Query 011392
Match_columns 487
No_of_seqs 175 out of 1819
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 07:11:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.6 2.7E-12 9.2E-17 132.1 33.0 238 48-298 8-253 (445)
2 3gia_A Uncharacterized protein 99.4 2.4E-10 8.3E-15 117.4 29.0 236 48-297 6-249 (444)
3 4djk_A Probable glutamate/gamm 99.1 9.4E-08 3.2E-12 99.8 30.3 234 49-299 12-264 (511)
4 2jln_A MHP1; hydantoin, transp 98.7 2.4E-05 8.2E-10 81.3 30.1 143 125-268 89-239 (501)
5 3dh4_A Sodium/glucose cotransp 97.5 0.13 4.5E-06 53.4 32.7 146 47-207 19-166 (530)
6 2xq2_A Sodium/glucose cotransp 96.6 0.87 3E-05 47.9 29.3 142 50-206 51-194 (593)
7 2a65_A Leutaa, Na(+):neurotran 34.8 3.7E+02 0.013 27.2 37.8 110 187-298 180-309 (519)
8 1q90_G Cytochrome B6F complex 16.1 1.5E+02 0.0051 18.1 3.0 16 78-93 7-22 (37)
9 1vf5_G Protein PET G; photosyn 12.6 1.3E+02 0.0046 18.3 2.1 16 78-93 7-22 (37)
10 2ks1_B Epidermal growth factor 10.4 1.5E+02 0.005 19.1 1.9 13 379-391 13-25 (44)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.59 E-value=2.7e-12 Score=132.09 Aligned_cols=238 Identities=9% Similarity=-0.023 Sum_probs=142.2
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (487)
++.+.++.....+++++|+|++.+|...++.|.. +++..++.++++........+. .++.+..+ ...
T Consensus 8 r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el----~~~~p~~G--------g~y 74 (445)
T 3l1l_A 8 HKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKM----SFLDPSPG--------GSY 74 (445)
T ss_dssp CCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHH----HHHCCCTT--------THH
T ss_pred CcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHH----HccCCCCC--------Cch
Confidence 3468899999999999999999999999998864 6777777777766655444443 33332222 355
Q ss_pred HHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHH-H--HhhhhccCCCcchhHHHHHH
Q 011392 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGA-C--CATTVFIPSFHNYRIWSFLG 204 (487)
Q Consensus 128 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~-i--~~pl~~l~~l~~l~~~s~~~ 204 (487)
+..++.+||+...+..+...+........+....++.+....+..+......+... + ..-..-.+..+...++..+.
T Consensus 75 ~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~ 154 (445)
T 3l1l_A 75 AYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVA 154 (445)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 67789999998887766666654444445544444444333222222111111111 1 11112233334444444333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCC-CCC---CcccHHHHHHHHHHHHHHhccccchHHHHhhccCc-cchhHHHHHHHHH
Q 011392 205 LGMTTYTAWYLTIAAVVHGQVEGA-SHT---APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYIYLFATLY 279 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~i~~g~~~~~-~~~---~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~a~~~ 279 (487)
....+...+.+++..+...+.++. +.. ...++..++.++....|+|.|.........|+||| |+.+|.+..+..+
T Consensus 155 ~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~ 234 (445)
T 3l1l_A 155 TVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLI 234 (445)
T ss_dssp HHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHH
Confidence 332222111222222222121111 111 11234567888999999999999999999999999 6689999999999
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 011392 280 VFTLTIPSATAVYWSFGDQ 298 (487)
Q Consensus 280 ~~~~y~~~g~~gy~~fG~~ 298 (487)
+.++|+...+......+.+
T Consensus 235 ~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 235 AAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp HHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhcCCHH
Confidence 9999999888777666654
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.38 E-value=2.4e-10 Score=117.42 Aligned_cols=236 Identities=10% Similarity=0.013 Sum_probs=134.0
Q ss_pred cCccHHHHHHHHHHhHhhhhhcchH-HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCH
Q 011392 48 HGGSAWDAWFSCASNQVAQVLLTLP-YSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (487)
Q Consensus 48 ~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 126 (487)
+..+.++.....+++++|+|++.+| .+.+.+|- ..++..++.+++.........+ ..++.+..+ ..
