Query 011392
Match_columns 487
No_of_seqs 175 out of 1819
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 00:50:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03074 auxin influx permease 100.0 2.6E-72 5.6E-77 579.7 38.6 472 1-476 1-472 (473)
2 KOG1304 Amino acid transporter 100.0 1.4E-58 3.1E-63 458.4 32.9 385 48-455 45-449 (449)
3 PTZ00206 amino acid transporte 100.0 4.9E-56 1.1E-60 460.8 33.4 386 43-456 53-465 (467)
4 KOG1303 Amino acid transporter 100.0 1.1E-54 2.3E-59 438.7 31.5 388 45-457 33-436 (437)
5 PF01490 Aa_trans: Transmembra 100.0 1.7E-51 3.7E-56 423.6 -2.3 383 48-452 1-408 (409)
6 KOG4303 Vesicular inhibitory a 100.0 3.6E-44 7.8E-49 335.1 4.8 391 47-461 114-520 (524)
7 KOG1305 Amino acid transporter 100.0 2.6E-41 5.7E-46 339.8 24.5 343 49-407 5-375 (411)
8 COG0814 SdaC Amino acid permea 100.0 3E-30 6.5E-35 263.2 30.9 342 48-403 7-379 (415)
9 PRK10483 tryptophan permease; 99.9 4.5E-24 9.8E-29 214.4 31.4 341 48-407 9-373 (414)
10 PF03222 Trp_Tyr_perm: Tryptop 99.9 2.1E-23 4.5E-28 211.6 33.3 344 49-408 2-366 (394)
11 PRK09664 tryptophan permease T 99.9 3.1E-23 6.6E-28 208.2 29.5 337 51-407 10-374 (415)
12 PRK15132 tyrosine transporter 99.9 5E-22 1.1E-26 200.6 31.9 340 51-407 4-362 (403)
13 TIGR00837 araaP aromatic amino 99.9 2.3E-22 5.1E-27 205.0 26.4 335 57-407 4-359 (381)
14 PRK13629 threonine/serine tran 99.8 4.7E-18 1E-22 171.0 33.7 364 50-444 21-435 (443)
15 TIGR00814 stp serine transport 99.8 5.9E-16 1.3E-20 157.0 31.3 340 56-407 9-379 (397)
16 TIGR00912 2A0309 spore germina 99.6 3.4E-12 7.3E-17 129.2 28.7 338 49-408 2-355 (359)
17 PRK10249 phenylalanine transpo 99.5 2.1E-10 4.6E-15 119.8 38.2 228 49-290 22-263 (458)
18 TIGR01773 GABAperm gamma-amino 99.4 9.3E-10 2E-14 114.9 37.2 229 48-290 12-255 (452)
19 TIGR00909 2A0306 amino acid tr 99.4 6.4E-10 1.4E-14 115.4 35.7 233 48-293 3-252 (429)
20 PRK15049 L-asparagine permease 99.4 2E-09 4.3E-14 113.5 37.1 344 48-407 28-406 (499)
21 PRK10655 potE putrescine trans 99.4 1.9E-09 4.1E-14 112.1 36.3 232 48-292 6-245 (438)
22 PRK10746 putative transport pr 99.4 2.8E-09 6.1E-14 111.4 37.4 347 48-408 10-389 (461)
23 PRK10238 aromatic amino acid t 99.4 3.8E-09 8.2E-14 110.3 36.9 226 48-287 12-251 (456)
24 PRK11387 S-methylmethionine tr 99.4 3.7E-09 8E-14 111.0 36.8 233 48-293 14-263 (471)
25 PRK10644 arginine:agmatin anti 99.4 3.6E-09 7.8E-14 110.3 35.6 233 48-293 8-248 (445)
26 PRK11049 D-alanine/D-serine/gl 99.4 9.3E-09 2E-13 107.8 38.2 230 48-291 20-266 (469)
27 TIGR00905 2A0302 transporter, 99.3 9.2E-09 2E-13 108.0 36.9 234 48-293 7-255 (473)
28 PRK10580 proY putative proline 99.3 3E-08 6.4E-13 103.8 39.9 229 48-290 9-253 (457)
29 PRK11021 putative transporter; 99.3 1.7E-08 3.7E-13 104.1 36.9 223 51-290 2-231 (410)
30 TIGR00913 2A0310 amino acid pe 99.3 1.4E-08 3E-13 106.9 36.2 229 49-290 3-251 (478)
31 PRK10836 lysine transporter; P 99.3 4.1E-08 9E-13 103.5 39.2 236 48-295 15-264 (489)
32 PRK10435 cadB lysine/cadaverin 99.3 4.5E-09 9.7E-14 109.2 31.4 234 48-295 5-246 (435)
33 TIGR03810 arg_ornith_anti argi 99.3 1.5E-08 3.3E-13 106.2 35.7 345 49-408 2-381 (468)
34 PF03845 Spore_permease: Spore 99.3 3.4E-09 7.3E-14 105.5 27.6 285 50-349 2-296 (320)
35 PRK10197 gamma-aminobutyrate t 99.3 4.2E-08 9.1E-13 102.2 36.1 332 60-407 4-368 (446)
36 COG1113 AnsP Gamma-aminobutyra 99.2 1.4E-08 3E-13 101.6 27.2 337 50-406 15-388 (462)
37 TIGR00930 2a30 K-Cl cotranspor 99.2 2.8E-08 6E-13 111.3 32.8 225 50-290 78-334 (953)
38 TIGR00906 2A0303 cationic amin 99.2 2.4E-08 5.1E-13 106.6 30.7 343 48-408 28-412 (557)
39 TIGR00908 2A0305 ethanolamine 99.2 2.2E-07 4.7E-12 96.9 34.9 228 49-289 8-244 (442)
40 PF13520 AA_permease_2: Amino 99.2 5.9E-08 1.3E-12 100.6 30.2 233 51-298 2-248 (426)
41 KOG1287 Amino acid transporter 99.1 1.2E-08 2.6E-13 103.6 20.9 346 49-409 13-388 (479)
42 TIGR00911 2A0308 L-type amino 99.1 2.9E-07 6.3E-12 97.5 31.2 237 46-295 40-294 (501)
43 COG0833 LysP Amino acid transp 99.0 1.3E-06 2.9E-11 89.4 30.9 223 50-286 46-284 (541)
44 TIGR03428 ureacarb_perm permea 99.0 1.3E-05 2.8E-10 84.4 38.7 59 238-296 214-273 (475)
45 PRK11357 frlA putative fructos 98.9 1.4E-06 3E-11 90.9 30.2 231 48-291 8-250 (445)
46 COG0531 PotE Amino acid transp 98.9 1.5E-05 3.3E-10 83.4 34.4 235 50-297 14-262 (466)
47 PRK15238 inner membrane transp 98.8 6.4E-05 1.4E-09 79.5 36.9 53 238-290 212-265 (496)
48 KOG3832 Predicted amino acid t 98.8 6.7E-08 1.5E-12 85.7 11.3 105 55-159 17-165 (319)
49 TIGR00907 2A0304 amino acid pe 98.6 0.00023 5.1E-09 75.0 34.5 50 238-287 218-268 (482)
50 PRK11375 allantoin permease; P 98.6 4.2E-05 9E-10 80.3 28.5 265 125-395 90-391 (484)
51 TIGR00910 2A0307_GadC glutamat 98.6 0.00011 2.4E-09 77.8 32.0 50 240-289 197-247 (507)
52 COG1457 CodB Purine-cytosine p 98.6 0.00016 3.4E-09 73.7 30.6 258 129-396 86-351 (442)
53 TIGR03813 put_Glu_GABA_T putat 98.6 0.00044 9.5E-09 72.8 34.7 53 245-297 202-255 (474)
54 KOG1286 Amino acid transporter 98.5 1.8E-05 3.9E-10 83.5 21.4 333 58-407 40-423 (554)
55 TIGR00800 ncs1 NCS1 nucleoside 98.5 0.00025 5.4E-09 73.9 29.2 269 125-395 77-377 (442)
56 PF00324 AA_permease: Amino ac 98.4 3.7E-06 7.9E-11 88.6 14.6 226 60-299 7-263 (478)
57 KOG1289 Amino acid transporter 98.2 0.0042 9.1E-08 64.1 29.4 63 237-299 252-315 (550)
58 TIGR02358 thia_cytX probable h 98.1 0.0047 1E-07 63.1 29.0 256 125-394 59-321 (386)
59 COG3949 Uncharacterized membra 98.0 0.0072 1.6E-07 58.6 25.4 129 55-200 8-141 (349)
60 COG0591 PutP Na+/proline sympo 97.8 0.062 1.3E-06 56.7 34.6 143 51-204 41-185 (493)
61 PRK11017 codB cytosine permeas 97.8 0.013 2.8E-07 60.3 26.0 171 125-297 72-244 (404)
62 TIGR00796 livcs branched-chain 97.7 0.085 1.9E-06 53.4 28.7 307 58-405 3-348 (378)
63 PF00474 SSF: Sodium:solute sy 97.6 0.049 1.1E-06 56.1 26.3 143 49-206 7-152 (406)
64 TIGR00813 sss transporter, SSS 97.3 0.24 5.3E-06 51.0 31.2 143 50-207 5-149 (407)
65 COG1953 FUI1 Cytosine/uracil/t 97.3 0.13 2.9E-06 53.0 24.7 246 188-436 184-446 (497)
66 TIGR02119 panF sodium/pantothe 97.2 0.36 7.7E-06 50.8 37.1 150 48-208 40-191 (471)
67 PF02133 Transp_cyt_pur: Perme 96.9 0.01 2.2E-07 61.8 12.4 169 125-294 72-259 (440)
68 TIGR02121 Na_Pro_sym sodium/pr 96.6 1.3 2.7E-05 46.9 37.4 146 50-206 38-188 (487)
69 PRK09442 panF sodium/panthothe 96.5 1.5 3.2E-05 46.3 38.3 147 50-207 43-191 (483)
70 TIGR00835 agcS amino acid carr 96.4 1.5 3.2E-05 45.2 32.0 151 50-208 47-199 (425)
71 PRK12488 acetate permease; Pro 96.3 1.9 4.2E-05 46.2 36.4 146 47-208 66-214 (549)
72 PF02554 CstA: Carbon starvati 96.3 0.4 8.7E-06 47.7 18.0 103 50-164 52-154 (376)
73 PRK15419 proline:sodium sympor 96.3 1.9 4.2E-05 45.7 36.8 150 47-207 39-193 (502)
74 PF05525 Branch_AA_trans: Bran 96.1 2 4.4E-05 44.2 26.2 317 52-405 5-354 (427)
75 TIGR02711 symport_actP cation/ 95.5 4.4 9.6E-05 43.5 35.3 140 50-205 69-211 (549)
76 PF01566 Nramp: Natural resist 95.4 3.5 7.5E-05 41.6 27.5 76 125-201 43-120 (358)
77 PRK15015 carbon starvation pro 95.2 0.81 1.8E-05 48.8 15.8 92 55-158 88-179 (701)
78 PRK09395 actP acetate permease 94.2 9.4 0.0002 41.0 36.7 141 50-205 71-213 (551)
79 TIGR03648 Na_symport_lg probab 94.2 9.6 0.00021 41.0 36.1 143 47-204 31-175 (552)
80 PF01235 Na_Ala_symp: Sodium:a 93.9 8.6 0.00019 39.5 24.1 65 46-111 15-80 (416)
81 COG1966 CstA Carbon starvation 93.0 3 6.4E-05 43.7 14.4 94 51-157 53-147 (575)
82 PRK00701 manganese transport p 92.8 14 0.00029 38.5 36.3 35 125-159 95-129 (439)
83 COG1914 MntH Mn2+ and Fe2+ tra 92.6 14 0.0003 38.0 32.6 67 340-407 312-378 (416)
84 PRK10484 putative transporter; 90.1 29 0.00063 37.0 34.6 82 49-145 39-122 (523)
85 KOG2083 Na+/K+ symporter [Inor 89.9 1.5 3.3E-05 46.1 8.7 51 45-98 30-80 (643)
86 TIGR01197 nramp NRAMP (natural 87.2 38 0.00082 34.6 30.9 61 338-403 318-380 (390)
87 COG4147 DhlC Predicted symport 86.6 43 0.00094 34.8 29.0 166 125-294 105-294 (529)
88 KOG2082 K+/Cl- cotransporter K 86.4 56 0.0012 35.9 24.4 43 59-101 124-167 (1075)
89 PLN00151 potassium transporter 85.7 65 0.0014 35.9 20.0 18 81-98 140-157 (852)
90 TIGR00796 livcs branched-chain 84.0 27 0.00059 35.5 13.8 66 125-190 256-321 (378)
91 KOG1288 Amino acid transporter 84.0 70 0.0015 34.9 17.9 33 259-291 316-349 (945)
92 COG0733 Na+-dependent transpor 83.7 57 0.0012 33.7 28.3 74 197-272 167-250 (439)
93 COG1115 AlsT Na+/alanine sympo 82.2 38 0.00083 34.9 13.8 154 46-208 59-216 (452)
94 PRK15433 branched-chain amino 72.7 1.2E+02 0.0027 31.4 26.3 43 51-93 9-54 (439)
95 PF05525 Branch_AA_trans: Bran 68.8 19 0.00041 37.2 7.7 66 126-191 263-328 (427)
96 COG0814 SdaC Amino acid permea 65.0 1.7E+02 0.0038 30.1 20.4 139 267-408 220-377 (415)
97 COG1114 BrnQ Branched-chain am 56.5 2.4E+02 0.0052 29.0 27.5 43 51-93 6-51 (431)
98 COG0534 NorM Na+-driven multid 54.2 2E+02 0.0043 30.0 12.5 132 264-408 311-443 (455)
99 PF00209 SNF: Sodium:neurotran 52.3 3.2E+02 0.0069 29.1 30.9 34 239-272 251-285 (523)
100 COG0534 NorM Na+-driven multid 47.6 3.5E+02 0.0076 28.2 14.0 135 263-408 86-221 (455)
101 KOG1277 Endosomal membrane pro 45.3 1.5E+02 0.0032 30.7 9.1 44 59-109 294-337 (593)
102 COG1114 BrnQ Branched-chain am 44.9 3.4E+02 0.0074 27.9 11.6 65 126-190 265-329 (431)
103 PRK15433 branched-chain amino 41.1 96 0.0021 32.2 7.4 65 126-191 267-331 (439)
104 PF03977 OAD_beta: Na+-transpo 40.6 90 0.0019 30.9 6.6 88 237-325 145-253 (360)
105 KOG1291 Mn2+ and Fe2+ transpor 40.2 4.6E+02 0.01 27.4 20.5 58 350-407 353-412 (503)
106 KOG0569 Permease of the major 38.5 5E+02 0.011 27.4 12.8 20 245-264 413-432 (485)
107 KOG1289 Amino acid transporter 37.6 4.6E+02 0.01 28.0 11.7 41 125-165 326-366 (550)
108 PRK13183 psbN photosystem II r 35.8 31 0.00067 23.3 1.9 28 272-299 7-34 (46)
109 PHA02680 ORF090 IMV phosphoryl 34.2 1.4E+02 0.0031 23.2 5.5 56 242-299 16-73 (91)
110 PF02468 PsbN: Photosystem II 32.0 38 0.00081 22.6 1.8 26 274-299 6-31 (43)
111 KOG2466 Uridine permease/thiam 30.1 6.8E+02 0.015 26.5 13.2 131 179-310 191-332 (572)
112 CHL00020 psbN photosystem II p 30.0 32 0.00069 22.9 1.2 27 273-299 5-31 (43)
113 PRK01766 multidrug efflux prot 28.2 5.6E+02 0.012 26.3 11.0 27 381-407 415-441 (456)
114 PF02990 EMP70: Endomembrane p 28.0 3.8E+02 0.0082 28.6 9.7 11 59-69 263-273 (521)
115 COG3763 Uncharacterized protei 27.8 1.5E+02 0.0033 22.0 4.5 30 432-461 6-35 (71)
116 PRK01844 hypothetical protein; 26.7 1.5E+02 0.0034 22.2 4.4 29 433-461 7-35 (72)
117 TIGR01109 Na_pump_decarbB sodi 25.7 1.2E+02 0.0026 29.9 4.8 74 237-311 145-236 (354)
118 PRK00665 petG cytochrome b6-f 24.6 1.4E+02 0.003 19.1 3.2 16 78-93 7-22 (37)
119 PRK15475 oxaloacetate decarbox 24.4 1.2E+02 0.0027 30.4 4.7 74 237-311 216-307 (433)
120 PHA03048 IMV membrane protein; 23.7 2.5E+02 0.0054 22.0 5.2 56 241-299 15-71 (93)
121 PRK15476 oxaloacetate decarbox 23.2 1.4E+02 0.0029 30.1 4.7 74 237-311 216-307 (433)
122 PRK15477 oxaloacetate decarbox 23.2 1.4E+02 0.003 30.1 4.7 74 237-311 216-307 (433)
123 CHL00008 petG cytochrome b6/f 22.1 1.7E+02 0.0037 18.7 3.3 16 78-93 7-22 (37)
124 PF08006 DUF1700: Protein of u 22.0 1.8E+02 0.0039 26.0 5.1 16 59-74 81-96 (181)
125 PF12794 MscS_TM: Mechanosensi 22.0 8E+02 0.017 24.5 13.6 30 270-299 47-76 (340)
126 COG5264 VTC1 Vacuolar transpor 21.8 4.8E+02 0.01 21.8 8.7 49 59-111 43-92 (126)
127 PF13210 DUF4018: Domain of un 21.1 5.7E+02 0.012 22.5 9.8 61 348-408 91-151 (192)
128 KOG2290 Rhomboid family protei 20.9 6E+02 0.013 26.4 8.7 29 372-400 559-587 (652)
129 KOG4812 Golgi-associated prote 20.7 1.1E+02 0.0023 28.8 3.2 85 361-460 160-255 (262)
No 1
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=2.6e-72 Score=579.73 Aligned_cols=472 Identities=86% Similarity=1.464 Sum_probs=420.1
Q ss_pred CCchhhhhHHHhhcccccccCCCCCCCCCcchhhhhhhcccccceeecCccHHHHHHHHHHhHhhhhhcchHHHHHhhch
Q 011392 1 MLPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGM 80 (487)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~ 80 (487)
|..+++.++...++.+|.|++..++.++++ ..+...++|+..|+++|.++|++|+++..+|.|+|+||+||+++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~ 76 (473)
T PLN03074 1 MMAGKQAETAIVGNYVEMEVEGGGEKEEGG----GGGGKSRLKSLLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGM 76 (473)
T ss_pred CCCccccchhHhhccchhccccccccccCC----CCCCceeeeecccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccH
Confidence 567788888888888777765333333322 2467788999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHH
Q 011392 81 LSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIA 160 (487)
Q Consensus 81 ~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~ 160 (487)
++|++.++++++++.||++++.+++.++++|++.++.+|++++.+|.|+++..+||+|+.+..+++++++++.++.|++.
T Consensus 77 v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~ 156 (473)
T PLN03074 77 LSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIA 156 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999988988887767778887777899999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Q 011392 161 CASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYF 240 (487)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~ 240 (487)
+++++.++++..+.+.|++++.++.+|++++|++++++++|.+|+.++++.++++++.++.++..++.++..+.++..++
T Consensus 157 ~~~~~~~l~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f 236 (473)
T PLN03074 157 CASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYF 236 (473)
T ss_pred HhhhhhhhCCCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHH
Confidence 99888888888899999999999999999999999999999999998777666666667666666655554456777888
Q ss_pred HHHHHHHHHhccccchHHHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCchHHHHHHH
Q 011392 241 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVI 320 (487)
Q Consensus 241 ~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~i~~~ 320 (487)
.++++++|||++|.++|+++++||+|+||+++...++.+++++|+.+|+.||+.|||++.+++++++|+|++.+.+++++
T Consensus 237 ~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~ 316 (473)
T PLN03074 237 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVI 316 (473)
T ss_pred HHHHHHHHHhcccccHHHHHHhccChhcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999998545678888987767889999
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHccCCCcchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHH
Q 011392 321 LMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLA 400 (487)
Q Consensus 321 ~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~ 400 (487)
++.++++.+|++++.|+.+.+|+..+.+.++....|+.+|+.++++++++|+.+|+|+++++++||+++++++|++|+++
T Consensus 317 ~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~ 396 (473)
T PLN03074 317 LMLIHQFITFGFACTPLYFVWEKAIGVHDTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLA 396 (473)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887665566778999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHhhhhhccCCCCCcccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCCCCC
Q 011392 401 HMLTYRKASARQNAAEKPPFFLPSWTAMYAFNIFVVVWVFVVGFGFGGWASVTNFVRQVDSFGLFAKCYQCKPPPP 476 (487)
Q Consensus 401 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~Gt~~ai~~ii~~~~~~~~~~~~~~c~~~~~ 476 (487)
|++.++++.+|++..++|++..++|++..++|++++++++++|++.|+|+|+++|+++++++++|++||||.++++
T Consensus 397 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~~~~~c~~~~~ 472 (473)
T PLN03074 397 HMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAKCYQCPPPSP 472 (473)
T ss_pred HHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhhhhccCCCCCC
Confidence 9999888777777788888766677778899999998888998889999999999999999999999999987765
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-58 Score=458.42 Aligned_cols=385 Identities=21% Similarity=0.238 Sum_probs=330.8
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (487)
+..|..+|..|++|.++|+|+|++|+||+++||+.|.+..+++++++.||+|.+.+|.++.+++...+.. +|+
T Consensus 45 ~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~-------~y~ 117 (449)
T KOG1304|consen 45 HPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSL-------DYA 117 (449)
T ss_pred CCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccc-------cHH
Confidence 4689999999999999999999999999999999999999999999999999999998888777643332 455
Q ss_pred HHHH----------hhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----ccccchhHHHHHHHHHhhhhccC
Q 011392 128 EVLD----------GLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN-----DRLDKRTWTYIFGACCATTVFIP 192 (487)
Q Consensus 128 ~l~~----------~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~-----~~~~~~~~~ii~~~i~~pl~~l~ 192 (487)
+.++ +.+|+++|.++..+.+++++|.|++|++..++++..+. ...+.+.|+.+..+..++++++|
T Consensus 118 ~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir 197 (449)
T KOG1304|consen 118 ETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIR 197 (449)
T ss_pred HHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 5544 45788888899999999999999999999999986643 35677889999999999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHHHHHHhccccchHHHHhhccCccchh--
Q 011392 193 SFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK-- 270 (487)
Q Consensus 193 ~l~~l~~~s~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~-- 270 (487)
+++.|+.+|.++.+.++....++.+..+. ..++..+.+...++.++...+|+.+|||+|++++.|++++||+|++|.
T Consensus 198 ~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~-~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~ 276 (449)
T KOG1304|consen 198 NLKILSPFSLFANVFILVGLAIIMYYLVQ-DLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGP 276 (449)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHh-ccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCc
Confidence 99999999999999876544444443333 222222222334566777889999999999999999999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHcc--
Q 011392 271 -YIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGM-- 347 (487)
Q Consensus 271 -~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~-- 347 (487)
+++..++.++.++|+.+|++||++||+++ ++.|+.|+|++.+.+.+++++++.++++||+|++|..+++++.+.+
T Consensus 277 ~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v--~~sITLNLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~ 354 (449)
T KOG1304|consen 277 FGVLNLGMGIVTLLYIFLGFFGYLAFGDDV--KGSITLNLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKF 354 (449)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhccccc--cceEEecCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhc
Confidence 99999999999999999999999999999 4589999999777899999999999999999999999999987642
Q ss_pred CCCcchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHHHHHHhhhHhhhhhccCCCCCcccchhh
Q 011392 348 HDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKASARQNAAEKPPFFLPSWTA 427 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (487)
++.+.++..+.+|..++++++.+|..+||++.+++++||++++.+.+++|+++++..++++.++ +++|
T Consensus 355 ~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~------------~~~~ 422 (449)
T KOG1304|consen 355 SENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKG------------RFMW 422 (449)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccC------------ceeh
Confidence 2334567788899999999999999999999999999999999999999999999999887531 3456
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 011392 428 MYAFNIFVVVWVFVVGFGFGGWASVTNF 455 (487)
Q Consensus 428 ~~~~~~~~i~~~~~~~~v~Gt~~ai~~i 455 (487)
+.++|.+++++ |+++++.|||+++++|
T Consensus 423 ~~~~ni~l~~~-G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 423 KLIKNIVLIVF-GVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhhhhcC
Confidence 78999888885 7888999999999874
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=4.9e-56 Score=460.80 Aligned_cols=386 Identities=14% Similarity=0.158 Sum_probs=311.1
Q ss_pred cceeecCccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 011392 43 KSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNH 122 (487)
Q Consensus 43 ~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~ 122 (487)
.....++++..++.+|++|+++|+|+|+||+||+++||++|++++++++.++.|+.+++.++..+ . +
T Consensus 53 ~~~~~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~----~---------~ 119 (467)
T PTZ00206 53 MATIIPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK----T---------N 119 (467)
T ss_pred HhhccCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc----C---------C
Confidence 33446788999999999999999999999999999999999999999999999999998776321 1 1
Q ss_pred ccCHHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc----------c-cchhHHHHHHHHHhhhhcc
Q 011392 123 VIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDR----------L-DKRTWTYIFGACCATTVFI 191 (487)
Q Consensus 123 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~----------~-~~~~~~ii~~~i~~pl~~l 191 (487)
..+|+|++++++||++++++.++..++++|.+++|++..+|.+...... . ++..+.+++.++++|++++
T Consensus 120 ~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~ 199 (467)
T PTZ00206 120 IRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIP 199 (467)
T ss_pred CCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccc
Confidence 1279999999999999999999999999999999999999877532211 1 1223445667788999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC---CC--C-----cc-cHHHHHHHHHHHHHHhccccchHHHH
Q 011392 192 PSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGAS---HT--A-----PT-KLVLYFTGATNILYTFGGHAVTVEIM 260 (487)
Q Consensus 192 ~~l~~l~~~s~~~~~~~~~~~~~~~~~~i~~g~~~~~~---~~--~-----~~-~~~~~~~~~~~~~faf~~~~~i~~i~ 260 (487)
|++++|+++|.+++.++++.++.+++.+..++.+++.+ .. + .. ...+.+.++|+++|||.||.++|+++
T Consensus 200 r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~ 279 (467)
T PTZ00206 200 RHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVY 279 (467)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHH
Confidence 99999999999999887766655555555544332211 10 0 01 12357889999999999999999999
Q ss_pred hhccCc--cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCC-C-chHHHHHHHHHHHHHHHHHHhhhcc
Q 011392 261 HAMWKP--QKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLP-K-NRWRDAAVILMLIHQFITFGFACTP 336 (487)
Q Consensus 261 ~~m~~p--~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~~~-~-~~~~~i~~~~~~i~~~~s~pl~~~p 336 (487)
+|||+| +|+.+++..++.+++++|..+|++||+.||+++ +++++.|++ . +....+++++..+.++.+||++.+|
T Consensus 280 ~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v--~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p 357 (467)
T PTZ00206 280 MDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNV--TGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMA 357 (467)
T ss_pred HhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc--chHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhh
Confidence 999984 788899999999999999999999999999999 669999994 3 4556788999999999999999999
Q ss_pred HHHHHHHHHcc-CCCcchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHHHHHHhhhHhhhhhcc
Q 011392 337 LYFVWEKVIGM-HDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKASARQNAA 415 (487)
Q Consensus 337 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~~l~~~~~~~~~~~~~ 415 (487)
+|+.+++.+.. +++.+.+++...+..+++.+.++|+.+|+++.+++++||++++.++|++|+++|++....+.++.
T Consensus 358 ~r~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~--- 434 (467)
T PTZ00206 358 CRNALYDVIGWDARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKV--- 434 (467)
T ss_pred HHHHHHHHhCCCcccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhh---
Confidence 99999998742 23334556666666777788999999999999999999999999999999999998422211110
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 011392 416 EKPPFFLPSWTAMYAFNIFVVVWVFVVGFGFGGWASVTNFV 456 (487)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~Gt~~ai~~ii 456 (487)
.| ++++.+++++++ |+++++.|||+++++.+
T Consensus 435 --------~~-~~~~~~~~lli~-Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 435 --------GP-FYYISTYVVLIT-GVIAIVFGTGATIWGVT 465 (467)
T ss_pred --------ch-HHHHHHHHHHHH-HhheEEecchhHhhHHh
Confidence 12 234778888885 67778899999999876
No 4
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-54 Score=438.66 Aligned_cols=388 Identities=29% Similarity=0.429 Sum_probs=327.3
Q ss_pred eeecCccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011392 45 FLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVI 124 (487)
Q Consensus 45 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 124 (487)
..+++.|.++|.+|.++.++|.|+|+||||++++||+.|++++++.++++.||.++|.+|+..++.+.++ +.+
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~---r~~---- 105 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGK---RRY---- 105 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc---cCC----
Confidence 4456688999999999999999999999999999999999999999999999999999998777655532 222
Q ss_pred CHHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhc------cc-cccchhHHHHHHHHHhhhhccCCCcch
Q 011392 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYI------ND-RLDKRTWTYIFGACCATTVFIPSFHNY 197 (487)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~------~~-~~~~~~~~ii~~~i~~pl~~l~~l~~l 197 (487)
+|.|+++++||+++++++..++.+.++++++.|++..++++..+ +. ..+.+.|+++++.+.+|++++||++++
T Consensus 106 ~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l 185 (437)
T KOG1303|consen 106 RYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSL 185 (437)
T ss_pred ChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchh
Confidence 59999999999999989999999999999999999999998643 22 345678999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---CCCCCcccHHHHHHHHHHHHHHhccccchHHHHhhccCccchhHHHH
Q 011392 198 RIWSFLGLGMTTYTAWYLTIAAVVHGQVEG---ASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL 274 (487)
Q Consensus 198 ~~~s~~~~~~~~~~~~~~~~~~i~~g~~~~---~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~ 274 (487)
+++|..+.+..+.++.+.+..++.+|.... .++....+....++++|+++|+|++|.++|+||++||+|++++|++.
T Consensus 186 ~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~l 265 (437)
T KOG1303|consen 186 SYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALL 265 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHH
Confidence 999999999888888788888877764331 12211111111289999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccCCC-CchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHccCCC---
Q 011392 275 FATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLP-KNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDT--- 350 (487)
Q Consensus 275 ~a~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~~~-~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~--- 350 (487)
.++.+++++|+.+++.||++|||++ +++++.|++ +.++...+++++.++++.+|+++..|+.+.+|+..+.+.+
T Consensus 266 is~~~~~~~y~~vai~GY~aFG~~~--~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~ 343 (437)
T KOG1303|consen 266 ISYIIVTFLYFPVAIIGYWAFGDSV--PDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFK 343 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccc--chhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcccc
Confidence 9999999999999999999999999 459999996 4566789999999999999999999999999999975443
Q ss_pred -cchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHHHHHHhhhHhhhhhccCCCCCcccchhhHH
Q 011392 351 -KSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKASARQNAAEKPPFFLPSWTAMY 429 (487)
Q Consensus 351 -~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (487)
+....|.+.|+.+++.+.++|+.+|.|+++++++||+...++++++|+++|++.++.+ +++.+|
T Consensus 344 ~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~-----------~~s~~~---- 408 (437)
T KOG1303|consen 344 KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPK-----------RFSPKW---- 408 (437)
T ss_pred ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------hhhHHH----
Confidence 3566899999999999999999999999999999999999999999999999985443 333444
Q ss_pred HHHHHH-HHHHHHHHHhhhHHHHHHHHHH
Q 011392 430 AFNIFV-VVWVFVVGFGFGGWASVTNFVR 457 (487)
Q Consensus 430 ~~~~~~-i~~~~~~~~v~Gt~~ai~~ii~ 457 (487)
+++|.+ +++ ++++.+.....++++++.
T Consensus 409 ~~~~~~~~~~-~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 409 LLNWVIILVV-GLLLSVLAAVGGVRSLII 436 (437)
T ss_pred HHHHHhhhhh-hhhHHHHHHHHHHHHHhh
Confidence 345555 443 333344777777776654
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.7e-51 Score=423.58 Aligned_cols=383 Identities=24% Similarity=0.371 Sum_probs=317.8
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (487)
|++|.+++++|++|+++|+|+|+||++|+++||++|++++++++.++.|+.+++.++..+.++++ +..+|+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~---------~~~~y~ 71 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGT---------GRRSYG 71 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccccc---------cccccc
Confidence 57899999999999999999999999999999999999999999999999999988754433111 112799
Q ss_pred HHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccc------cccchhHHHHHHHHHhhhhccCCCcchhHHH
Q 011392 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND------RLDKRTWTYIFGACCATTVFIPSFHNYRIWS 201 (487)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~------~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s 201 (487)
|++++.+||++++++.++..++++|.++.|++..++.+..+.+ ..+++.|.++..++++|++++|+++++++.|
T Consensus 72 ~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s 151 (409)
T PF01490_consen 72 DLARRAFGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLS 151 (409)
T ss_pred ccccccccccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHh
Confidence 9999999999999999999999999999999999988765432 3466678888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh--cCCCCCCCC---CCcccHHHHHHHHHHHHHHhccccchHHHHhhccCccchh---HHH
Q 011392 202 FLGLGMTTYTAWYLTIAAVV--HGQVEGASH---TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK---YIY 273 (487)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~i~--~g~~~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~---~~~ 273 (487)
.++.+++++.....++.... .++..+.+. .+..++.+++.++|+++|||.||.++|++++|||+|++++ ++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~ 231 (409)
T PF01490_consen 152 ILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVL 231 (409)
T ss_pred hhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceee
Confidence 99988876532122222211 122222222 2235667899999999999999999999999999998877 889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCch-HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHcc-----
Q 011392 274 LFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNR-WRDAAVILMLIHQFITFGFACTPLYFVWEKVIGM----- 347 (487)
Q Consensus 274 ~~a~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~~~~~~-~~~i~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~----- 347 (487)
..++.+++++|..+|+.||++||+++ ++|++.|+++++ +..++++++.++++.+||++.+|.++.+++.+..
