccccCCCccccCChHHHHHHHHHHHHHHHHCCCCCce
Q 011390 99 S-TDT---ASADEWLSTRVL-----PF-L-PATSVVAIVVGNEYLTADGNQMMRMNPKALVQAMQNMHAALLARGLERKI 167 (487)
Q Consensus 99 a-~~~---~~a~~wv~~~V~-----~~-~-p~~~I~~I~VGNEvl~~~~~~~~~~~~~~ll~am~nv~~aL~~~gl~~~I 167 (487)
. +++ ++.++|+..-+. ++ + ....|..+=|-||.=.- .... ...-..+|+.+++.+++.|++ |
T Consensus 144 Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~--~~~~---~~~d~~Yl~~l~~~~~~~Gi~--V 216 (840)
T PLN03059 144 RTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPV--EWEI---GAPGKAYTKWAADMAVKLGTG--V 216 (840)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccce--eccc---CcchHHHHHHHHHHHHHcCCC--c
Confidence 1 122 345566554321 22 1 23579999999996321 1111 112257999999999999985 6
Q ss_pred EEecccc
Q 011390 168 KVTTPHS 174 (487)
Q Consensus 168 kVtT~~~ 174 (487)
+.-|.+.
T Consensus 217 Pl~t~dg 223 (840)
T PLN03059 217 PWVMCKQ 223 (840)
T ss_pred ceEECCC
Confidence 6655544
No 35
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=37.79 E-value=41 Score=35.41 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=31.4
Q ss_pred HHHHHHhhCCCCEEEEecCC-hHHHHHHHhcCCeEE
Q 011390 53 KVAQLLQSTIIDKVKIYDTN-PEILEAFANTGIDLI 87 (487)
Q Consensus 53 ~v~~llk~~~~~~VRiY~~d-~~vL~A~~~tgi~V~ 87 (487)
--.|+|+..|+++||+...+ |.-+.++.+.||+|.
T Consensus 299 igaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 299 IGAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 34789999999999999998 888889999999986
No 36
>PLN02998 beta-glucosidase
Probab=37.28 E-value=56 Score=36.15 Aligned_cols=45 Identities=16% Similarity=0.413 Sum_probs=34.5
Q ss_pred HHHHHHHhhCCCCEEEE-------ec-----CCh-------HHHHHHHhcCCeEEEEeccCccc
Q 011390 52 KKVAQLLQSTIIDKVKI-------YD-----TNP-------EILEAFANTGIDLIVAVENYHVS 96 (487)
Q Consensus 52 ~~v~~llk~~~~~~VRi-------Y~-----~d~-------~vL~A~~~tgi~V~vGv~n~~l~ 96 (487)
++.+++|+++|++.-|+ += .|+ +++.++.+.||+-+|.+.--+++
T Consensus 85 ~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP 148 (497)
T PLN02998 85 KEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLP 148 (497)
T ss_pred HHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 56789999999887775 21 232 68899999999999999855554
No 37
>PRK08815 GTP cyclohydrolase; Provisional
Probab=37.17 E-value=45 Score=35.57 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=32.1
Q ss_pred HHHHhhCCCCEEEEecCChHHHHHHHhcCCeEEEEe
Q 011390 55 AQLLQSTIIDKVKIYDTNPEILEAFANTGIDLIVAV 90 (487)
Q Consensus 55 ~~llk~~~~~~VRiY~~d~~vL~A~~~tgi~V~vGv 90 (487)
+|+|+..|+++||+...++.-+.++.+.||+|.=-+
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~v 340 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRI 340 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 688999999999999999988899999999997434
No 38
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=37.16 E-value=1e+02 Score=30.50 Aligned_cols=81 Identities=12% Similarity=0.164 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCeEEEEeccCcc---cccccChHHHHHHHhhcccccCCCceEEEEEecccccccCCCccccCChHHHHHH
Q 011390 74 EILEAFANTGIDLIVAVENYHV---SNISTDTASADEWLSTRVLPFLPATSVVAIVVGNEYLTADGNQMMRMNPKALVQA 150 (487)
Q Consensus 74 ~vL~A~~~tgi~V~vGv~n~~l---~~~a~~~~~a~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~~~~~~~~~~ll~a 150 (487)
..+++++..|++|++.|.+... ..+..++...+++++. |..+.....+.+|-+==|-.... ....+..
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~~~~DGIdiDwE~~~~~--------~~~~~~f 120 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVSYNLDGIDVDLEGPDVT--------FGDYLVF 120 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHHhCCCceeEEeeccCcc--------HhHHHHH
Confidence 4556777789999999876432 2233444444444432 22222112344444433433210 2456778
Q ss_pred HHHHHHHHHHCCC
Q 011390 151 MQNMHAALLARGL 163 (487)
Q Consensus 151 m~nv~~aL~~~gl 163 (487)
|+++|++|++.|+
T Consensus 121 v~~Lr~~l~~~~~ 133 (253)
T cd06545 121 IRALYAALKKEGK 133 (253)
T ss_pred HHHHHHHHhhcCc
Confidence 9999999987664
No 39
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=37.12 E-value=46 Score=35.69 Aligned_cols=38 Identities=29% Similarity=0.493 Sum_probs=33.0
Q ss_pred HHHHHhhCCCCEEEEecCChHHHHHHHhcCCeEEEEec
Q 011390 54 VAQLLQSTIIDKVKIYDTNPEILEAFANTGIDLIVAVE 91 (487)
Q Consensus 54 v~~llk~~~~~~VRiY~~d~~vL~A~~~tgi~V~vGv~ 91 (487)
-+|+|+..|+++||+...++.-+.++.+.||+|.=-++
T Consensus 319 gAqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 319 AFQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 36889999999999999999999999999999984443
No 40
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=36.52 E-value=46 Score=36.42 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=32.4
Q ss_pred HHHHHhhCCCCEEEEecCChHHHHHHHhcCCeEEEEe
Q 011390 54 VAQLLQSTIIDKVKIYDTNPEILEAFANTGIDLIVAV 90 (487)
Q Consensus 54 v~~llk~~~~~~VRiY~~d~~vL~A~~~tgi~V~vGv 90 (487)
-.|+|+..|+++||+...++.-+.++.+.||+|.=-+
T Consensus 372 gAqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~v 408 (450)
T PLN02831 372 GAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRV 408 (450)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEe
Confidence 3689999999999999999999999999999997333
No 41
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.33 E-value=1.7e+02 Score=31.90 Aligned_cols=134 Identities=13% Similarity=0.232 Sum_probs=76.2
Q ss_pred CccceEEeCCCCCCCCC----HHHHHHHH-hhCCCCEEEEecCCh-----HHHHHHHhc-CCeEEEEeccCcccccccCh
Q 011390 34 VAGVGINYGTLGNNLPS----PKKVAQLL-QSTIIDKVKIYDTNP-----EILEAFANT-GIDLIVAVENYHVSNISTDT 102 (487)
Q Consensus 34 ~~~~GvnYg~~~~nlps----~~~v~~ll-k~~~~~~VRiY~~d~-----~vL~A~~~t-gi~V~vGv~n~~l~~~a~~~ 102 (487)
-..+|.|-+.||.|++. -.+.++.| +-.|+.+||+=..+| +++.|++.+ .+-=.+-+|- ++-
T Consensus 193 I~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPv---QsG---- 265 (437)
T COG0621 193 IVLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPV---QSG---- 265 (437)
T ss_pred EEEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCcc---ccC----
Confidence 34578998889888753 33444333 335789999987664 788888864 3222333331 111
Q ss_pred HHHHHHHhhcccccCCCceEEEEEecccccccCCCccccCChHHHHHHHHHHHHHHHHCCCCCceEEecccccccccccC
Q 011390 103 ASADEWLSTRVLPFLPATSVVAIVVGNEYLTADGNQMMRMNPKALVQAMQNMHAALLARGLERKIKVTTPHSMAVLASSF 182 (487)
Q Consensus 103 ~~a~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~~~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVtT~~~~~vl~~s~ 182 (487)
++.|- ..|.|. .. ..+.+..++.+|++.....++.+|-|+ |
T Consensus 266 ----------------sd~IL------k~M~R~---yt---~e~~~~~i~k~R~~~Pd~~i~tDiIVG-----------F 306 (437)
T COG0621 266 ----------------SDRIL------KRMKRG---YT---VEEYLEIIEKLRAARPDIAISTDIIVG-----------F 306 (437)
T ss_pred ----------------CHHHH------HHhCCC---cC---HHHHHHHHHHHHHhCCCceEeccEEEE-----------C
Confidence 01110 123343 12 677888888888876544333333333 4
Q ss_pred CCCCcccCCCcchhHHHHHHHHHhcCCCccccCCCCCcc
Q 011390 183 PPSASTFAPDITPTMTSILAFLADTGAPFMVNAYPYFAY 221 (487)
Q Consensus 183 pPS~g~F~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~~ 221 (487)
| -|..+.....++|+. ..-|=.+|+++|=..
