Query 011392
Match_columns 487
No_of_seqs 175 out of 1819
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 07:11:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011392.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011392hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 75.5 34 0.0025 32.3 39.0 30 50-79 5-36 (509)
2 d2axtm1 f.23.35.1 (M:1-36) Pho 21.0 69 0.005 17.9 3.9 27 385-412 7-33 (36)
3 d1oedc_ f.36.1.1 (C:) Acetylch 7.8 2.6E+02 0.019 22.5 5.7 39 362-400 42-80 (260)
4 d1q90g_ f.23.26.1 (G:) PetG su 7.7 1.7E+02 0.013 15.3 3.3 16 78-93 7-22 (30)
5 d1rh5b_ f.23.28.1 (B:) Preprot 7.5 1.9E+02 0.014 17.9 3.3 28 264-295 16-45 (56)
6 d1dsqa_ g.40.1.1 (A:) Nucleic 7.4 63 0.0046 16.2 0.7 9 467-475 4-12 (26)
7 d1oedb_ f.36.1.1 (B:) Acetylch 4.6 4.1E+02 0.03 21.1 5.0 33 364-396 44-76 (250)
8 d1wdia_ e.53.1.1 (A:) Queuosin 4.4 87 0.0063 27.7 0.1 14 473-486 174-187 (344)
9 d2e74f1 f.23.25.1 (F:1-32) Pet 4.3 2.8E+02 0.02 14.5 2.1 11 77-87 17-27 (32)
10 d1oeda_ f.36.1.1 (A:) Acetylch 4.1 5.8E+02 0.042 19.7 5.6 32 367-398 47-78 (227)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=75.51 E-value=34 Score=32.26 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=22.7
Q ss_pred ccHHHHHHHHHHhHhhhhhc-chHHHHH-hhc
Q 011392 50 GSAWDAWFSCASNQVAQVLL-TLPYSFS-QMG 79 (487)
Q Consensus 50 ~s~~~a~~~l~~~~iG~GiL-~LP~af~-~~G 79 (487)
.|.++-++..++..+|.|=+ =.||-.. +.|
T Consensus 5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGG 36 (509)
T d2a65a1 5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGG 36 (509)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTT
T ss_pred CChHHHHHHHHHHHhcccHHHhhhHHHHhcCC
Confidence 45677788899999999755 6898765 445
No 2
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.99 E-value=69 Score=17.86 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=18.5
Q ss_pred hhHHHhHHHHhhhHHHHHHHhhhHhhhh
Q 011392 385 GALLVSFTVYIIPSLAHMLTYRKASARQ 412 (487)
Q Consensus 385 Ga~~~~~l~filP~l~~l~~~~~~~~~~ 412 (487)
|-++ +.+-.+.|..|.+.++-+..+|+
T Consensus 7 g~iA-t~LFilvPt~FLliLyvqT~s~~ 33 (36)
T d2axtm1 7 GLIA-TALFVLVPSVFLIILYVQTESQQ 33 (36)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHH-HHHHHHHHHHHHHHhheeecccc
Confidence 4444 45556779999999888776553
No 3
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.82 E-value=2.6e+02 Score=22.50 Aligned_cols=39 Identities=8% Similarity=0.088 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhhhHHH
Q 011392 362 PVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLA 400 (487)
Q Consensus 362 ~~~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~l~ 400 (487)
.+.+....++-.+|..++-+-++|-.....+.++.=+++
T Consensus 42 s~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s~~ 80 (260)
T d1oedc_ 42 AQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIV 80 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 344455567777887776666666655555555444433
No 4
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.69 E-value=1.7e+02 Score=15.27 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=10.9
Q ss_pred hchhHHHHHHHHHHHH
Q 011392 78 MGMLSGILLQIFYGFL 93 (487)
Q Consensus 78 ~G~~~g~i~l~~~~~l 93 (487)
.|+++|.+-..+.|++
T Consensus 7 ~GivlGlipiTl~Glf 22 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHH
Confidence 5777777777766654
No 5
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=7.47 E-value=1.9e+02 Score=17.92 Aligned_cols=28 Identities=11% Similarity=-0.066 Sum_probs=13.4
Q ss_pred cCc--cchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011392 264 WKP--QKFKYIYLFATLYVFTLTIPSATAVYWSF 295 (487)
Q Consensus 264 ~~p--~~~~~~~~~a~~~~~~~y~~~g~~gy~~f 295 (487)
++| +.|+++... +.+=..++|+.||..+
T Consensus 16 ~KP~~~Ef~~ia~v----~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 16 KKPTKDEYLAVAKV----TALGISLLGIIGYIIH 45 (56)
T ss_dssp ECCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 455 446654432 2223344566666554
No 6
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=7.42 E-value=63 Score=16.18 Aligned_cols=9 Identities=22% Similarity=0.866 Sum_probs=6.5
Q ss_pred ccccCCCCC
Q 011392 467 KCYQCKPPP 475 (487)
Q Consensus 467 ~~~~c~~~~ 475 (487)
-||+|+...