T Consensus 232 ~~s~~~~~~~y~~~g~~gy~~fg~~~--~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~ 309 (409)
T PF01490_consen 232 SISMIICFIIYLLFGIFGYLAFGDSV--QGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASS 309 (409)
T ss_pred eehhhhhhHHhhhhhhcccceeeeee--cchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheecccccc
Confidence 99999999999999999999999999 569999999875 6789999999999999999999999999998853
Q ss_pred -----CCCcchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHHHHHHhhhHhhhhhccCCCCCcc
Q 011392 348 -----HDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKASARQNAAEKPPFFL 422 (487)
Q Consensus 348 -----~~~~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~ 422 (487)
+++.++++|+.+|+.++++++++|..+|+++++++++|+++++.++|++|+++|++.+++++.+.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~--------- 380 (409)
T PF01490_consen 310 RDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFG--------- 380 (409)
T ss_pred ccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccc---------
Confidence 234556789999999999999999999999999999999999999999999999999877642210
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhhHHHHH
Q 011392 423 PSWTAMYAFNIFVVVWVFVVGFGFGGWASV 452 (487)
Q Consensus 423 ~~~~~~~~~~~~~i~~~~~~~~v~Gt~~ai 452 (487)
+|.....+++.++++ |+++++.|+|+++
T Consensus 381 -~~~~~~~~~~~~~~~-g~~~~~~~~~~~i 408 (409)
T PF01490_consen 381 -WWWILSILNWIIIVF-GVVLMVFGTYQSI 408 (409)
T ss_pred -eeehhhccceEEEEE-eeehhHHhHHHHc
Confidence 111123456777764 5666779999876
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-44 Score=335.05 Aligned_cols=391 Identities=14% Similarity=0.173 Sum_probs=327.7
Q ss_pred ecCccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCH
Q 011392 47 WHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (487)
Q Consensus 47 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (487)
..+.+.|||..|.+|.+-|.=+++||+|....||. ++..++.++.++.|++.+|.+|.-+-.+ ..+-.+.+| +|
T Consensus 114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~--dGevVrvRd---sY 187 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGE--DGEVVRVRD---SY 187 (524)
T ss_pred CCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCC--CCcEEEeeh---hH
Confidence 34588999999999999999999999999999997 9999999999999999998887533222 112345666 89
Q ss_pred HHHHHhhhCcc-hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--ccccchhHHHHHHHHHhhhhccCCCcchhHHHHH
Q 011392 127 FEVLDGLLGPY-WKAVGLAFNCTFLLFGSVIQLIACASNIYYIN--DRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 203 (487)
Q Consensus 127 ~~l~~~~~G~~-~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~--~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~ 203 (487)
.+++..+++++ |.+.+.+.+.+.++..|+.|++.+++.++.-. ...+.+-|+++..+.++|.+++++++-.+.+|++
T Consensus 188 vaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ 267 (524)
T KOG4303|consen 188 VAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASLLPCSFLKDLKIVSRLSFF 267 (524)
T ss_pred HHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHHhhhHHHHHHHHHHHHHHH
Confidence 99999998887 44788899999999999999999999886533 3778999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHHHHHHHHhccccchHHHHhhccCccchhHHHHHHHHHHHH
Q 011392 204 GLGMTTYTAWYLTIAAVVH-GQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFT 282 (487)
Q Consensus 204 ~~~~~~~~~~~~~~~~i~~-g~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~a~~~~~~ 282 (487)
..++-+++-.+++.+++.. ++..-.+..-..+..++..++|+++|+|..|...|.++..|++|++|+..+.++-+.+.+
T Consensus 268 ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHIAAaV 347 (524)
T KOG4303|consen 268 CTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHIAAAV 347 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHHHHHH
Confidence 8877776665666666642 222211111134556777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHccC--C----------C
Q 011392 283 LTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMH--D----------T 350 (487)
Q Consensus 283 ~y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--~----------~ 350 (487)
+-..+|..||++||+.| +..|.+|+|+..+..++++++.+--+.|||+-++.+.+.+|+-+... + .
T Consensus 348 fK~~Fg~~~fLTf~~~T--qevItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg 425 (524)
T KOG4303|consen 348 FKVVFGMLGFLTFGELT--QEVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDG 425 (524)
T ss_pred HHHHHHHheeeeechhh--HHHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCc
Confidence 99999999999999999 56899999987888999999999999999999999999999876411 1 1
Q ss_pred cchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHHHHHHhhhHhhhhhccCCCCCcccchhhHHH
Q 011392 351 KSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKASARQNAAEKPPFFLPSWTAMYA 430 (487)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (487)
+-+-+.+.+|+++++.+.++|+.+|+|..+++++|++.++.++|++|++||+++.+++-.. .++.
T Consensus 426 ~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~---------------~e~~ 490 (524)
T KOG4303|consen 426 SLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNN---------------FEKR 490 (524)
T ss_pred chhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhh---------------HHHh
Confidence 1223346689999999999999999999999999999999999999999999998776432 2566
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 011392 431 FNIFVVVWVFVVGFGFGGWASVTNFVRQVDS 461 (487)
Q Consensus 431 ~~~~~i~~~~~~~~v~Gt~~ai~~ii~~~~~ 461 (487)
.+..++++|+.++ |.|.|-+..++++++++
T Consensus 491 fD~~Ii~~G~~~~-vsG~y~S~~~Li~A~~~ 520 (524)
T KOG4303|consen 491 FDQGIIIMGCSVC-VSGVYFSSMELIRAINS 520 (524)
T ss_pred hheeEEEEeeeEE-EEeEehhhHHHHHHHhc
Confidence 7888888776665 59999999999999987
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-41 Score=339.82 Aligned_cols=343 Identities=18% Similarity=0.191 Sum_probs=283.5
Q ss_pred CccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHH
Q 011392 49 GGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (487)
Q Consensus 49 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (487)
+.|..++++|+.|+++|+|+|++|+||++.|++.|+++++++++++.++.+++.++..+.++ + +|++
T Consensus 5 ~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~----------~---ty~~ 71 (411)
T KOG1305|consen 5 KTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE----------R---TYSS 71 (411)
T ss_pred ccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC----------C---CHHH
Confidence 35788999999999999999999999999999999999999999999999998877433321 1 6999
Q ss_pred HHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhc-----c-cc-----ccchh-HHHHHHHHHhhhhccCCCcc
Q 011392 129 VLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYI-----N-DR-----LDKRT-WTYIFGACCATTVFIPSFHN 196 (487)
Q Consensus 129 l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~-----~-~~-----~~~~~-~~ii~~~i~~pl~~l~~l~~ 196 (487)
++++.+|+.++....+....+.+| ++.|++..+|.+..+ . +. .+++. |++....+..|+++.|++++
T Consensus 72 l~~~~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~ 150 (411)
T KOG1305|consen 72 LGDLIFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDS 150 (411)
T ss_pred HHHHHcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhh
Confidence 999999999966555555555555 577777777665321 0 11 12233 57778889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCC--CcccHHHHHHHHHHHHHHhccccchHHHHhhccCcc--chhH
Q 011392 197 YRIWSFLGLGMTTYTAWYLTIAAVVHGQ-VEGASHT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ--KFKY 271 (487)
Q Consensus 197 l~~~s~~~~~~~~~~~~~~~~~~i~~g~-~~~~~~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~--~~~~ 271 (487)
+++.|.++..++.+.++++++....... .+...+. ....+.+.+.++|+++|||.||.++.++++|||||+ ++++
T Consensus 151 Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~ 230 (411)
T KOG1305|consen 151 LKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQR 230 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHH
Confidence 9999999999998877776666665332 1211111 122236889999999999999999999999999994 5889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCchH-------HHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 011392 272 IYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRW-------RDAAVILMLIHQFITFGFACTPLYFVWEKV 344 (487)
Q Consensus 272 ~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~-------~~i~~~~~~i~~~~s~pl~~~p~~~~~~~~ 344 (487)
+...+...+.++|..+|.+||+.||+++ .+|++.++++..- ...++..+.++++.++|+..+|+|..+++.
T Consensus 231 v~~~~~~~~~~iy~~~g~~GYL~Fg~~v--~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~ 308 (411)
T KOG1305|consen 231 VSNIAIILATLIYLLTGLFGYLTFGDLV--KGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDEL 308 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheecccc--hHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 9999999999999999999999999999 5699999986322 368999999999999999999999998888
Q ss_pred HccCC----CcchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHHHHHHhhh
Q 011392 345 IGMHD----TKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRK 407 (487)
Q Consensus 345 ~~~~~----~~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~~l~~~~~ 407 (487)
+..+. ..++.++.+++..+.....+.|+.+|+++++++++||++++.++|++|+++|++..++
T Consensus 309 ~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~ 375 (411)
T KOG1305|consen 309 LFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK 375 (411)
T ss_pred hcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc
Confidence 75333 3567888999999999999999999999999999999999999999999999998776
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.98 E-value=3e-30 Score=263.21 Aligned_cols=342 Identities=16% Similarity=0.134 Sum_probs=247.7
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (487)
++.+..++++++.++++|+|+|++|++++..|++++++++++.+.++.++.+++.++..++++..+ ++.
T Consensus 7 ~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~-----------~~~ 75 (415)
T COG0814 7 KTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKA-----------SIT 75 (415)
T ss_pred CCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-----------cHH
Confidence 346788999999999999999999999999999999999999999999999999988766543321 699
Q ss_pred HHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----cc-ccchhHHHHHHHHHhhhhccCCCcchhHHH
Q 011392 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN-----DR-LDKRTWTYIFGACCATTVFIPSFHNYRIWS 201 (487)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~-----~~-~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s 201 (487)
+++++.+||+|+++......+.+++.+++|.+..++.+.... .. .++..+.+++..++.++++.++...++..+
T Consensus 76 ~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts 155 (415)
T COG0814 76 SLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITS 155 (415)
T ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 999999999999999999999999999999999888875432 22 677778888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC---CCCCCcccHHHHHHHHHHHHHHhccccchHHHHhhccCccc--hhHHHHHH
Q 011392 202 FLGLGMTTYTAWYLTIAAVVHGQVEG---ASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK--FKYIYLFA 276 (487)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~i~~g~~~~---~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~--~~~~~~~a 276 (487)
.+....+.+.+++..+..... +.++ .+...+..+.....++|+++|||+||+++|++++||+++++ .+|+...+
T Consensus 156 ~l~~~~v~~~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~ 234 (415)
T COG0814 156 LLVFGKVIYLVLLVVYLIPHW-NPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIG 234 (415)
T ss_pred HHHHHHHHHHHHHHHHHhccc-CHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHH
Confidence 998887765544433322221 1111 11111356677889999999999999999999999998744 89999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccCCCCchHHH--------------HHHHHHHHHHHHHHHhhhccHHHHHH
Q 011392 277 TLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRD--------------AAVILMLIHQFITFGFACTPLYFVWE 342 (487)
Q Consensus 277 ~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~--------------i~~~~~~i~~~~s~pl~~~p~~~~~~ 342 (487)
..+..++|+.+++++|..+|+.+ .++++.+.++..... ..+++..+.+..||--.....++..+
T Consensus 235 ~~~~~vlyi~~~~~~~~~~~~~~--~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~ 312 (415)
T COG0814 235 SLIALVLYILVGFFVFGCFGSLV--FGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLA 312 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcCccc--HHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhh
Confidence 99999999999999999999999 458999887643322 23334444444443333344445555
Q ss_pred HHHccCC-Cc----ch-hhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHHHHH
Q 011392 343 KVIGMHD-TK----SI-CLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHML 403 (487)
Q Consensus 343 ~~~~~~~-~~----~~-~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~~l~ 403 (487)
+.+++++ ++ .+ .............+...+...|..+.+++.+|+.....+.++.|...+.+
T Consensus 313 ~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~ 379 (415)
T COG0814 313 DLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYK 379 (415)
T ss_pred HHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5554311 11 11 11111222333334455555555555666666665555555555555443
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.94 E-value=4.5e-24 Score=214.44 Aligned_cols=341 Identities=16% Similarity=0.128 Sum_probs=247.6
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (487)
+.++.+++.+.+..|.||+|+|+||++.++.|+++++++++++++.+.|++.++.++..++++ + .++.
T Consensus 9 ~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-----g-------~~~~ 76 (414)
T PRK10483 9 TSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-----G-------SSFD 76 (414)
T ss_pred CCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----C-------CCHH
Confidence 347889999999999999999999999999999999999999999999999999887544321 1 1688
Q ss_pred HHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcc----ccccchhHHHHHHHHHhhhhccCCCcchhHHHHH
Q 011392 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN----DRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 203 (487)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~----~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~ 203 (487)
.++++.+||+|+.+..+...+..+..+++|+...++.+.... .+.+++.-.+++..++..+.+... +...+++.+
T Consensus 77 tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt-~~vd~~n~~ 155 (414)
T PRK10483 77 TITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLST-KAVSRMTAI 155 (414)
T ss_pred HHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhh-hHHHHHHHH
Confidence 999999999999988888888889999999988888775432 234555556667666666666533 444444433
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC---CCCCCCcccHHHHHHHHHHHHHHhccccchHHHHhhccC-ccchhHHHHHHHHH
Q 011392 204 GLGMTTYTAWYLTIAAVVHGQVE---GASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKYIYLFATLY 279 (487)
Q Consensus 204 ~~~~~~~~~~~~~~~~i~~g~~~---~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~-p~~~~~~~~~a~~~ 279 (487)
-....+...+..+.....+-+.+ +.....+..+...+.++|++++||+.|+++|++.+++++ ++|.+|++..+..+
T Consensus 156 l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~I 235 (414)
T PRK10483 156 VLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLM 235 (414)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHH
Confidence 33322221112111111111111 111122233456789999999999999999999999875 58899999999999
Q ss_pred HHHHHHHHHHHHHHh-----------hccccccccccccCC----CCchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 011392 280 VFTLTIPSATAVYWS-----------FGDQLLNHSNAFSLL----PKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKV 344 (487)
Q Consensus 280 ~~~~y~~~g~~gy~~-----------fG~~~~~~~~il~~~----~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~~~~~ 344 (487)
..++|++.=...... -|++. +..+..+ ++.....+..++..+++.+||--.....+|.+.+.
T Consensus 236 plv~yl~W~~~~lg~l~~~~~~~~~~~~~ni---~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~ 312 (414)
T PRK10483 236 ALALYTIWLLATMGNIPRPEFIGIAEKGGNI---DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADL 312 (414)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh---HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998743222222 12221 1111222 22334467888999999999999999999999999
Q ss_pred HccCCCcchhhhhhhhhhHHHHHHHHHHhcCc-hhhHHHhhhhHHHhHHHHhhhHHHHHHHhhh
Q 011392 345 IGMHDTKSICLRALARLPVVIPIWFLAIIFPF-FGPINSAVGALLVSFTVYIIPSLAHMLTYRK 407 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vP~-~~~vl~lvGa~~~~~l~filP~l~~l~~~~~ 407 (487)
++.+++ ...|........+++.++|...|+ |-..+++.|.. ...+..++|+++.++.||+
T Consensus 313 ~k~~~~--~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 313 FGFDDS--AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred hCCCCc--cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 975432 335665667888999999999997 89999999977 5677789999999988754
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.93 E-value=2.1e-23 Score=211.57 Aligned_cols=344 Identities=13% Similarity=0.124 Sum_probs=243.7
Q ss_pred CccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHH
Q 011392 49 GGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (487)
Q Consensus 49 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (487)
+.+.+++.+.+..+.+|+|+|+||++.+..|++++++++++++.++.++..++.|...+.++. .++.+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~------------~~~~~ 69 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEG------------SSLTS 69 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------CCHHH
Confidence 457889999999999999999999999999999999999999999999999888775444321 17999
Q ss_pred HHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----ccccchhHHHHHHHHHhhhhccCCCcchhHHHHH
Q 011392 129 VLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN-----DRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 203 (487)
Q Consensus 129 l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~-----~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~ 203 (487)
++++.+||+|+.+..+...+..+...++|....++.+.... .+.+++.-..++.+++..+.+..+ +-..+.+..
T Consensus 70 ~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~-~~v~~~n~~ 148 (394)
T PF03222_consen 70 MAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGT-KAVDRINRV 148 (394)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhH-HHHHHHHHH
Confidence 99999999999999888888888999999988887765432 223344433444444444433321 222223222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCC--CCcccHHHHHHHHHHHHHHhccccchHHHHhhcc-CccchhHHHHHHHHHH
Q 011392 204 GLGMTTYTAWYLTIAAVVHGQVEGASH--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMW-KPQKFKYIYLFATLYV 280 (487)
Q Consensus 204 ~~~~~~~~~~~~~~~~i~~g~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~a~~~~ 280 (487)
-+...+.....++...+.+-+.++... ..+.++...+.++|++++||..|.++|++.+.++ |++|.+|++..+..+.
T Consensus 149 lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~ 228 (394)
T PF03222_consen 149 LVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIP 228 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 222222111111111221112222211 1245677888999999999999999999999998 5688999999999999
Q ss_pred HHHHHHHHHHHHH-----------hhccccccccccccCCC-CchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHccC
Q 011392 281 FTLTIPSATAVYW-----------SFGDQLLNHSNAFSLLP-KNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMH 348 (487)
Q Consensus 281 ~~~y~~~g~~gy~-----------~fG~~~~~~~~il~~~~-~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~ 348 (487)
.++|++.-...-. .-|++..+-...+.+.. ++....+..++..+++.+||--....++|.+.+.++.+
T Consensus 229 lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~ 308 (394)
T PF03222_consen 229 LVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLK 308 (394)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888864322211 11111100001222322 33445778999999999999999999999999999752
Q ss_pred CCcchhhhhhhhhhHHHHHHHHHHhcCc-hhhHHHhhhhHHHhHHHHhhhHHHHHHHhhhH
Q 011392 349 DTKSICLRALARLPVVIPIWFLAIIFPF-FGPINSAVGALLVSFTVYIIPSLAHMLTYRKA 408 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~lA~~vP~-~~~vl~lvGa~~~~~l~filP~l~~l~~~~~~ 408 (487)
+....|........+++.++|...|+ |-..+++.| .....+..++|.++.++.++++
T Consensus 309 --~~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~ 366 (394)
T PF03222_consen 309 --NNSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRK 366 (394)
T ss_pred --ccccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHccc
Confidence 23344555566778889999999997 899999999 8889999999999999976654
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.93 E-value=3.1e-23 Score=208.23 Aligned_cols=337 Identities=15% Similarity=0.128 Sum_probs=242.0
Q ss_pred cHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHHHH
Q 011392 51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL 130 (487)
Q Consensus 51 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~ 130 (487)
+.+++...+..|.||+|+|+||.+.+++|+.+++++++++++.+.||+.++.++..++++ + .++..++
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-----g-------~~l~tma 77 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-----G-------SSFNTIT 77 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----C-------CCHHHHH
Confidence 667788999999999999999999999999999999999999999999999887555431 1 1688999
Q ss_pred HhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccc-----cccchhHHHHHHHHHhhhhccCCCcchhHHHHHHH
Q 011392 131 DGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND-----RLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 205 (487)
Q Consensus 131 ~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~-----~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~ 205 (487)
++.+||+|+.+..+...+..+..+++|+...++.+..... +.+++...+++..++.++.+... +...+.+.+=.
T Consensus 78 ~~~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt-~~vd~~nr~l~ 156 (415)
T PRK09664 78 KDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISS-LAASRITSLFL 156 (415)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHH
Confidence 9999999999998888888899999999988887754321 33444445666666666666543 44444443332
Q ss_pred HHHHHHHHHHHHHHHh-cCCCCCCCCCC-----cccHHHHHHHHHHHHHHhccccchHHHHhhccC-ccchhHHHHHHHH
Q 011392 206 GMTTYTAWYLTIAAVV-HGQVEGASHTA-----PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKYIYLFATL 278 (487)
Q Consensus 206 ~~~~~~~~~~~~~~i~-~g~~~~~~~~~-----~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~-p~~~~~~~~~a~~ 278 (487)
...+.. +++.+.... +-+.++....+ ...+...+.++|++++||+.|+++|++.+.+++ ++|.+|++.....
T Consensus 157 ~~~ii~-f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~ 235 (415)
T PRK09664 157 GLKIIS-FVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSL 235 (415)
T ss_pred HHHHHH-HHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHH
Confidence 222211 122122211 11111111100 111345778999999999999999999999875 4788888888888
Q ss_pred HHHHHHHHH--HHHH---------HHhhcccccccccccc----CCCCchHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Q 011392 279 YVFTLTIPS--ATAV---------YWSFGDQLLNHSNAFS----LLPKNRWRDAAVILMLIHQFITFGFACTPLYFVWEK 343 (487)
Q Consensus 279 ~~~~~y~~~--g~~g---------y~~fG~~~~~~~~il~----~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~~~~ 343 (487)
+..++|++- ++.| -...|+++ +..+. +.+......+..++..+++.+||--....++|.+.+
T Consensus 236 IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv---~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D 312 (415)
T PRK09664 236 LALVIYLFWLYCTMGNIPRESFKAIISSGGNV---DSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLAD 312 (415)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCc---hHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888652 2222 12233333 11111 223334456788899999999999999999999999
Q ss_pred HHccCCCcchhhhhhhhhhHHHHHHHHHHhcCc-hhhHHHhhhhHHHhHHHHhhhHHHHHHHhhh
Q 011392 344 VIGMHDTKSICLRALARLPVVIPIWFLAIIFPF-FGPINSAVGALLVSFTVYIIPSLAHMLTYRK 407 (487)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vP~-~~~vl~lvGa~~~~~l~filP~l~~l~~~~~ 407 (487)
.++.+++ ...|........+++.+++...|+ |-..++..|.. ...+..++|+++-++.||+
T Consensus 313 ~~~~~~~--~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 313 LFKIDNS--HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred HhCCCCc--cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 9975432 345666667888999999999998 89999999996 5678889999999998754
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.92 E-value=5e-22 Score=200.65 Aligned_cols=340 Identities=14% Similarity=0.127 Sum_probs=238.1
Q ss_pred cHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHHHH
Q 011392 51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL 130 (487)
Q Consensus 51 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~ 130 (487)
+.+++.+.+..|.+|+|+|+||.+....|++++++++++++.++.|+++++.|+..+++ ++ .++.+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~-----~~-------~~~~~~a 71 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP-----AD-------TGLGTLA 71 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----CC-------CCHHHHH
Confidence 67889999999999999999999999999999999999999999999999887533221 11 1689999
Q ss_pred HhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhc-----cccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHH
Q 011392 131 DGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYI-----NDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 205 (487)
Q Consensus 131 ~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~-----~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~ 205 (487)
++.+||+|+++..+...+..+..+++|...+++.+... ..+.+.....+.+.++.....+... +...+++..=+
T Consensus 72 ~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~-~~v~~~n~~L~ 150 (403)
T PRK15132 72 KRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGT-SSVDLFNRFLF 150 (403)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccH-HHHHHHHHHHH
Confidence 99999999999998888888999999999877766432 2233444455555554444444332 33333332222
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHHHHHHhccccchHHHHhhccC-ccchhHHHHHHHHHHHHHH
Q 011392 206 GMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKYIYLFATLYVFTLT 284 (487)
Q Consensus 206 ~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~-p~~~~~~~~~a~~~~~~~y 284 (487)
...+...+......+.+-+.++.... +.+..-.+.++|++.+||+.|+++|++.+.+++ ++|.+|++..+..+..++|
T Consensus 151 ~~~ii~~~~~~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~y 229 (403)
T PRK15132 151 SAKIIFLVVMLALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAY 229 (403)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 21111111111111111111111111 111113778899999999999999999999875 5889999999999999998
Q ss_pred HHHHHHHHHhhcccc-----cccc---ccccCC----CCchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHccCCCcc
Q 011392 285 IPSATAVYWSFGDQL-----LNHS---NAFSLL----PKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKS 352 (487)
Q Consensus 285 ~~~g~~gy~~fG~~~-----~~~~---~il~~~----~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~ 352 (487)
+..=......-+.+. .++. +++..+ +.+....+..++..+++.+||--....++|.+.+.++++++
T Consensus 230 l~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~-- 307 (403)
T PRK15132 230 IFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT-- 307 (403)
T ss_pred HHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc--
Confidence 875444443333221 0011 222222 22344567889999999999999999999999999864332
Q ss_pred hhhhhhhhhhHHHHHHHHHHhcCc-hhhHHHhhhhHHHhHHHHhhhHHHHHHHhhh
Q 011392 353 ICLRALARLPVVIPIWFLAIIFPF-FGPINSAVGALLVSFTVYIIPSLAHMLTYRK 407 (487)
Q Consensus 353 ~~~~~~~~~~~~~~~~~lA~~vP~-~~~vl~lvGa~~~~~l~filP~l~~l~~~~~ 407 (487)
...|........+++.++|...|+ |...+++.|.. ...+.+++|+++-++.+++
T Consensus 308 ~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~ 362 (403)
T PRK15132 308 VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQ 362 (403)
T ss_pred ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Confidence 333666677888999999999997 89999999975 6888899999999987754
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.91 E-value=2.3e-22 Score=205.03 Aligned_cols=335 Identities=16% Similarity=0.079 Sum_probs=239.1
Q ss_pred HHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHHHHHhhhCc
Q 011392 57 FSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGP 136 (487)
Q Consensus 57 ~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~ 136 (487)
...+++++|+|++++|.++++.|+.++++++++.++++.++...+.++..++++. + ++.+.+++.+||
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~----~--------~~~~~~~~~~G~ 71 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGG----A--------SFNTIAKDLLGK 71 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----C--------CHHHHHHHHhCH
Confidence 4567999999999999999999999999999999999999988887765443211 1 699999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhc-----cccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Q 011392 137 YWKAVGLAFNCTFLLFGSVIQLIACASNIYYI-----NDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYT 211 (487)
Q Consensus 137 ~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~-----~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~~~~~~~ 211 (487)
+++++..+...+.++..+.+|.+..++.+..+ ....+...+.+++..++.++.. +..+...+++.+.+...+..
T Consensus 72 ~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~l~~ 150 (381)
T TIGR00837 72 TGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGKIIA 150 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHH
Confidence 99999888888888888888888766655332 1223333333344444444443 34566666766665554433
Q ss_pred HHHHHHHHHhcCCCCCCCC--CCcccHHHHHHHHHHHHHHhccccchHHHHhhcc-CccchhHHHHHHHHHHHHHHHHHH
Q 011392 212 AWYLTIAAVVHGQVEGASH--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMW-KPQKFKYIYLFATLYVFTLTIPSA 288 (487)
Q Consensus 212 ~~~~~~~~i~~g~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~a~~~~~~~y~~~g 288 (487)
.+++++....+.+.++... ..+..+.+++.+++...++|++|.+++++.++++ ++||.+|+...+..++.++|+.+.
T Consensus 151 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~ 230 (381)
T TIGR00837 151 FALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQ 230 (381)
T ss_pred HHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333333222211111 1123556788899999999999999999999997 557889999999999999999887
Q ss_pred HHHHHhhcccccc-----ccc------cccC-CCCchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHccCCCcchhhh
Q 011392 289 TAVYWSFGDQLLN-----HSN------AFSL-LPKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLR 356 (487)
Q Consensus 289 ~~gy~~fG~~~~~-----~~~------il~~-~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~ 356 (487)
+......+.+..+ .++ .+.. +++.....++..+..+++.+|+.-...+.+|.+.+.+++++++ .+|
T Consensus 231 ~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~--~~~ 308 (381)
T TIGR00837 231 LATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSK--KGR 308 (381)
T ss_pred HHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--CCC
Confidence 6666555444211 001 1111 2323345678888899999999999999999999888754322 234
Q ss_pred hhhhhhHHHHHHHHHHhcCchh-hHHHhhhhHHHhHHHHhhhHHHHHHHhhh
Q 011392 357 ALARLPVVIPIWFLAIIFPFFG-PINSAVGALLVSFTVYIIPSLAHMLTYRK 407 (487)
Q Consensus 357 ~~~~~~~~~~~~~lA~~vP~~~-~vl~lvGa~~~~~l~filP~l~~l~~~~~ 407 (487)
........+++.++|...|+.. ..++..| +....+.+++|++++++.||+
T Consensus 309 ~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 309 FKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred chhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 5566777889999999999855 8999999 888999999999999987654
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.85 E-value=4.7e-18 Score=170.95 Aligned_cols=364 Identities=12% Similarity=0.063 Sum_probs=237.8
Q ss_pred ccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHHH
Q 011392 50 GSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (487)
Q Consensus 50 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 129 (487)
.+.| ...+..+.+|+|+|+||......|.++.++++++++.+++|+...+.|.....++ ++ .++.++
T Consensus 21 d~~W--~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~----~~-------~~i~~v 87 (443)
T PRK13629 21 DTTW--TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN----PS-------GNITET 87 (443)
T ss_pred cchH--HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----CC-------CCHHHH
Confidence 4555 3889999999999999999999999999999999999999998888776433311 11 169999
Q ss_pred HHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccc-cccchhHHHHHHHHHhhhhccCCCcchhHHHHH
Q 011392 130 LDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-----IND-RLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 203 (487)
Q Consensus 130 ~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~-----~~~-~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~ 203 (487)
+++.+||+|+.+..+..++.++..+.+|.....+.+.. +.. ..++....+++..++....+... +.+-+++..
T Consensus 88 ~~~~lG~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~-~~v~kv~~~ 166 (443)
T PRK13629 88 VEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGK-DLMVKVMSY 166 (443)
T ss_pred HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHH
Confidence 99999999999988888888888888998665554432 222 33444445555555555555432 223333222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCC---C-----CCCc-ccHHHHHHHHHHHHHHhccccchHHHHhh----cc-----C
Q 011392 204 GLGMTTYTAWYLTIAAVVHGQVEGA---S-----HTAP-TKLVLYFTGATNILYTFGGHAVTVEIMHA----MW-----K 265 (487)
Q Consensus 204 ~~~~~~~~~~~~~~~~i~~g~~~~~---~-----~~~~-~~~~~~~~~~~~~~faf~~~~~i~~i~~~----m~-----~ 265 (487)
=+...+...+.+.+.-+.+=+.++. + .... ......+.++|++++||+.|+++|++... ++ +
T Consensus 167 Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~ 246 (443)
T PRK13629 167 LVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRD 246 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccc
Confidence 2111111111111111111010111 1 0001 11235788999999999999999999888 43 3
Q ss_pred --ccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccc-----cccccc----cCCCC---------chHHHHHHHHHHHH
Q 011392 266 --PQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLL-----NHSNAF----SLLPK---------NRWRDAAVILMLIH 325 (487)
Q Consensus 266 --p~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~-----~~~~il----~~~~~---------~~~~~i~~~~~~i~ 325 (487)
++|.+|++..+..+.+++|+..-+.....-+++.. ++.+++ +.+++ +.......++..++
T Consensus 247 ~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~A 326 (443)
T PRK13629 247 FTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVA 326 (443)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHH
Confidence 46678888999999999888877666655554431 012222 22333 22346677888889
Q ss_pred HHHHHHhhhccHHHHHHHHHc----cC-C--CcchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhH
Q 011392 326 QFITFGFACTPLYFVWEKVIG----MH-D--TKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPS 398 (487)
Q Consensus 326 ~~~s~pl~~~p~~~~~~~~~~----~~-~--~~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~ 398 (487)
+.+||--....++|.++.+.. +. + ...+..+......+.+.++.++..-|++=.+++-+|+-....+.|++|.
