Query 011393
Match_columns 487
No_of_seqs 441 out of 3063
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 00:51:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0739 AAA+-type ATPase [Post 100.0 3.8E-75 8.2E-80 545.8 30.5 398 52-487 5-438 (439)
2 KOG0738 AAA+-type ATPase [Post 100.0 4.3E-61 9.4E-66 465.8 38.9 294 192-486 188-490 (491)
3 KOG0730 AAA+-type ATPase [Post 100.0 1.7E-51 3.7E-56 423.4 26.4 268 204-483 422-692 (693)
4 COG1222 RPT1 ATP-dependent 26S 100.0 1.6E-50 3.4E-55 390.4 25.0 249 205-467 140-394 (406)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 5.8E-50 1.3E-54 406.3 26.1 277 207-485 502-789 (802)
6 KOG0740 AAA+-type ATPase [Post 100.0 1E-49 2.2E-54 400.6 25.0 297 190-486 127-425 (428)
7 KOG0736 Peroxisome assembly fa 100.0 3.6E-47 7.7E-52 394.7 25.9 278 207-485 663-952 (953)
8 KOG0737 AAA+-type ATPase [Post 100.0 2.8E-46 6E-51 363.1 23.8 277 209-486 85-382 (386)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 2.6E-45 5.7E-50 372.5 21.0 275 209-485 183-515 (802)
10 TIGR01243 CDC48 AAA family ATP 100.0 3.9E-41 8.5E-46 372.6 29.6 276 208-486 445-731 (733)
11 KOG0734 AAA+-type ATPase conta 100.0 1.1E-41 2.3E-46 341.4 20.2 240 211-465 299-541 (752)
12 COG0464 SpoVK ATPases of the A 100.0 7.1E-40 1.5E-44 348.4 28.1 258 205-480 231-492 (494)
13 KOG0727 26S proteasome regulat 100.0 2.2E-39 4.8E-44 298.6 20.8 246 207-466 146-397 (408)
14 COG1223 Predicted ATPase (AAA+ 100.0 2.2E-39 4.8E-44 299.8 19.8 243 210-469 115-359 (368)
15 KOG0652 26S proteasome regulat 100.0 1.5E-39 3.3E-44 300.9 18.7 257 196-466 151-413 (424)
16 KOG0735 AAA+-type ATPase [Post 100.0 6.6E-39 1.4E-43 330.4 23.9 227 211-440 662-891 (952)
17 CHL00195 ycf46 Ycf46; Provisio 100.0 3.8E-38 8.2E-43 329.0 28.4 256 211-484 223-484 (489)
18 PTZ00454 26S protease regulato 100.0 3.8E-38 8.2E-43 322.5 27.0 249 206-468 135-389 (398)
19 KOG0728 26S proteasome regulat 100.0 2.5E-38 5.4E-43 291.4 20.3 251 205-469 136-392 (404)
20 KOG0731 AAA+-type ATPase conta 100.0 4.2E-38 9E-43 333.9 23.3 245 209-467 304-555 (774)
21 KOG0726 26S proteasome regulat 100.0 6.5E-39 1.4E-43 300.8 15.2 248 204-465 173-426 (440)
22 PRK03992 proteasome-activating 100.0 5.1E-37 1.1E-41 315.5 26.2 253 206-472 121-379 (389)
23 KOG0729 26S proteasome regulat 100.0 2.3E-37 5.1E-42 287.2 17.8 248 205-466 166-419 (435)
24 PTZ00361 26 proteosome regulat 100.0 2E-36 4.4E-41 311.5 25.7 250 203-466 170-425 (438)
25 COG0465 HflB ATP-dependent Zn 100.0 8.5E-36 1.8E-40 311.6 20.7 242 210-465 144-390 (596)
26 TIGR01241 FtsH_fam ATP-depende 100.0 7.5E-35 1.6E-39 309.2 26.2 245 208-467 47-297 (495)
27 TIGR01242 26Sp45 26S proteasom 100.0 8E-34 1.7E-38 290.5 25.9 246 206-465 112-363 (364)
28 KOG0730 AAA+-type ATPase [Post 100.0 1.4E-34 3E-39 298.7 19.6 255 211-486 180-439 (693)
29 TIGR03689 pup_AAA proteasome A 100.0 3.7E-33 8E-38 291.0 28.1 253 202-464 168-477 (512)
30 KOG0732 AAA+-type ATPase conta 100.0 4.8E-34 1E-38 310.1 19.8 261 210-472 259-532 (1080)
31 CHL00176 ftsH cell division pr 100.0 7.2E-33 1.6E-37 297.8 26.4 241 210-465 177-423 (638)
32 TIGR01243 CDC48 AAA family ATP 100.0 2.9E-32 6.4E-37 302.0 25.8 261 210-473 172-443 (733)
33 KOG0651 26S proteasome regulat 100.0 5.7E-33 1.2E-37 263.3 14.1 245 207-465 123-373 (388)
34 PRK10733 hflB ATP-dependent me 100.0 3.4E-31 7.3E-36 287.9 25.4 244 210-468 146-395 (644)
35 KOG0741 AAA+-type ATPase [Post 100.0 8E-32 1.7E-36 270.3 15.2 268 210-479 213-506 (744)
36 CHL00206 ycf2 Ycf2; Provisiona 100.0 7.1E-31 1.5E-35 296.1 21.4 204 246-466 1627-1878(2281)
37 PLN00020 ribulose bisphosphate 100.0 5.9E-30 1.3E-34 251.8 20.7 222 212-438 111-355 (413)
38 CHL00181 cbbX CbbX; Provisiona 99.9 1.7E-23 3.7E-28 206.3 21.0 236 215-460 22-281 (287)
39 TIGR02881 spore_V_K stage V sp 99.9 1.8E-23 3.9E-28 204.4 20.1 214 215-438 5-242 (261)
40 TIGR02880 cbbX_cfxQ probable R 99.9 2.6E-23 5.7E-28 205.1 20.2 235 217-461 23-281 (284)
41 PF05496 RuvB_N: Holliday junc 99.9 1E-22 2.3E-27 188.9 15.4 195 209-430 17-225 (233)
42 PRK14956 DNA polymerase III su 99.9 4.5E-21 9.7E-26 197.8 22.2 193 205-431 7-227 (484)
43 KOG0742 AAA+-type ATPase [Post 99.9 4.7E-21 1E-25 188.0 20.6 215 211-434 350-592 (630)
44 COG2256 MGS1 ATPase related to 99.9 6.2E-21 1.3E-25 188.3 20.6 215 206-471 14-244 (436)
45 PRK00080 ruvB Holliday junctio 99.9 3.3E-20 7.1E-25 187.4 26.3 240 207-484 16-272 (328)
46 PRK07003 DNA polymerase III su 99.9 2.7E-21 5.8E-26 206.2 18.8 193 206-432 6-226 (830)
47 PRK12323 DNA polymerase III su 99.9 1.9E-21 4.1E-26 205.1 17.1 194 205-432 5-231 (700)
48 KOG0744 AAA+-type ATPase [Post 99.9 1.2E-21 2.6E-26 187.3 14.0 236 214-464 140-413 (423)
49 PF00004 AAA: ATPase family as 99.9 2.3E-21 4.9E-26 168.9 14.6 130 252-382 1-132 (132)
50 KOG0736 Peroxisome assembly fa 99.9 8E-21 1.7E-25 199.0 20.4 229 249-481 431-681 (953)
51 KOG0735 AAA+-type ATPase [Post 99.9 1E-20 2.2E-25 196.5 19.7 236 216-468 408-651 (952)
52 PRK14962 DNA polymerase III su 99.9 2.1E-20 4.6E-25 195.6 20.2 193 205-431 3-223 (472)
53 PRK14960 DNA polymerase III su 99.9 2.5E-20 5.4E-25 197.1 19.5 194 205-432 4-225 (702)
54 TIGR02639 ClpA ATP-dependent C 99.8 5.6E-20 1.2E-24 203.7 22.9 251 201-479 167-447 (731)
55 PRK14949 DNA polymerase III su 99.8 8E-20 1.7E-24 198.5 23.4 193 205-431 5-225 (944)
56 KOG0989 Replication factor C, 99.8 5.3E-20 1.1E-24 175.6 19.2 196 205-432 25-236 (346)
57 PRK14958 DNA polymerase III su 99.8 1.8E-20 3.9E-25 198.1 17.5 194 205-432 5-226 (509)
58 TIGR00635 ruvB Holliday juncti 99.8 1.3E-19 2.8E-24 181.3 22.8 194 214-434 2-209 (305)
59 TIGR02902 spore_lonB ATP-depen 99.8 2.7E-20 5.8E-25 198.5 17.7 222 202-463 51-330 (531)
60 COG2255 RuvB Holliday junction 99.8 2.3E-19 5.1E-24 169.5 21.8 198 210-434 20-231 (332)
61 PRK07994 DNA polymerase III su 99.8 5.3E-20 1.1E-24 197.2 19.7 193 206-432 6-226 (647)
62 PRK14961 DNA polymerase III su 99.8 6.5E-20 1.4E-24 187.5 18.8 194 205-432 5-226 (363)
63 PRK14964 DNA polymerase III su 99.8 6.2E-20 1.3E-24 191.4 18.7 194 206-433 3-224 (491)
64 PRK06645 DNA polymerase III su 99.8 2.3E-19 5.1E-24 188.5 21.3 195 205-433 10-236 (507)
65 PLN03025 replication factor C 99.8 2.3E-19 5.1E-24 180.5 20.4 189 205-428 2-202 (319)
66 PRK08691 DNA polymerase III su 99.8 1.1E-19 2.5E-24 193.8 18.5 195 205-433 5-227 (709)
67 PRK14951 DNA polymerase III su 99.8 1.6E-19 3.5E-24 193.1 18.5 195 205-433 5-232 (618)
68 PRK04195 replication factor C 99.8 3.9E-19 8.5E-24 188.3 21.3 186 205-418 3-195 (482)
69 KOG0743 AAA+-type ATPase [Post 99.8 1.3E-19 2.7E-24 181.9 16.1 205 212-426 197-412 (457)
70 PRK14963 DNA polymerase III su 99.8 5.1E-19 1.1E-23 186.7 20.5 193 205-431 3-222 (504)
71 PRK14957 DNA polymerase III su 99.8 5.7E-19 1.2E-23 186.7 20.6 194 205-432 5-226 (546)
72 PRK13342 recombination factor 99.8 1.5E-18 3.3E-23 180.5 22.0 189 206-432 2-202 (413)
73 PRK07764 DNA polymerase III su 99.8 6.2E-19 1.3E-23 194.7 19.5 193 205-431 4-226 (824)
74 PRK14959 DNA polymerase III su 99.8 8.7E-19 1.9E-23 186.3 19.3 192 205-430 5-224 (624)
75 PRK05896 DNA polymerase III su 99.8 9.6E-19 2.1E-23 185.1 19.4 194 205-432 5-226 (605)
76 PRK07133 DNA polymerase III su 99.8 1.2E-18 2.6E-23 187.8 20.2 200 205-432 7-225 (725)
77 PRK14969 DNA polymerase III su 99.8 6E-19 1.3E-23 187.7 17.6 194 206-433 6-227 (527)
78 PRK14952 DNA polymerase III su 99.8 1.3E-18 2.9E-23 185.5 20.2 193 206-432 3-225 (584)
79 TIGR00763 lon ATP-dependent pr 99.8 1.1E-18 2.3E-23 194.5 20.0 233 216-463 320-584 (775)
80 PRK12402 replication factor C 99.8 3.7E-18 7.9E-23 173.1 20.7 197 205-430 4-230 (337)
81 PRK05563 DNA polymerase III su 99.8 1.6E-18 3.4E-23 185.8 18.6 194 205-432 5-226 (559)
82 PRK08451 DNA polymerase III su 99.8 1.9E-18 4.1E-23 181.8 18.9 196 205-434 3-226 (535)
83 PRK14965 DNA polymerase III su 99.8 1.5E-18 3.3E-23 186.6 18.2 194 206-433 6-227 (576)
84 TIGR02397 dnaX_nterm DNA polym 99.8 2.1E-18 4.5E-23 176.3 17.6 194 205-432 3-224 (355)
85 PRK14953 DNA polymerase III su 99.8 3.4E-18 7.3E-23 179.9 19.1 195 205-433 5-227 (486)
86 PRK06305 DNA polymerase III su 99.8 1.4E-17 3.1E-22 174.0 22.6 193 205-431 6-227 (451)
87 PRK06647 DNA polymerase III su 99.8 5.8E-18 1.3E-22 180.7 19.6 194 205-432 5-226 (563)
88 TIGR03345 VI_ClpV1 type VI sec 99.8 1E-17 2.2E-22 187.2 22.2 210 202-433 173-409 (852)
89 PHA02544 44 clamp loader, smal 99.8 7.5E-18 1.6E-22 169.4 19.2 185 205-418 10-202 (316)
90 PRK09111 DNA polymerase III su 99.8 1E-17 2.3E-22 179.6 20.4 200 205-432 13-239 (598)
91 PRK14970 DNA polymerase III su 99.8 1.6E-17 3.4E-22 170.6 19.9 201 205-433 6-216 (367)
92 PRK00149 dnaA chromosomal repl 99.8 3E-17 6.5E-22 172.7 22.5 220 211-465 117-349 (450)
93 TIGR00362 DnaA chromosomal rep 99.8 3.3E-17 7.3E-22 170.3 22.5 218 211-464 105-336 (405)
94 COG2812 DnaX DNA polymerase II 99.8 2.2E-18 4.7E-23 179.3 13.5 202 205-434 5-228 (515)
95 PRK00440 rfc replication facto 99.8 1.9E-17 4.2E-22 166.4 20.1 194 204-432 5-209 (319)
96 KOG2004 Mitochondrial ATP-depe 99.8 1E-16 2.2E-21 167.4 25.4 216 215-439 410-654 (906)
97 PRK13341 recombination factor 99.8 2.3E-17 4.9E-22 180.3 21.0 190 205-432 17-223 (725)
98 PRK14955 DNA polymerase III su 99.8 1.4E-17 3.1E-22 172.1 18.3 200 206-433 6-235 (397)
99 KOG2028 ATPase related to the 99.8 1.3E-17 2.9E-22 161.9 16.5 221 205-470 127-373 (554)
100 COG0466 Lon ATP-dependent Lon 99.8 1.6E-17 3.4E-22 174.3 17.7 232 216-463 323-582 (782)
101 PRK11034 clpA ATP-dependent Cl 99.8 2.4E-17 5.2E-22 180.9 20.0 238 201-466 171-434 (758)
102 PRK14954 DNA polymerase III su 99.8 5.7E-17 1.2E-21 174.1 21.3 200 206-433 6-235 (620)
103 PRK14948 DNA polymerase III su 99.8 6.1E-17 1.3E-21 174.8 21.1 192 205-430 5-226 (620)
104 PRK10865 protein disaggregatio 99.7 2.8E-17 6.2E-22 184.1 18.4 196 202-419 164-381 (857)
105 PRK12422 chromosomal replicati 99.7 1.9E-16 4.2E-21 165.0 22.0 246 210-486 105-367 (445)
106 CHL00095 clpC Clp protease ATP 99.7 7.4E-17 1.6E-21 180.8 19.9 209 202-432 165-399 (821)
107 PRK14950 DNA polymerase III su 99.7 7.7E-17 1.7E-21 174.2 19.3 192 206-431 6-226 (585)
108 COG0464 SpoVK ATPases of the A 99.7 1.2E-16 2.6E-21 170.3 19.3 223 236-468 4-229 (494)
109 PRK07940 DNA polymerase III su 99.7 1.5E-16 3.2E-21 163.1 19.0 185 214-426 3-214 (394)
110 PRK06893 DNA replication initi 99.7 2.8E-16 6E-21 150.6 19.6 210 210-462 10-227 (229)
111 TIGR03346 chaperone_ClpB ATP-d 99.7 1.7E-16 3.6E-21 178.5 21.0 210 201-432 158-394 (852)
112 PRK14088 dnaA chromosomal repl 99.7 2.7E-16 5.8E-21 164.3 21.0 201 210-434 99-313 (440)
113 PRK14971 DNA polymerase III su 99.7 2.3E-16 5E-21 170.4 20.6 194 206-433 7-229 (614)
114 PRK14086 dnaA chromosomal repl 99.7 5E-16 1.1E-20 164.6 21.9 172 250-434 315-496 (617)
115 PRK05342 clpX ATP-dependent pr 99.7 4.2E-16 9.1E-21 160.5 20.3 222 218-439 73-383 (412)
116 PRK08084 DNA replication initi 99.7 8.3E-16 1.8E-20 147.9 20.9 207 211-462 17-233 (235)
117 PRK08903 DnaA regulatory inact 99.7 7.1E-16 1.5E-20 147.7 20.3 204 210-463 12-224 (227)
118 TIGR00390 hslU ATP-dependent p 99.7 2.7E-16 5.8E-21 159.0 17.9 243 217-464 13-429 (441)
119 TIGR03420 DnaA_homol_Hda DnaA 99.7 4.9E-16 1.1E-20 148.5 18.0 191 212-436 11-211 (226)
120 PF05673 DUF815: Protein of un 99.7 9E-16 1.9E-20 144.6 18.9 195 208-429 19-244 (249)
121 TIGR02928 orc1/cdc6 family rep 99.7 1.4E-15 3.1E-20 156.0 22.1 205 215-437 14-257 (365)
122 TIGR02903 spore_lon_C ATP-depe 99.7 1.8E-15 3.8E-20 164.0 21.8 236 202-466 140-431 (615)
123 PRK05201 hslU ATP-dependent pr 99.7 6.1E-16 1.3E-20 156.5 16.5 219 217-435 16-407 (443)
124 PF00308 Bac_DnaA: Bacterial d 99.7 1.3E-15 2.8E-20 144.8 17.7 198 211-432 3-214 (219)
125 PRK00411 cdc6 cell division co 99.7 4E-15 8.7E-20 154.2 22.9 226 213-467 27-284 (394)
126 KOG0991 Replication factor C, 99.7 2.3E-16 5E-21 145.0 10.5 192 205-427 16-216 (333)
127 PRK08727 hypothetical protein; 99.7 5.5E-15 1.2E-19 142.0 20.1 208 211-464 14-230 (233)
128 PRK10787 DNA-binding ATP-depen 99.7 2.1E-15 4.7E-20 166.8 19.1 228 217-464 323-581 (784)
129 PTZ00112 origin recognition co 99.7 2.5E-14 5.5E-19 153.9 26.4 218 216-467 755-1008(1164)
130 PRK14087 dnaA chromosomal repl 99.7 6E-15 1.3E-19 154.4 21.2 193 249-465 141-348 (450)
131 PRK05642 DNA replication initi 99.7 9.1E-15 2E-19 140.5 20.0 180 249-462 45-232 (234)
132 PRK06620 hypothetical protein; 99.7 1.2E-14 2.6E-19 137.6 20.2 195 211-462 11-213 (214)
133 TIGR00382 clpX endopeptidase C 99.6 7.6E-15 1.6E-19 150.5 19.0 221 218-438 79-388 (413)
134 PRK11034 clpA ATP-dependent Cl 99.6 5.8E-15 1.3E-19 162.3 19.0 207 217-437 459-718 (758)
135 COG0593 DnaA ATPase involved i 99.6 4E-14 8.7E-19 143.6 21.4 173 248-434 112-294 (408)
136 cd02679 MIT_spastin MIT: domai 99.6 3.2E-15 7E-20 116.5 9.4 79 50-128 1-79 (79)
137 PRK13407 bchI magnesium chelat 99.6 2.3E-14 4.9E-19 143.6 16.8 164 210-396 2-216 (334)
138 PRK07471 DNA polymerase III su 99.6 2E-13 4.3E-18 139.0 23.3 187 210-428 13-240 (365)
139 COG0542 clpA ATP-binding subun 99.6 1.1E-13 2.4E-18 149.5 22.1 207 215-437 490-757 (786)
140 PRK09087 hypothetical protein; 99.6 2.8E-14 6.1E-19 136.2 15.0 199 211-465 16-222 (226)
141 TIGR02639 ClpA ATP-dependent C 99.6 6E-14 1.3E-18 155.8 19.6 206 216-437 454-714 (731)
142 PRK09112 DNA polymerase III su 99.6 3.1E-13 6.7E-18 136.9 23.0 191 210-430 17-244 (351)
143 PRK05564 DNA polymerase III su 99.6 3.2E-13 7E-18 135.6 22.5 170 214-418 2-183 (313)
144 TIGR02640 gas_vesic_GvpN gas v 99.6 2.3E-13 5E-18 133.1 19.8 135 249-396 21-198 (262)
145 KOG1969 DNA replication checkp 99.5 1.7E-13 3.7E-18 143.9 18.2 213 205-436 260-517 (877)
146 COG2607 Predicted ATPase (AAA+ 99.5 6E-13 1.3E-17 123.4 18.5 196 208-430 52-277 (287)
147 CHL00081 chlI Mg-protoporyphyr 99.5 8.9E-13 1.9E-17 132.5 20.6 162 211-396 12-232 (350)
148 COG1224 TIP49 DNA helicase TIP 99.5 3E-12 6.5E-17 124.9 22.7 146 309-483 292-448 (450)
149 KOG2035 Replication factor C, 99.5 3.8E-12 8.3E-17 120.3 21.0 186 205-423 2-226 (351)
150 TIGR03346 chaperone_ClpB ATP-d 99.5 8.6E-13 1.9E-17 148.7 19.9 207 215-437 564-828 (852)
151 TIGR03345 VI_ClpV1 type VI sec 99.5 8.5E-13 1.8E-17 147.8 18.6 205 216-437 566-833 (852)
152 cd00009 AAA The AAA+ (ATPases 99.5 9.5E-13 2.1E-17 115.4 14.8 139 220-381 2-150 (151)
153 TIGR02030 BchI-ChlI magnesium 99.5 2.7E-12 5.8E-17 129.0 19.5 156 214-395 2-218 (337)
154 PRK07399 DNA polymerase III su 99.5 5E-12 1.1E-16 126.4 21.3 183 214-428 2-223 (314)
155 PRK04132 replication factor C 99.5 2.5E-12 5.4E-17 141.7 20.6 163 246-431 561-736 (846)
156 COG0542 clpA ATP-binding subun 99.5 9.2E-13 2E-17 142.4 16.4 197 202-419 156-373 (786)
157 COG1474 CDC6 Cdc6-related prot 99.5 4.3E-12 9.4E-17 129.0 20.3 226 218-474 19-274 (366)
158 CHL00095 clpC Clp protease ATP 99.5 1.9E-12 4.2E-17 145.4 18.9 206 216-437 509-784 (821)
159 cd02677 MIT_SNX15 MIT: domain 99.5 1.6E-13 3.4E-18 106.7 7.1 69 52-120 1-69 (75)
160 cd02683 MIT_1 MIT: domain cont 99.5 2E-13 4.4E-18 106.8 7.7 70 54-123 3-72 (77)
161 TIGR00678 holB DNA polymerase 99.5 2.2E-12 4.7E-17 119.9 15.9 145 247-418 12-184 (188)
162 TIGR01650 PD_CobS cobaltochela 99.4 2.4E-12 5.2E-17 127.4 15.9 138 249-398 64-235 (327)
163 COG0470 HolB ATPase involved i 99.4 1E-12 2.2E-17 132.3 13.5 150 216-393 1-178 (325)
164 PRK10865 protein disaggregatio 99.4 4.6E-12 1E-16 142.4 20.0 207 215-437 567-831 (857)
165 cd02684 MIT_2 MIT: domain cont 99.4 3.1E-13 6.8E-18 105.3 7.5 69 54-122 3-71 (75)
166 TIGR02974 phageshock_pspF psp 99.4 2E-12 4.3E-17 130.3 14.4 192 218-434 1-233 (329)
167 smart00745 MIT Microtubule Int 99.4 4.5E-13 9.7E-18 105.7 7.5 74 51-124 2-75 (77)
168 KOG0990 Replication factor C, 99.4 1.8E-12 3.8E-17 125.0 12.6 190 205-429 30-232 (360)
169 TIGR02442 Cob-chelat-sub cobal 99.4 6.1E-12 1.3E-16 137.4 18.2 156 214-395 2-213 (633)
170 PRK08058 DNA polymerase III su 99.4 2E-11 4.2E-16 123.3 20.6 175 214-428 3-206 (329)
171 PRK11608 pspF phage shock prot 99.4 3E-12 6.4E-17 129.1 14.6 196 214-434 4-240 (326)
172 cd02681 MIT_calpain7_1 MIT: do 99.4 8.1E-13 1.8E-17 102.6 7.5 68 54-121 3-71 (76)
173 TIGR01817 nifA Nif-specific re 99.4 5.4E-12 1.2E-16 135.8 16.7 201 210-434 190-428 (534)
174 PRK05707 DNA polymerase III su 99.4 2.4E-11 5.2E-16 122.2 20.0 152 246-421 19-198 (328)
175 TIGR03015 pepcterm_ATPase puta 99.4 7.6E-11 1.6E-15 115.6 22.3 193 250-466 44-267 (269)
176 PF04212 MIT: MIT (microtubule 99.4 9.6E-13 2.1E-17 101.5 6.7 68 53-120 1-68 (69)
177 COG1221 PspF Transcriptional r 99.4 2.3E-12 5E-17 130.5 10.8 196 212-435 74-310 (403)
178 PF06068 TIP49: TIP49 C-termin 99.4 9.4E-12 2E-16 123.4 14.6 102 309-427 279-392 (398)
179 TIGR02329 propionate_PrpR prop 99.4 7.2E-12 1.5E-16 133.2 14.2 197 213-434 209-450 (526)
180 COG1219 ClpX ATP-dependent pro 99.4 1.6E-11 3.4E-16 118.3 14.7 221 218-438 63-371 (408)
181 COG3829 RocR Transcriptional r 99.4 5.8E-12 1.3E-16 129.8 12.5 198 210-432 239-477 (560)
182 PRK15424 propionate catabolism 99.3 1.3E-11 2.9E-16 131.0 15.6 196 213-433 216-464 (538)
183 PRK05022 anaerobic nitric oxid 99.3 2.1E-11 4.6E-16 130.3 17.1 197 214-435 185-421 (509)
184 PRK13531 regulatory ATPase Rav 99.3 8.9E-11 1.9E-15 121.5 20.7 153 217-395 21-193 (498)
185 TIGR00602 rad24 checkpoint pro 99.3 1.3E-11 2.8E-16 132.9 14.8 199 205-423 73-321 (637)
186 PRK11388 DNA-binding transcrip 99.3 2.1E-11 4.6E-16 134.1 16.5 198 212-434 321-554 (638)
187 PHA02244 ATPase-like protein 99.3 3.3E-11 7.2E-16 120.7 16.3 124 249-385 119-263 (383)
188 PRK10820 DNA-binding transcrip 99.3 1.7E-11 3.7E-16 131.1 15.1 199 211-434 199-437 (520)
189 COG2204 AtoC Response regulato 99.3 1.5E-11 3.3E-16 126.7 14.1 197 213-434 138-374 (464)
190 cd02678 MIT_VPS4 MIT: domain c 99.3 4E-12 8.7E-17 99.5 7.4 70 52-121 1-70 (75)
191 cd02682 MIT_AAA_Arch MIT: doma 99.3 5.7E-12 1.2E-16 97.0 7.4 68 54-121 3-70 (75)
192 PRK15429 formate hydrogenlyase 99.3 5.2E-11 1.1E-15 131.9 18.1 197 213-434 373-609 (686)
193 COG0714 MoxR-like ATPases [Gen 99.3 2.5E-11 5.4E-16 122.8 13.8 154 217-395 25-202 (329)
194 PRK11331 5-methylcytosine-spec 99.3 5.3E-11 1.1E-15 122.2 15.5 143 215-382 174-357 (459)
195 PF01078 Mg_chelatase: Magnesi 99.3 2.4E-12 5.2E-17 119.2 5.1 46 214-273 1-46 (206)
196 TIGR00764 lon_rel lon-related 99.3 1.3E-10 2.8E-15 126.0 19.0 103 353-466 268-392 (608)
197 PRK06871 DNA polymerase III su 99.3 2.3E-10 4.9E-15 114.4 19.3 147 246-417 21-195 (325)
198 COG1220 HslU ATP-dependent pro 99.3 7.1E-11 1.5E-15 114.6 14.8 199 218-416 17-382 (444)
199 PRK07993 DNA polymerase III su 99.3 1.7E-10 3.8E-15 116.2 17.4 149 246-418 21-197 (334)
200 PF07728 AAA_5: AAA domain (dy 99.3 1.4E-11 3E-16 108.6 8.2 112 251-374 1-139 (139)
201 TIGR00368 Mg chelatase-related 99.3 1.9E-10 4.1E-15 121.5 18.1 146 213-386 189-394 (499)
202 smart00350 MCM minichromosome 99.3 9.7E-11 2.1E-15 125.0 15.8 167 216-397 203-401 (509)
203 PF05621 TniB: Bacterial TniB 99.3 3.1E-10 6.7E-15 110.6 17.7 205 216-439 34-274 (302)
204 KOG0745 Putative ATP-dependent 99.2 2.7E-10 5.9E-15 113.8 17.3 189 250-438 227-512 (564)
205 PF13177 DNA_pol3_delta2: DNA 99.2 9.5E-11 2E-15 106.2 11.7 133 220-382 1-160 (162)
206 cd02656 MIT MIT: domain contai 99.2 3.4E-11 7.3E-16 94.4 7.7 70 53-122 2-71 (75)
207 smart00382 AAA ATPases associa 99.2 7.8E-11 1.7E-15 102.2 10.7 124 249-383 2-147 (148)
208 PRK08769 DNA polymerase III su 99.2 4.3E-10 9.3E-15 112.2 17.3 166 222-420 10-203 (319)
209 COG3604 FhlA Transcriptional r 99.2 1.2E-10 2.6E-15 118.7 12.8 199 212-434 219-456 (550)
210 TIGR02031 BchD-ChlD magnesium 99.2 6.9E-10 1.5E-14 120.1 18.5 135 249-396 16-174 (589)
211 smart00763 AAA_PrkA PrkA AAA d 99.2 9E-10 1.9E-14 110.4 17.5 63 214-282 48-118 (361)
212 TIGR02915 PEP_resp_reg putativ 99.2 2.2E-10 4.9E-15 120.7 12.7 196 214-434 137-372 (445)
213 PRK06090 DNA polymerase III su 99.2 1.9E-09 4E-14 107.6 18.3 143 222-394 9-178 (319)
214 KOG1942 DNA helicase, TBP-inte 99.2 4.1E-09 8.8E-14 100.6 19.4 104 308-427 296-411 (456)
215 PF07724 AAA_2: AAA domain (Cd 99.2 8.1E-11 1.8E-15 107.4 7.7 114 248-363 2-130 (171)
216 PRK06964 DNA polymerase III su 99.1 4.3E-10 9.3E-15 113.2 12.9 133 247-395 19-203 (342)
217 cd02680 MIT_calpain7_2 MIT: do 99.1 1.7E-10 3.7E-15 89.1 7.6 64 54-121 3-70 (75)
218 PF07726 AAA_3: ATPase family 99.1 1.4E-11 3E-16 105.0 0.8 112 251-375 1-130 (131)
219 KOG0741 AAA+-type ATPase [Post 99.1 1.5E-09 3.3E-14 110.8 14.6 161 247-414 536-699 (744)
220 PF03215 Rad17: Rad17 cell cyc 99.1 1.4E-09 3E-14 115.3 14.0 210 204-435 7-269 (519)
221 PF00158 Sigma54_activat: Sigm 99.1 3.6E-10 7.8E-15 102.8 8.2 121 218-362 1-143 (168)
222 KOG1514 Origin recognition com 99.1 7.1E-09 1.5E-13 109.5 18.5 243 218-484 398-674 (767)
223 PRK10923 glnG nitrogen regulat 99.1 2.4E-09 5.2E-14 113.6 15.1 196 214-434 136-371 (469)
224 PRK09862 putative ATP-dependen 99.1 3.8E-09 8.2E-14 111.3 16.0 146 213-386 188-391 (506)
225 PTZ00111 DNA replication licen 99.0 5.9E-09 1.3E-13 114.9 16.9 167 216-396 450-657 (915)
226 PRK11361 acetoacetate metaboli 99.0 5.1E-09 1.1E-13 110.7 15.3 196 214-434 141-376 (457)
227 COG0606 Predicted ATPase with 99.0 9.2E-10 2E-14 112.3 9.0 46 213-272 176-221 (490)
228 PRK08116 hypothetical protein; 99.0 1.2E-09 2.5E-14 107.1 9.5 123 249-385 114-251 (268)
229 PRK13765 ATP-dependent proteas 99.0 7.4E-09 1.6E-13 112.1 16.1 51 210-274 25-75 (637)
230 PRK12377 putative replication 99.0 2.1E-09 4.5E-14 103.7 10.4 104 205-320 63-175 (248)
231 KOG2680 DNA helicase TIP49, TB 99.0 6.4E-08 1.4E-12 92.9 19.0 132 309-467 289-431 (454)
232 PRK15115 response regulator Gl 99.0 9.5E-09 2.1E-13 108.3 15.0 190 217-434 135-367 (444)
233 PRK08699 DNA polymerase III su 99.0 4.9E-09 1.1E-13 105.3 11.9 132 247-394 19-183 (325)
234 TIGR01818 ntrC nitrogen regula 98.9 4.3E-09 9.3E-14 111.5 11.5 196 215-434 133-367 (463)
235 PF01637 Arch_ATPase: Archaeal 98.9 4.6E-09 9.9E-14 100.0 10.3 185 219-425 2-233 (234)
236 COG1239 ChlI Mg-chelatase subu 98.9 1.9E-08 4.2E-13 101.4 15.0 162 213-398 14-234 (423)
237 PRK07952 DNA replication prote 98.9 7.6E-09 1.7E-13 99.6 11.8 104 205-320 61-174 (244)
238 KOG1970 Checkpoint RAD17-RFC c 98.9 5.7E-08 1.2E-12 100.2 18.5 212 204-434 70-320 (634)
239 PRK05917 DNA polymerase III su 98.9 2.7E-08 5.9E-13 97.5 15.1 119 246-383 16-154 (290)
240 KOG2227 Pre-initiation complex 98.9 1.8E-07 3.9E-12 95.0 19.8 199 215-434 149-379 (529)
241 PF14532 Sigma54_activ_2: Sigm 98.8 3.6E-09 7.9E-14 93.2 5.6 125 219-381 1-136 (138)
242 PRK08181 transposase; Validate 98.8 1.1E-08 2.3E-13 100.0 9.3 71 249-321 106-180 (269)
243 PRK06835 DNA replication prote 98.8 1.5E-08 3.2E-13 101.9 9.4 123 249-385 183-319 (329)
244 COG3283 TyrR Transcriptional r 98.8 1.5E-07 3.2E-12 92.5 15.0 201 209-434 197-432 (511)
245 PRK13406 bchD magnesium chelat 98.8 1.2E-07 2.6E-12 102.0 15.0 187 250-463 26-248 (584)
246 PRK10365 transcriptional regul 98.7 1.2E-07 2.6E-12 99.8 14.3 192 217-433 140-371 (441)
247 PRK07276 DNA polymerase III su 98.7 1.5E-06 3.3E-11 85.5 20.8 170 221-428 7-199 (290)
248 COG1241 MCM2 Predicted ATPase 98.7 1.1E-07 2.3E-12 102.7 12.9 169 215-393 285-480 (682)
249 PF13173 AAA_14: AAA domain 98.7 7.8E-08 1.7E-12 83.5 9.3 69 250-320 3-73 (128)
250 PRK07132 DNA polymerase III su 98.7 7.4E-07 1.6E-11 88.4 16.1 144 247-417 16-177 (299)
251 KOG0480 DNA replication licens 98.7 4.4E-07 9.6E-12 95.0 14.6 179 214-398 343-544 (764)
252 KOG1968 Replication factor C, 98.7 8.2E-08 1.8E-12 106.6 9.8 212 204-433 308-535 (871)
253 PF01695 IstB_IS21: IstB-like 98.6 1.5E-08 3.3E-13 93.1 3.3 70 248-319 46-119 (178)
254 PRK06526 transposase; Provisio 98.6 3.4E-08 7.3E-13 95.9 5.8 70 249-320 98-171 (254)
255 PRK05818 DNA polymerase III su 98.6 9E-07 1.9E-11 85.1 15.4 121 247-383 5-147 (261)
256 COG1484 DnaC DNA replication p 98.6 1.5E-07 3.1E-12 91.5 9.8 72 248-320 104-179 (254)
257 KOG0478 DNA replication licens 98.6 2.8E-07 6E-12 97.2 11.5 169 217-394 430-624 (804)
258 PF13401 AAA_22: AAA domain; P 98.6 2.4E-07 5.3E-12 80.2 9.4 98 249-360 4-125 (131)
259 PRK08939 primosomal protein Dn 98.6 1.3E-07 2.9E-12 94.2 8.5 71 248-320 155-229 (306)
260 KOG1051 Chaperone HSP104 and r 98.6 3.7E-07 8E-12 100.8 12.3 128 216-362 562-710 (898)
261 PRK09183 transposase/IS protei 98.6 1.3E-07 2.7E-12 92.4 7.7 71 249-320 102-176 (259)
262 PRK06921 hypothetical protein; 98.6 7.3E-08 1.6E-12 94.3 6.1 68 249-319 117-188 (266)
263 PF00493 MCM: MCM2/3/5 family 98.6 3.7E-08 8E-13 99.6 3.4 162 217-398 25-223 (331)
264 PLN03210 Resistant to P. syrin 98.5 4.4E-06 9.6E-11 98.0 20.9 192 195-418 160-388 (1153)
265 COG3284 AcoR Transcriptional a 98.5 8.9E-07 1.9E-11 93.4 11.4 175 248-434 335-540 (606)
266 PF00931 NB-ARC: NB-ARC domain 98.5 2.7E-06 5.9E-11 84.0 13.9 161 247-427 17-203 (287)
267 KOG0482 DNA replication licens 98.5 7.4E-07 1.6E-11 91.0 9.6 214 216-437 342-592 (721)
268 PF05729 NACHT: NACHT domain 98.4 2.4E-06 5.1E-11 76.8 12.0 140 251-398 2-165 (166)
269 PF09336 Vps4_C: Vps4 C termin 98.4 1.5E-07 3.2E-12 70.4 3.3 35 451-485 28-62 (62)
270 PF12775 AAA_7: P-loop contain 98.4 4.3E-07 9.4E-12 89.1 6.8 137 249-398 33-195 (272)
271 cd01120 RecA-like_NTPases RecA 98.4 4.7E-06 1E-10 74.4 12.4 72 252-323 2-100 (165)
272 COG5271 MDN1 AAA ATPase contai 98.4 1.1E-05 2.3E-10 92.0 16.6 137 249-398 1543-1705(4600)