T Consensus 307 P-------gETeedFe~tl~lv~-e~~fd~~~~F~YSpR 337 (437)
T COG0621 307 P-------GETEEDFEETLDLVE-EVRFDRLHVFKYSPR 337 (437)
T ss_pred C-------CCCHHHHHHHHHHHH-HhCCCEEeeeecCCC
Confidence 3 233344667777765 455777888887654
No 42
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=35.91 E-value=48 Score=37.13 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=33.4
Q ss_pred HHHHHhhCCCCEEEEecCChHHHHHHHhcCCeEEEEec
Q 011390 54 VAQLLQSTIIDKVKIYDTNPEILEAFANTGIDLIVAVE 91 (487)
Q Consensus 54 v~~llk~~~~~~VRiY~~d~~vL~A~~~tgi~V~vGv~ 91 (487)
.+++|+..|+++||+...+|.=+.++.+.||+|.=-++
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 36899999999999999999999999999999974443
No 43
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=35.76 E-value=49 Score=35.66 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=31.7
Q ss_pred HHHHHhhCCCCEEEEecCChHHHHHHHhcCCeEEE
Q 011390 54 VAQLLQSTIIDKVKIYDTNPEILEAFANTGIDLIV 88 (487)
Q Consensus 54 v~~llk~~~~~~VRiY~~d~~vL~A~~~tgi~V~v 88 (487)
.+++|+..|+++||+...++.-+.++.+.||+|.=
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~ 372 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTE 372 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEE
Confidence 36889999999999999999889999999999973
No 44
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=35.13 E-value=62 Score=30.38 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCeEEEEecc
Q 011390 74 EILEAFANTGIDLIVAVEN 92 (487)
Q Consensus 74 ~vL~A~~~tgi~V~vGv~n 92 (487)
.+|+++.+.||+|+||++-
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYF 87 (166)
T ss_pred HHHHHHHHcCCEEEEeCCC
Confidence 6788999999999999984
No 45
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=34.64 E-value=1.7e+02 Score=32.15 Aligned_cols=46 Identities=15% Similarity=0.341 Sum_probs=35.0
Q ss_pred HHHHHHHHhhCCCCEEEE-------ec------CCh-------HHHHHHHhcCCeEEEEeccCccc
Q 011390 51 PKKVAQLLQSTIIDKVKI-------YD------TNP-------EILEAFANTGIDLIVAVENYHVS 96 (487)
Q Consensus 51 ~~~v~~llk~~~~~~VRi-------Y~------~d~-------~vL~A~~~tgi~V~vGv~n~~l~ 96 (487)
-++.+++|+++|++.-|+ +- .|+ +++.+|.+.||+-+|.+.--+++
T Consensus 75 y~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP 140 (478)
T PRK09593 75 YKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCP 140 (478)
T ss_pred hHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCC
Confidence 467899999999877765 31 132 58889999999999999865555
No 46
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=33.55 E-value=1.7e+02 Score=32.43 Aligned_cols=91 Identities=12% Similarity=0.113 Sum_probs=56.2
Q ss_pred HHHHhhcccccCCCceEEEEEecccccccCCCccccCChHHHHHHHHHHHHHHHHCCCCCceEEecccccccccccCCCC
Q 011390 106 DEWLSTRVLPFLPATSVVAIVVGNEYLTADGNQMMRMNPKALVQAMQNMHAALLARGLERKIKVTTPHSMAVLASSFPPS 185 (487)
Q Consensus 106 ~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~~~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVtT~~~~~vl~~s~pPS 185 (487)
...+..-|.+|--...|.+-..-||.+.+. ... ...++...+.+...++..+-++-|.|+ +...-|.. |-|-
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~--p~s---~N~f~~w~~emy~yiK~ldd~hlvsvG--D~~sp~~~-~~py 194 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEA--PIS---VNNFWDWSGEMYAYIKWLDDGHLVSVG--DPASPWPQ-YAPY 194 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccc--cCC---hhHHHHHHHHHHHHhhccCCCCeeecC--CcCCcccc-cCCc
Confidence 345555566665455677778889977653 223 677888888888888887766544444 33222322 2222
Q ss_pred CcccCCCcchhHHHHHHHHHhcCCCccccCCCCCcc
Q 011390 186 ASTFAPDITPTMTSILAFLADTGAPFMVNAYPYFAY 221 (487)
Q Consensus 186 ~g~F~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~~ 221 (487)
.+.| ++||-.-++||+|..
T Consensus 195 N~r~-----------------~vDya~~hLY~hyd~ 213 (587)
T COG3934 195 NARF-----------------YVDYAANHLYRHYDT 213 (587)
T ss_pred ccce-----------------eeccccchhhhhccC
Confidence 2222 566778899997664
No 47
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.15 E-value=2.8e+02 Score=26.54 Aligned_cols=129 Identities=12% Similarity=0.136 Sum_probs=61.0
Q ss_pred HHHHHHHHhhCCCCEEEEecCCh---------HHHHHHHhcCCeEEEE--eccCcccccccChHHHHHHHhhcccccCCC
Q 011390 51 PKKVAQLLQSTIIDKVKIYDTNP---------EILEAFANTGIDLIVA--VENYHVSNISTDTASADEWLSTRVLPFLPA 119 (487)
Q Consensus 51 ~~~v~~llk~~~~~~VRiY~~d~---------~vL~A~~~tgi~V~vG--v~n~~l~~~a~~~~~a~~wv~~~V~~~~p~ 119 (487)
...+++.|...|.++|=+..... ...++++..|+++.+- .+.....+.......+.+|++++ +
T Consensus 97 g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~- 170 (265)
T cd01543 97 GRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-----P- 170 (265)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-----C-
Confidence 34556667777888776664321 2334666778776211 11111111112234555666542 1
Q ss_pred ceEEEEEecccccccCCCccccCChHHHHHHHHHHHHHHHHCCC--CCceEEecccccccccccCCCCCcccCCCcchhH
Q 011390 120 TSVVAIVVGNEYLTADGNQMMRMNPKALVQAMQNMHAALLARGL--ERKIKVTTPHSMAVLASSFPPSASTFAPDITPTM 197 (487)
Q Consensus 120 ~~I~~I~VGNEvl~~~~~~~~~~~~~~ll~am~nv~~aL~~~gl--~~~IkVtT~~~~~vl~~s~pPS~g~F~~~~~~~~ 197 (487)
.+++|++.|+.+.. - +.++|++.|+ .++|.|.+-+....+..-..|.-.+...+....-
T Consensus 171 -~~~ai~~~~d~~a~-----------g-------~~~~l~~~g~~vp~di~vigfd~~~~~~~~~~~~ltti~~~~~~~g 231 (265)
T cd01543 171 -KPVGIFACTDARAR-----------Q-------LLEACRRAGIAVPEEVAVLGVDNDELICELSRPPLSSVEQNAERIG 231 (265)
T ss_pred -CCcEEEecChHHHH-----------H-------HHHHHHHhCCCCCCceEEEeeCCchhhhccCCCCCceeecCHHHHH
Confidence 25677776655432 1 2244555565 4567766555443322222233344444443333
Q ss_pred HHHHHHH
Q 011390 198 TSILAFL 204 (487)
Q Consensus 198 ~~~l~fL 204 (487)
+..++.|
T Consensus 232 ~~a~~~l 238 (265)
T cd01543 232 YEAAKLL 238 (265)
T ss_pred HHHHHHH
Confidence 4444444
No 48
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=33.04 E-value=1.3e+02 Score=36.30 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=56.4
Q ss_pred ceEEeCCCCC---CCCCHHH---HHHHHhhCCCCEEEEec--CChHHHHHHHhcCCeEEEEeccCc-----ccccccChH
Q 011390 37 VGINYGTLGN---NLPSPKK---VAQLLQSTIIDKVKIYD--TNPEILEAFANTGIDLIVAVENYH-----VSNISTDTA 103 (487)
Q Consensus 37 ~GvnYg~~~~---nlps~~~---v~~llk~~~~~~VRiY~--~d~~vL~A~~~tgi~V~vGv~n~~-----l~~~a~~~~ 103 (487)
.|+|+-.... ...++++ .++++|..|++.||+-. .++..+..+...||-|+--++.+. ...+..++.