T Consensus 327 I~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~ 406 (443)
T PRK13629 327 IFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPM 406 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHH
Confidence 999998889999999888762 11 1 1223334455667777889999999998888886666666778889998
Q ss_pred HHHHHHhhhHhhhhhccCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 011392 399 LAHMLTYRKASARQNAAEKPPFFLPSWTAMYAFNIFVVVWVFVVGF 444 (487)
Q Consensus 399 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 444 (487)
..-.|.-.-++.| . +..|+++++. |++.+
T Consensus 407 y~i~kvp~l~~yr------------~----~~~n~fv~~~-Gl~~i 435 (443)
T PRK13629 407 YAIRKAPSLAKYR------------G----RLDNVFVTVI-GLLTI 435 (443)
T ss_pred HHHHccHHHHHhC------------C----CchhHHHHHH-HHHHH
Confidence 8777654433222 1 2247888874 66654
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.77 E-value=5.9e-16 Score=156.95 Aligned_cols=340 Identities=11% Similarity=0.028 Sum_probs=222.9
Q ss_pred HHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHHHHHhhhC
Q 011392 56 WFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLG 135 (487)
Q Consensus 56 ~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G 135 (487)
.+.+..+.+|+|+|++|....+.||+..++..++...++.++..++.|.....+ + ++ .++.|++++.||
T Consensus 9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~--~--p~-------~~i~~~~~~~fG 77 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK--N--PC-------EDITEVVEEHFG 77 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--C--CC-------CCHHHHHHHHcC
Confidence 578999999999999999999999998888888877777777777766532221 1 01 169999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccccccchhHHH-HHHHHHhhhhccCCCcchhHHHHHHHHHHH
Q 011392 136 PYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-----INDRLDKRTWTY-IFGACCATTVFIPSFHNYRIWSFLGLGMTT 209 (487)
Q Consensus 136 ~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~-----~~~~~~~~~~~i-i~~~i~~pl~~l~~l~~l~~~s~~~~~~~~ 209 (487)
|+++.+..+..+++.+..+.+|....++.... ...+.+.+.... ++..++.... ....+.+.+++.+-....+
T Consensus 78 k~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv-~~G~~~i~r~~~il~~~~i 156 (397)
T TIGR00814 78 KNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIM-SFGEKLLFKIMGPLVFPLV 156 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH-HhcHHHHHHHHHHHHHHHH
Confidence 99999999888888888888887666554322 122223332222 2222222222 2344555555544443332
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCC--cccHHHHHHHHHHHHHHhccccchHHHHh----hcc--C--ccchhHHHHHHHHH
Q 011392 210 YTAWYLTIAAVVHGQVEGASHTA--PTKLVLYFTGATNILYTFGGHAVTVEIMH----AMW--K--PQKFKYIYLFATLY 279 (487)
Q Consensus 210 ~~~~~~~~~~i~~g~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~i~~i~~----~m~--~--p~~~~~~~~~a~~~ 279 (487)
...+++....+.+-+.++....+ ...+.+...+++..++||.+|+++|++.. +.+ | ++|.+|+...+..+
T Consensus 157 i~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i 236 (397)
T TIGR00814 157 LILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLI 236 (397)
T ss_pred HHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 22222222233222222221111 12356788999999999999999999973 344 2 35678888899999
Q ss_pred HHHHHHHHHHHHHHhhcccccc---ccc--ccc----CCCCchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHc----
Q 011392 280 VFTLTIPSATAVYWSFGDQLLN---HSN--AFS----LLPKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIG---- 346 (487)
Q Consensus 280 ~~~~y~~~g~~gy~~fG~~~~~---~~~--il~----~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~~~~~~~---- 346 (487)
.+++|+..-+......+++... ++| .+. ..+.+....+..++..+++.+||--....++|.+.+.+.
T Consensus 237 ~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~ 316 (397)
T TIGR00814 237 LVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLK 316 (397)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 9988888777766666655421 012 122 223344456788888889999999999999999988872
Q ss_pred cCC--CcchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHHHHHHhhh
Q 011392 347 MHD--TKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRK 407 (487)
Q Consensus 347 ~~~--~~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~~l~~~~~ 407 (487)
.++ .+++.........+.+.++.++..-|++=.+++-+|+-....+.|++|...-.|.-.-
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l 379 (397)
T TIGR00814 317 MKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPAL 379 (397)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHH
Confidence 111 1223334445567777889999999998888886666555677788898877765443
No 16
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.56 E-value=3.4e-12 Score=129.19 Aligned_cols=338 Identities=15% Similarity=0.138 Sum_probs=193.7
Q ss_pred CccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHH
Q 011392 49 GGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (487)
Q Consensus 49 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (487)
+.|.+|....++.+++|+|++.+|....+.+-..+++..++.+++......+..+...++++. +..|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-------------~~~~ 68 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-------------NFSE 68 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHH
Confidence 467889999999999999999999987764444566666777777776666665554333211 5778
Q ss_pred HHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhh-ccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Q 011392 129 VLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGM 207 (487)
Q Consensus 129 l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~-~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~~~ 207 (487)
..++.+||+..++.......+....+.......++.+.. +.++.+.....+.+..+ .-....+.++.+.+++.+-...
T Consensus 69 ~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp~~~~~l~~l~~-~~~~~~~Gi~~i~r~~~i~~~~ 147 (359)
T TIGR00912 69 ILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYLLPRTPIIVIIILIIIV-SIYIVRKGIEVLLRTAEILLII 147 (359)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHHHccHHHHHHHHHHHHHH
Confidence 999999999888876666666555443333333443322 12222222211112222 1222334556666665555443
Q ss_pred HHHH-HHHHHHHHHhcCCCCCCCCCCcccHHHHHHHH-HHHHHHhccccchHHHHhhccCccchhHHHHHHHHHHHHHHH
Q 011392 208 TTYT-AWYLTIAAVVHGQVEGASHTAPTKLVLYFTGA-TNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTI 285 (487)
Q Consensus 208 ~~~~-~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~-~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~a~~~~~~~y~ 285 (487)
.+.. .+++......+.+..+.....+.++.+.+.+. +...++|.+...+.....++|+||+.+|....+..++.++|.
T Consensus 148 ~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly~ 227 (359)
T TIGR00912 148 FLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLYI 227 (359)
T ss_pred HHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHH
Confidence 3322 11111112222222222211223445555444 367889988888888888999999999999999999999999
Q ss_pred HHHHHHHHhhccccccc--ccccc---CCCCc----hHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHccCCCcchhhh
Q 011392 286 PSATAVYWSFGDQLLNH--SNAFS---LLPKN----RWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLR 356 (487)
Q Consensus 286 ~~g~~gy~~fG~~~~~~--~~il~---~~~~~----~~~~i~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~ 356 (487)
..-+.....+|.+..++ -+... ..+-+ +...+.-.......+.+..+........+.+.++.++.+ .
T Consensus 228 ~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~ 303 (359)
T TIGR00912 228 LTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKYS----I 303 (359)
T ss_pred HHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc----h
Confidence 98888888888765221 11111 11111 112334455556666677777777788888887633221 1
Q ss_pred hhhhhhHHHHHHHHHHhcCc-hhhH---HHhhhhHHHhHHHHhhhHHHHHHHhhhH
Q 011392 357 ALARLPVVIPIWFLAIIFPF-FGPI---NSAVGALLVSFTVYIIPSLAHMLTYRKA 408 (487)
Q Consensus 357 ~~~~~~~~~~~~~lA~~vP~-~~~v---l~lvGa~~~~~l~filP~l~~l~~~~~~ 408 (487)
++. .+....+.++ ..|+ .+.. .+..+ ..+....+++|.++.+....|+
T Consensus 304 ~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~~ik~ 355 (359)
T TIGR00912 304 LIL--PVLMVIFSIS-FFPDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIVKIKN 355 (359)
T ss_pred hHH--HHHHHHHHHH-HccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 211 1111222223 3565 3221 22222 3335667789999888776544
No 17
>PRK10249 phenylalanine transporter; Provisional
Probab=99.51 E-value=2.1e-10 Score=119.80 Aligned_cols=228 Identities=11% Similarity=0.045 Sum_probs=126.0
Q ss_pred CccHHHHHHHHHHhHhhhhhcchH-HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHH
Q 011392 49 GGSAWDAWFSCASNQVAQVLLTLP-YSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (487)
Q Consensus 49 ~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (487)
+.+.++..+..++.++|+|++..| .+.+++|- ..++..++.+++....+.-+. |...+.+..| ...
T Consensus 22 ~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~a----El~~~~P~~G--------g~~ 88 (458)
T PRK10249 22 GLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLG----EMVVEEPVSG--------SFA 88 (458)
T ss_pred cCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHH----HHHHhCCCCC--------CHH
Confidence 467788888999999999999888 45556675 355555555655554444444 4444433323 455
Q ss_pred HHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHH--
Q 011392 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL-- 205 (487)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~-- 205 (487)
+.+++.+|+.+..+......+.............+..+.++.+..+...+.+....+...+ -.+..+..+.+.....
T Consensus 89 ~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l-N~~gv~~~~~i~~~~~~i 167 (458)
T PRK10249 89 HFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAV-NLVNVRLYGETEFWFALI 167 (458)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHHHHHHHH-HHhcchhhhhHHHHHHHH
Confidence 6788999999888766654443333333333333333333333333222222222221111 1222232322222111
Q ss_pred -HHHHHHHHHHHHHHHhcCC---CCCCCC----C--CcccHHHHHHHHHHHHHHhccccchHHHHhhccCcc-chhHHHH
Q 011392 206 -GMTTYTAWYLTIAAVVHGQ---VEGASH----T--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKYIYL 274 (487)
Q Consensus 206 -~~~~~~~~~~~~~~i~~g~---~~~~~~----~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~ 274 (487)
+..+...+.+.+..+..+. ..+.+. . .+.++..+..++....|+|.|-......-.|+|||+ +.+|++.
T Consensus 168 kv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~ 247 (458)
T PRK10249 168 KVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVN 247 (458)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHH
Confidence 1111111011111111111 111111 1 124566778889999999999999999999999995 5799998
Q ss_pred HHHHHHHHHHHHHHHH
Q 011392 275 FATLYVFTLTIPSATA 290 (487)
Q Consensus 275 ~a~~~~~~~y~~~g~~ 290 (487)
.+.....++|....+.
T Consensus 248 ~~~~~~~~~y~~~~~~ 263 (458)
T PRK10249 248 QVVYRILLFYIGSLVV 263 (458)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888765443
No 18
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.45 E-value=9.3e-10 Score=114.92 Aligned_cols=229 Identities=11% Similarity=0.083 Sum_probs=130.4
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchH-HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLP-YSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (487)
++.+.++..+..+++++|+|++.+| .+.+++|-. +++..++.+++....+..+. |...+.+..+ ..
T Consensus 12 ~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~a----El~s~~P~~G--------g~ 78 (452)
T TIGR01773 12 NGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLG----EMAVANPDTG--------SF 78 (452)
T ss_pred CcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHH----HHHHhcCCCC--------CH
Confidence 3478888999999999999999999 778888863 66666666666554443344 4443332222 35
Q ss_pred HHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Q 011392 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (487)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~~ 206 (487)
.+.+++.+||....+....................+..+.+..+..+...+.++...+... .-.+..+..+++.....+
T Consensus 79 ~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~n~~gv~~~~~~~~~~~~ 157 (452)
T TIGR01773 79 STYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDIPLWLFSLILTIVLTL-TNLYSVKSYGEFEFWFAL 157 (452)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHH-HHHHhcchhhHHHHHHHH
Confidence 5678899999988876665554433333333333333333333333322222222222111 112233444444333222
Q ss_pred HHHHHHHHHHHHH---HhcCCC----CCCCC------CCcccHHHHHHHHHHHHHHhccccchHHHHhhccCcc-chhHH
Q 011392 207 MTTYTAWYLTIAA---VVHGQV----EGASH------TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKYI 272 (487)
Q Consensus 207 ~~~~~~~~~~~~~---i~~g~~----~~~~~------~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~ 272 (487)
.-+...+.+++.. ...+.. .+.+. ..+..+..++.++....|+|.|.......-.|+|||+ +.+|+
T Consensus 158 ~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrA 237 (452)
T TIGR01773 158 IKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRA 237 (452)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHH
Confidence 2111111111111 111110 01110 1133455688889999999999999999999999995 68998
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011392 273 YLFATLYVFTLTIPSATA 290 (487)
Q Consensus 273 ~~~a~~~~~~~y~~~g~~ 290 (487)
+..+.....++|+.....
T Consensus 238 i~~~~~~~~~~y~l~~~~ 255 (452)
T TIGR01773 238 TNSVIWRIIVFYLGSIFI 255 (452)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 877777778888875443
No 19
>TIGR00909 2A0306 amino acid transporter.
Probab=99.45 E-value=6.4e-10 Score=115.37 Aligned_cols=233 Identities=8% Similarity=-0.022 Sum_probs=133.8
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchHHHHH-hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFS-QMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (487)
++.+.++.+...+++++|+|++.+|.... ..|. ..++..++.+++......... |..++.++.+ ..
T Consensus 3 r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~----el~~~~p~~G--------g~ 69 (429)
T TIGR00909 3 RELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYA----ELAAMLPVAG--------SP 69 (429)
T ss_pred ccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHH----HHHhhcCCCC--------cc
Confidence 44788899999999999999999996554 4453 244445555555554443343 3333333222 23
Q ss_pred HHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcc----ccccchh-----------HHHHHHHHHhhhhcc
Q 011392 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN----DRLDKRT-----------WTYIFGACCATTVFI 191 (487)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~----~~~~~~~-----------~~ii~~~i~~pl~~l 191 (487)
.+..++.+||+...+..+...+........+....++.+..+. .+.+... +..+...+..-..-.
T Consensus 70 y~~~~~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 149 (429)
T TIGR00909 70 YTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILY 149 (429)
T ss_pred eeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHH
Confidence 3456778999988776655554433333333333333222111 1111111 111111122222233
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHHHHHHhccccchHHHHhhccCc-cchh
Q 011392 192 PSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFK 270 (487)
Q Consensus 192 ~~l~~l~~~s~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~ 270 (487)
+..+..++++.+.....+...+.+++.+..+.+.++.+...+.++..+..++...+|+|.|.........|+||| |+.+
T Consensus 150 ~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip 229 (429)
T TIGR00909 150 LGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIP 229 (429)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCcccccc
Confidence 445666666655544443322222223333222222222223455677888889999999999999999999999 5689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011392 271 YIYLFATLYVFTLTIPSATAVYW 293 (487)
Q Consensus 271 ~~~~~a~~~~~~~y~~~g~~gy~ 293 (487)
|++..+..++.++|+...+....
T Consensus 230 ~ai~~~~~~~~v~Yil~~~~~~~ 252 (429)
T TIGR00909 230 KAIILSLIVVTLLYVLVAAVILG 252 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988765543
No 20
>PRK15049 L-asparagine permease; Provisional
Probab=99.42 E-value=2e-09 Score=113.54 Aligned_cols=344 Identities=11% Similarity=0.059 Sum_probs=165.9
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (487)
++.+.++..+..++.+||+|++..|. +++++|- .+++..++.+++....+.-+.++ ..+.+..| ..
T Consensus 28 r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaEL----as~~P~aG--------g~ 94 (499)
T PRK15049 28 KAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGEL----VLHRPSSG--------SF 94 (499)
T ss_pred ccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHH----HHhCCCCC--------CH
Confidence 34678888899999999999998885 7778885 35666666566555554444443 33333222 35
Q ss_pred HHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--ccccchhHHHHHHHHHhhhhccCCCcchhHHHHHH
Q 011392 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN--DRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 204 (487)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~--~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~ 204 (487)
..-+++.+|++...+......+.............+....+.. ...+...+.+++..++..+ -++..+....+....
T Consensus 95 y~y~~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i-N~~gvk~~~~i~~~~ 173 (499)
T PRK15049 95 VSYAREFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTM-NMIGVKWFAEMEFWF 173 (499)
T ss_pred HHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 5677888999887765555443322222222211222122211 1122222222221111111 122223333332222
Q ss_pred HHHHHH-HHHHHHH--HHHhcCCCC-----CCC------CCCcccHHHHHHHHHHHHHHhccccchHHHHhhccCccc-h
Q 011392 205 LGMTTY-TAWYLTI--AAVVHGQVE-----GAS------HTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-F 269 (487)
Q Consensus 205 ~~~~~~-~~~~~~~--~~i~~g~~~-----~~~------~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~ 269 (487)
...-+. ...+++. ..+..+... +.. ...+..+..++.++...+|+|.|-..+...-.|+|||+| .
T Consensus 174 ~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~i 253 (499)
T PRK15049 174 ALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMV 253 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHH
Confidence 211111 1111111 111122111 111 011234445566677889999999999999999999954 8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--cccc---ccCCCCchHHHHHHHHHHHHHHHHHHhhh-ccHHHHH--
Q 011392 270 KYIYLFATLYVFTLTIPSATAVYWSFGDQLLN--HSNA---FSLLPKNRWRDAAVILMLIHQFITFGFAC-TPLYFVW-- 341 (487)
Q Consensus 270 ~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~--~~~i---l~~~~~~~~~~i~~~~~~i~~~~s~pl~~-~p~~~~~-- 341 (487)
+|++..++....++|+..........+.+..+ .++. ......+....+..+...++.+.+.--.. .+.|..+
T Consensus 254 PrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~ 333 (499)
T PRK15049 254 PKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSM 333 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888887655443333322111 0111 11111122223444444444444432222 2222221
Q ss_pred ------HHHHccCCCcchhhhhh-hhhhHHHHHHHHHHhcCc--hhhHHHhhhhHHHhHHHHhhhHHHHHHHhhh
Q 011392 342 ------EKVIGMHDTKSICLRAL-ARLPVVIPIWFLAIIFPF--FGPINSAVGALLVSFTVYIIPSLAHMLTYRK 407 (487)
Q Consensus 342 ------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~lA~~vP~--~~~vl~lvGa~~~~~l~filP~l~~l~~~~~ 407 (487)
.+.+.+-+++....+.+ +..++.++..++....|. ++.++++.+ .+..+.|++|.+.+++++|+
T Consensus 334 Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 334 AMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred HhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 11222111222222222 222222222222223342 555555544 34588899999999998654
No 21
>PRK10655 potE putrescine transporter; Provisional
Probab=99.41 E-value=1.9e-09 Score=112.12 Aligned_cols=232 Identities=13% Similarity=-0.043 Sum_probs=125.4
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (487)
++.+.++.+...+++++|+|++.+|..+++.|- .+++..++.+++......... |...+.++++ ...
T Consensus 6 ~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~a----eL~~~~P~~G--------G~y 72 (438)
T PRK10655 6 NKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFA----KCGMFSRKSG--------GMG 72 (438)
T ss_pred CcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHH----HHhhhCCCCC--------chH
Confidence 347888999999999999999999999988886 355556665555554443343 3333332222 234
Q ss_pred HHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccc-cccchhHHHHHHHHHhhh--hccCCCcchhHHHHHH
Q 011392 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND-RLDKRTWTYIFGACCATT--VFIPSFHNYRIWSFLG 204 (487)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~-~~~~~~~~ii~~~i~~pl--~~l~~l~~l~~~s~~~ 204 (487)
...++.+||....+..+...+.........-....+....+.+ ..+.....++...+...+ .-.+..+....+..+.
T Consensus 73 ~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~ 152 (438)
T PRK10655 73 GYAEYAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVANFGGARITGQISSVT 152 (438)
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 5667889998877655544333222222211111111111111 111111111111111111 1122333333333333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCC----CCCCcccHHHHHHHHHHHHHHhccccchHHHHhhccCc-cchhHHHHHHHHH
Q 011392 205 LGMTTYTAWYLTIAAVVHGQVEGA----SHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYIYLFATLY 279 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~i~~g~~~~~----~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~a~~~ 279 (487)
....+...+++.+........++. +......+..+..++....|+|.|-.....+-.|+||| |+.+|++..+..+
T Consensus 153 ~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~ 232 (438)
T PRK10655 153 VWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLG 232 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHH
Confidence 222222111222222211111111 11111123456677888899999999999999999999 5689999999999
Q ss_pred HHHHHHHHHHHHH
Q 011392 280 VFTLTIPSATAVY 292 (487)
Q Consensus 280 ~~~~y~~~g~~gy 292 (487)
+.++|++......
T Consensus 233 ~~~~Y~l~~~~~~ 245 (438)
T PRK10655 233 AAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988665443
No 22
>PRK10746 putative transport protein YifK; Provisional
Probab=99.41 E-value=2.8e-09 Score=111.39 Aligned_cols=347 Identities=9% Similarity=0.005 Sum_probs=172.5
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchH-HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLP-YSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (487)
++.+.++..+..+.++||+|++..| .+.+.+|- ..++..++.+++....+.-+.+.. ...+..| .+
T Consensus 10 r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~----~~~P~sG--------g~ 76 (461)
T PRK10746 10 RGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEML----FLEPVTG--------SF 76 (461)
T ss_pred ccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHH----HhcCCCC--------CH
Confidence 3477888889999999999999877 66667786 344555555555554444454443 3332222 46
Q ss_pred HHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHH---
Q 011392 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL--- 203 (487)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~--- 203 (487)
.+-+++.+|+.+..++.+...+.........+...+..+.+..+..+...+..+...++..+ -.+..+..+.+...
T Consensus 77 ~~y~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~~~~~~~~~~~l-N~~gv~~~~~~e~~~~~ 155 (461)
T PRK10746 77 AVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVALVALA-NLAAVRLYGEIEFWFAM 155 (461)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHH
Confidence 67788899999887766554443333333333333333444334333333333322222211 12222222222211
Q ss_pred -HHHHHHHHHHHHHHHHH-hcCCC---CCCCCC------CcccHHHHHHHHHHHHHHhccccchHHHHhhccCc-cchhH
Q 011392 204 -GLGMTTYTAWYLTIAAV-VHGQV---EGASHT------APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKY 271 (487)
Q Consensus 204 -~~~~~~~~~~~~~~~~i-~~g~~---~~~~~~------~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~ 271 (487)
-+...+...++.+.... ..+.. .+.++. .+.++.++..++....|+|.|-..+...-.|+||| |+.+|
T Consensus 156 ~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~ 235 (461)
T PRK10746 156 IKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRS 235 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHH
Confidence 11111111111111111 11111 111111 12346677889999999999999999999999999 56899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccc--cccc---ccCCCCchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH--
Q 011392 272 IYLFATLYVFTLTIPSATAVYWSFGDQLLN--HSNA---FSLLPKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKV-- 344 (487)
Q Consensus 272 ~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~--~~~i---l~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~~~~~-- 344 (487)
++..++....++|+...+........+..+ +++. ..+...+....+.+++..++.+.+.--.....-+.+..+
T Consensus 236 Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~ 315 (461)
T PRK10746 236 AVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAK 315 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888887777888887544433333222111 0111 111111122234444444444444333222222222111
Q ss_pred -------HccCCCcchhhhhh-hhhhHHHHHHHHHHhcCchhhHHHhhhhHHH--hHHHHhhhHHHHHHHhhhH
Q 011392 345 -------IGMHDTKSICLRAL-ARLPVVIPIWFLAIIFPFFGPINSAVGALLV--SFTVYIIPSLAHMLTYRKA 408 (487)
Q Consensus 345 -------~~~~~~~~~~~~~~-~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~--~~l~filP~l~~l~~~~~~ 408 (487)
+.+.+++....+.+ +.....++...+....|+-+.+++..-++++ ..+.++++++-+++.+|+.
T Consensus 316 ~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~ 389 (461)
T PRK10746 316 NRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAH 389 (461)
T ss_pred CCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111222222221 1111122222334445655555554443332 4788899999999987764
No 23
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.39 E-value=3.8e-09 Score=110.35 Aligned_cols=226 Identities=11% Similarity=0.050 Sum_probs=122.0
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (487)
++.+.++..+..++++||+|++..|. +.+++|- ..++..++.+++....+.-+ .|...+.+..+ .+
T Consensus 12 r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~----aEl~s~~P~aG--------g~ 78 (456)
T PRK10238 12 RGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQL----GEMVVEEPVAG--------SF 78 (456)
T ss_pred ccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHH----HHHHHhcCCCC--------CH
Confidence 34677888899999999999998885 4556664 34444444444444333333 34444433222 35
Q ss_pred HHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Q 011392 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (487)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~~ 206 (487)
.+-+++.+||....+......+.............++.+....++.+...+..+...+...+- ....+....+......
T Consensus 79 y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~lN-~~gv~~~~~~~~~~~~ 157 (456)
T PRK10238 79 SHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAIN-LTNVKVFGEMEFWFAI 157 (456)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH
Confidence 556778899988887666655544444444444444444433333333333332222221111 1222333333332222
Q ss_pred HHHHHHHHHHH---HHHhc--CCCC-CCC----C--CCcccHHHHHHHHHHHHHHhccccchHHHHhhccCcc-chhHHH
Q 011392 207 MTTYTAWYLTI---AAVVH--GQVE-GAS----H--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKYIY 273 (487)
Q Consensus 207 ~~~~~~~~~~~---~~i~~--g~~~-~~~----~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~ 273 (487)
.-+...+.+++ ..+.. +..+ ... . ..+..+..+..+++...|+|.|-......-.|+|||+ +.+|++
T Consensus 158 iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi 237 (456)
T PRK10238 158 IKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKAT 237 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHH
Confidence 21111111111 11111 1111 111 1 1133445666778889999999999999999999995 588988
Q ss_pred HHHHHHHHHHHHHH
Q 011392 274 LFATLYVFTLTIPS 287 (487)
Q Consensus 274 ~~a~~~~~~~y~~~ 287 (487)
..+.....+.|...
T Consensus 238 ~~~~~~i~~~y~~~ 251 (456)
T PRK10238 238 NQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666666543
No 24
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.39 E-value=3.7e-09 Score=110.95 Aligned_cols=233 Identities=10% Similarity=0.015 Sum_probs=123.3
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchHHH-HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLPYS-FSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (487)
+..+.++.....++.++|+|++..|-. .+.+|-...++..++.+++......-+.+. ..+.+..| .+
T Consensus 14 r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aEL----as~~P~aG--------G~ 81 (471)
T PRK11387 14 RTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGEL----SVAMPETG--------AF 81 (471)
T ss_pred hcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCCCC--------CH
Confidence 347888999999999999999988855 567775334455555555555554444444 33332222 34
Q ss_pred HHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Q 011392 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (487)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~~ 206 (487)
..-+++.+|+....+..+...+.............+..+.+..+..+...+.++...++. +.-.+..+..+........
T Consensus 82 y~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~in~~gvk~~~~~~~~~~~ 160 (471)
T PRK11387 82 HVYAARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQVPVWPWCLLFCALIF-GLNVVSTRFFAEGEFWFSL 160 (471)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHH
Confidence 567788899988766555444332222211122222122222232222222222222111 2222223333332222211
Q ss_pred HHHHHHHHHHHHH---Hh------cCCC-CCCCCC-----CcccHHHHHHHHHHHHHHhccccchHHHHhhccCcc-chh
Q 011392 207 MTTYTAWYLTIAA---VV------HGQV-EGASHT-----APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFK 270 (487)
Q Consensus 207 ~~~~~~~~~~~~~---i~------~g~~-~~~~~~-----~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~ 270 (487)
.-+...+.+++.+ +. .+.. +..+.. .+.....++.++....|+|.|-..+...-.|+|||+ +.+
T Consensus 161 ~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iP 240 (471)
T PRK11387 161 IKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIP 240 (471)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHH
Confidence 1111111111111 10 0111 111110 122344577777888999999999999999999995 589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011392 271 YIYLFATLYVFTLTIPSATAVYW 293 (487)
Q Consensus 271 ~~~~~a~~~~~~~y~~~g~~gy~ 293 (487)
|++..+..++.++|+...+....
T Consensus 241 rAi~~~~~~~~~~y~~~~~~~~~ 263 (471)
T PRK11387 241 VAIRTTIARLVIFFVGTVLVLAA 263 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhe
Confidence 99989998888889887654433
No 25
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.38 E-value=3.6e-09 Score=110.25 Aligned_cols=233 Identities=11% Similarity=0.020 Sum_probs=123.4
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (487)
++.+.++.+...++.++|+|++.+|...++.|.. .+...++.++......... .|.....+..| ...
T Consensus 8 ~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~----aEL~s~~P~aG--------G~y 74 (445)
T PRK10644 8 HKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVY----AKMSSLDPSPG--------GSY 74 (445)
T ss_pred CCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----HHHHhhCCCCC--------Chh
Confidence 3478889999999999999999999998887632 3333333333333222223 34444443322 122
Q ss_pred HHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccc-chhHHHHHHHHHhhhh--ccCCCcchhHHHHHH
Q 011392 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLD-KRTWTYIFGACCATTV--FIPSFHNYRIWSFLG 204 (487)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~-~~~~~ii~~~i~~pl~--~l~~l~~l~~~s~~~ 204 (487)
.-+++.+||....+......+..............+....+.+..+ .....++...++..+. -.+..+...++..+.
T Consensus 75 ~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~ 154 (445)
T PRK10644 75 AYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVA 154 (445)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 3478889998877655444432222222211111111122222211 1111111111211222 123334444443333
Q ss_pred HHHHHHHHHHHHHHHHh--cCC--CCCCCCCCcccHHHHHHHHHHHHHHhccccchHHHHhhccCc-cchhHHHHHHHHH
Q 011392 205 LGMTTYTAWYLTIAAVV--HGQ--VEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYIYLFATLY 279 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~i~--~g~--~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~a~~~ 279 (487)
....+.....+.+.... ++. .+..+..+...+..+..++....|+|.|-......-.|+||| |+.+|++..+..+
T Consensus 155 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i 234 (445)
T PRK10644 155 TVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLI 234 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHH
Confidence 32222111111111211 111 111111111234456677888899999999999999999999 5689999999999
Q ss_pred HHHHHHHHHHHHHH
Q 011392 280 VFTLTIPSATAVYW 293 (487)
Q Consensus 280 ~~~~y~~~g~~gy~ 293 (487)
+.++|.+..+.-..
T Consensus 235 ~~v~Y~l~~~~~~~ 248 (445)
T PRK10644 235 AAVCYVLSSTAIMG 248 (445)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988766433
No 26
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.37 E-value=9.3e-09 Score=107.85 Aligned_cols=230 Identities=11% Similarity=0.095 Sum_probs=123.9
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchH-HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLP-YSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (487)
+..+.++.....++++||+|++-.| .+++++|. ..+...++.+++......-+. |...... .+. ++
T Consensus 20 r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~a----El~s~~~----~~~----~~ 86 (469)
T PRK11049 20 RNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMG----ELLLSNL----EYK----SF 86 (469)
T ss_pred ccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHH----HHHHhcC----CCC----cH
Confidence 3477888888899999999999877 58888887 345555555555544433333 3332211 111 35
Q ss_pred HHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Q 011392 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (487)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~~ 206 (487)
.+.+++.+|+....+..+...+.............+..+.+..+..+...+..++..++. +.-.+..+..+.+..+...
T Consensus 87 ~~ya~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~~~~~~~~~~~~~~-~iN~~g~~~~~~i~~~~~~ 165 (469)
T PRK11049 87 SDFASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLSDWVASLAVVLLLL-SLNLATVKMFGEMEFWFAM 165 (469)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHH
Confidence 578899999998887666655433222222222222222232233332222222111111 1112223333333333222
Q ss_pred HHHHHHHHHHHHHH--h-cC--CCC----CCC----C--CCcccHHHHHHHHHHHHHHhccccchHHHHhhccCcc-chh
Q 011392 207 MTTYTAWYLTIAAV--V-HG--QVE----GAS----H--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFK 270 (487)
Q Consensus 207 ~~~~~~~~~~~~~i--~-~g--~~~----~~~----~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~ 270 (487)
..+...+.+++.++ . .+ ... +.+ . ..|..+..++.++....|+|.|-..+...-.|+|||+ +.+
T Consensus 166 ~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iP 245 (469)
T PRK11049 166 IKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLP 245 (469)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHH
Confidence 21111111111111 1 11 110 011 0 1133455688899999999999999999999999995 578
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011392 271 YIYLFATLYVFTLTIPSATAV 291 (487)
Q Consensus 271 ~~~~~a~~~~~~~y~~~g~~g 291 (487)
|++..+.....++|.......
T Consensus 246 rai~~~~~~~~~~y~l~~~~~ 266 (469)
T PRK11049 246 RAINSIPIRIIMFYVFALIVI 266 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888766666777777655443
No 27
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.35 E-value=9.2e-09 Score=108.01 Aligned_cols=234 Identities=10% Similarity=-0.013 Sum_probs=127.2
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchHHHHHhhchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccccccccC
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGML-SGILLQIFYGFLGSWTAYLISVLYVEYRSRKEK-ENVSFKNHVIQ 125 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~-~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~-~~~~~~~~~~~ 125 (487)
++.+.+++....+++++|+|++.+|....+.|=. ..++..++.+++......... |..++.+. .| .