273 PF12774 AAA_6: Hydrolytic ATP 98.3 6.7E-06 1.4E-10 78.7 11.9 135 249-402 32-183 (231)
274 COG3267 ExeA Type II secretory 98.3 6.4E-05 1.4E-09 71.4 17.8 176 251-437 53-256 (269)
275 KOG1051 Chaperone HSP104 and r 98.3 9.8E-06 2.1E-10 89.8 14.1 199 214-434 184-410 (898)
276 TIGR02237 recomb_radB DNA repa 98.2 6.8E-06 1.5E-10 77.5 10.4 80 244-323 7-112 (209)
277 KOG2170 ATPase of the AAA+ sup 98.2 2.5E-05 5.3E-10 75.7 14.1 98 218-320 84-190 (344)
278 PF14516 AAA_35: AAA-like doma 98.2 4.5E-05 9.7E-10 77.2 16.3 176 247-432 29-245 (331)
279 PF03969 AFG1_ATPase: AFG1-lik 98.2 3.5E-06 7.7E-11 85.8 8.3 102 247-363 60-168 (362)
280 KOG4509 Uncharacterized conser 98.2 4.4E-06 9.5E-11 73.9 6.6 68 53-120 11-79 (247)
281 KOG0477 DNA replication licens 98.1 1.3E-05 2.8E-10 83.9 10.5 167 217-398 450-652 (854)
282 PF00910 RNA_helicase: RNA hel 98.1 4.2E-06 9.1E-11 70.2 5.4 23 252-274 1-23 (107)
283 COG1618 Predicted nucleotide k 98.1 0.0001 2.3E-09 65.2 14.1 25 249-273 5-29 (179)
284 PHA00729 NTP-binding motif con 98.1 1.1E-05 2.3E-10 76.4 8.2 25 250-274 18-42 (226)
285 TIGR01618 phage_P_loop phage n 98.1 9.1E-06 2E-10 76.9 7.2 111 247-360 10-142 (220)
286 KOG2228 Origin recognition com 98.1 2.5E-05 5.3E-10 76.7 10.0 163 215-396 23-219 (408)
287 PRK06581 DNA polymerase III su 98.0 0.00021 4.5E-09 67.8 15.4 151 246-415 12-177 (263)
288 PRK00771 signal recognition pa 98.0 0.00019 4.1E-09 75.0 16.0 201 247-466 93-333 (437)
289 cd01124 KaiC KaiC is a circadi 98.0 7.2E-05 1.6E-09 68.9 11.3 71 252-322 2-109 (187)
290 KOG0481 DNA replication licens 98.0 0.00026 5.6E-09 73.0 15.7 159 217-382 332-513 (729)
291 PHA02624 large T antigen; Prov 97.9 6.2E-05 1.3E-09 80.1 11.3 121 247-382 429-561 (647)
292 COG1485 Predicted ATPase [Gene 97.9 5.6E-05 1.2E-09 75.0 9.7 105 243-363 59-171 (367)
293 PRK15455 PrkA family serine pr 97.9 1.8E-05 3.8E-10 83.8 6.5 72 203-282 65-137 (644)
294 PF05707 Zot: Zonular occluden 97.9 1.5E-05 3.2E-10 74.4 5.3 122 252-382 3-145 (193)
295 PRK08118 topology modulation p 97.9 2.7E-05 5.9E-10 70.8 6.7 33 250-282 2-34 (167)
296 PRK09361 radB DNA repair and r 97.9 7.3E-05 1.6E-09 71.3 10.0 76 247-323 21-122 (225)
297 PF13207 AAA_17: AAA domain; P 97.9 1.3E-05 2.9E-10 68.3 4.1 31 252-282 2-32 (121)
298 TIGR02688 conserved hypothetic 97.9 0.00013 2.9E-09 74.7 11.8 61 248-320 208-272 (449)
299 PRK12723 flagellar biosynthesi 97.8 0.0003 6.4E-09 72.4 14.2 128 249-389 174-328 (388)
300 TIGR02012 tigrfam_recA protein 97.8 0.00011 2.5E-09 73.4 10.7 77 247-323 53-148 (321)
301 PRK11823 DNA repair protein Ra 97.8 9.9E-05 2.1E-09 77.7 10.8 77 247-323 78-171 (446)
302 PF13191 AAA_16: AAA ATPase do 97.8 4.1E-05 8.9E-10 70.2 7.1 59 218-285 2-63 (185)
303 PRK04296 thymidine kinase; Pro 97.8 0.00015 3.2E-09 67.5 10.6 69 251-320 4-90 (190)
304 PRK04841 transcriptional regul 97.8 0.0013 2.8E-08 75.7 20.5 160 249-427 32-226 (903)
305 cd01121 Sms Sms (bacterial rad 97.8 0.00027 5.8E-09 72.5 12.9 77 247-323 80-173 (372)
306 PF13604 AAA_30: AAA domain; P 97.8 7.5E-05 1.6E-09 69.8 7.7 98 250-362 19-132 (196)
307 PRK07261 topology modulation p 97.8 6.1E-05 1.3E-09 68.8 6.8 34 251-284 2-35 (171)
308 KOG2543 Origin recognition com 97.8 0.00048 1E-08 68.9 13.4 159 216-397 6-194 (438)
309 cd00983 recA RecA is a bacter 97.7 0.00018 3.9E-09 72.0 10.3 77 247-323 53-148 (325)
310 PF06309 Torsin: Torsin; Inte 97.7 0.00018 4E-09 61.4 8.6 52 217-273 26-77 (127)
311 PTZ00202 tuzin; Provisional 97.7 0.002 4.3E-08 66.4 17.3 63 212-283 258-320 (550)
312 COG1373 Predicted ATPase (AAA+ 97.7 0.00027 5.8E-09 73.4 11.5 133 251-402 39-186 (398)
313 PRK08533 flagellar accessory p 97.7 0.0005 1.1E-08 65.9 12.4 75 247-321 22-130 (230)
314 PRK14722 flhF flagellar biosyn 97.7 0.00019 4.1E-09 73.2 9.9 110 248-370 136-266 (374)
315 PRK00131 aroK shikimate kinase 97.7 4.1E-05 8.9E-10 69.5 4.5 34 248-281 3-36 (175)
316 PRK13949 shikimate kinase; Pro 97.7 0.00031 6.7E-09 64.0 10.0 32 250-281 2-33 (169)
317 PF03266 NTPase_1: NTPase; In 97.7 0.00012 2.6E-09 66.6 6.9 23 251-273 1-23 (168)
318 PF10443 RNA12: RNA12 protein; 97.6 0.0013 2.9E-08 67.4 14.9 81 310-399 150-232 (431)
319 KOG0479 DNA replication licens 97.6 0.00019 4E-09 75.0 8.7 164 217-394 302-496 (818)
320 PF13671 AAA_33: AAA domain; P 97.6 0.00012 2.6E-09 64.3 6.5 27 252-278 2-28 (143)
321 PRK10867 signal recognition pa 97.6 0.0014 3E-08 68.4 15.0 205 247-466 98-341 (433)
322 cd01129 PulE-GspE PulE/GspE Th 97.6 0.00027 5.8E-09 69.2 9.0 94 212-318 56-159 (264)
323 cd01131 PilT Pilus retraction 97.6 0.00014 2.9E-09 68.2 6.6 67 251-317 3-83 (198)
324 KOG2709 Uncharacterized conser 97.6 0.00038 8.3E-09 69.7 9.8 86 47-132 12-99 (560)
325 PRK06067 flagellar accessory p 97.6 0.00073 1.6E-08 64.9 11.6 76 246-321 22-133 (234)
326 cd00046 DEXDc DEAD-like helica 97.6 0.00037 8.1E-09 59.7 8.6 24 250-273 1-24 (144)
327 PRK14974 cell division protein 97.6 0.0013 2.7E-08 66.5 13.5 36 248-283 139-177 (336)
328 COG5271 MDN1 AAA ATPase contai 97.6 0.00037 8.1E-09 80.1 10.3 139 249-397 888-1048(4600)
329 PF07693 KAP_NTPase: KAP famil 97.6 0.0016 3.4E-08 65.6 14.3 30 247-276 18-47 (325)
330 PHA02774 E1; Provisional 97.5 0.00091 2E-08 71.1 12.6 34 249-282 434-468 (613)
331 cd01394 radB RadB. The archaea 97.5 0.00056 1.2E-08 64.9 10.2 37 247-283 17-56 (218)
332 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00045 9.9E-09 66.2 9.7 40 245-284 15-63 (235)
333 PRK13695 putative NTPase; Prov 97.5 0.00078 1.7E-08 61.6 10.7 23 251-273 2-24 (174)
334 PRK05800 cobU adenosylcobinami 97.5 0.00093 2E-08 60.9 11.0 94 251-345 3-114 (170)
335 COG3854 SpoIIIAA ncharacterize 97.5 0.00027 5.9E-09 66.1 7.4 73 248-320 136-230 (308)
336 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.0012 2.6E-08 63.6 12.1 40 244-283 16-58 (237)
337 PRK10536 hypothetical protein; 97.5 0.0014 3E-08 63.2 12.3 45 214-272 53-97 (262)
338 PRK13947 shikimate kinase; Pro 97.5 0.0001 2.2E-09 67.0 4.3 32 250-281 2-33 (171)
339 PRK11889 flhF flagellar biosyn 97.5 0.002 4.3E-08 65.8 13.8 60 221-283 216-278 (436)
340 PRK03839 putative kinase; Prov 97.5 0.00011 2.3E-09 67.6 4.0 31 251-281 2-32 (180)
341 PRK00625 shikimate kinase; Pro 97.5 0.00012 2.6E-09 66.9 4.2 31 251-281 2-32 (173)
342 PRK09376 rho transcription ter 97.5 0.00035 7.7E-09 71.1 7.8 75 249-323 169-271 (416)
343 CHL00195 ycf46 Ycf46; Provisio 97.4 0.0056 1.2E-07 65.0 17.2 110 308-431 81-190 (489)
344 cd01393 recA_like RecA is a b 97.4 0.00069 1.5E-08 64.5 9.4 39 246-284 16-63 (226)
345 PRK06762 hypothetical protein; 97.4 0.00033 7.1E-09 63.4 6.8 37 250-286 3-39 (166)
346 PRK09354 recA recombinase A; P 97.4 0.00088 1.9E-08 67.7 10.4 76 247-322 58-152 (349)
347 cd00464 SK Shikimate kinase (S 97.4 0.00014 3E-09 64.8 4.1 31 251-281 1-31 (154)
348 PRK05973 replicative DNA helic 97.4 0.0035 7.5E-08 60.2 13.8 38 246-283 61-101 (237)
349 COG4650 RtcR Sigma54-dependent 97.4 0.00052 1.1E-08 66.3 8.0 73 249-321 208-295 (531)
350 COG0563 Adk Adenylate kinase a 97.4 0.0011 2.4E-08 60.9 9.9 28 251-278 2-29 (178)
351 KOG3347 Predicted nucleotide k 97.4 0.00013 2.8E-09 63.6 3.5 33 249-281 7-39 (176)
352 PF06745 KaiC: KaiC; InterPro 97.4 0.0018 4E-08 61.7 11.8 96 246-344 16-148 (226)
353 TIGR01425 SRP54_euk signal rec 97.4 0.0058 1.3E-07 63.5 15.9 205 247-466 98-340 (429)
354 PRK14532 adenylate kinase; Pro 97.4 0.00017 3.8E-09 66.7 4.2 35 251-287 2-36 (188)
355 TIGR01420 pilT_fam pilus retra 97.4 0.0004 8.7E-09 70.7 7.0 69 249-317 122-204 (343)
356 cd01128 rho_factor Transcripti 97.4 0.0007 1.5E-08 65.6 8.3 27 249-275 16-42 (249)
357 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00019 4E-09 66.1 4.1 34 252-287 2-35 (183)
358 cd00544 CobU Adenosylcobinamid 97.3 0.0022 4.8E-08 58.4 11.0 71 252-324 2-89 (169)
359 PRK13900 type IV secretion sys 97.3 0.00059 1.3E-08 69.0 8.0 71 248-318 159-245 (332)
360 PF00437 T2SE: Type II/IV secr 97.3 0.00023 5E-09 69.9 4.8 98 211-318 99-207 (270)
361 TIGR00064 ftsY signal recognit 97.3 0.0086 1.9E-07 58.9 15.8 37 247-283 70-109 (272)
362 PRK04040 adenylate kinase; Pro 97.3 0.005 1.1E-07 57.1 13.3 30 249-278 2-33 (188)
363 TIGR00416 sms DNA repair prote 97.3 0.002 4.4E-08 67.9 12.0 78 246-323 91-185 (454)
364 TIGR03499 FlhF flagellar biosy 97.3 0.0021 4.6E-08 63.5 11.4 37 248-284 193-234 (282)
365 cd02021 GntK Gluconate kinase 97.3 0.00023 5E-09 63.2 4.1 28 252-279 2-29 (150)
366 cd03283 ABC_MutS-like MutS-lik 97.3 0.0015 3.2E-08 61.2 9.6 23 250-272 26-48 (199)
367 cd01122 GP4d_helicase GP4d_hel 97.3 0.0017 3.7E-08 63.7 10.5 37 247-283 28-68 (271)
368 TIGR00959 ffh signal recogniti 97.3 0.013 2.9E-07 61.1 17.5 73 248-320 98-194 (428)
369 COG4088 Predicted nucleotide k 97.3 0.0011 2.3E-08 61.2 8.2 24 251-274 3-26 (261)
370 PRK12724 flagellar biosynthesi 97.3 0.0039 8.4E-08 64.4 13.3 36 249-284 223-262 (432)
371 cd00227 CPT Chloramphenicol (C 97.3 0.00021 4.5E-09 65.4 3.7 35 249-283 2-36 (175)
372 PF10236 DAP3: Mitochondrial r 97.3 0.02 4.4E-07 57.4 18.2 117 308-425 156-308 (309)
373 PRK12726 flagellar biosynthesi 97.3 0.0024 5.3E-08 64.9 11.5 87 193-284 155-244 (407)
374 KOG2383 Predicted ATPase [Gene 97.3 0.0017 3.7E-08 65.5 10.1 28 246-273 111-138 (467)
375 PRK06217 hypothetical protein; 97.3 0.00029 6.3E-09 65.0 4.4 31 251-281 3-33 (183)
376 TIGR02782 TrbB_P P-type conjug 97.3 0.0005 1.1E-08 68.5 6.4 70 249-318 132-214 (299)
377 PRK13948 shikimate kinase; Pro 97.3 0.00034 7.3E-09 64.5 4.7 35 247-281 8-42 (182)
378 COG0703 AroK Shikimate kinase 97.3 0.00025 5.3E-09 64.1 3.6 32 250-281 3-34 (172)
379 PF12780 AAA_8: P-loop contain 97.2 0.028 6.1E-07 55.1 18.2 90 216-317 8-98 (268)
380 PRK05703 flhF flagellar biosyn 97.2 0.0025 5.5E-08 66.6 11.6 36 249-284 221-261 (424)
381 PRK14531 adenylate kinase; Pro 97.2 0.00031 6.7E-09 64.8 4.3 30 250-279 3-32 (183)
382 TIGR02525 plasmid_TraJ plasmid 97.2 0.00059 1.3E-08 69.9 6.7 69 250-318 150-235 (372)
383 cd01428 ADK Adenylate kinase ( 97.2 0.0003 6.4E-09 65.2 4.1 29 252-280 2-30 (194)
384 COG5245 DYN1 Dynein, heavy cha 97.2 0.0011 2.5E-08 75.7 9.1 143 246-398 1491-1660(3164)
385 cd02020 CMPK Cytidine monophos 97.2 0.00031 6.6E-09 61.8 3.9 30 252-281 2-31 (147)
386 TIGR01313 therm_gnt_kin carboh 97.2 0.00031 6.7E-09 63.4 3.9 28 252-279 1-28 (163)
387 PRK04132 replication factor C 97.2 0.00017 3.8E-09 80.5 2.7 52 202-265 5-56 (846)
388 PRK14530 adenylate kinase; Pro 97.2 0.00036 7.9E-09 66.1 4.5 31 250-280 4-34 (215)
389 COG1102 Cmk Cytidylate kinase 97.2 0.00031 6.8E-09 62.2 3.6 28 252-279 3-30 (179)
390 cd01125 repA Hexameric Replica 97.2 0.0095 2.1E-07 57.4 14.4 21 252-272 4-24 (239)
391 PRK13764 ATPase; Provisional 97.2 0.00075 1.6E-08 72.9 7.2 69 249-318 257-334 (602)
392 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.0016 3.6E-08 61.6 8.9 22 250-271 30-51 (213)
393 PF13479 AAA_24: AAA domain 97.2 0.0019 4.2E-08 61.1 9.3 68 249-320 3-80 (213)
394 cd00984 DnaB_C DnaB helicase C 97.2 0.0018 4E-08 62.3 9.3 37 247-283 11-51 (242)
395 cd01130 VirB11-like_ATPase Typ 97.2 0.00057 1.2E-08 63.3 5.5 70 248-317 24-109 (186)
396 cd02027 APSK Adenosine 5'-phos 97.2 0.0012 2.5E-08 58.9 7.2 34 252-285 2-38 (149)
397 PRK08233 hypothetical protein; 97.2 0.0041 8.9E-08 56.8 11.2 33 250-282 4-37 (182)
398 PF04665 Pox_A32: Poxvirus A32 97.2 0.0048 1E-07 59.2 11.8 132 248-395 12-169 (241)
399 PRK04328 hypothetical protein; 97.2 0.0054 1.2E-07 59.5 12.5 36 247-282 21-59 (249)
400 PRK10416 signal recognition pa 97.2 0.014 3E-07 58.7 15.7 36 248-283 113-151 (318)
401 TIGR02858 spore_III_AA stage I 97.2 0.00042 9.1E-09 67.9 4.6 68 250-317 112-203 (270)
402 PRK06547 hypothetical protein; 97.2 0.00043 9.3E-09 63.2 4.3 35 247-281 13-47 (172)
403 PF08433 KTI12: Chromatin asso 97.1 0.002 4.3E-08 63.2 9.1 68 252-320 4-82 (270)
404 TIGR03574 selen_PSTK L-seryl-t 97.1 0.0019 4.1E-08 62.6 8.9 34 252-285 2-38 (249)
405 PRK13946 shikimate kinase; Pro 97.1 0.00041 8.8E-09 64.1 3.9 33 249-281 10-42 (184)
406 TIGR03878 thermo_KaiC_2 KaiC d 97.1 0.0045 9.7E-08 60.5 11.4 37 247-283 34-73 (259)
407 PRK13833 conjugal transfer pro 97.1 0.0016 3.4E-08 65.4 8.3 69 249-317 144-224 (323)
408 PRK03731 aroL shikimate kinase 97.1 0.00049 1.1E-08 62.6 4.3 32 250-281 3-34 (171)
409 PTZ00088 adenylate kinase 1; P 97.1 0.00046 9.9E-09 66.0 4.3 32 250-281 7-38 (229)
410 PF13245 AAA_19: Part of AAA d 97.1 0.00082 1.8E-08 52.6 4.9 33 250-282 11-50 (76)
411 COG2909 MalT ATP-dependent tra 97.1 0.0091 2E-07 65.7 14.4 157 248-421 36-229 (894)
412 cd03216 ABC_Carb_Monos_I This 97.1 0.0027 5.8E-08 57.4 9.0 90 247-343 24-128 (163)
413 COG4619 ABC-type uncharacteriz 97.1 0.0026 5.6E-08 57.0 8.4 26 247-272 27-52 (223)
414 PF00448 SRP54: SRP54-type pro 97.1 0.0032 6.9E-08 58.8 9.6 35 249-283 1-38 (196)
415 PF05272 VirE: Virulence-assoc 97.1 0.0027 5.9E-08 59.3 9.1 111 247-382 50-169 (198)
416 TIGR00767 rho transcription te 97.1 0.0017 3.8E-08 66.4 8.3 27 247-273 166-192 (415)
417 TIGR02533 type_II_gspE general 97.1 0.0022 4.7E-08 68.3 9.4 95 211-318 217-321 (486)
418 TIGR01448 recD_rel helicase, p 97.1 0.0025 5.3E-08 71.2 10.2 101 250-366 339-458 (720)
419 PRK05057 aroK shikimate kinase 97.1 0.00058 1.3E-08 62.4 4.4 34 249-282 4-37 (172)
420 TIGR03880 KaiC_arch_3 KaiC dom 97.1 0.0076 1.6E-07 57.4 12.3 38 247-284 14-54 (224)
421 smart00487 DEXDc DEAD-like hel 97.1 0.0036 7.9E-08 57.0 9.8 33 250-282 25-62 (201)
422 PF08298 AAA_PrkA: PrkA AAA do 97.1 0.0015 3.3E-08 65.4 7.6 63 215-283 59-123 (358)
423 PRK13851 type IV secretion sys 97.1 0.00062 1.3E-08 69.0 4.9 72 247-318 160-246 (344)
424 PLN02200 adenylate kinase fami 97.1 0.00064 1.4E-08 65.3 4.8 38 248-287 42-79 (234)
425 PRK14528 adenylate kinase; Pro 97.0 0.00059 1.3E-08 63.2 4.1 31 250-280 2-32 (186)
426 PF09848 DUF2075: Uncharacteri 97.0 0.0016 3.5E-08 66.5 7.7 23 251-273 3-25 (352)
427 PRK04301 radA DNA repair and r 97.0 0.0037 8E-08 62.9 10.0 38 247-284 100-146 (317)
428 PLN03187 meiotic recombination 97.0 0.0044 9.5E-08 62.8 10.5 38 247-284 124-170 (344)
429 COG2804 PulE Type II secretory 97.0 0.0021 4.5E-08 67.1 8.2 101 205-318 226-337 (500)
430 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00065 1.4E-08 62.5 4.1 30 250-279 4-33 (188)
431 PRK02496 adk adenylate kinase; 97.0 0.00066 1.4E-08 62.6 4.0 30 251-280 3-32 (184)
432 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0026 5.6E-08 58.4 7.9 72 247-319 23-100 (177)
433 PRK13894 conjugal transfer ATP 97.0 0.0025 5.5E-08 64.0 8.4 70 249-318 148-229 (319)
434 PRK08154 anaerobic benzoate ca 97.0 0.0011 2.4E-08 66.5 5.8 36 246-281 130-165 (309)
435 TIGR01351 adk adenylate kinase 97.0 0.00064 1.4E-08 64.2 3.9 28 252-279 2-29 (210)
436 TIGR02236 recomb_radA DNA repa 97.0 0.005 1.1E-07 61.8 10.5 38 247-284 93-139 (310)
437 COG1936 Predicted nucleotide k 97.0 0.00057 1.2E-08 61.3 3.2 30 251-281 2-31 (180)
438 PRK09519 recA DNA recombinatio 97.0 0.0052 1.1E-07 68.2 11.3 76 247-322 58-152 (790)
439 TIGR02788 VirB11 P-type DNA tr 97.0 0.0012 2.5E-08 66.3 5.9 72 247-318 142-228 (308)
440 PRK10436 hypothetical protein; 97.0 0.0032 6.9E-08 66.4 9.3 94 212-318 194-297 (462)
441 PF13481 AAA_25: AAA domain; P 97.0 0.0033 7.1E-08 58.2 8.5 76 248-323 31-156 (193)
442 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0024 5.2E-08 56.5 7.1 71 247-319 24-99 (144)
443 cd03115 SRP The signal recogni 97.0 0.0033 7.2E-08 57.2 8.3 34 251-284 2-38 (173)
444 TIGR02238 recomb_DMC1 meiotic 97.0 0.0043 9.2E-08 62.3 9.6 38 247-284 94-140 (313)
445 PRK00279 adk adenylate kinase; 96.9 0.00077 1.7E-08 63.9 4.0 29 251-279 2-30 (215)
446 cd03243 ABC_MutS_homologs The 96.9 0.0066 1.4E-07 56.9 10.3 22 249-270 29-50 (202)
447 TIGR02538 type_IV_pilB type IV 96.9 0.0032 6.9E-08 68.4 9.0 95 211-318 291-395 (564)
448 COG1066 Sms Predicted ATP-depe 96.9 0.0063 1.4E-07 61.8 10.3 79 246-324 90-184 (456)
449 PF13238 AAA_18: AAA domain; P 96.9 0.00067 1.4E-08 58.0 3.0 22 252-273 1-22 (129)
450 cd00267 ABC_ATPase ABC (ATP-bi 96.9 0.0043 9.3E-08 55.6 8.3 73 247-319 23-109 (157)
451 cd02019 NK Nucleoside/nucleoti 96.9 0.0013 2.8E-08 50.4 4.1 22 252-273 2-23 (69)
452 PRK14527 adenylate kinase; Pro 96.9 0.00081 1.7E-08 62.5 3.6 31 249-279 6-36 (191)
453 cd00561 CobA_CobO_BtuR ATP:cor 96.9 0.01 2.2E-07 53.3 10.4 29 251-279 4-35 (159)
454 PRK06696 uridine kinase; Valid 96.9 0.0026 5.7E-08 60.6 7.1 38 249-286 22-62 (223)
455 PRK00889 adenylylsulfate kinas 96.9 0.0043 9.4E-08 56.6 8.2 37 248-284 3-42 (175)
456 TIGR02768 TraA_Ti Ti-type conj 96.9 0.0035 7.7E-08 70.2 9.0 71 250-320 369-451 (744)
457 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.014 3E-07 55.8 12.0 37 246-282 17-56 (229)
458 smart00534 MUTSac ATPase domai 96.9 0.012 2.7E-07 54.3 11.2 19 252-270 2-20 (185)
459 PF06414 Zeta_toxin: Zeta toxi 96.9 0.0032 6.9E-08 58.9 7.3 41 247-287 13-54 (199)
460 cd03280 ABC_MutS2 MutS2 homolo 96.9 0.0089 1.9E-07 55.9 10.4 21 250-270 29-49 (200)
461 PF13086 AAA_11: AAA domain; P 96.9 0.0014 3.1E-08 62.0 5.0 22 252-273 20-41 (236)
462 PRK08485 DNA polymerase III su 96.8 0.0087 1.9E-07 55.3 9.7 106 296-417 41-159 (206)
463 TIGR02655 circ_KaiC circadian 96.8 0.012 2.5E-07 62.9 12.2 77 246-322 260-367 (484)
464 PF01583 APS_kinase: Adenylyls 96.8 0.0039 8.5E-08 55.7 7.2 66 250-315 3-80 (156)
465 PLN02674 adenylate kinase 96.8 0.0013 2.9E-08 63.3 4.4 36 249-286 31-66 (244)
466 PF13521 AAA_28: AAA domain; P 96.8 0.0011 2.4E-08 59.8 3.5 26 252-278 2-27 (163)
467 PRK01184 hypothetical protein; 96.8 0.0013 2.7E-08 60.7 3.9 29 251-280 3-31 (184)
468 PTZ00035 Rad51 protein; Provis 96.8 0.0081 1.7E-07 60.9 10.1 38 247-284 116-162 (337)
469 PRK14700 recombination factor 96.8 0.012 2.6E-07 57.8 10.8 108 351-471 6-121 (300)
470 TIGR00150 HI0065_YjeE ATPase, 96.8 0.0017 3.8E-08 56.4 4.4 30 247-276 20-49 (133)
471 PF00406 ADK: Adenylate kinase 96.8 0.001 2.2E-08 59.2 3.1 33 254-288 1-33 (151)
472 PF05970 PIF1: PIF1-like helic 96.8 0.0057 1.2E-07 62.8 9.0 27 248-274 21-47 (364)
473 COG1126 GlnQ ABC-type polar am 96.8 0.0058 1.3E-07 57.0 7.9 25 247-271 26-50 (240)
474 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0061 1.3E-07 61.3 8.9 39 246-284 93-140 (316)
475 COG1855 ATPase (PilT family) [ 96.7 0.00081 1.8E-08 68.5 2.5 45 212-273 243-287 (604)
476 PF08303 tRNA_lig_kinase: tRNA 96.7 0.036 7.7E-07 49.7 12.6 62 255-320 5-66 (168)
477 PRK04182 cytidylate kinase; Pr 96.7 0.0015 3.2E-08 59.6 4.0 29 251-279 2-30 (180)
478 PRK14730 coaE dephospho-CoA ki 96.7 0.0052 1.1E-07 57.3 7.7 34 251-286 3-36 (195)
479 PF10662 PduV-EutP: Ethanolami 96.7 0.011 2.3E-07 52.0 9.1 23 250-272 2-24 (143)
480 PRK14526 adenylate kinase; Pro 96.7 0.0017 3.8E-08 61.3 4.4 33 251-285 2-34 (211)
481 PHA02530 pseT polynucleotide k 96.7 0.0016 3.6E-08 64.8 4.4 30 250-279 3-33 (300)
482 PRK13889 conjugal transfer rel 96.7 0.0072 1.6E-07 69.1 10.0 101 251-366 364-476 (988)
483 TIGR02173 cyt_kin_arch cytidyl 96.7 0.0016 3.5E-08 58.8 4.0 30 251-280 2-31 (171)
484 COG4178 ABC-type uncharacteriz 96.7 0.0098 2.1E-07 63.9 10.1 26 247-272 417-442 (604)
485 PLN03186 DNA repair protein RA 96.7 0.0094 2E-07 60.4 9.6 38 247-284 121-167 (342)
486 cd03238 ABC_UvrA The excision 96.7 0.01 2.3E-07 54.3 9.0 26 247-272 19-44 (176)
487 TIGR01526 nadR_NMN_Atrans nico 96.7 0.0038 8.2E-08 63.0 6.7 33 250-282 163-195 (325)
488 PRK10263 DNA translocase FtsK; 96.6 0.015 3.2E-07 67.2 11.8 74 310-393 1142-1217(1355)
489 PRK10875 recD exonuclease V su 96.6 0.014 3E-07 63.8 11.2 24 250-273 168-191 (615)
490 PRK06731 flhF flagellar biosyn 96.6 0.024 5.2E-07 55.5 11.8 35 248-282 74-111 (270)
491 COG2805 PilT Tfp pilus assembl 96.6 0.0032 7E-08 61.4 5.5 69 250-318 126-208 (353)
492 PF01745 IPT: Isopentenyl tran 96.6 0.0029 6.3E-08 58.9 4.9 38 251-288 3-40 (233)
493 COG4608 AppF ABC-type oligopep 96.6 0.0074 1.6E-07 58.3 7.8 75 247-321 37-140 (268)
494 COG0541 Ffh Signal recognition 96.6 0.22 4.8E-06 51.3 18.5 231 220-466 70-340 (451)
495 TIGR02524 dot_icm_DotB Dot/Icm 96.6 0.0041 8.8E-08 63.6 6.3 70 249-318 134-222 (358)
496 PRK05541 adenylylsulfate kinas 96.6 0.0024 5.3E-08 58.3 4.3 28 247-274 5-32 (176)
497 PRK12608 transcription termina 96.6 0.006 1.3E-07 62.0 7.4 24 250-273 134-157 (380)
498 PRK12339 2-phosphoglycerate ki 96.6 0.0026 5.7E-08 59.4 4.5 29 249-277 3-31 (197)
499 TIGR00152 dephospho-CoA kinase 96.6 0.004 8.8E-08 57.6 5.7 29 252-280 2-30 (188)
500 PRK10078 ribose 1,5-bisphospho 96.6 0.0023 5.1E-08 59.1 4.1 30 250-279 3-32 (186)
No 1
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-75 Score=545.84 Aligned_cols=398 Identities=40% Similarity=0.647 Sum_probs=346.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCC-CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011393 52 GYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTP-VPSYISTSEHEKVKSYRQKISKWQSQVSDRLQALNR 130 (487)
Q Consensus 52 ~~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~-~~~~~~~~~~~k~~~y~~rae~~k~~v~~rl~~L~~ 130 (487)
.++++|++++++|+..|++++|++|+.+|++|++||+.+++|| .+++.++.++.|+.+|++|||+++.. |.+
T Consensus 5 ~~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkLK~y-------L~~ 77 (439)
T KOG0739|consen 5 SFLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKLKAY-------LKE 77 (439)
T ss_pred hHHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHH-------HHh
Confidence 4789999999999999999999999999999999999999999 66679999999999999999999988 443
Q ss_pred hhCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCccccccccccCCCchhhhccCCCChHHHHHhhhccccCC
Q 011393 131 RAGGTSTSKSTSPHAQTAAVSSTSNFRKNISPNSPRSSRNNPVVRNQTEKTGSSKPLAEAGNGYDSKLVEMINTAIVDRS 210 (487)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (487)
...+... ...+ +.+. ...++ .+.+..-...+....++|...++..|+.+.
T Consensus 78 ~~~~~~k-~~~~------a~a~--------------~~~~k---------~~ds~~eg~d~~pe~kKLr~~L~sAIv~EK 127 (439)
T KOG0739|consen 78 KEKGAGK-KGDE------AVAT--------------VPKGK---------KKDSDGEGEDDEPEKKKLRSALNSAIVREK 127 (439)
T ss_pred hccCCCC-CCcc------ccCC--------------CCCCC---------CCCccccccCCChhHHHHHHHhhhhhhccC
Confidence 2211110 0000 0000 00000 000000011122345789999999999999
Q ss_pred CCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhcc
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWV 290 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~ 290 (487)
|++.|+||+|++.+|++|++.|++|..+|++|++.+.|+++|||||||||||++||+|+|.+.+.+||.|+.++++++|+
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHH
Q 011393 291 GEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAV 370 (487)
Q Consensus 291 g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al 370 (487)
|++++.++.+|+.|+.+.|+||||||||+|++.|++++.++.+|+..+||.+|.|+..+ .+.|+|+++||.||.||.++
T Consensus 208 GESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d-~~gvLVLgATNiPw~LDsAI 286 (439)
T KOG0739|consen 208 GESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGND-NDGVLVLGATNIPWVLDSAI 286 (439)
T ss_pred ccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccC-CCceEEEecCCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999854 56799999999999999999
Q ss_pred HcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccch--------
Q 011393 371 LRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNI-------- 442 (487)
Q Consensus 371 ~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~-------- 442 (487)
+|||.++|++|+|+...|..+|+.++...+..+++.++..|+++|+||||+||.-+|++|.|.++|+.+...
T Consensus 287 RRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAthFk~v~~~ 366 (439)
T KOG0739|consen 287 RRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGP 366 (439)
T ss_pred HHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999875311
Q ss_pred ------h-------------------cccc--ccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCCC
Q 011393 443 ------L-------------------TVKA--NQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGSN 487 (487)
Q Consensus 443 ------~-------------------~~~~--~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~g~~ 487 (487)
. .... .-.+++|+.||..++...+|+++.+++...++|++.||+|
T Consensus 367 s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGqE 438 (439)
T KOG0739|consen 367 SNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQE 438 (439)
T ss_pred CChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhccC
Confidence 0 0001 1136799999999999999999999999999999999986
No 2
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-61 Score=465.77 Aligned_cols=294 Identities=49% Similarity=0.820 Sum_probs=270.3
Q ss_pred CCCChHHHHHhhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHH
Q 011393 192 NGYDSKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVAS 271 (487)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~ 271 (487)
.+++..|.+.+...|+.+.|.++|+||+|++++|+.|++.|++|+..|++|.+.++||++||++||||||||+||+|+|.
T Consensus 188 ~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 188 LGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred ccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCC-CCcchHHHHHHHHHHHHhcCCCCCC
Q 011393 272 ESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRM-ANENDASRRLKSEFLIQFDGVTSNP 350 (487)
Q Consensus 272 ~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~ 350 (487)
|++.+||.|+.+.+.++|.|++++.++-+|+.|+.+.|++|||||||+|+..|+ ++++++++|+.++||.+|||+....