T Consensus 353 rGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~ 432 (1027)
T PRK09525 353 RGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPR 432 (1027)
T ss_pred EEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCHH
Confidence 5777643211 1245554 45677999999999954 357899999999998886654211 011222222
Q ss_pred ---HHHHHHhhcccccCCCceEEEEEecccc
Q 011390 104 ---SADEWLSTRVLPFLPATSVVAIVVGNEY 131 (487)
Q Consensus 104 ---~a~~wv~~~V~~~~p~~~I~~I~VGNEv 131 (487)
+..+-+++.|......-.|..-++|||.
T Consensus 433 ~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~ 463 (1027)
T PRK09525 433 WLPAMSERVTRMVQRDRNHPSIIIWSLGNES 463 (1027)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEeCccCC
Confidence 1222233444443322358889999996
No 49
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=32.62 E-value=74 Score=33.31 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCeEEEEeccCcccccccChHHHHHHHhhcccccCCCceEEEEEecccccccCCCccccCChHHHHHHHHH
Q 011390 74 EILEAFANTGIDLIVAVENYHVSNISTDTASADEWLSTRVLPFLPATSVVAIVVGNEYLTADGNQMMRMNPKALVQAMQN 153 (487)
Q Consensus 74 ~vL~A~~~tgi~V~vGv~n~~l~~~a~~~~~a~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~~~~~~~~~~ll~am~n 153 (487)
.||+++.+.|-.+.+|=. ..... +++.|.+|+...+..++ ..|.+|+.-|.-...+
T Consensus 176 ~VLkp~idsGkik~~Ge~--~~d~W--~ps~Aq~~men~lta~~--~~vdaVvA~nDgtagG------------------ 231 (341)
T COG4213 176 KVLKPLIDSGKIKVVGEQ--WTDGW--LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAGG------------------ 231 (341)
T ss_pred HHHHHHhhCCceEEeeec--ccccc--CHHHHHHHHHHHHhccc--CceeEEEcCCCchhHH------------------
Confidence 799988888755556642 22333 46788899988777765 3488888776633221
Q ss_pred HHHHHHHCCCCCceEEecc
Q 011390 154 MHAALLARGLERKIKVTTP 172 (487)
Q Consensus 154 v~~aL~~~gl~~~IkVtT~ 172 (487)
+-++|++.||.++++||=-
T Consensus 232 aI~aL~a~Gl~g~vpVsGQ 250 (341)
T COG4213 232 AIAALKAQGLAGKVPVSGQ 250 (341)
T ss_pred HHHHHHhcccCCCCcccCc
Confidence 1257889999988987743
No 50
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=32.32 E-value=2e+02 Score=30.59 Aligned_cols=59 Identities=12% Similarity=0.233 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHCCCCCceEEecccccccccccCCCCCcccCCCcchhHHHHHHHHHhcCCCccccCCCCCcc
Q 011390 144 PKALVQAMQNMHAALLARGLERKIKVTTPHSMAVLASSFPPSASTFAPDITPTMTSILAFLADTGAPFMVNAYPYFAY 221 (487)
Q Consensus 144 ~~~ll~am~nv~~aL~~~gl~~~IkVtT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~~ 221 (487)
.+++..+++.+|+.. . .|.|++..-+ .+| .|..+.+...++|+.+.. +-.+++|||--+
T Consensus 272 ~~~~~~~v~~l~~~~--~----gi~i~~~~Iv-----G~P-------gET~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 272 RDDFLKLVNKLRSVR--P----DYAFGTDIIV-----GFP-------GESEEDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred HHHHHHHHHHHHHhC--C----CCeeeeeEEE-----ECC-------CCCHHHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 567777887777642 1 2445543221 232 233455888899987653 455677766544
No 51
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=32.00 E-value=66 Score=34.88 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHCCCC
Q 011390 144 PKALVQAMQNMHAALLARGLE 164 (487)
Q Consensus 144 ~~~ll~am~nv~~aL~~~gl~ 164 (487)
..+.+..++.+.+.|.++||.
T Consensus 262 ~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 262 AEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCE
Confidence 456678888899999999995
No 52
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=31.88 E-value=92 Score=34.69 Aligned_cols=72 Identities=19% Similarity=0.347 Sum_probs=47.4
Q ss_pred CCCCCceeEEEeeccCCCCCCC----------CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcceEEEEEeec-CCCCCC
Q 011390 284 GFGNRSIKITVSESGWPSKGDS----------AATPENAKTYNTRLIERAQSNKGTPMRPKENIEVFVFALFN-ENKKEG 352 (487)
Q Consensus 284 g~~~~~~~vvVtETGWPS~G~~----------~as~~na~~y~~~li~~~~~~~Gtp~rpg~~i~~yiF~~FD-E~wK~g 352 (487)
.|+| ++|.|+|-|-+...+. ..-.+-.+.|++.+.+.+.. .|.- ..-+|+.++-| =.|..|
T Consensus 404 ~Y~n--p~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgvn-----v~GYf~WSLmDnfEw~~G 475 (524)
T KOG0626|consen 404 KYGN--PPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGVN-----VKGYFVWSLLDNFEWLDG 475 (524)
T ss_pred hcCC--CcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCCc-----eeeEEEeEcccchhhhcC
Confidence 4778 9999999999987543 12233456666667666653 2311 23478888887 346554
Q ss_pred CCCCCceeeccCC
Q 011390 353 GVSERNFGIFNGD 365 (487)
Q Consensus 353 ~~~E~~wGlf~~d 365 (487)
..-.|||++.|
T Consensus 476 --y~~RFGlyyVD 486 (524)
T KOG0626|consen 476 --YKVRFGLYYVD 486 (524)
T ss_pred --cccccccEEEe
Confidence 67889999864
No 53
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=30.99 E-value=1.7e+02 Score=32.11 Aligned_cols=46 Identities=13% Similarity=0.326 Sum_probs=34.9
Q ss_pred HHHHHHHHhhCCCCEEEE-------ec------CCh-------HHHHHHHhcCCeEEEEeccCccc
Q 011390 51 PKKVAQLLQSTIIDKVKI-------YD------TNP-------EILEAFANTGIDLIVAVENYHVS 96 (487)
Q Consensus 51 ~~~v~~llk~~~~~~VRi-------Y~------~d~-------~vL~A~~~tgi~V~vGv~n~~l~ 96 (487)
-++.+++|+++|++.-|+ += .++ +++.+|.+.||+-+|.+.--+++
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 467889999998877764 31 232 68889999999999999865554
No 54
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.84 E-value=2.8e+02 Score=29.91 Aligned_cols=57 Identities=12% Similarity=0.256 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHCCCCCceEEecccccccccccCCCCCcccCCCcchhHHHHHHHHHhcCCCccccCCCCC
Q 011390 144 PKALVQAMQNMHAALLARGLERKIKVTTPHSMAVLASSFPPSASTFAPDITPTMTSILAFLADTGAPFMVNAYPYF 219 (487)
Q Consensus 144 ~~~ll~am~nv~~aL~~~gl~~~IkVtT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf 219 (487)
.++++.+++.+|++. . .+.+++.. +- .+| .+-.+.+...++|+.+. .+-.+++|+|-
T Consensus 271 ~~~~~~~v~~lr~~~----~--~i~i~~d~----Iv-G~P-------gEt~ed~~~tl~~i~~l-~~~~i~~f~ys 327 (440)
T PRK14334 271 REKYLERIAEIREAL----P--DVVLSTDI----IV-GFP-------GETEEDFQETLSLYDEV-GYDSAYMFIYS 327 (440)
T ss_pred HHHHHHHHHHHHHhC----C--CcEEEEeE----EE-ECC-------CCCHHHHHHHHHHHHhc-CCCEeeeeEee
Confidence 667778888777653 2 24455432 22 122 22334577888888764 34456666643
No 55
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=30.69 E-value=1.1e+02 Score=26.76 Aligned_cols=36 Identities=14% Similarity=0.305 Sum_probs=27.6
Q ss_pred HHHHHHHhhCCCCEEEEec--CC---hHHHHHHHhcCCeEE
Q 011390 52 KKVAQLLQSTIIDKVKIYD--TN---PEILEAFANTGIDLI 87 (487)
Q Consensus 52 ~~v~~llk~~~~~~VRiY~--~d---~~vL~A~~~tgi~V~ 87 (487)
+++.+.++.+|+..|+++- .. ..+|++|+..||+|.