T Consensus 7 ~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~a----El~s~~P~~sG--------G 74 (473)
T TIGR00905 7 KKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFA----ILATKKPELDG--------G 74 (473)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH----HHHhhCCCCCC--------C
Confidence 4578899999999999999999999988765422 223344444444444433333 44433332 22 2
Q ss_pred HHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc---ccchhHHHHHHHHH--hhhhccCCCcchhHH
Q 011392 126 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDR---LDKRTWTYIFGACC--ATTVFIPSFHNYRIW 200 (487)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~---~~~~~~~ii~~~i~--~pl~~l~~l~~l~~~ 200 (487)
..+..++.+||+...+..+............+.....+.+..+.+. .+.....+....+. .-..-.+..+..+++
T Consensus 75 ~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i 154 (473)
T TIGR00905 75 IYAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFI 154 (473)
T ss_pred hhhhHHhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3346688999998877655543322222222222222222222111 11111111111111 112223444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--cCCC--CCCC-C---CCcccHHHHHHHHHHHHHHhccccchHHHHhhccCccchhHH
Q 011392 201 SFLGLGMTTYTAWYLTIAAVV--HGQV--EGAS-H---TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYI 272 (487)
Q Consensus 201 s~~~~~~~~~~~~~~~~~~i~--~g~~--~~~~-~---~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~ 272 (487)
..+.....+...+++++..+. ++.. .+.. . .....+..+..++....|+|.|-......-.|+||+|+.+|.
T Consensus 155 ~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPra 234 (473)
T TIGR00905 155 NTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKA 234 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHH
Confidence 444433322221122222211 1111 0110 0 011234567778888999999999999999999997778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011392 273 YLFATLYVFTLTIPSATAVYW 293 (487)
Q Consensus 273 ~~~a~~~~~~~y~~~g~~gy~ 293 (487)
+..+..++.++|+........
T Consensus 235 i~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 235 TVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999887665443
No 28
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.34 E-value=3e-08 Score=103.75 Aligned_cols=229 Identities=12% Similarity=0.089 Sum_probs=125.9
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchHHH-HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLPYS-FSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (487)
++.+.++.....+++++|+|++.+|.. .+.+|- ..++..++.+++....+..+.+. ..+.+..+ ..
T Consensus 9 r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl----~s~~P~~G--------g~ 75 (457)
T PRK10580 9 RGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEM----SVHNPAAS--------SF 75 (457)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHH----HHHcCCCC--------CH
Confidence 347888999999999999999999855 566775 34566666666655554444443 33333222 34
Q ss_pred HHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Q 011392 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (487)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~~ 206 (487)
.+.+++.+||....+..+...+.............+.....+.+..+...+.+....+.. ..-.+..+....+......
T Consensus 76 y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ln~~gv~~~~~~~~~~~~ 154 (457)
T PRK10580 76 SRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIIC-AVNLMSVKVFGELEFWFSF 154 (457)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HHHHccchhHHHHHHHHHH
Confidence 456788899998877666554433332323222233222222333333333322222211 2223333434443332222
Q ss_pred HHHHHHHHHHHH----HH---hcC-CCCCCC----C--CCcccHHHHHHHHHHHHHHhccccchHHHHhhccCccc-hhH
Q 011392 207 MTTYTAWYLTIA----AV---VHG-QVEGAS----H--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKY 271 (487)
Q Consensus 207 ~~~~~~~~~~~~----~i---~~g-~~~~~~----~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~ 271 (487)
..+...+++++. .+ .++ ...+.. . ..+..+..++.++....|+|.|.......-.|+|||+| .+|
T Consensus 155 ~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPr 234 (457)
T PRK10580 155 FKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPR 234 (457)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHH
Confidence 111111111111 11 111 111111 1 11334557778888999999999999999999999965 788
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011392 272 IYLFATLYVFTLTIPSATA 290 (487)
Q Consensus 272 ~~~~a~~~~~~~y~~~g~~ 290 (487)
++..+.....++|....+.
T Consensus 235 Ai~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 235 AINSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8877777777777766433
No 29
>PRK11021 putative transporter; Provisional
Probab=99.33 E-value=1.7e-08 Score=104.06 Aligned_cols=223 Identities=8% Similarity=-0.023 Sum_probs=121.3
Q ss_pred cHHHHHHHHHHhHhhhhhcchHHHH-HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHHH
Q 011392 51 SAWDAWFSCASNQVAQVLLTLPYSF-SQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (487)
Q Consensus 51 s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 129 (487)
+.|++....+++++|+|++.+|-.. +.+|- ..++..++.+++......... |...+.+++| .....
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~a----El~s~~P~aG--------G~y~y 68 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFA----RLGRHFPHAG--------GPAHF 68 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHH----HHHHhCCCCC--------CHHHh
Confidence 5678889999999999999999554 45563 345555555555444444444 4433333222 34456
Q ss_pred HHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHH-HHHHHhhhhccCCCcchhHHHHHHHHHH
Q 011392 130 LDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYI-FGACCATTVFIPSFHNYRIWSFLGLGMT 208 (487)
Q Consensus 130 ~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii-~~~i~~pl~~l~~l~~l~~~s~~~~~~~ 208 (487)
+++.+||+.........................+......+..+...+.+. .....+-+.-.+..+..+++..+. .
T Consensus 69 ~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~---~ 145 (410)
T PRK11021 69 VGMAFGPRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGWSSWQLLLAELLTLALLWLLNLRGASSSANLQTVI---A 145 (410)
T ss_pred HHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---H
Confidence 778899998876555443321111111111111222221111111112111 111111122233333333333322 2
Q ss_pred HHHHHHHHHHHHhcCC--CCCCCC--CCcccHHHHHHHHHHHHHHhccccchHHHHhhccCc-cchhHHHHHHHHHHHHH
Q 011392 209 TYTAWYLTIAAVVHGQ--VEGASH--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYIYLFATLYVFTL 283 (487)
Q Consensus 209 ~~~~~~~~~~~i~~g~--~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~a~~~~~~~ 283 (487)
+....++.. ....+. ..+... ..+.++.+++.++....|+|.|.......-.|+||| |+.+|++..+..++.++
T Consensus 146 ~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~l 224 (410)
T PRK11021 146 LLIVALVVA-IWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLV 224 (410)
T ss_pred HHHHHHHHH-HHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHH
Confidence 111111111 111121 111111 123456778889999999999999999999999999 56899999999999999
Q ss_pred HHHHHHH
Q 011392 284 TIPSATA 290 (487)
Q Consensus 284 y~~~g~~ 290 (487)
|+...+.
T Consensus 225 Yil~~~~ 231 (410)
T PRK11021 225 YWACTVV 231 (410)
T ss_pred HHHHHHH
Confidence 9987654
No 30
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.32 E-value=1.4e-08 Score=106.86 Aligned_cols=229 Identities=10% Similarity=0.024 Sum_probs=128.1
Q ss_pred CccHHHHHHHHHHhHhhhhhcchH-HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccccccccccCH
Q 011392 49 GGSAWDAWFSCASNQVAQVLLTLP-YSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKE-KENVSFKNHVIQW 126 (487)
Q Consensus 49 ~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~-~~~~~~~~~~~~y 126 (487)
+.+.++.....++.++|+|++..| .+.+++|-...++..++.+++......-+.+ .....+ ..+ .|
T Consensus 3 ~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aE----l~s~~P~~gG--------~~ 70 (478)
T TIGR00913 3 SLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGE----MATFYPVVSG--------SF 70 (478)
T ss_pred CCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH----HHHhCCCCCC--------CH
Confidence 467788888999999999999776 6777777442344455555555555444444 333332 112 47
Q ss_pred HHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Q 011392 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (487)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~~ 206 (487)
...+++.+|+....+......+.............+..+.+..+..+...|..+...+ .-+.-.+..+..+++......
T Consensus 71 ~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~in~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 71 ATYASRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVNPAVWIAIFYVF-IVIINLFGVKGYGEAEFWFSS 149 (478)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHhcchHHHHHHHHHHH
Confidence 7788899999988776665544333333333333333333333333333343322211 112223333444444333221
Q ss_pred HHHHHHHHHHH---HHHhcCC--CCC--C------CCCCcc----cHHHHHHHHHHHHHHhccccchHHHHhhccCc-cc
Q 011392 207 MTTYTAWYLTI---AAVVHGQ--VEG--A------SHTAPT----KLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QK 268 (487)
Q Consensus 207 ~~~~~~~~~~~---~~i~~g~--~~~--~------~~~~~~----~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~ 268 (487)
.-+...+.+++ .....+. .+. . ....+. .+..+..++....|+|.|-......-.|+||| |+
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 229 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKS 229 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhH
Confidence 11111111111 1111111 110 0 001111 25567788888999999999999999999999 56
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 011392 269 FKYIYLFATLYVFTLTIPSATA 290 (487)
Q Consensus 269 ~~~~~~~a~~~~~~~y~~~g~~ 290 (487)
.+|++..+..++.++|+...+.
T Consensus 230 iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 230 IPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999986543
No 31
>PRK10836 lysine transporter; Provisional
Probab=99.31 E-value=4.1e-08 Score=103.52 Aligned_cols=236 Identities=9% Similarity=-0.003 Sum_probs=120.8
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (487)
++.+.++.....++++||+|++.+|. +.+++|-...++..++.+++....+.-+. |...+.+..| ..
T Consensus 15 r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~a----EL~s~~P~sG--------g~ 82 (489)
T PRK10836 15 RELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLG----ELAAYMPVSG--------SF 82 (489)
T ss_pred ccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCCCC--------CH
Confidence 34678889999999999999999995 77788864456666666666655544444 4444433323 23
Q ss_pred HHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhh--ccCCCcchhHHHHHH
Q 011392 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTV--FIPSFHNYRIWSFLG 204 (487)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~--~l~~l~~l~~~s~~~ 204 (487)
...+++.+|+....++.+....................+.+..+..+...+..+...+...+- -.|...+......+.
T Consensus 83 y~y~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ 162 (489)
T PRK10836 83 ATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLI 162 (489)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence 445566777777665544333221111111111111112222222222222222212111111 122222222221111
Q ss_pred HHHHHHH-HHHHHH--HHHhcCCC----CCCCCC---CcccHHHHHHHHHHHHHHhccccchHHHHhhccCc-cchhHHH
Q 011392 205 LGMTTYT-AWYLTI--AAVVHGQV----EGASHT---APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYIY 273 (487)
Q Consensus 205 ~~~~~~~-~~~~~~--~~i~~g~~----~~~~~~---~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~ 273 (487)
.+..+.. +++.++ ....++.. .+.... .+..+..++.+.....|+|.|-..+...-.|+||| |+.+|++
T Consensus 163 ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi 242 (489)
T PRK10836 163 KVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAV 242 (489)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHH
Confidence 1111111 111111 11111111 111100 11234445555566679999999999999999999 5589999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 011392 274 LFATLYVFTLTIPSATAVYWSF 295 (487)
Q Consensus 274 ~~a~~~~~~~y~~~g~~gy~~f 295 (487)
..++..+.++|+.....-....
T Consensus 243 ~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 243 RQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred HHHHHHHHHHHHHHHHHHheec
Confidence 9999999999997765443333
No 32
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.31 E-value=4.5e-09 Score=109.18 Aligned_cols=234 Identities=12% Similarity=0.010 Sum_probs=126.7
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (487)
++.+.++.+...+++++|+|++.+|...++.|-. .++..++.++.... +..++.|...+.+..+ ...
T Consensus 5 ~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~----~al~~aEL~s~~P~~G--------G~y 71 (435)
T PRK10435 5 KKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMS----LAYVYARLATKNPQQG--------GPI 71 (435)
T ss_pred CcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHH----HHHHHHHHHhhCCCCC--------Chh
Confidence 3478889999999999999999999999988753 34444444444332 2333345554443322 233
Q ss_pred HHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHH-HHHHHHHh--hhhccCCCcchhHHHHHH
Q 011392 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWT-YIFGACCA--TTVFIPSFHNYRIWSFLG 204 (487)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~-ii~~~i~~--pl~~l~~l~~l~~~s~~~ 204 (487)
+.+++ +|+.+.....+..............+...+.+..+.+........ ++...+.. -+.-.+..+..+.+..+.
T Consensus 72 ~y~~~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~ 150 (435)
T PRK10435 72 AYAGE-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIG 150 (435)
T ss_pred HHHHH-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34566 788877765544332221222222222222222222221111111 11111111 112233333344443333
Q ss_pred HHHHHHHHHHHHHHHHhcCCC----CCCCCCCcccHHHHHHHHHHHHHHhccccchHHHHhhccCc-cchhHHHHHHHHH
Q 011392 205 LGMTTYTAWYLTIAAVVHGQV----EGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYIYLFATLY 279 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~i~~g~~----~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~a~~~ 279 (487)
.+..+...+...+....+.+. ++.....+.++.++..++....|+|.|-......-.|+||| |+.+|++..+..+
T Consensus 151 ~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~i 230 (435)
T PRK10435 151 LVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGL 230 (435)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHH
Confidence 322221111111112111111 11111123456678888999999999999999999999999 5799999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 011392 280 VFTLTIPSATAVYWSF 295 (487)
Q Consensus 280 ~~~~y~~~g~~gy~~f 295 (487)
+.++|+...+......
T Consensus 231 v~ilYil~~~~~~~~~ 246 (435)
T PRK10435 231 AGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999998876654443
No 33
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.31 E-value=1.5e-08 Score=106.21 Aligned_cols=345 Identities=9% Similarity=0.026 Sum_probs=168.6
Q ss_pred CccHHHHHHHHHHhHhhhhhcchHHHHH-hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccccccccCH
Q 011392 49 GGSAWDAWFSCASNQVAQVLLTLPYSFS-QMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEK-ENVSFKNHVIQW 126 (487)
Q Consensus 49 ~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~-~~~~~~~~~~~y 126 (487)
+.+.++.+...+++++|+|++.+|.... .+|....++..++.++......... .|...+.++ ++ ..
T Consensus 2 ~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~----aeL~s~~P~~gG--------G~ 69 (468)
T TIGR03810 2 KLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSF----QNLANKKPELDG--------GV 69 (468)
T ss_pred CCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH----HHHHhhCCCCCC--------Ch
Confidence 4677889999999999999999997755 5553323344555555544443333 344433321 11 13
Q ss_pred HHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc--cchhHHHH-HHHHH--hhhhccCCCcchhHHH
Q 011392 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRL--DKRTWTYI-FGACC--ATTVFIPSFHNYRIWS 201 (487)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~--~~~~~~ii-~~~i~--~pl~~l~~l~~l~~~s 201 (487)
.+-+++.+||....+......+........+.....+...++.+.. +...+..+ ...+. +-..-.+..+..++++
T Consensus 70 y~y~~~~fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~ 149 (468)
T TIGR03810 70 YSYAKAGFGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFIN 149 (468)
T ss_pred hhhHHhHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 3457889999888776555443322222233222222222222211 11121111 11111 1112234444444444
Q ss_pred HHHHHHHHHHHHHHHHHHH--hcCCC--CC-CCC-----CCcccHHHHHHHHHHHHHHhccccchHHHHhhccCccchhH
Q 011392 202 FLGLGMTTYTAWYLTIAAV--VHGQV--EG-ASH-----TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKY 271 (487)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~i--~~g~~--~~-~~~-----~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~ 271 (487)
.+..+..+...+++++..+ .++.. ++ .+. .....+..+..++....|+|.|-.....+-.|.|++|+.+|
T Consensus 150 ~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ 229 (468)
T TIGR03810 150 TITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGK 229 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchH
Confidence 4333222211111111111 11111 00 000 01112334557788899999999998888889999889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccc---cc---ccccCCCCchHHHHHHHHHHHHHHHHHHhhh-ccHHHH----
Q 011392 272 IYLFATLYVFTLTIPSATAVYWSFGDQLLN---HS---NAFSLLPKNRWRDAAVILMLIHQFITFGFAC-TPLYFV---- 340 (487)
Q Consensus 272 ~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~---~~---~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~-~p~~~~---- 340 (487)
++..+...+.++|....+..+...+++..+ ++ ......-.+....+..+...++.+.+.--.. .+.|..
T Consensus 230 ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~a 309 (468)
T TIGR03810 230 ATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMA 309 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877665544432110 01 0111111122234455555555555443332 233332
Q ss_pred ----HHHHHccCCCcchhhhhh-hhhhHHHHHHHHHHhcC--chhhHHHhhhhHHHhHHHHhhhHHHHHHHhhhH
Q 011392 341 ----WEKVIGMHDTKSICLRAL-ARLPVVIPIWFLAIIFP--FFGPINSAVGALLVSFTVYIIPSLAHMLTYRKA 408 (487)
Q Consensus 341 ----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~lA~~vP--~~~~vl~lvGa~~~~~l~filP~l~~l~~~~~~ 408 (487)
+.+.+.+.+++....+-+ +...+..+ ..+....+ .++.+.++.+. ...+.|+++++.++++++++
T Consensus 310 rdg~lP~~f~k~~~~~tP~~al~~~~~i~~~-~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 310 KDKLMPKYFGKENANGAPTNALWLTNGLIQI-FLLTTLFSEQAYNFAISLATS--AILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred hCCCccHHHHhhCCCCCCHHHHHHHHHHHHH-HHHHHHccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc
Confidence 222222211222222222 11121111 11111122 35556555443 34688999999998887653
No 34
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.28 E-value=3.4e-09 Score=105.51 Aligned_cols=285 Identities=14% Similarity=0.128 Sum_probs=174.2
Q ss_pred ccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHHH
Q 011392 50 GSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (487)
Q Consensus 50 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 129 (487)
.|..|....+..+++|+|++.+|....+.+ --|++..++.++.......+..+..++++++ +..|.
T Consensus 2 IS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~-------------~l~~~ 67 (320)
T PF03845_consen 2 ISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRFPGK-------------TLVEI 67 (320)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHHH
Confidence 578899999999999999999999887654 1233333333333444444444333333211 68899
Q ss_pred HHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhh-ccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Q 011392 130 LDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMT 208 (487)
Q Consensus 130 ~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~-~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~~~~ 208 (487)
.++.+||+..++.......+.+......+....+.+.. +.++.+.......+.++ ....-.+.++.+.+.+.+-....
T Consensus 68 ~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP~~~i~~~~ll~-~~y~a~~G~e~i~R~~~~~~~~~ 146 (320)
T PF03845_consen 68 SEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLPETPIWVIILLFLLV-AAYAARKGIEVIARVAEILFPIF 146 (320)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999888877777777666665555555554432 22333333332222222 22333455666666544443333
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHHHHHHhccccchHHHHhhccCccchhHHHHHHHHHHHHHHHHHH
Q 011392 209 TYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSA 288 (487)
Q Consensus 209 ~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~a~~~~~~~y~~~g 288 (487)
+...+++......+.+..+.....+.++.+.+.+.-...+.|.+...+.-+...+|+|+|.+|....+..++.++|...-
T Consensus 147 ~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~ 226 (320)
T PF03845_consen 147 LILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLFII 226 (320)
T ss_pred HHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 32222222333333333333333356677888887778888988888888899999999999999999999999988888
Q ss_pred HHHHHhhccccccc--ccccc---CCCCc----hHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHccCC
Q 011392 289 TAVYWSFGDQLLNH--SNAFS---LLPKN----RWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHD 349 (487)
Q Consensus 289 ~~gy~~fG~~~~~~--~~il~---~~~~~----~~~~i~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~ 349 (487)
+.....||.+..++ -+.+. ..+-+ +...+.-.......+.+..+..+-..+.+.+.++.++
T Consensus 227 ~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~ 296 (320)
T PF03845_consen 227 FITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKD 296 (320)
T ss_pred HHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88888899764211 01111 11101 1122344455556666677777888888888886433
No 35
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.27 E-value=4.2e-08 Score=102.22 Aligned_cols=332 Identities=11% Similarity=0.060 Sum_probs=163.2
Q ss_pred HHhHhhhhhcchHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHHHHHhhhCcch
Q 011392 60 ASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYW 138 (487)
Q Consensus 60 ~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~ 138 (487)
++++||+|++..|. +.+++|. ..++..++.+++....+....+ ...+.+..+ ...+.+++.+||..
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aE----L~s~~P~~G--------g~y~y~~~~~G~~~ 70 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAE----MAVATPDTG--------SFSTYADKAIGRWA 70 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHH----HHHhCCCCC--------CHHHHHHHHcChHH
Confidence 56899999999985 8889996 3666666666666555444444 433333222 35567789999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 011392 139 KAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIA 218 (487)
Q Consensus 139 ~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~~~~~~~~~~~~~~ 218 (487)
..+......+.............+..+.+..+..+...+.++...+...+ -.+..+..+.+..+....-+...+.+++.
T Consensus 71 gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l-N~~gv~~~~~i~~~~~~~ki~~li~~ii~ 149 (446)
T PRK10197 71 GYTIGWLYWWFWVLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGS-NLLSVKNYGEFEFWLALCKVIAILAFIFL 149 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH-HHHhhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 87766555443222222222222211222222222222222222222211 12222333333222222111111111111
Q ss_pred HH--hcCCC-----CCC-CC-----CCcccHHHHHHHHHHHHHHhccccchHHHHhhccCcc-chhHHHHHHHHHHHHHH
Q 011392 219 AV--VHGQV-----EGA-SH-----TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKYIYLFATLYVFTLT 284 (487)
Q Consensus 219 ~i--~~g~~-----~~~-~~-----~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~a~~~~~~~y 284 (487)
.+ ..|.. .+. +. ..+..+..+..++....|+|.|-..+.....|+|||+ +.+|++..++..+.++|
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Y 229 (446)
T PRK10197 150 GAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFY 229 (446)
T ss_pred HHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHH
Confidence 11 12211 111 10 1134456788999999999999999999999999995 58899888888888888
Q ss_pred HHHHHHHHHhhccccccc---c---ccccCCCCchHHHHHHHHHHHHHHHHHHhhhccHHHHHH---------HHHccCC
Q 011392 285 IPSATAVYWSFGDQLLNH---S---NAFSLLPKNRWRDAAVILMLIHQFITFGFACTPLYFVWE---------KVIGMHD 349 (487)
Q Consensus 285 ~~~g~~gy~~fG~~~~~~---~---~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~~~---------~~~~~~~ 349 (487)
+...+.-......+..+. + ...+....+....+.++...++.+.+..-......+.+. +.+.+.+
T Consensus 230 il~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~ 309 (446)
T PRK10197 230 LCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKIN 309 (446)
T ss_pred HHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC
Confidence 876555332222221100 0 112222222223444555455544444333222222221 1221111
Q ss_pred Ccchhhhhh-hhhhHHHHHHHHHHhcC--chhhHHHhhhhHHHhHHHHhhhHHHHHHHhhh
Q 011392 350 TKSICLRAL-ARLPVVIPIWFLAIIFP--FFGPINSAVGALLVSFTVYIIPSLAHMLTYRK 407 (487)
Q Consensus 350 ~~~~~~~~~-~~~~~~~~~~~lA~~vP--~~~~vl~lvGa~~~~~l~filP~l~~l~~~~~ 407 (487)
++....+.+ +...+..+..++....| .++.++++.+... .+.++++++-+++++|+
T Consensus 310 ~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~~ 368 (446)
T PRK10197 310 RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRKI 368 (446)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 122222222 11112222222222223 3667777766555 48888999999998765
No 36
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.21 E-value=1.4e-08 Score=101.61 Aligned_cols=337 Identities=12% Similarity=0.124 Sum_probs=192.3
Q ss_pred ccHHHHHHHHHHhHhhhhhc-chHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHH
Q 011392 50 GSAWDAWFSCASNQVAQVLL-TLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (487)
Q Consensus 50 ~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (487)
.+..+--+.-+...||+|.+ +--.+.+.+|-- =++.-.+.|++.+.-++.+.+...+.+.. + ++.+
T Consensus 15 L~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p~~----g--------SF~~ 81 (462)
T COG1113 15 LKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANPVS----G--------SFSD 81 (462)
T ss_pred hHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCC----C--------cHHH
Confidence 34445556788899999965 666788888843 34455666777777777777764332211 1 7999
Q ss_pred HHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhh--hhccCCCcchhHH-HHHHH
Q 011392 129 VLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCAT--TVFIPSFHNYRIW-SFLGL 205 (487)
Q Consensus 129 l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~p--l~~l~~l~~l~~~-s~~~~ 205 (487)
.+++.+|++...+......+.-...+.+.+...+..+++..++.+.+.+.+....++.. +.-.|.+.++.+. +.+=+
T Consensus 82 ~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV 161 (462)
T COG1113 82 YARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKV 161 (462)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888777888888888887777766777666665544443322 3445666666654 33222
Q ss_pred HHHHHHHHHHHHH-HHhcC--C---CCCCC----CC--CcccHHHHHHHHHHHHHHhccccchHHHHhhccCccc-hhHH
Q 011392 206 GMTTYTAWYLTIA-AVVHG--Q---VEGAS----HT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYI 272 (487)
Q Consensus 206 ~~~~~~~~~~~~~-~i~~g--~---~~~~~----~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~ 272 (487)
..++. .+++.. .+..| . ..+++ +. -|..+.+++.++-+.+|||++...+=---.|-|||+| .+|+
T Consensus 162 ~aIi~--~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkA 239 (462)
T COG1113 162 AAIIA--FIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKA 239 (462)
T ss_pred HHHHH--HHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHH
Confidence 22221 111111 11111 1 11121 11 2667888999999999999999999999999999966 4565
Q ss_pred HH-----HHHHHHHHHHHHHHHHHHHhhccccccccccccCC---CCchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 011392 273 YL-----FATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLL---PKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKV 344 (487)
Q Consensus 273 ~~-----~a~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~~---~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~~~~~ 344 (487)
+. +.......+.++..+.-+-.++++. |+...-+ +-+....+.|.....+.+.+.---.+..-+++..+
T Consensus 240 in~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~---SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~l 316 (462)
T COG1113 240 INSVIWRILIFYVGSLFVILSLYPWNQIGEDG---SPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSL 316 (462)
T ss_pred HhhhhHHHHHHHHHHHHHHheeccccccCCCC---CcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHH
Confidence 53 3333333344444555555555542 3333322 21121223333333333333211122333333322
Q ss_pred Hc---------cCCCcch-hhhhhhhhhHHHHHHHHHHhcCc--hhhHHHhhhhHHHhHHHHhhhHHHHHHHhh
Q 011392 345 IG---------MHDTKSI-CLRALARLPVVIPIWFLAIIFPF--FGPINSAVGALLVSFTVYIIPSLAHMLTYR 406 (487)
Q Consensus 345 ~~---------~~~~~~~-~~~~~~~~~~~~~~~~lA~~vP~--~~~vl~lvGa~~~~~l~filP~l~~l~~~~ 406 (487)
-. +-+++.. ..-+....+..++..++....|. |+.+.+..+... .....+=.+.+++.+|
T Consensus 317 a~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~--l~vW~~I~~s~l~~rk 388 (462)
T COG1113 317 AKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGL--LFVWLMILLSQLKLRK 388 (462)
T ss_pred hhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 11 1112222 23344566667778888888993 555555544433 3444455667777766
No 37
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.21 E-value=2.8e-08 Score=111.29 Aligned_cols=225 Identities=12% Similarity=0.044 Sum_probs=122.3
Q ss_pred ccHHHHHHHH-HHhHhhhhhc-chHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhccccccccccCH
Q 011392 50 GSAWDAWFSC-ASNQVAQVLL-TLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSR-KEKENVSFKNHVIQW 126 (487)
Q Consensus 50 ~s~~~a~~~l-~~~~iG~GiL-~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~-~~~~~~~~~~~~~~y 126 (487)
-+.+++++.- +.+++|+|++ .+++...++|...+++.+++.++++..++.-+. +...+ ..+.|= -
T Consensus 78 lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~s----eiaTng~p~aGG--------~ 145 (953)
T TIGR00930 78 FGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMS----AIATNGVVKGGG--------A 145 (953)
T ss_pred cceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCccH--------H
Confidence 3444444444 8899999998 555888899988788888888888877754443 33333 211121 1
Q ss_pred HHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc----------ccchhHHHHHHHHHhhhhccCCCcc
Q 011392 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDR----------LDKRTWTYIFGACCATTVFIPSFHN 196 (487)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~----------~~~~~~~ii~~~i~~pl~~l~~l~~ 196 (487)
....++.+|+.....+.++..+.....+..|.+..++.+..+... .+.+.+..+..+++..+.+ ..
T Consensus 146 Y~yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~----~G 221 (953)
T TIGR00930 146 YYLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISF----AG 221 (953)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHH----hh
Confidence 235677889877655444433333333445544444433222110 0112222222222222222 23
Q ss_pred hhHHHHHHHHHHHH---HHHHHHHHHHhcCC-CC--C--------CCC----CCcccHHHHHHHHHHHHHHhccccchHH
Q 011392 197 YRIWSFLGLGMTTY---TAWYLTIAAVVHGQ-VE--G--------ASH----TAPTKLVLYFTGATNILYTFGGHAVTVE 258 (487)
Q Consensus 197 l~~~s~~~~~~~~~---~~~~~~~~~i~~g~-~~--~--------~~~----~~~~~~~~~~~~~~~~~faf~~~~~i~~ 258 (487)
.++.+.+..+.++. ..+.+++.++.... .+ . ... ..+.....++..++++.+||.|......
T Consensus 222 vk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan 301 (953)
T TIGR00930 222 MEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGAN 301 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433332221 11111111111110 00 0 000 0011112366778888889999988999
Q ss_pred HHhhccCc-cchhHHHHHHHHHHHHHHHHHHHH
Q 011392 259 IMHAMWKP-QKFKYIYLFATLYVFTLTIPSATA 290 (487)
Q Consensus 259 i~~~m~~p-~~~~~~~~~a~~~~~~~y~~~g~~ 290 (487)
+-.|+|+| +..++.+..+..+++++|+++.+.
T Consensus 302 ~sgElKnP~r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 302 ISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHhccChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 568999999999999999998753
No 38
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.20 E-value=2.4e-08 Score=106.62 Aligned_cols=343 Identities=13% Similarity=0.096 Sum_probs=171.3
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchHHHH--HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccC
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLPYSF--SQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQ 125 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP~af--~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 125 (487)
+..+.++.+..-++.++|+|++.+|-.. +.+|-. .++..++.++.+... ..++.|...+.++.|-.|
T Consensus 28 r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~----al~yaElas~~P~sGg~Y------ 96 (557)
T TIGR00906 28 RCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLS----GFCYAEFGARVPKAGSAY------ 96 (557)
T ss_pred hcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHH----HHHHHHHHHhCCCCCcce------
Confidence 4478899999999999999999999643 357743 344444444444433 334445555554434222
Q ss_pred HHHHHHhhhCcchhhHHHHHHHHHHHHHHH-------HHHHH-hhhhhhh-------cc-ccccchh-HHHHHHHHHhhh
Q 011392 126 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSV-------IQLIA-CASNIYY-------IN-DRLDKRT-WTYIFGACCATT 188 (487)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~-------~~li~-~~~~~~~-------~~-~~~~~~~-~~ii~~~i~~pl 188 (487)
.-.++.+|+...++..+...+....... .|+.. ....... +. +...... ...+...+++-+
T Consensus 97 --~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ 174 (557)
T TIGR00906 97 --LYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAV 174 (557)
T ss_pred --eeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHH
Confidence 2345668988877765544443222111 11111 0000000 00 0010111 111111111112
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--------CCCcccHHHHHHHHHHHHHHhccccchHHHH
Q 011392 189 VFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGAS--------HTAPTKLVLYFTGATNILYTFGGHAVTVEIM 260 (487)
Q Consensus 189 ~~l~~l~~l~~~s~~~~~~~~~~~~~~~~~~i~~g~~~~~~--------~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~ 260 (487)
...+..+..++++.+.....+....++++.+..+++.++.. ...|.++.+++.+.....|+|.|-..+...-
T Consensus 175 ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~a 254 (557)
T TIGR00906 175 LLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTG 254 (557)
T ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhH
Confidence 23445555655555444333322222233333333222211 1123455678888999999999999999999
Q ss_pred hhccCcc-chhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-ccc---cccCCCCchHHHHHHHHHHHHHHHHHHhhhc
Q 011392 261 HAMWKPQ-KFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLN-HSN---AFSLLPKNRWRDAAVILMLIHQFITFGFACT 335 (487)
Q Consensus 261 ~~m~~p~-~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~-~~~---il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~ 335 (487)
.|+|||+ +.++.+..++.++.++|..+.+.-....+.+..+ ++. .+.....+....+..+.....+..+......
T Consensus 255 eE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~ 334 (557)
T TIGR00906 255 EEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMF 334 (557)
T ss_pred HhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 5899999999999999998766543332222111 111 1222222222333444444444443333222
Q ss_pred cHHHHHHH---------HHcc-CCCcchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHHHHHHh
Q 011392 336 PLYFVWEK---------VIGM-HDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTY 405 (487)
Q Consensus 336 p~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~~l~~~ 405 (487)
..-+.+.. .+.+ |++.+...+.. ....+++.+++... +++.+.++.. .+..+.|.++++..+.++
T Consensus 335 ~~sRil~amarDGlLP~~fakv~~r~~tP~~Ai--l~~~iv~~il~~~~-~~~~l~~l~s--ig~ll~y~lv~~~~l~lR 409 (557)
T TIGR00906 335 PLPRVIYAMARDGLLFKWLAQINSKTKTPINAT--VVSGAIAALMAFLF-DLKALVDLLS--IGTLLAYSLVAACVLILR 409 (557)
T ss_pred HHHHHHHHHHcCCCccHHHhccCCCCCCcHHHH--HHHHHHHHHHHHHc-CHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 22222221 1211 22212222221 12222333444433 4666666542 334788999988887776
Q ss_pred hhH
Q 011392 406 RKA 408 (487)
Q Consensus 406 ~~~ 408 (487)
+++
T Consensus 410 ~~~ 412 (557)
T TIGR00906 410 YQP 412 (557)
T ss_pred ccc
Confidence 543
No 39
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.16 E-value=2.2e-07 Score=96.88 Aligned_cols=228 Identities=11% Similarity=0.010 Sum_probs=122.1
Q ss_pred CccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHH
Q 011392 49 GGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (487)
Q Consensus 49 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (487)
+.+.++.+...++.++|....+.+.++++.|+..-++..++.+++....+... .|...+.+..+ ....