T Consensus 268 Ec~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~ 347 (491)
T KOG0738|consen 268 ECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTL 347 (491)
T ss_pred hhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999999999999999999987 4688899999999999999987532
Q ss_pred C--CcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHH
Q 011393 351 N--DLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCE 428 (487)
Q Consensus 351 ~--~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~ 428 (487)
. ..|+|+++||.||+||.+++|||.++|+||+|+.+.|..+|+..+...... ++..++.|++.++||||+||.++|+
T Consensus 348 e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-~~~~~~~lae~~eGySGaDI~nvCr 426 (491)
T KOG0738|consen 348 ENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELD-DPVNLEDLAERSEGYSGADITNVCR 426 (491)
T ss_pred ccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCC-CCccHHHHHHHhcCCChHHHHHHHH
Confidence 2 348899999999999999999999999999999999999999999887654 7789999999999999999999999
Q ss_pred HHHHHhHHhhccc-----hhcccccc-CCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCC
Q 011393 429 EAAMMPIRELGTN-----ILTVKANQ-LRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGS 486 (487)
Q Consensus 429 ~A~~~a~~~~~~~-----~~~~~~~~-~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~g~ 486 (487)
+|.++++|+.... +.....+. ..+++.+||+.|+++++||++..++.+|++|.++||+
T Consensus 427 eAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 427 EASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred HHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 9999999976442 11221111 2579999999999999999999999999999999997
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-51 Score=423.41 Aligned_cols=268 Identities=40% Similarity=0.705 Sum_probs=252.7
Q ss_pred hccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccC-CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEec
Q 011393 204 TAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (487)
Q Consensus 204 ~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~-~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~ 282 (487)
+.++.+.|+++|+||+|++++|+.|++.|.+|..+++.|.+.+ .|+++||||||||||||++|+++|++.+++|+.+.+
T Consensus 422 Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkg 501 (693)
T KOG0730|consen 422 REILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKG 501 (693)
T ss_pred hheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccC
Confidence 3456678999999999999999999999999999999999986 899999999999999999999999999999999999
Q ss_pred CccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 011393 283 SSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 362 (487)
Q Consensus 283 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~ 362 (487)
.++.++|+|++++.++.+|..|+...|||||+||||+++..|++...+...|++++||.+|||+... .+|+||++||+
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~--k~V~ViAATNR 579 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEAL--KNVLVIAATNR 579 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccccc--CcEEEEeccCC
Confidence 9999999999999999999999999999999999999999998777788999999999999999865 45999999999
Q ss_pred CCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhcc
Q 011393 363 PQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 440 (487)
Q Consensus 363 ~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~ 440 (487)
|+.||++++| ||++.|+||+||.+.|.+||+.++++.++. .+.+++.||+.|+||||+||.++|++|+..|+++...
T Consensus 580 pd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~-~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~ 658 (693)
T KOG0730|consen 580 PDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFS-EDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE 658 (693)
T ss_pred hhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCC-ccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999 999999999999999999999999998876 5589999999999999999999999999999998533
Q ss_pred chhccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 011393 441 NILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNRE 483 (487)
Q Consensus 441 ~~~~~~~~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~ 483 (487)
...|+.+||.+|++..+++++.++++.|++|.+.
T Consensus 659 ---------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 659 ---------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred ---------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 3568999999999999999999999999999764
No 4
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-50 Score=390.39 Aligned_cols=249 Identities=45% Similarity=0.709 Sum_probs=230.5
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~ 283 (487)
.-+++.|.++++||+|++++++.|++.+.+|+.+|++|... ..||+|||||||||||||+||+|+|++.+++|+.+.++
T Consensus 140 M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgS 219 (406)
T COG1222 140 MEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGS 219 (406)
T ss_pred eeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccH
Confidence 45678899999999999999999999999999999999987 48999999999999999999999999999999999999
Q ss_pred ccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 011393 284 SLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE---NDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 360 (487)
Q Consensus 284 ~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vivI~tt 360 (487)
++..+|+|++.+.++.+|+.|+.++||||||||||+++.+|.+.. +...+|.+-+||.+|||+.. .++|-||+||
T Consensus 220 ElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~--~~nvKVI~AT 297 (406)
T COG1222 220 ELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP--RGNVKVIMAT 297 (406)
T ss_pred HHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC--CCCeEEEEec
Confidence 999999999999999999999999999999999999999987543 33456777889999999975 5569999999
Q ss_pred CCCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhh
Q 011393 361 NKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 438 (487)
Q Consensus 361 n~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~ 438 (487)
|+++.|||||+| ||++.|+||+||.+.|.+||+.|.++..+. .+.+++.||..|+|+||+||+++|.+|.+.|+|+.
T Consensus 298 NR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~ 376 (406)
T COG1222 298 NRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTEAGMFAIRER 376 (406)
T ss_pred CCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc
Confidence 999999999999 999999999999999999999999998876 77899999999999999999999999999999984
Q ss_pred ccchhccccccCCCCcHHHHHHHHHhhCC
Q 011393 439 GTNILTVKANQLRPLRYEDFQKAMAVIRP 467 (487)
Q Consensus 439 ~~~~~~~~~~~~~~l~~~df~~al~~~~p 467 (487)
. ..+|++||.+|..++..
T Consensus 377 R-----------~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 377 R-----------DEVTMEDFLKAVEKVVK 394 (406)
T ss_pred c-----------CeecHHHHHHHHHHHHh
Confidence 2 45899999999987654
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-50 Score=406.32 Aligned_cols=277 Identities=38% Similarity=0.635 Sum_probs=251.2
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccC-CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCcc
Q 011393 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (487)
Q Consensus 207 ~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~-~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l 285 (487)
.-..|.|+|+||+|+++++.+|..++.+|.+++++|..++ .++.|||||||||||||+||+|+|+|.+++|+.|.+.++
T Consensus 502 F~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPEL 581 (802)
T KOG0733|consen 502 FATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPEL 581 (802)
T ss_pred ceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHH
Confidence 3456899999999999999999999999999999999874 668899999999999999999999999999999999999
Q ss_pred chhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 011393 286 TSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE 365 (487)
Q Consensus 286 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ 365 (487)
+.+|+|++++.++.+|..|+...|||||+||+|+|++.|+........|++++||.+|||+..+.+ |.||++||+|+.
T Consensus 582 lNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~g--V~viaATNRPDi 659 (802)
T KOG0733|consen 582 LNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRG--VYVIAATNRPDI 659 (802)
T ss_pred HHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccc--eEEEeecCCCcc
Confidence 999999999999999999999999999999999999999988899999999999999999987554 999999999999
Q ss_pred CCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCC-ChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHhhcc
Q 011393 366 LDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSL-PGGDLERLVRETE--GYSGSDLQALCEEAAMMPIRELGT 440 (487)
Q Consensus 366 ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l-~~~~l~~La~~t~--G~s~~dL~~lv~~A~~~a~~~~~~ 440 (487)
+|++++| ||++.+++++|+.++|..||+.+++++...+ ++.+++.||..+. ||+|+||.+||++|.+.|+++...
T Consensus 660 IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~ 739 (802)
T KOG0733|consen 660 IDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLF 739 (802)
T ss_pred cchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHh
Confidence 9999999 9999999999999999999999999544444 6789999999877 999999999999999999997644
Q ss_pred chhcc-cccc----CCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhC
Q 011393 441 NILTV-KANQ----LRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFG 485 (487)
Q Consensus 441 ~~~~~-~~~~----~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~g 485 (487)
.+... .... ...+++.||++|+.+++||+++.+-+.|+..++.+|
T Consensus 740 ~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 740 EIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred hccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 32211 1111 235889999999999999999999999999888877
No 6
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-49 Score=400.62 Aligned_cols=297 Identities=59% Similarity=0.921 Sum_probs=286.2
Q ss_pred ccCCCChHHHHHhhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHH
Q 011393 190 AGNGYDSKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAV 269 (487)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ai 269 (487)
....++..+...+.++|++..+++.|+|+.|++.+++.+.+++++|..++.+|.+++.+.+++||+||||+|||+|+++|
T Consensus 127 ~~~~~~~~~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~ai 206 (428)
T KOG0740|consen 127 KVKEVDETLIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAI 206 (428)
T ss_pred hhccccchhhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHH
Confidence 45667788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCC
Q 011393 270 ASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN 349 (487)
Q Consensus 270 A~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 349 (487)
|.|.++.|+.++++.+.++|+|++++.++.+|..|+..+|+||||||+|+++.+|.+.+++..+++..+|+.++++....
T Consensus 207 AsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~ 286 (428)
T KOG0740|consen 207 ATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSA 286 (428)
T ss_pred HhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHH
Q 011393 350 PNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEE 429 (487)
Q Consensus 350 ~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~ 429 (487)
+.++|+||||||.||.+|.+++|||.+++++|+|+.+.|..+|.+++.+.+..+.+.+++.|++.|+||+++||.++|.+
T Consensus 287 ~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~ke 366 (428)
T KOG0740|consen 287 PDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKE 366 (428)
T ss_pred CCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHhHHhhcc--chhccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCC
Q 011393 430 AAMMPIRELGT--NILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGS 486 (487)
Q Consensus 430 A~~~a~~~~~~--~~~~~~~~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~g~ 486 (487)
|++..++.... ....+.....++++..||.++++.++|+++.+.++.|++|+.+||+
T Consensus 367 a~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~ 425 (428)
T KOG0740|consen 367 AAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGS 425 (428)
T ss_pred hhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhcc
Confidence 99999998877 4666778888999999999999999999999999999999999997
No 7
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-47 Score=394.70 Aligned_cols=278 Identities=33% Similarity=0.580 Sum_probs=250.8
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccc
Q 011393 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (487)
Q Consensus 207 ~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~ 286 (487)
..+.|+|+|+||+|++++|..+.+.+.+|+.++++|....++..|||||||||||||.+|+|+|.|+...|+.|.+.++.
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 56789999999999999999999999999999999998888888999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCC--CcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 011393 287 SKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMA--NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ 364 (487)
Q Consensus 287 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~ 364 (487)
..|+|++|+++|++|+.|+..+|||||+||+|+|+++|+. +..+.++|+.++||.+|||+.......|+||||||+|+
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 9999999999999999999999999999999999999874 45567999999999999999976778899999999999
Q ss_pred CCCHHHHc--ccccEEEccCCC-HHHHHHHHHHHhccCCCCCChhhHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHhhcc
Q 011393 365 ELDDAVLR--RLVKRIYVPLPD-ENVRRLLLKHKLKGQAFSLPGGDLERLVRETE-GYSGSDLQALCEEAAMMPIRELGT 440 (487)
Q Consensus 365 ~ld~al~~--Rf~~~i~i~~Pd-~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~-G~s~~dL~~lv~~A~~~a~~~~~~ 440 (487)
.|||+++| ||++-+++..++ .+.+..+++...++..++ .+.++..+|+.+. .|+|+|+.++|.+|.+.|++|...
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-edVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-EDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-CCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999875 466678888888877666 6789999999976 799999999999999999998754
Q ss_pred chhcc------ccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhC
Q 011393 441 NILTV------KANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFG 485 (487)
Q Consensus 441 ~~~~~------~~~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~g 485 (487)
.+... .....-.++++||.+++++++||+|..++..|+....+|-
T Consensus 902 ~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 902 DIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 33221 1122245899999999999999999999999999988884
No 8
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-46 Score=363.11 Aligned_cols=277 Identities=47% Similarity=0.791 Sum_probs=252.5
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc--CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccc
Q 011393 209 RSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL--RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (487)
Q Consensus 209 ~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~ 286 (487)
..-.++|+||+|++.++++|++.+.+|++++++|... .+|++|||||||||||||++|+++|++.|+.|+.|..+.++
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt 164 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT 164 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc
Confidence 3446899999999999999999999999999999643 57899999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 011393 287 SKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQEL 366 (487)
Q Consensus 287 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~l 366 (487)
++|+|+.++.++.+|..|..-+|+||||||+|++++.|...++++...+.++|+...||+..+...+|+|+||||+|.+|
T Consensus 165 ~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~Dl 244 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDL 244 (386)
T ss_pred hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccH
Confidence 99999999999999999999999999999999999999889999999999999999999999888889999999999999
Q ss_pred CHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccch----
Q 011393 367 DDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNI---- 442 (487)
Q Consensus 367 d~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~---- 442 (487)
|.+++||+.++++|++|+.++|..|++.+++...+. ++.++..+|..|+||||+||..+|..|+..++|++....
T Consensus 245 DeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~ 323 (386)
T KOG0737|consen 245 DEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLL 323 (386)
T ss_pred HHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccch
Confidence 999999999999999999999999999999998887 789999999999999999999999999999999875431
Q ss_pred --hc----cc-------cccCCCCcHHHHHHHHHhhCCCCCHH--HHHHHHHHHHHhCC
Q 011393 443 --LT----VK-------ANQLRPLRYEDFQKAMAVIRPSLNKS--KWEELEQWNREFGS 486 (487)
Q Consensus 443 --~~----~~-------~~~~~~l~~~df~~al~~~~ps~s~~--~i~~~~~w~~~~g~ 486 (487)
.. .. ....++++++||..++..+.+++.-+ ...++..|++.||+
T Consensus 324 d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 324 DLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred hhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 00 00 01258999999999999888876543 35778899999985
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-45 Score=372.49 Aligned_cols=275 Identities=36% Similarity=0.634 Sum_probs=242.3
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch
Q 011393 209 RSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (487)
Q Consensus 209 ~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~ 287 (487)
..++++|+||+|++.....|.+++.+ +.+|+.|..+ ..|++|||||||||||||+||+++|++++.+|+.+++.++.+
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS 261 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS 261 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc
Confidence 34578999999999999999999988 8888888876 589999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCC--CCcEEEEEecCCCCC
Q 011393 288 KWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNP--NDLVIVMGATNKPQE 365 (487)
Q Consensus 288 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~vivI~ttn~~~~ 365 (487)
.+.|++++.++.+|+.|+...|||+||||||.+.++|...+.+..+|++.+||..||++.... +..|+||||||+|+.
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs 341 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS 341 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc
Confidence 999999999999999999999999999999999999998888899999999999999987653 367999999999999
Q ss_pred CCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchh
Q 011393 366 LDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL 443 (487)
Q Consensus 366 ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~ 443 (487)
||++|+| ||++.|.+..|+..+|.+||+..+++..+. .+.++..||+.|.||.|+||.+||.+|++.|++|+.....
T Consensus 342 lDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~-g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~ 420 (802)
T KOG0733|consen 342 LDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLS-GDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSS 420 (802)
T ss_pred cCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCC-CCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhccc
Confidence 9999999 999999999999999999999999987776 4789999999999999999999999999999998743100
Q ss_pred --------------------c--cc-----------------------------cccCCCCcHHHHHHHHHhhCCCCCHH
Q 011393 444 --------------------T--VK-----------------------------ANQLRPLRYEDFQKAMAVIRPSLNKS 472 (487)
Q Consensus 444 --------------------~--~~-----------------------------~~~~~~l~~~df~~al~~~~ps~s~~ 472 (487)
. +. ..+...|.++||.+|+..++|+..+|
T Consensus 421 ~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakRE 500 (802)
T KOG0733|consen 421 SPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKRE 500 (802)
T ss_pred CccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcc
Confidence 0 00 00113478999999999999987766
Q ss_pred HHHHHHH--HHHHhC
Q 011393 473 KWEELEQ--WNREFG 485 (487)
Q Consensus 473 ~i~~~~~--w~~~~g 485 (487)
.+..+.+ |.+..|
T Consensus 501 GF~tVPdVtW~dIGa 515 (802)
T KOG0733|consen 501 GFATVPDVTWDDIGA 515 (802)
T ss_pred cceecCCCChhhccc
Confidence 6655553 665544
No 10
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.9e-41 Score=372.65 Aligned_cols=276 Identities=39% Similarity=0.667 Sum_probs=245.6
Q ss_pred cCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccc
Q 011393 208 DRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (487)
Q Consensus 208 ~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~ 286 (487)
.+.|.++|+||+|++.+++.|.+.+.+|+.+++.+... ..+++++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 445 ~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~ 524 (733)
T TIGR01243 445 VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL 524 (733)
T ss_pred ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh
Confidence 34678999999999999999999999999999999876 46788999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCC-cchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 011393 287 SKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMAN-ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE 365 (487)
Q Consensus 287 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ 365 (487)
++|+|++++.++.+|..|+...||||||||+|.|++.++.. ......+++++|+..|+++... .+++||+|||+|+.
T Consensus 525 ~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~--~~v~vI~aTn~~~~ 602 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL--SNVVVIAATNRPDI 602 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC--CCEEEEEeCCChhh
Confidence 99999999999999999999999999999999999887643 3345678999999999998653 45999999999999
Q ss_pred CCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchh
Q 011393 366 LDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL 443 (487)
Q Consensus 366 ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~ 443 (487)
||++++| ||++.+++++|+.++|.+||+.++.+.++. ++.+++.||..|+||+|+||.++|++|++.++++......
T Consensus 603 ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~ 681 (733)
T TIGR01243 603 LDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPA 681 (733)
T ss_pred CCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999998 999999999999999999999998876654 5678999999999999999999999999999997532111
Q ss_pred c--c-----ccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCC
Q 011393 444 T--V-----KANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGS 486 (487)
Q Consensus 444 ~--~-----~~~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~g~ 486 (487)
. . .......|+++||.+|+++++|++++++++.|++|.++||.
T Consensus 682 ~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 682 KEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred chhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 0 0 01123479999999999999999999999999999999984
No 11
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-41 Score=341.41 Aligned_cols=240 Identities=38% Similarity=0.614 Sum_probs=218.3
Q ss_pred CCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhc
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW 289 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~ 289 (487)
.+++|+|+-|.|++|+.|.+.+.+ ++.|.-|.++ ++-|+||||.||||||||+||||+|.|.+.+||+.+++++-..+
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 478999999999999999998764 5666667766 57899999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHH
Q 011393 290 VGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDA 369 (487)
Q Consensus 290 ~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~a 369 (487)
+|...+.++++|..|+.+.||||||||||++.++|...+....+..+++||.+|||+..+.+ |+||++||.|+.||++
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeG--iIvigATNfpe~LD~A 455 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEG--IIVIGATNFPEALDKA 455 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCc--eEEEeccCChhhhhHH
Confidence 99999999999999999999999999999999999887777889999999999999987654 9999999999999999
Q ss_pred HHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhcccc
Q 011393 370 VLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKA 447 (487)
Q Consensus 370 l~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~ 447 (487)
|.| ||+++|.+|.||..-|.+||+.|+.+..+. .+.++..||+-|.||+|+||.++|+.|+..|....
T Consensus 456 L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg--------- 525 (752)
T KOG0734|consen 456 LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-EDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG--------- 525 (752)
T ss_pred hcCCCccceeEecCCCCcccHHHHHHHHHhcCCcc-cCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC---------
Confidence 999 999999999999999999999999987654 57899999999999999999999999999886543
Q ss_pred ccCCCCcHHHHHHHHHhh
Q 011393 448 NQLRPLRYEDFQKAMAVI 465 (487)
Q Consensus 448 ~~~~~l~~~df~~al~~~ 465 (487)
...+++.|++.|-.++
T Consensus 526 --a~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 526 --AEMVTMKHLEFAKDRI 541 (752)
T ss_pred --cccccHHHHhhhhhhe
Confidence 2358888988876544
No 12
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-40 Score=348.40 Aligned_cols=258 Identities=45% Similarity=0.723 Sum_probs=238.4
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhc-cCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTG-LRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~ 283 (487)
.+.-..+.++|+|++|++.+++.+++.+.+|+.+++.|.. ..++++++|||||||||||+||+++|++++.+|+.+..+
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 4455678999999999999999999999999999999887 357778999999999999999999999999999999999
Q ss_pred ccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 011393 284 SLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 363 (487)
Q Consensus 284 ~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~ 363 (487)
++.++|+|+++++++.+|..|+...||||||||+|++++.++........+++++++.+|+++.... .|+||++||.|
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~--~v~vi~aTN~p 388 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE--GVLVIAATNRP 388 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC--ceEEEecCCCc
Confidence 9999999999999999999999999999999999999999988777777899999999999987654 49999999999
Q ss_pred CCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCC-CChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhcc
Q 011393 364 QELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFS-LPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 440 (487)
Q Consensus 364 ~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~-l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~ 440 (487)
+.+|++++| ||+..++|++||.++|.+||+.++...... ..+.++..+++.|+||+++||..+|++|++.++++..
T Consensus 389 ~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~- 467 (494)
T COG0464 389 DDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR- 467 (494)
T ss_pred cccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-
Confidence 999999999 999999999999999999999999976554 4678999999999999999999999999999998853
Q ss_pred chhccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 011393 441 NILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQW 480 (487)
Q Consensus 441 ~~~~~~~~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w 480 (487)
...++++||.+|++.++|+++ |++|
T Consensus 468 ---------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 468 ---------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred ---------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 356999999999999999988 8888
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-39 Score=298.60 Aligned_cols=246 Identities=41% Similarity=0.674 Sum_probs=224.2
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCcc
Q 011393 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (487)
Q Consensus 207 ~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l 285 (487)
.++.|.+++.||+|++-.|+.+++.+.+|+.+.+++... ..||+|+|||||||||||+||+++|+...+.|+.+.++++
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 356799999999999999999999999999999999877 4889999999999999999999999999999999999999
Q ss_pred chhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 011393 286 TSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE---NDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 362 (487)
Q Consensus 286 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~ 362 (487)
..+|.|++.+.++++|..|+.+.|+||||||+|.++.+|-+.. +....+++-+||.+|||+... .+|-||.+||+
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatnr 303 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATNR 303 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecCc
Confidence 9999999999999999999999999999999999998876543 444677888999999999764 45999999999
Q ss_pred CCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhcc
Q 011393 363 PQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 440 (487)
Q Consensus 363 ~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~ 440 (487)
.+.|||+++| |+++.|+||+||..+++-+|..+..+..+. ++.+++.+..+.+..|++||.++|++|.+.|+|+...
T Consensus 304 adtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls-~~vdle~~v~rpdkis~adi~aicqeagm~avr~nry 382 (408)
T KOG0727|consen 304 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS-DEVDLEDLVARPDKISGADINAICQEAGMLAVRENRY 382 (408)
T ss_pred ccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC-cccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcce
Confidence 9999999999 999999999999999999999999988776 7789999999999999999999999999999998432
Q ss_pred chhccccccCCCCcHHHHHHHHHhhC
Q 011393 441 NILTVKANQLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 441 ~~~~~~~~~~~~l~~~df~~al~~~~ 466 (487)
.+...||+++.+...
T Consensus 383 -----------vvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 383 -----------VVLQKDFEKAYKTVV 397 (408)
T ss_pred -----------eeeHHHHHHHHHhhc
Confidence 367789999987543
No 14
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.2e-39 Score=299.81 Aligned_cols=243 Identities=30% Similarity=0.486 Sum_probs=211.2
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhc
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW 289 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~ 289 (487)
.+.++|+|++|++++|+.++-.+. .+..|+.|..+ .|++||||||||||||++|+++|++...+++.+.+..+.+.+
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~W--APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIME-YLENPERFGDW--APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHH-HhhChHHhccc--CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 468899999999999998765443 44566666554 568999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCC-CcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCH
Q 011393 290 VGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMA-NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDD 368 (487)
Q Consensus 290 ~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~ 368 (487)
+|+..+.++.+++.|+...|||+||||+|.++-.|.= ...+...++.+.||..|||+..+. .|+.||+||+|..||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ene--GVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENE--GVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCC--ceEEEeecCChhhcCH
Confidence 9999999999999999999999999999999766542 222335688999999999998654 4999999999999999
Q ss_pred HHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHH-HHHHHHHHHhHHhhccchhcccc
Q 011393 369 AVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQ-ALCEEAAMMPIRELGTNILTVKA 447 (487)
Q Consensus 369 al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~-~lv~~A~~~a~~~~~~~~~~~~~ 447 (487)
++++||...|+|.+|+.++|.+|++.+++..++++ +..++.++..|.|+||+||. .++..|...|+.+..
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~-------- 340 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV-DADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR-------- 340 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc-ccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch--------
Confidence 99999999999999999999999999999998885 45699999999999999996 567778888887643
Q ss_pred ccCCCCcHHHHHHHHHhhCCCC
Q 011393 448 NQLRPLRYEDFQKAMAVIRPSL 469 (487)
Q Consensus 448 ~~~~~l~~~df~~al~~~~ps~ 469 (487)
..++.+||..|+++.++..
T Consensus 341 ---e~v~~edie~al~k~r~~r 359 (368)
T COG1223 341 ---EKVEREDIEKALKKERKRR 359 (368)
T ss_pred ---hhhhHHHHHHHHHhhcccc
Confidence 3478899999999877643
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-39 Score=300.89 Aligned_cols=257 Identities=36% Similarity=0.649 Sum_probs=231.1
Q ss_pred hHHHHHhhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 196 SKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
......+...-++..|...++||+|++..++.|.+.+++|+.+++-|..+ .+||+|+|+|||||||||++||++|.+.+
T Consensus 151 ~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 151 SEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred hhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 44445556667889999999999999999999999999999999999987 58999999999999999999999999999
Q ss_pred CeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcch---HHHHHHHHHHHHhcCCCCCCC
Q 011393 275 ATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANEND---ASRRLKSEFLIQFDGVTSNPN 351 (487)
Q Consensus 275 ~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~---~~~~~~~~ll~~l~~~~~~~~ 351 (487)
..|+.+.+..+...|+|.+.+.+++.|..|+...|+||||||+|.+..+|.+++.. ...+..-+||.++||+...
T Consensus 231 aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~-- 308 (424)
T KOG0652|consen 231 ATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD-- 308 (424)
T ss_pred chHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc--
Confidence 99999999999999999999999999999999999999999999999988765433 3455566888899998754
Q ss_pred CcEEEEEecCCCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHH
Q 011393 352 DLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEE 429 (487)
Q Consensus 352 ~~vivI~ttn~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~ 429 (487)
..|-||++||+.+-|||+++| |+++.|+||.|+.+.|.+|++.+.++..+. ++..+++||+.|++|+|++.+++|-+
T Consensus 309 ~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTddFNGAQcKAVcVE 387 (424)
T KOG0652|consen 309 DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTDDFNGAQCKAVCVE 387 (424)
T ss_pred cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhcccccCchhheeeehh
Confidence 559999999999999999999 999999999999999999999999988776 78899999999999999999999999
Q ss_pred HHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhC
Q 011393 430 AAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 430 A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ 466 (487)
|.+.|+|+.. ..++.+||.+++-.++
T Consensus 388 AGMiALRr~a-----------tev~heDfmegI~eVq 413 (424)
T KOG0652|consen 388 AGMIALRRGA-----------TEVTHEDFMEGILEVQ 413 (424)
T ss_pred hhHHHHhccc-----------ccccHHHHHHHHHHHH
Confidence 9999999843 3478899998886543
No 16
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-39 Score=330.38 Aligned_cols=227 Identities=39% Similarity=0.650 Sum_probs=212.7
Q ss_pred CCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhc
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW 289 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~ 289 (487)
....|+||+|+.++++.|.+.+.+|.+++.+|... .+...|||||||||||||+||.++|...+..|+.+.+.++.++|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 34899999999999999999999999999999976 35678999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHH
Q 011393 290 VGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDA 369 (487)
Q Consensus 290 ~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~a 369 (487)
+|.+++.++.+|..|+..+|||||+||+|+++++|+.+..+...|+.++||.+|||...- +.|.|+++|.+|+.|||+
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl--~GV~i~aaTsRpdliDpA 819 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL--DGVYILAATSRPDLIDPA 819 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc--ceEEEEEecCCccccCHh
Confidence 999999999999999999999999999999999999888889999999999999999764 449999999999999999
Q ss_pred HHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhcc
Q 011393 370 VLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 440 (487)
Q Consensus 370 l~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~ 440 (487)
++| |+++.+++++|+..+|.+|++.+....... ++.+++.+|..|+||+|+||..++-.|.+.|+++...
T Consensus 820 LLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~ 891 (952)
T KOG0735|consen 820 LLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILK 891 (952)
T ss_pred hcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 999 999999999999999999999877655544 7889999999999999999999999999999888644
No 17
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.8e-38 Score=328.96 Aligned_cols=256 Identities=25% Similarity=0.376 Sum_probs=221.6
Q ss_pred CCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhcc
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWV 290 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~ 290 (487)
++++|+||+|++.+|+.|.+....+... .......++++||||||||||||++|+++|++++.+|+.++++.+.++|+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~~~--~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFSKQ--ASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhhHH--HHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 5789999999999999998765322111 11112366799999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEechhhhhhccCC-CCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHH
Q 011393 291 GEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRM-ANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDA 369 (487)
Q Consensus 291 g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~a 369 (487)
|+++..++.+|..|+...||||||||||.++..+. .++.+...+++..|+..|+.. ..+|+||+|||.++.||++
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~~Ld~a 376 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK----KSPVFVVATANNIDLLPLE 376 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----CCceEEEEecCChhhCCHH
Confidence 99999999999999999999999999999987643 345566788999999998743 3459999999999999999
Q ss_pred HHc--ccccEEEccCCCHHHHHHHHHHHhccCCCC-CChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhccc
Q 011393 370 VLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFS-LPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVK 446 (487)
Q Consensus 370 l~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~-l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~ 446 (487)
++| ||+..+++++|+.++|.+||+.++.+.... ..+.+++.|+..|+||||+||.++|.+|+..|+.+
T Consensus 377 llR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~--------- 447 (489)
T CHL00195 377 ILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE--------- 447 (489)
T ss_pred HhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc---------
Confidence 998 999999999999999999999999886433 35778999999999999999999999999888764
Q ss_pred cccCCCCcHHHHHHHHHhhCCC--CCHHHHHHHHHHHHHh
Q 011393 447 ANQLRPLRYEDFQKAMAVIRPS--LNKSKWEELEQWNREF 484 (487)
Q Consensus 447 ~~~~~~l~~~df~~al~~~~ps--~s~~~i~~~~~w~~~~ 484 (487)
.++++.+||..|++.++|. +..++++.+++|+..-
T Consensus 448 ---~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 448 ---KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred ---CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 2569999999999999996 5788999999999753
No 18
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.8e-38 Score=322.51 Aligned_cols=249 Identities=39% Similarity=0.634 Sum_probs=222.8
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccC-CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~-~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~ 284 (487)
-+++.|.++|+||+|++.+++.|++.+.+|+.++++|...+ .+++++|||||||||||++|+++|++++.+|+.+.+++
T Consensus 135 ~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~ 214 (398)
T PTZ00454 135 QMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSE 214 (398)
T ss_pred cccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH
Confidence 35567999999999999999999999999999999998764 67899999999999999999999999999999999999
Q ss_pred cchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 011393 285 LTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMAN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 361 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn 361 (487)
+..+|.|+++..++.+|..|+...|+||||||+|.++..+.+. ......+.+.+|+..|++.... .+++||+|||
T Consensus 215 l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN 292 (398)
T PTZ00454 215 FVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATN 292 (398)
T ss_pred HHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecC
Confidence 9999999999999999999999999999999999998876432 2234567788999999987543 3589999999
Q ss_pred CCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhc
Q 011393 362 KPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG 439 (487)
Q Consensus 362 ~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~ 439 (487)
+++.||++++| ||+..|+|++|+.++|..||+.++.+.++. .+.++..++..|+||+|+||.++|++|.+.|+++.
T Consensus 293 ~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~- 370 (398)
T PTZ00454 293 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN- 370 (398)
T ss_pred CchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-
Confidence 99999999998 999999999999999999999999887765 56789999999999999999999999999999873
Q ss_pred cchhccccccCCCCcHHHHHHHHHhhCCC
Q 011393 440 TNILTVKANQLRPLRYEDFQKAMAVIRPS 468 (487)
Q Consensus 440 ~~~~~~~~~~~~~l~~~df~~al~~~~ps 468 (487)
...|+.+||.+|++++...
T Consensus 371 ----------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 371 ----------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred ----------CCccCHHHHHHHHHHHHhc
Confidence 1368999999999987543
No 19
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-38 Score=291.36 Aligned_cols=251 Identities=37% Similarity=0.635 Sum_probs=226.9
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccC-CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~-~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~ 283 (487)
..+++.|..+++-|+|++..++.+++.+.+|..+|++|..++ .-|+|+|||||||||||.||+++|+...+.|+.++++
T Consensus 136 MmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgs 215 (404)
T KOG0728|consen 136 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 215 (404)
T ss_pred HhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechH
Confidence 467889999999999999999999999999999999999874 5578999999999999999999999999999999999
Q ss_pred ccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 011393 284 SLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE---NDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 360 (487)
Q Consensus 284 ~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vivI~tt 360 (487)
++..+|+|+..+.++.+|-.|+.+.|+|||+||||++...|.++. +....+..-+||.++||+... .++-||.+|
T Consensus 216 elvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimat 293 (404)
T KOG0728|consen 216 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMAT 293 (404)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEec
Confidence 999999999999999999999999999999999999998886543 344567777899999998764 458999999
Q ss_pred CCCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhh
Q 011393 361 NKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 438 (487)
Q Consensus 361 n~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~ 438 (487)
|+.+-||++++| |+++.|+||+|+.+.|.+|++.+-++.++. ...++..+|+...|.||++++.+|.+|.+.|+|+.
T Consensus 294 nridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rgi~l~kiaekm~gasgaevk~vcteagm~alrer 372 (404)
T KOG0728|consen 294 NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER 372 (404)
T ss_pred cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-cccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh
Confidence 999999999999 999999999999999999999998887764 66799999999999999999999999999999873
Q ss_pred ccchhccccccCCCCcHHHHHHHHHhhCCCC
Q 011393 439 GTNILTVKANQLRPLRYEDFQKAMAVIRPSL 469 (487)
Q Consensus 439 ~~~~~~~~~~~~~~l~~~df~~al~~~~ps~ 469 (487)
. .++|.+||+-|..++-..-
T Consensus 373 r-----------vhvtqedfemav~kvm~k~ 392 (404)
T KOG0728|consen 373 R-----------VHVTQEDFEMAVAKVMQKD 392 (404)
T ss_pred h-----------ccccHHHHHHHHHHHHhcc
Confidence 2 4689999999987765433
No 20
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-38 Score=333.91 Aligned_cols=245 Identities=39% Similarity=0.641 Sum_probs=220.5
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch
Q 011393 209 RSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (487)
Q Consensus 209 ~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~ 287 (487)
..+.++|.|++|.+++|+.|.|+|.+ ++.|+.|..+ .+.|+|+||+||||||||+||+|+|.|.+.||+.+++++++.
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 34569999999999999999999875 5566666655 688999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCC----CcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 011393 288 KWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMA----NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 363 (487)
Q Consensus 288 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~----~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~ 363 (487)
.++|.....++.+|..|+...||||||||||.+...|+. +.++.....+++||.+|||.... ..|+|+++||++
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNRP 460 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCCc
Confidence 999999999999999999999999999999999998842 34555677899999999999765 559999999999
Q ss_pred CCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccc
Q 011393 364 QELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTN 441 (487)
Q Consensus 364 ~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~ 441 (487)
+-||++++| ||++.|++++|+...|.+|++.|+++..+..++.++..||.+|.||+|+||.++|.+|+..|.|+-
T Consensus 461 d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~--- 537 (774)
T KOG0731|consen 461 DILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG--- 537 (774)
T ss_pred cccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc---
Confidence 999999999 999999999999999999999999998876678899999999999999999999999999998873
Q ss_pred hhccccccCCCCcHHHHHHHHHhhCC
Q 011393 442 ILTVKANQLRPLRYEDFQKAMAVIRP 467 (487)
Q Consensus 442 ~~~~~~~~~~~l~~~df~~al~~~~p 467 (487)
...|+..||..|++++.-
T Consensus 538 --------~~~i~~~~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 538 --------LREIGTKDLEYAIERVIA 555 (774)
T ss_pred --------cCccchhhHHHHHHHHhc
Confidence 345889999999985443
No 21
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-39 Score=300.79 Aligned_cols=248 Identities=37% Similarity=0.642 Sum_probs=223.7
Q ss_pred hccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEec
Q 011393 204 TAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (487)
Q Consensus 204 ~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~ 282 (487)
-.-+++.|..++.||+|++..++.+++.+.+|+.+|+++... .+||++|+|||+||||||+||+|+|+...++|+.+-+
T Consensus 173 vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvG 252 (440)
T KOG0726|consen 173 VMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVG 252 (440)
T ss_pred eeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhh
Confidence 345788899999999999999999999999999999999987 5899999999999999999999999999999999999
Q ss_pred CccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchH---HHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 011393 283 SSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDA---SRRLKSEFLIQFDGVTSNPNDLVIVMGA 359 (487)
Q Consensus 283 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~---~~~~~~~ll~~l~~~~~~~~~~vivI~t 359 (487)
+++..+|.|+..+.++.+|..|..++|+|+||||||.+..+|-+..... ..+..-+||.++||+..+ +.|-||.+
T Consensus 253 seLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr--gDvKvimA 330 (440)
T KOG0726|consen 253 SELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVKVIMA 330 (440)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc--CCeEEEEe
Confidence 9999999999999999999999999999999999999998875443333 344556888899998764 44999999
Q ss_pred cCCCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHh
Q 011393 360 TNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 360 tn~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~ 437 (487)
||+.+.|||+++| |+++.|+|+.||...++.||..+..+..+. .+..++.+...-+.+||+||.++|.+|-+.|+|+
T Consensus 331 Tnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~-~dVnle~li~~kddlSGAdIkAictEaGllAlRe 409 (440)
T KOG0726|consen 331 TNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA-EDVNLEELIMTKDDLSGADIKAICTEAGLLALRE 409 (440)
T ss_pred cccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchh-ccccHHHHhhcccccccccHHHHHHHHhHHHHHH
Confidence 9999999999999 999999999999999999999999887765 6789999999999999999999999999999997
Q ss_pred hccchhccccccCCCCcHHHHHHHHHhh
Q 011393 438 LGTNILTVKANQLRPLRYEDFQKAMAVI 465 (487)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~~df~~al~~~ 465 (487)
.. -.++++||..|.+.+
T Consensus 410 rR-----------m~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 410 RR-----------MKVTMEDFKKAKEKV 426 (440)
T ss_pred HH-----------hhccHHHHHHHHHHH
Confidence 53 248899999998754
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=5.1e-37 Score=315.52 Aligned_cols=253 Identities=43% Similarity=0.664 Sum_probs=223.7
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~ 284 (487)
-+...|.++|+||+|++++++.|.+.+.+|+.+++.|... ..++++||||||||||||++|+++|++++.+|+.+++++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 3556789999999999999999999999999999999876 467899999999999999999999999999999999999
Q ss_pred cchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 011393 285 LTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE---NDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 361 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn 361 (487)
+...|.|+.+..++.+|..++...|+||||||+|.+++.+.+.. .....+.+.+++..+++.... .+++||+|||
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~--~~v~VI~aTn 278 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR--GNVKIIAATN 278 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC--CCEEEEEecC
Confidence 99999999999999999999999999999999999998765432 223455667788888876543 4589999999
Q ss_pred CCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhc
Q 011393 362 KPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG 439 (487)
Q Consensus 362 ~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~ 439 (487)
.++.+|++++| ||+..|+|++|+.++|.+||+.++.+..+. .+.++..|+..|+||+++||.++|++|++.|+++.