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~ 90 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVT 90 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 3455667789999999983 33 479999999999865
No 56
>PLN02814 beta-glucosidase
Probab=30.55 E-value=84 Score=34.83 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=34.8
Q ss_pred HHHHHHHHhhCCCCEEEE-------ec-----CCh-------HHHHHHHhcCCeEEEEeccCccc
Q 011390 51 PKKVAQLLQSTIIDKVKI-------YD-----TNP-------EILEAFANTGIDLIVAVENYHVS 96 (487)
Q Consensus 51 ~~~v~~llk~~~~~~VRi-------Y~-----~d~-------~vL~A~~~tgi~V~vGv~n~~l~ 96 (487)
-++.+++||++|++.-|+ += .|+ +++.++.+.||+-+|.+.--+++
T Consensus 79 y~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP 143 (504)
T PLN02814 79 YKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLP 143 (504)
T ss_pred hHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 357889999998877764 31 132 68899999999999999855555
No 57
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=30.11 E-value=1.1e+02 Score=27.62 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=35.7
Q ss_pred HHHHHHhhCCCCEEEEecCChHHHHHHHhcCCeEEEEec
Q 011390 53 KVAQLLQSTIIDKVKIYDTNPEILEAFANTGIDLIVAVE 91 (487)
Q Consensus 53 ~v~~llk~~~~~~VRiY~~d~~vL~A~~~tgi~V~vGv~ 91 (487)
.+.++|+.+|++.|=+-..-+..+.+|++.||+|+.+-.
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 578999999999998888889999999999999999876
No 58
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=30.07 E-value=76 Score=30.85 Aligned_cols=38 Identities=26% Similarity=0.444 Sum_probs=34.0
Q ss_pred HHHHhhCCCCEEEEecCChHHHHHHHhcCCeEEEEecc
Q 011390 55 AQLLQSTIIDKVKIYDTNPEILEAFANTGIDLIVAVEN 92 (487)
Q Consensus 55 ~~llk~~~~~~VRiY~~d~~vL~A~~~tgi~V~vGv~n 92 (487)
+++|+..||++||+-..+|.=..++.+.||+|.=-++.
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~ 170 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPL 170 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeec
Confidence 57889999999999999998899999999999877764
No 59
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=28.13 E-value=1.8e+02 Score=32.08 Aligned_cols=46 Identities=9% Similarity=0.296 Sum_probs=34.3
Q ss_pred HHHHHHHHhhCCCCEEEE-------ec------CCh-------HHHHHHHhcCCeEEEEeccCccc
Q 011390 51 PKKVAQLLQSTIIDKVKI-------YD------TNP-------EILEAFANTGIDLIVAVENYHVS 96 (487)
Q Consensus 51 ~~~v~~llk~~~~~~VRi-------Y~------~d~-------~vL~A~~~tgi~V~vGv~n~~l~ 96 (487)
-++.+++|+++|++..|+ +- .|+ ++|.++.+.||+.+|.+.-.+++
T Consensus 71 y~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP 136 (477)
T PRK15014 71 YKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMP 136 (477)
T ss_pred cHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 467899999988776664 31 232 68899999999999999644443
No 60
>PRK07198 hypothetical protein; Validated
Probab=27.94 E-value=51 Score=35.45 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=32.6
Q ss_pred HHHHhhCCCCEE-EEecCChHHHHHHHhcCCeEEEEec
Q 011390 55 AQLLQSTIIDKV-KIYDTNPEILEAFANTGIDLIVAVE 91 (487)
Q Consensus 55 ~~llk~~~~~~V-RiY~~d~~vL~A~~~tgi~V~vGv~ 91 (487)
.|+|+.+|+++| |+...++.-+.++.+.||+|.=-|+
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 578999999999 9999999899999999999974443
No 61
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=27.60 E-value=2.2e+02 Score=31.53 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=52.9
Q ss_pred hcCCeEEEEec--------cCccc---cccc---C-h-HHHHHHHhhcccccCC-CceEEEEEecccccccC---CC-cc
Q 011390 81 NTGIDLIVAVE--------NYHVS---NIST---D-T-ASADEWLSTRVLPFLP-ATSVVAIVVGNEYLTAD---GN-QM 139 (487)
Q Consensus 81 ~tgi~V~vGv~--------n~~l~---~~a~---~-~-~~a~~wv~~~V~~~~p-~~~I~~I~VGNEvl~~~---~~-~~ 139 (487)
+.+|+|+..-| |..+. .+.. + . +.=...+.+-|+.|-. +..|-+|++.||+.... .. +.
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s 245 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPS 245 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC-
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCc
Confidence 45799999988 22221 1211 1 1 1222334455666532 47899999999998621 00 12
Q ss_pred ccCChHHHHHHHHH-HHHHHHHCCCCCceEEe-cccc
Q 011390 140 MRMNPKALVQAMQN-MHAALLARGLERKIKVT-TPHS 174 (487)
Q Consensus 140 ~~~~~~~ll~am~n-v~~aL~~~gl~~~IkVt-T~~~ 174 (487)
+...+++....|++ +.-+|++.++..++||- -.|+
T Consensus 246 ~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n 282 (496)
T PF02055_consen 246 MGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHN 282 (496)
T ss_dssp -B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecC
Confidence 22237888888886 99999999995568863 3444
No 62
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=27.50 E-value=2.2e+02 Score=28.68 Aligned_cols=66 Identities=26% Similarity=0.216 Sum_probs=40.1
Q ss_pred CHHHHHHHHhhCCCCEEEEecCChHHHHHHHhcCCeEEEEeccCcccccccChHHHHHHHhhcccccCCCceEEEEEecc
Q 011390 50 SPKKVAQLLQSTIIDKVKIYDTNPEILEAFANTGIDLIVAVENYHVSNISTDTASADEWLSTRVLPFLPATSVVAIVVGN 129 (487)
Q Consensus 50 s~~~v~~llk~~~~~~VRiY~~d~~vL~A~~~tgi~V~vGv~n~~l~~~a~~~~~a~~wv~~~V~~~~p~~~I~~I~VGN 129 (487)
.+.|++.+|.++||+.-|.= -++.|.. +-|.. ++..+|.+|++.+=.|.-+.+++.-|.=.+
T Consensus 32 eANemlAlL~~~gI~A~K~~---------~~~g~~~--l~Ve~-------~~fa~Av~iL~~~GlPr~~f~~l~d~Fp~d 93 (246)
T COG4669 32 EANEMLALLMSHGINAEKKA---------DKDGGTS--LLVEE-------SDFAEAVEILNQNGLPRKKFTTLGDIFPKD 93 (246)
T ss_pred HHHHHHHHHHHcCCcceeec---------cCCCceE--EEEcH-------HHHHHHHHHHHhcCCCCCCCCcHHHhCCcc
Confidence 46789999999999888871 1222322 44432 245688899998866655555554444444
Q ss_pred cccc
Q 011390 130 EYLT 133 (487)
Q Consensus 130 Evl~ 133 (487)
--+.
T Consensus 94 gLVs 97 (246)
T COG4669 94 GLVS 97 (246)
T ss_pred cccC
Confidence 4433
No 63
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=27.23 E-value=81 Score=32.50 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=52.0
Q ss_pred ceEEEEEecccccc----cCCCccccCChHHHHHHHHHHHHHHHHCCCCCceEEecccccccccccCCCCCc----ccCC
Q 011390 120 TSVVAIVVGNEYLT----ADGNQMMRMNPKALVQAMQNMHAALLARGLERKIKVTTPHSMAVLASSFPPSAS----TFAP 191 (487)
Q Consensus 120 ~~I~~I~VGNEvl~----~~~~~~~~~~~~~ll~am~nv~~aL~~~gl~~~IkVtT~~~~~vl~~s~pPS~g----~F~~ 191 (487)
..|..++||.|-.- |...... ..+..|...+.+||+.| ...+|||-+-.|+.+.. +.|..| .|+
T Consensus 18 ggVdaF~IGSEl~gLT~iR~~~~~f-PaV~~l~~LAa~VR~il-----G~~~kitYAADWsEY~~-~~p~dg~gd~~f~- 89 (299)
T PF13547_consen 18 GGVDAFCIGSELRGLTRIRDGAGSF-PAVEALRALAADVRAIL-----GPGTKITYAADWSEYFG-YQPADGSGDVYFH- 89 (299)
T ss_pred CCCcEEEEchhhhhheeecCCCCCC-cHHHHHHHHHHHHHHHh-----CCCceEEEeccCHHhcC-cCCCCCCCccccc-
Confidence 46889999999753 2111111 12467888888888887 33588999999988864 434433 343
Q ss_pred CcchhHHHHHHHHHhcCCCccccCCC
Q 011390 192 DITPTMTSILAFLADTGAPFMVNAYP 217 (487)
Q Consensus 192 ~~~~~~~~~l~fL~~~~d~~~vN~yP 217 (487)
|.|+. -....|+++|+.|.