T Consensus 8 ~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~----aEl~s~~P~~G--------g~y~ 75 (442)
T TIGR00908 8 TLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSL----AELSTMIPTAG--------GGYG 75 (442)
T ss_pred cCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCCC--------CHHH
Confidence 46778877888888888555566889999998633344444444333333333 34444443322 2445
Q ss_pred HHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Q 011392 129 VLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMT 208 (487)
Q Consensus 129 l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~~~~ 208 (487)
.+++.+||....+......+........+....++.+....+..+...+.++...++.. .-.+..+..+++.....+..
T Consensus 76 ~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~~~~~~~~~~~~~~~-ln~~g~~~~~~i~~~~~~~~ 154 (442)
T TIGR00908 76 FARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGPGWLAALVFYIVFIG-INILGVGEAAKLEFVVTAVA 154 (442)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHH
Confidence 67889999888776655544333333344444444433333333333222222222221 11222333333333222211
Q ss_pred HHHHHHHHHHHHhcCCCCC--------CCCCCcccHHHHHHHHHHHHHHhccccchHHHHhhccCc-cchhHHHHHHHHH
Q 011392 209 TYTAWYLTIAAVVHGQVEG--------ASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYIYLFATLY 279 (487)
Q Consensus 209 ~~~~~~~~~~~i~~g~~~~--------~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~a~~~ 279 (487)
+....+.+.....+.+..+ .+...+..+..++.++....|+|.|.......-.|+||| |+.+|++..+..+
T Consensus 155 ~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~ 234 (442)
T TIGR00908 155 IIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILT 234 (442)
T ss_pred HHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHH
Confidence 1111111111111111000 011112344567788888899999999999999999999 5689999888888
Q ss_pred HHHHHHHHHH
Q 011392 280 VFTLTIPSAT 289 (487)
Q Consensus 280 ~~~~y~~~g~ 289 (487)
+.++|+..-.
T Consensus 235 ~~~~~~~~~~ 244 (442)
T TIGR00908 235 LLALAAGILV 244 (442)
T ss_pred HHHHHHHHHH
Confidence 8888876533
No 40
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.15 E-value=5.9e-08 Score=100.56 Aligned_cols=233 Identities=14% Similarity=0.102 Sum_probs=134.3
Q ss_pred cHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhccccccccccCHHHH
Q 011392 51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLG-SWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (487)
Q Consensus 51 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls-~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 129 (487)
+.++++...++.++|+|+...| ...+.|.. .++..++.+.+. ..... ++.|+.++.++++ .....
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~----~~~el~~~~p~~G--------G~y~~ 67 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIAL----SYAELSSAYPSAG--------GIYVW 67 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHH----HHHHHHTTTTSST--------THHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHH----HHHHHhccCCCcC--------eeeeh
Confidence 5688889999999999999999 77777764 444444433333 22222 2235544443333 35567
Q ss_pred HHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhh-ccccccch--hHHHHHH--HHHhhhhccCCCcchhHHHHHH
Q 011392 130 LDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-INDRLDKR--TWTYIFG--ACCATTVFIPSFHNYRIWSFLG 204 (487)
Q Consensus 130 ~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~-~~~~~~~~--~~~ii~~--~i~~pl~~l~~l~~l~~~s~~~ 204 (487)
.++.+||+...+......+........+.....+.+.. +.++.+.. ...++.. .+.....-.+..+..+++....
T Consensus 68 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~ 147 (426)
T PF13520_consen 68 VSRAFGPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNIL 147 (426)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hhhcccccchhcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhh
Confidence 78889999888766666554444443444444444332 22232221 1111111 1112222234445555554444
Q ss_pred HHHHH-HHHHHHHHHHHhcCCCCC-------CCCCCcccHHHHHHHHHHHHHHhccccchHHHHhhccCccchhHHHHHH
Q 011392 205 LGMTT-YTAWYLTIAAVVHGQVEG-------ASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFA 276 (487)
Q Consensus 205 ~~~~~-~~~~~~~~~~i~~g~~~~-------~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~a 276 (487)
....+ ....++++..+.....+. .+...+..+..++.+++..+|+|.|-.....+.+|+|+ |+.+|++..+
T Consensus 148 ~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~ 226 (426)
T PF13520_consen 148 TVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIIS 226 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHH
T ss_pred hhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccc
Confidence 33333 222223333333221110 11112223335678889999999999999999999998 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 011392 277 TLYVFTLTIPSATAVYWSFGDQ 298 (487)
Q Consensus 277 ~~~~~~~y~~~g~~gy~~fG~~ 298 (487)
..++.++|....+.-....+++
T Consensus 227 ~~~~~i~y~l~~~~~~~~~~~~ 248 (426)
T PF13520_consen 227 IIIVAIIYILFSIALLGALPDD 248 (426)
T ss_dssp HHHHHHHHHHHHHHHHTTSTHC
T ss_pred hhHHHHHHhhhhheeeecccch
Confidence 9999999999877766665554
No 41
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.09 E-value=1.2e-08 Score=103.56 Aligned_cols=346 Identities=10% Similarity=0.058 Sum_probs=193.8
Q ss_pred CccHHHHHHHHHHhHhhhhhcchHHHHHhhc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCH
Q 011392 49 GGSAWDAWFSCASNQVAQVLLTLPYSFSQMG--MLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (487)
Q Consensus 49 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G--~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (487)
+.+.+.++..+++.++|+|++..|-...+.+ ....++..++.++++..... |+.|.....++.|-| |
T Consensus 13 kigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~gal----cyaELGT~ipksGgd-------~ 81 (479)
T KOG1287|consen 13 KIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGAL----CYAELGTSIPKSGGD-------Y 81 (479)
T ss_pred eeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHH----HHHHHhccccCCCcc-------h
Confidence 3566666778999999999999997776444 44445555566666665532 344555444333322 2
Q ss_pred HHHHHhhhCcchhhHHHHHHHHHHHHHH-HHHHHHhhhh-hhhccc-cccchhHHHHHHHHHhhhhccCCCcchhHHHHH
Q 011392 127 FEVLDGLLGPYWKAVGLAFNCTFLLFGS-VIQLIACASN-IYYIND-RLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 203 (487)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~-~~~li~~~~~-~~~~~~-~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~ 203 (487)
. -..++||+.......+.-++...... ..+-+++++. +..+.+ ....+...-..+.+++-+....|..++++.+.+
T Consensus 82 a-yi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~v 160 (479)
T KOG1287|consen 82 A-YISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWATRV 160 (479)
T ss_pred h-hHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 2 23567899887765555555444444 4555555554 333222 222333333344444444445566777776665
Q ss_pred HHHHHH---HHHHHHHHHHHh---cCCCCCCCC----CCcccHHHHHHHHHHHHHHhccccchHHHHhhccCc-cchhHH
Q 011392 204 GLGMTT---YTAWYLTIAAVV---HGQVEGASH----TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYI 272 (487)
Q Consensus 204 ~~~~~~---~~~~~~~~~~i~---~g~~~~~~~----~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~ 272 (487)
-.+.+. ....++++.++. .|..++.+. ....+..+.-.++-.-.|||.|=...=.+-.|+||| |.++++
T Consensus 161 q~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~A 240 (479)
T KOG1287|consen 161 QIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRA 240 (479)
T ss_pred HHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchHH
Confidence 555443 222223333333 333332221 112344456677777799999988888888999999 568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccccc-CCCC---chHHHHHHHHHHHHHHHHHHhhhccH-HHHHH-----
Q 011392 273 YLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFS-LLPK---NRWRDAAVILMLIHQFITFGFACTPL-YFVWE----- 342 (487)
Q Consensus 273 ~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~-~~~~---~~~~~i~~~~~~i~~~~s~pl~~~p~-~~~~~----- 342 (487)
+..++.+++++|+.+=+..+.+--.+...+++... .+.+ +.+..++-+...++.+.+.--.++.. |....
T Consensus 241 i~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG 320 (479)
T KOG1287|consen 241 ILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREG 320 (479)
T ss_pred HHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHcc
Confidence 99999999999998766554333222111111111 0111 22233444444444444443333222 22211
Q ss_pred ---HHHc-cCCCcchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHHHHHHhhhHh
Q 011392 343 ---KVIG-MHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKAS 409 (487)
Q Consensus 343 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~~l~~~~~~~ 409 (487)
+.+. +|.++ ...+. .+.......++...+.+++.+++.++=.-.....+.+=+++|++.++++.
T Consensus 321 ~LP~~~s~i~~~~-~TP~~--allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 321 HLPAFFSMISVRR-FTPRP--ALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL 388 (479)
T ss_pred CccHHHHhhcCCC-CCChH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 1111 11111 11121 23344445555666678999999998888888888888888888776653
No 42
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.06 E-value=2.9e-07 Score=97.48 Aligned_cols=237 Identities=11% Similarity=0.079 Sum_probs=124.5
Q ss_pred eecCccHHHHHHHHHHhHhhhhhcchHHH-HHhhchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 011392 46 LWHGGSAWDAWFSCASNQVAQVLLTLPYS-FSQMGMLSGI--LLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNH 122 (487)
Q Consensus 46 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~--i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~ 122 (487)
..++.+.++.+...+++++|+|++..|.. .+++|-. |. +..++.+++......... |.....++.|
T Consensus 40 l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~-g~~~~~~ii~~i~~~~~al~~a----ELas~~P~sG------ 108 (501)
T TIGR00911 40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSV-GLALIMWAVCGIFSIVGALVYA----ELGTTIPKSG------ 108 (501)
T ss_pred cCccccHhHhhHhheeceEEeeEeecHHHHHhhCCCh-HHHHHHHHHHHHHHHHHHHHHH----HHHhhcCCCC------
Confidence 34457888888999999999999999865 5566743 33 333444444444333343 4433333222
Q ss_pred ccCHHHHHHhhhCcchhhHHHHHHHHHH-HHHHHHHHHHhhhhh-hhcccc--ccchhHHHHHHHHH--hhhhccCCCcc
Q 011392 123 VIQWFEVLDGLLGPYWKAVGLAFNCTFL-LFGSVIQLIACASNI-YYINDR--LDKRTWTYIFGACC--ATTVFIPSFHN 196 (487)
Q Consensus 123 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~-~g~~~~~li~~~~~~-~~~~~~--~~~~~~~ii~~~i~--~pl~~l~~l~~ 196 (487)
......++.+||....+..+...... .+.........++.. ..+.+. .+.....++...+. .-+.-.+..+.
T Consensus 109 --G~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~ 186 (501)
T TIGR00911 109 --GEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKW 186 (501)
T ss_pred --chhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 23344567899988776554332211 111112212222221 111111 11111111111111 11222333444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---hcCCCCCC--C--CC-CcccHHHHHHHHHHHHHHhccccchHHHHhhccCc-c
Q 011392 197 YRIWSFLGLGMTTYTAWYLTIAAV---VHGQVEGA--S--HT-APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-Q 267 (487)
Q Consensus 197 l~~~s~~~~~~~~~~~~~~~~~~i---~~g~~~~~--~--~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~ 267 (487)
..++..+.....+...+.+++.++ ..+..++. + .. ...+..++..++....|+|.|-........|+||| |
T Consensus 187 ~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r 266 (501)
T TIGR00911 187 ATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYR 266 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchh
Confidence 444444333322222112222222 12221111 1 11 11235567778889999999999999999999999 5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011392 268 KFKYIYLFATLYVFTLTIPSATAVYWSF 295 (487)
Q Consensus 268 ~~~~~~~~a~~~~~~~y~~~g~~gy~~f 295 (487)
+.+|++..+..++.++|++..+.-....
T Consensus 267 ~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 267 TLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999998865544333
No 43
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.99 E-value=1.3e-06 Score=89.37 Aligned_cols=223 Identities=11% Similarity=0.023 Sum_probs=142.0
Q ss_pred ccHHHHHHHHHHhHhhhhhc-chHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHH
Q 011392 50 GSAWDAWFSCASNQVAQVLL-TLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (487)
Q Consensus 50 ~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (487)
.....-.+.-+...||+|.+ +.-.+.+++|-..-++..+++|.+.+..+.-+.++...++ .. + ++..
T Consensus 46 LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-~s---G--------sF~~ 113 (541)
T COG0833 46 LKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-VS---G--------SFST 113 (541)
T ss_pred hhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CC---C--------chhh
Confidence 44455567788999999987 8889999999998888888888887777777887765554 11 1 4666
Q ss_pred HHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccc-cccchhHHHHHHHHHhhh--hccCCCcchhHH-HHHH
Q 011392 129 VLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND-RLDKRTWTYIFGACCATT--VFIPSFHNYRIW-SFLG 204 (487)
Q Consensus 129 l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~-~~~~~~~~ii~~~i~~pl--~~l~~l~~l~~~-s~~~ 204 (487)
.+.+..++-....+....++.-....-..++.++..+++..+ ..+...|..++.++++.+ .-.|.+....+. |.+=
T Consensus 114 ya~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iK 193 (541)
T COG0833 114 YATRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIK 193 (541)
T ss_pred hhhhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHH
Confidence 777776766655544433333333334667777777777653 347888888777666554 346766666653 4443
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC-----CCCC-----CcccHHHHHHHHHHHHHHhccccchHHHHhhccCccc-hhHHH
Q 011392 205 LGMTTYTAWYLTIAAVVHGQVEG-----ASHT-----APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIY 273 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~i~~g~~~~-----~~~~-----~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~~ 273 (487)
+++++...++- ..+..|..++ ..++ -+.++.++...+-+..|||.|..++----.|-++|+| .+|++
T Consensus 194 V~~ii~Fii~g--ii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAi 271 (541)
T COG0833 194 VLTIIGFIILG--IIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAI 271 (541)
T ss_pred HHHHHHHHHHH--HHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHH
Confidence 33333221111 1111221111 1111 1345677778888889999999999888899999955 67777
Q ss_pred HHHHHHHHHHHHH
Q 011392 274 LFATLYVFTLTIP 286 (487)
Q Consensus 274 ~~a~~~~~~~y~~ 286 (487)
...+.=..++|+.
T Consensus 272 k~vfwRIl~FYi~ 284 (541)
T COG0833 272 KQVFWRILLFYIL 284 (541)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655666654
No 44
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.97 E-value=1.3e-05 Score=84.37 Aligned_cols=59 Identities=10% Similarity=-0.052 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhccccchHHHHhhccCc-cchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011392 238 LYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYIYLFATLYVFTLTIPSATAVYWSFG 296 (487)
Q Consensus 238 ~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG 296 (487)
.+..+.....|+|.|-.....+-.|+||| |+.+|.+..+..+..++|.+.-+......+
T Consensus 214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 214 AFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 45556666789999999999999999999 557999988888877766555444333333
No 45
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.94 E-value=1.4e-06 Score=90.85 Aligned_cols=231 Identities=10% Similarity=0.043 Sum_probs=119.7
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchHHHH-HhhchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccC
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLPYSF-SQMGMLS-GILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQ 125 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~~-g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 125 (487)
+..+.++.+...++.++|+|++..|... +..|-.. .++..++.+++......... |.....+++|-.| .
T Consensus 8 r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~a----El~s~~P~~GG~y-----~ 78 (445)
T PRK11357 8 RKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYA----ELSTAYPENGADY-----V 78 (445)
T ss_pred ccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH----HHHhhcCCCCCce-----e
Confidence 3478888989999999999999999764 4556332 33344444444443333333 4443333323222 2
Q ss_pred HHHHHHhhhCcchhhHHHHHHHH-HHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhh--hccCCCcchhHHHH
Q 011392 126 WFEVLDGLLGPYWKAVGLAFNCT-FLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATT--VFIPSFHNYRIWSF 202 (487)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~~-~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl--~~l~~l~~l~~~s~ 202 (487)
-.++.+||....+....... ........+....++.+.+..+ .+...+..+...+...+ .-.+..+...++..
T Consensus 79 ---y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~-~~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~ 154 (445)
T PRK11357 79 ---YLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP-IDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQT 154 (445)
T ss_pred ---eHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34577898877665544321 1111111222222222222111 11111111111111111 22333343334433
Q ss_pred HHHHHHHHHHHHHHHHHH--hcCC-CC-CCCC--CCcccHHHHHHHHHHHHHHhccccchHHHHhhccCcc-chhHHHHH
Q 011392 203 LGLGMTTYTAWYLTIAAV--VHGQ-VE-GASH--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKYIYLF 275 (487)
Q Consensus 203 ~~~~~~~~~~~~~~~~~i--~~g~-~~-~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~ 275 (487)
+.....+...+++++.++ .++. .. +.+. ....++..++.++....|+|.|-........|+|||+ +.+|++..
T Consensus 155 ~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~ 234 (445)
T PRK11357 155 LITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIG 234 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHH
Confidence 333222221111222222 1221 11 1111 1111245677888899999999999999999999995 57999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 011392 276 ATLYVFTLTIPSATAV 291 (487)
Q Consensus 276 a~~~~~~~y~~~g~~g 291 (487)
++.++.++|+......
T Consensus 235 ~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 235 SCLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998876543
No 46
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.85 E-value=1.5e-05 Score=83.44 Aligned_cols=235 Identities=13% Similarity=0.065 Sum_probs=126.8
Q ss_pred ccHHH-HHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHH
Q 011392 50 GSAWD-AWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (487)
Q Consensus 50 ~s~~~-a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (487)
.+.++ .......+++|.|++.+|......+ ....+..++.+++......... |..++.++.| .+.+
T Consensus 14 l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~----el~~~~p~~G--------G~y~ 80 (466)
T COG0531 14 LGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYA----ELSSAIPSAG--------GAYA 80 (466)
T ss_pred cchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCC--------Ceee
Confidence 45665 6777888899999999998888765 2222222333333333333333 3333332222 2445
Q ss_pred HHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc---c--cchhHHHHHHHHHhh--hhccCCCcchhHHH
Q 011392 129 VLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDR---L--DKRTWTYIFGACCAT--TVFIPSFHNYRIWS 201 (487)
Q Consensus 129 l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~---~--~~~~~~ii~~~i~~p--l~~l~~l~~l~~~s 201 (487)
..++.+||+..........+..............+.+..+.+. . +...+.++..++... +.-.+..+...++.
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~ 160 (466)
T COG0531 81 YAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKIN 160 (466)
T ss_pred ehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6788899887765555544433333333332322222222111 1 112222222222222 22233344444443
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC--C-CCC-C-CcccHHHHHHHHHHHHHHhccccchHHHHhhccCc-cchhHHHHH
Q 011392 202 FLGLGMTTYTAWYLTIAAVVHGQVE--G-ASH-T-APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYIYLF 275 (487)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~i~~g~~~--~-~~~-~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~ 275 (487)
.+..+..+...+.+.+..+...... + ... . .......+..++....++|.|-......-+|+||| |+.+|.+..
T Consensus 161 ~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~ 240 (466)
T COG0531 161 SIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIIL 240 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHH
Confidence 3333333322222223323222111 1 111 0 11233457788888899999999999999999999 667999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 011392 276 ATLYVFTLTIPSATAVYWSFGD 297 (487)
Q Consensus 276 a~~~~~~~y~~~g~~gy~~fG~ 297 (487)
++.++.++|....+......++
T Consensus 241 ~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 241 SLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHHHHhCccH
Confidence 9999999999888777766665
No 47
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.80 E-value=6.4e-05 Score=79.51 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhccccchHHHHhhccCc-cchhHHHHHHHHHHHHHHHHHHHH
Q 011392 238 LYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYIYLFATLYVFTLTIPSATA 290 (487)
Q Consensus 238 ~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~a~~~~~~~y~~~g~~ 290 (487)
.++.++....|+|.|.........|+||| |+.+|++..+...+.++|....+.
T Consensus 212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~ 265 (496)
T PRK15238 212 AVLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFL 265 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 46666777899999999999999999999 568999999999999999876443
No 48
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.78 E-value=6.7e-08 Score=85.71 Aligned_cols=105 Identities=17% Similarity=0.150 Sum_probs=75.9
Q ss_pred HHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhhhhc-ccc------
Q 011392 55 AWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLY---------VEYRSRKEKE-NVS------ 118 (487)
Q Consensus 55 a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~---------~~~~~~~~~~-~~~------ 118 (487)
....+.|-++|+|.|+||.||+.+||++++.++.+.+++++.+...+.+.+ ++..+.+|.+ ..+
T Consensus 17 gllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~ 96 (319)
T KOG3832|consen 17 GLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDD 96 (319)
T ss_pred hHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCC
Confidence 346788999999999999999999999999999999999988876654432 1111111111 000
Q ss_pred -------ccc---------------------cccCHHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHH
Q 011392 119 -------FKN---------------------HVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLI 159 (487)
Q Consensus 119 -------~~~---------------------~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li 159 (487)
|++ +.+..+|++...|.|.+..+..+++++|++|...+|-.
T Consensus 97 dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaa 165 (319)
T KOG3832|consen 97 DVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAA 165 (319)
T ss_pred cEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhh
Confidence 000 12256777778888988888999999999999877743
No 49
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.62 E-value=0.00023 Score=75.00 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhccccchHHHHhhccCc-cchhHHHHHHHHHHHHHHHHH
Q 011392 238 LYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYIYLFATLYVFTLTIPS 287 (487)
Q Consensus 238 ~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~a~~~~~~~y~~~ 287 (487)
.+..++....|+|.|-......-.|+||| |+.+|++..+..+..+++.+.
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~ 268 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCF 268 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHH
Confidence 34555556779999999999999999999 557998888887766554433
No 50
>PRK11375 allantoin permease; Provisional
Probab=98.62 E-value=4.2e-05 Score=80.29 Aligned_cols=265 Identities=10% Similarity=-0.036 Sum_probs=123.3
Q ss_pred CHHHHHHhhhCcchhhHHHHHHH-HHHHHHHHHHHHHhhhhhh----hccc-------c-----cc--chhHHHHHHHHH
Q 011392 125 QWFEVLDGLLGPYWKAVGLAFNC-TFLLFGSVIQLIACASNIY----YIND-------R-----LD--KRTWTYIFGACC 185 (487)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~-~~~~g~~~~~li~~~~~~~----~~~~-------~-----~~--~~~~~ii~~~i~ 185 (487)
++.-+.|..||++|.++..++.. +..++-...+....++.+. .+.+ . .+ ...+.+++.++.
T Consensus 90 ~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~ 169 (484)
T PRK11375 90 PFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVN 169 (484)
T ss_pred ChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHH
Confidence 67789999999999776554442 2222322222222222221 1100 0 11 112222344455
Q ss_pred hhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCC------CCcccHHHHHHHHHHHHHHhc-cccchH
Q 011392 186 ATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVH-GQVEGASH------TAPTKLVLYFTGATNILYTFG-GHAVTV 257 (487)
Q Consensus 186 ~pl~~l~~l~~l~~~s~~~~~~~~~~~~~~~~~~i~~-g~~~~~~~------~~~~~~~~~~~~~~~~~faf~-~~~~i~ 257 (487)
.++.+ ...+.++++..++...+....+.+.+..+.+ |..+-.+. ........+..++...+=++. .-.+.|
T Consensus 170 ~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~ 248 (484)
T PRK11375 170 VGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSAS 248 (484)
T ss_pred HHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHcccc
Confidence 55554 4457777777766665543322233333322 21111111 011112334444433333444 345889
Q ss_pred HHHhhccCccchhHHHHHHHHHHHHHHHHHHHHH----HHhhccccccccccccCCCCchHHHHHHHHHHHHHHHH-HHh
Q 011392 258 EIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAV----YWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQFIT-FGF 332 (487)
Q Consensus 258 ~i~~~m~~p~~~~~~~~~a~~~~~~~y~~~g~~g----y~~fG~~~~~~~~il~~~~~~~~~~i~~~~~~i~~~~s-~pl 332 (487)
+.-|..|++++-.+....+..+...+...+|+.. ...||...-|..+++..+.+.....++-+...++.+.+ ...
T Consensus 249 D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~~~~~~~a~l~~v~a~~~tN~~~ 328 (484)
T PRK11375 249 DFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTISTNATG 328 (484)
T ss_pred chhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999887766655556655555544444433 45667654322233333322222233444445555554 334
Q ss_pred hhccHHHHHHHHHccCCCcchhhhhhhhhhHHHHHHHHHHh--cCc---hhhHHHhhhhHHHhHHHHh
Q 011392 333 ACTPLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAII--FPF---FGPINSAVGALLVSFTVYI 395 (487)
Q Consensus 333 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~--vP~---~~~vl~lvGa~~~~~l~fi 395 (487)
+..|.-..+..++.+.- ++. |.. .+..++..+++.. +.+ |..++++.|++.+.....+
T Consensus 329 N~ys~~~~l~~l~pk~i--~~~-~~~--~i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gIm 391 (484)
T PRK11375 329 NIIPAGYQIAALAPTKL--TYK-NGV--LIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVM 391 (484)
T ss_pred hcccHHHHHHHhCcCcc--chh-hHH--HHHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777775321 111 211 1111112222211 122 6777777777765555444
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.62 E-value=0.00011 Score=77.78 Aligned_cols=50 Identities=6% Similarity=0.149 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhccccchHHHHhhccCc-cchhHHHHHHHHHHHHHHHHHHH
Q 011392 240 FTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYIYLFATLYVFTLTIPSAT 289 (487)
Q Consensus 240 ~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~a~~~~~~~y~~~g~ 289 (487)
...+....|+|.|-......-+|+||| |+++|++..+..++.++|.+..+
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 334445689999999999999999999 56899999998888888875443
No 52
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.59 E-value=0.00016 Score=73.67 Aligned_cols=258 Identities=12% Similarity=0.042 Sum_probs=141.4
Q ss_pred HHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Q 011392 129 VLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMT 208 (487)
Q Consensus 129 l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~~~~ 208 (487)
+++..||.++.++..+.+.+.+.|-.....+.+++..... +..+...++++..+++....... .+.++.++..+....
T Consensus 86 ~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~~~~~~~~ili~g~l~~l~~ifG-~r~l~~l~~~a~~~~ 163 (442)
T COG1457 86 LSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-TGLPVWAGILIIGVLMTLVTIFG-YRALHKLERIAVPLL 163 (442)
T ss_pred eecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-CCCcHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHH
Confidence 6788899999999999999999998888888887763332 45566667776666665555432 244444555444443
Q ss_pred HHHHHHHHHHHHh-cCCCCCCCCCCcccHHHHHHHHHHHHHHh-ccccchHHHHhhccCcc--chhHHHHHHHHHHHHHH
Q 011392 209 TYTAWYLTIAAVV-HGQVEGASHTAPTKLVLYFTGATNILYTF-GGHAVTVEIMHAMWKPQ--KFKYIYLFATLYVFTLT 284 (487)
Q Consensus 209 ~~~~~~~~~~~i~-~g~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i~~i~~~m~~p~--~~~~~~~~a~~~~~~~y 284 (487)
+....+.+..... ++.........+.+..++..+++..+-.+ ..-....+..+.+|+|+ |.-.....+.......-
T Consensus 164 ~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~ 243 (442)
T COG1457 164 LLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFM 243 (442)
T ss_pred HHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 3322233333333 23222222233555556655555433222 23467788888898887 44444455666666667
Q ss_pred HHHHHHHHHhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHccCCCcchhhhhhhhhhHH
Q 011392 285 IPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPVV 364 (487)
Q Consensus 285 ~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (487)
.++|...-.+-|+... ..+..+.+.+ +...+-+...++.+.+=-..+.+.--.+.....+ .++..+.+...+.
T Consensus 244 ~ilGa~~a~a~g~~~~-~~~~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~---l~k~~~~v~~~v~- 316 (442)
T COG1457 244 MILGAALAAAAGNADS-IADVMLGLGG--FGLPAILILVLGTVTTNANNLYSAGLSFANIIPK---LSKVTRVVIAGVG- 316 (442)
T ss_pred HHHHHHHHHhcCCCch-HHHHHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhh---hhhHHHHHHHHHH-
Confidence 7778888777777641 1223333332 3344444444444444333444444444444332 2233333322221
Q ss_pred HHHHHHHHhc----CchhhHHHhhhhHHHhHHHHhh
Q 011392 365 IPIWFLAIIF----PFFGPINSAVGALLVSFTVYII 396 (487)
Q Consensus 365 ~~~~~lA~~v----P~~~~vl~lvGa~~~~~l~fil 396 (487)
..+++|+.. .+++.++.+.|+....+....+
T Consensus 317 -igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~i 351 (442)
T COG1457 317 -IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMI 351 (442)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 4577777777777655544443
No 53
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.57 E-value=0.00044 Score=72.79 Aligned_cols=53 Identities=13% Similarity=0.235 Sum_probs=43.1
Q ss_pred HHHHHhccccchHHHHhhccCc-cchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011392 245 NILYTFGGHAVTVEIMHAMWKP-QKFKYIYLFATLYVFTLTIPSATAVYWSFGD 297 (487)
Q Consensus 245 ~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~ 297 (487)
.+.|+|.|-......-.|+||| |+.+|++..+..++.++|....+.-....++
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~ 255 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPR 255 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 4578999999999999999999 5689999999999999998766554444343
No 54
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.49 E-value=1.8e-05 Score=83.49 Aligned_cols=333 Identities=11% Similarity=-0.002 Sum_probs=170.0
Q ss_pred HHHHhHhhhhhc-chHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHHHHHhhhCc
Q 011392 58 SCASNQVAQVLL-TLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGP 136 (487)
Q Consensus 58 ~l~~~~iG~GiL-~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~ 136 (487)
.=+.+++|+|++ ....+.++.|-..-++..++++..+..++.-+.+...+++.. .| ++..-+++..|+
T Consensus 40 iaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~---aG--------s~~~ya~~~i~e 108 (554)
T KOG1286|consen 40 LAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVS---AG--------SFYTYAYRFVGE 108 (554)
T ss_pred EEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccc---cc--------cceeeeeeeeCc
Confidence 356788999998 556777787766555555555555555544444433333221 11 233344566777
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcc---------ccccchhHHHHHHH--HHhhhhccCCCcchhHHHHHHH
Q 011392 137 YWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN---------DRLDKRTWTYIFGA--CCATTVFIPSFHNYRIWSFLGL 205 (487)
Q Consensus 137 ~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~---------~~~~~~~~~ii~~~--i~~pl~~l~~l~~l~~~s~~~~ 205 (487)
-+...+.+-.++..+..+-..+..++..+++.. +..+...|..++.+ +.+.+...+-+...+.....-.
T Consensus 109 ~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~k 188 (554)
T KOG1286|consen 109 SLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLAFNK 188 (554)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeehHHHHH
Confidence 777665554444433344444555555555543 34444445433322 2222333444344443332222
Q ss_pred HH-HHHHHHHHHH--HHHhcCCCCCC---CC------CCcccHHHHHHHHHHHHHHhccccchHHHHhhccCc-cchhHH
Q 011392 206 GM-TTYTAWYLTI--AAVVHGQVEGA---SH------TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYI 272 (487)
Q Consensus 206 ~~-~~~~~~~~~~--~~i~~g~~~~~---~~------~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~ 272 (487)
+. ++-+.++.++ .+....+..+. ++ ..|..+.+++.++.+..|+|.|...+-..-.|-||| |..+++
T Consensus 189 vl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~a 268 (554)
T KOG1286|consen 189 ILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPKA 268 (554)
T ss_pred HHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccHH
Confidence 22 2211111111 11111111111 11 113346677899999999999999999999999999 557999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCC----------CchHHH---HHHHHHHHHHHHHHHhhhccHHH
Q 011392 273 YLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLP----------KNRWRD---AAVILMLIHQFITFGFACTPLYF 339 (487)
Q Consensus 273 ~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~~~----------~~~~~~---i~~~~~~i~~~~s~pl~~~p~~~ 339 (487)
+..++..++++|+...+.--+.--.+. +++..+-+ +..... ++++...+.+..+---..++.-+
T Consensus 269 i~~s~~ri~~~Yi~~~~~l~l~vpy~~---~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR 345 (554)
T KOG1286|consen 269 IKQSLLRILLFYILSSIVLGLLVPYND---PRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSR 345 (554)
T ss_pred HHHHHHHHHHHHHHHHHHheEEeccCc---cccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHH
Confidence 999999999999987665432211111 11222111 112223 66777666666665445566655
Q ss_pred HHHHHHccCC-------Ccchhhhhhhhhh-HHHHHHHHHHhcC-----chhhHHHhhhhHHHhHHHHhhhHHHHHHHhh
Q 011392 340 VWEKVIGMHD-------TKSICLRALARLP-VVIPIWFLAIIFP-----FFGPINSAVGALLVSFTVYIIPSLAHMLTYR 406 (487)
Q Consensus 340 ~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~lA~~vP-----~~~~vl~lvGa~~~~~l~filP~l~~l~~~~ 406 (487)
.+-.+-+... -+++ .+=...+. ..+...+++.... .|+.++++.|--. .+++.+=++.|++.++
T Consensus 346 ~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~t--l~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 346 VLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGT--LFAWTLVALSHLRFRY 422 (554)
T ss_pred HHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHH--HHHHHHHHHHHeeeee
Confidence 5544432111 0011 11111122 2222333333322 2577777766544 5555555666666655
Q ss_pred h
Q 011392 407 K 407 (487)
Q Consensus 407 ~ 407 (487)
.