T Consensus 279 ~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~- 356 (389)
T PRK03992 279 RIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAGMFAIRDD- 356 (389)
T ss_pred ChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-
Confidence 99999999998 999999999999999999999999876654 45789999999999999999999999999998862
Q ss_pred cchhccccccCCCCcHHHHHHHHHhhCCCCCHH
Q 011393 440 TNILTVKANQLRPLRYEDFQKAMAVIRPSLNKS 472 (487)
Q Consensus 440 ~~~~~~~~~~~~~l~~~df~~al~~~~ps~s~~ 472 (487)
...|+.+||.+|+.+++++...+
T Consensus 357 ----------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 ----------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ----------CCCcCHHHHHHHHHHHhcccccc
Confidence 24589999999999999876554
No 23
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-37 Score=287.19 Aligned_cols=248 Identities=35% Similarity=0.599 Sum_probs=223.2
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~ 283 (487)
.-+++.|.+++.|++|-.+.++.|++.+.+|+.+|+.|-.+ ..|+++||||||||||||++||++|++.++.|+.+-++
T Consensus 166 m~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigs 245 (435)
T KOG0729|consen 166 MQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS 245 (435)
T ss_pred EEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhH
Confidence 34778899999999999999999999999999999998877 58899999999999999999999999999999999999
Q ss_pred ccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 011393 284 SLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMAN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 360 (487)
Q Consensus 284 ~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~tt 360 (487)
++..+|+|+..+.++.+|+.|+..+.||||+||||.+.+.|-++ .+....+..-+++.++||+.. .+++-|+.+|
T Consensus 246 elvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp--rgnikvlmat 323 (435)
T KOG0729|consen 246 ELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP--RGNIKVLMAT 323 (435)
T ss_pred HHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC--CCCeEEEeec
Confidence 99999999999999999999999999999999999999987543 334456667788899999864 5669999999
Q ss_pred CCCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhh
Q 011393 361 NKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 438 (487)
Q Consensus 361 n~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~ 438 (487)
|+|+.|||+++| |+++.++|.+||.+.|..||+.|.+...++ .+.-++.||+.+..-+|++|+.+|.+|-+.|++..
T Consensus 324 nrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsve-rdir~ellarlcpnstgaeirsvcteagmfairar 402 (435)
T KOG0729|consen 324 NRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR 402 (435)
T ss_pred CCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccc-cchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH
Confidence 999999999999 999999999999999999999998887766 56788999999999999999999999999999864
Q ss_pred ccchhccccccCCCCcHHHHHHHHHhhC
Q 011393 439 GTNILTVKANQLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 439 ~~~~~~~~~~~~~~l~~~df~~al~~~~ 466 (487)
. ...|..||.+|+.++.
T Consensus 403 r-----------k~atekdfl~av~kvv 419 (435)
T KOG0729|consen 403 R-----------KVATEKDFLDAVNKVV 419 (435)
T ss_pred h-----------hhhhHHHHHHHHHHHH
Confidence 2 2357789999987643
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2e-36 Score=311.55 Aligned_cols=250 Identities=38% Similarity=0.638 Sum_probs=221.2
Q ss_pred hhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 203 NTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 203 ~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
....+++.|.++|+||+|++.+++.|.+++.+|+.++++|... ..++.++|||||||||||++|+++|++++.+|+.+.
T Consensus 170 ~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~ 249 (438)
T PTZ00361 170 SVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVV 249 (438)
T ss_pred hhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEe
Confidence 3345778899999999999999999999999999999998876 367889999999999999999999999999999999
Q ss_pred cCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 011393 282 ASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE---NDASRRLKSEFLIQFDGVTSNPNDLVIVMG 358 (487)
Q Consensus 282 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ 358 (487)
++++...|.|+....++.+|..|....|+||||||||.++..+.... .....+.+.+++..++++... ..+.||+
T Consensus 250 ~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ 327 (438)
T PTZ00361 250 GSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIM 327 (438)
T ss_pred cchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEE
Confidence 99999999999999999999999999999999999999998765322 223456667888888887543 3589999
Q ss_pred ecCCCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Q 011393 359 ATNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIR 436 (487)
Q Consensus 359 ttn~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~ 436 (487)
|||+++.+|++++| ||+..|+|+.|+.++|.+||+.++.+..+. .+.++..++..++||+++||.++|.+|++.|++
T Consensus 328 ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr 406 (438)
T PTZ00361 328 ATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEAGLLALR 406 (438)
T ss_pred ecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999987 999999999999999999999999887654 567899999999999999999999999999988
Q ss_pred hhccchhccccccCCCCcHHHHHHHHHhhC
Q 011393 437 ELGTNILTVKANQLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~~~df~~al~~~~ 466 (487)
+. ...|+.+||.+|+.++.
T Consensus 407 ~~-----------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 407 ER-----------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred hc-----------CCccCHHHHHHHHHHHH
Confidence 73 24589999999998864
No 25
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-36 Score=311.64 Aligned_cols=242 Identities=39% Similarity=0.624 Sum_probs=215.9
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhc
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW 289 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~ 289 (487)
...++|.|++|.+++|+.|.+.|........+..-..+.|+|+||+||||||||+||+++|.+.+.||+.++.+++...+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 46799999999999999999988754433333333357889999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCC---CcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 011393 290 VGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMA---NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQEL 366 (487)
Q Consensus 290 ~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~l 366 (487)
+|.....+|++|..|+..+||||||||+|.+...|.. +.++.....++++|.+|||...+ ..|+|+++||+|+-+
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~--~gviviaaTNRpdVl 301 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN--EGVIVIAATNRPDVL 301 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC--CceEEEecCCCcccc
Confidence 9999999999999999999999999999999988863 34555667899999999999854 459999999999999
Q ss_pred CHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhc
Q 011393 367 DDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILT 444 (487)
Q Consensus 367 d~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~ 444 (487)
|++++| ||++.|.++.||...|.+|++.|+++..+. .+.++..+|+.|.||+++||.+++.+|+..+.|+..
T Consensus 302 D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~----- 375 (596)
T COG0465 302 DPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK----- 375 (596)
T ss_pred hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC-----
Confidence 999999 999999999999999999999999988877 778999999999999999999999999999988743
Q ss_pred cccccCCCCcHHHHHHHHHhh
Q 011393 445 VKANQLRPLRYEDFQKAMAVI 465 (487)
Q Consensus 445 ~~~~~~~~l~~~df~~al~~~ 465 (487)
..+++.||.+|+.++
T Consensus 376 ------~~i~~~~i~ea~drv 390 (596)
T COG0465 376 ------KEITMRDIEEAIDRV 390 (596)
T ss_pred ------eeEeccchHHHHHHH
Confidence 458888999988754
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=7.5e-35 Score=309.20 Aligned_cols=245 Identities=41% Similarity=0.667 Sum_probs=214.9
Q ss_pred cCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccc
Q 011393 208 DRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (487)
Q Consensus 208 ~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~ 286 (487)
+..|.++|+||+|++++++.|.+++.. +..+..+... ..+++++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 446789999999999999999998775 5666666544 46778999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 011393 287 SKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMAN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 363 (487)
Q Consensus 287 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~ 363 (487)
..+.|.+.+.++.+|..++...|+||||||+|.++..+... ......+.+++|+.+|+++... ..++||+|||.|
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~~ 203 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNRP 203 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC--CCeEEEEecCCh
Confidence 99999999999999999999999999999999999877542 2344567889999999988654 349999999999
Q ss_pred CCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccc
Q 011393 364 QELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTN 441 (487)
Q Consensus 364 ~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~ 441 (487)
+.||++++| ||+..++++.|+.++|.+|++.++.+..+. ++.++..++..+.||+++||.++|++|+..+.++.
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~--- 279 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAALLAARKN--- 279 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 999999998 999999999999999999999999876654 56789999999999999999999999998887652
Q ss_pred hhccccccCCCCcHHHHHHHHHhhCC
Q 011393 442 ILTVKANQLRPLRYEDFQKAMAVIRP 467 (487)
Q Consensus 442 ~~~~~~~~~~~l~~~df~~al~~~~p 467 (487)
...|+.+||.+|+..+..
T Consensus 280 --------~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 280 --------KTEITMNDIEEAIDRVIA 297 (495)
T ss_pred --------CCCCCHHHHHHHHHHHhc
Confidence 246999999999998754
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=8e-34 Score=290.46 Aligned_cols=246 Identities=43% Similarity=0.688 Sum_probs=214.8
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~ 284 (487)
-+.+.|.+.|+||+|++.+++.|.+.+..|+.+++.|... ..+++++|||||||||||++|+++|++++.+|+.+.+.+
T Consensus 112 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~ 191 (364)
T TIGR01242 112 EVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 191 (364)
T ss_pred eeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHH
Confidence 3456789999999999999999999999999999988866 367889999999999999999999999999999999999
Q ss_pred cchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 011393 285 LTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE---NDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 361 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn 361 (487)
+...+.|.....++.+|..++...|+||||||+|.++..+.... .....+.+.+++..+++.... .++.||+|||
T Consensus 192 l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~--~~v~vI~ttn 269 (364)
T TIGR01242 192 LVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR--GNVKVIAATN 269 (364)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEecC
Confidence 99999999999999999999999999999999999987664322 223345667778788776433 4589999999
Q ss_pred CCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhc
Q 011393 362 KPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG 439 (487)
Q Consensus 362 ~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~ 439 (487)
.++.+|+++++ ||+..++|+.|+.++|.+||+.++....+. .+.++..|+..++||+++||.++|.+|.+.|+++.
T Consensus 270 ~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~- 347 (364)
T TIGR01242 270 RPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE- 347 (364)
T ss_pred ChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-
Confidence 99999999998 999999999999999999999998776544 44689999999999999999999999999998863
Q ss_pred cchhccccccCCCCcHHHHHHHHHhh
Q 011393 440 TNILTVKANQLRPLRYEDFQKAMAVI 465 (487)
Q Consensus 440 ~~~~~~~~~~~~~l~~~df~~al~~~ 465 (487)
...|+.+||.+|+.++
T Consensus 348 ----------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 ----------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred ----------CCccCHHHHHHHHHHh
Confidence 2459999999999875
No 28
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-34 Score=298.68 Aligned_cols=255 Identities=38% Similarity=0.629 Sum_probs=231.1
Q ss_pred CCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhc
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW 289 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~ 289 (487)
+++. ++++|.......+.+.+.+|++.+..+... .++++++|+|||||||||.+++++|++.++.++.++++++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5677 899999999999999999999999998766 57889999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcC-CcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCH
Q 011393 290 VGEGEKLVRTLFMVAISRQ-PCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDD 368 (487)
Q Consensus 290 ~g~~~~~i~~~f~~a~~~~-p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~ 368 (487)
.|++++.++..|+.|...+ |++|||||+|.+++++..... ...++..+++..|++... ..+++||++||+|..||+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld~ 335 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLDP 335 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccCh
Confidence 9999999999999999999 999999999999998876555 688999999999999874 455999999999999999
Q ss_pred HHHc-ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhcccc
Q 011393 369 AVLR-RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKA 447 (487)
Q Consensus 369 al~~-Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~ 447 (487)
+++| ||++.+.+..|+..+|.+|++.++++.++. ++.++..+|..+.||+|+||..+|.+|++.++++
T Consensus 336 alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 336 ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 9998 999999999999999999999999998877 7899999999999999999999999999999887
Q ss_pred ccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHH--HHHHhCC
Q 011393 448 NQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQ--WNREFGS 486 (487)
Q Consensus 448 ~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~--w~~~~g~ 486 (487)
++++|..|+..++|+-.++.+-+..+ |.++.|.
T Consensus 405 ------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGl 439 (693)
T KOG0730|consen 405 ------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGL 439 (693)
T ss_pred ------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCH
Confidence 56788888888888776666544332 6666653
No 29
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=3.7e-33 Score=291.02 Aligned_cols=253 Identities=31% Similarity=0.543 Sum_probs=206.5
Q ss_pred hhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCe----
Q 011393 202 INTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQAT---- 276 (487)
Q Consensus 202 ~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~---- 276 (487)
+...+.++.|+++|+||+|++.+++.|++.+.+|+.++++|... ..+++++|||||||||||++|+++|++++.+
T Consensus 168 ~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~ 247 (512)
T TIGR03689 168 VEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAE 247 (512)
T ss_pred HhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccc
Confidence 34456788899999999999999999999999999999999865 4678899999999999999999999997543
Q ss_pred ------EEEEecCccchhccchhHHHHHHHHHHHHhc----CCcEEEechhhhhhccCCCC-cchHHHHHHHHHHHHhcC
Q 011393 277 ------FFNVSASSLTSKWVGEGEKLVRTLFMVAISR----QPCVIFIDEIDSIMSTRMAN-ENDASRRLKSEFLIQFDG 345 (487)
Q Consensus 277 ------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~Il~IDEiD~l~~~~~~~-~~~~~~~~~~~ll~~l~~ 345 (487)
|+.+..+++..+|+|++++.++.+|..++.. .|+||||||+|.++..++.+ ..+...+++.+|+..|++
T Consensus 248 ~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 248 TGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred cCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence 6677788899999999999999999988763 79999999999999887643 344456788999999999
Q ss_pred CCCCCCCcEEEEEecCCCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCC----------ChhhHHHHHH
Q 011393 346 VTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSL----------PGGDLERLVR 413 (487)
Q Consensus 346 ~~~~~~~~vivI~ttn~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l----------~~~~l~~La~ 413 (487)
+... .+++||+|||+++.||++++| ||+..|+|+.|+.++|.+||+.++... +.+ ...++..+++
T Consensus 328 l~~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~l~~~~g~~~a~~~al~~ 404 (512)
T TIGR03689 328 VESL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPLDADLAEFDGDREATAAALIQ 404 (512)
T ss_pred cccC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCchHHHHHhcCCCHHHHHHHHH
Confidence 8654 459999999999999999999 999999999999999999999998642 222 1122233322
Q ss_pred H-----------------------------cCCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHh
Q 011393 414 E-----------------------------TEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAV 464 (487)
Q Consensus 414 ~-----------------------------t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~ 464 (487)
. ++.+||++|.++|.+|...|+++... .....|+.+|+..|+..
T Consensus 405 ~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~-------~~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 405 RAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT-------GGQVGLRIEHLLAAVLD 477 (512)
T ss_pred HHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh-------cCCcCcCHHHHHHHHHH
Confidence 2 44577888888888888888776421 12357999999999864
No 30
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-34 Score=310.13 Aligned_cols=261 Identities=38% Similarity=0.628 Sum_probs=235.2
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEEEecC
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSAS 283 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~v~~~ 283 (487)
...++|++|+|++.++..|+++|..|+.+++.|... ..|++++||+||||||||+.|+++|..+ ...|+.-++.
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 357899999999999999999999999999999977 5888999999999999999999999886 4677888899
Q ss_pred ccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 011393 284 SLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 363 (487)
Q Consensus 284 ~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~ 363 (487)
+..++|+|+.++.++.+|+.|+..+|+|||+||||.|++.|+.........++..||..|+|+... +.|+||||||+|
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsR--gqVvvigATnRp 416 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSR--GQVVVIGATNRP 416 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCC--CceEEEcccCCc
Confidence 999999999999999999999999999999999999999998877888889999999999999875 459999999999
Q ss_pred CCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccc
Q 011393 364 QELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTN 441 (487)
Q Consensus 364 ~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~ 441 (487)
+.+|++++| ||++.++|++|+.+.|..|+..+..+....++...+..||+.|.||.|+||+++|.+|++.++++..+.
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq 496 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQ 496 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCe
Confidence 999999999 999999999999999999999999998888889999999999999999999999999999999987665
Q ss_pred hhcccc-----ccCCCCcHHHHHHHHHhhCCCCCHH
Q 011393 442 ILTVKA-----NQLRPLRYEDFQKAMAVIRPSLNKS 472 (487)
Q Consensus 442 ~~~~~~-----~~~~~l~~~df~~al~~~~ps~s~~ 472 (487)
+..... .....+...||..|+.++.|+..+.
T Consensus 497 ~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 497 IYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred eecccccccccchhhhhhhHhhhhhhhccCCCCCcc
Confidence 432211 1112378899999999999877653
No 31
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=7.2e-33 Score=297.83 Aligned_cols=241 Identities=38% Similarity=0.639 Sum_probs=209.6
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchh
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~ 288 (487)
.+.++|+||+|++++++.|.+.+.. +..+..|... ...++++||+||||||||++|+++|++.+.+|+.++++++...
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 3568999999999999999988765 4555555544 4667899999999999999999999999999999999999988
Q ss_pred ccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCC---CcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 011393 289 WVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMA---NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE 365 (487)
Q Consensus 289 ~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ 365 (487)
+.|.....++.+|..|+...||||||||+|.++..+.. +.+......+.+||..|++.... ..++||++||.++.
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~--~~ViVIaaTN~~~~ 333 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN--KGVIVIAATNRVDI 333 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC--CCeeEEEecCchHh
Confidence 88888889999999999999999999999999877643 23444567788999999987653 45999999999999
Q ss_pred CCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchh
Q 011393 366 LDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL 443 (487)
Q Consensus 366 ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~ 443 (487)
+|++++| ||+..+.+++|+.++|.+||+.++++..+. ++.++..+|..+.||+++||.++|++|+..+.++.
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~-~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~----- 407 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS-PDVSLELIARRTPGFSGADLANLLNEAAILTARRK----- 407 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc-hhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 9999998 999999999999999999999999885543 57789999999999999999999999998887652
Q ss_pred ccccccCCCCcHHHHHHHHHhh
Q 011393 444 TVKANQLRPLRYEDFQKAMAVI 465 (487)
Q Consensus 444 ~~~~~~~~~l~~~df~~al~~~ 465 (487)
...|+.+||.+|+.++
T Consensus 408 ------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 ------KATITMKEIDTAIDRV 423 (638)
T ss_pred ------CCCcCHHHHHHHHHHH
Confidence 2468999999999876
No 32
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.9e-32 Score=301.98 Aligned_cols=261 Identities=38% Similarity=0.655 Sum_probs=227.2
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhccC-CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchh
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~-~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~ 288 (487)
.+.++|+||+|++.+++.|.+++.+|+.+++++.... .+++++|||||||||||++|+++|++++.+|+.+++.++.+.
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4789999999999999999999999999999988764 678999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCH
Q 011393 289 WVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDD 368 (487)
Q Consensus 289 ~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~ 368 (487)
+.|..+..++.+|..+....|+||||||+|.+++.+.....+...+++.+|+..|+++... ..++||++||.++.+|+
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~--~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR--GRVIVIGATNRPDALDP 329 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC--CCEEEEeecCChhhcCH
Confidence 9999999999999999999999999999999998876655666678899999999987543 45899999999999999
Q ss_pred HHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccc--hh-
Q 011393 369 AVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTN--IL- 443 (487)
Q Consensus 369 al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~--~~- 443 (487)
++++ ||+..+.++.|+.++|.+||+.++....+. .+.+++.++..+.||+++||..+|+.|++.++++.... ..
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-EDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 9998 999999999999999999999888776543 56789999999999999999999999999999876431 10
Q ss_pred ---cc--ccccCCCCcHHHHHHHHHhhCCCCCHHH
Q 011393 444 ---TV--KANQLRPLRYEDFQKAMAVIRPSLNKSK 473 (487)
Q Consensus 444 ---~~--~~~~~~~l~~~df~~al~~~~ps~s~~~ 473 (487)
.. .......++.+||..|++.++|+...+.
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~ 443 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREV 443 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhccccccchh
Confidence 00 0112245889999999999999865443
No 33
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-33 Score=263.34 Aligned_cols=245 Identities=37% Similarity=0.623 Sum_probs=212.2
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCcc
Q 011393 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (487)
Q Consensus 207 ~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l 285 (487)
.+....++|+.+.|+-.+...|++.+.+|+..+.+|.+. .+||.+++||||||||||++|+++|..+++.|+.+..+.+
T Consensus 123 ~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~l 202 (388)
T KOG0651|consen 123 HEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSAL 202 (388)
T ss_pred hcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhh
Confidence 344567899999999999999999999999999999985 6899999999999999999999999999999999999999
Q ss_pred chhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 011393 286 TSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE---NDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 362 (487)
Q Consensus 286 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~ 362 (487)
.++|.|++.+.+++.|..|+.+.|||||+||||.+++.+.... +....+.+-+|+.+|++.... .+|-+|+|||+
T Consensus 203 v~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l--~rVk~ImatNr 280 (388)
T KOG0651|consen 203 VDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL--HRVKTIMATNR 280 (388)
T ss_pred hhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc--ccccEEEecCC
Confidence 9999999999999999999999999999999999998774333 233445556777788877654 45899999999
Q ss_pred CCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhcc
Q 011393 363 PQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 440 (487)
Q Consensus 363 ~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~ 440 (487)
|+.|+++|+| |+++.+.+|+|+...|..|++.+....... .+.+.+.+.+.++||+++|+++.|.+|-+.++++..
T Consensus 281 pdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~-Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~- 358 (388)
T KOG0651|consen 281 PDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFH-GEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER- 358 (388)
T ss_pred ccccchhhcCCccccceeccCCcchhhceeeEeecccccccc-ccccHHHHHHHHhccChHHHhhhcccccccccchhh-
Confidence 9999999999 999999999999999999988776543322 345688899999999999999999999988877632
Q ss_pred chhccccccCCCCcHHHHHHHHHhh
Q 011393 441 NILTVKANQLRPLRYEDFQKAMAVI 465 (487)
Q Consensus 441 ~~~~~~~~~~~~l~~~df~~al~~~ 465 (487)
..+-.+||..++.+.
T Consensus 359 ----------~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 359 ----------DEVLHEDFMKLVRKQ 373 (388)
T ss_pred ----------HHHhHHHHHHHHHHH
Confidence 235678999888764
No 34
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.98 E-value=3.4e-31 Score=287.86 Aligned_cols=244 Identities=37% Similarity=0.603 Sum_probs=211.1
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchh
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~ 288 (487)
.....|+|+.|.+.+++.|.+.+.++. .+..+... ...++++||+||||||||++++++|++++.+|+.++++++...
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~-~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~ 224 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLR-EPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhh-CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence 345789999999999999999887643 33333322 4556889999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 011393 289 WVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMAN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE 365 (487)
Q Consensus 289 ~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ 365 (487)
+.+.....++.+|..++...||||||||+|.++..+..+ ........+++||.+|+++... ..++||+|||+|+.
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~--~~vivIaaTN~p~~ 302 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRPDV 302 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC--CCeeEEEecCChhh
Confidence 999999999999999999999999999999999877542 3344567889999999988654 45999999999999
Q ss_pred CCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchh
Q 011393 366 LDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL 443 (487)
Q Consensus 366 ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~ 443 (487)
||++++| ||++.+.+++|+.++|.+||+.++.+.++. .+.++..+++.|.||+++||.++|++|+..|+++.
T Consensus 303 lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~----- 376 (644)
T PRK10733 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAARGN----- 376 (644)
T ss_pred cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 9999998 999999999999999999999999887654 46788999999999999999999999999998752
Q ss_pred ccccccCCCCcHHHHHHHHHhhCCC
Q 011393 444 TVKANQLRPLRYEDFQKAMAVIRPS 468 (487)
Q Consensus 444 ~~~~~~~~~l~~~df~~al~~~~ps 468 (487)
...|++.||.+|+.++.+.
T Consensus 377 ------~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 377 ------KRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred ------CCcccHHHHHHHHHHHhcc
Confidence 2468999999999877654
No 35
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8e-32 Score=270.34 Aligned_cols=268 Identities=27% Similarity=0.426 Sum_probs=218.8
Q ss_pred CCCCCccc--ccChHHHH-HHHHHHhhccccChhhhhccC-CCCceeEEeCCCCCcHHHHHHHHHHHcCCe-EEEEecCc
Q 011393 210 SPSVKWED--VAGLEKAK-QALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQAT-FFNVSASS 284 (487)
Q Consensus 210 ~~~~~~~d--i~G~~~~k-~~L~~~v~~~~~~~~~~~~~~-~~~~~iLL~GppGtGKT~la~aiA~~~~~~-~~~v~~~~ 284 (487)
.|..+|++ |+|++.-- ...+++.......|+....++ .+-+|||||||||||||++||.|.+.+++. --.|++.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 36778887 78887554 445555555555566666653 667899999999999999999999998753 45588999
Q ss_pred cchhccchhHHHHHHHHHHHHhc--------CCcEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhcCCCCCCCCcE
Q 011393 285 LTSKWVGEGEKLVRTLFMVAISR--------QPCVIFIDEIDSIMSTRMAN--ENDASRRLKSEFLIQFDGVTSNPNDLV 354 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~~--------~p~Il~IDEiD~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v 354 (487)
+.++|+|+++.+++.+|..|... .-.||++||||++|.+|++. ..+..+.+.++||..|||+..- .++
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNI 370 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNI 370 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcE
Confidence 99999999999999999888432 12599999999999998754 4556889999999999999764 459
Q ss_pred EEEEecCCCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhcc---CCCCCChhhHHHHHHHcCCCCHHHHHHHHHH
Q 011393 355 IVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKG---QAFSLPGGDLERLVRETEGYSGSDLQALCEE 429 (487)
Q Consensus 355 ivI~ttn~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~---~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~ 429 (487)
+||+.||+++.||+||+| ||...+++.+||+.-|.+|++.+.++ .+.--++.++++||.+|..|||++|..||+.
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 999999999999999999 99999999999999999999988865 3333377899999999999999999999999
Q ss_pred HHHHhHHhhccch--h--ccccccCCCCcHHHHHHHHHhhCCC--CCHHHHHHHHH
Q 011393 430 AAMMPIRELGTNI--L--TVKANQLRPLRYEDFQKAMAVIRPS--LNKSKWEELEQ 479 (487)
Q Consensus 430 A~~~a~~~~~~~~--~--~~~~~~~~~l~~~df~~al~~~~ps--~s~~~i~~~~~ 479 (487)
|...|+.+.-... . .....+...++++||..|+.+++|. +++++++.+..
T Consensus 451 A~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~ 506 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVM 506 (744)
T ss_pred HHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHh
Confidence 9999988875422 1 1122334569999999999999997 57888887764
No 36
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.97 E-value=7.1e-31 Score=296.08 Aligned_cols=204 Identities=20% Similarity=0.241 Sum_probs=169.1
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhc------------------------------------
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW------------------------------------ 289 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~------------------------------------ 289 (487)
..+++||||+||||||||+||+|+|.+++++|+.++++++...+
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 47789999999999999999999999999999999999987643
Q ss_pred -----cchhH--HHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC-CCCCcEEEEEecC
Q 011393 290 -----VGEGE--KLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS-NPNDLVIVMGATN 361 (487)
Q Consensus 290 -----~g~~~--~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vivI~ttn 361 (487)
++.++ ..++.+|+.|+..+||||||||||.|+... .....+.+|+..|++... .....|+||||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d------s~~ltL~qLLneLDg~~~~~s~~~VIVIAATN 1780 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE------SNYLSLGLLVNSLSRDCERCSTRNILVIASTH 1780 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc------cceehHHHHHHHhccccccCCCCCEEEEEeCC
Confidence 11222 237889999999999999999999997652 112237889999997642 2345699999999
Q ss_pred CCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCC--hhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHh
Q 011393 362 KPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLP--GGDLERLVRETEGYSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 362 ~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~--~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~ 437 (487)
+|+.||||++| ||++.|.++.|+..+|.+++..++...++.+. ..+++.+|..|.||+|+||.+||++|++.|+++
T Consensus 1781 RPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq 1860 (2281)
T CHL00206 1781 IPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQ 1860 (2281)
T ss_pred CcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999 99999999999999999988865544444443 247899999999999999999999999999887
Q ss_pred hccchhccccccCCCCcHHHHHHHHHhhC
Q 011393 438 LGTNILTVKANQLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~~df~~al~~~~ 466 (487)
.. ..|+.+||..|+.+..
T Consensus 1861 ~k-----------s~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1861 KK-----------SIIDTNTIRSALHRQT 1878 (2281)
T ss_pred CC-----------CccCHHHHHHHHHHHH
Confidence 32 3578899999987654
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=5.9e-30 Score=251.80 Aligned_cols=222 Identities=18% Similarity=0.195 Sum_probs=173.2
Q ss_pred CCCcccc-cChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhcc
Q 011393 212 SVKWEDV-AGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWV 290 (487)
Q Consensus 212 ~~~~~di-~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~ 290 (487)
..+|+++ .|..-.+.-+...+....+. .+.....++|.+++||||||||||++|+++|++++++|+.++++++.++|+
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn-~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKN-FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhh-hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 4677887 44444444444333222111 111122478899999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHh-----cCCcEEEechhhhhhccCCCCcchHHHHHH-HHHHHHhcCCC----------CCCCCcE
Q 011393 291 GEGEKLVRTLFMVAIS-----RQPCVIFIDEIDSIMSTRMANENDASRRLK-SEFLIQFDGVT----------SNPNDLV 354 (487)
Q Consensus 291 g~~~~~i~~~f~~a~~-----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~-~~ll~~l~~~~----------~~~~~~v 354 (487)
|++++.++.+|..|.. .+||||||||||.+++.+.........+++ .+|+..||+.. .....+|
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V 269 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRV 269 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCc
Confidence 9999999999999975 479999999999999998755555545554 79999988631 1234569
Q ss_pred EEEEecCCCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCC----CCHHHHHHHHH
Q 011393 355 IVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEG----YSGSDLQALCE 428 (487)
Q Consensus 355 ivI~ttn~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G----~s~~dL~~lv~ 428 (487)
+||+|||+|+.||++|+| ||++.+ ..|+.++|.+|++.++++.++ +..++..|+..+.| |.|+--..+..
T Consensus 270 ~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~f~gq~~Df~GAlrar~yd 345 (413)
T PLN00020 270 PIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV--SREDVVKLVDTFPGQPLDFFGALRARVYD 345 (413)
T ss_pred eEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC--CHHHHHHHHHcCCCCCchhhhHHHHHHHH
Confidence 999999999999999999 999854 689999999999999998654 57999999999987 55665566666
Q ss_pred HHHHHhHHhh
Q 011393 429 EAAMMPIREL 438 (487)
Q Consensus 429 ~A~~~a~~~~ 438 (487)
++...-+.+.
T Consensus 346 ~~v~~~i~~~ 355 (413)
T PLN00020 346 DEVRKWIAEV 355 (413)
T ss_pred HHHHHHHHHh
Confidence 6666555544
No 38
>CHL00181 cbbX CbbX; Provisional
Probab=99.92 E-value=1.7e-23 Score=206.30 Aligned_cols=236 Identities=20% Similarity=0.236 Sum_probs=173.8
Q ss_pred cccccChHHHHHHHHHHhhccccChhhhhc--c--CCCCceeEEeCCCCCcHHHHHHHHHHHc-------CCeEEEEecC
Q 011393 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTG--L--RRPARGLLLFGPPGNGKTMLAKAVASES-------QATFFNVSAS 283 (487)
Q Consensus 215 ~~di~G~~~~k~~L~~~v~~~~~~~~~~~~--~--~~~~~~iLL~GppGtGKT~la~aiA~~~-------~~~~~~v~~~ 283 (487)
+++++|++++|++|.+++.+... +..... . ..++.++||+||||||||++|+++|+.+ ..+++.+++.
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~-~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLI-DRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHH-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 45899999999999998866332 233222 2 2345679999999999999999999874 2368999999
Q ss_pred ccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 011393 284 SLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 363 (487)
Q Consensus 284 ~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~ 363 (487)
++.+.|+|++...+..+++.+ .++||||||+|.|...+. ..+....++..|+..|+... ..++||++++..
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~~----~~~~vI~ag~~~ 171 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQR----DDLVVIFAGYKD 171 (287)
T ss_pred HHHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcCC----CCEEEEEeCCcH
Confidence 999999998887778888776 357999999999975432 23345677888888887432 347777776532
Q ss_pred -----CCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHH------cCCC-CHHHHHHHHHHHH
Q 011393 364 -----QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRE------TEGY-SGSDLQALCEEAA 431 (487)
Q Consensus 364 -----~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~------t~G~-s~~dL~~lv~~A~ 431 (487)
..++|++++||...+.|+.++.+++.+|+..++.+.+..+++.....+... ...| ++++++++++.|+
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 134799999999999999999999999999999988888887766655553 1233 4899999999998
Q ss_pred HHhHHhhccch-hccccccCCCCcHHHHHH
Q 011393 432 MMPIRELGTNI-LTVKANQLRPLRYEDFQK 460 (487)
Q Consensus 432 ~~a~~~~~~~~-~~~~~~~~~~l~~~df~~ 460 (487)
..-..++.... ......+...|+.+||.+
T Consensus 252 ~~~~~r~~~~~~~~~~~~~l~~~~~~d~~~ 281 (287)
T CHL00181 252 MRQANRIFESGGRVLTKADLVTIEAEDILK 281 (287)
T ss_pred HHHHHHHHcCCCCCCCHHHHhCCCHHHHhH
Confidence 87777664421 111223345566666643
No 39
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.91 E-value=1.8e-23 Score=204.41 Aligned_cols=214 Identities=17% Similarity=0.222 Sum_probs=163.7
Q ss_pred cccccChHHHHHHHHHHhhccccChhhhhc-c--CCCCceeEEeCCCCCcHHHHHHHHHHHc-------CCeEEEEecCc
Q 011393 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTG-L--RRPARGLLLFGPPGNGKTMLAKAVASES-------QATFFNVSASS 284 (487)
Q Consensus 215 ~~di~G~~~~k~~L~~~v~~~~~~~~~~~~-~--~~~~~~iLL~GppGtGKT~la~aiA~~~-------~~~~~~v~~~~ 284 (487)
+++++|++++|+.|.+++.++......... . .....++||+||||||||++|+++|+++ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 678999999999999998876554332222 2 2334689999999999999999999874 34788999999
Q ss_pred cchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC-
Q 011393 285 LTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP- 363 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~- 363 (487)
+.+.|+|+....++.+|..+. ++||||||+|.|... .+.......+..++..|+... ..+++|+++...