T Consensus 90 -----LDpLW--a~~~IDfIGID~Y~ 108 (299)
T PF13547_consen 90 -----LDPLW--ADPNIDFIGIDNYF 108 (299)
T ss_pred -----Ccccc--cCCcCCEEEeeccc
Confidence 22322 13467888888774
No 64
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=26.78 E-value=2.1e+02 Score=29.12 Aligned_cols=125 Identities=16% Similarity=0.230 Sum_probs=61.9
Q ss_pred HHHHHh--cCCeEEEEecc----CcccccccChHHHHHHHhhcccccCCCceEEEEEecccccccCCCccccCChHHHHH
Q 011390 76 LEAFAN--TGIDLIVAVEN----YHVSNISTDTASADEWLSTRVLPFLPATSVVAIVVGNEYLTADGNQMMRMNPKALVQ 149 (487)
Q Consensus 76 L~A~~~--tgi~V~vGv~n----~~l~~~a~~~~~a~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~~~~~~~~~~ll~ 149 (487)
|.+++. .+++|++.|.. +....+.++...-+++++ +|..+.-.-.+.+|-+==|..... + .. ...++.
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~~-~-~d---~~~~~~ 130 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGAR-G-DD---RENYTA 130 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCCC-c-cH---HHHHHH
Confidence 455665 49999999875 223344444433333332 222222122456666644443221 0 11 456888
Q ss_pred HHHHHHHHHHHCCC-CCceEEecccccccccccCCCCCcccCCCcchhHHHHHHHHHhcCCCccccCCCCCc
Q 011390 150 AMQNMHAALLARGL-ERKIKVTTPHSMAVLASSFPPSASTFAPDITPTMTSILAFLADTGAPFMVNAYPYFA 220 (487)
Q Consensus 150 am~nv~~aL~~~gl-~~~IkVtT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~ 220 (487)
.|+.+|+.|.+... .....++.+.. |...... ...+.+.-|.+..|++.|-.|=|..
T Consensus 131 ll~~lr~~l~~~~~~~~~~~lsi~v~---------~~~~~~~-----~~~~~~~~l~~~vD~v~vm~YD~~~ 188 (334)
T smart00636 131 LLKELREALDKEGAEGKGYLLTIAVP---------AGPDKID-----KGYGDLPAIAKYLDFINLMTYDFHG 188 (334)
T ss_pred HHHHHHHHHHHhcccCCceEEEEEec---------CChHHHH-----hhhhhHHHHHhhCcEEEEeeeccCC
Confidence 99999999976410 01123443322 1111000 0001023467788999888876654
No 65
>PLN02849 beta-glucosidase
Probab=26.68 E-value=1.1e+02 Score=33.94 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=34.6
Q ss_pred HHHHHHHHhhCCCCEEEE-------ec-----CCh-------HHHHHHHhcCCeEEEEeccCccc
Q 011390 51 PKKVAQLLQSTIIDKVKI-------YD-----TNP-------EILEAFANTGIDLIVAVENYHVS 96 (487)
Q Consensus 51 ~~~v~~llk~~~~~~VRi-------Y~-----~d~-------~vL~A~~~tgi~V~vGv~n~~l~ 96 (487)
-++.+++|+++|++.-|+ +- .|+ +++.++.+.||+-+|.+.--+++
T Consensus 81 Y~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP 145 (503)
T PLN02849 81 YKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHP 145 (503)
T ss_pred HHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCc
Confidence 356789999999877764 31 132 68899999999999999755554
No 66
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=26.50 E-value=2e+02 Score=29.89 Aligned_cols=116 Identities=12% Similarity=0.258 Sum_probs=58.2
Q ss_pred cCCeEEEEeccC-----cccccccChHHHHHHHhhcccccCCCceEEEEEecccccccC-CCccccCChHHHHHHHHHHH
Q 011390 82 TGIDLIVAVENY-----HVSNISTDTASADEWLSTRVLPFLPATSVVAIVVGNEYLTAD-GNQMMRMNPKALVQAMQNMH 155 (487)
Q Consensus 82 tgi~V~vGv~n~-----~l~~~a~~~~~a~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~-~~~~~~~~~~~ll~am~nv~ 155 (487)
.+++|++.|... ....++++.....++++.. ..+...-.+.+|-+==|..... ...+. ...++..|+.+|
T Consensus 69 p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~i-v~~l~~~~~DGidiDwE~p~~~~~~~~d---~~~~~~ll~~lr 144 (362)
T cd02872 69 PNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSA-IAFLRKYGFDGLDLDWEYPGQRGGPPED---KENFVTLLKELR 144 (362)
T ss_pred CCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHH-HHHHHHcCCCCeeeeeeccccCCCCHHH---HHHHHHHHHHHH
Confidence 689999988532 2334455544433343322 2221111344444433332210 01111 456889999999
Q ss_pred HHHHHCCCCCceEEeccccc--ccccccCCCCCcccCCCcchhHHHHHHHHHhcCCCccccCCCCCc
Q 011390 156 AALLARGLERKIKVTTPHSM--AVLASSFPPSASTFAPDITPTMTSILAFLADTGAPFMVNAYPYFA 220 (487)
Q Consensus 156 ~aL~~~gl~~~IkVtT~~~~--~vl~~s~pPS~g~F~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~ 220 (487)
++|++.+- ...++.+... ..+...| + +. -|.+..|++.|-.|-|+.
T Consensus 145 ~~l~~~~~--~~~ls~av~~~~~~~~~~~---------d----~~----~l~~~vD~v~vmtYD~~~ 192 (362)
T cd02872 145 EAFEPEAP--RLLLTAAVSAGKETIDAAY---------D----IP----EISKYLDFINVMTYDFHG 192 (362)
T ss_pred HHHHhhCc--CeEEEEEecCChHHHhhcC---------C----HH----HHhhhcceEEEecccCCC
Confidence 99998731 1224433221 1111111 1 21 256678898888887764
No 67
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.49 E-value=1e+02 Score=29.06 Aligned_cols=59 Identities=24% Similarity=0.425 Sum_probs=38.3
Q ss_pred EEEEecCCh-HHHHHH----H--hcCCeEEEEeccCcccccccChHHHHHHHhhcccccCCCceEEEEEecccc
Q 011390 65 KVKIYDTNP-EILEAF----A--NTGIDLIVAVENYHVSNISTDTASADEWLSTRVLPFLPATSVVAIVVGNEY 131 (487)
Q Consensus 65 ~VRiY~~d~-~vL~A~----~--~tgi~V~vGv~n~~l~~~a~~~~~a~~wv~~~V~~~~p~~~I~~I~VGNEv 131 (487)
++.|||+.. ++++.+ - ..|+-+|-.+.|++ +..+..+|+. .|.. |.|.++..|.|||.-
T Consensus 71 klQiwDTagqEryrtiTTayyRgamgfiLmyDitNee------Sf~svqdw~t-qIkt-ysw~naqvilvgnKC 136 (193)
T KOG0093|consen 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE------SFNSVQDWIT-QIKT-YSWDNAQVILVGNKC 136 (193)
T ss_pred EEEEEecccchhhhHHHHHHhhccceEEEEEecCCHH------HHHHHHHHHH-Hhee-eeccCceEEEEeccc
Confidence 456788763 444332 1 24666777776653 4456678874 3444 478899999999975
No 68
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=26.20 E-value=4.1e+02 Score=25.69 Aligned_cols=97 Identities=16% Similarity=0.305 Sum_probs=56.8
Q ss_pred CHHHHHHHHhhCCCCEEEEecCC-----hHHHHHHHhcCCeEEEEeccCcccccccChHHHHHHHhhcccccCCC-ceEE
Q 011390 50 SPKKVAQLLQSTIIDKVKIYDTN-----PEILEAFANTGIDLIVAVENYHVSNISTDTASADEWLSTRVLPFLPA-TSVV 123 (487)
Q Consensus 50 s~~~v~~llk~~~~~~VRiY~~d-----~~vL~A~~~tgi~V~vGv~n~~l~~~a~~~~~a~~wv~~~V~~~~p~-~~I~ 123 (487)
.|.+.++.+...|.+.|= +..+ ..+|+.++..|+++-|.+..+. .. ..+.+|.+. +.|.