T Consensus 423 a 423 (554)
T KOG1286|consen 423 A 423 (554)
T ss_pred c
Confidence 4
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.46 E-value=0.00025 Score=73.87 Aligned_cols=269 Identities=11% Similarity=0.013 Sum_probs=130.4
Q ss_pred CHHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhc----ccc---cc------chhHHHHHHHHHhhhhcc
Q 011392 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYI----NDR---LD------KRTWTYIFGACCATTVFI 191 (487)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~----~~~---~~------~~~~~ii~~~i~~pl~~l 191 (487)
++.-+.|..||++|..+..++..+..++-........++.+..+ .+. .+ ...+.+++..+.+++...
T Consensus 77 ~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~ 156 (442)
T TIGR00800 77 PFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFF 156 (442)
T ss_pred CcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHc
Confidence 45568899999999988777777666666655555555443221 111 11 122334444555554444
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHh-cCCCCC--CC--CCCcccHHHHHHHHHHHHHH-hccccchHHHHhhccC
Q 011392 192 PSFHNYRIWSFLGLGMTTYTAWYLTIAAVV-HGQVEG--AS--HTAPTKLVLYFTGATNILYT-FGGHAVTVEIMHAMWK 265 (487)
Q Consensus 192 ~~l~~l~~~s~~~~~~~~~~~~~~~~~~i~-~g~~~~--~~--~~~~~~~~~~~~~~~~~~fa-f~~~~~i~~i~~~m~~ 265 (487)
.-.+-++.+...+....+....+.+..... +|..+. .. ..++.....+..++...+=. -..-.+.++..+.+|+
T Consensus 157 ~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~ 236 (442)
T TIGR00800 157 FGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKS 236 (442)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCC
Confidence 444444445555544333222222222222 222211 11 12233344555555543322 2234689999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHh----hccccccccccccCCCCchHHHHHH------HHHHHHHHH-HHHhhh
Q 011392 266 PQKFKYIYLFATLYVFTLTIPSATAVYWS----FGDQLLNHSNAFSLLPKNRWRDAAV------ILMLIHQFI-TFGFAC 334 (487)
Q Consensus 266 p~~~~~~~~~a~~~~~~~y~~~g~~gy~~----fG~~~~~~~~il~~~~~~~~~~i~~------~~~~i~~~~-s~pl~~ 334 (487)
+++-.+....++....+....+|+.+-.. +|+..-+..+++..+.......... ++..+..+. .-..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ 316 (442)
T TIGR00800 237 KKTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANS 316 (442)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 87766666677777777777777777665 7765422122333333222111111 222222222 233345
Q ss_pred ccHHHHHHHHHccCCCcchhhhhhhhhhHHHHH--HHHHHhcCchhhHHHhhhhHHHhHHHHh
Q 011392 335 TPLYFVWEKVIGMHDTKSICLRALARLPVVIPI--WFLAIIFPFFGPINSAVGALLVSFTVYI 395 (487)
Q Consensus 335 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lA~~vP~~~~vl~lvGa~~~~~l~fi 395 (487)
.+.-..+...+++..+.++ ...+..++.+.. ..+.-..+.+..++++.|..........
T Consensus 317 ys~~l~l~~l~~~~~~~~r--~~~i~~ii~~~~~~~~~~~~~~~~~~FL~~lg~~~~P~~gI~ 377 (442)
T TIGR00800 317 YSAGLDIAALLPKYIKIKR--GSLICAIIALLICPWNLYNSSSKFTTFLSSIGGFLSPIAGVM 377 (442)
T ss_pred cchHHHHHHhCcCccccch--HHHHHHHHHHHhccHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666543221111 111111111111 1111122245567777777666555444
No 56
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.42 E-value=3.7e-06 Score=88.58 Aligned_cols=226 Identities=11% Similarity=0.091 Sum_probs=126.0
Q ss_pred HHhHhhhhhc-chHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHHHHHhhhCcch
Q 011392 60 ASNQVAQVLL-TLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYW 138 (487)
Q Consensus 60 ~~~~iG~GiL-~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~ 138 (487)
+..++|+|++ +.+.+..++|....++..++.+++....+.-+.+...+.+ ..+ .+...+++.+|+..
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p----~~G--------g~y~y~~~~lg~~~ 74 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP----SAG--------GFYAYASRGLGPAL 74 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc----ccc--------chhhhhhhccCCcC
Confidence 5667888876 6678888999876677777777777666655555433333 222 45567778889887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhc--ccccc-chhH----HHHHHHHHhhhhc--cCCCcchhHHHHHHHHHHH
Q 011392 139 KAVGLAFNCTFLLFGSVIQLIACASNIYYI--NDRLD-KRTW----TYIFGACCATTVF--IPSFHNYRIWSFLGLGMTT 209 (487)
Q Consensus 139 ~~~~~~~~~~~~~g~~~~~li~~~~~~~~~--~~~~~-~~~~----~ii~~~i~~pl~~--l~~l~~l~~~s~~~~~~~~ 209 (487)
.....+...++............+..+... ..+.. ...| ..++.+++..+.. .|...+.... +..+-.+
T Consensus 75 Gf~~gw~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~--~~~i~~~ 152 (478)
T PF00324_consen 75 GFAAGWAYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFI--LTIIKLI 152 (478)
T ss_pred CceeeHHHHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhhhhhccchHHHH--HHHHhhh
Confidence 765544433333333333333333333332 22222 2333 2233333322222 3333333222 1111111
Q ss_pred HHHHHHHHH--HHhcC-CCCCC-------C---CCC-------cccHHHHHHHHHHHHHHhccccchHHHHhhccCcc-c
Q 011392 210 YTAWYLTIA--AVVHG-QVEGA-------S---HTA-------PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-K 268 (487)
Q Consensus 210 ~~~~~~~~~--~i~~g-~~~~~-------~---~~~-------~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~ 268 (487)
..+.+++.. ....+ ...+. . ..+ ..++.+++.++....++|.|-......-.|.|||+ +
T Consensus 153 ~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~ 232 (478)
T PF00324_consen 153 ALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKT 232 (478)
T ss_pred HhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhh
Confidence 111111111 11111 11111 0 011 12367789999999999999999999999999995 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011392 269 FKYIYLFATLYVFTLTIPSATAVYWSFGDQL 299 (487)
Q Consensus 269 ~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~ 299 (487)
.+|....++....++|+......-...+.+.
T Consensus 233 IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 233 IPRATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 7899999999999999987776555555554
No 57
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.18 E-value=0.0042 Score=64.14 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhccccchHHHHhhccCc-cchhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011392 237 VLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYIYLFATLYVFTLTIPSATAVYWSFGDQL 299 (487)
Q Consensus 237 ~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~ 299 (487)
..+..++-.-++++.|-..-..+..|-|++ ++-+|.+..+..+..++=.++-+.-...-++|.
T Consensus 252 ~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~ 315 (550)
T KOG1289|consen 252 WAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL 315 (550)
T ss_pred HHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 345555555667777777888888899998 456777777777666654444444444556443
No 58
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.13 E-value=0.0047 Score=63.10 Aligned_cols=256 Identities=9% Similarity=0.034 Sum_probs=128.9
Q ss_pred CHHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcc----ccccchhHHHHHHHHHhhhhccCCCcchhHH
Q 011392 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN----DRLDKRTWTYIFGACCATTVFIPSFHNYRIW 200 (487)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~----~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~ 200 (487)
++.-+.|..||++|.++..+...+..+|-...+....++.+..+. +..+...+.++..++..+.+.. ..+.++++
T Consensus 59 ~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-G~~~i~~~ 137 (386)
T TIGR02358 59 SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEESPMLWILIVGILVTLWLLS-GPLAFVWL 137 (386)
T ss_pred CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 567789999999999887766666666555555545555443321 1112233444545545555543 45677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHHHHHH-hccccchHHHHhhccCccchhHHHHHHHHH
Q 011392 201 SFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYT-FGGHAVTVEIMHAMWKPQKFKYIYLFATLY 279 (487)
Q Consensus 201 s~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~i~~i~~~m~~p~~~~~~~~~a~~~ 279 (487)
..++........+...+....+...++.... +.+ ..+..++...+-. -..-...++..+..|+|+|..+....+..+
T Consensus 138 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i 215 (386)
T TIGR02358 138 NNWSVWLLLIATLWLLVVVFSKADLSELWNR-AGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFI 215 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhcCC-CCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHH
Confidence 7777665554333333333332221111111 111 2233233222211 112345789999988888777777777788
Q ss_pred HHHHHHHHHHHHHHhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHccCCCcchhhhhhh
Q 011392 280 VFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALA 359 (487)
Q Consensus 280 ~~~~y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~ 359 (487)
...+...+|.....+.|+.. ..+++.... .....-+...++.+.+-..+..+.-..+...+++-+ ++++..
T Consensus 216 ~~~~~~~~G~~~~~a~~~~d--~~~~~~~~g---~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~~~~---~~~~~~- 286 (386)
T TIGR02358 216 GSCWMYFLGLAVTLATGQTD--IISILAGAG---LGIPALLIILLSTVTTTFMDIYSAAISTGNLLPRLK---VKHLAI- 286 (386)
T ss_pred HHHHHHHHHHHHHHhcCCCC--HHHHHHhcc---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc---chHHHH-
Confidence 88888888887777665431 112222221 112233333444444444445555555555553211 122221
Q ss_pred hhhHHHHHHHHHHhc--CchhhHHHhhhhHHHhHHHH
Q 011392 360 RLPVVIPIWFLAIIF--PFFGPINSAVGALLVSFTVY 394 (487)
Q Consensus 360 ~~~~~~~~~~lA~~v--P~~~~vl~lvGa~~~~~l~f 394 (487)
+..++..+++... ..+..++++.|.........
T Consensus 287 --i~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~gI 321 (386)
T TIGR02358 287 --GVGVLGTLIALLFPVDKYENFLLLIGSVFAPLYAV 321 (386)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222223333332 34666666666655444433
No 59
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.00 E-value=0.0072 Score=58.59 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=80.1
Q ss_pred HHHHHHHhHhhhhhcchH---HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHHHHH
Q 011392 55 AWFSCASNQVAQVLLTLP---YSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLD 131 (487)
Q Consensus 55 a~~~l~~~~iG~GiL~LP---~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~ 131 (487)
-.+-.+.+++|+|.-+== .=|.+-|+- |..-.++.+.+-..++..+.+.-.+.+ ..+|.|+-+
T Consensus 8 ~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~-------------a~~y~~~~~ 73 (349)
T COG3949 8 WAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN-------------ATSYREILK 73 (349)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc-------------ccchHHHHH
Confidence 345667799999954422 223344554 666666667777777665543322221 116999999
Q ss_pred hhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHH--HHHHHHHhhhhccCCCcchhHH
Q 011392 132 GLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWT--YIFGACCATTVFIPSFHNYRIW 200 (487)
Q Consensus 132 ~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~--ii~~~i~~pl~~l~~l~~l~~~ 200 (487)
+.+||++.++.+....+++++.++.-+-..++.++ +..+...|. ++....+..+.++++.+.+..+
T Consensus 74 ~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~---e~~~lP~wiGali~i~~v~i~lfl~~vegi~tv 141 (349)
T COG3949 74 YVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLE---EMFGLPYWIGALIIILLVLILLFLGRVEGIITV 141 (349)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHH---HHhCccHHHHHHHHHHHHHHHHHHhcccceeee
Confidence 99999999999999999988888665544444443 334444443 4444455555567766666443
No 60
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.84 E-value=0.062 Score=56.74 Aligned_cols=143 Identities=13% Similarity=0.050 Sum_probs=86.8
Q ss_pred cHHHHHHHHHHhHhh-hhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHHH
Q 011392 51 SAWDAWFSCASNQVA-QVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (487)
Q Consensus 51 s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 129 (487)
+.+-......-+..+ .-.+++|-...+.|+.......... +........+..-..++.+++ +..|..|.
T Consensus 41 g~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~-~~~~~~~~~~~~rl~~~~~~~---------~~~T~~d~ 110 (493)
T COG0591 41 GPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLL-IGAFLLWLLFAPRLRRLAKAR---------GATTIPDF 110 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccc---------CCccHHHH
Confidence 344555556666666 8888999999999976444433321 233333333332223333221 33489999
Q ss_pred HHhhhC-cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHH
Q 011392 130 LDGLLG-PYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 204 (487)
Q Consensus 130 ~~~~~G-~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~ 204 (487)
-++=|| |..|.+..++..++.++.+..++...+..++.... .+...-.++...++..-..+--+++..|...+=
T Consensus 111 l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iq 185 (493)
T COG0591 111 LEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISYVTGILIGALIVALYTFLGGLRAVVWTDFIQ 185 (493)
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 999999 77788888888888888888888777766543333 444444444445555555666666666665544
No 61
>PRK11017 codB cytosine permease; Provisional
Probab=97.83 E-value=0.013 Score=60.27 Aligned_cols=171 Identities=13% Similarity=0.041 Sum_probs=84.7
Q ss_pred CHHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHH
Q 011392 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 204 (487)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~ 204 (487)
++.-+.|..||.+|.++..+...+..++-...+....+..+....+ .+...+.+++.++..+..+.. .+.++++...+
T Consensus 72 ~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-~~~~~~~~i~~~l~~~~~~~G-~~~i~~~~~~~ 149 (404)
T PRK11017 72 STHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-LDINLLIVLSGLLMTVTAYFG-ISALTILSRIA 149 (404)
T ss_pred CHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 6778999999999988766665555555444443333333322211 233335555556656655543 35555555555
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHHHHHHHHh-ccccchHHHHhhccCccchhHHHHHHHHHHHH
Q 011392 205 LGMTTYTAWYLTIAAVVH-GQVEGASHTAPTKLVLYFTGATNILYTF-GGHAVTVEIMHAMWKPQKFKYIYLFATLYVFT 282 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~i~~-g~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i~~i~~~m~~p~~~~~~~~~a~~~~~~ 282 (487)
........+...+..+.+ +-..+.....+.+...+..++...+=.+ ..-.+.++.-|..|++++-......+..+...
T Consensus 150 ~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~ 229 (404)
T PRK11017 150 VPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNS 229 (404)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHH
Confidence 443332222222222221 1111111011111123444444332222 23467888888888776644444455555555
Q ss_pred HHHHHHHHHHHhhcc
Q 011392 283 LTIPSATAVYWSFGD 297 (487)
Q Consensus 283 ~y~~~g~~gy~~fG~ 297 (487)
+..++|...-...|+
T Consensus 230 ~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 230 LMFIFGAAGAAVYGQ 244 (404)
T ss_pred HHHHHHHHHHHHcCC
Confidence 555566655555554
No 62
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.67 E-value=0.085 Score=53.44 Aligned_cols=307 Identities=11% Similarity=0.017 Sum_probs=135.6
Q ss_pred HHHHhHhhhhhcchHHHHH-hhc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHHHHHhhh
Q 011392 58 SCASNQVAQVLLTLPYSFS-QMG--MLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLL 134 (487)
Q Consensus 58 ~l~~~~iG~GiL~LP~af~-~~G--~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~ 134 (487)
.+..-.+|+|.|=.|-..- ++| |..+.+..++.++..-..+.. ...+. .. +|.++.++ +
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~--------gG---~~~~l~~~-~ 64 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALALV--------GG---GYDSLSAR-I 64 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeeec--------CC---CHHHHHHH-h
Confidence 4566789999999985554 555 666777666666655444322 11111 11 47788766 4
Q ss_pred CcchhhHHHHHHHHHH---H----HHHHHHHHHhhhhhhhccccccchhHH----HHHHHHHhhhhccCCCcchhHHHHH
Q 011392 135 GPYWKAVGLAFNCTFL---L----FGSVIQLIACASNIYYINDRLDKRTWT----YIFGACCATTVFIPSFHNYRIWSFL 203 (487)
Q Consensus 135 G~~~~~~~~~~~~~~~---~----g~~~~~li~~~~~~~~~~~~~~~~~~~----ii~~~i~~pl~~l~~l~~l~~~s~~ 203 (487)
||+...+..+..+... + -..+.|-.... .+.+..+..... +++..+...+++.+ -+....+
T Consensus 65 g~~f~~lf~~~~~l~iGP~~aiPRtaa~s~e~~i~----p~~~~~~~~~~l~i~siiff~i~~~l~~~~----~k~~~~i 136 (378)
T TIGR00796 65 GKVFGILFTVILYLTIGPLFAIPRTATVSFEMGIA----PLLHSPTSLLALFIFSLIFFAVVLLLSLNP----SKLIDRV 136 (378)
T ss_pred ChHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH----hccCcccchHHHHHHHHHHHHHHHHHHcCc----ccHHHHh
Confidence 6765555333332211 1 11234433221 111111111222 22333333344433 3334444
Q ss_pred HHHHH---HHHHHHHHHHHHhcC--CCCCC--CCCCcccHHH-------HHHHHHHHHHHhccccchHHHHh-hccCccc
Q 011392 204 GLGMT---TYTAWYLTIAAVVHG--QVEGA--SHTAPTKLVL-------YFTGATNILYTFGGHAVTVEIMH-AMWKPQK 268 (487)
Q Consensus 204 ~~~~~---~~~~~~~~~~~i~~g--~~~~~--~~~~~~~~~~-------~~~~~~~~~faf~~~~~i~~i~~-~m~~p~~ 268 (487)
+.+.+ +.....+++.++.++ ..++. ++.....+.+ ...+++-++|+. .++-.+.. ++|+|++
T Consensus 137 Gk~LTP~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~---iiv~~i~~~g~~~~~~ 213 (378)
T TIGR00796 137 GKFLTPALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGI---IVVNAIRSRGVTKPKK 213 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCCCCHHH
Confidence 44332 222233444555432 21111 1110011111 124444444443 45556666 8998866
Q ss_pred hhH-HHHHHH---HHHHHHHHHHHHHHHHhhccccc--cccccccCCCC---chH-HHHHHHHHHHHHHHHHHhhhccHH
Q 011392 269 FKY-IYLFAT---LYVFTLTIPSATAVYWSFGDQLL--NHSNAFSLLPK---NRW-RDAAVILMLIHQFITFGFACTPLY 338 (487)
Q Consensus 269 ~~~-~~~~a~---~~~~~~y~~~g~~gy~~fG~~~~--~~~~il~~~~~---~~~-~~i~~~~~~i~~~~s~pl~~~p~~ 338 (487)
..+ ....+. .....+|.-.+..|...-+.-.+ +...++....+ +.. ..+.-+...++.+++---+...+-
T Consensus 214 ~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a 293 (378)
T TIGR00796 214 ITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACS 293 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 443333 33445566666666433221100 11233333221 111 223333334444444333333344
Q ss_pred HHHHHHHccCCCcchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHHHHHHh
Q 011392 339 FVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTY 405 (487)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~~l~~~ 405 (487)
+.+.+... +.+...+. ....+.+++++.. .++.++++ +...+.+++|..+-+.+.
T Consensus 294 ~~f~~~~~---k~~y~~~v---~~~~l~s~~ia~~--Gl~~Ii~~----~~PvL~~~YP~~i~lill 348 (378)
T TIGR00796 294 EYFHKLVP---KLSYKTWV---IVFTLFSFIVANL--GLTQIISI----SIPVLMIIYPLAIVLILL 348 (378)
T ss_pred HHHHHhcC---CCCHHHHH---HHHHHHHHHHHHh--CHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 44444432 22222222 2333344444443 67777774 556777888987777664
No 63
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.60 E-value=0.049 Score=56.07 Aligned_cols=143 Identities=14% Similarity=0.100 Sum_probs=71.9
Q ss_pred CccHHHHHHHHHHhHhhhh-hcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHH
Q 011392 49 GGSAWDAWFSCASNQVAQV-LLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (487)
Q Consensus 49 ~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (487)
+.+.+...+.+..+.+|++ +++.|-...+.|+.. ....+...+........+.+ ++++. +..|..
T Consensus 7 ~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~---~~r~~----------~~~T~~ 72 (406)
T PF00474_consen 7 SLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAP---RLRRS----------GAVTIP 72 (406)
T ss_dssp ---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHH---HHHHT----------T--SHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHH---hhccc----------chhhhh
Confidence 3456777778888877764 568898888888753 22223222222223333332 23211 122788
Q ss_pred HHHHhhhCcch--hhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHH
Q 011392 128 EVLDGLLGPYW--KAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 205 (487)
Q Consensus 128 ~l~~~~~G~~~--~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~ 205 (487)
|.-++-||++. +.+..+..+++.+.....++...+..++... ..+....+++...+++....+.-++...+...+-.
T Consensus 73 e~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~-gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~ 151 (406)
T PF00474_consen 73 EYLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF-GIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQG 151 (406)
T ss_dssp HHHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHHTTCTT------SHHHHHH
T ss_pred hhhhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhcc-chhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHH
Confidence 99999899988 4444444444444445555555555544432 35555555556666666666666666665555443
Q ss_pred H
Q 011392 206 G 206 (487)
Q Consensus 206 ~ 206 (487)
+
T Consensus 152 ~ 152 (406)
T PF00474_consen 152 V 152 (406)
T ss_dssp H
T ss_pred H
Confidence 3
No 64
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.35 E-value=0.24 Score=50.96 Aligned_cols=143 Identities=13% Similarity=0.076 Sum_probs=75.9
Q ss_pred ccHHHHHHHHHHhHhhhh-hcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHH
Q 011392 50 GSAWDAWFSCASNQVAQV-LLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (487)
Q Consensus 50 ~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (487)
.+.+...+.+..+.+|++ .++.|-...+.|+.. ....+...+......++... .. ++. +..|..|
T Consensus 5 ~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~---~~-~~~---------~~~T~~e 70 (407)
T TIGR00813 5 LGGWVVAASLFASYISASQFLGLPGAIYAYGFAI-GFYELGALVLLIILGWLFVP---IF-INN---------GAYTMPE 70 (407)
T ss_pred CCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HH-HHc---------CCCchhH
Confidence 455666677777766654 558887777778542 22111111111122222221 11 111 1237889
Q ss_pred HHHhhhCcc-hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Q 011392 129 VLDGLLGPY-WKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGM 207 (487)
Q Consensus 129 l~~~~~G~~-~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~~~ 207 (487)
..++-||++ .+.+..+...+..+.....++...+..++.+. ..+....+++...+++......-++...+.-.+-.+.
T Consensus 71 ~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~-gi~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 71 YLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELIT-GLDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 888889985 55554455555555555566665555554432 3444444555555555556666666666665555443
No 65
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.34 E-value=0.13 Score=52.99 Aligned_cols=246 Identities=11% Similarity=0.083 Sum_probs=118.9
Q ss_pred hhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHh--cCC-----CCCCCCCCcccHHHHHHHHHHHHHHhc-cccchHHH
Q 011392 188 TVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVV--HGQ-----VEGASHTAPTKLVLYFTGATNILYTFG-GHAVTVEI 259 (487)
Q Consensus 188 l~~l~~l~~l~~~s~~~~~~~~~~~~~~~~~~i~--~g~-----~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~i~~i 259 (487)
++..+.+++++++-..+-..+.+.+..+++-.+. +|. .|......+.....++.++...+-.|+ ..-|+|+.
T Consensus 184 l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DF 263 (497)
T COG1953 184 LVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDF 263 (497)
T ss_pred HHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 3445667888888776666655444444443333 331 121111222333344433333332232 24688999
Q ss_pred HhhccCccchhHHHHHHHHHHHHHH----HHHHHHHHHhhccccccccccccCCCCchHHH-HHHHHHHHHHHHH-HHhh
Q 011392 260 MHAMWKPQKFKYIYLFATLYVFTLT----IPSATAVYWSFGDQLLNHSNAFSLLPKNRWRD-AAVILMLIHQFIT-FGFA 333 (487)
Q Consensus 260 ~~~m~~p~~~~~~~~~a~~~~~~~y----~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~-i~~~~~~i~~~~s-~pl~ 333 (487)
-+.-|+|++-.+--.++.-+.+.+. ++.+...+..||+..-|.-++++.+.+..... ++-+.+++..+.. ..-+
T Consensus 264 sRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN 343 (497)
T COG1953 264 TRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNIAAN 343 (497)
T ss_pred hcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHhc
Confidence 8888887554332223333333333 33445568899999755457888888655543 4444444444443 3334
Q ss_pred hccHHHHHHHHHccCCCcchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHHHHHHhhhHhhhhh
Q 011392 334 CTPLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKASARQN 413 (487)
Q Consensus 334 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~~l~~~~~~~~~~~ 413 (487)
.++.-..+...+.+.-..++-..+...+.+++.++-+-..-..|..+++..|++.+.....++-= |+..+|++ .+-.
T Consensus 344 ~vsp~~D~s~l~Pk~in~krg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmiaD--yflirk~~-~~v~ 420 (497)
T COG1953 344 IVSPGYDLSALFPKYINIKRGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIAD--YFLVRKGR-LNLD 420 (497)
T ss_pred cCChHHHHHHhcccccchhhhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHHH--HHhhhcCc-cChH
Confidence 56666666666642211111111212223333333332223346677777777776666555322 22222322 2222
Q ss_pred ccCCCC---CcccchhhHHHHHHHHH
Q 011392 414 AAEKPP---FFLPSWTAMYAFNIFVV 436 (487)
Q Consensus 414 ~~~~~~---~~~~~~~~~~~~~~~~i 436 (487)
+.++++ +|...|.++-+..+.+-
T Consensus 421 ~ly~~~G~y~y~~G~N~rA~~A~~~G 446 (497)
T COG1953 421 ELYTEPGEYYYYGGWNWRAFAAYLCG 446 (497)
T ss_pred HhcCCCCCeEEecCcCHHHHHHHHHh
Confidence 333322 23456655555555443
No 66
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.25 E-value=0.36 Score=50.78 Aligned_cols=150 Identities=13% Similarity=0.024 Sum_probs=81.2
Q ss_pred cCccHHHHHHHHHHhHhhhhh-cchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCH
Q 011392 48 HGGSAWDAWFSCASNQVAQVL-LTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (487)
++.+.+.....+..+.+|++. ++.|-...+-|+.+....... ......+...+..-..+.-++. +..|.
T Consensus 40 r~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~T~ 109 (471)
T TIGR02119 40 RSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQ-VPTGYFVLGVLGKKFAIISRKY---------NAITI 109 (471)
T ss_pred CcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc---------CCccH
Confidence 345677778888888887765 478877777786421111110 0111111112221111111111 12378
Q ss_pred HHHHHhhhCcch-hhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHH
Q 011392 127 FEVLDGLLGPYW-KAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 205 (487)
Q Consensus 127 ~~l~~~~~G~~~-~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~ 205 (487)
.|.-++-||++. +.+..+...++.++....++...+..++.+. ..+....+++..++++....+.-++...+...+-.
T Consensus 110 ~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~-gi~~~~~iii~~~iv~iYt~~GG~~av~~td~iQ~ 188 (471)
T TIGR02119 110 NDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLT-GLSYLTALFIFSSSVLIYTTFGGFRAVALTDAIQG 188 (471)
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999888899765 4455555555555555555555554444432 35556666666666666666776777777665554
Q ss_pred HHH
Q 011392 206 GMT 208 (487)
Q Consensus 206 ~~~ 208 (487)
+..
T Consensus 189 ~v~ 191 (471)
T TIGR02119 189 IVM 191 (471)
T ss_pred HHH
Confidence 433
No 67
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.90 E-value=0.01 Score=61.78 Aligned_cols=169 Identities=6% Similarity=-0.104 Sum_probs=77.5
Q ss_pred CHHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc-c-------------chh--HHHHHHHHHhhh
Q 011392 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRL-D-------------KRT--WTYIFGACCATT 188 (487)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~-~-------------~~~--~~ii~~~i~~pl 188 (487)
+..-+.|..||.+|..+..+...+...|-........++.+....... + ... +.++..++..+.
T Consensus 72 ~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 151 (440)
T PF02133_consen 72 PTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLF 151 (440)
T ss_dssp -HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHH
T ss_pred CchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHH
Confidence 466788999999999887777777666666666556665554322111 1 111 111222222222
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCC-CcccHHHHHHHHHHHHHHhc-cccchHHHHhhccC
Q 011392 189 VFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQV-EGASHT-APTKLVLYFTGATNILYTFG-GHAVTVEIMHAMWK 265 (487)
Q Consensus 189 ~~l~~l~~l~~~s~~~~~~~~~~~~~~~~~~i~~g~~-~~~~~~-~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~ 265 (487)
. ...++.++.+............+...+....+... +..+.. .+.....+..++...+-.+. .-.+.++..+.+|+
T Consensus 152 ~-~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~ 230 (440)
T PF02133_consen 152 A-IYGMKALRRLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKS 230 (440)
T ss_dssp H-CTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--
T ss_pred H-hcCHHHHHhHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCC
Confidence 2 23345555555544433322211222222221111 101111 11100023333332222211 23456788999998
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011392 266 PQKFKYIYLFATLYVFTLTIPSATAVYWS 294 (487)
Q Consensus 266 p~~~~~~~~~a~~~~~~~y~~~g~~gy~~ 294 (487)
+++-.+....++.........+|+.|...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 231 DTSAWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 87777766677766666666666665444
No 68
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=96.60 E-value=1.3 Score=46.91 Aligned_cols=146 Identities=12% Similarity=0.051 Sum_probs=68.7
Q ss_pred ccHHHHHHHHHHhHhhhh-hcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhccccccccccCHH
Q 011392 50 GSAWDAWFSCASNQVAQV-LLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRS-RKEKENVSFKNHVIQWF 127 (487)
Q Consensus 50 ~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~-~~~~~~~~~~~~~~~y~ 127 (487)
.+.+-..+.+..+.+++. .++.|-...+.|+.. ........+........+..-.+++.+ ++ ...|..
T Consensus 38 ~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~---------~~~T~~ 107 (487)
T TIGR02121 38 LGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAH---------NSITLP 107 (487)
T ss_pred ccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhc---------CCccHH
Confidence 455666666666666644 567886666778753 222221111112222233322122221 11 123678
Q ss_pred HHHHhhhCcchhhH---HHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHH
Q 011392 128 EVLDGLLGPYWKAV---GLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 204 (487)
Q Consensus 128 ~l~~~~~G~~~~~~---~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~ 204 (487)
|.-++=||++.+.+ ..++..+.........+...+..++.+. ..+....+++..++...-....-++...+.-.+-
T Consensus 108 e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~-gi~~~~~iii~~~i~~~Yt~~GGl~av~~TD~iQ 186 (487)
T TIGR02121 108 DFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTF-GLDYKTGLLIGALIIVIYTFFGGFLAVSWTDFVQ 186 (487)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88888888654433 2222222222222333333333333322 3444445555555555556666666666655544
Q ss_pred HH
Q 011392 205 LG 206 (487)
Q Consensus 205 ~~ 206 (487)
.+
T Consensus 187 ~~ 188 (487)
T TIGR02121 187 GL 188 (487)
T ss_pred HH
Confidence 33
No 69
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=96.49 E-value=1.5 Score=46.35 Aligned_cols=147 Identities=11% Similarity=0.004 Sum_probs=73.9
Q ss_pred ccHHHHHHHHHHhHhhh-hhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHH
Q 011392 50 GSAWDAWFSCASNQVAQ-VLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (487)
Q Consensus 50 ~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (487)
.+.+...+.+..+.+|+ ..++.|-...+-|+..-...+.. ......+..++.....+..++. +..|..|
T Consensus 43 ~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~---------~~~T~~e 112 (483)
T PRK09442 43 MGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQ-VPTVWLSLGILGKKFAILARKY---------NAVTLND 112 (483)
T ss_pred ccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc---------CCccHHH
Confidence 45566667777776665 55688866666676421111110 0111112222222111111111 2237899
Q ss_pred HHHhhhCcchhh-HHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Q 011392 129 VLDGLLGPYWKA-VGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGM 207 (487)
Q Consensus 129 l~~~~~G~~~~~-~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~~~ 207 (487)
..++-||++... +..+...+..+.....++...+..++.+. ..+....+++..++++....+.-++...+...+-.+.