T Consensus 6 r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~e----l~~~~P~~G--------g~ 72 (444)
T 3gia_A 6 KKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTK----LGAKIVSNA--------GP 72 (444)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHH----HHTTCCCTT--------TH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHH----HHhhCCCCC--------cH
Confidence 3478889999999999999999887 44556676 4666677766666665544444 333333212 35
Q ss_pred HHHHHhhhCcch--hhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHH-HH--hhhhccCCCcchhHHH
Q 011392 127 FEVLDGLLGPYW--KAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGA-CC--ATTVFIPSFHNYRIWS 201 (487)
Q Consensus 127 ~~l~~~~~G~~~--~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~-i~--~pl~~l~~l~~l~~~s 201 (487)
.+..++.+|+++ ..+ .....+........+....++.+....+..+...+..+... +. +-..-.+..+....+.
T Consensus 73 y~~~~~~~G~~~~~g~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~ 151 (444)
T 3gia_A 73 IAFIHKAIGDNIITGAL-SILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAE 151 (444)
T ss_dssp HHHHHHHHCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHhHHHHhCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 567888999973 222 22222222222233333333333332222222222211111 11 1122233344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CCcccHHHHHHHHHHHHHHhccccchHHHHhhccCcc-chhHHHHHHHHH
Q 011392 202 FLGLGMTTYTAWYLTIAAVVHGQVEGASH-TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKYIYLFATLY 279 (487)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~i~~g~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~a~~~ 279 (487)
.+.....+...+.+++..+...+.++... ..+.++.+++.++....|+|.|...+.....|+|||+ +.+|.+..+..+
T Consensus 152 ~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~ 231 (444)
T 3gia_A 152 FFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILI 231 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHH
Confidence 43333222222222222332222222221 2234556788888888999999999999999999995 489999999999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 011392 280 VFTLTIPSATAVYWSFGD 297 (487)
Q Consensus 280 ~~~~y~~~g~~gy~~fG~ 297 (487)
+.++|....+......+.
T Consensus 232 ~~~~y~~~~~~~~~~~~~ 249 (444)
T 3gia_A 232 VMFVYVGVAISAIGNLPI 249 (444)
T ss_dssp HHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHhCCCH
Confidence 999999887766555543
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.09 E-value=9.4e-08 Score=99.83 Aligned_cols=234 Identities=14% Similarity=0.134 Sum_probs=120.0
Q ss_pred CccHHHHHHHHHHhHhhhhhcchHHHHHhhchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh--hhhhccccccccccC
Q 011392 49 GGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSW-TAYLISVLYVEYRS--RKEKENVSFKNHVIQ 125 (487)
Q Consensus 49 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~ls~~-s~~ll~~~~~~~~~--~~~~~~~~~~~~~~~ 125 (487)
+.+.++.....++.++| +.++|. .+..|.. .++..++.+++... ....+ .|... +.+ .+ .
T Consensus 12 ~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~----ael~s~~~~P-~G--------G 74 (511)
T 4djk_A 12 QLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCA----AEMATVDGWE-EG--------G 74 (511)
T ss_dssp CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHH----HHHHTTSCC------------C
T ss_pred cccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHH----HHHcccccCC-CC--------C
Confidence 46788888888888886 567775 4667753 33333332222222 22222 34444 433 23 3
Q ss_pred HHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhc--cccccch---hHHHH-HHHHHhhhhccCCCcchhH
Q 011392 126 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYI--NDRLDKR---TWTYI-FGACCATTVFIPSFHNYRI 199 (487)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~--~~~~~~~---~~~ii-~~~i~~pl~~l~~l~~l~~ 199 (487)
....+++.+||+++.+..+...+........+.....+.+.+. .+..+.. .+.+. ...+++-+.-.+..+...+
T Consensus 75 ~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~ 154 (511)
T 4djk_A 75 VFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTAR 154 (511)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHH
T ss_pred hhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 5567888999998876555544443333222222222222222 2222211 11111 1111122222344455555
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHh---cCCCC----CCCC-CCcccHHHHHHHHHHHHHHhccccchHHHHhhccCc-cch
Q 011392 200 WSFLGLGM-TTYTAWYLTIAAVV---HGQVE----GASH-TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKF 269 (487)
Q Consensus 200 ~s~~~~~~-~~~~~~~~~~~~i~---~g~~~----~~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~ 269 (487)
+..+.... .+...+++++..+. .+... +.+. .+.......+.++...+|+|.|.........|+||| |+.
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~i 234 (511)
T 4djk_A 155 IAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDY 234 (511)
T ss_dssp HTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccch
Confidence 54443222 11111112222221 22111 1111 111111123455677899999999999999999999 558
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011392 270 KYIYLFATLYVFTLTIPSATAVYWSFGDQL 299 (487)
Q Consensus 270 ~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~ 299 (487)
+|++..++.++.++|+...+......+++.