T Consensus 68 ~P~~~i~~~~~~g~~~i~-~H~E~~~~~~~~i~~ik~~g~k~GialnP~T------~~--------~~~~~~l~~vD~Vl 132 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYIT-FHAEATEDPKETIKYIKEAGIKAGIALNPET------PV--------EELEPYLDQVDMVL 132 (201)
T ss_dssp SGGGHHHHHHHHT-SEEE-EEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-------G--------GGGTTTGCCSSEEE
T ss_pred cHHHHHHHHHhcCCCEEE-EcccchhCHHHHHHHHHHhCCCEEEEEECCC------Cc--------hHHHHHhhhcCEEE
Confidence 467777777777777663 3322 2788899999999988886431 11 112333332 2333
Q ss_pred EEEecccccccCCCccccCChHHHHHHHHHHHHHHHHCCCCCceE
Q 011390 124 AIVVGNEYLTADGNQMMRMNPKALVQAMQNMHAALLARGLERKIK 168 (487)
Q Consensus 124 ~I~VGNEvl~~~~~~~~~~~~~~ll~am~nv~~aL~~~gl~~~Ik 168 (487)
..+| |+=. +++.. -+..+..|+.+|+.+.+.|++-.|.
T Consensus 133 vMsV--~PG~--~Gq~f---~~~~~~KI~~l~~~~~~~~~~~~I~ 170 (201)
T PF00834_consen 133 VMSV--EPGF--GGQKF---IPEVLEKIRELRKLIPENGLDFEIE 170 (201)
T ss_dssp EESS---TTT--SSB-----HGGHHHHHHHHHHHHHHHTCGSEEE
T ss_pred EEEe--cCCC--Ccccc---cHHHHHHHHHHHHHHHhcCCceEEE
Confidence 3333 3311 23555 6789999999999999988764343
No 69
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=25.94 E-value=1.5e+02 Score=26.46 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=27.6
Q ss_pred HHHHHHHhhCCCCEEEEe--c--------CC---hHHHHHHHhcCCeEE
Q 011390 52 KKVAQLLQSTIIDKVKIY--D--------TN---PEILEAFANTGIDLI 87 (487)
Q Consensus 52 ~~v~~llk~~~~~~VRiY--~--------~d---~~vL~A~~~tgi~V~ 87 (487)
+++.+..+.+|++.|+++ . +. ...|++|+..||+|.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 445666778999988887 3 33 379999999999975
No 70
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=25.87 E-value=2.1e+02 Score=24.68 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=29.2
Q ss_pred ccCccceEEeCCCCCCCCCHHHHHHHHhhCCCCEEEEe
Q 011390 32 QNVAGVGINYGTLGNNLPSPKKVAQLLQSTIIDKVKIY 69 (487)
Q Consensus 32 ~~~~~~GvnYg~~~~nlps~~~v~~llk~~~~~~VRiY 69 (487)
.....+-|.-...+.+.++.++|.+.|++.||..-++-
T Consensus 29 ge~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~ 66 (101)
T PF13721_consen 29 GEDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSIE 66 (101)
T ss_pred CCCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceEE
Confidence 45666778887777788888899999999987665553
No 71
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.06 E-value=1.2e+02 Score=29.72 Aligned_cols=81 Identities=25% Similarity=0.383 Sum_probs=50.0
Q ss_pred CccceEEeCCCCCCCCCHHHHHHHHhhCCCCEEEEecCC-----hHHHHHHHhc--CCeEEEEeccCcccccccChHHHH
Q 011390 34 VAGVGINYGTLGNNLPSPKKVAQLLQSTIIDKVKIYDTN-----PEILEAFANT--GIDLIVAVENYHVSNISTDTASAD 106 (487)
Q Consensus 34 ~~~~GvnYg~~~~nlps~~~v~~llk~~~~~~VRiY~~d-----~~vL~A~~~t--gi~V~vGv~n~~l~~~a~~~~~a~ 106 (487)
-+.+||.|=...-.++. .--+++|||+- ..+.++.... |+=++.-|-|+ .+.....
T Consensus 42 ~sTiGIDFk~kti~l~g-----------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne------~Sfeni~ 104 (207)
T KOG0078|consen 42 ISTIGIDFKIKTIELDG-----------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE------KSFENIR 104 (207)
T ss_pred cceEEEEEEEEEEEeCC-----------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch------HHHHHHH
Confidence 34577777554444443 12367788875 3666666543 44444455443 2455677
Q ss_pred HHHhhcccccCCCceEEEEEecccccc
Q 011390 107 EWLSTRVLPFLPATSVVAIVVGNEYLT 133 (487)
Q Consensus 107 ~wv~~~V~~~~p~~~I~~I~VGNEvl~ 133 (487)
.|++ +|..+.+. .+..|.|||-.=.
T Consensus 105 ~W~~-~I~e~a~~-~v~~~LvGNK~D~ 129 (207)
T KOG0078|consen 105 NWIK-NIDEHASD-DVVKILVGNKCDL 129 (207)
T ss_pred HHHH-HHHhhCCC-CCcEEEeeccccc
Confidence 7885 67777664 6888999997643
No 72
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=24.98 E-value=1.1e+02 Score=31.58 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=40.9
Q ss_pred eeEEEeeccCCCCCCC--CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCcce-EEEEEeecCC-CCCCCCCCCceeeccCC
Q 011390 290 IKITVSESGWPSKGDS--AATPENAKTYNTRLIERAQSNKGTPMRPKENIE-VFVFALFNEN-KKEGGVSERNFGIFNGD 365 (487)
Q Consensus 290 ~~vvVtETGWPS~G~~--~as~~na~~y~~~li~~~~~~~Gtp~rpg~~i~-~yiF~~FDE~-wK~g~~~E~~wGlf~~d 365 (487)
++|.|||--=-..... ....+.++.+++.+++.+.+.. |. .++ +.+..+.|.. |.+... -.+=+||+.|
T Consensus 234 l~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~-----~~-~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~ 306 (320)
T PF00331_consen 234 LPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHP-----PA-AVEGITWWGFTDGYSWRPDTP-PDRPLLFDED 306 (320)
T ss_dssp SEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTT-----HC-TEEEEEESSSBTTGSTTGGHS-EG--SSB-TT
T ss_pred CceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCC-----cc-CCCEEEEECCCCCCcccCCCC-CCCCeeECCC
Confidence 8999999753333221 1335667889999999888742 00 133 3334455533 554311 2234788888
Q ss_pred CCeee
Q 011390 366 GSKVY 370 (487)
Q Consensus 366 ~~~ky 370 (487)
.+||-
T Consensus 307 ~~~Kp 311 (320)
T PF00331_consen 307 YQPKP 311 (320)
T ss_dssp SBB-H
T ss_pred cCCCH
Confidence 88874
No 73
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=24.29 E-value=2.6e+02 Score=33.80 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=55.7
Q ss_pred ceEEeCCCCCC---CCCHHH---HHHHHhhCCCCEEEEecC--ChHHHHHHHhcCCeEEEEeccC--c------cccccc
Q 011390 37 VGINYGTLGNN---LPSPKK---VAQLLQSTIIDKVKIYDT--NPEILEAFANTGIDLIVAVENY--H------VSNIST 100 (487)
Q Consensus 37 ~GvnYg~~~~n---lps~~~---v~~llk~~~~~~VRiY~~--d~~vL~A~~~tgi~V~vGv~n~--~------l~~~a~ 100 (487)
.|+|+-..... ..+++. .++++|+.|++.||+-.- ++..+.++...||-|+.-+..+ . ...+..