T Consensus 113 ~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~-gi~~~~~iii~~~iv~iYt~~GGl~av~~TD~iQ~~i 191 (483)
T PRK09442 113 MLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT-GISYETGLLIFGITVALYTAFGGFRAVVLTDALQGIV 191 (483)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 888888876543 33333333334444445544444444332 3555555555566656666677777776665554443
No 70
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.38 E-value=1.5 Score=45.17 Aligned_cols=151 Identities=16% Similarity=0.196 Sum_probs=84.4
Q ss_pred ccHHHHHHHHHHhHhhhh-hcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHH
Q 011392 50 GSAWDAWFSCASNQVAQV-LLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (487)
Q Consensus 50 ~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (487)
.|.+|+++..+.+.+|+| ++++|-|.+..| ..+++.+.+.+++..-+.+.-..+..+|+++.+ ++ +|... ....
T Consensus 47 iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~-~g-~~~GG--P~yy 121 (425)
T TIGR00835 47 VSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDA-DG-VFRGG--PMYY 121 (425)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC-CC-CEecC--hHHH
Confidence 899999999999999998 999999988777 557777777777777766655555456654321 11 11110 0156
Q ss_pred HHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHH-HHHHHHhhhhccCCCcchhHHHHHHHHH
Q 011392 129 VLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTY-IFGACCATTVFIPSFHNYRIWSFLGLGM 207 (487)
Q Consensus 129 l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~i-i~~~i~~pl~~l~~l~~l~~~s~~~~~~ 207 (487)
+-+...||+...+..++.+.+....+..+.-...+.+.. .++...|.. +...++..+.....++++..++..-+..
T Consensus 122 i~~gl~~k~lg~lfa~~~i~~f~~~~~~Q~nsi~~~~~~---~~~~~~~v~~i~l~~l~~~vi~GGik~Ia~v~~~lvP~ 198 (425)
T TIGR00835 122 IKKGLGMRWLAVLFAVFLIASFGIGNMVQANAIASALSN---AFNVPKLVTGIVLTVLTALIIFGGLKRIAKISSVVVPF 198 (425)
T ss_pred HHHHhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 666666676554444442222122222332223333321 112223322 2223333334455677777777665554
Q ss_pred H
Q 011392 208 T 208 (487)
Q Consensus 208 ~ 208 (487)
+
T Consensus 199 m 199 (425)
T TIGR00835 199 M 199 (425)
T ss_pred H
Confidence 4
No 71
>PRK12488 acetate permease; Provisional
Probab=96.34 E-value=1.9 Score=46.20 Aligned_cols=146 Identities=14% Similarity=0.053 Sum_probs=80.0
Q ss_pred ecCccHHHHHHHHHHhHhhhhh-cchHHHHHhhchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhcccccccccc
Q 011392 47 WHGGSAWDAWFSCASNQVAQVL-LTLPYSFSQMGMLSGILLQIFYGFLGSWT-AYLISVLYVEYRSRKEKENVSFKNHVI 124 (487)
Q Consensus 47 ~~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~g~i~l~~~~~ls~~s-~~ll~~~~~~~~~~~~~~~~~~~~~~~ 124 (487)
.++.+.|...+.+..+.++++. ++.|-...+.|+- +....+. ..+.+.- ..++. .++++. + ..
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~~g-~~~g~~~~~~~~a---~~lr~~----g------~~ 130 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYALG-VLAGWPIILFLIA---ERLRNL----G------KY 130 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHHHH-HHHHHHHHHHHHH---HHHHHC----C------Cc
Confidence 3345677777778888777765 6899877778874 2221111 1111111 11122 122211 1 12
Q ss_pred CHHHHHHhhhC-cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHH
Q 011392 125 QWFEVLDGLLG-PYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 203 (487)
Q Consensus 125 ~y~~l~~~~~G-~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~ 203 (487)
|..|.-++=|| |+.|.+..+...+..+.....++...+..++.+. ..+....+++..++++..+...-++...|...+
T Consensus 131 T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~-gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~i 209 (549)
T PRK12488 131 TFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF-GISYLYAVVIVGALMVLYVTFGGMLATTWVQII 209 (549)
T ss_pred chHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 68887666666 5566665555555545545555555555544432 355555555666666666677777777776665
Q ss_pred HHHHH
Q 011392 204 GLGMT 208 (487)
Q Consensus 204 ~~~~~ 208 (487)
-.+.+
T Consensus 210 Q~~im 214 (549)
T PRK12488 210 KAVLL 214 (549)
T ss_pred HHHHH
Confidence 54433
No 72
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=96.31 E-value=0.4 Score=47.71 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=70.3
Q ss_pred ccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHHH
Q 011392 50 GSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (487)
Q Consensus 50 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 129 (487)
.+.+--+-|=..++-|+|-+-=|..=.+-||+++.+.+++=+++.----.... . -..-|+ ++ .|.+|+
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~s-l--~~SvR~--~G-------~Si~~i 119 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGS-L--MASVRH--KG-------KSIGEI 119 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHH-H--hhhhcC--CC-------ccHHHH
Confidence 44556667788899999999999888999999998887764433221111211 0 011111 12 179999
Q ss_pred HHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 011392 130 LDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASN 164 (487)
Q Consensus 130 ~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~ 164 (487)
+++..||+.+.+..++..+.++.+...+.....+.
T Consensus 120 ~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~ 154 (376)
T PF02554_consen 120 AGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANT 154 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888887777776665554433
No 73
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=96.29 E-value=1.9 Score=45.68 Aligned_cols=150 Identities=14% Similarity=0.075 Sum_probs=72.7
Q ss_pred ecCccHHHHHHHHHHhHhhhhhc-chHHHHHhhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcccccccccc
Q 011392 47 WHGGSAWDAWFSCASNQVAQVLL-TLPYSFSQMGMLSGILLQIFYGFLGS-WTAYLISVLYVEYRSRKEKENVSFKNHVI 124 (487)
Q Consensus 47 ~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~g~i~l~~~~~ls~-~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 124 (487)
.++.+.+-..+.+..+.+++..+ +.|-...+.|+..-. ..+...+.. ....++.. +.+.... ++....
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~--~~~~~~~~~~l~~~~~~~---~l~~~~~-----~~~~~~ 108 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESW--IAIGLTLGAWINWKLVAG---RLRVHTE-----YNNNAL 108 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHH---HHHHHHH-----HhcCce
Confidence 33456677777777777776654 788877788875311 111111111 11111111 1111100 011123
Q ss_pred CHHHHHHhhhCcchhhH---HHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHH
Q 011392 125 QWFEVLDGLLGPYWKAV---GLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWS 201 (487)
Q Consensus 125 ~y~~l~~~~~G~~~~~~---~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s 201 (487)
|..|.-++=||++.+.+ ..++..++.......++...+..++.+. ..+....+++...+++....+.-++...+.-
T Consensus 109 T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~-gi~~~~~iii~~~iv~iYt~~GGl~aV~~TD 187 (502)
T PRK15419 109 TLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTF-GMSYETALWAGAAATILYTFIGGFLAVSWTD 187 (502)
T ss_pred eHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 67787777788654433 2232233322323333333333333322 3455555566666666666776666666665
Q ss_pred HHHHHH
Q 011392 202 FLGLGM 207 (487)
Q Consensus 202 ~~~~~~ 207 (487)
.+-.+.
T Consensus 188 ~iQ~~i 193 (502)
T PRK15419 188 TVQASL 193 (502)
T ss_pred HHHHHH
Confidence 555433
No 74
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=96.12 E-value=2 Score=44.19 Aligned_cols=317 Identities=11% Similarity=0.025 Sum_probs=147.1
Q ss_pred HHHHHHHHHHhHhhhhhcchHHHHH-hhc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHH
Q 011392 52 AWDAWFSCASNQVAQVLLTLPYSFS-QMG--MLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (487)
Q Consensus 52 ~~~a~~~l~~~~iG~GiL~LP~af~-~~G--~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (487)
.+..-+.+..-..|+|=|=.|-..- ++| |.++.+.+++.+..--.-+.+-. .+. . + ++.+
T Consensus 5 ~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~---~~~---~---~--------~~~~ 67 (427)
T PF05525_consen 5 ILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAV---AKS---G---G--------GIED 67 (427)
T ss_pred hhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH---hhc---C---C--------CHHH
Confidence 3455577888899999999997665 445 88888888776665444332211 011 0 1 4667
Q ss_pred HHHhhhCcchhhHHHHHHHHHHHHH--------HHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHH
Q 011392 129 VLDGLLGPYWKAVGLAFNCTFLLFG--------SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIW 200 (487)
Q Consensus 129 l~~~~~G~~~~~~~~~~~~~~~~g~--------~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~ 200 (487)
+++++ ||+...+.....+. ..|- ++.|-+........ +.........+++..+...+++-|+ +-+.++
T Consensus 68 l~~~v-~~~f~~if~~~i~l-~IGP~~aiPRtaa~sfe~~i~p~~~~-~~~~~~~ifs~iFF~i~~~l~~~p~-kivd~i 143 (427)
T PF05525_consen 68 LASRV-GPKFALIFTILIYL-SIGPLFAIPRTAAVSFEMGIAPFFPE-NSNISLLIFSIIFFAITYLLSLNPS-KIVDRI 143 (427)
T ss_pred Hhccc-CcHHHHHHHHHHHH-HHHhcccCcchhhhhHHHhhhccCCc-ccccchhhhhHHHHHHHHHHHhchh-hHHHHH
Confidence 77664 44433332221111 1111 12332222111110 1133344455556666666666553 222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCCCCC--CCCc---ccHH---HHHHHHHHHHHHhccccchHHHHh-hccCccch
Q 011392 201 SFLGLGMTTYTAWYLTIAAVVHG--QVEGAS--HTAP---TKLV---LYFTGATNILYTFGGHAVTVEIMH-AMWKPQKF 269 (487)
Q Consensus 201 s~~~~~~~~~~~~~~~~~~i~~g--~~~~~~--~~~~---~~~~---~~~~~~~~~~faf~~~~~i~~i~~-~m~~p~~~ 269 (487)
.-+-....+....++++.++.+. .....+ +... .++. +...+++-++|+- .++-.+.+ ..+++|+.
T Consensus 144 Gk~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~---iIi~~i~~~g~~~~k~~ 220 (427)
T PF05525_consen 144 GKFLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGI---IIINAIRQKGYKDKKEI 220 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHhCCCCHHHH
Confidence 22222222223333444555432 221111 1111 1111 1234444344433 33334433 24455555
Q ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHhhcc---ccccccccccCCCCchH----HHHHHHHHHHHHHHHHHhhhccHH
Q 011392 270 KYIYL----FATLYVFTLTIPSATAVYWSFGD---QLLNHSNAFSLLPKNRW----RDAAVILMLIHQFITFGFACTPLY 338 (487)
Q Consensus 270 ~~~~~----~a~~~~~~~y~~~g~~gy~~fG~---~~~~~~~il~~~~~~~~----~~i~~~~~~i~~~~s~pl~~~p~~ 338 (487)
+|... ++...-.++|...+..|...-+. +.+ ...++....+..+ ..+..+...++.+++-.-+...+-
T Consensus 221 ~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~-g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a 299 (427)
T PF05525_consen 221 KKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDIN-GAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACA 299 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCC-HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 34444455677777766554332 221 2344443332111 223333344444444444455566
Q ss_pred HHHHHHHccCCCcchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHHHHHHh
Q 011392 339 FVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTY 405 (487)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~~l~~~ 405 (487)
+.+++..+ +.+...+.. +..+.++++|.. .++.++.+ +...+.++.|...-+.+.
T Consensus 300 ~yf~~~~~---kisY~~~v~---i~~i~S~~ian~--Gl~~Ii~~----s~PiL~~iYP~~IvLIll 354 (427)
T PF05525_consen 300 EYFSELFP---KISYKVWVI---IFTIFSFIIANL--GLDQIIKI----SVPILMFIYPVAIVLILL 354 (427)
T ss_pred HHHHHHhc---ccChHHHHH---HHHHHHHHHHHh--CHHHHHHH----HHHHHHHHhHHHHHHHHH
Confidence 66666654 222222222 333445555543 36667654 556788999998877763
No 75
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=95.50 E-value=4.4 Score=43.49 Aligned_cols=140 Identities=11% Similarity=0.086 Sum_probs=69.9
Q ss_pred ccHHHHHHHHHHhHhh-hhhcchHHHHHhhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhccccccccccCHH
Q 011392 50 GSAWDAWFSCASNQVA-QVLLTLPYSFSQMGMLSGILLQIFYGFLGS-WTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (487)
Q Consensus 50 ~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~i~l~~~~~ls~-~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (487)
.+.|...+.+..+.++ ...++.|-...+.|+- +....+. ..+.+ ....++.+ +.++ . + ..|..
T Consensus 69 ~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~---~lrr-~---g------~~T~~ 133 (549)
T TIGR02711 69 ITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLG-FLVGWPIILFLIAE---RLRN-L---G------RYTFA 133 (549)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHH-HHHHHHHHHHHHHH---HHHH-c---C------CccHH
Confidence 4455555666666555 4567888777777864 2222211 11111 11122222 2211 1 1 12788
Q ss_pred HHHHhhhCc-chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHH
Q 011392 128 EVLDGLLGP-YWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 205 (487)
Q Consensus 128 ~l~~~~~G~-~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~ 205 (487)
|..++=||. ..|.+..+...+..+.....++...+..++.+. ..+....+++..++++....+.-++...|...+=.
T Consensus 134 d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~-gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~ 211 (549)
T TIGR02711 134 DVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLF-GLNYHVAVVLVGILMVMYVLFGGMLATTWVQIIKA 211 (549)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 876666664 455554444444434444455555554444432 34444445555566666666666666666655443
No 76
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.40 E-value=3.5 Score=41.64 Aligned_cols=76 Identities=8% Similarity=0.076 Sum_probs=44.7
Q ss_pred CHHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhc--cCCCcchhHHH
Q 011392 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVF--IPSFHNYRIWS 201 (487)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~--l~~l~~l~~~s 201 (487)
+..|..++-+||++.+...+...+-........+...+..++.+. ..+...+.++..+....+.+ .++.+.+..+.
T Consensus 43 ~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-g~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~ 120 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF-GIPLWIWVLLVAVIAILLLWLSSGGYRRLERIL 120 (358)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 577788888899887766555544444444444444443333333 45666676666655555555 55566665543
No 77
>PRK15015 carbon starvation protein A; Provisional
Probab=95.17 E-value=0.81 Score=48.80 Aligned_cols=92 Identities=15% Similarity=0.119 Sum_probs=60.8
Q ss_pred HHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHHHHHhhh
Q 011392 55 AWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLL 134 (487)
Q Consensus 55 a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~ 134 (487)
-+-|=..++-|+|-+-=|.-=.+.||+++.+.+++=+++.----.+.. . -..-|+ +| +|.+|++++..
T Consensus 88 LfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~-L--~~S~R~--~G-------rSig~ia~~~i 155 (701)
T PRK15015 88 LFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMV-L--FVSTRR--DG-------RSLGELVKEEM 155 (701)
T ss_pred hhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhh-e--eeeecC--CC-------ccHHHHHHHHh
Confidence 345677889999999999988899999999988764333211111111 0 001111 12 27999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHH
Q 011392 135 GPYWKAVGLAFNCTFLLFGSVIQL 158 (487)
Q Consensus 135 G~~~~~~~~~~~~~~~~g~~~~~l 158 (487)
|++++.+..+...+.+......+.
T Consensus 156 G~~~~~lfli~i~~iliiviAvfa 179 (701)
T PRK15015 156 GPTAGVIALVACFMIMVIILAVLA 179 (701)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877766666555544443
No 78
>PRK09395 actP acetate permease; Provisional
Probab=94.24 E-value=9.4 Score=41.04 Aligned_cols=141 Identities=10% Similarity=0.059 Sum_probs=72.0
Q ss_pred ccHHHHHHHHHHhHhhhh-hcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHH
Q 011392 50 GSAWDAWFSCASNQVAQV-LLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (487)
Q Consensus 50 ~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (487)
.+.|...+.+..+.++++ .++.|-...+.|+.. ....+...+.......++. .+.++. + ..|+.|
T Consensus 71 l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~---~~~r~~----g------~~T~~d 136 (551)
T PRK09395 71 ITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIA---ERLRNL----G------KYTFAD 136 (551)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHH---HHHhhC----C------CccHHH
Confidence 445556666777766654 458887777778742 2211111111111111222 122111 1 137888
Q ss_pred HHHhhhCcc-hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHH
Q 011392 129 VLDGLLGPY-WKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 205 (487)
Q Consensus 129 l~~~~~G~~-~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~ 205 (487)
.-++=||++ .|.+..+...+..+.....++...+..++.+. ..+....+++..++++......-++...|.-.+-.
T Consensus 137 ~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~-gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~ 213 (551)
T PRK09395 137 VASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF-GLNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKA 213 (551)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 877778854 56554444444333333444544444444432 35555556666666666666666666666655443
No 79
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=94.20 E-value=9.6 Score=40.97 Aligned_cols=143 Identities=8% Similarity=-0.077 Sum_probs=70.4
Q ss_pred ecCccHHHHHHHHHHhHhhh-hhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccC
Q 011392 47 WHGGSAWDAWFSCASNQVAQ-VLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQ 125 (487)
Q Consensus 47 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 125 (487)
.++.+.|...+.+..+.+++ ..++.|-...+.|+-. ................++.. .+++. ...|
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~p---~~rr~----------~~~T 96 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDG-LAYLMGWTGGYVLLALLLAP---YLRKF----------GKYT 96 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHH---HHHHC----------CCcc
Confidence 33456777777788887765 4568887766677642 11111111111112223332 22211 1126
Q ss_pred HHHHHHhhhCcch-hhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHH
Q 011392 126 WFEVLDGLLGPYW-KAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 204 (487)
Q Consensus 126 y~~l~~~~~G~~~-~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~ 204 (487)
..|.-++=||++. +.+..+...+..+.....++...+..++.+. ..+....+++..++++..+.+.-++...|.-.+-
T Consensus 97 ~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~-gi~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ 175 (552)
T TIGR03648 97 VPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFL-EVDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQ 175 (552)
T ss_pred HHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6776666677554 5544444333333333344444443333322 3455555555555555556666666666555444
No 80
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=93.94 E-value=8.6 Score=39.49 Aligned_cols=65 Identities=20% Similarity=0.171 Sum_probs=45.6
Q ss_pred eecCccHHHHHHHHHHhHhhhhhc-chHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011392 46 LWHGGSAWDAWFSCASNQVAQVLL-TLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSR 111 (487)
Q Consensus 46 ~~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~ 111 (487)
...+.|.+||+..-+...+|+|=. +..-|..-.|-. .++.|.+.+++..-+-+.=..+..+|+++
T Consensus 15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPG-AiFWMWi~a~~Gmatk~~E~~La~~yR~~ 80 (416)
T PF01235_consen 15 EEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPG-AIFWMWISALLGMATKYAEVTLAQKYREK 80 (416)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchh-HHHHHHHHHHHHHHHHHHHHHHHHHheEE
Confidence 344689999999999999999955 788888877743 77777777777665544322222455543
No 81
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=93.00 E-value=3 Score=43.69 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhccccccccccCHHHH
Q 011392 51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAY-LISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (487)
Q Consensus 51 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~-ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 129 (487)
+.+-.+-|=..++-|+|-+.=|.-=+|.||.+|.+.+++=+.+.- +.| .+. . -..-|+ +| .|.+|+
T Consensus 53 nk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaG-aVhD~~~-L--~~SvR~--~G-------~Si~~i 119 (575)
T COG1966 53 NKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAG-AVHDYFS-L--MLSVRH--GG-------KSIGEI 119 (575)
T ss_pred CchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhh-hhhhhhh-e--eeeecc--CC-------ccHHHH
Confidence 444556777888999999999999999999999998877433321 111 111 0 111111 12 279999
Q ss_pred HHhhhCcchhhHHHHHHHHHHHHHHHHH
Q 011392 130 LDGLLGPYWKAVGLAFNCTFLLFGSVIQ 157 (487)
Q Consensus 130 ~~~~~G~~~~~~~~~~~~~~~~g~~~~~ 157 (487)
+++..|+..+.+..+...+.+.......
T Consensus 120 a~~~lG~~a~~~~~~~~l~iliiv~Avf 147 (575)
T COG1966 120 AGKYLGRTAKVFFLLLALILLILVGAVF 147 (575)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887666555544444333
No 82
>PRK00701 manganese transport protein MntH; Reviewed
Probab=92.84 E-value=14 Score=38.53 Aligned_cols=35 Identities=3% Similarity=-0.204 Sum_probs=21.0
Q ss_pred CHHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHH
Q 011392 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLI 159 (487)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li 159 (487)
+..|+.++-+||++.+...+...+-..+.....++
T Consensus 95 ~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~ 129 (439)
T PRK00701 95 DLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVI 129 (439)
T ss_pred CHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999988776444433333333333333
No 83
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=92.62 E-value=14 Score=38.05 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=47.1
Q ss_pred HHHHHHccCCCcchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHHHHHHhhh
Q 011392 340 VWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRK 407 (487)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~~l~~~~~ 407 (487)
.++...+. +.+.|.+|...|....+++.++.+.+-+...++.+.+.+.+..+-+.+++++++...|+
T Consensus 312 ~~~g~~~~-~~~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 312 VMEGFLNW-RIPLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred HHHhhhcc-cCchHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 34444432 22467777877877777766666665588999999999998888888777777776554
No 84
>PRK10484 putative transporter; Provisional
Probab=90.07 E-value=29 Score=36.97 Aligned_cols=82 Identities=10% Similarity=-0.056 Sum_probs=42.2
Q ss_pred CccHHHHHHHHHHhHhhhh-hcchHHHHHhhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhccccccccccCH
Q 011392 49 GGSAWDAWFSCASNQVAQV-LLTLPYSFSQMGMLSGILLQIFYGFLGS-WTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (487)
Q Consensus 49 ~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~ls~-~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (487)
+.+.+-..+.+..+.++++ .++.|-...+-|+..... .. .+.+.. ....++. .++++. ...|.
T Consensus 39 ~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~-~~-~~~~~~~~~~~~~~---p~~~r~----------~~~T~ 103 (523)
T PRK10484 39 SLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAW-EV-TAAIALIILALIFL---PRYLKS----------GITTI 103 (523)
T ss_pred CCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHH-HH-HHHHHHHHHHHHHH---HHHHhc----------CCccH
Confidence 3556666667777766555 457887666677643111 11 111111 1122222 222211 22378
Q ss_pred HHHHHhhhCcchhhHHHHH
Q 011392 127 FEVLDGLLGPYWKAVGLAF 145 (487)
Q Consensus 127 ~~l~~~~~G~~~~~~~~~~ 145 (487)
.|.-++-||++.+.+...+
T Consensus 104 ~e~l~~Ryg~~~~~~~~~~ 122 (523)
T PRK10484 104 PDFLEERYDKTTRRIVSIL 122 (523)
T ss_pred HHHHHHhcCchhHHHHHHH
Confidence 8888888898877654443
No 85
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=89.90 E-value=1.5 Score=46.06 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=37.2
Q ss_pred eeecCccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 011392 45 FLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTA 98 (487)
Q Consensus 45 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~ 98 (487)
..|.++=..+...|+...|+ .|=+++...|+|+..|++++.+...++..+.
T Consensus 30 fg~~~gv~~~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~ 80 (643)
T KOG2083|consen 30 FGWWDGVFVRCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITV 80 (643)
T ss_pred EeeeehhhhhhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHH
Confidence 33444434466777766655 4678999999999999999988777777664
No 86
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=87.16 E-value=38 Score=34.64 Aligned_cols=61 Identities=18% Similarity=0.119 Sum_probs=32.8
Q ss_pred HHHHHHHHccCCCcchhhhhhhhhhHHHHHHHHHHhc--CchhhHHHhhhhHHHhHHHHhhhHHHHHH
Q 011392 338 YFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIF--PFFGPINSAVGALLVSFTVYIIPSLAHML 403 (487)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~v--P~~~~vl~lvGa~~~~~l~filP~l~~l~ 403 (487)
....+..++.+. +++.++...|.+..++..+++... .+...++-+... ...+.+|......
T Consensus 318 ~~v~~gfl~~~~-~~~~r~~~~~~~~ii~aliv~~~~g~~~p~~liv~aQv----~~~l~LP~~~i~L 380 (390)
T TIGR01197 318 QFVMEGFLNWRW-SPWLRRLITRAIAIIPCLLVAAFGGREGLTGALNASQV----VLSLLLPFALIPL 380 (390)
T ss_pred HHHHHHHcCCCC-cHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH----HHHHHHHHHHHHH
Confidence 344666766433 456666766665555555555553 334445544444 4456667644433
No 87
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=86.63 E-value=43 Score=34.78 Aligned_cols=166 Identities=8% Similarity=-0.028 Sum_probs=81.1
Q ss_pred CHHH-HHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHH
Q 011392 125 QWFE-VLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 203 (487)
Q Consensus 125 ~y~~-l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~ 203 (487)
+..| +++|..-++.|.+..+..++-.+.-.+.+++..+..+..+. ..+..+-+++..+++...+.+.-++..+|...+
T Consensus 105 T~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~-gv~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~ 183 (529)
T COG4147 105 TFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLL-GVPYHVGVVIGGILMMVYVVLGGMKATTWVQII 183 (529)
T ss_pred chHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-CCCceeehhhHhHHHHHHHHhcchhhhhHHHHH
Confidence 5677 45565556666654444333333334455555555544332 344455555666666677777778888887665
Q ss_pred HHHHHHHHHHH-HHHHHHh-cCCCC----------CC----CCCC----cccHHHHHHHHHHHHHHhccccchHHHH-hh
Q 011392 204 GLGMTTYTAWY-LTIAAVV-HGQVE----------GA----SHTA----PTKLVLYFTGATNILYTFGGHAVTVEIM-HA 262 (487)
Q Consensus 204 ~~~~~~~~~~~-~~~~~i~-~g~~~----------~~----~~~~----~~~~~~~~~~~~~~~faf~~~~~i~~i~-~~ 262 (487)
--+..+....+ .++.... .+.+. .. +..+ ..+..++ ++...-=..|..-.|.+. +-
T Consensus 184 qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~---isl~~aLm~GTAgLPHil~RF 260 (529)
T COG4147 184 QAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDF---ISLGFALMVGTAGLPHILMRF 260 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHH---HHHHHHHHHccCCCCeEEEEE
Confidence 54433221111 1111222 11110 00 0000 1222233 222211122333344332 21
Q ss_pred --ccCccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011392 263 --MWKPQKFKYIYLFATLYVFTLTIPSATAVYWS 294 (487)
Q Consensus 263 --m~~p~~~~~~~~~a~~~~~~~y~~~g~~gy~~ 294 (487)
-.+-|+-++.+.++..+...+|+..-+.|+.+
T Consensus 261 fTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 261 FTVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred EecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12235667788899999999999877777543
No 88
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=86.42 E-value=56 Score=35.90 Aligned_cols=43 Identities=23% Similarity=0.376 Sum_probs=28.7
Q ss_pred HHHhHhhhhh-cchHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Q 011392 59 CASNQVAQVL-LTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLI 101 (487)
Q Consensus 59 l~~~~iG~Gi-L~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll 101 (487)
.+-.++|.=. +=|-+..--+|...|.++.+++++.++.+..=+
T Consensus 124 clQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISm 167 (1075)
T KOG2082|consen 124 CLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISM 167 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444322 356677778899889888888888777776444
No 89
>PLN00151 potassium transporter; Provisional
Probab=85.71 E-value=65 Score=35.95 Aligned_cols=18 Identities=22% Similarity=0.229 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 011392 81 LSGILLQIFYGFLGSWTA 98 (487)
Q Consensus 81 ~~g~i~l~~~~~ls~~s~ 98 (487)
+.|++.+++.++.-.-+.
T Consensus 140 IlGvLSLIfWtLtLiv~i 157 (852)
T PLN00151 140 VLGALSLVLYTLILIPLA 157 (852)
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 468888887666654443
No 90
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=84.00 E-value=27 Score=35.50 Aligned_cols=66 Identities=15% Similarity=0.076 Sum_probs=51.1
Q ss_pred CHHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhc
Q 011392 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVF 190 (487)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~ 190 (487)
-..+++++.||+.|..+..+...+-|+..++..+..+++....+.+..+.+.|.++..++...++.
T Consensus 256 ~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k~~y~~~v~~~~l~s~~ia~ 321 (378)
T TIGR00796 256 ILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPKLSYKTWVIVFTLFSFIVAN 321 (378)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 366889999999999999888888899999888888888776654456667777666665555544
No 91
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=83.96 E-value=70 Score=34.87 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=25.5
Q ss_pred HHhhccCcc-chhHHHHHHHHHHHHHHHHHHHHH
Q 011392 259 IMHAMWKPQ-KFKYIYLFATLYVFTLTIPSATAV 291 (487)
Q Consensus 259 i~~~m~~p~-~~~~~~~~a~~~~~~~y~~~g~~g 291 (487)
.-.|+|+|+ ..++-...++..++++|+++.++-
T Consensus 316 MSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 316 MSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred cCccccCccccCCccchHHHHHHHHHHHHHHHHh
Confidence 345889994 578877889999999999876544
No 92
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=83.72 E-value=57 Score=33.66 Aligned_cols=74 Identities=12% Similarity=0.120 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhc-CCC--------CCCCCCCcccHHHHHHHHHHHHHHhc-cccchHHHHhhccCc
Q 011392 197 YRIWSFLGLGMTTYTAWYLTIAAVVH-GQV--------EGASHTAPTKLVLYFTGATNILYTFG-GHAVTVEIMHAMWKP 266 (487)
Q Consensus 197 l~~~s~~~~~~~~~~~~~~~~~~i~~-g~~--------~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~p 266 (487)
+...+-+-+...++..+++++.++.. |.. ||.+.- .+......++|...|+.. |-..+..--+.++|+
T Consensus 167 IEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l--~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~ 244 (439)
T COG0733 167 IEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKL--TDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKK 244 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHc--CchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 66666666555554445555666552 222 222211 223456778888888865 445566666678877
Q ss_pred cchhHH
Q 011392 267 QKFKYI 272 (487)
Q Consensus 267 ~~~~~~ 272 (487)
++..+.
T Consensus 245 ~~l~~s 250 (439)
T COG0733 245 SDLVSS 250 (439)
T ss_pred cchhhh
Confidence 887653
No 93
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=82.17 E-value=38 Score=34.89 Aligned_cols=154 Identities=17% Similarity=0.142 Sum_probs=79.4
Q ss_pred eecCccHHHHHHHHHHhHhhhhhc-chHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011392 46 LWHGGSAWDAWFSCASNQVAQVLL-TLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVI 124 (487)
Q Consensus 46 ~~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 124 (487)
..++.|.+|+...-+.+.+|+|=+ +..-|.+-.|-. .++.+-+++++..-+.+.=..+...|+++.+. + +|+....
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPG-AvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~-G-~~~GGP~ 135 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPG-AVFWMWIVALFGMATKFAESTLAQKYRVKDKD-G-EYRGGPA 135 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCc-cHHHHHHHHHHHHHHHHHHHHHHhheeEeCCC-C-CCcCChH
Confidence 345688999999999999999966 788888877743 67777777777666655322222455543321 1 2322111
Q ss_pred CHHHHHHhhhCcchhhHHHHHHHHHHHH--HHHHHHHHhhhhhhhccccccchhHHH-HHHHHHhhhhccCCCcchhHHH
Q 011392 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLF--GSVIQLIACASNIYYINDRLDKRTWTY-IFGACCATTVFIPSFHNYRIWS 201 (487)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g--~~~~~li~~~~~~~~~~~~~~~~~~~i-i~~~i~~pl~~l~~l~~l~~~s 201 (487)
- -.++-+|.+|.-....+..+..+| .+..+--...+.+ ...++...|.. +...++.-+..+..++++..++
T Consensus 136 y---Yi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~---~~af~~~~~~~gi~la~l~~~VI~GGi~rIa~v~ 209 (452)
T COG1115 136 Y---YIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASAL---ANAFGIPPLVTGIVLALLVALVIFGGIKRIAKVS 209 (452)
T ss_pred H---HHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHcchHHHHHHH
Confidence 1 223445544433322222222222 2222222222222 22233223322 3333444455567777787777
Q ss_pred HHHHHHH
Q 011392 202 FLGLGMT 208 (487)
Q Consensus 202 ~~~~~~~ 208 (487)
..-+..+
T Consensus 210 ~~vVPfM 216 (452)
T COG1115 210 SKVVPFM 216 (452)
T ss_pred HHHHHHH
Confidence 6555543
No 94
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=72.68 E-value=1.2e+02 Score=31.38 Aligned_cols=43 Identities=12% Similarity=0.000 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHhHhhhhhcchHHHHH-hhc--hhHHHHHHHHHHHH
Q 011392 51 SAWDAWFSCASNQVAQVLLTLPYSFS-QMG--MLSGILLQIFYGFL 93 (487)
Q Consensus 51 s~~~a~~~l~~~~iG~GiL~LP~af~-~~G--~~~g~i~l~~~~~l 93 (487)
..+..-+.+..-..|+|=|=.|-..- ++| |.++.+.+++.+..