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~---~~~~~~~~~i~~Ll~~~e~~~----~~~~vila~~~~~ 154 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG---GEKDFGKEAIDTLVKGMEDNR----NEFVLILAGYSDE 154 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC---CccchHHHHHHHHHHHHhccC----CCEEEEecCCcch
Confidence 999999999999999988763 579999999999632 122234566778888887542 335555554322
Q ss_pred ----CCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHc---------CCCCHHHHHHHHHHH
Q 011393 364 ----QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRET---------EGYSGSDLQALCEEA 430 (487)
Q Consensus 364 ----~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t---------~G~s~~dL~~lv~~A 430 (487)
..+++++++||...+.|+.++.+++.+|++.++...+..++++.+..|+... ...+++.+.++++.|
T Consensus 155 ~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a 234 (261)
T TIGR02881 155 MDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKA 234 (261)
T ss_pred hHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 2368999999988899999999999999999999888888888888775542 123678888998888
Q ss_pred HHHhHHhh
Q 011393 431 AMMPIREL 438 (487)
Q Consensus 431 ~~~a~~~~ 438 (487)
......++
T Consensus 235 ~~~~~~r~ 242 (261)
T TIGR02881 235 IRRQAVRL 242 (261)
T ss_pred HHHHHHHH
Confidence 77665554
No 40
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.91 E-value=2.6e-23 Score=205.10 Aligned_cols=235 Identities=19% Similarity=0.246 Sum_probs=177.3
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhcc----CCCCceeEEeCCCCCcHHHHHHHHHHHcC-------CeEEEEecCcc
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGL----RRPARGLLLFGPPGNGKTMLAKAVASESQ-------ATFFNVSASSL 285 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~----~~~~~~iLL~GppGtGKT~la~aiA~~~~-------~~~~~v~~~~l 285 (487)
+++|++++|+.|.+++.+.. .+..+... ..+..++||+||||||||++|+++|..+. .+|+.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~-~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLL-VERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHHHH-HHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 68999999999999887633 33333322 23556899999999999999999988752 37999999999
Q ss_pred chhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC--
Q 011393 286 TSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP-- 363 (487)
Q Consensus 286 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~-- 363 (487)
.+.+.|.+...++.+|+.+ .++||||||+|.|.+.+. .......++..|+..|+.. ...++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~~ 172 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQ----RDDLVVILAGYKDRM 172 (284)
T ss_pred hHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHH
Confidence 8899998888888888876 347999999999965432 2334567778888888743 2347777776532
Q ss_pred C---CCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHH-------cCCCCHHHHHHHHHHHHHH
Q 011393 364 Q---ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRE-------TEGYSGSDLQALCEEAAMM 433 (487)
Q Consensus 364 ~---~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~-------t~G~s~~dL~~lv~~A~~~ 433 (487)
+ .+++++++||...|.||.++.+++..|+..++.+.+..+++..+..+..+ .+-.++++++++++.++..
T Consensus 173 ~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 173 DSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 2 34899999999999999999999999999999988888888888887766 4445799999999999887
Q ss_pred hHHhhccch-hccccccCCCCcHHHHHHH
Q 011393 434 PIRELGTNI-LTVKANQLRPLRYEDFQKA 461 (487)
Q Consensus 434 a~~~~~~~~-~~~~~~~~~~l~~~df~~a 461 (487)
-..++.... ......+...|+.+|+..+
T Consensus 253 ~~~r~~~~~~~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 253 QANRLFCDLDRVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHhcCcCCCCCHHHHhCCCHHHHhhc
Confidence 777664421 1122334455677776543
No 41
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.89 E-value=1e-22 Score=188.87 Aligned_cols=195 Identities=19% Similarity=0.287 Sum_probs=135.4
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchh
Q 011393 209 RSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (487)
Q Consensus 209 ~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~ 288 (487)
+.+|.+|+|++|+++++..+.-++..... ...+..++|||||||+|||+||+.+|++++.+|..+++..+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~-------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k- 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKK-------RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK- 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHC-------TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHh-------cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-
Confidence 45789999999999999998776643221 1234568999999999999999999999999999988765421
Q ss_pred ccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC-----C-CC--------CCcE
Q 011393 289 WVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT-----S-NP--------NDLV 354 (487)
Q Consensus 289 ~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~-~~--------~~~v 354 (487)
...+..++... ....||||||||.| ....+..|+..|+... . .+ -.++
T Consensus 89 -----~~dl~~il~~l--~~~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 89 -----AGDLAAILTNL--KEGDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp -----CHHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred -----HHHHHHHHHhc--CCCcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 12223333332 34579999999998 4455666777776421 0 10 1357
Q ss_pred EEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 011393 355 IVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEA 430 (487)
Q Consensus 355 ivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A 430 (487)
.+|+||++...|..++++||.....+..++.++...|++......++.++++....+|.++.| +++-...+++++
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 899999999999999999999888899999999999999999999999999999999999998 787777776654
No 42
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=4.5e-21 Score=197.83 Aligned_cols=193 Identities=19% Similarity=0.239 Sum_probs=151.3
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe--------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------- 276 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------- 276 (487)
.|.++|+|.+|+||+|++.+++.|..++. ..+.++.+||+||||||||++|+++|+.+++.
T Consensus 7 ~L~~KyRP~~f~dvVGQe~iv~~L~~~i~-----------~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC 75 (484)
T PRK14956 7 VLSRKYRPQFFRDVIHQDLAIGALQNALK-----------SGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC 75 (484)
T ss_pred hhHHHhCCCCHHHHhChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcccc
Confidence 46788999999999999999999998885 22334569999999999999999999998763
Q ss_pred ----------------EEEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 277 ----------------FFNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 277 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
|+.+++..- .+-..++.+.+.+. .....|+||||+|.| ....+
T Consensus 76 g~C~sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-----------s~~A~ 138 (484)
T PRK14956 76 NECTSCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-----------TDQSF 138 (484)
T ss_pred CCCcHHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-----------CHHHH
Confidence 333333211 11233444444332 334569999999998 34567
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.||..|+. +..++++|.+|+.++.|.+++++||. ++.|..++.++....++..+...++.++++.+..|++.++
T Consensus 139 NALLKtLEE----Pp~~viFILaTte~~kI~~TI~SRCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~ 213 (484)
T PRK14956 139 NALLKTLEE----PPAHIVFILATTEFHKIPETILSRCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGD 213 (484)
T ss_pred HHHHHHhhc----CCCceEEEeecCChhhccHHHHhhhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 888888863 45568888889889999999999997 6888888888888999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAA 431 (487)
Q Consensus 417 G~s~~dL~~lv~~A~ 431 (487)
| +.++.-.+++.++
T Consensus 214 G-d~RdAL~lLeq~i 227 (484)
T PRK14956 214 G-SVRDMLSFMEQAI 227 (484)
T ss_pred C-hHHHHHHHHHHHH
Confidence 8 5777777777654
No 43
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.7e-21 Score=188.00 Aligned_cols=215 Identities=26% Similarity=0.396 Sum_probs=163.2
Q ss_pred CCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhcc
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWV 290 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~ 290 (487)
+.-.|++|+-.......|..+.+.-.. .. ....|.++||||||||||||+.|+-+|...|..+-.+.+.++..- -
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaN-TK---~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATAN-TK---KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhcc-cc---cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 445699999999999888887653211 11 123567899999999999999999999999999988888776432 2
Q ss_pred chhHHHHHHHHHHHHhc-CCcEEEechhhhhhccCCC-CcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCH
Q 011393 291 GEGEKLVRTLFMVAISR-QPCVIFIDEIDSIMSTRMA-NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDD 368 (487)
Q Consensus 291 g~~~~~i~~~f~~a~~~-~p~Il~IDEiD~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~ 368 (487)
.+.-..++.+|+-+... ..-+|||||+|.++..|.. ...+..+..++.||-.-- .....++++.+||+|.++|.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG----dqSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----DQSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc----ccccceEEEeccCCccchhH
Confidence 23456788999988654 4458899999999988764 345556666777764322 22344788889999999999
Q ss_pred HHHcccccEEEccCCCHHHHHHHHHHHhccCC----------------------CCC----ChhhHHHHHHHcCCCCHHH
Q 011393 369 AVLRRLVKRIYVPLPDENVRRLLLKHKLKGQA----------------------FSL----PGGDLERLVRETEGYSGSD 422 (487)
Q Consensus 369 al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~----------------------~~l----~~~~l~~La~~t~G~s~~d 422 (487)
++-+|++..++||+|..++|..|+..|+.++- +.+ .+..+.+.|..|+||||++
T Consensus 501 AV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGRE 580 (630)
T KOG0742|consen 501 AVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGRE 580 (630)
T ss_pred HHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHH
Confidence 99999999999999999999999998885421 111 2345678899999999999
Q ss_pred HHHHHHHHHHHh
Q 011393 423 LQALCEEAAMMP 434 (487)
Q Consensus 423 L~~lv~~A~~~a 434 (487)
|..|+.-....+
T Consensus 581 iakLva~vQAav 592 (630)
T KOG0742|consen 581 IAKLVASVQAAV 592 (630)
T ss_pred HHHHHHHHHHHH
Confidence 999986543333
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.87 E-value=6.2e-21 Score=188.25 Aligned_cols=215 Identities=27% Similarity=0.377 Sum_probs=154.1
Q ss_pred cccCCCCCCcccccChHHHH---HHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEec
Q 011393 206 IVDRSPSVKWEDVAGLEKAK---QALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k---~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~ 282 (487)
+..+.+|.+++|++|+++.. ..|.+++. .....+++||||||||||+||+.||...+..|..+++
T Consensus 14 LA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA 81 (436)
T COG2256 14 LAERLRPKSLDEVVGQEHLLGEGKPLRRAVE------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA 81 (436)
T ss_pred hHHHhCCCCHHHhcChHhhhCCCchHHHHHh------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc
Confidence 34455799999999999876 34555553 1234689999999999999999999999999999997
Q ss_pred CccchhccchhHHHHHHHHHHHHhc----CCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 011393 283 SSLTSKWVGEGEKLVRTLFMVAISR----QPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMG 358 (487)
Q Consensus 283 ~~l~~~~~g~~~~~i~~~f~~a~~~----~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ 358 (487)
... +-+.++.+++.|+.. ...||||||||.| .+..+..||-.++ ++.|++||
T Consensus 82 v~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----------nK~QQD~lLp~vE------~G~iilIG 137 (436)
T COG2256 82 VTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----------NKAQQDALLPHVE------NGTIILIG 137 (436)
T ss_pred ccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----------Chhhhhhhhhhhc------CCeEEEEe
Confidence 443 456788888888543 3589999999999 3344566777666 34478887
Q ss_pred ec--CCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhc--cCCCC-----CChhhHHHHHHHcCCCCHHHHHHHHHH
Q 011393 359 AT--NKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK--GQAFS-----LPGGDLERLVRETEGYSGSDLQALCEE 429 (487)
Q Consensus 359 tt--n~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~--~~~~~-----l~~~~l~~La~~t~G~s~~dL~~lv~~ 429 (487)
+| |+...|.++|++|+. ++.+...+.++...++.+.+. ..++. ++++.++.|+..+.|...+.|. +++.
T Consensus 138 ATTENPsF~ln~ALlSR~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN-~LE~ 215 (436)
T COG2256 138 ATTENPSFELNPALLSRAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALN-LLEL 215 (436)
T ss_pred ccCCCCCeeecHHHhhhhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHH-HHHH
Confidence 66 666899999999998 688888899999888888443 33443 6788999999999886444443 3344
Q ss_pred HHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhCCCCCH
Q 011393 430 AAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNK 471 (487)
Q Consensus 430 A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ps~s~ 471 (487)
++..+-. ...++.+++.+.+.+..+...+
T Consensus 216 ~~~~~~~-------------~~~~~~~~l~~~l~~~~~~~Dk 244 (436)
T COG2256 216 AALSAEP-------------DEVLILELLEEILQRRSARFDK 244 (436)
T ss_pred HHHhcCC-------------CcccCHHHHHHHHhhhhhccCC
Confidence 4333200 0123466666666665554444
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.87 E-value=3.3e-20 Score=187.44 Aligned_cols=240 Identities=18% Similarity=0.196 Sum_probs=170.3
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccc
Q 011393 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (487)
Q Consensus 207 ~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~ 286 (487)
..+++|.+|++++|+++.++.|..++..... ...++.++|||||||||||++|+++|++++..+..+++..+.
T Consensus 16 ~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~ 88 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAKK-------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE 88 (328)
T ss_pred hhhcCcCCHHHhcCcHHHHHHHHHHHHHHHh-------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc
Confidence 4567889999999999999999888753211 134567899999999999999999999999988777665432
Q ss_pred hhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC-----CC---------CCC
Q 011393 287 SKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT-----SN---------PND 352 (487)
Q Consensus 287 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~---------~~~ 352 (487)
. ...+..++... ..++||||||||.+... ....+...|+... .. ...
T Consensus 89 ~------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-----------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 89 K------PGDLAAILTNL--EEGDVLFIDEIHRLSPV-----------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred C------hHHHHHHHHhc--ccCCEEEEecHhhcchH-----------HHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 1 12233333322 45789999999998321 1122233332211 00 012
Q ss_pred cEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 011393 353 LVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAM 432 (487)
Q Consensus 353 ~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~ 432 (487)
++.+|++|+.+..+++++++||...+.++.|+.+++.++++..+...++.++++.+..|+..+.| +++.+..+++.+..
T Consensus 150 ~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~ 228 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRD 228 (328)
T ss_pred CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHH
Confidence 36788999999999999999998889999999999999999999999999999999999999998 56788888887665
Q ss_pred HhHHhhccchhccccccCCCCcHHHHHHHHHhhCCC---CCHHHHHHHHHHHHHh
Q 011393 433 MPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPS---LNKSKWEELEQWNREF 484 (487)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ps---~s~~~i~~~~~w~~~~ 484 (487)
.+..+ ....|+.+++..++..+... ++..+.+-+..+.+.|
T Consensus 229 ~a~~~-----------~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~ 272 (328)
T PRK00080 229 FAQVK-----------GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKF 272 (328)
T ss_pred HHHHc-----------CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHc
Confidence 55432 11346777777777665443 2333333333354443
No 46
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.87 E-value=2.7e-21 Score=206.22 Aligned_cols=193 Identities=22% Similarity=0.268 Sum_probs=151.5
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe---------
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--------- 276 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~--------- 276 (487)
+.+||++.+|++|+|++.+++.|..++. .++.++.+||+||+|||||++++++|+.+++.
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 5678999999999999999999999884 33445678999999999999999999998652
Q ss_pred ---------------EEEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHHH
Q 011393 277 ---------------FFNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLKS 337 (487)
Q Consensus 277 ---------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~ 337 (487)
+++++..+- .+-..++.+++.+. .....||||||+|.| .....+
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-----------T~~A~N 137 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHML-----------TNHAFN 137 (830)
T ss_pred ccHHHHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhC-----------CHHHHH
Confidence 333333211 11234555555443 234469999999998 234567
Q ss_pred HHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCC
Q 011393 338 EFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEG 417 (487)
Q Consensus 338 ~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G 417 (487)
.||+.|+. +..+++||.+||.++.|.+.|++||. .+.|..++.++...+|+.++..+++.++++.+..|++.+.|
T Consensus 138 ALLKtLEE----PP~~v~FILaTtd~~KIp~TIrSRCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G 212 (830)
T PRK07003 138 AMLKTLEE----PPPHVKFILATTDPQKIPVTVLSRCL-QFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG 212 (830)
T ss_pred HHHHHHHh----cCCCeEEEEEECChhhccchhhhheE-EEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88888874 34458888899999999999999997 69999999999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHH
Q 011393 418 YSGSDLQALCEEAAM 432 (487)
Q Consensus 418 ~s~~dL~~lv~~A~~ 432 (487)
+.++..+++..+..
T Consensus 213 -smRdALsLLdQAia 226 (830)
T PRK07003 213 -SMRDALSLTDQAIA 226 (830)
T ss_pred -CHHHHHHHHHHHHH
Confidence 56666667666553
No 47
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=1.9e-21 Score=205.05 Aligned_cols=194 Identities=21% Similarity=0.270 Sum_probs=152.7
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC---------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA--------- 275 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~--------- 275 (487)
.|.+||++.+|+||+|++.+++.|.+++. ..+.++.+||+||+|||||++|+.+|+.+++
T Consensus 5 vLarKYRPqtFddVIGQe~vv~~L~~al~-----------~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~ 73 (700)
T PRK12323 5 VLARKWRPRDFTTLVGQEHVVRALTHALE-----------QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI 73 (700)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHH-----------hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC
Confidence 35678999999999999999999999885 3344567899999999999999999999876
Q ss_pred --------------------eEEEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchH
Q 011393 276 --------------------TFFNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDA 331 (487)
Q Consensus 276 --------------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~ 331 (487)
.+++++...- .+-..++.+++... .....|+||||+|.|
T Consensus 74 ~~~PCG~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~L----------- 136 (700)
T PRK12323 74 TAQPCGQCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML----------- 136 (700)
T ss_pred CCCCCcccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-----------
Confidence 2233333211 11233455554432 334579999999998
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHH
Q 011393 332 SRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERL 411 (487)
Q Consensus 332 ~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~L 411 (487)
.....+.||+.|+. +..++++|.+|+.++.|.+.|++||. .+.|..++.++..+.++.++...++.++++.++.|
T Consensus 137 s~~AaNALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRCq-~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~I 211 (700)
T PRK12323 137 TNHAFNAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRCL-QFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLL 211 (700)
T ss_pred CHHHHHHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHHH-hcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34567888988874 45568888889999999999999997 69999999999999999999888888888899999
Q ss_pred HHHcCCCCHHHHHHHHHHHHH
Q 011393 412 VRETEGYSGSDLQALCEEAAM 432 (487)
Q Consensus 412 a~~t~G~s~~dL~~lv~~A~~ 432 (487)
++.+.| +.++..+++..+..
T Consensus 212 A~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 212 AQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 999887 77788888776554
No 48
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.2e-21 Score=187.35 Aligned_cols=236 Identities=26% Similarity=0.345 Sum_probs=175.8
Q ss_pred CcccccChHHHHHHHHHHhhccccChhhhh--ccCCCCceeEEeCCCCCcHHHHHHHHHHHcC---------CeEEEEec
Q 011393 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFT--GLRRPARGLLLFGPPGNGKTMLAKAVASESQ---------ATFFNVSA 282 (487)
Q Consensus 214 ~~~di~G~~~~k~~L~~~v~~~~~~~~~~~--~~~~~~~~iLL~GppGtGKT~la~aiA~~~~---------~~~~~v~~ 282 (487)
-|+.++--..+|+.|..++...+...+... .+..-.+-|||+||||||||+|++++|+.+. ..++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 488888888999999998876554433211 1223346799999999999999999999863 46789999
Q ss_pred CccchhccchhHHHHHHHHHHHHh---cCCc--EEEechhhhhhccCC----CCcchHHHHHHHHHHHHhcCCCCCCCCc
Q 011393 283 SSLTSKWVGEGEKLVRTLFMVAIS---RQPC--VIFIDEIDSIMSTRM----ANENDASRRLKSEFLIQFDGVTSNPNDL 353 (487)
Q Consensus 283 ~~l~~~~~g~~~~~i~~~f~~a~~---~~p~--Il~IDEiD~l~~~~~----~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 353 (487)
..+.++|++++.+.+..+|..... ...+ .++|||+++|+..|. .++....-|+.+.+|.+||.+...+ +
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~--N 297 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYP--N 297 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCC--C
Confidence 999999999999999999976643 2333 466999999987763 2344456789999999999987654 4
Q ss_pred EEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc---CCCCC--------------ChhhHHHHHHH-c
Q 011393 354 VIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG---QAFSL--------------PGGDLERLVRE-T 415 (487)
Q Consensus 354 vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~---~~~~l--------------~~~~l~~La~~-t 415 (487)
|++++|+|-.+.||.|+.+|-+-..++..|+...+.+|++..+.. .|+-+ .+.....+... +
T Consensus 298 vliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 298 VLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 999999999999999999999999999999999999999987652 12111 12223334444 4
Q ss_pred CCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHh
Q 011393 416 EGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAV 464 (487)
Q Consensus 416 ~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~ 464 (487)
.|.||+-|+.|=-.|...-. +..+++.++|..|+..
T Consensus 378 ~gLSGRtlrkLP~Laha~y~-------------~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 378 VGLSGRTLRKLPLLAHAEYF-------------RTFTVDLSNFLLALLE 413 (423)
T ss_pred cCCccchHhhhhHHHHHhcc-------------CCCccChHHHHHHHHH
Confidence 78898888776443322211 1246888898887753
No 49
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=2.3e-21 Score=168.88 Aligned_cols=130 Identities=39% Similarity=0.676 Sum_probs=117.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccchhHHHHHHHHHHHHhcC-CcEEEechhhhhhccCCCCcch
Q 011393 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQ-PCVIFIDEIDSIMSTRMANEND 330 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~-p~Il~IDEiD~l~~~~~~~~~~ 330 (487)
|||+||||||||++|+.+|+.++.+++.+++.++.+.+.+.....+..+|..+.... |+||||||+|.+++........
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998899999999999999998887 9999999999999887545666
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHH-cccccEEEccC
Q 011393 331 ASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVL-RRLVKRIYVPL 382 (487)
Q Consensus 331 ~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~-~Rf~~~i~i~~ 382 (487)
....+...|+..++..... ..+++||++||.++.++++++ +||+.++++++
T Consensus 81 ~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 6788889999999887643 356999999999999999999 99999998874
No 50
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=8e-21 Score=198.97 Aligned_cols=229 Identities=25% Similarity=0.335 Sum_probs=181.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE 328 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~ 328 (487)
...+||+|+||||||++++++|+++|.+++.++|.++.+...+..+..+..+|..|+...|+|||+-++|.|...+.+++
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgge 510 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGE 510 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCch
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999986554422
Q ss_pred chHHHHHHHHHHHHhc-CCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhh
Q 011393 329 NDASRRLKSEFLIQFD-GVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGD 407 (487)
Q Consensus 329 ~~~~~~~~~~ll~~l~-~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~ 407 (487)
..+++..+-..+. .....+..+++||++|+..+.+++.+++-|..+|.++.|+.++|.+||+.++....+. .+..
T Consensus 511 ---d~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n-~~v~ 586 (953)
T KOG0736|consen 511 ---DARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN-QDVN 586 (953)
T ss_pred ---hHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc-hHHH
Confidence 3333333333332 2222345669999999999999999999999999999999999999999999987766 6788
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchh----c-----cccccCCCCcHHHHHHHHHhhC------------
Q 011393 408 LERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL----T-----VKANQLRPLRYEDFQKAMAVIR------------ 466 (487)
Q Consensus 408 l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~----~-----~~~~~~~~l~~~df~~al~~~~------------ 466 (487)
+..++.+|.||+.+||.+++..+-..+..++..... . ........++.+||.+++.+++
T Consensus 587 ~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKI 666 (953)
T KOG0736|consen 587 LKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKI 666 (953)
T ss_pred HHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCC
Confidence 999999999999999999998874444433322110 0 0111225689999999998665
Q ss_pred CCCCHHHHHHHHHHH
Q 011393 467 PSLNKSKWEELEQWN 481 (487)
Q Consensus 467 ps~s~~~i~~~~~w~ 481 (487)
|.|+++++-.+++-.
T Consensus 667 PnV~WdDVGGLeevK 681 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVK 681 (953)
T ss_pred CccchhcccCHHHHH
Confidence 566777766665543
No 51
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1e-20 Score=196.51 Aligned_cols=236 Identities=24% Similarity=0.281 Sum_probs=187.3
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEecCccchhccc
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSASSLTSKWVG 291 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~~~l~~~~~g 291 (487)
.|++-...+|+..-+....| .....+|||+||+|+|||.|+++++++. -+++..++|+.+......
T Consensus 408 ~d~i~~~s~kke~~n~~~sp----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhhhhccc----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 55666666666666544443 2224589999999999999999999985 467889999999888888
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEechhhhhhccCC--CCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHH
Q 011393 292 EGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRM--ANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDA 369 (487)
Q Consensus 292 ~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~a 369 (487)
...+.+..+|..+.+++|+||++|++|.|++... +++.+.....+..++.++-......+..+.||++.+....+++.
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~ 557 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL 557 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh
Confidence 8889999999999999999999999999998332 23333344455566655543333445558899999999999999
Q ss_pred HHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhcccc
Q 011393 370 VLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKA 447 (487)
Q Consensus 370 l~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~ 447 (487)
+.+ +|+.++.++.|+..+|.+||+..+++........+++-++..|+||...||..++++|...|+.+...
T Consensus 558 L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris------- 630 (952)
T KOG0735|consen 558 LVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS------- 630 (952)
T ss_pred hcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc-------
Confidence 887 89999999999999999999999988665556677888999999999999999999999999844221
Q ss_pred ccCCCCcHHHHHHHHHhhCCC
Q 011393 448 NQLRPLRYEDFQKAMAVIRPS 468 (487)
Q Consensus 448 ~~~~~l~~~df~~al~~~~ps 468 (487)
....-+|.++|.++|+.+.|.
T Consensus 631 ~~~klltke~f~ksL~~F~P~ 651 (952)
T KOG0735|consen 631 NGPKLLTKELFEKSLKDFVPL 651 (952)
T ss_pred cCcccchHHHHHHHHHhcChH
Confidence 111258999999999988884
No 52
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=2.1e-20 Score=195.57 Aligned_cols=193 Identities=17% Similarity=0.241 Sum_probs=146.3
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC---------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA--------- 275 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~--------- 275 (487)
.|.++++|.+|+|++|++++++.|...+. ....++++|||||||||||++|+++|+.+++
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~-----------~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc 71 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALK-----------KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPC 71 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCC
Confidence 46678999999999999999999988774 2234567999999999999999999999765
Q ss_pred ---------------eEEEEecCccchhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 276 ---------------TFFNVSASSLTSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 276 ---------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
.++.++++.-. +-..++.+.+.+.. ....||||||+|.|. ...+
T Consensus 72 ~~c~~c~~i~~g~~~dv~el~aa~~~------gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-----------~~a~ 134 (472)
T PRK14962 72 NECRACRSIDEGTFMDVIELDAASNR------GIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-----------KEAF 134 (472)
T ss_pred cccHHHHHHhcCCCCccEEEeCcccC------CHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----------HHHH
Confidence 35555543211 12334455444432 234699999999982 3445
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.|+..++. ++..+++|++|+.+..+++++++||. .+.|..++.++...+++..+...++.++++.++.|+..+.
T Consensus 135 ~~LLk~LE~----p~~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 135 NALLKTLEE----PPSHVVFVLATTNLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS 209 (472)
T ss_pred HHHHHHHHh----CCCcEEEEEEeCChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 677777764 33457777777778899999999997 7999999999999999999988899999999999999987
Q ss_pred CCCHHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAA 431 (487)
Q Consensus 417 G~s~~dL~~lv~~A~ 431 (487)
| +.+.+-+.++.++
T Consensus 210 G-dlR~aln~Le~l~ 223 (472)
T PRK14962 210 G-GLRDALTMLEQVW 223 (472)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 4555555555433
No 53
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=2.5e-20 Score=197.10 Aligned_cols=194 Identities=20% Similarity=0.234 Sum_probs=152.4
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC---------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA--------- 275 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~--------- 275 (487)
.+.++|+|.+|++|+|++.+++.|..++. ..+.++.+||+||||||||++|+++|+.+++
T Consensus 4 ~LarKyRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pC 72 (702)
T PRK14960 4 VLARKYRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPC 72 (702)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCC
Confidence 35678999999999999999999999884 3344578899999999999999999999876
Q ss_pred ---------------eEEEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 276 ---------------TFFNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 276 ---------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
.++.+++++- ..-..++.+...+. .....|+||||+|.| .....
T Consensus 73 g~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-----------S~~A~ 135 (702)
T PRK14960 73 EVCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-----------STHSF 135 (702)
T ss_pred ccCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-----------CHHHH
Confidence 3344444321 12234555554432 234569999999998 23456
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.|+..|+. +...+.+|.+|+.+..+.+.+++||. ++.|..++.++....++..+.+.++.+++..+..|++.+.
T Consensus 136 NALLKtLEE----PP~~v~FILaTtd~~kIp~TIlSRCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~ 210 (702)
T PRK14960 136 NALLKTLEE----PPEHVKFLFATTDPQKLPITVISRCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQ 210 (702)
T ss_pred HHHHHHHhc----CCCCcEEEEEECChHhhhHHHHHhhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 778888874 33456777788888999999999997 6999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAAM 432 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~ 432 (487)
| +.+++.+++..++.
T Consensus 211 G-dLRdALnLLDQaIa 225 (702)
T PRK14960 211 G-SLRDALSLTDQAIA 225 (702)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 7 77888888776653
No 54
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.85 E-value=5.6e-20 Score=203.68 Aligned_cols=251 Identities=21% Similarity=0.290 Sum_probs=183.6
Q ss_pred HhhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-------
Q 011393 201 MINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES------- 273 (487)
Q Consensus 201 ~~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~------- 273 (487)
.....+.++.++-.+++++|.++.+..+.+.+. ++...++||+||||||||++|+++|.++
T Consensus 167 ~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~ 234 (731)
T TIGR02639 167 KYTVDLTEKAKNGKIDPLIGREDELERTIQVLC------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPE 234 (731)
T ss_pred HHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHh------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCch
Confidence 344566666778899999999999998877663 2234689999999999999999999986
Q ss_pred ---CCeEEEEecCccc--hhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC
Q 011393 274 ---QATFFNVSASSLT--SKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS 348 (487)
Q Consensus 274 ---~~~~~~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 348 (487)
+..++.++++.+. .+|.|+.+..++.+|+.+....++||||||+|.|++........ ..+.+.|...+.
T Consensus 235 ~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~---- 308 (731)
T TIGR02639 235 NLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--MDASNLLKPALS---- 308 (731)
T ss_pred hhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHHh----
Confidence 7889999988887 57899999999999999987789999999999998764322211 122233444443
Q ss_pred CCCCcEEEEEecCCC-----CCCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc----CCCCCChhhHHHHHHHcCCCC
Q 011393 349 NPNDLVIVMGATNKP-----QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----QAFSLPGGDLERLVRETEGYS 419 (487)
Q Consensus 349 ~~~~~vivI~ttn~~-----~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~----~~~~l~~~~l~~La~~t~G~s 419 (487)
.+.+.+|++|+.. ..+|+++.|||. .|.++.|+.+++.+|++..... +++.++++.+..++..+..|-
T Consensus 309 --~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 309 --SGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred --CCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 2448899998863 467999999998 6999999999999999976543 567789999999999988775
Q ss_pred HH-----HHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhCC----CCCHHHHHHHHH
Q 011393 420 GS-----DLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRP----SLNKSKWEELEQ 479 (487)
Q Consensus 420 ~~-----dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~p----s~s~~~i~~~~~ 479 (487)
+. ---.++++|+... ++.. .......++.+|+.+++..... .++.++...+..
T Consensus 386 ~~r~~P~kai~lld~a~a~~--~~~~-----~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~ 447 (731)
T TIGR02639 386 NDRFLPDKAIDVIDEAGASF--RLRP-----KAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKN 447 (731)
T ss_pred ccccCCHHHHHHHHHhhhhh--hcCc-----ccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHH
Confidence 43 2245566655322 1110 0011245899999999887642 234455555544
No 55
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=8e-20 Score=198.46 Aligned_cols=193 Identities=24% Similarity=0.289 Sum_probs=150.8
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeE-------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATF------- 277 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~------- 277 (487)
.+.++|+|.+|++|+|++.+++.|+.++. ..+.++.+||+||||||||++|+++|+.+++..
T Consensus 5 ~LaeKyRP~tFddIIGQe~Iv~~LknaI~-----------~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pC 73 (944)
T PRK14949 5 VLARKWRPATFEQMVGQSHVLHALTNALT-----------QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPC 73 (944)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCC
Confidence 35678999999999999999999998884 223455679999999999999999999987641
Q ss_pred -----------------EEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 278 -----------------FNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 278 -----------------~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
+.+++.+ ...-..++.+...+. .....|+||||+|.| ....+
T Consensus 74 g~C~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAq 136 (944)
T PRK14949 74 GVCSSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSF 136 (944)
T ss_pred CCchHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHH
Confidence 1121110 011233455544332 234469999999999 45677
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.||..|+. +...+++|++|+.+..|.+.|++||. ++.|..++.++....+++.+...++.++++.+..|+..+.
T Consensus 137 NALLKtLEE----PP~~vrFILaTTe~~kLl~TIlSRCq-~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~ 211 (944)
T PRK14949 137 NALLKTLEE----PPEHVKFLLATTDPQKLPVTVLSRCL-QFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAAN 211 (944)
T ss_pred HHHHHHHhc----cCCCeEEEEECCCchhchHHHHHhhe-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 889998884 44557777788889999999999996 6999999999999999999988888889999999999998
Q ss_pred CCCHHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAA 431 (487)
Q Consensus 417 G~s~~dL~~lv~~A~ 431 (487)
| +.+++..+|..++
T Consensus 212 G-d~R~ALnLLdQal 225 (944)
T PRK14949 212 G-SMRDALSLTDQAI 225 (944)
T ss_pred C-CHHHHHHHHHHHH
Confidence 8 6788888887665
No 56
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.85 E-value=5.3e-20 Score=175.58 Aligned_cols=196 Identities=17% Similarity=0.221 Sum_probs=147.2
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC------eEE
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA------TFF 278 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~------~~~ 278 (487)
.|+++|+|.+|++++|++.+++.|+..+.. +...++|||||||||||+.|+++|+++.+ .+.
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl 92 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL 92 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchh
Confidence 589999999999999999999999999851 33468999999999999999999999865 344
Q ss_pred EEecCccchhccchhHHHHHHHHHHHHh------c---CC-cEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC
Q 011393 279 NVSASSLTSKWVGEGEKLVRTLFMVAIS------R---QP-CVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS 348 (487)
Q Consensus 279 ~v~~~~l~~~~~g~~~~~i~~~f~~a~~------~---~p-~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 348 (487)
+.++++..+..++ ...++. |..... . .| .||+|||+|.| ....+..|...|+...
T Consensus 93 ~lnaSderGisvv--r~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~~s- 157 (346)
T KOG0989|consen 93 ELNASDERGISVV--REKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMEDFS- 157 (346)
T ss_pred hhcccccccccch--hhhhcC-HHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhccc-
Confidence 5566655544321 112222 222211 1 12 59999999999 4567788888888643
Q ss_pred CCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHH
Q 011393 349 NPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCE 428 (487)
Q Consensus 349 ~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~ 428 (487)
..+.+|..||++..|...+.+||.+ +.|+....+.....|+.++.++++.++++.++.++..++|- -++-..+++
T Consensus 158 ---~~trFiLIcnylsrii~pi~SRC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd-LR~Ait~Lq 232 (346)
T KOG0989|consen 158 ---RTTRFILICNYLSRIIRPLVSRCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD-LRRAITTLQ 232 (346)
T ss_pred ---cceEEEEEcCChhhCChHHHhhHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc-HHHHHHHHH
Confidence 3477888899999999999999997 66666666666777799999999999999999999999884 333334444
Q ss_pred HHHH
Q 011393 429 EAAM 432 (487)
Q Consensus 429 ~A~~ 432 (487)
.++.
T Consensus 233 sls~ 236 (346)
T KOG0989|consen 233 SLSL 236 (346)
T ss_pred Hhhc
Confidence 4443
No 57
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=1.8e-20 Score=198.10 Aligned_cols=194 Identities=21% Similarity=0.230 Sum_probs=152.2
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe--------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------- 276 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------- 276 (487)
.|.++|+|.+|+||+|++.+++.|..++. ..+.++.+||+||||||||++|+++|+.+++.
T Consensus 5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~-----------~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC 73 (509)
T PRK14958 5 VLARKWRPRCFQEVIGQAPVVRALSNALD-----------QQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC 73 (509)
T ss_pred hHHHHHCCCCHHHhcCCHHHHHHHHHHHH-----------hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC
Confidence 36788999999999999999999999884 23445678999999999999999999998653
Q ss_pred ----------------EEEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 277 ----------------FFNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 277 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
++++++.+- ..-..++.+.+.+. .....|+||||+|.| .....
T Consensus 74 g~C~~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-----------s~~a~ 136 (509)
T PRK14958 74 NDCENCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-----------SGHSF 136 (509)
T ss_pred CCCHHHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-----------CHHHH
Confidence 445554321 12233555555442 223469999999998 23456
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.|+..|+. +...+++|.+|+.++.+.+.+++||. .+.|..++.++....+...+...++.+++..+..|++.+.
T Consensus 137 naLLk~LEe----pp~~~~fIlattd~~kl~~tI~SRc~-~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~ 211 (509)
T PRK14958 137 NALLKTLEE----PPSHVKFILATTDHHKLPVTVLSRCL-QFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAAN 211 (509)
T ss_pred HHHHHHHhc----cCCCeEEEEEECChHhchHHHHHHhh-hhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 788888874 34457777788888999999999997 5888888898888888999999999999999999999987
Q ss_pred CCCHHHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAAM 432 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~ 432 (487)
| +.+++.++++.++.
T Consensus 212 G-slR~al~lLdq~ia 226 (509)
T PRK14958 212 G-SVRDALSLLDQSIA 226 (509)
T ss_pred C-cHHHHHHHHHHHHh
Confidence 6 78888888887654
No 58
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.85 E-value=1.3e-19 Score=181.30 Aligned_cols=194 Identities=18% Similarity=0.199 Sum_probs=143.1
Q ss_pred CcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccchh
Q 011393 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEG 293 (487)
Q Consensus 214 ~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g~~ 293 (487)
+|++++|++++++.|..++..... ...++.+++||||||||||+||+++|++++..+..+.+..... .