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 57876432111 234444 456789999999999642 4688999999999888754211 0 011222
Q ss_pred ChH---HHHHHHhhcccccCCCceEEEEEeccccc
Q 011390 101 DTA---SADEWLSTRVLPFLPATSVVAIVVGNEYL 132 (487)
Q Consensus 101 ~~~---~a~~wv~~~V~~~~p~~~I~~I~VGNEvl 132 (487)
++. ...+-+++.|......-.|..-++|||.-
T Consensus 417 ~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 221 11223444454443223578888999973
No 74
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=23.85 E-value=5.1e+02 Score=27.77 Aligned_cols=59 Identities=12% Similarity=0.243 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHCCCCCceEEecccccccccccCCCCCcccCCCcchhHHHHHHHHHhcCCCccccCCCCCcc
Q 011390 144 PKALVQAMQNMHAALLARGLERKIKVTTPHSMAVLASSFPPSASTFAPDITPTMTSILAFLADTGAPFMVNAYPYFAY 221 (487)
Q Consensus 144 ~~~ll~am~nv~~aL~~~gl~~~IkVtT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~~ 221 (487)
.++++.+++.+|++. . .+.|++.. +- .+| .|..+.+...++|+.+. .+-.+++++|-.+
T Consensus 269 ~~~~~~~i~~l~~~~----~--~i~i~~~~----I~-G~P-------gET~e~~~~t~~fl~~~-~~~~~~~~~~sp~ 327 (430)
T TIGR01125 269 GEQQLDFIERLREKC----P--DAVLRTTF----IV-GFP-------GETEEDFQELLDFVEEG-QFDRLGAFTYSPE 327 (430)
T ss_pred HHHHHHHHHHHHHhC----C--CCeEeEEE----EE-ECC-------CCCHHHHHHHHHHHHhc-CCCEEeeeeccCC
Confidence 677888888887752 1 24444432 21 122 23345588899998764 3555677776655
No 75
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=23.65 E-value=2.6e+02 Score=24.37 Aligned_cols=121 Identities=18% Similarity=0.195 Sum_probs=61.0
Q ss_pred HHHHhhCCCCEEEEecCCh----------HHHHHHHhcCCeEEEEeccCcccccccChHHHHHHHhhcccccCCCceEEE
Q 011390 55 AQLLQSTIIDKVKIYDTNP----------EILEAFANTGIDLIVAVENYHVSNISTDTASADEWLSTRVLPFLPATSVVA 124 (487)
Q Consensus 55 ~~llk~~~~~~VRiY~~d~----------~vL~A~~~tgi~V~vGv~n~~l~~~a~~~~~a~~wv~~~V~~~~p~~~I~~ 124 (487)
++.|.++|.++|-+..... ...+++++.|++...-......... ........|+++. .| ++
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~----~p----da 71 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSE-DAREAQLLWLRRL----RP----DA 71 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHH-HHHHHHHHHHHTC----SS----SE
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcch-hHHHHHHHHHhcC----CC----cE
Confidence 3556678888888876331 3556788899986554332111100 0111223377544 23 37
Q ss_pred EEecccccccCCCccccCChHHHHHHHHHHHHHHHHCCC--CCceEEecccccccccccCCCCCcccCCCcchhHHHHHH
Q 011390 125 IVVGNEYLTADGNQMMRMNPKALVQAMQNMHAALLARGL--ERKIKVTTPHSMAVLASSFPPSASTFAPDITPTMTSILA 202 (487)
Q Consensus 125 I~VGNEvl~~~~~~~~~~~~~~ll~am~nv~~aL~~~gl--~~~IkVtT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~l~ 202 (487)
|+++|+.+.. . +..+|++.|+ .++|.|-+-+........+ |.--++..+..+.-+..++
T Consensus 72 ii~~~~~~a~-----------~-------~~~~l~~~g~~vP~di~vv~~~~~~~~~~~~-p~it~i~~~~~~~g~~a~~ 132 (160)
T PF13377_consen 72 IICSNDRLAL-----------G-------VLRALRELGIRVPQDISVVSFDDSPLLEFFS-PPITTIDQDPREMGREAVE 132 (160)
T ss_dssp EEESSHHHHH-----------H-------HHHHHHHTTSCTTTTSEEEEESSSGHHHCSS-STSEEEEE-HHHHHHHHHH
T ss_pred EEEcCHHHHH-----------H-------HHHHHHHcCCcccccccEEEecCcHHHHHHc-CCCceecCCHHHHHHHHHH
Confidence 7887765432 1 2345666676 4667776655544443333 3445555454443333333
Q ss_pred H
Q 011390 203 F 203 (487)
Q Consensus 203 f 203 (487)
.
T Consensus 133 ~ 133 (160)
T PF13377_consen 133 L 133 (160)
T ss_dssp H
T ss_pred H
Confidence 3
No 76
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=23.64 E-value=2.7e+02 Score=26.98 Aligned_cols=68 Identities=22% Similarity=0.451 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCCCCceeEEEe---eccCCCCCCCCCCHHHHHHHHHHHHHHHHcC-CCCCCCCCCcceEEEEEeecC
Q 011390 272 QIDAVRTAINGLGFGNRSIKITVS---ESGWPSKGDSAATPENAKTYNTRLIERAQSN-KGTPMRPKENIEVFVFALFNE 347 (487)
Q Consensus 272 ~~dav~~a~~k~g~~~~~~~vvVt---ETGWPS~G~~~as~~na~~y~~~li~~~~~~-~Gtp~rpg~~i~~yiF~~FDE 347 (487)
.+|.+..++.+.| +.|+|. .-||...++........+.++..+.+.+... ++.| ....|+++||
T Consensus 63 ~ld~~v~~a~~~g-----i~vild~h~~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~-------~v~~~el~NE 130 (281)
T PF00150_consen 63 RLDRIVDAAQAYG-----IYVILDLHNAPGWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNP-------PVVGWELWNE 130 (281)
T ss_dssp HHHHHHHHHHHTT------EEEEEEEESTTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTT-------TTEEEESSSS
T ss_pred HHHHHHHHHHhCC-----CeEEEEeccCccccccccccccchhhHHHHHhhhhhhccccCCCC-------cEEEEEecCC
Confidence 3444555556655 777776 2368555555445444444444444433321 1211 2446899999
Q ss_pred CCCC
Q 011390 348 NKKE 351 (487)
Q Consensus 348 ~wK~ 351 (487)
+--.
T Consensus 131 P~~~ 134 (281)
T PF00150_consen 131 PNGG 134 (281)
T ss_dssp GCST
T ss_pred cccc
Confidence 8653
No 77
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=22.69 E-value=3.1e+02 Score=30.15 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=34.4
Q ss_pred HHHHHHHHhhCCCCEEEE-------ec------CCh-------HHHHHHHhcCCeEEEEeccCccc
Q 011390 51 PKKVAQLLQSTIIDKVKI-------YD------TNP-------EILEAFANTGIDLIVAVENYHVS 96 (487)
Q Consensus 51 ~~~v~~llk~~~~~~VRi-------Y~------~d~-------~vL~A~~~tgi~V~vGv~n~~l~ 96 (487)
-++.+++|+++|++..|+ +- .+. +++.++.+.||+.+|.+.-.+++
T Consensus 73 y~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P 138 (474)
T PRK09852 73 YKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVP 138 (474)
T ss_pred hHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 367788999988777664 31 132 68889999999999999865555
No 78
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.41 E-value=6.2e+02 Score=24.95 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=49.2
Q ss_pred CCHHHHHHHHhhCCCCEEEEecCCh--------HHHHHHHh-cCCeEEEEeccCcccccccChHHHHHHHhhcccccCCC
Q 011390 49 PSPKKVAQLLQSTIIDKVKIYDTNP--------EILEAFAN-TGIDLIVAVENYHVSNISTDTASADEWLSTRVLPFLPA 119 (487)
Q Consensus 49 ps~~~v~~llk~~~~~~VRiY~~d~--------~vL~A~~~-tgi~V~vGv~n~~l~~~a~~~~~a~~wv~~~V~~~~p~ 119 (487)
..|-++++.+++.|++.+=+.|.|. ++++.++. .-.+|.+|=... +.+.++.|+..