T Consensus 235 p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~ 264 (511)
T 4djk_A 235 PLAMLLLMVAAICLSSVGGLSIAMVIPGNE 264 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHeecCHhh
Confidence 999999999999999998877766666543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.66 E-value=2.4e-05 Score=81.30 Aligned_cols=143 Identities=13% Similarity=0.016 Sum_probs=77.7
Q ss_pred CHHHHHHhhhCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccc---ccc-chhHHHHHHHHHhhhhccCCCcchhHH
Q 011392 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND---RLD-KRTWTYIFGACCATTVFIPSFHNYRIW 200 (487)
Q Consensus 125 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~~li~~~~~~~~~~~---~~~-~~~~~ii~~~i~~pl~~l~~l~~l~~~ 200 (487)
++.++.+..||+++..+..++..+..+|-........++.+..... ..+ ...+.+++.++.+++.+ ..++.++++
T Consensus 89 ~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~-~G~~~i~~~ 167 (501)
T 2jln_A 89 NFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTF-YGITFIRWM 167 (501)
T ss_dssp CHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHT-THHHHHHHH
T ss_pred ChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-hCHHHHHHH
Confidence 5888999999999999888888777777776666666665543321 222 34455666666666664 345667766
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCC-CC-CCCCCcccHHHHHHHHHHH-HHHhccccchHHHHhhccCccc
Q 011392 201 SFLGLGMTTYTAWYLTIAAVV-HGQV-EG-ASHTAPTKLVLYFTGATNI-LYTFGGHAVTVEIMHAMWKPQK 268 (487)
Q Consensus 201 s~~~~~~~~~~~~~~~~~~i~-~g~~-~~-~~~~~~~~~~~~~~~~~~~-~faf~~~~~i~~i~~~m~~p~~ 268 (487)
..+.....+...+.+.+..+. .|.. .+ ....+......++.++... .+.-....+.++..+.+|++++
T Consensus 168 ~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~ 239 (501)
T 2jln_A 168 NVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPN 239 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCcc
Confidence 666554443332222232222 2210 00 0111111111233333221 1111223678899999998876
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.49 E-value=0.13 Score=53.37 Aligned_cols=146 Identities=6% Similarity=-0.057 Sum_probs=71.1
Q ss_pred ecCccHHHHHHHHHHhHhhhh-hcchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccC
Q 011392 47 WHGGSAWDAWFSCASNQVAQV-LLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQ 125 (487)
Q Consensus 47 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 125 (487)
.++.+.|...+.+..+.+++. .+++|-...+.|+......... ++........+. ..+++. ...|
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~---p~~~~~----------~~~T 84 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFL---PIFIEK----------GIYT 84 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTH---HHHHHT----------TCCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHH---HHHHHc----------CCcc
Confidence 344677778888888877665 5589988888887532211110 111011111111 122211 1237
Q ss_pred HHHHHHhhhCcchhhHHHHHHHH-HHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHH
Q 011392 126 WFEVLDGLLGPYWKAVGLAFNCT-FLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 204 (487)
Q Consensus 126 y~~l~~~~~G~~~~~~~~~~~~~-~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~ 204 (487)
..|.-++-||++.+.+..++..+ +.+......+...+..++.. ...+....+++..+++.....+.-++...+.-.+-
T Consensus 85 ~~e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~-~Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ 163 (530)
T 3dh4_A 85 IPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETI-LGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQ 163 (530)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTC------CCSHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 88988888999887765543332 22221222222222222222 23455555566666666666666666666655544
Q ss_pred HHH
Q 011392 205 LGM 207 (487)
Q Consensus 205 ~~~ 207 (487)
.+.