T Consensus 4 vcfscgktg 12 (26)
T d1dsqa_ 4 VCFSCGKTG 12 (26)
T ss_dssp BCTTTCCBS
T ss_pred EEEecCCcc
Confidence 389998754
No 7
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.59 E-value=4.1e+02 Score=21.06 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCchhhHHHhhhhHHHhHHHHhh
Q 011392 364 VIPIWFLAIIFPFFGPINSAVGALLVSFTVYII 396 (487)
Q Consensus 364 ~~~~~~lA~~vP~~~~vl~lvGa~~~~~l~fil 396 (487)
.+....++-.+|..++-+-++|-.....+.++.
T Consensus 44 ~~~~~~v~~~~P~~s~~~p~i~~~~~~~~~~~~ 76 (250)
T d1oedb_ 44 TVFLLLLADKVPETSLSVPIIIRYLMFIMILVA 76 (250)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCcchHHHHHHHHHHHHHH
Confidence 334456666677665555555554444444433
No 8
>d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus thermophilus [TaxId: 274]}
Probab=4.35 E-value=87 Score=27.69 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=7.4
Q ss_pred CCCCCCcccccCCC
Q 011392 473 PPPPPAGAAAAGAH 486 (487)
Q Consensus 473 ~~~~~~~~~~~~~~ 486 (487)
.+.|+.+||.||-|
T Consensus 174 ~~~GSVAAPTAGLH 187 (344)
T d1wdia_ 174 RRPGSVAAPTAGLH 187 (344)
T ss_dssp ------CCCCGGGG
T ss_pred cCCCCcccccccCC
Confidence 46789999999988
No 9
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.27 E-value=2.8e+02 Score=14.46 Aligned_cols=11 Identities=36% Similarity=0.431 Sum_probs=6.5
Q ss_pred hhchhHHHHHH
Q 011392 77 QMGMLSGILLQ 87 (487)
Q Consensus 77 ~~G~~~g~i~l 87 (487)
-.||..|.+++
T Consensus 17 fvgwglgalll 27 (32)
T d2e74f1 17 FVGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhHHHHHHh
Confidence 34666666554
No 10
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.07 E-value=5.8e+02 Score=19.72 Aligned_cols=32 Identities=13% Similarity=0.335 Sum_probs=15.6
Q ss_pred HHHHHHhcCchhhHHHhhhhHHHhHHHHhhhH
Q 011392 367 IWFLAIIFPFFGPINSAVGALLVSFTVYIIPS 398 (487)
Q Consensus 367 ~~~lA~~vP~~~~vl~lvGa~~~~~l~filP~ 398 (487)
...++-.+|..++-+-++|-.....+.++.=+
T Consensus 47 ~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s 78 (227)
T d1oeda_ 47 LLVIVELIPSTSSAVPLIGKYMLFTMIFVISS 78 (227)
T ss_dssp HHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcccCcCccchHHHHHHHHHHHH
Confidence 34555556665544444444444444444333
Done!