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~--- 69 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM-------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--P--- 69 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--c---
Confidence 699999999999999988843221 1234568999999999999999999999998877666543321 1
Q ss_pred HHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC--------------CCCCcEEEEEe
Q 011393 294 EKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS--------------NPNDLVIVMGA 359 (487)
Q Consensus 294 ~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------------~~~~~vivI~t 359 (487)
..+...+.. ...+.+|||||+|.+.+. ....|+..|+.... ....++.+|++
T Consensus 70 -~~l~~~l~~--~~~~~vl~iDEi~~l~~~-----------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 70 -GDLAAILTN--LEEGDVLFIDEIHRLSPA-----------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred -hhHHHHHHh--cccCCEEEEehHhhhCHH-----------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 112222222 235689999999998432 12223333322110 01123788899
Q ss_pred cCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q 011393 360 TNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 360 tn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a 434 (487)
|+.+..+++++++||...+.++.|+.++..++++..+...++.++++.++.|++.+.|+ ++.+..++..+...+
T Consensus 136 t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~a 209 (305)
T TIGR00635 136 TTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDFA 209 (305)
T ss_pred cCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHHH
Confidence 99999999999999988889999999999999999998888889999999999999885 577778887765444
No 59
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.84 E-value=2.7e-20 Score=198.49 Aligned_cols=222 Identities=20% Similarity=0.334 Sum_probs=162.7
Q ss_pred hhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc--------
Q 011393 202 INTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-------- 273 (487)
Q Consensus 202 ~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-------- 273 (487)
+...|.+++++.+|++++|++..++.|+..+. ...+.++||+||||||||++|+++.+++
T Consensus 51 ~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~ 118 (531)
T TIGR02902 51 LTEPLSEKTRPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPF 118 (531)
T ss_pred hcchHHHhhCcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCc
Confidence 45688999999999999999999999986642 1234689999999999999999998642
Q ss_pred --CCeEEEEecCccc-------hhccchhHHHH----------------HHHHHHHHhcCCcEEEechhhhhhccCCCCc
Q 011393 274 --QATFFNVSASSLT-------SKWVGEGEKLV----------------RTLFMVAISRQPCVIFIDEIDSIMSTRMANE 328 (487)
Q Consensus 274 --~~~~~~v~~~~l~-------~~~~g~~~~~i----------------~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~ 328 (487)
+.+|+.++|.... ....+.....+ ...+. ....++|||||+|.|
T Consensus 119 ~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L-------- 187 (531)
T TIGR02902 119 KEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGEL-------- 187 (531)
T ss_pred CCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhC--------
Confidence 4689999986421 11111000000 00111 224579999999998
Q ss_pred chHHHHHHHHHHHHhcCCC-------------------------CCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCC
Q 011393 329 NDASRRLKSEFLIQFDGVT-------------------------SNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLP 383 (487)
Q Consensus 329 ~~~~~~~~~~ll~~l~~~~-------------------------~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~P 383 (487)
....++.|+..|+... ..+.+..+|++||+.|+.+++++++||. .+.++.+
T Consensus 188 ---~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~-~I~f~pL 263 (531)
T TIGR02902 188 ---HPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCV-EIFFRPL 263 (531)
T ss_pred ---CHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhh-eeeCCCC
Confidence 3345556665553210 0111224555667889999999999997 6889999
Q ss_pred CHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHH
Q 011393 384 DENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMA 463 (487)
Q Consensus 384 d~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~ 463 (487)
+.+++.+|++..+++.++.++++.++.|+..++ +++++.++|+.|+..+..+. ...|+.+|+.+++.
T Consensus 264 ~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~-----------~~~It~~dI~~vl~ 330 (531)
T TIGR02902 264 LDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEG-----------RKRILAEDIEWVAE 330 (531)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCC-----------CcEEcHHHHHHHhC
Confidence 999999999999999999999999999888775 78999999999987775431 13589999999987
No 60
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=2.3e-19 Score=169.52 Aligned_cols=198 Identities=20% Similarity=0.237 Sum_probs=151.9
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhc
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW 289 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~ 289 (487)
.+|..|+|.+|++.+|+.|.-++.....+ ....-|+|||||||.||||||+.+|+++|..+...++..+..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 46889999999999999999888644333 234579999999999999999999999999998887766532
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCC--------CC------CCCCcEE
Q 011393 290 VGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGV--------TS------NPNDLVI 355 (487)
Q Consensus 290 ~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~--------~~------~~~~~vi 355 (487)
...+-.++.. -....||||||||.|.+. +-+-|.-.|+.+ .. -.-.++.
T Consensus 91 ----~gDlaaiLt~--Le~~DVLFIDEIHrl~~~-----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 91 ----PGDLAAILTN--LEEGDVLFIDEIHRLSPA-----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ----hhhHHHHHhc--CCcCCeEEEehhhhcChh-----------HHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 1222233333 234579999999999432 222233334321 10 0113588
Q ss_pred EEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q 011393 356 VMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 356 vI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a 434 (487)
+||+|.+...|..++++||.....+..++.++..+|+.......++.++++....+|+++.| +++--..|+++..-.|
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa 231 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFA 231 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 6776666666655444
No 61
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.84 E-value=5.3e-20 Score=197.17 Aligned_cols=193 Identities=25% Similarity=0.319 Sum_probs=151.4
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe---------
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--------- 276 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~--------- 276 (487)
+.++|+|.+|+||+|++.+++.|...+. .++.++.+||+||+|||||++|+++|+.+++.
T Consensus 6 La~KyRP~~f~divGQe~vv~~L~~~l~-----------~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (647)
T PRK07994 6 LARKWRPQTFAEVVGQEHVLTALANALD-----------LGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCG 74 (647)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCC
Confidence 5678999999999999999999998884 23345668999999999999999999998763
Q ss_pred ---------------EEEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHHH
Q 011393 277 ---------------FFNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLKS 337 (487)
Q Consensus 277 ---------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~ 337 (487)
++.+++..- ..-..++.+...+. .+...|+||||+|.| ....++
T Consensus 75 ~C~~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------s~~a~N 137 (647)
T PRK07994 75 ECDNCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFN 137 (647)
T ss_pred CCHHHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------CHHHHH
Confidence 233333210 11233445444432 234569999999998 356678
Q ss_pred HHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCC
Q 011393 338 EFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEG 417 (487)
Q Consensus 338 ~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G 417 (487)
.||+.|+ .+...+++|.+|+.+..|.+.+++||. .+.|..++.++....+...+...++.+++..+..|+..+.|
T Consensus 138 ALLKtLE----EPp~~v~FIL~Tt~~~kLl~TI~SRC~-~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G 212 (647)
T PRK07994 138 ALLKTLE----EPPEHVKFLLATTDPQKLPVTILSRCL-QFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG 212 (647)
T ss_pred HHHHHHH----cCCCCeEEEEecCCccccchHHHhhhe-EeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8999888 345567888888889999999999986 79999999999999999999888888899999999999988
Q ss_pred CCHHHHHHHHHHHHH
Q 011393 418 YSGSDLQALCEEAAM 432 (487)
Q Consensus 418 ~s~~dL~~lv~~A~~ 432 (487)
+.++...++..|..
T Consensus 213 -s~R~Al~lldqaia 226 (647)
T PRK07994 213 -SMRDALSLTDQAIA 226 (647)
T ss_pred -CHHHHHHHHHHHHH
Confidence 67777788776643
No 62
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=6.5e-20 Score=187.47 Aligned_cols=194 Identities=21% Similarity=0.238 Sum_probs=147.8
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe--------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------- 276 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------- 276 (487)
.+.++|+|.+|++|+|++.+++.|...+. ..+.++.+||+||||+|||++|+++|+.+.+.
T Consensus 5 ~l~~kyrP~~~~~iiGq~~~~~~l~~~~~-----------~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc 73 (363)
T PRK14961 5 ILARKWRPQYFRDIIGQKHIVTAISNGLS-----------LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPC 73 (363)
T ss_pred HHHHHhCCCchhhccChHHHHHHHHHHHH-----------cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 36678999999999999999999998884 22345678999999999999999999997642
Q ss_pred ----------------EEEEecCccchhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 277 ----------------FFNVSASSLTSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 277 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
++.+++.. ...-..++.+.+.+.. ....|+||||+|.+ .....
T Consensus 74 ~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-----------~~~a~ 136 (363)
T PRK14961 74 RKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-----------SRHSF 136 (363)
T ss_pred CCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-----------CHHHH
Confidence 22222211 0122335555544321 23459999999988 23445
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.|+..++. ++..+.+|.+|+.++.+.+++++||. .+.++.|+.++...+++..++..++.++++.+..++..+.
T Consensus 137 naLLk~lEe----~~~~~~fIl~t~~~~~l~~tI~SRc~-~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~ 211 (363)
T PRK14961 137 NALLKTLEE----PPQHIKFILATTDVEKIPKTILSRCL-QFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAH 211 (363)
T ss_pred HHHHHHHhc----CCCCeEEEEEcCChHhhhHHHHhhce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 677877774 33456677777778889999999996 6999999999999999999998888889999999999998
Q ss_pred CCCHHHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAAM 432 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~ 432 (487)
| +.+++.++++.++.
T Consensus 212 G-~~R~al~~l~~~~~ 226 (363)
T PRK14961 212 G-SMRDALNLLEHAIN 226 (363)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 7 67888788777653
No 63
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=6.2e-20 Score=191.39 Aligned_cols=194 Identities=19% Similarity=0.218 Sum_probs=154.7
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC----------
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~---------- 275 (487)
+..+|+|.+|+||+|++.+++.|...+. ..+.++++||+||||+|||++|+.+|+.+++
T Consensus 3 la~KyRP~~f~dliGQe~vv~~L~~a~~-----------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg 71 (491)
T PRK14964 3 LALKYRPSSFKDLVGQDVLVRILRNAFT-----------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCG 71 (491)
T ss_pred hhHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcc
Confidence 5678999999999999999999998774 3455678999999999999999999997543
Q ss_pred --------------eEEEEecCccchhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHHH
Q 011393 276 --------------TFFNVSASSLTSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLKS 337 (487)
Q Consensus 276 --------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~ 337 (487)
.++++++++-. +-..++.+.+.+.. ....|++|||+|.| ....++
T Consensus 72 ~C~~C~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-----------s~~A~N 134 (491)
T PRK14964 72 TCHNCISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHML-----------SNSAFN 134 (491)
T ss_pred ccHHHHHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhC-----------CHHHHH
Confidence 34555554321 23446666655532 24469999999988 234567
Q ss_pred HHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCC
Q 011393 338 EFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEG 417 (487)
Q Consensus 338 ~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G 417 (487)
.|+..|+. +...+++|.+|+.+..+.+++++||. .+.|..++.++....+...+.+.++.++++.+..|++.+.|
T Consensus 135 aLLK~LEe----Pp~~v~fIlatte~~Kl~~tI~SRc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G 209 (491)
T PRK14964 135 ALLKTLEE----PAPHVKFILATTEVKKIPVTIISRCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG 209 (491)
T ss_pred HHHHHHhC----CCCCeEEEEEeCChHHHHHHHHHhhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88888874 44557777788888899999999997 69999999999999999999999999999999999999976
Q ss_pred CCHHHHHHHHHHHHHH
Q 011393 418 YSGSDLQALCEEAAMM 433 (487)
Q Consensus 418 ~s~~dL~~lv~~A~~~ 433 (487)
+.+++..+++.++..
T Consensus 210 -slR~alslLdqli~y 224 (491)
T PRK14964 210 -SMRNALFLLEQAAIY 224 (491)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 788888888877654
No 64
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.83 E-value=2.3e-19 Score=188.50 Aligned_cols=195 Identities=21% Similarity=0.246 Sum_probs=153.5
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeE-------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATF------- 277 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~------- 277 (487)
.|.++|+|.+|+|++|++.+++.|...+. ..+.++++||+||||||||++|+++|+.+++..
T Consensus 10 ~la~kyRP~~f~dliGq~~vv~~L~~ai~-----------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~ 78 (507)
T PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTIL-----------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTT 78 (507)
T ss_pred chhhhhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcC
Confidence 57789999999999999999999988774 234467899999999999999999999986531
Q ss_pred ---------------------EEEecCccchhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHH
Q 011393 278 ---------------------FNVSASSLTSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDAS 332 (487)
Q Consensus 278 ---------------------~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~ 332 (487)
+++++.. ..+...++.+++.+.. ....|+||||+|.|.
T Consensus 79 ~~~C~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls----------- 141 (507)
T PRK06645 79 IKTCEQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS----------- 141 (507)
T ss_pred cCCCCCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-----------
Confidence 2222211 1123456666666632 234699999999882
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHH
Q 011393 333 RRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLV 412 (487)
Q Consensus 333 ~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La 412 (487)
...++.|+..|+. +...+++|.+|+.++.+.+++++||. .+.+..++.++...+++..++..++.++++.+..|+
T Consensus 142 ~~a~naLLk~LEe----pp~~~vfI~aTte~~kI~~tI~SRc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia 216 (507)
T PRK06645 142 KGAFNALLKTLEE----PPPHIIFIFATTEVQKIPATIISRCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIA 216 (507)
T ss_pred HHHHHHHHHHHhh----cCCCEEEEEEeCChHHhhHHHHhcce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3456677777773 34557777778888899999999996 699999999999999999999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHH
Q 011393 413 RETEGYSGSDLQALCEEAAMM 433 (487)
Q Consensus 413 ~~t~G~s~~dL~~lv~~A~~~ 433 (487)
..+.| +.+++.++++.++..
T Consensus 217 ~~s~G-slR~al~~Ldkai~~ 236 (507)
T PRK06645 217 YKSEG-SARDAVSILDQAASM 236 (507)
T ss_pred HHcCC-CHHHHHHHHHHHHHh
Confidence 99987 788888888877544
No 65
>PLN03025 replication factor C subunit; Provisional
Probab=99.83 E-value=2.3e-19 Score=180.48 Aligned_cols=189 Identities=19% Similarity=0.201 Sum_probs=141.3
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC-----CeEEE
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-----ATFFN 279 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~-----~~~~~ 279 (487)
.|+++|+|.+|+|++|++++++.|+.++.. ....++|||||||||||++|+++|+++. ..++.
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~e 69 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARD------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLE 69 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceee
Confidence 589999999999999999999999887641 1224799999999999999999999973 24666
Q ss_pred EecCccchhccchhHHHHHHHHHH-HH------hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCC
Q 011393 280 VSASSLTSKWVGEGEKLVRTLFMV-AI------SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPND 352 (487)
Q Consensus 280 v~~~~l~~~~~g~~~~~i~~~f~~-a~------~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 352 (487)
+++++..+. ..++..+.. +. .....||+|||+|.|. ...++.|+..|+.. ..
T Consensus 70 ln~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----------~~aq~aL~~~lE~~----~~ 128 (319)
T PLN03025 70 LNASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----------SGAQQALRRTMEIY----SN 128 (319)
T ss_pred ecccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----------HHHHHHHHHHHhcc----cC
Confidence 776654321 123332221 11 1235799999999983 23345566666532 22
Q ss_pred cEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHH
Q 011393 353 LVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCE 428 (487)
Q Consensus 353 ~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~ 428 (487)
.+.+|.+||.+..+.+++++||. .+.|+.|+.++....++..+.+.++.++++.+..|+..+.| ..+.+-+.++
T Consensus 129 ~t~~il~~n~~~~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 129 TTRFALACNTSSKIIEPIQSRCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred CceEEEEeCCccccchhHHHhhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 34566678888899999999996 69999999999999999999999999999999999999876 4444444444
No 66
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.83 E-value=1.1e-19 Score=193.77 Aligned_cols=195 Identities=23% Similarity=0.293 Sum_probs=153.2
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe--------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------- 276 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------- 276 (487)
.+.++|+|.+|+||+|++.+++.|..++. ..+.++.+||+||+|||||++|+++|+.+++.
T Consensus 5 vLarKYRP~tFddIIGQe~vv~~L~~ai~-----------~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pC 73 (709)
T PRK08691 5 VLARKWRPKTFADLVGQEHVVKALQNALD-----------EGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPC 73 (709)
T ss_pred hHHHHhCCCCHHHHcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCC
Confidence 36678999999999999999999999885 23446789999999999999999999987653
Q ss_pred ----------------EEEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 277 ----------------FFNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 277 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
++.++... ......++.++..+. .....||||||+|.| .....
T Consensus 74 g~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-----------s~~A~ 136 (709)
T PRK08691 74 GVCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-----------SKSAF 136 (709)
T ss_pred cccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-----------CHHHH
Confidence 12222211 112345666665442 234469999999987 23456
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.||..|+. +...+.+|.+|+.+..+...+++||. .+.|..++.++....+...+.+.++.+++..+..|++.+.
T Consensus 137 NALLKtLEE----Pp~~v~fILaTtd~~kL~~TIrSRC~-~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~ 211 (709)
T PRK08691 137 NAMLKTLEE----PPEHVKFILATTDPHKVPVTVLSRCL-QFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA 211 (709)
T ss_pred HHHHHHHHh----CCCCcEEEEEeCCccccchHHHHHHh-hhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC
Confidence 778888874 33447777788889999999999996 5889999999999999999999999999999999999997
Q ss_pred CCCHHHHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAAMM 433 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~~ 433 (487)
| +.+++..+++.++..
T Consensus 212 G-slRdAlnLLDqaia~ 227 (709)
T PRK08691 212 G-SMRDALSLLDQAIAL 227 (709)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 6 788888888877653
No 67
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=1.6e-19 Score=193.10 Aligned_cols=195 Identities=22% Similarity=0.288 Sum_probs=151.4
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe--------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------- 276 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------- 276 (487)
.|.++|+|.+|+||+|++.+++.|..++. ..+.++.+||+||+|||||++|+++|+.+++.
T Consensus 5 vla~KyRP~~f~dviGQe~vv~~L~~~l~-----------~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~ 73 (618)
T PRK14951 5 VLARKYRPRSFSEMVGQEHVVQALTNALT-----------QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGI 73 (618)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCC
Confidence 36788999999999999999999999885 23445678999999999999999999998652
Q ss_pred ---------------------EEEEecCccchhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchH
Q 011393 277 ---------------------FFNVSASSLTSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDA 331 (487)
Q Consensus 277 ---------------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~ 331 (487)
++.+++..- .+-..++.+.+.+.. ....|+||||+|.|
T Consensus 74 ~~~pCg~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L----------- 136 (618)
T PRK14951 74 TATPCGVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML----------- 136 (618)
T ss_pred CCCCCCccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhC-----------
Confidence 223322211 122345666655432 22359999999998
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHH
Q 011393 332 SRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERL 411 (487)
Q Consensus 332 ~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~L 411 (487)
.....+.|+..|+. +...+++|.+|+.+..+.+.+++||. .+.|..++.++....++..+.+.++.+++..+..|
T Consensus 137 s~~a~NaLLKtLEE----PP~~~~fIL~Ttd~~kil~TIlSRc~-~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~L 211 (618)
T PRK14951 137 TNTAFNAMLKTLEE----PPEYLKFVLATTDPQKVPVTVLSRCL-QFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLL 211 (618)
T ss_pred CHHHHHHHHHhccc----CCCCeEEEEEECCchhhhHHHHHhce-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34456778887774 44557777778888999999999996 79999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHH
Q 011393 412 VRETEGYSGSDLQALCEEAAMM 433 (487)
Q Consensus 412 a~~t~G~s~~dL~~lv~~A~~~ 433 (487)
+..+.| +.+++.+++..++..
T Consensus 212 a~~s~G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 212 ARAARG-SMRDALSLTDQAIAF 232 (618)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh
Confidence 999987 788888887766543
No 68
>PRK04195 replication factor C large subunit; Provisional
Probab=99.83 E-value=3.9e-19 Score=188.34 Aligned_cols=186 Identities=23% Similarity=0.281 Sum_probs=143.6
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~ 284 (487)
.|+++|+|.+++||+|++.+++.|..++.... .+.+++++|||||||||||++|+++|++++..++.+++++
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~--------~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWL--------KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 69999999999999999999999999985332 1234678999999999999999999999999999999887
Q ss_pred cchhccchhHHHHHHHHHHHHh------cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 011393 285 LTSKWVGEGEKLVRTLFMVAIS------RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMG 358 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~------~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ 358 (487)
.... ..+..+...+.. ..+.||+|||+|.|.... .......|+..++. .. ..+|+
T Consensus 75 ~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d~~~~~aL~~~l~~----~~--~~iIl 135 (482)
T PRK04195 75 QRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------DRGGARAILELIKK----AK--QPIIL 135 (482)
T ss_pred cccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------chhHHHHHHHHHHc----CC--CCEEE
Confidence 5432 123333322211 256799999999985421 12334555555552 12 34566
Q ss_pred ecCCCCCCCH-HHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCC
Q 011393 359 ATNKPQELDD-AVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGY 418 (487)
Q Consensus 359 ttn~~~~ld~-al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~ 418 (487)
++|.+..+.. .+++|+. .+.|+.|+..+...+++..+...++.+++..++.|++.+.|.
T Consensus 136 i~n~~~~~~~k~Lrsr~~-~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GD 195 (482)
T PRK04195 136 TANDPYDPSLRELRNACL-MIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGD 195 (482)
T ss_pred eccCccccchhhHhccce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 7888888887 6777775 799999999999999999999999999999999999998763
No 69
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.3e-19 Score=181.92 Aligned_cols=205 Identities=25% Similarity=0.369 Sum_probs=161.7
Q ss_pred CCCcccccChHHHHHHHHHHhhccccChhhhhccCCCC-ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhcc
Q 011393 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPA-RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWV 290 (487)
Q Consensus 212 ~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~-~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~ 290 (487)
+.+|+.++--.+.|+.|.+-+..+....+++.+.++|+ +|.|||||||||||+++.|+|++++..++.++.++....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 47899999999999999999999999999999988886 689999999999999999999999999999998776432
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc-----ch--HHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 011393 291 GEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE-----ND--ASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 363 (487)
Q Consensus 291 g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~-----~~--~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~ 363 (487)
.. ++.++..+ ...+||+|+|||.-+.-+.... .+ ...-.++.||..+||+-..-++--|||.|||.+
T Consensus 275 ---~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 275 ---SD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred ---HH-HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 22 66666554 3458999999998754322111 11 233557889999999977655556888999999
Q ss_pred CCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCC-CCCChhhHHHHHHHcCCCCHHHHHHH
Q 011393 364 QELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQA-FSLPGGDLERLVRETEGYSGSDLQAL 426 (487)
Q Consensus 364 ~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~-~~l~~~~l~~La~~t~G~s~~dL~~l 426 (487)
+.|||||+| |++.+|++..-+.++.+.++..++.... ..+- .+++.+...+. .||+|+...
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~-~eie~l~~~~~-~tPA~V~e~ 412 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLF-DEIERLIEETE-VTPAQVAEE 412 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchh-HHHHHHhhcCc-cCHHHHHHH
Confidence 999999999 9999999999999999999999998643 3222 23344444333 588888644
No 70
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=5.1e-19 Score=186.68 Aligned_cols=193 Identities=23% Similarity=0.312 Sum_probs=148.6
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe--------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------- 276 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------- 276 (487)
.+.++|+|.+|+||+|++.+++.|..++.. ...++.+|||||||||||++|+++|+.+.+.
T Consensus 3 ~l~~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg 71 (504)
T PRK14963 3 ALYQRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCG 71 (504)
T ss_pred hHHHhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCC
Confidence 456789999999999999999999998852 2345567999999999999999999987541
Q ss_pred ---------------EEEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHHH
Q 011393 277 ---------------FFNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLKS 337 (487)
Q Consensus 277 ---------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~ 337 (487)
++.+++..- ..-..++.+...+. ...+.||||||+|.+ ....++
T Consensus 72 ~C~sc~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-----------s~~a~n 134 (504)
T PRK14963 72 ECESCLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-----------SKSAFN 134 (504)
T ss_pred cChhhHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECcccc-----------CHHHHH
Confidence 344443211 11233455444332 235579999999977 234567
Q ss_pred HHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCC
Q 011393 338 EFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEG 417 (487)
Q Consensus 338 ~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G 417 (487)
.|+..|+. +...+++|.+++.+..+.+.+.+||. .+.|..|+.++...++...+...++.++++.+..|+..+.|
T Consensus 135 aLLk~LEe----p~~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 135 ALLKTLEE----PPEHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHHHHh----CCCCEEEEEEcCChhhCChHHhcceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 78887774 33446777778888999999999998 69999999999999999999999999999999999999987
Q ss_pred CCHHHHHHHHHHHH
Q 011393 418 YSGSDLQALCEEAA 431 (487)
Q Consensus 418 ~s~~dL~~lv~~A~ 431 (487)
+.+++.++++.++
T Consensus 210 -dlR~aln~Lekl~ 222 (504)
T PRK14963 210 -AMRDAESLLERLL 222 (504)
T ss_pred -CHHHHHHHHHHHH
Confidence 5677777777654
No 71
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=5.7e-19 Score=186.66 Aligned_cols=194 Identities=20% Similarity=0.261 Sum_probs=148.4
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC---------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA--------- 275 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~--------- 275 (487)
.+.++|+|.+|++|+|++.+++.|...+. ..+.++.+||+||||||||++|+++|+.+.+
T Consensus 5 ~La~KyRP~~f~diiGq~~~v~~L~~~i~-----------~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pC 73 (546)
T PRK14957 5 ALARKYRPQSFAEVAGQQHALNSLVHALE-----------TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPC 73 (546)
T ss_pred hHHHHHCcCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 36778999999999999999999998884 2234566899999999999999999998764
Q ss_pred ---------------eEEEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 276 ---------------TFFNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 276 ---------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
.++.+++..- . +-..++.+++.+. .....|+||||+|.| ....+
T Consensus 74 g~C~sC~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------s~~a~ 136 (546)
T PRK14957 74 NKCENCVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------SKQSF 136 (546)
T ss_pred cccHHHHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------cHHHH
Confidence 2333332111 1 1123344444332 234569999999998 34567
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.|+..|+. ++..+++|++|+.+..+.+++++||. .+.|..++.++....+...+.+.++.+++..+..|+..+.
T Consensus 137 naLLK~LEe----pp~~v~fIL~Ttd~~kil~tI~SRc~-~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~ 211 (546)
T PRK14957 137 NALLKTLEE----PPEYVKFILATTDYHKIPVTILSRCI-QLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK 211 (546)
T ss_pred HHHHHHHhc----CCCCceEEEEECChhhhhhhHHHhee-eEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 788888874 34456677777778889989999996 7999999999999999999988899999999999999997
Q ss_pred CCCHHHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAAM 432 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~ 432 (487)
| +.+++-++++.++.
T Consensus 212 G-dlR~alnlLek~i~ 226 (546)
T PRK14957 212 G-SLRDALSLLDQAIS 226 (546)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 6 67788888877654
No 72
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.81 E-value=1.5e-18 Score=180.48 Aligned_cols=189 Identities=28% Similarity=0.393 Sum_probs=141.8
Q ss_pred cccCCCCCCcccccChHHHHHH---HHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEec
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQA---LMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~---L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~ 282 (487)
|.++++|.+++|++|++++... |..++.. ....+++|+||||||||++|+++|+..+..|+.+++
T Consensus 2 la~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred hhhhhCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 6778999999999999999666 7777731 223589999999999999999999999999999987
Q ss_pred CccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 011393 283 SSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMG 358 (487)
Q Consensus 283 ~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ 358 (487)
.... ...++.+++.+. .....||||||+|.+. ...+..|+..++. ..+++|+
T Consensus 70 ~~~~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----------~~~q~~LL~~le~------~~iilI~ 125 (413)
T PRK13342 70 VTSG-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----------KAQQDALLPHVED------GTITLIG 125 (413)
T ss_pred cccc-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----------HHHHHHHHHHhhc------CcEEEEE
Confidence 6432 223444554442 2356899999999883 2334556666653 2356666
Q ss_pred ec--CCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccC--CC-CCChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 011393 359 AT--NKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQ--AF-SLPGGDLERLVRETEGYSGSDLQALCEEAAM 432 (487)
Q Consensus 359 tt--n~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~--~~-~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~ 432 (487)
+| |....+++++++||. .+.++.++.++...+++..+... ++ .++++.++.|++.+.| ..+.+.++++.++.
T Consensus 126 att~n~~~~l~~aL~SR~~-~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~ 202 (413)
T PRK13342 126 ATTENPSFEVNPALLSRAQ-VFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAAL 202 (413)
T ss_pred eCCCChhhhccHHHhccce-eeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 54 444588999999995 78999999999999999887642 44 6788899999999866 56677777776653
No 73
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.81 E-value=6.2e-19 Score=194.66 Aligned_cols=193 Identities=21% Similarity=0.233 Sum_probs=148.6
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe--------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------- 276 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------- 276 (487)
.|.+||++.+|++|+|++.+++.|+.++. ..+.++.+||+||+|||||++|++||+.+.|.
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~-----------~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pC 72 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALD-----------SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPC 72 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCC
Confidence 36689999999999999999999999884 23445678999999999999999999998752
Q ss_pred ------------------EEEEecCccchhccchhHHHHHHHHHHH----HhcCCcEEEechhhhhhccCCCCcchHHHH
Q 011393 277 ------------------FFNVSASSLTSKWVGEGEKLVRTLFMVA----ISRQPCVIFIDEIDSIMSTRMANENDASRR 334 (487)
Q Consensus 277 ------------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~ 334 (487)
|+.++..... .-..++.+.+.+ ......|+||||+|.| ...
T Consensus 73 g~C~sC~~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------t~~ 135 (824)
T PRK07764 73 GECDSCVALAPGGPGSLDVTEIDAASHG------GVDDARELRERAFFAPAESRYKIFIIDEAHMV-----------TPQ 135 (824)
T ss_pred cccHHHHHHHcCCCCCCcEEEecccccC------CHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------CHH
Confidence 2223221110 122333433322 2345569999999999 345
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHH
Q 011393 335 LKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRE 414 (487)
Q Consensus 335 ~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~ 414 (487)
..+.||+.|+. +...+++|++|+.++.|.++|++||. .+.|..++.++...+|...+.+.++.+++..+..|+..
T Consensus 136 a~NaLLK~LEE----pP~~~~fIl~tt~~~kLl~TIrSRc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~ 210 (824)
T PRK07764 136 GFNALLKIVEE----PPEHLKFIFATTEPDKVIGTIRSRTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRA 210 (824)
T ss_pred HHHHHHHHHhC----CCCCeEEEEEeCChhhhhHHHHhhee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 67788888884 34457777778888889999999997 68999999999999999999999999899999999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q 011393 415 TEGYSGSDLQALCEEAA 431 (487)
Q Consensus 415 t~G~s~~dL~~lv~~A~ 431 (487)
+.| +.+++..+++..+
T Consensus 211 sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 211 GGG-SVRDSLSVLDQLL 226 (824)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 877 6777777777655
No 74
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=8.7e-19 Score=186.31 Aligned_cols=192 Identities=21% Similarity=0.245 Sum_probs=145.6
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe--------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------- 276 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------- 276 (487)
.|.++|+|.+|+||+|++.+++.|..++. ..+.+..+||+||||||||++|+++|+.+.+.
T Consensus 5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~-----------~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC 73 (624)
T PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQ-----------ENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC 73 (624)
T ss_pred hHHHHhCCCCHHHhcCCHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC
Confidence 47788999999999999999999999884 22335689999999999999999999998753
Q ss_pred ----------------EEEEecCccchhccchhHHHHHHHHHHH----HhcCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 277 ----------------FFNVSASSLTSKWVGEGEKLVRTLFMVA----ISRQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 277 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
++.+++..-. .-..++.+.+.. ......||||||+|.| ....+
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~~~------~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-----------t~~a~ 136 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGASNR------GIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-----------TREAF 136 (624)
T ss_pred cccHHHHHHhcCCCCceEEEeccccc------CHHHHHHHHHHHHhhhhcCCceEEEEEChHhC-----------CHHHH
Confidence 3344332110 112233332222 2234569999999998 24456
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.|+..|+. +...+++|++|+.+..+...+++||. .+.|+.++.++...+++..+...++.++++.++.|+..+.
T Consensus 137 naLLk~LEE----P~~~~ifILaTt~~~kll~TI~SRcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~ 211 (624)
T PRK14959 137 NALLKTLEE----PPARVTFVLATTEPHKFPVTIVSRCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAA 211 (624)
T ss_pred HHHHHHhhc----cCCCEEEEEecCChhhhhHHHHhhhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 778888774 33457788888888999999999997 6899999999999999999988888899999999999998
Q ss_pred CCCHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEA 430 (487)
Q Consensus 417 G~s~~dL~~lv~~A 430 (487)
| +.+++-.+++.+
T Consensus 212 G-dlR~Al~lLeql 224 (624)
T PRK14959 212 G-SVRDSMSLLGQV 224 (624)
T ss_pred C-CHHHHHHHHHHH
Confidence 7 455555555544
No 75
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.81 E-value=9.6e-19 Score=185.09 Aligned_cols=194 Identities=19% Similarity=0.249 Sum_probs=149.2
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC---------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA--------- 275 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~--------- 275 (487)
.|.++|+|.+|++++|++.+++.|..++. ..+.++++||+||||+|||++|+++|+.+.+
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C 73 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC 73 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 57889999999999999999999998874 2344578999999999999999999998754
Q ss_pred ---------------eEEEEecCccchhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 276 ---------------TFFNVSASSLTSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 276 ---------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
.++.+++... .+-..++.+...+.. ....|++|||+|.|- ....
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----------~~A~ 136 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----------TSAW 136 (605)
T ss_pred cccHHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----------HHHH
Confidence 2233332211 112335555544432 234599999999882 2345
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.|+..|+. ++..+++|.+|+.+..+.+++++||. .+.|..|+.++....+...+.+.++.+++..+..|+..+.
T Consensus 137 NaLLKtLEE----Pp~~tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~ 211 (605)
T PRK05896 137 NALLKTLEE----PPKHVVFIFATTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLAD 211 (605)
T ss_pred HHHHHHHHh----CCCcEEEEEECCChHhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 778888874 34457777788889999999999998 6999999999999999999988888899999999999998
Q ss_pred CCCHHHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAAM 432 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~ 432 (487)
| +.+++..+++.++.
T Consensus 212 G-dlR~AlnlLekL~~ 226 (605)
T PRK05896 212 G-SLRDGLSILDQLST 226 (605)
T ss_pred C-cHHHHHHHHHHHHh
Confidence 7 67777777776443
No 76
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.81 E-value=1.2e-18 Score=187.76 Aligned_cols=200 Identities=20% Similarity=0.275 Sum_probs=151.6
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE---e
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNV---S 281 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v---~ 281 (487)
.|.++|+|.+|++|+|++.+++.|...+. ..+.++.+|||||+|+|||++|+++|+.+.+.-... .
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~-----------~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p 75 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIK-----------SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP 75 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc
Confidence 57889999999999999999999999884 234456789999999999999999999876632100 1
Q ss_pred cCccc------hhcc---c---hhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcC
Q 011393 282 ASSLT------SKWV---G---EGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDG 345 (487)
Q Consensus 282 ~~~l~------~~~~---g---~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~ 345 (487)
|..+. ..+. + .+...++.+.+.+.. ....|++|||+|.|. ....+.|+..|+.
T Consensus 76 C~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-----------~~A~NALLKtLEE 144 (725)
T PRK07133 76 CQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-----------KSAFNALLKTLEE 144 (725)
T ss_pred hhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-----------HHHHHHHHHHhhc
Confidence 11100 0000 0 123446666665532 344699999999982 3456788888874
Q ss_pred CCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHH
Q 011393 346 VTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQA 425 (487)
Q Consensus 346 ~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~ 425 (487)
++..+++|++|+.++.|.+++++||. ++.|..++.++....+...+.+.++.+++..+..|+..+.| +.+++..
T Consensus 145 ----PP~~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Als 218 (725)
T PRK07133 145 ----PPKHVIFILATTEVHKIPLTILSRVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALS 218 (725)
T ss_pred ----CCCceEEEEEcCChhhhhHHHHhhce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 44557778888889999999999997 79999999999999999999888888889999999999987 6777777
Q ss_pred HHHHHHH
Q 011393 426 LCEEAAM 432 (487)
Q Consensus 426 lv~~A~~ 432 (487)
+++.++.
T Consensus 219 lLekl~~ 225 (725)
T PRK07133 219 IAEQVSI 225 (725)
T ss_pred HHHHHHH
Confidence 7776543
No 77
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=6e-19 Score=187.68 Aligned_cols=194 Identities=24% Similarity=0.299 Sum_probs=150.8
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe---------
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--------- 276 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~--------- 276 (487)
+.++|+|.+|+||+|++.+++.|..++. ..+.++.+||+||||+|||++|+++|+.+++.