T Consensus 164 ~~i 166 (530)
T 3dh4_A 164 VFF 166 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=96.64 E-value=0.87 Score=47.86 Aligned_cols=142 Identities=7% Similarity=-0.063 Sum_probs=67.6
Q ss_pred ccHHHHHHHHHHhHhhhhh-cchHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCHHH
Q 011392 50 GSAWDAWFSCASNQVAQVL-LTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (487)
Q Consensus 50 ~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~g~i~l~~~~~ls~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 128 (487)
.+.+...+.+..+.+++.. ++.|-.-.+.|+......... ++........+. ..+++ . ...|..|
T Consensus 51 l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~---p~~~r-~---------~~~T~~e 116 (593)
T 2xq2_A 51 LPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFL---PIFIE-K---------GIYTIPE 116 (593)
T ss_dssp CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHHHHHHHHTHH---HHHHH-T---------TCCSHHH
T ss_pred CCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHHHHHHHHHHH---HHHHh-C---------CCCCcHH
Confidence 4566777777777776655 588877777886422111110 000011111111 12211 1 1237889
Q ss_pred HHHhhhCcchhhHHHHHHHH-HHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Q 011392 129 VLDGLLGPYWKAVGLAFNCT-FLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (487)
Q Consensus 129 l~~~~~G~~~~~~~~~~~~~-~~~g~~~~~li~~~~~~~~~~~~~~~~~~~ii~~~i~~pl~~l~~l~~l~~~s~~~~~ 206 (487)
.-++=||++.+.+..++..+ +.+......+...+..++.+ ...+....+++..+++.....+.-++...+.-.+-.+
T Consensus 117 ~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~-~Gi~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~i 194 (593)
T 2xq2_A 117 FVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETI-LGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVF 194 (593)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHH
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88888898877665443322 22221122222223333322 1344444455555565666666667776665554443
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=34.79 E-value=3.7e+02 Score=27.16 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=57.0
Q ss_pred hhhccCCC-cchhHHHHHHHHHHHHHHHHHHHHHHh-cC----C--------CCCCCCCCcccHHHHHHHHHHHHHHhc-
Q 011392 187 TTVFIPSF-HNYRIWSFLGLGMTTYTAWYLTIAAVV-HG----Q--------VEGASHTAPTKLVLYFTGATNILYTFG- 251 (487)
Q Consensus 187 pl~~l~~l-~~l~~~s~~~~~~~~~~~~~~~~~~i~-~g----~--------~~~~~~~~~~~~~~~~~~~~~~~faf~- 251 (487)
.++..|.. +.+...+.+-+....+..+++.+.++. .| . .|+.+. -.+..-...|.+.+.|+.+
T Consensus 180 ~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~--L~~~~vw~~A~gQ~FFSLsl 257 (519)
T 2a65_A 180 VSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEK--LKDPGVWIAAVGQIFFTLSL 257 (519)
T ss_dssp HHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTS--TTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHH--hCCHHHHHHHHHHHHHHhHH
Confidence 34556666 456666666555444333344455554 23 1 122211 1122335788899999987
Q ss_pred cccchHHHHhhccCccchhHHH-HHHHHHHHH-H---HHHHHHHHHHhhccc
Q 011392 252 GHAVTVEIMHAMWKPQKFKYIY-LFATLYVFT-L---TIPSATAVYWSFGDQ 298 (487)
Q Consensus 252 ~~~~i~~i~~~m~~p~~~~~~~-~~a~~~~~~-~---y~~~g~~gy~~fG~~ 298 (487)
|...+...-+.+++.++..+.. .++..=+.+ + ..+++..||.++|.+
T Consensus 258 G~G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~ 309 (519)
T 2a65_A 258 GFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVA 309 (519)
T ss_dssp TSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHH
T ss_pred HHhHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4556666666777776665533 222221111 1 334555667666655
No 8
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=16.05 E-value=1.5e+02 Score=18.08 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=11.4
Q ss_pred hchhHHHHHHHHHHHH
Q 011392 78 MGMLSGILLQIFYGFL 93 (487)
Q Consensus 78 ~G~~~g~i~l~~~~~l 93 (487)
.|+++|.+-..+.|+.
T Consensus 7 ~GIVlGlipvtlaGLf 22 (37)
T 1q90_G 7 CGIVLGLVPVTIAGLF 22 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHhhHHHHHHHHH
Confidence 5777787777776655
No 9
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=12.59 E-value=1.3e+02 Score=18.29 Aligned_cols=16 Identities=19% Similarity=0.565 Sum_probs=10.5
Q ss_pred hchhHHHHHHHHHHHH
Q 011392 78 MGMLSGILLQIFYGFL 93 (487)
Q Consensus 78 ~G~~~g~i~l~~~~~l 93 (487)
.|+++|.+-..+.|+.
T Consensus 7 ~GIVlGlipvtl~GLf 22 (37)
T 1vf5_G 7 DGLVLGLVFATLGGLF 22 (37)
T ss_dssp --CHHHHHHHHHHHHT
T ss_pred hhHHHhhHHHHHHHHH
Confidence 5888888877776655
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=10.37 E-value=1.5e+02 Score=19.05 Aligned_cols=13 Identities=38% Similarity=0.485 Sum_probs=7.0
Q ss_pred hHHHhhhhHHHhH
Q 011392 379 PINSAVGALLVSF 391 (487)
Q Consensus 379 ~vl~lvGa~~~~~ 391 (487)
...+.+|++....
T Consensus 13 IA~gVVgGv~~~~ 25 (44)
T 2ks1_B 13 IATGMVGALLLLL 25 (44)
T ss_dssp STHHHHHHHHHHH
T ss_pred EEeehhHHHHHHH
Confidence 3455666666433
Done!