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIr-------s~e~~~~~l~~-------- 94 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIR-------DIEKAKRLLSL-------- 94 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcC-------CHHHHHHHHHC--------
Confidence 3688899999889999999998873 67777765 444788864322 34566677653
Q ss_pred ceEEEEEeccccccc
Q 011390 120 TSVVAIVVGNEYLTA 134 (487)
Q Consensus 120 ~~I~~I~VGNEvl~~ 134 (487)
.+..|+||.|.+.+
T Consensus 95 -Ga~kvvigt~a~~~ 108 (232)
T PRK13586 95 -DVNALVFSTIVFTN 108 (232)
T ss_pred -CCCEEEECchhhCC
Confidence 23457899998864
No 79
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=22.11 E-value=1.9e+02 Score=26.49 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=27.8
Q ss_pred HHHHHHHhhCCCCEEEEe--c--------CC---hHHHHHHHhcCCeEE
Q 011390 52 KKVAQLLQSTIIDKVKIY--D--------TN---PEILEAFANTGIDLI 87 (487)
Q Consensus 52 ~~v~~llk~~~~~~VRiY--~--------~d---~~vL~A~~~tgi~V~ 87 (487)
+++.+.++.+|++.|+++ + +. ..+|++|+..||+|.
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 445667778999998888 3 33 379999999999975
No 80
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=21.69 E-value=5.1e+02 Score=26.76 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=25.4
Q ss_pred HHHHHhhCC-CCEEEEec---------CChHHHHHHHhcCCeEEEEecc
Q 011390 54 VAQLLQSTI-IDKVKIYD---------TNPEILEAFANTGIDLIVAVEN 92 (487)
Q Consensus 54 v~~llk~~~-~~~VRiY~---------~d~~vL~A~~~tgi~V~vGv~n 92 (487)
+++.|++.+ +.+||+.. .+.+.++.++++|..+.|++--
T Consensus 158 ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~ 206 (321)
T TIGR03822 158 IMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHA 206 (321)
T ss_pred HHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecC
Confidence 344444443 66778853 2357788888888888887753
No 81
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.65 E-value=4e+02 Score=28.70 Aligned_cols=59 Identities=10% Similarity=0.234 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHCCCCCceEEecccccccccccCCCCCcccCCCcchhHHHHHHHHHhcCCCccccCCCCCcc
Q 011390 144 PKALVQAMQNMHAALLARGLERKIKVTTPHSMAVLASSFPPSASTFAPDITPTMTSILAFLADTGAPFMVNAYPYFAY 221 (487)
Q Consensus 144 ~~~ll~am~nv~~aL~~~gl~~~IkVtT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~~ 221 (487)
.+++..+++.+|+++ . .+.+++.. +- .+| .|..+.+...++|+.+. .+-.+++++|-..
T Consensus 281 ~~~~~~~i~~lr~~~-----~-~i~i~~d~----Iv-G~P-------gET~ed~~~tl~~i~~l-~~~~~~~~~~sp~ 339 (439)
T PRK14328 281 REYYLELVEKIKSNI-----P-DVAITTDI----IV-GFP-------GETEEDFEETLDLVKEV-RYDSAFTFIYSKR 339 (439)
T ss_pred HHHHHHHHHHHHHhC-----C-CCEEEEEE----EE-ECC-------CCCHHHHHHHHHHHHhc-CCCcccceEecCC
Confidence 677788888777752 2 25454432 22 232 23344588888988754 3445677766543
No 82
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.54 E-value=4.7e+02 Score=28.08 Aligned_cols=58 Identities=10% Similarity=0.284 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHCCCCCceEEecccccccccccCCCCCcccCCCcchhHHHHHHHHHhcCCCccccCCCCCc
Q 011390 144 PKALVQAMQNMHAALLARGLERKIKVTTPHSMAVLASSFPPSASTFAPDITPTMTSILAFLADTGAPFMVNAYPYFA 220 (487)
Q Consensus 144 ~~~ll~am~nv~~aL~~~gl~~~IkVtT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~ 220 (487)
.++.+.+++.+|++. . .+.++|. ++- .|| .|..+.+...++|+.+. .+-.+++|+|-.
T Consensus 264 ~~~~~~~v~~lr~~~-----p-~i~i~~d----~Iv-GfP-------gETeedf~~Tl~fl~~l-~~~~~~~f~~sp 321 (420)
T PRK14339 264 KEWFLNRAEKLRALV-----P-EVSISTD----IIV-GFP-------GESDKDFEDTMDVLEKV-RFEQIFSFKYSP 321 (420)
T ss_pred HHHHHHHHHHHHHHC-----C-CCEEEEE----EEE-ECC-------CCCHHHHHHHHHHHHhc-CCCEEeeEecCC
Confidence 667888888888753 1 2556653 222 233 23345588889988654 333456665433
No 83
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.50 E-value=8.3e+02 Score=25.03 Aligned_cols=70 Identities=10% Similarity=0.084 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHCCCCCceEEecccccccccccCCC--CCccc--CCCcchhHHHHHHHHHhcCCCccccCCCCC
Q 011390 144 PKALVQAMQNMHAALLARGLERKIKVTTPHSMAVLASSFPP--SASTF--APDITPTMTSILAFLADTGAPFMVNAYPYF 219 (487)
Q Consensus 144 ~~~ll~am~nv~~aL~~~gl~~~IkVtT~~~~~vl~~s~pP--S~g~F--~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf 219 (487)
.++++..++++|+. +||+.+-.--.-|.....+ ..|.| .++.-+..+.+++-|.+.+=-++++++|+.
T Consensus 23 ~~~v~~~~~~~~~~--------~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v 94 (317)
T cd06598 23 WQEVDDTIKTLREK--------DFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFV 94 (317)
T ss_pred HHHHHHHHHHHHHh--------CCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcc
Confidence 56677777777653 3555543221112110000 11233 233334478888999998889999999998
Q ss_pred cc
Q 011390 220 AY 221 (487)
Q Consensus 220 ~~ 221 (487)
..
T Consensus 95 ~~ 96 (317)
T cd06598 95 LK 96 (317)
T ss_pred cC
Confidence 64
No 84
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=21.41 E-value=1.6e+02 Score=25.78 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=26.8
Q ss_pred HHHHHHhhCCCCEEEEe--cCC---hHHHHHHHhcCCeEEE
Q 011390 53 KVAQLLQSTIIDKVKIY--DTN---PEILEAFANTGIDLIV 88 (487)
Q Consensus 53 ~v~~llk~~~~~~VRiY--~~d---~~vL~A~~~tgi~V~v 88 (487)
.+.+.++..|++.|+++ +.. ..+|++|+..|++|.-
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34556677899999888 333 3789999999998653
No 85
>CHL00041 rps11 ribosomal protein S11
Probab=21.12 E-value=2.1e+02 Score=25.36 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=27.0
Q ss_pred HHHHHHHhhCCCCEEEEec--CC---hHHHHHHHhcCCeEE
Q 011390 52 KKVAQLLQSTIIDKVKIYD--TN---PEILEAFANTGIDLI 87 (487)
Q Consensus 52 ~~v~~llk~~~~~~VRiY~--~d---~~vL~A~~~tgi~V~ 87 (487)
+++.+.++..|++.|+++= .. ..+|++|+..||+|.
T Consensus 63 ~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 63 ENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 3455666778999998883 32 478999999999865
No 86
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.35 E-value=4.3e+02 Score=28.40 Aligned_cols=59 Identities=7% Similarity=0.199 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHCCCCCceEEecccccccccccCCCCCcccCCCcchhHHHHHHHHHhcCCCccccCCCCCcc
Q 011390 144 PKALVQAMQNMHAALLARGLERKIKVTTPHSMAVLASSFPPSASTFAPDITPTMTSILAFLADTGAPFMVNAYPYFAY 221 (487)
Q Consensus 144 ~~~ll~am~nv~~aL~~~gl~~~IkVtT~~~~~vl~~s~pPS~g~F~~~~~~~~~~~l~fL~~~~d~~~vN~yPyf~~ 221 (487)
..+...+++.+|+.+ . .+.|++.. +- +|| .|..+.+...++|+.+.. +-.+++++|-..
T Consensus 274 ~~~~~~~i~~lr~~~-----~-~i~i~~d~----Iv-GfP-------gET~edf~~tl~fi~~~~-~~~~~~~~~sp~ 332 (434)
T PRK14330 274 REEYLELIEKIRSKV-----P-DASISSDI----IV-GFP-------TETEEDFMETVDLVEKAQ-FERLNLAIYSPR 332 (434)
T ss_pred HHHHHHHHHHHHHhC-----C-CCEEEEEE----EE-ECC-------CCCHHHHHHHHHHHHhcC-CCEEeeeeccCC
Confidence 667777887777752 2 25566543 21 232 233455888899987654 344565555433
Done!