T Consensus 6 l~~k~rP~~f~divGq~~v~~~L~~~i~-----------~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg 74 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALE-----------QQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG 74 (527)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHH-----------cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 5678999999999999999999998885 23445678999999999999999999998653
Q ss_pred ---------------EEEEecCccchhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHHH
Q 011393 277 ---------------FFNVSASSLTSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLKS 337 (487)
Q Consensus 277 ---------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~ 337 (487)
++.++++. ...-..++.+...+.. ....|+||||+|.| .....+
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-----------s~~a~n 137 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-----------SKSAFN 137 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-----------CHHHHH
Confidence 22222211 1123445666665532 23469999999988 234567
Q ss_pred HHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCC
Q 011393 338 EFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEG 417 (487)
Q Consensus 338 ~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G 417 (487)
.|+..|+. +...+++|.+|+.++.+.+.+++||. .+.|..++.++....+...+.+.++.+++..+..|+..+.|
T Consensus 138 aLLK~LEe----pp~~~~fIL~t~d~~kil~tI~SRc~-~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G 212 (527)
T PRK14969 138 AMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRCL-QFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG 212 (527)
T ss_pred HHHHHHhC----CCCCEEEEEEeCChhhCchhHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88888874 34557777778888899889999996 69999999999999999999888888899999999999877
Q ss_pred CCHHHHHHHHHHHHHH
Q 011393 418 YSGSDLQALCEEAAMM 433 (487)
Q Consensus 418 ~s~~dL~~lv~~A~~~ 433 (487)
+.+++.++++.++..
T Consensus 213 -slr~al~lldqai~~ 227 (527)
T PRK14969 213 -SMRDALSLLDQAIAY 227 (527)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 678888888777543
No 78
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1.3e-18 Score=185.50 Aligned_cols=193 Identities=19% Similarity=0.229 Sum_probs=148.7
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe---------
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--------- 276 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~--------- 276 (487)
|.++|+|.+|+||+|++.+++.|..++. ..+.++.+||+||+|||||++|+++|+.+++.
T Consensus 3 l~~kyRP~~f~eivGq~~i~~~L~~~i~-----------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 71 (584)
T PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALD-----------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCG 71 (584)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccc
Confidence 4578999999999999999999999985 23445568999999999999999999987642
Q ss_pred -----------------EEEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHH
Q 011393 277 -----------------FFNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRL 335 (487)
Q Consensus 277 -----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~ 335 (487)
++.++++... +-..++.+.+.+. .....|+||||+|.| ....
T Consensus 72 ~C~~C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-----------t~~A 134 (584)
T PRK14952 72 VCESCVALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-----------TTAG 134 (584)
T ss_pred ccHHHHHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-----------CHHH
Confidence 2233322111 1233444433332 234469999999998 3446
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHc
Q 011393 336 KSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRET 415 (487)
Q Consensus 336 ~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t 415 (487)
++.||..|+. +...+++|.+|+.++.+.+++++||. ++.|..++.++....+..++.+.++.+++..+..++..+
T Consensus 135 ~NALLK~LEE----pp~~~~fIL~tte~~kll~TI~SRc~-~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s 209 (584)
T PRK14952 135 FNALLKIVEE----PPEHLIFIFATTEPEKVLPTIRSRTH-HYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAG 209 (584)
T ss_pred HHHHHHHHhc----CCCCeEEEEEeCChHhhHHHHHHhce-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 7788888884 44557888888888999999999986 799999999999999999999999989999999999988
Q ss_pred CCCCHHHHHHHHHHHHH
Q 011393 416 EGYSGSDLQALCEEAAM 432 (487)
Q Consensus 416 ~G~s~~dL~~lv~~A~~ 432 (487)
.| +.+++.++++.++.
T Consensus 210 ~G-dlR~aln~Ldql~~ 225 (584)
T PRK14952 210 GG-SPRDTLSVLDQLLA 225 (584)
T ss_pred CC-CHHHHHHHHHHHHh
Confidence 76 67788788777654
No 79
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.80 E-value=1.1e-18 Score=194.45 Aligned_cols=233 Identities=22% Similarity=0.262 Sum_probs=160.4
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccc---------
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT--------- 286 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~--------- 286 (487)
++++|++.+++.+.+++....... ...+.++||+||||||||++|+++|+.++.+|+.+++..+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 358999999999999886443221 12234799999999999999999999999999999876432
Q ss_pred hhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcC-----CC----C--CCCCcEE
Q 011393 287 SKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDG-----VT----S--NPNDLVI 355 (487)
Q Consensus 287 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~~----~--~~~~~vi 355 (487)
..|+|.....+...|..+....| ||||||||.+.+....+ ..+.|+..|+. +. . ....+++
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 24666666677777777755555 89999999997543211 12344444441 10 0 0113588
Q ss_pred EEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHh-----cc-----CCCCCChhhHHHHHHHcC-CCCHHHHH
Q 011393 356 VMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKL-----KG-----QAFSLPGGDLERLVRETE-GYSGSDLQ 424 (487)
Q Consensus 356 vI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l-----~~-----~~~~l~~~~l~~La~~t~-G~s~~dL~ 424 (487)
+|+|||.++.+++++++||. .|.|+.|+.+++.+|++.++ .. ..+.++++.+..|++... .+..++|+
T Consensus 466 ~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~ 544 (775)
T TIGR00763 466 FIATANSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLE 544 (775)
T ss_pred EEEecCCchhCCHHHhCCee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHH
Confidence 99999999999999999996 79999999999999998776 22 235678889998887533 45567777
Q ss_pred HHHHHHHHHhHHhhccchhcccc-ccCCCCcHHHHHHHHH
Q 011393 425 ALCEEAAMMPIRELGTNILTVKA-NQLRPLRYEDFQKAMA 463 (487)
Q Consensus 425 ~lv~~A~~~a~~~~~~~~~~~~~-~~~~~l~~~df~~al~ 463 (487)
..+...+..+.+++......... .-...++.+++.+.+.
T Consensus 545 r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 545 RQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred HHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 77777666555543210000000 0013577777766654
No 80
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.80 E-value=3.7e-18 Score=173.07 Aligned_cols=197 Identities=17% Similarity=0.210 Sum_probs=139.7
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC-----CeEEE
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-----ATFFN 279 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~-----~~~~~ 279 (487)
.|.++|+|.+|++++|++.+++.|..++.. . ...++||+||||||||++|+++++++. .+++.
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~-----------~-~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~ 71 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDS-----------P-NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTE 71 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhC-----------C-CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEE
Confidence 589999999999999999999999988741 1 123799999999999999999999874 34677
Q ss_pred EecCccchhc-------------cch-------hHHHHHHHHHHHHh-----cCCcEEEechhhhhhccCCCCcchHHHH
Q 011393 280 VSASSLTSKW-------------VGE-------GEKLVRTLFMVAIS-----RQPCVIFIDEIDSIMSTRMANENDASRR 334 (487)
Q Consensus 280 v~~~~l~~~~-------------~g~-------~~~~i~~~f~~a~~-----~~p~Il~IDEiD~l~~~~~~~~~~~~~~ 334 (487)
+++.++...+ .+. ....++.+...... ..+.+|||||+|.+.. .
T Consensus 72 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-----------~ 140 (337)
T PRK12402 72 FNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-----------D 140 (337)
T ss_pred echhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------H
Confidence 8876653221 000 11223333222212 2346999999998821 2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHH
Q 011393 335 LKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRE 414 (487)
Q Consensus 335 ~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~ 414 (487)
....|...++... ..+.+|.+++.+..+.+.+++|+. .+.+.+|+.++...+++..+.+.++.++++.++.|+..
T Consensus 141 ~~~~L~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~~-~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~ 215 (337)
T PRK12402 141 AQQALRRIMEQYS----RTCRFIIATRQPSKLIPPIRSRCL-PLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYY 215 (337)
T ss_pred HHHHHHHHHHhcc----CCCeEEEEeCChhhCchhhcCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 2334555555332 123445556566778888999986 68999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 011393 415 TEGYSGSDLQALCEEA 430 (487)
Q Consensus 415 t~G~s~~dL~~lv~~A 430 (487)
+.| +.+++...++.+
T Consensus 216 ~~g-dlr~l~~~l~~~ 230 (337)
T PRK12402 216 AGG-DLRKAILTLQTA 230 (337)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 854 555555555443
No 81
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=1.6e-18 Score=185.75 Aligned_cols=194 Identities=23% Similarity=0.283 Sum_probs=151.3
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC---------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA--------- 275 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~--------- 275 (487)
.|.++|+|.+|++|+|++.+++.|+..+. ..+.++.+||+||+|||||++|+.+|+.+++
T Consensus 5 al~~k~rP~~f~~viGq~~v~~~L~~~i~-----------~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC 73 (559)
T PRK05563 5 ALYRKWRPQTFEDVVGQEHITKTLKNAIK-----------QGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPC 73 (559)
T ss_pred HHHHHhCCCcHHhccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 45678999999999999999999999885 2344667999999999999999999998753
Q ss_pred ---------------eEEEEecCccchhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 276 ---------------TFFNVSASSLTSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 276 ---------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
.++.+++.. +.+-..++.+.+.+.. ....|+||||+|.| .....
T Consensus 74 ~~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-----------t~~a~ 136 (559)
T PRK05563 74 NECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-----------STGAF 136 (559)
T ss_pred CccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHH
Confidence 233443321 1223455666655432 23469999999988 23456
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.|+..++. ++..+++|.+|+.++.+.+++++||. .+.|+.|+.++....++..+.+.++.+++..+..|+..+.
T Consensus 137 naLLKtLEe----pp~~~ifIlatt~~~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~ 211 (559)
T PRK05563 137 NALLKTLEE----PPAHVIFILATTEPHKIPATILSRCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAE 211 (559)
T ss_pred HHHHHHhcC----CCCCeEEEEEeCChhhCcHHHHhHhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 788887773 34457777777888999999999998 6899999999999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAAM 432 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~ 432 (487)
| +.+++..+++.+..
T Consensus 212 G-~~R~al~~Ldq~~~ 226 (559)
T PRK05563 212 G-GMRDALSILDQAIS 226 (559)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 7 67777777776644
No 82
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=1.9e-18 Score=181.78 Aligned_cols=196 Identities=22% Similarity=0.239 Sum_probs=151.5
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC---------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA--------- 275 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~--------- 275 (487)
.|.++|+|.+|++|+|++.+++.|...+. .++.++.+|||||+|+|||++|+++|+.+.+
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~-----------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC 71 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALD-----------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPC 71 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCC
Confidence 46789999999999999999999999884 2344567899999999999999999998642
Q ss_pred ---------------eEEEEecCccchhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 276 ---------------TFFNVSASSLTSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 276 ---------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
.++.+++..- .+-..++.+...... ....|++|||+|.| ....+
T Consensus 72 ~~C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t~~A~ 134 (535)
T PRK08451 72 DTCIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------TKEAF 134 (535)
T ss_pred cccHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHH
Confidence 2333332211 012345555544321 22359999999988 34567
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.|+..|+.. +..+.+|.+|+.+..|.+++++|+. .+.|..++.++....+...+...++.++++.+..|+..+.
T Consensus 135 NALLK~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~ 209 (535)
T PRK08451 135 NALLKTLEEP----PSYVKFILATTDPLKLPATILSRTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGN 209 (535)
T ss_pred HHHHHHHhhc----CCceEEEEEECChhhCchHHHhhce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7888888743 3446666677778999999999986 7999999999999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 011393 417 GYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~~a 434 (487)
| +.+++..+++.++..+
T Consensus 210 G-dlR~alnlLdqai~~~ 226 (535)
T PRK08451 210 G-SLRDTLTLLDQAIIYC 226 (535)
T ss_pred C-cHHHHHHHHHHHHHhc
Confidence 7 7888888888776554
No 83
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=1.5e-18 Score=186.59 Aligned_cols=194 Identities=20% Similarity=0.241 Sum_probs=150.6
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe---------
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--------- 276 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~--------- 276 (487)
+.++|+|.+|+||+|++++++.|..++. .++.++.+|||||+|+|||++|+++|+.+++.
T Consensus 6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~-----------~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~ 74 (576)
T PRK14965 6 LARKYRPQTFSDLTGQEHVSRTLQNAID-----------TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN 74 (576)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 5678999999999999999999999884 23445678999999999999999999997642
Q ss_pred ---------------EEEEecCccchhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHHH
Q 011393 277 ---------------FFNVSASSLTSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLKS 337 (487)
Q Consensus 277 ---------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~ 337 (487)
++.+++..- ..-..++.+.+.+.. ....|+||||+|.| .....+
T Consensus 75 ~c~~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-----------t~~a~n 137 (576)
T PRK14965 75 VCPPCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-----------STNAFN 137 (576)
T ss_pred ccHHHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhC-----------CHHHHH
Confidence 333332211 122345565554432 23359999999988 234567
Q ss_pred HHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCC
Q 011393 338 EFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEG 417 (487)
Q Consensus 338 ~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G 417 (487)
.|+..|+. +...+++|.+|+.++.|.+++++||. .+.|..++.++....+...+.+.++.+++..+..|+..+.|
T Consensus 138 aLLk~LEe----pp~~~~fIl~t~~~~kl~~tI~SRc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G 212 (576)
T PRK14965 138 ALLKTLEE----PPPHVKFIFATTEPHKVPITILSRCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG 212 (576)
T ss_pred HHHHHHHc----CCCCeEEEEEeCChhhhhHHHHHhhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 88888874 44557788888889999999999997 68999999999999999999999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHH
Q 011393 418 YSGSDLQALCEEAAMM 433 (487)
Q Consensus 418 ~s~~dL~~lv~~A~~~ 433 (487)
+.+++..+++.++..
T Consensus 213 -~lr~al~~Ldqliay 227 (576)
T PRK14965 213 -SMRDSLSTLDQVLAF 227 (576)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 667777777665443
No 84
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.79 E-value=2.1e-18 Score=176.26 Aligned_cols=194 Identities=23% Similarity=0.304 Sum_probs=148.0
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe--------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------- 276 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------- 276 (487)
.|.++++|.+|++++|++.+++.|.+.+. .+..++.+|||||||+|||++|+++++.+.+.
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~-----------~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c 71 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIK-----------NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPC 71 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 47889999999999999999999998884 23345679999999999999999999987532
Q ss_pred ----------------EEEEecCccchhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 277 ----------------FFNVSASSLTSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 277 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
++.+++.. ......++.+++.+.. ....||+|||+|.+. ....
T Consensus 72 ~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-----------~~~~ 134 (355)
T TIGR02397 72 NECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-----------KSAF 134 (355)
T ss_pred CCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-----------HHHH
Confidence 23333221 1122345566665532 233599999999882 3345
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.++..++. +...+++|.+|+.+..+.+++++||. .+.++.|+.++...++..++++.++.+++..+..|+..+.
T Consensus 135 ~~Ll~~le~----~~~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~ 209 (355)
T TIGR02397 135 NALLKTLEE----PPEHVVFILATTEPHKIPATILSRCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAAD 209 (355)
T ss_pred HHHHHHHhC----CccceeEEEEeCCHHHHHHHHHhhee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 677777764 23446777777888888999999996 6899999999999999999999998899999999999987
Q ss_pred CCCHHHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAAM 432 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~ 432 (487)
| +.+.+.+.++.++.
T Consensus 210 g-~~~~a~~~lekl~~ 224 (355)
T TIGR02397 210 G-SLRDALSLLDQLIS 224 (355)
T ss_pred C-ChHHHHHHHHHHHh
Confidence 6 67777777766654
No 85
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=3.4e-18 Score=179.87 Aligned_cols=195 Identities=21% Similarity=0.290 Sum_probs=147.0
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe--------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------- 276 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------- 276 (487)
.|.++|+|.+|++++|++.+++.|...+. ..+.++.+|||||+|+|||++|+.+|+.+++.
T Consensus 5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~-----------~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc 73 (486)
T PRK14953 5 PFARKYRPKFFKEVIGQEIVVRILKNAVK-----------LQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPC 73 (486)
T ss_pred HHHHhhCCCcHHHccChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCC
Confidence 57889999999999999999999999884 23445678999999999999999999987641
Q ss_pred ----------------EEEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 277 ----------------FFNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 277 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
++.++++.- ..-..++.+.+.+. .....|++|||+|.|. ....
T Consensus 74 ~~c~nc~~i~~g~~~d~~eidaas~------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-----------~~a~ 136 (486)
T PRK14953 74 GKCENCVEIDKGSFPDLIEIDAASN------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-----------KEAF 136 (486)
T ss_pred CccHHHHHHhcCCCCcEEEEeCccC------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-----------HHHH
Confidence 222222110 11223445544443 2345699999999882 3445
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.|+..++. ++..+++|.+|+.++.+.+++++||. .+.|+.|+.++...++...+...++.+++..+..|+..+.
T Consensus 137 naLLk~LEe----pp~~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~ 211 (486)
T PRK14953 137 NALLKTLEE----PPPRTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASE 211 (486)
T ss_pred HHHHHHHhc----CCCCeEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 677777764 23335555566778889999999997 6999999999999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAAMM 433 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~~ 433 (487)
| +.+++.++++.++..
T Consensus 212 G-~lr~al~~Ldkl~~~ 227 (486)
T PRK14953 212 G-GMRDAASLLDQASTY 227 (486)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 7 677888887776543
No 86
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=1.4e-17 Score=174.04 Aligned_cols=193 Identities=18% Similarity=0.233 Sum_probs=145.1
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe--------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------- 276 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------- 276 (487)
.+.++|+|.+|+||+|++.+++.|...+. .++.++.+|||||||+|||++|+++|+.+.+.
T Consensus 6 ~~~~kyRP~~~~diiGq~~~v~~L~~~i~-----------~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (451)
T PRK06305 6 VSSRKYRPQTFSEILGQDAVVAVLKNALR-----------FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEP 74 (451)
T ss_pred HHHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCC
Confidence 35678999999999999999999999884 23445679999999999999999999987542
Q ss_pred -----------------EEEEecCccchhccchhHHHHHHHHHHH----HhcCCcEEEechhhhhhccCCCCcchHHHHH
Q 011393 277 -----------------FFNVSASSLTSKWVGEGEKLVRTLFMVA----ISRQPCVIFIDEIDSIMSTRMANENDASRRL 335 (487)
Q Consensus 277 -----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~ 335 (487)
++.+++.... +-..++.+.+.. ......||||||+|.|. ...
T Consensus 75 c~~c~~C~~i~~~~~~d~~~i~g~~~~------gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt-----------~~~ 137 (451)
T PRK06305 75 CNQCASCKEISSGTSLDVLEIDGASHR------GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-----------KEA 137 (451)
T ss_pred CcccHHHHHHhcCCCCceEEeeccccC------CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-----------HHH
Confidence 2333321110 112233332222 22456799999999982 334
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHc
Q 011393 336 KSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRET 415 (487)
Q Consensus 336 ~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t 415 (487)
.+.|+..|+. +...+++|++|+.+..|.+++++||. .+.|..++.++....+...+++.++.++++.++.|+..+
T Consensus 138 ~n~LLk~lEe----p~~~~~~Il~t~~~~kl~~tI~sRc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s 212 (451)
T PRK06305 138 FNSLLKTLEE----PPQHVKFFLATTEIHKIPGTILSRCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAA 212 (451)
T ss_pred HHHHHHHhhc----CCCCceEEEEeCChHhcchHHHHhce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6778888774 33456777777888999999999998 699999999999999999988889889999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 011393 416 EGYSGSDLQALCEEAA 431 (487)
Q Consensus 416 ~G~s~~dL~~lv~~A~ 431 (487)
.| +.+++.++++..+
T Consensus 213 ~g-dlr~a~~~Lekl~ 227 (451)
T PRK06305 213 QG-SLRDAESLYDYVV 227 (451)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 76 5666666666544
No 87
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=5.8e-18 Score=180.73 Aligned_cols=194 Identities=18% Similarity=0.218 Sum_probs=148.9
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe--------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------- 276 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------- 276 (487)
.+..+|+|.+|+||+|++.+++.|+..+. .++.++.+|||||||+|||++|+++|+.+.+.
T Consensus 5 ~l~~kyRP~~f~diiGqe~iv~~L~~~i~-----------~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC 73 (563)
T PRK06647 5 GTATKRRPRDFNSLEGQDFVVETLKHSIE-----------SNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPC 73 (563)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCC
Confidence 35678999999999999999999999884 23445679999999999999999999997652
Q ss_pred ----------------EEEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 277 ----------------FFNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 277 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
++.+++.. ...-..++.+.+.+. .....|++|||+|.| .....
T Consensus 74 ~~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-----------s~~a~ 136 (563)
T PRK06647 74 GECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-----------SNSAF 136 (563)
T ss_pred ccchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-----------CHHHH
Confidence 22222211 011233444443332 234569999999988 23456
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.|+..++. ++..+++|++|+.+..+.+++++||. .+.|..++.++...+++..+...++.++++.+..|+..+.
T Consensus 137 naLLK~LEe----pp~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~ 211 (563)
T PRK06647 137 NALLKTIEE----PPPYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKST 211 (563)
T ss_pred HHHHHhhcc----CCCCEEEEEecCChHHhHHHHHHhce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 778887773 44557777777878999999999998 6899999999999999999988899999999999999988
Q ss_pred CCCHHHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAAM 432 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~ 432 (487)
| +.+++..+++.++.
T Consensus 212 G-dlR~alslLdklis 226 (563)
T PRK06647 212 G-SVRDAYTLFDQVVS 226 (563)
T ss_pred C-CHHHHHHHHHHHHh
Confidence 7 77888888776643
No 88
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.78 E-value=1e-17 Score=187.17 Aligned_cols=210 Identities=19% Similarity=0.246 Sum_probs=157.9
Q ss_pred hhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc--------
Q 011393 202 INTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-------- 273 (487)
Q Consensus 202 ~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-------- 273 (487)
....+.++.++-++++++|.++.++.+.+.+. ++...+++|+||||||||++|+.+|..+
T Consensus 173 ~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~ 240 (852)
T TIGR03345 173 YTTDLTAQAREGKIDPVLGRDDEIRQMIDILL------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPA 240 (852)
T ss_pred HhhhHHHHhcCCCCCcccCCHHHHHHHHHHHh------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCcc
Confidence 34566777788999999999998877777652 2234589999999999999999999985
Q ss_pred --CCeEEEEecCccc--hhccchhHHHHHHHHHHHHh-cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC
Q 011393 274 --QATFFNVSASSLT--SKWVGEGEKLVRTLFMVAIS-RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS 348 (487)
Q Consensus 274 --~~~~~~v~~~~l~--~~~~g~~~~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 348 (487)
+.+++.++.+.+. ..+.|+.+..++.++..+.. ..++||||||+|.|.+.+...... ...+.|+..+.
T Consensus 241 l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~---d~~n~Lkp~l~---- 313 (852)
T TIGR03345 241 LRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQG---DAANLLKPALA---- 313 (852)
T ss_pred ccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccc---cHHHHhhHHhh----
Confidence 3567888887765 36889999999999998864 467899999999998765321111 11122333332
Q ss_pred CCCCcEEEEEecCCC-----CCCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc----CCCCCChhhHHHHHHHcCCCC
Q 011393 349 NPNDLVIVMGATNKP-----QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----QAFSLPGGDLERLVRETEGYS 419 (487)
Q Consensus 349 ~~~~~vivI~ttn~~-----~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~----~~~~l~~~~l~~La~~t~G~s 419 (487)
.+.+.+||||+.. ..+|++|.|||. .|.++.|+.++...||+.+... +++.++++.+..++..+.+|.
T Consensus 314 --~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 314 --RGELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred --CCCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 3448899988753 458999999997 7999999999999997655532 567789999999999998875
Q ss_pred H-----HHHHHHHHHHHHH
Q 011393 420 G-----SDLQALCEEAAMM 433 (487)
Q Consensus 420 ~-----~dL~~lv~~A~~~ 433 (487)
. .---.|+.+|+..
T Consensus 391 ~~r~LPDKAIdlldea~a~ 409 (852)
T TIGR03345 391 PGRQLPDKAVSLLDTACAR 409 (852)
T ss_pred ccccCccHHHHHHHHHHHH
Confidence 3 3444566666543
No 89
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.78 E-value=7.5e-18 Score=169.43 Aligned_cols=185 Identities=17% Similarity=0.156 Sum_probs=135.3
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~ 284 (487)
.|+++|+|.+|++++|++.+++.|..++. .+..+..+||+||||+|||++|++++++.+.+++.+++.+
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 68999999999999999999999998884 2233456777999999999999999999999999999876
Q ss_pred cchhccchhHHHHHHHHHHHH-hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 011393 285 LTSKWVGEGEKLVRTLFMVAI-SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 363 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~ 363 (487)
.. .......+..+..... ...+.||+|||+|.+.. ......+...++.. ...+.+|+++|.+
T Consensus 79 --~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~L~~~le~~----~~~~~~Ilt~n~~ 141 (316)
T PHA02544 79 --CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRHLRSFMEAY----SKNCSFIITANNK 141 (316)
T ss_pred --cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHHHHHHHHhc----CCCceEEEEcCCh
Confidence 22 2221222222222111 13568999999998721 11223344445432 2336777889999
Q ss_pred CCCCHHHHcccccEEEccCCCHHHHHHHHHHH-------hccCCCCCChhhHHHHHHHcCCC
Q 011393 364 QELDDAVLRRLVKRIYVPLPDENVRRLLLKHK-------LKGQAFSLPGGDLERLVRETEGY 418 (487)
Q Consensus 364 ~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~-------l~~~~~~l~~~~l~~La~~t~G~ 418 (487)
..+.+++++||. .+.++.|+.+++..++..+ +...++.++++.+..++....|-
T Consensus 142 ~~l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d 202 (316)
T PHA02544 142 NGIIEPLRSRCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPD 202 (316)
T ss_pred hhchHHHHhhce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC
Confidence 999999999997 6899999999988776543 34567788888999999887763
No 90
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=1e-17 Score=179.56 Aligned_cols=200 Identities=20% Similarity=0.193 Sum_probs=151.0
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe---
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS--- 281 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~--- 281 (487)
.+.++|+|.+|+||+|++.+++.|..++. ..+.++++||+||+|+|||++|+++|+.+.+.....+
T Consensus 13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~-----------~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~ 81 (598)
T PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFE-----------TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGP 81 (598)
T ss_pred hHHhhhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCC
Confidence 36678999999999999999999999884 3345678999999999999999999999876432111
Q ss_pred ----cC--------------ccchhc--cchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHHH
Q 011393 282 ----AS--------------SLTSKW--VGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLKS 337 (487)
Q Consensus 282 ----~~--------------~l~~~~--~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~ 337 (487)
|. ++..-. ...+-..++.+++.+.. ....|+||||+|.| .....+
T Consensus 82 ~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L-----------s~~a~n 150 (598)
T PRK09111 82 TIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML-----------STAAFN 150 (598)
T ss_pred ccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC-----------CHHHHH
Confidence 10 000000 00123446666655532 23469999999998 234567
Q ss_pred HHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCC
Q 011393 338 EFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEG 417 (487)
Q Consensus 338 ~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G 417 (487)
.|+..|+. +...+++|.+|+.+..+.+.+++||. .+.|..++.++...++...+.+.++.++++.++.|+..+.|
T Consensus 151 aLLKtLEe----Pp~~~~fIl~tte~~kll~tI~SRcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G 225 (598)
T PRK09111 151 ALLKTLEE----PPPHVKFIFATTEIRKVPVTVLSRCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG 225 (598)
T ss_pred HHHHHHHh----CCCCeEEEEEeCChhhhhHHHHhhee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 78888874 34446676677778889999999997 69999999999999999999999999999999999999987
Q ss_pred CCHHHHHHHHHHHHH
Q 011393 418 YSGSDLQALCEEAAM 432 (487)
Q Consensus 418 ~s~~dL~~lv~~A~~ 432 (487)
+.+++.++++.++.
T Consensus 226 -dlr~al~~Ldkli~ 239 (598)
T PRK09111 226 -SVRDGLSLLDQAIA 239 (598)
T ss_pred -CHHHHHHHHHHHHh
Confidence 67888887776643
No 91
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=1.6e-17 Score=170.62 Aligned_cols=201 Identities=16% Similarity=0.198 Sum_probs=146.5
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~ 284 (487)
.|.++|+|.+|+|++|++.+++.|...+. .+..++++|||||||+|||++|+++|+.+.+......+..
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~-----------~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~ 74 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIE-----------NNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNED 74 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 36788999999999999999999999884 2344578999999999999999999998765221110000
Q ss_pred c------chhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcE
Q 011393 285 L------TSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLV 354 (487)
Q Consensus 285 l------~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 354 (487)
+ ...........++.+++.+.. ..+.||+|||+|.+. ....+.|+..++. +....
T Consensus 75 ~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-----------~~~~~~ll~~le~----~~~~~ 139 (367)
T PRK14970 75 FSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-----------SAAFNAFLKTLEE----PPAHA 139 (367)
T ss_pred CCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-----------HHHHHHHHHHHhC----CCCce
Confidence 0 000011123455666665432 234699999999883 2335667776664 23335
Q ss_pred EEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 011393 355 IVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMM 433 (487)
Q Consensus 355 ivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~ 433 (487)
++|.+++.+..+.+++.+|+. .+.++.|+.++...++...+.+.++.++++.++.|+..+.| +.+.+.+.++..+..
T Consensus 140 ~~Il~~~~~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y 216 (367)
T PRK14970 140 IFILATTEKHKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTF 216 (367)
T ss_pred EEEEEeCCcccCCHHHHhcce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 666667778899999999997 68999999999999999999999999999999999999876 677777777765543
No 92
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.77 E-value=3e-17 Score=172.74 Aligned_cols=220 Identities=21% Similarity=0.327 Sum_probs=151.1
Q ss_pred CCCCccccc-Ch--HHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEEEec
Q 011393 211 PSVKWEDVA-GL--EKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSA 282 (487)
Q Consensus 211 ~~~~~~di~-G~--~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~v~~ 282 (487)
|..+|++++ |. ..+...+..+...+ .....+++||||||||||+|++++++++ +..++++++
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHhCc----------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 456788844 53 33555555554321 1234579999999999999999999986 667899999
Q ss_pred CccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 011393 283 SSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 362 (487)
Q Consensus 283 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~ 362 (487)
.++...+..........-|... ...+.+|+|||+|.+.+.. ....+|+..++.+.... ..+||+++..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~-~~~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~l~~~~--~~iiits~~~ 254 (450)
T PRK00149 187 EKFTNDFVNALRNNTMEEFKEK-YRSVDVLLIDDIQFLAGKE---------RTQEEFFHTFNALHEAG--KQIVLTSDRP 254 (450)
T ss_pred HHHHHHHHHHHHcCcHHHHHHH-HhcCCEEEEehhhhhcCCH---------HHHHHHHHHHHHHHHCC--CcEEEECCCC
Confidence 8876655433322111222222 2257899999999985431 12334444444333221 2466666666
Q ss_pred CCC---CCHHHHcccc--cEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHh
Q 011393 363 PQE---LDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 363 ~~~---ld~al~~Rf~--~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~ 437 (487)
|.. +++.+++||. ..+.+..|+.++|..|++..+...++.++++.++.||..+.| +.++|..++......+...
T Consensus 255 p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~ 333 (450)
T PRK00149 255 PKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT 333 (450)
T ss_pred HHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh
Confidence 655 6789999996 578999999999999999999988899999999999999987 7888887777665544221
Q ss_pred hccchhccccccCCCCcHHHHHHHHHhh
Q 011393 438 LGTNILTVKANQLRPLRYEDFQKAMAVI 465 (487)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~~df~~al~~~ 465 (487)
.++|+.+.+.+++..+
T Consensus 334 ------------~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 334 ------------GKPITLELAKEALKDL 349 (450)
T ss_pred ------------CCCCCHHHHHHHHHHh
Confidence 1446777777777654
No 93
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.77 E-value=3.3e-17 Score=170.25 Aligned_cols=218 Identities=22% Similarity=0.346 Sum_probs=146.4
Q ss_pred CCCCccc-ccChHH--HHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEEEec
Q 011393 211 PSVKWED-VAGLEK--AKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSA 282 (487)
Q Consensus 211 ~~~~~~d-i~G~~~--~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~v~~ 282 (487)
+..+|++ ++|... +...+.++...+ .....+++||||+|+|||+|++++++++ +..++++++
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHHHhCc----------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 4567888 556443 344444444321 1234579999999999999999999986 678899998
Q ss_pred CccchhccchhHH-HHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 011393 283 SSLTSKWVGEGEK-LVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 361 (487)
Q Consensus 283 ~~l~~~~~g~~~~-~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn 361 (487)
.++...+...... .+..+.... ..+.+|+|||+|.+.+.. ....+|+..++..... +..+||+++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~~~~~--~~~iiits~~ 241 (405)
T TIGR00362 175 EKFTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFLAGKE---------RTQEEFFHTFNALHEN--GKQIVLTSDR 241 (405)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhhcCCH---------HHHHHHHHHHHHHHHC--CCCEEEecCC
Confidence 8776544332211 112222222 246799999999985431 1223444444433222 1245666666
Q ss_pred CCCC---CCHHHHcccc--cEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Q 011393 362 KPQE---LDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIR 436 (487)
Q Consensus 362 ~~~~---ld~al~~Rf~--~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~ 436 (487)
.|.. +++.+++||. ..+.++.|+.++|..|++..+...++.++++.++.||....+ +.++|..++......+..
T Consensus 242 ~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~ 320 (405)
T TIGR00362 242 PPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASL 320 (405)
T ss_pred CHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 6654 5688999996 479999999999999999999999999999999999999876 788888888776555432
Q ss_pred hhccchhccccccCCCCcHHHHHHHHHh
Q 011393 437 ELGTNILTVKANQLRPLRYEDFQKAMAV 464 (487)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~~~df~~al~~ 464 (487)
. .++||.+.+.+++..
T Consensus 321 ~------------~~~it~~~~~~~L~~ 336 (405)
T TIGR00362 321 T------------GKPITLELAKEALKD 336 (405)
T ss_pred h------------CCCCCHHHHHHHHHH
Confidence 1 134555555555554
No 94
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.77 E-value=2.2e-18 Score=179.30 Aligned_cols=202 Identities=22% Similarity=0.267 Sum_probs=160.9
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeE--EEEec
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATF--FNVSA 282 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~--~~v~~ 282 (487)
.+..+|+|.+|+|++|++.+...|...+. ..+..++.||+||.|||||++||.+|+.++|.- ..-.|
T Consensus 5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~-----------~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC 73 (515)
T COG2812 5 VLARKYRPKTFDDVVGQEHVVKTLSNALE-----------NGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPC 73 (515)
T ss_pred HHHHHhCcccHHHhcccHHHHHHHHHHHH-----------hCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcc
Confidence 35678999999999999999999999995 445567899999999999999999999987652 10011
Q ss_pred Ccc------chh----------ccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHH
Q 011393 283 SSL------TSK----------WVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQ 342 (487)
Q Consensus 283 ~~l------~~~----------~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~ 342 (487)
..+ ... --..+-..++.+.+.+. ..+..|++|||+|.| +....+.||..
T Consensus 74 ~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~~afNALLKT 142 (515)
T COG2812 74 GKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SKQAFNALLKT 142 (515)
T ss_pred hhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hHHHHHHHhcc
Confidence 111 000 00112345556655552 234469999999998 56788999988
Q ss_pred hcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHH
Q 011393 343 FDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSD 422 (487)
Q Consensus 343 l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~d 422 (487)
++ .++.+|++|.+|..++.++..+++||. ++.|...+.++....+..++.+.++..++..+..+++..+| +.+|
T Consensus 143 LE----EPP~hV~FIlATTe~~Kip~TIlSRcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RD 216 (515)
T COG2812 143 LE----EPPSHVKFILATTEPQKIPNTILSRCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRD 216 (515)
T ss_pred cc----cCccCeEEEEecCCcCcCchhhhhccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chhh
Confidence 87 567779999999999999999999998 58888899999999999999999999999999999999998 7889
Q ss_pred HHHHHHHHHHHh
Q 011393 423 LQALCEEAAMMP 434 (487)
Q Consensus 423 L~~lv~~A~~~a 434 (487)
...++..|....
T Consensus 217 alslLDq~i~~~ 228 (515)
T COG2812 217 ALSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHHcc
Confidence 999988886654
No 95
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.77 E-value=1.9e-17 Score=166.42 Aligned_cols=194 Identities=20% Similarity=0.237 Sum_probs=139.8
Q ss_pred hccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC-----CeEE
Q 011393 204 TAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-----ATFF 278 (487)
Q Consensus 204 ~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~-----~~~~ 278 (487)
..|+++|+|.+|+|++|++.+++.|..++.. ....+++||||||||||++++++++++. ..++
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i 72 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKE------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFL 72 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceE
Confidence 4699999999999999999999999988841 1123689999999999999999999863 3455
Q ss_pred EEecCccchhccchhHHHHHHHH-HHHHh-----cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCC
Q 011393 279 NVSASSLTSKWVGEGEKLVRTLF-MVAIS-----RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPND 352 (487)
Q Consensus 279 ~v~~~~l~~~~~g~~~~~i~~~f-~~a~~-----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 352 (487)
.+++++... ...++..+ ..+.. ..+.+|+|||+|.+.. .....|+..++... .
T Consensus 73 ~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----------~~~~~L~~~le~~~----~ 131 (319)
T PRK00440 73 ELNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----------DAQQALRRTMEMYS----Q 131 (319)
T ss_pred Eeccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----------HHHHHHHHHHhcCC----C
Confidence 555443221 11121211 22211 2346999999998832 22345555555432 2
Q ss_pred cEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 011393 353 LVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAM 432 (487)
Q Consensus 353 ~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~ 432 (487)
.+.+|.++|.+..+.+++.+|+. .+.++.++.++...++..++.+.++.+++..++.|+..+.| +.+.+.+.++.++.