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~Vg 54 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVG 54 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34556678889999999999997765 555 77777777665544
No 95
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=68.79 E-value=19 Score=37.21 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=50.8
Q ss_pred HHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhcc
Q 011392 126 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFI 191 (487)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l 191 (487)
..+++++.+|+.|..+..+...+-|+-.++.-...+++..+...+..+.+.|.+++.++...++.+
T Consensus 263 L~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kisY~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 263 LSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKISYKVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh
Confidence 567888999999999888877777777777777788887776555677788887777766666543
No 96
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=64.96 E-value=1.7e+02 Score=30.09 Aligned_cols=139 Identities=17% Similarity=0.213 Sum_probs=81.2
Q ss_pred cchhHH-HHHHHHHHH-HHHHHHHHHHHHhhccccccccccccCCCCchHHHHHHHHHHH----HHHHHHHhhhccHHHH
Q 011392 267 QKFKYI-YLFATLYVF-TLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLI----HQFITFGFACTPLYFV 340 (487)
Q Consensus 267 ~~~~~~-~~~a~~~~~-~~y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~i~~~~~~i----~~~~s~pl~~~p~~~~ 340 (487)
++-.+. ...+..+.. .-.++....++..|+.-- ++...++-+..-....-+-... +...+++.+.++....
T Consensus 220 ~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~---~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai 296 (415)
T COG0814 220 RKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFG---SLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAI 296 (415)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 444553 444444443 345555666666665542 2222222111111222222221 1235678888888877
Q ss_pred HHHHHccC----C------Cc-ch-hhhhhhhhhHHHHHHHHHHhcCc-hhhHHHhhhhHHHhHHHHhhhHHHHHHHhhh
Q 011392 341 WEKVIGMH----D------TK-SI-CLRALARLPVVIPIWFLAIIFPF-FGPINSAVGALLVSFTVYIIPSLAHMLTYRK 407 (487)
Q Consensus 341 ~~~~~~~~----~------~~-~~-~~~~~~~~~~~~~~~~lA~~vP~-~~~vl~lvGa~~~~~l~filP~l~~l~~~~~ 407 (487)
....++.. + ++ +. ..|..........+.+.+...|. +....+..|++.....+-++|.+++++-++.
T Consensus 297 ~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~ 376 (415)
T COG0814 297 ATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKL 376 (415)
T ss_pred HHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66655421 1 11 11 11555666777788888989885 8888899999999999999999999987654
Q ss_pred H
Q 011392 408 A 408 (487)
Q Consensus 408 ~ 408 (487)
.
T Consensus 377 ~ 377 (415)
T COG0814 377 I 377 (415)
T ss_pred c
Confidence 4
No 97
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=56.45 E-value=2.4e+02 Score=28.97 Aligned_cols=43 Identities=16% Similarity=0.078 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHhHhhhhhcchHHHHH-hhc--hhHHHHHHHHHHHH
Q 011392 51 SAWDAWFSCASNQVAQVLLTLPYSFS-QMG--MLSGILLQIFYGFL 93 (487)
Q Consensus 51 s~~~a~~~l~~~~iG~GiL~LP~af~-~~G--~~~g~i~l~~~~~l 93 (487)
..+..=+.+..-..|+|=|=.|-..- ++| |.++.+-+++.|..
T Consensus 6 ~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVg 51 (431)
T COG1114 6 DIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVG 51 (431)
T ss_pred hHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhh
Confidence 44555577888899999999987654 344 55566666554443
No 98
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=54.22 E-value=2e+02 Score=30.01 Aligned_cols=132 Identities=18% Similarity=0.155 Sum_probs=60.3
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCc-hHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 011392 264 WKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKN-RWRDAAVILMLIHQFITFGFACTPLYFVWE 342 (487)
Q Consensus 264 ~~p~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~~~~~-~~~~i~~~~~~i~~~~s~pl~~~p~~~~~~ 342 (487)
||+++.++....+...++.+-..+++.-|. |++.. ..-+.++ .....+.-.+.+.. ..+|. ........
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~-f~~~i------~~lF~~~~~v~~~~~~~l~i~~-~~~~~--~~~~~v~~ 380 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLLL-FREPI------ISLFTTDPEVIALAVILLLIAA-LFQPF--DGIQFVLS 380 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH------HHHHCCCHHHHHHHHHHHHHHH-HHHHH--HHHHHHHH
Confidence 566777887777777777766656554443 34433 2222222 22222222211111 11111 12333333
Q ss_pred HHHccCCCcchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHHHHHHhhhH
Q 011392 343 KVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKA 408 (487)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~~l~~~~~~ 408 (487)
..++ ...+.+...+..-...+.+-.-++...+.+. ++..|--.+..+..++-.++.....+++
T Consensus 381 g~lr-g~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~--~g~~Gvw~~~~~~~~~~~~~~~~~~~~~ 443 (455)
T COG0534 381 GVLR-GAGDAKIPFIISLLSYWGFRLPLAYLLGFFF--LGLAGVWIGFPLSLILRAILLLLRLRRG 443 (455)
T ss_pred HHHH-hcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3332 1112233333322223333333344444332 7777777777777777776666655544
No 99
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=52.30 E-value=3.2e+02 Score=29.10 Aligned_cols=34 Identities=3% Similarity=0.087 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhc-cccchHHHHhhccCccchhHH
Q 011392 239 YFTGATNILYTFG-GHAVTVEIMHAMWKPQKFKYI 272 (487)
Q Consensus 239 ~~~~~~~~~faf~-~~~~i~~i~~~m~~p~~~~~~ 272 (487)
...|++...|+.+ |.+.+...-+.+++.++..+.
T Consensus 251 W~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n~~~~ 285 (523)
T PF00209_consen 251 WIAALGQVFFSLSIGFGIMITYGSYNKFKNNIFRD 285 (523)
T ss_dssp HHHHHHHHHHHTTTTSSHHHHHHTTS-TTS-SHHH
T ss_pred HHHHHHHHhhccCCCcceEEEEcCcCCCCcccccc
Confidence 4678888999987 456666666677777776553
No 100
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=47.62 E-value=3.5e+02 Score=28.20 Aligned_cols=135 Identities=16% Similarity=0.032 Sum_probs=68.6
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCC-chHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 011392 263 MWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPK-NRWRDAAVILMLIHQFITFGFACTPLYFVW 341 (487)
Q Consensus 263 m~~p~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~~~~-~~~~~i~~~~~~i~~~~s~pl~~~p~~~~~ 341 (487)
-||+++.+++...+..+..++-+++++..+.. .++++..+.. +.....+.--+.+......+....-....+
T Consensus 86 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~ 158 (455)
T COG0534 86 AGDRKKAKRVLGQGLLLALLLGLLLAILLLFF-------AEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGI 158 (455)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888888777777666554 2345555553 223333333333333333333333333333
Q ss_pred HHHHccCCCcchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHHHHHHhhhH
Q 011392 342 EKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKA 408 (487)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~~l~~~~~~ 408 (487)
.+-.++. +....-..+..++.++---+-+... ++. +++.||--.+.++..+..++.+....++
T Consensus 159 lr~~G~~--~~~m~~~~~~~~lNivln~llI~g~-~g~-lGv~GAA~AT~ia~~~~~~~~~~~~~~~ 221 (455)
T COG0534 159 LRGLGDT--KTPMYILLLGNLLNIVLNYLLIFGL-FGG-LGVAGAALATVIARWIGALLLLIYLLRK 221 (455)
T ss_pred HHhcCCC--chhHHHHHHHHHHHHHhhHHHHHhc-ccc-ccchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333211 1111111112222222111111111 333 9999999999999999887777665443
No 101
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.31 E-value=1.5e+02 Score=30.72 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=25.9
Q ss_pred HHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011392 59 CASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYR 109 (487)
Q Consensus 59 l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~ 109 (487)
+..+.+|+|.--... ...++++.+++.+-.+=+-++..+..-|.
T Consensus 294 Lfsa~lGsG~Qlf~l-------~~~ii~~Alvg~fy~~rGal~saaI~vYA 337 (593)
T KOG1277|consen 294 LFSAVLGSGAQLFTL-------VLIIIMLALVGVFYTERGALLSAAIVVYA 337 (593)
T ss_pred HHHHHhccccchHHH-------HHHHHHHHHHhhhhccchHHHHHHHHHHH
Confidence 888899998543332 24566777777665554445444433443
No 102
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=44.86 E-value=3.4e+02 Score=27.95 Aligned_cols=65 Identities=20% Similarity=0.175 Sum_probs=48.3
Q ss_pred HHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhc
Q 011392 126 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVF 190 (487)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~ 190 (487)
..+..++.||+.|..+...+..+-|.-.++.-+..|+|......+..+...|..++.++...++.
T Consensus 265 L~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~SY~~~v~if~i~sflvan 329 (431)
T COG1114 265 LSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKLSYKTWVIIFTLISFLVAN 329 (431)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 56678899999999887777777777777777778888776666667777787776665555443
No 103
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=41.12 E-value=96 Score=32.18 Aligned_cols=65 Identities=18% Similarity=0.093 Sum_probs=46.8
Q ss_pred HHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhcc
Q 011392 126 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFI 191 (487)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l 191 (487)
.....++.+|+.++.+..+...+-|+-.++.-...+++.++...+ .+.+.|.+++.++..+++.+
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHh
Confidence 335677889999999888777777777777777677766554333 66677777777777777654
No 104
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=40.63 E-value=90 Score=30.92 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhcc--ccchHHHHh----------hccCccchhHH---H---HHHHHHHHHHHHHHHHHHHHhhccc
Q 011392 237 VLYFTGATNILYTFGG--HAVTVEIMH----------AMWKPQKFKYI---Y---LFATLYVFTLTIPSATAVYWSFGDQ 298 (487)
Q Consensus 237 ~~~~~~~~~~~faf~~--~~~i~~i~~----------~m~~p~~~~~~---~---~~a~~~~~~~y~~~g~~gy~~fG~~ 298 (487)
.+.+..+.+.+|+|.. ....||+.+ .|+++|+..|. + ..+...+.++=....+.|.+.||+-
T Consensus 145 p~LlgpIaVaAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~ekiiFpivv~~~~~ll~P~a~pLig~Lm~Gnl 224 (360)
T PF03977_consen 145 PHLLGPIAVAAYSYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTEKIIFPIVVTILVGLLLPSAAPLIGMLMFGNL 224 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 3567888888999874 455677776 45544444332 2 2223333333344688999999999
Q ss_pred cccccccccCCCC---chHHHHHHHHHHHH
Q 011392 299 LLNHSNAFSLLPK---NRWRDAAVILMLIH 325 (487)
Q Consensus 299 ~~~~~~il~~~~~---~~~~~i~~~~~~i~ 325 (487)
.++ +.+.+.+.+ +.+.+++.++..+.
T Consensus 225 ~rE-sgv~~rLs~taqn~l~nivTi~LGl~ 253 (360)
T PF03977_consen 225 LRE-SGVVERLSKTAQNELMNIVTIFLGLT 253 (360)
T ss_pred HHH-hccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 985 446665653 23344444444443
No 105
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=40.16 E-value=4.6e+02 Score=27.45 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=41.3
Q ss_pred CcchhhhhhhhhhHHHHHHHHHHhcC--chhhHHHhhhhHHHhHHHHhhhHHHHHHHhhh
Q 011392 350 TKSICLRALARLPVVIPIWFLAIIFP--FFGPINSAVGALLVSFTVYIIPSLAHMLTYRK 407 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~lA~~vP--~~~~vl~lvGa~~~~~l~filP~l~~l~~~~~ 407 (487)
.++|.+|...|.+..+++.++++... +++.+.++.--+-+..+=|..=+++++.-.|+
T Consensus 353 l~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r~ 412 (503)
T KOG1291|consen 353 LPPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTFTSSRK 412 (503)
T ss_pred chHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhhhccHH
Confidence 46788899999999999999988865 57777777666555555555445666655444
No 106
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=38.48 E-value=5e+02 Score=27.43 Aligned_cols=20 Identities=15% Similarity=-0.042 Sum_probs=12.7
Q ss_pred HHHHHhccccchHHHHhhcc
Q 011392 245 NILYTFGGHAVTVEIMHAMW 264 (487)
Q Consensus 245 ~~~faf~~~~~i~~i~~~m~ 264 (487)
+....|..-..+|++++.+.
T Consensus 413 ~w~~~fiv~~~fp~l~~~~g 432 (485)
T KOG0569|consen 413 NWLSNFIVGFAFPPLQNVIG 432 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34445555556788888775
No 107
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=37.60 E-value=4.6e+02 Score=27.97 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=26.2
Q ss_pred CHHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011392 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNI 165 (487)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~ 165 (487)
...++-....||++......+.++..++.+.+-++..+..+
T Consensus 326 p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v 366 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLV 366 (550)
T ss_pred hHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHH
Confidence 36677778899999866555555555666555555444333
No 108
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=35.83 E-value=31 Score=23.26 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011392 272 IYLFATLYVFTLTIPSATAVYWSFGDQL 299 (487)
Q Consensus 272 ~~~~a~~~~~~~y~~~g~~gy~~fG~~~ 299 (487)
+..++..+..++..+.|..-|.+||+..
T Consensus 7 A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 7 ALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred hHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 4556667777777788888899999875
No 109
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=34.24 E-value=1.4e+02 Score=23.16 Aligned_cols=56 Identities=7% Similarity=-0.056 Sum_probs=33.8
Q ss_pred HHHHHHHHhccccchHHHHhhccCccch-hHHH-HHHHHHHHHHHHHHHHHHHHhhcccc
Q 011392 242 GATNILYTFGGHAVTVEIMHAMWKPQKF-KYIY-LFATLYVFTLTIPSATAVYWSFGDQL 299 (487)
Q Consensus 242 ~~~~~~faf~~~~~i~~i~~~m~~p~~~-~~~~-~~a~~~~~~~y~~~g~~gy~~fG~~~ 299 (487)
..|++..+-+|...+.++.+.-.+|.+. .|++ .++++ .-.-+.+|++.|..||.-.
T Consensus 16 i~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSii~FI--lG~vl~lGilifs~y~~C~ 73 (91)
T PHA02680 16 ICGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSVTCFI--VGAVLLLGLFVFSMYRKCS 73 (91)
T ss_pred HHHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHHH--HHHHHHHHHHHHHHhcccC
Confidence 3566666677777777777766566443 3333 33333 3334556899999998444
No 110
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=31.99 E-value=38 Score=22.60 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q 011392 274 LFATLYVFTLTIPSATAVYWSFGDQL 299 (487)
Q Consensus 274 ~~a~~~~~~~y~~~g~~gy~~fG~~~ 299 (487)
..+..+..++..+.|...|.+||+..
T Consensus 6 ~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 6 VLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 45566667777778888899999775
No 111
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=30.14 E-value=6.8e+02 Score=26.46 Aligned_cols=131 Identities=10% Similarity=0.074 Sum_probs=63.1
Q ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHh--cC--CCCC--CCCCCcccHHHHHHHHHHHHHHhc-
Q 011392 179 YIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVV--HG--QVEG--ASHTAPTKLVLYFTGATNILYTFG- 251 (487)
Q Consensus 179 ii~~~i~~pl~~l~~l~~l~~~s~~~~~~~~~~~~~~~~~~i~--~g--~~~~--~~~~~~~~~~~~~~~~~~~~faf~- 251 (487)
+++=++.+|..+.| .++++.+-....+.+...++.+++..+. +| ..-+ .+..+......++.++...+-.|.
T Consensus 191 fIFwv~s~~~~~~~-p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fst 269 (572)
T KOG2466|consen 191 FIFWVASLPFYWFP-PYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFST 269 (572)
T ss_pred HHHHHHhhheeecc-HHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccch
Confidence 33444556665554 4666666555544444333333333332 33 2111 111112222334333332222232
Q ss_pred cccchHHHHhhccCccchhHHH----HHHHHHHHHHHHHHHHHHHHhhccccccccccccCCC
Q 011392 252 GHAVTVEIMHAMWKPQKFKYIY----LFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLP 310 (487)
Q Consensus 252 ~~~~i~~i~~~m~~p~~~~~~~----~~a~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~~~ 310 (487)
...|.|..-+--|+|.+-...- -+.+.+..++=++.+..++..||.+.=+.-++++++-
T Consensus 270 l~~N~pDFsRF~ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l 332 (572)
T KOG2466|consen 270 LIVNAPDFSRFAKSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWL 332 (572)
T ss_pred hhccCchhHhhcCCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHh
Confidence 3467888888888885543322 2333333444444566779999998743225666553
No 112
>CHL00020 psbN photosystem II protein N
Probab=30.01 E-value=32 Score=22.88 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011392 273 YLFATLYVFTLTIPSATAVYWSFGDQL 299 (487)
Q Consensus 273 ~~~a~~~~~~~y~~~g~~gy~~fG~~~ 299 (487)
...+..+..++..+.|..-|.+||+..
T Consensus 5 ~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 5 TLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhHHHHHHHHHHHhhheeeeeccCCch
Confidence 445666777777778888899999875
No 113
>PRK01766 multidrug efflux protein; Reviewed
Probab=28.18 E-value=5.6e+02 Score=26.32 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=17.2
Q ss_pred HHhhhhHHHhHHHHhhhHHHHHHHhhh
Q 011392 381 NSAVGALLVSFTVYIIPSLAHMLTYRK 407 (487)
Q Consensus 381 l~lvGa~~~~~l~filP~l~~l~~~~~ 407 (487)
+++.|...+..+...+..++.+...++
T Consensus 415 ~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 415 MGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred CCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 456677677777777777666555443
No 114
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=28.03 E-value=3.8e+02 Score=28.60 Aligned_cols=11 Identities=18% Similarity=-0.016 Sum_probs=8.1
Q ss_pred HHHhHhhhhhc
Q 011392 59 CASNQVAQVLL 69 (487)
Q Consensus 59 l~~~~iG~GiL 69 (487)
++...+|+|+=
T Consensus 263 lls~lvG~G~Q 273 (521)
T PF02990_consen 263 LLSALVGTGIQ 273 (521)
T ss_pred HHHhHhcchhh
Confidence 77788888753
No 115
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.84 E-value=1.5e+02 Score=22.05 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 011392 432 NIFVVVWVFVVGFGFGGWASVTNFVRQVDS 461 (487)
Q Consensus 432 ~~~~i~~~~~~~~v~Gt~~ai~~ii~~~~~ 461 (487)
.+++++++.+.|+..|.+-|-+.+-.++.+
T Consensus 6 ail~ivl~ll~G~~~G~fiark~~~k~lk~ 35 (71)
T COG3763 6 AILLIVLALLAGLIGGFFIARKQMKKQLKD 35 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444456677778999999988877765
No 116
>PRK01844 hypothetical protein; Provisional
Probab=26.67 E-value=1.5e+02 Score=22.16 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 011392 433 IFVVVWVFVVGFGFGGWASVTNFVRQVDS 461 (487)
Q Consensus 433 ~~~i~~~~~~~~v~Gt~~ai~~ii~~~~~ 461 (487)
+++++++.+.|.+.|.|.+-+..-.+++.
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456777788888888888777654
No 117
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=25.72 E-value=1.2e+02 Score=29.94 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhcc--ccchHHHHh----------hccCccch---hHHH---HHHHHHHHHHHHHHHHHHHHhhccc
Q 011392 237 VLYFTGATNILYTFGG--HAVTVEIMH----------AMWKPQKF---KYIY---LFATLYVFTLTIPSATAVYWSFGDQ 298 (487)
Q Consensus 237 ~~~~~~~~~~~faf~~--~~~i~~i~~----------~m~~p~~~---~~~~---~~a~~~~~~~y~~~g~~gy~~fG~~ 298 (487)
.+.+..+.+.+|+|.. ....||+.+ .|+++|+. .|.+ ..+...+.++=....+.|.+.||+-
T Consensus 145 p~Llg~IaVAAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~eKi~Fpivv~~i~~ll~P~a~pLig~Lm~Gnl 224 (354)
T TIGR01109 145 PELLAAIAVAAYSYMALVPIIQPPIMKALTSEKERKIRMKQLRTVSKREKILFPIVLLLLVALLIPKALPLVGMLMFGNL 224 (354)
T ss_pred hHHHHHHHHHHHHHHHHHhcccchHHHhhcChHHhccccCCCCCcCccchhHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 3567888888999874 345677766 34443332 2222 2333333444445688999999999
Q ss_pred cccccccccCCCC
Q 011392 299 LLNHSNAFSLLPK 311 (487)
Q Consensus 299 ~~~~~~il~~~~~ 311 (487)
.++ +.+.+.+.+
T Consensus 225 lrE-sGv~~rl~~ 236 (354)
T TIGR01109 225 MRE-SGVVERLSK 236 (354)
T ss_pred HHH-hccHHHHHH
Confidence 975 446665553
No 118
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=24.61 E-value=1.4e+02 Score=19.06 Aligned_cols=16 Identities=19% Similarity=0.544 Sum_probs=12.0
Q ss_pred hchhHHHHHHHHHHHH
Q 011392 78 MGMLSGILLQIFYGFL 93 (487)
Q Consensus 78 ~G~~~g~i~l~~~~~l 93 (487)
.|+++|.+-..+.|++
T Consensus 7 ~GiVLGlipiTl~Glf 22 (37)
T PRK00665 7 CGIVLGLIPVTLAGLF 22 (37)
T ss_pred hhHHHHhHHHHHHHHH
Confidence 5888888877776665
No 119
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=24.38 E-value=1.2e+02 Score=30.38 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhcc--ccchHHHHh----------hccCccch---hHHH---HHHHHHHHHHHHHHHHHHHHhhccc
Q 011392 237 VLYFTGATNILYTFGG--HAVTVEIMH----------AMWKPQKF---KYIY---LFATLYVFTLTIPSATAVYWSFGDQ 298 (487)
Q Consensus 237 ~~~~~~~~~~~faf~~--~~~i~~i~~----------~m~~p~~~---~~~~---~~a~~~~~~~y~~~g~~gy~~fG~~ 298 (487)
++.+.++.+.+|+|.. ...-||+.+ .|+++|+. .|.+ .....++.++=....+.|.+.||+-
T Consensus 216 P~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~P~a~PLiGmlmfGNl 295 (433)
T PRK15475 216 PELLGAIAVAAYSYMALVPLIQPPIMKALTTETERKIRMVQLRTVSKREKILFPVVLLLLVALLLPDAAPLLGMFCFGNL 295 (433)
T ss_pred hHhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3467888888999874 345667766 34443332 2322 2333333334444688999999999
Q ss_pred cccccccccCCCC
Q 011392 299 LLNHSNAFSLLPK 311 (487)
Q Consensus 299 ~~~~~~il~~~~~ 311 (487)
.++ +.+.+.+.+
T Consensus 296 lrE-sGVv~rLs~ 307 (433)
T PRK15475 296 MRE-SGVVERLSD 307 (433)
T ss_pred HHH-hccHHHHHH
Confidence 875 446666653
No 120
>PHA03048 IMV membrane protein; Provisional
Probab=23.73 E-value=2.5e+02 Score=21.95 Aligned_cols=56 Identities=13% Similarity=0.003 Sum_probs=34.0
Q ss_pred HHHHHHHHHhccccchHHHHhhccCccchhHHH-HHHHHHHHHHHHHHHHHHHHhhcccc
Q 011392 241 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIY-LFATLYVFTLTIPSATAVYWSFGDQL 299 (487)
Q Consensus 241 ~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~-~~a~~~~~~~y~~~g~~gy~~fG~~~ 299 (487)
...|++..+-+|...+.++.+. |.+..-.|++ .+++ ..-.-+.+|++-|..||...
T Consensus 15 li~GIiLL~~aCIfAfidfsK~-k~~~~~wRalsii~F--Ilgivl~lG~~ifsmy~r~C 71 (93)
T PHA03048 15 LIGGIILLAASCIFAFVDFSKN-KATVTVWRALSGIAF--VLGIVMTIGMLIYSMWGRYC 71 (93)
T ss_pred HHHHHHHHHHHHHHhhhhhhcC-CCcchhHHHHHHHHH--HHHHHHHHHHHHHHHHhccc
Confidence 3456677777777777777776 4333333333 3333 33344567999999999665
No 121
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=23.24 E-value=1.4e+02 Score=30.11 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhcc--ccchHHHHh----------hccCccch---hHHH---HHHHHHHHHHHHHHHHHHHHhhccc
Q 011392 237 VLYFTGATNILYTFGG--HAVTVEIMH----------AMWKPQKF---KYIY---LFATLYVFTLTIPSATAVYWSFGDQ 298 (487)
Q Consensus 237 ~~~~~~~~~~~faf~~--~~~i~~i~~----------~m~~p~~~---~~~~---~~a~~~~~~~y~~~g~~gy~~fG~~ 298 (487)
++.+.++.+.+|+|.. ...-||+.+ .|+++|+. .|.+ .....++.++=....+.|.+.||+-
T Consensus 216 P~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~P~a~PLiGmlmfGNl 295 (433)
T PRK15476 216 PELLGAIAVAAYSYMALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPVVLLLLVALLLPDAAPLLGMFCFGNL 295 (433)
T ss_pred hHhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3467888888999874 345667766 34433332 2322 2333333333444688999999999
Q ss_pred cccccccccCCCC
Q 011392 299 LLNHSNAFSLLPK 311 (487)
Q Consensus 299 ~~~~~~il~~~~~ 311 (487)
.++ +.+.+.+.+
T Consensus 296 lrE-sGVv~rLs~ 307 (433)
T PRK15476 296 MRE-SGVVERLSD 307 (433)
T ss_pred HHH-hccHHHHHH
Confidence 875 446665653
No 122
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=23.17 E-value=1.4e+02 Score=30.10 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhcc--ccchHHHHh----------hccCccch---hHHH---HHHHHHHHHHHHHHHHHHHHhhccc
Q 011392 237 VLYFTGATNILYTFGG--HAVTVEIMH----------AMWKPQKF---KYIY---LFATLYVFTLTIPSATAVYWSFGDQ 298 (487)
Q Consensus 237 ~~~~~~~~~~~faf~~--~~~i~~i~~----------~m~~p~~~---~~~~---~~a~~~~~~~y~~~g~~gy~~fG~~ 298 (487)
++.+.++.+.+|+|.. ...-||+.+ .|+++|+. .|.+ .....++.++=....+.|.+.||+-
T Consensus 216 P~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~P~a~PLiGmlmfGNl 295 (433)
T PRK15477 216 PELLGAIAVAAYSYMALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPVVLLLLVALLLPDAAPLLGMFCFGNL 295 (433)
T ss_pred hHhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3467888888999874 345667766 34433332 2322 2333333333444688999999999
Q ss_pred cccccccccCCCC
Q 011392 299 LLNHSNAFSLLPK 311 (487)
Q Consensus 299 ~~~~~~il~~~~~ 311 (487)
.++ +.+.+.+.+
T Consensus 296 lrE-sGVv~rLs~ 307 (433)
T PRK15477 296 MRE-SGVVERLSD 307 (433)
T ss_pred HHH-hccHHHHHH
Confidence 875 446665653
No 123
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=22.06 E-value=1.7e+02 Score=18.65 Aligned_cols=16 Identities=19% Similarity=0.588 Sum_probs=11.7
Q ss_pred hchhHHHHHHHHHHHH
Q 011392 78 MGMLSGILLQIFYGFL 93 (487)
Q Consensus 78 ~G~~~g~i~l~~~~~l 93 (487)
.|+++|.+-..+.|++
T Consensus 7 ~GiVLGlipvTl~Glf 22 (37)
T CHL00008 7 FGIVLGLIPITLAGLF 22 (37)
T ss_pred hhHHHHhHHHHHHHHH
Confidence 5788888777776655
No 124
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=22.04 E-value=1.8e+02 Score=25.97 Aligned_cols=16 Identities=13% Similarity=0.029 Sum_probs=8.8
Q ss_pred HHHhHhhhhhcchHHH
Q 011392 59 CASNQVAQVLLTLPYS 74 (487)
Q Consensus 59 l~~~~iG~GiL~LP~a 74 (487)
.+-.++|-+++++|..
T Consensus 81 ~i~~~i~l~~~~~~~v 96 (181)
T PF08006_consen 81 AILAIIGLGLLSFIIV 96 (181)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334556666666554
No 125
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=22.03 E-value=8e+02 Score=24.47 Aligned_cols=30 Identities=13% Similarity=0.026 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011392 270 KYIYLFATLYVFTLTIPSATAVYWSFGDQL 299 (487)
Q Consensus 270 ~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~ 299 (487)
.+++..+...+.-.-..+...||.......
T Consensus 47 ~~al~~tll~alp~pl~~~~~g~~L~~~~~ 76 (340)
T PF12794_consen 47 PRALLLTLLLALPLPLLLLAIGYLLQFAAW 76 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456777777787778888888888875543
No 126
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=21.83 E-value=4.8e+02 Score=21.83 Aligned_cols=49 Identities=22% Similarity=0.305 Sum_probs=31.1
Q ss_pred HHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Q 011392 59 CASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYL-ISVLYVEYRSR 111 (487)
Q Consensus 59 l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~l-l~~~~~~~~~~ 111 (487)
.+-+.+|.+++..-- +.|-+.+.+..++.-+...|+..+ +.|+ ...++|
T Consensus 43 vllg~l~~~l~n~~~---~~g~~~a~vftivaif~~~ya~~lY~kRa-~~Ir~R 92 (126)
T COG5264 43 VLLGGLGFALYNSGD---RLGMISAYVFTIVAIFCGFYALMLYLKRA-VNIRQR 92 (126)
T ss_pred HHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhc
Confidence 334455666555544 788887888888777778888766 5554 344433
No 127
>PF13210 DUF4018: Domain of unknown function (DUF4018)
Probab=21.14 E-value=5.7e+02 Score=22.47 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=43.3
Q ss_pred CCCcchhhhhhhhhhHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHHHHHHhhhH
Q 011392 348 HDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKA 408 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~~l~~~~~~ 408 (487)
.+++....|...-+.+...+.++-..+|.+..+++++=-.-..-..|.+-+++-..--++.
T Consensus 91 ~NrnQqllRF~SIitIG~~S~l~~~vfPyIRlifsyi~~~VALGfGY~i~pl~saa~~kdt 151 (192)
T PF13210_consen 91 ANRNQQLLRFISIITIGIMSILLVPVFPYIRLIFSYIVEVVALGFGYAINPLFSAAELKDT 151 (192)
T ss_pred cCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHhcCccch
Confidence 3344556676666667777888888899999999887776666677777777766544433
No 128
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=20.85 E-value=6e+02 Score=26.44 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=22.8
Q ss_pred HhcCchhhHHHhhhhHHHhHHHHhhhHHH
Q 011392 372 IIFPFFGPINSAVGALLVSFTVYIIPSLA 400 (487)
Q Consensus 372 ~~vP~~~~vl~lvGa~~~~~l~filP~l~ 400 (487)
-.+|-++..--+.|-+++..+.+++=+.+
T Consensus 559 GliPWiDN~aHlfG~i~GLl~s~~~~PYi 587 (652)
T KOG2290|consen 559 GLIPWIDNWAHLFGTIFGLLTSIIFLPYI 587 (652)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhhccc
Confidence 56888888888889899888888764443
No 129
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=20.75 E-value=1.1e+02 Score=28.78 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHhcCchhhHHHhh---------hhHHHhHHHHhhhHHHHHHHhhhHhhhhhccCCCCCcccchhhHHHH
Q 011392 361 LPVVIPIWFLAIIFPFFGPINSAV---------GALLVSFTVYIIPSLAHMLTYRKASARQNAAEKPPFFLPSWTAMYAF 431 (487)
Q Consensus 361 ~~~~~~~~~lA~~vP~~~~vl~lv---------Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (487)
-..++.++++|..++.++-++.++ ||+++.-+.++= |..+.+...+- ..+-.. .+|+
T Consensus 160 d~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f-------~~y~n~---q~wL 225 (262)
T KOG4812|consen 160 DGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDF-------ESYFNG---QYWL 225 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeeccccc-------cccccc---chHH
Confidence 345555667777776666665553 777777776664 44444433211 111111 2456
Q ss_pred HHHHHHHHHHHHHhhhHH--HHHHHHHHhhc
Q 011392 432 NIFVVVWVFVVGFGFGGW--ASVTNFVRQVD 460 (487)
Q Consensus 432 ~~~~i~~~~~~~~v~Gt~--~ai~~ii~~~~ 460 (487)
.|+++++ |++-+.-|++ ..++..-+.++
T Consensus 226 wwi~~vl-G~ll~lr~~i~YikVrrm~~~~s 255 (262)
T KOG4812|consen 226 WWIFLVL-GLLLFLRGFINYIKVRRMEEKYS 255 (262)
T ss_pred HHHHHHH-HHHHHHHHHHhHHHHhhHHHHHh
Confidence 6777765 5555555654 44455544443
Done!