T Consensus 132 ~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~ 209 (319)
T PRK00440 132 NTRFILSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAA 209 (319)
T ss_pred CCeEEEEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 24556667778888888999988 58999999999999999999999999999999999999876 45555555555443
No 96
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1e-16 Score=167.36 Aligned_cols=216 Identities=22% Similarity=0.321 Sum_probs=154.5
Q ss_pred cccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch-------
Q 011393 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS------- 287 (487)
Q Consensus 215 ~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~------- 287 (487)
=+|-.|++++|+++.+++..-..+. ...++-++|+||||+|||+++++||..+|..|+.++...+..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrg------s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRG------SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcc------cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 3578999999999999986432221 223456899999999999999999999999999999866543
Q ss_pred --hccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHH-----HHHHHHhcCCCCCCCCcEEEEEec
Q 011393 288 --KWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLK-----SEFLIQFDGVTSNPNDLVIVMGAT 360 (487)
Q Consensus 288 --~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~-----~~ll~~l~~~~~~~~~~vivI~tt 360 (487)
.|+|.....+-+.+......+| +++|||||.+...-.++...+..+++ ..|+...-.+.- .-..|++|||+
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~-DLSkVLFicTA 561 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPV-DLSKVLFICTA 561 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhcccccc-chhheEEEEec
Confidence 3888887777777777766777 89999999997433222222211111 111111111111 12369999999
Q ss_pred CCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhc-----c-----CCCCCChhhHHHHHHHcCCCCH-----HHHHH
Q 011393 361 NKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK-----G-----QAFSLPGGDLERLVRETEGYSG-----SDLQA 425 (487)
Q Consensus 361 n~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~-----~-----~~~~l~~~~l~~La~~t~G~s~-----~dL~~ 425 (487)
|..+.|+++|++|+. .|.++-+..++...|.+.||- . ..+.+++..+..|.+....-+| ..|..
T Consensus 562 N~idtIP~pLlDRME-vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iek 640 (906)
T KOG2004|consen 562 NVIDTIPPPLLDRME-VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEK 640 (906)
T ss_pred cccccCChhhhhhhh-eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999998 799999999999999998873 2 2345677777777666433222 47788
Q ss_pred HHHHHHHHhHHhhc
Q 011393 426 LCEEAAMMPIRELG 439 (487)
Q Consensus 426 lv~~A~~~a~~~~~ 439 (487)
+|+.++..-.+...
T Consensus 641 I~Rk~Al~vv~~~~ 654 (906)
T KOG2004|consen 641 ICRKVALKVVEGEN 654 (906)
T ss_pred HHHHHHHHHHHhhc
Confidence 89988888777653
No 97
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.77 E-value=2.3e-17 Score=180.34 Aligned_cols=190 Identities=24% Similarity=0.317 Sum_probs=140.8
Q ss_pred ccccCCCCCCcccccChHHHHH---HHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQ---ALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~---~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
.|.++++|.+|+|++|++.+.. .|..++. . ....+++||||||||||++|+++|+..+.+|+.++
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~-----------~-~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIK-----------A-DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHh-----------c-CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 5777889999999999999884 5655553 1 12357999999999999999999999999998888
Q ss_pred cCccchhccchhHHHHHHHHHHH-----HhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 011393 282 ASSLTSKWVGEGEKLVRTLFMVA-----ISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIV 356 (487)
Q Consensus 282 ~~~l~~~~~g~~~~~i~~~f~~a-----~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~viv 356 (487)
+.... .+.++..+..+ ......+|||||+|.|. ...+..|+..++. ..+++
T Consensus 85 a~~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----------~~qQdaLL~~lE~------g~IiL 140 (725)
T PRK13341 85 AVLAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----------KAQQDALLPWVEN------GTITL 140 (725)
T ss_pred hhhhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----------HHHHHHHHHHhcC------ceEEE
Confidence 75321 11223333322 12345799999999982 2234455655542 33666
Q ss_pred EEec--CCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhc-------cCCCCCChhhHHHHHHHcCCCCHHHHHHHH
Q 011393 357 MGAT--NKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK-------GQAFSLPGGDLERLVRETEGYSGSDLQALC 427 (487)
Q Consensus 357 I~tt--n~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~-------~~~~~l~~~~l~~La~~t~G~s~~dL~~lv 427 (487)
|++| |....+++++++|+. .+.++.++.++...+++..+. ..++.++++.++.|+..+.| +.+.+.+++
T Consensus 141 I~aTTenp~~~l~~aL~SR~~-v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~L 218 (725)
T PRK13341 141 IGATTENPYFEVNKALVSRSR-LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNAL 218 (725)
T ss_pred EEecCCChHhhhhhHhhcccc-ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHH
Confidence 6655 333568999999986 689999999999999999887 45678899999999999866 677888888
Q ss_pred HHHHH
Q 011393 428 EEAAM 432 (487)
Q Consensus 428 ~~A~~ 432 (487)
+.++.
T Consensus 219 e~a~~ 223 (725)
T PRK13341 219 ELAVE 223 (725)
T ss_pred HHHHH
Confidence 87664
No 98
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.4e-17 Score=172.11 Aligned_cols=200 Identities=18% Similarity=0.212 Sum_probs=143.9
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEE------
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFN------ 279 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~------ 279 (487)
+.++|+|.+|++|+|++.+++.|..++. .++.++++|||||||+|||++|+++|+.+.+.-..
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 5678999999999999999999988884 23445679999999999999999999998763100
Q ss_pred ----EecCccch-------------hccc---hhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHH
Q 011393 280 ----VSASSLTS-------------KWVG---EGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRL 335 (487)
Q Consensus 280 ----v~~~~l~~-------------~~~g---~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~ 335 (487)
-.|....+ .+.+ ..-..++.+.+.+. .....|+||||+|.|. ...
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-----------~~~ 143 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-----------IAA 143 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------HHH
Confidence 01111000 0001 11234555544442 1233599999999982 234
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHc
Q 011393 336 KSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRET 415 (487)
Q Consensus 336 ~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t 415 (487)
.+.|+..++. +...+++|.+|+.+..+.+++++|+. .+.+..++.++....+...+...++.++++.++.|+..+
T Consensus 144 ~~~LLk~LEe----p~~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 144 FNAFLKTLEE----PPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHHHHHhc----CCCCeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 5567777763 33345566666677889999999997 689999999999999999998888889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 011393 416 EGYSGSDLQALCEEAAMM 433 (487)
Q Consensus 416 ~G~s~~dL~~lv~~A~~~ 433 (487)
.| +.+.+...++.+...
T Consensus 219 ~g-~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 219 QG-SMRDAQSILDQVIAF 235 (397)
T ss_pred CC-CHHHHHHHHHHHHHh
Confidence 77 677777777765443
No 99
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.76 E-value=1.3e-17 Score=161.90 Aligned_cols=221 Identities=23% Similarity=0.329 Sum_probs=150.6
Q ss_pred ccccCCCCCCcccccChHHHHHH---HHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe---EE
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQA---LMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT---FF 278 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~---L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~---~~ 278 (487)
.+.++.+|.+++|.+|++++... |..++. . ..-..++||||||||||+||+.|+.-...+ |+
T Consensus 127 PLaermRPktL~dyvGQ~hlv~q~gllrs~ie-----------q-~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfv 194 (554)
T KOG2028|consen 127 PLAERMRPKTLDDYVGQSHLVGQDGLLRSLIE-----------Q-NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFV 194 (554)
T ss_pred ChhhhcCcchHHHhcchhhhcCcchHHHHHHH-----------c-CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEE
Confidence 56677889999999999887544 222221 1 123479999999999999999999987655 77
Q ss_pred EEecCccchhccchhHHHHHHHHHHHHh-----cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCc
Q 011393 279 NVSASSLTSKWVGEGEKLVRTLFMVAIS-----RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDL 353 (487)
Q Consensus 279 ~v~~~~l~~~~~g~~~~~i~~~f~~a~~-----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 353 (487)
++++..- ....++.+|+.++. ....|||||||+.+- +..+..||-.++ .+.
T Consensus 195 elSAt~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN-----------ksQQD~fLP~VE------~G~ 250 (554)
T KOG2028|consen 195 ELSATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN-----------KSQQDTFLPHVE------NGD 250 (554)
T ss_pred EEecccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh-----------hhhhhcccceec------cCc
Confidence 7776543 23467788887754 355799999999982 233445554443 344
Q ss_pred EEEEEec--CCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhc------c----CC---CCCChhhHHHHHHHcCCC
Q 011393 354 VIVMGAT--NKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK------G----QA---FSLPGGDLERLVRETEGY 418 (487)
Q Consensus 354 vivI~tt--n~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~------~----~~---~~l~~~~l~~La~~t~G~ 418 (487)
|++||+| |....|+.++++||. ++.+.....+....||.+... + .+ +.+++-.++.|+..++|.
T Consensus 251 I~lIGATTENPSFqln~aLlSRC~-VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGD 329 (554)
T KOG2028|consen 251 ITLIGATTENPSFQLNAALLSRCR-VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGD 329 (554)
T ss_pred eEEEecccCCCccchhHHHHhccc-eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCch
Confidence 8888876 666789999999998 466666677777777776332 1 11 124566799999999998
Q ss_pred CHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhCCCCC
Q 011393 419 SGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLN 470 (487)
Q Consensus 419 s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ps~s 470 (487)
....|.+|--.+.+...|.-+ .....|+.+|+.+.+..-.--+.
T Consensus 330 aR~aLN~Lems~~m~~tr~g~--------~~~~~lSidDvke~lq~s~~~YD 373 (554)
T KOG2028|consen 330 ARAALNALEMSLSMFCTRSGQ--------SSRVLLSIDDVKEGLQRSHILYD 373 (554)
T ss_pred HHHHHHHHHHHHHHHHhhcCC--------cccceecHHHHHHHHhhccceec
Confidence 887777664433333333211 12346889999999876544333
No 100
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.6e-17 Score=174.28 Aligned_cols=232 Identities=20% Similarity=0.293 Sum_probs=160.7
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch--------
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-------- 287 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~-------- 287 (487)
.|-.|++++|+++.+++........ ..+.-+||+||||+|||+|++.||+.++..|+.++...+..
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 4689999999999999864433321 22346889999999999999999999999999999876543
Q ss_pred -hccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHH--HHHHHhcCCCCCC--CCcEEEEEecCC
Q 011393 288 -KWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKS--EFLIQFDGVTSNP--NDLVIVMGATNK 362 (487)
Q Consensus 288 -~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~--~ll~~l~~~~~~~--~~~vivI~ttn~ 362 (487)
.|+|.....+-+-+..|...+| +++|||||.+...-.++...+..+++. |=-...|.....+ -..|++|+|+|.
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANs 475 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANS 475 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCc
Confidence 3888888888888888877777 999999999976543333332222211 0000111111111 235999999999
Q ss_pred CCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhc-----cC-----CCCCChhhHHHHHHHcCCCCH-----HHHHHHH
Q 011393 363 PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK-----GQ-----AFSLPGGDLERLVRETEGYSG-----SDLQALC 427 (487)
Q Consensus 363 ~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~-----~~-----~~~l~~~~l~~La~~t~G~s~-----~dL~~lv 427 (487)
.+.++.+|++|+. .|.++-++.++..+|.+.||- .+ .+.++++.+..|.+....-+| +.|..+|
T Consensus 476 l~tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~ 554 (782)
T COG0466 476 LDTIPAPLLDRME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKIC 554 (782)
T ss_pred cccCChHHhccee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHH
Confidence 9999999999998 799999999999999988772 23 345678888888776432222 4566666
Q ss_pred HHHHHHhHHhhccchhccccccCCCCcHHHHHHHHH
Q 011393 428 EEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMA 463 (487)
Q Consensus 428 ~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~ 463 (487)
+.++..-+..-.. ....++..++.+-+.
T Consensus 555 RK~~~~i~~~~~k--------~~~~i~~~~l~~yLG 582 (782)
T COG0466 555 RKAAKKILLKKEK--------SIVKIDEKNLKKYLG 582 (782)
T ss_pred HHHHHHHHhcCcc--------cceeeCHHHHHHHhC
Confidence 6665544332111 112356666766665
No 101
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.76 E-value=2.4e-17 Score=180.92 Aligned_cols=238 Identities=19% Similarity=0.239 Sum_probs=171.1
Q ss_pred HhhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-------
Q 011393 201 MINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES------- 273 (487)
Q Consensus 201 ~~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~------- 273 (487)
.....+.+....-.++.++|.+..++.+.+.+.. ....++||+||||||||++|+++|...
T Consensus 171 ~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~ 238 (758)
T PRK11034 171 NFTTNLNQLARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPE 238 (758)
T ss_pred HHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 3344555555667889999999999999887731 234678999999999999999999873
Q ss_pred ---CCeEEEEecCccc--hhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC
Q 011393 274 ---QATFFNVSASSLT--SKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS 348 (487)
Q Consensus 274 ---~~~~~~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 348 (487)
++.++.++...+. ..|.|+.+..++.++..+....++||||||||.|++.+...... ..+.+.|...+.
T Consensus 239 ~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~--~d~~nlLkp~L~---- 312 (758)
T PRK11034 239 VMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VDAANLIKPLLS---- 312 (758)
T ss_pred hhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcH--HHHHHHHHHHHh----
Confidence 5667777666655 46788899999999998877788999999999998765422111 122222222222
Q ss_pred CCCCcEEEEEecCCCC-----CCCHHHHcccccEEEccCCCHHHHHHHHHHHhc----cCCCCCChhhHHHHHHHcCC--
Q 011393 349 NPNDLVIVMGATNKPQ-----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK----GQAFSLPGGDLERLVRETEG-- 417 (487)
Q Consensus 349 ~~~~~vivI~ttn~~~-----~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~----~~~~~l~~~~l~~La~~t~G-- 417 (487)
.+.+.||++|+.++ ..|++|.|||. .|.++.|+.+++..|++.+.. .+++.+++..+..++..+..
T Consensus 313 --~g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi 389 (758)
T PRK11034 313 --SGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_pred --CCCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccc
Confidence 34488999998754 57999999997 799999999999999997553 46778889988887776654
Q ss_pred ---CCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhC
Q 011393 418 ---YSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 418 ---~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ 466 (487)
+.|...-.++.+|+... ++... ......++.+|+.+.+....
T Consensus 390 ~~r~lPdKaidlldea~a~~--~~~~~-----~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 390 NDRHLPDKAIDVIDEAGARA--RLMPV-----SKRKKTVNVADIESVVARIA 434 (758)
T ss_pred cCccChHHHHHHHHHHHHhh--ccCcc-----cccccccChhhHHHHHHHHh
Confidence 34567778888887543 11110 00113477778877766544
No 102
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=5.7e-17 Score=174.13 Aligned_cols=200 Identities=17% Similarity=0.226 Sum_probs=144.9
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEE------
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFN------ 279 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~------ 279 (487)
+.++|+|.+|++|+|++.+++.|+.++. .++-++++||+||+|||||++|+++|+.+.+.-..
T Consensus 6 l~~kyRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14954 6 IARKYRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYL 74 (620)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccc
Confidence 4578999999999999999999998874 33445679999999999999999999998773100
Q ss_pred ----EecCccc-----------h--hccc---hhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHH
Q 011393 280 ----VSASSLT-----------S--KWVG---EGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRL 335 (487)
Q Consensus 280 ----v~~~~l~-----------~--~~~g---~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~ 335 (487)
-.|.... . .+.+ ..-..++.+.+... .....|++|||+|.|. ...
T Consensus 75 ~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt-----------~~a 143 (620)
T PRK14954 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS-----------TAA 143 (620)
T ss_pred cccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-----------HHH
Confidence 0111100 0 0011 11234555544442 2334699999999982 334
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHc
Q 011393 336 KSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRET 415 (487)
Q Consensus 336 ~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t 415 (487)
.+.|+..|+. +...+++|.+|+.+..|.+++++|+. .+.|..++.++....+...+...++.++++.++.|+..+
T Consensus 144 ~naLLK~LEe----Pp~~tv~IL~t~~~~kLl~TI~SRc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s 218 (620)
T PRK14954 144 FNAFLKTLEE----PPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKA 218 (620)
T ss_pred HHHHHHHHhC----CCCCeEEEEEeCChhhhhHHHHhhce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 6678888774 33446666666777899999999997 799999999999989999898888889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 011393 416 EGYSGSDLQALCEEAAMM 433 (487)
Q Consensus 416 ~G~s~~dL~~lv~~A~~~ 433 (487)
.| +.+++...++..+..
T Consensus 219 ~G-dlr~al~eLeKL~~y 235 (620)
T PRK14954 219 QG-SMRDAQSILDQVIAF 235 (620)
T ss_pred CC-CHHHHHHHHHHHHHh
Confidence 87 566666666654433
No 103
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=6.1e-17 Score=174.79 Aligned_cols=192 Identities=20% Similarity=0.259 Sum_probs=147.5
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe--------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------- 276 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------- 276 (487)
.|.++|++.+|++++|++.+++.|..++.. .+..+++||+||+|+|||++|+++|+.+++.
T Consensus 5 pl~~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~ 73 (620)
T PRK14948 5 PLHHKYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE 73 (620)
T ss_pred hHHHHhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC
Confidence 466789999999999999999999998852 2334689999999999999999999998763
Q ss_pred ------------------EEEEecCccchhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHH
Q 011393 277 ------------------FFNVSASSLTSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRR 334 (487)
Q Consensus 277 ------------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~ 334 (487)
++.++.. ....-..++.++..+.. ....||||||+|.| ...
T Consensus 74 ~Cg~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-----------t~~ 136 (620)
T PRK14948 74 PCGKCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-----------STA 136 (620)
T ss_pred CCcccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-----------CHH
Confidence 2222211 11234566777766532 23469999999988 235
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHH
Q 011393 335 LKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRE 414 (487)
Q Consensus 335 ~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~ 414 (487)
..+.||..|+. +...+++|++|+.+..+.+++++||. .+.|..++.++....+...+.+.++.+++..+..|++.
T Consensus 137 a~naLLK~LEe----Pp~~tvfIL~t~~~~~llpTIrSRc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~ 211 (620)
T PRK14948 137 AFNALLKTLEE----PPPRVVFVLATTDPQRVLPTIISRCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQR 211 (620)
T ss_pred HHHHHHHHHhc----CCcCeEEEEEeCChhhhhHHHHhhee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 66788888883 34457777778888899999999997 68898898888888888888888888889999999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 011393 415 TEGYSGSDLQALCEEA 430 (487)
Q Consensus 415 t~G~s~~dL~~lv~~A 430 (487)
+.| +.+++..+++..
T Consensus 212 s~G-~lr~A~~lLekl 226 (620)
T PRK14948 212 SQG-GLRDAESLLDQL 226 (620)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 987 456666666543
No 104
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.75 E-value=2.8e-17 Score=184.07 Aligned_cols=196 Identities=18% Similarity=0.298 Sum_probs=148.3
Q ss_pred hhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc--------
Q 011393 202 INTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-------- 273 (487)
Q Consensus 202 ~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-------- 273 (487)
....+.++.++-.+++++|.+..++.+.+.+. ++...+++|+||||||||++|+++|..+
T Consensus 164 ~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~ 231 (857)
T PRK10865 164 YTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQ------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG 231 (857)
T ss_pred HhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHh------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchh
Confidence 34456667778899999999998888877663 2334679999999999999999999987
Q ss_pred --CCeEEEEecCccc--hhccchhHHHHHHHHHHHH-hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC
Q 011393 274 --QATFFNVSASSLT--SKWVGEGEKLVRTLFMVAI-SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS 348 (487)
Q Consensus 274 --~~~~~~v~~~~l~--~~~~g~~~~~i~~~f~~a~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 348 (487)
+.+++.++...+. .+|.|+.+..++.+|.... ...++||||||+|.|.+....... ....+.|...+.
T Consensus 232 l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~---~d~~~~lkp~l~---- 304 (857)
T PRK10865 232 LKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPALA---- 304 (857)
T ss_pred hCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc---hhHHHHhcchhh----
Confidence 7889999888765 5688999999999998754 457899999999999876532211 112222322222
Q ss_pred CCCCcEEEEEecCCCC-----CCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc----CCCCCChhhHHHHHHHcCCCC
Q 011393 349 NPNDLVIVMGATNKPQ-----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----QAFSLPGGDLERLVRETEGYS 419 (487)
Q Consensus 349 ~~~~~vivI~ttn~~~-----~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~----~~~~l~~~~l~~La~~t~G~s 419 (487)
.+.+.+||+|+..+ .+|+++.|||+ .|.++.|+.+++..|++.+... +++.+++..+...+..+.+|.
T Consensus 305 --~g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~ 381 (857)
T PRK10865 305 --RGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI 381 (857)
T ss_pred --cCCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc
Confidence 34588999888765 48999999998 5899999999999999876643 456667877777766665543
No 105
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.74 E-value=1.9e-16 Score=165.05 Aligned_cols=246 Identities=20% Similarity=0.272 Sum_probs=158.0
Q ss_pred CCCCCccccc-ChH--HHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC
Q 011393 210 SPSVKWEDVA-GLE--KAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (487)
Q Consensus 210 ~~~~~~~di~-G~~--~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~ 283 (487)
.|..+|++++ |.. .+...+.++...+.. ....+..+++||||+|+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~------~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ------GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc------ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 3567899865 533 233445544321110 011234679999999999999999999875 6888888887
Q ss_pred ccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 011393 284 SLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 363 (487)
Q Consensus 284 ~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~ 363 (487)
.+...+.......-...|... .....+|+|||++.+.+.. ..+.+|+..++.+... +..+|++++..|
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~-~~~~dvLiIDDiq~l~~k~---------~~qeelf~l~N~l~~~--~k~IIlts~~~p 246 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQF-YRNVDALFIEDIEVFSGKG---------ATQEEFFHTFNSLHTE--GKLIVISSTCAP 246 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHH-cccCCEEEEcchhhhcCCh---------hhHHHHHHHHHHHHHC--CCcEEEecCCCH
Confidence 665443322111111123322 2456799999999985421 1223333333322211 224566555555
Q ss_pred C---CCCHHHHcccc--cEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHH-HhHHh
Q 011393 364 Q---ELDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAM-MPIRE 437 (487)
Q Consensus 364 ~---~ld~al~~Rf~--~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~-~a~~~ 437 (487)
. .+++.+++||. ..+.+..|+.++|..|++..+...++.++++.++.|+....+ +.++|...+...+. .+...
T Consensus 247 ~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~ 325 (445)
T PRK12422 247 QDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKK 325 (445)
T ss_pred HHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHH
Confidence 4 45789999995 678899999999999999999999999999999999998876 56666666665542 23433
Q ss_pred hccchhccccccCCCCcHHHHHHHHHhh---CC--CCCHHHHHHHHHHHHHhCC
Q 011393 438 LGTNILTVKANQLRPLRYEDFQKAMAVI---RP--SLNKSKWEELEQWNREFGS 486 (487)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~~df~~al~~~---~p--s~s~~~i~~~~~w~~~~g~ 486 (487)
+. ..+|+.+++.++++.+ .+ .++.+.|. +.+.+.||-
T Consensus 326 ~~----------~~~i~~~~~~~~l~~~~~~~~~~~~t~~~I~--~~Va~~~~v 367 (445)
T PRK12422 326 LS----------HQLLYVDDIKALLHDVLEAAESVRLTPSKII--RAVAQYYGV 367 (445)
T ss_pred hh----------CCCCCHHHHHHHHHHhhhcccCCCCCHHHHH--HHHHHHhCC
Confidence 21 2468899999988865 22 35555554 456677763
No 106
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.74 E-value=7.4e-17 Score=180.85 Aligned_cols=209 Identities=22% Similarity=0.299 Sum_probs=158.0
Q ss_pred hhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc--------
Q 011393 202 INTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-------- 273 (487)
Q Consensus 202 ~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-------- 273 (487)
....+.+....-.|+.++|.+..++.+.+.+. ++...+++|+||||||||++|+.+|.+.
T Consensus 165 ~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~ 232 (821)
T CHL00095 165 FGTNLTKEAIDGNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDI 232 (821)
T ss_pred HHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh
Confidence 34556666667789999999999999998873 2345689999999999999999999985
Q ss_pred --CCeEEEEecCccc--hhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCC
Q 011393 274 --QATFFNVSASSLT--SKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN 349 (487)
Q Consensus 274 --~~~~~~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 349 (487)
+.+++.++.+.+. .+|.|+.+..++.++..+....++||||||+|.|++........ .+.+.|...+.
T Consensus 233 l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~---~~a~lLkp~l~----- 304 (821)
T CHL00095 233 LEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI---DAANILKPALA----- 304 (821)
T ss_pred hcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc---cHHHHhHHHHh-----
Confidence 4789999988776 47889999999999999987788999999999998765322111 12222322332
Q ss_pred CCCcEEEEEecCCCC-----CCCHHHHcccccEEEccCCCHHHHHHHHHHHhc----cCCCCCChhhHHHHHHHcCCCCH
Q 011393 350 PNDLVIVMGATNKPQ-----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK----GQAFSLPGGDLERLVRETEGYSG 420 (487)
Q Consensus 350 ~~~~vivI~ttn~~~-----~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~----~~~~~l~~~~l~~La~~t~G~s~ 420 (487)
.+.+.+|++|+... ..++++.+||. .+.++.|+.++...|++.... .+++.++++.+..++..+.+|.+
T Consensus 305 -rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 305 -RGELQCIGATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred -CCCcEEEEeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 23478888887653 57999999998 589999999999888876442 34566889999999999888764
Q ss_pred -----HHHHHHHHHHHH
Q 011393 421 -----SDLQALCEEAAM 432 (487)
Q Consensus 421 -----~dL~~lv~~A~~ 432 (487)
.-.-.++.+|+.
T Consensus 383 ~r~lPdkaidlld~a~a 399 (821)
T CHL00095 383 DRFLPDKAIDLLDEAGS 399 (821)
T ss_pred cccCchHHHHHHHHHHH
Confidence 233345555543
No 107
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=7.7e-17 Score=174.22 Aligned_cols=192 Identities=22% Similarity=0.244 Sum_probs=143.8
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeE--------
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATF-------- 277 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~-------- 277 (487)
|.++|+|.+|++|+|++.+++.|+.++. .++.++.+|||||+|+|||++|+++|+.+++..
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~-----------~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c 74 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIA-----------EGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC 74 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHH-----------hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 5678999999999999999999988884 223356689999999999999999999876422
Q ss_pred -----------------EEEecCccchhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 278 -----------------FNVSASSLTSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 278 -----------------~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
+.++... ...-..++.+.+.+.. ....||||||+|.|. ...+
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-----------~~a~ 137 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS-----------TAAF 137 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-----------HHHH
Confidence 2222211 0112334444443321 234699999999882 3446
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.|+..|+.. ...+++|.+++..+.+.+.+++||. .+.|..++..+...++...+...++.++++.+..|+..+.
T Consensus 138 naLLk~LEep----p~~tv~Il~t~~~~kll~tI~SR~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~ 212 (585)
T PRK14950 138 NALLKTLEEP----PPHAIFILATTEVHKVPATILSRCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAAT 212 (585)
T ss_pred HHHHHHHhcC----CCCeEEEEEeCChhhhhHHHHhccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6778777743 3346666667778888899999997 6899999999999999999988898899999999999988
Q ss_pred CCCHHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAA 431 (487)
Q Consensus 417 G~s~~dL~~lv~~A~ 431 (487)
| +.+++.+.++..+
T Consensus 213 G-dlr~al~~LekL~ 226 (585)
T PRK14950 213 G-SMRDAENLLQQLA 226 (585)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 7777777777543
No 108
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.2e-16 Score=170.30 Aligned_cols=223 Identities=39% Similarity=0.608 Sum_probs=191.5
Q ss_pred ccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEe
Q 011393 236 AKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFI 314 (487)
Q Consensus 236 ~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~I 314 (487)
+..+..+... ..++.+++++||||||||++++++|.+ +..++.++.....+++.+..+...+.+|..+....|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 3444444443 577899999999999999999999999 77678889999999999999999999999999999999999
Q ss_pred chhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHc--ccccEEEccCCCHHHHHHHH
Q 011393 315 DEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLL 392 (487)
Q Consensus 315 DEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il 392 (487)
||+|.+.+.+.........++..+++..+++.. ... +++++.+|.+..+++++++ ||...+.+..|+...+.+++
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 83 DEIDALAPKRSSDQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred chhhhcccCccccccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 999999998877566677889999999999988 445 8899999999999999998 99999999999999999998
Q ss_pred HHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhCCC
Q 011393 393 KHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPS 468 (487)
Q Consensus 393 ~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ps 468 (487)
.......... .+.++..++..+.|++++++..+|.++...++++.. ........++.+||.++++.+.|+
T Consensus 160 ~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 160 QIHTRLMFLG-PPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----DLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHhcCCCc-ccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----ccCcccccccHHHHHHHHHhcCcc
Confidence 8887665544 367899999999999999999999999999988742 011223457899999999998775
No 109
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.73 E-value=1.5e-16 Score=163.14 Aligned_cols=185 Identities=19% Similarity=0.288 Sum_probs=129.6
Q ss_pred CcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe-----------------
Q 011393 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT----------------- 276 (487)
Q Consensus 214 ~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~----------------- 276 (487)
.|++|+|++.+++.|+.++.........+. .+.++++||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~--~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAG--SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999975543222111 1246789999999999999999999986553
Q ss_pred ------EEEEecCccchhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCC
Q 011393 277 ------FFNVSASSLTSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGV 346 (487)
Q Consensus 277 ------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 346 (487)
+..+.+.. ....-..++.+++.+.. ....|+||||+|.|. ....+.|+..|+.
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----------~~aanaLLk~LEe- 143 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----------ERAANALLKAVEE- 143 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----------HHHHHHHHHHhhc-
Confidence 11222111 01123346777766643 234699999999992 3445778888874
Q ss_pred CCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 011393 347 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 426 (487)
Q Consensus 347 ~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~l 426 (487)
++.++++|.+|+.++.+.+++++||. .+.|+.|+.++...++... .+ ++++.+..++..+.|..+..+..+
T Consensus 144 ---p~~~~~fIL~a~~~~~llpTIrSRc~-~i~f~~~~~~~i~~~L~~~---~~--~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 144 ---PPPRTVWLLCAPSPEDVLPTIRSRCR-HVALRTPSVEAVAEVLVRR---DG--VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred ---CCCCCeEEEEECChHHChHHHHhhCe-EEECCCCCHHHHHHHHHHh---cC--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 23334555555558999999999997 7999999999887776632 23 457778889999999776655443
No 110
>PRK06893 DNA replication initiation factor; Validated
Probab=99.73 E-value=2.8e-16 Score=150.62 Aligned_cols=210 Identities=12% Similarity=0.157 Sum_probs=134.7
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccc
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLT 286 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~ 286 (487)
.++.+|++++|.+... .+..... .+.. ...+.++||||||||||||++++|+++ +..+.+++.....
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~-------~~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRK-------NFID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHH-------Hhhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 3567899988765432 1111111 1111 122468999999999999999999985 3444555543211
Q ss_pred hhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 011393 287 SKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQEL 366 (487)
Q Consensus 287 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~l 366 (487)
.....++... .+..+|+|||++.+.+.. ... ..++..++..... +..++|++++..|..+
T Consensus 80 --------~~~~~~~~~~--~~~dlLilDDi~~~~~~~------~~~---~~l~~l~n~~~~~-~~~illits~~~p~~l 139 (229)
T PRK06893 80 --------YFSPAVLENL--EQQDLVCLDDLQAVIGNE------EWE---LAIFDLFNRIKEQ-GKTLLLISADCSPHAL 139 (229)
T ss_pred --------hhhHHHHhhc--ccCCEEEEeChhhhcCCh------HHH---HHHHHHHHHHHHc-CCcEEEEeCCCChHHc
Confidence 0111222222 245799999999985431 111 2233333333221 2235566666667666
Q ss_pred C---HHHHcccc--cEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccc
Q 011393 367 D---DAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTN 441 (487)
Q Consensus 367 d---~al~~Rf~--~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~ 441 (487)
+ +.+++|+. ..+.++.|+.+++.+|++..+...++.++++.++.|+++..| +.+.+..+++.....++.
T Consensus 140 ~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~----- 213 (229)
T PRK06893 140 SIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQ----- 213 (229)
T ss_pred cccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHh-----
Confidence 4 88999875 678899999999999999999888999999999999999987 677777777654322221
Q ss_pred hhccccccCCCCcHHHHHHHH
Q 011393 442 ILTVKANQLRPLRYEDFQKAM 462 (487)
Q Consensus 442 ~~~~~~~~~~~l~~~df~~al 462 (487)
..++||...+++++
T Consensus 214 -------~~~~it~~~v~~~L 227 (229)
T PRK06893 214 -------AQRKLTIPFVKEIL 227 (229)
T ss_pred -------cCCCCCHHHHHHHh
Confidence 12468887777765
No 111
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.73 E-value=1.7e-16 Score=178.51 Aligned_cols=210 Identities=19% Similarity=0.287 Sum_probs=156.7
Q ss_pred HhhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-------
Q 011393 201 MINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES------- 273 (487)
Q Consensus 201 ~~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~------- 273 (487)
.....+.++.++-.++.++|.++.++.+.+.+. ++...+++|+||||||||++|+++|..+
T Consensus 158 ~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~ 225 (852)
T TIGR03346 158 KYARDLTERAREGKLDPVIGRDEEIRRTIQVLS------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPE 225 (852)
T ss_pred HHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHh------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCch
Confidence 334566777788899999999998888877763 2334678999999999999999999985
Q ss_pred ---CCeEEEEecCccc--hhccchhHHHHHHHHHHHHh-cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC
Q 011393 274 ---QATFFNVSASSLT--SKWVGEGEKLVRTLFMVAIS-RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT 347 (487)
Q Consensus 274 ---~~~~~~v~~~~l~--~~~~g~~~~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 347 (487)
+.+++.++...+. ..|.|+.+..++.+|..+.. ..++||||||+|.|++....... ....+.|...+.
T Consensus 226 ~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~~~Lk~~l~--- 299 (852)
T TIGR03346 226 SLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA---MDAGNMLKPALA--- 299 (852)
T ss_pred hhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch---hHHHHHhchhhh---
Confidence 6788888887765 56888999999999988754 46899999999999865432111 122222222221
Q ss_pred CCCCCcEEEEEecCCC-----CCCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc----CCCCCChhhHHHHHHHcCCC
Q 011393 348 SNPNDLVIVMGATNKP-----QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----QAFSLPGGDLERLVRETEGY 418 (487)
Q Consensus 348 ~~~~~~vivI~ttn~~-----~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~----~~~~l~~~~l~~La~~t~G~ 418 (487)
.+.+.+|++|+.. ..+|+++.|||. .|.++.|+.+++..|++.+... +++.+.+..+..++..+.+|
T Consensus 300 ---~g~i~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 300 ---RGELHCIGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred ---cCceEEEEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 3448889988766 357999999997 5899999999999999876543 55667888999999888776
Q ss_pred CH-----HHHHHHHHHHHH
Q 011393 419 SG-----SDLQALCEEAAM 432 (487)
Q Consensus 419 s~-----~dL~~lv~~A~~ 432 (487)
.. .---.|+.+|+.
T Consensus 376 i~~r~lPdkAidlld~a~a 394 (852)
T TIGR03346 376 ITDRFLPDKAIDLIDEAAA 394 (852)
T ss_pred ccccCCchHHHHHHHHHHH
Confidence 53 333445555544
No 112
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.73 E-value=2.7e-16 Score=164.32 Aligned_cols=201 Identities=18% Similarity=0.298 Sum_probs=135.6
Q ss_pred CCCCCccccc-ChHH--HHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEEEe
Q 011393 210 SPSVKWEDVA-GLEK--AKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVS 281 (487)
Q Consensus 210 ~~~~~~~di~-G~~~--~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~v~ 281 (487)
.|..+|++++ |... +...+.++... ... ..+++||||||+|||+|++++|+++ +..+++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~----------~~~-~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKN----------PGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhC----------cCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3567899966 5332 33334333321 111 3569999999999999999999985 56788999
Q ss_pred cCccchhccchhH-HHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 011393 282 ASSLTSKWVGEGE-KLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 360 (487)
Q Consensus 282 ~~~l~~~~~g~~~-~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~tt 360 (487)
+.++...+..... ..+.. |.......+.+|+|||++.+.+.. ....+|+..++.+... +..+||++.
T Consensus 168 ~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~---------~~q~elf~~~n~l~~~--~k~iIitsd 235 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT---------GVQTELFHTFNELHDS--GKQIVICSD 235 (440)
T ss_pred HHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH---------HHHHHHHHHHHHHHHc--CCeEEEECC
Confidence 8877655432211 11222 222223368899999999885431 1223344444333322 224666666
Q ss_pred CCCCC---CCHHHHcccc--cEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q 011393 361 NKPQE---LDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 361 n~~~~---ld~al~~Rf~--~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a 434 (487)
..|.. +.+.+++||. ..+.+..||.+.|..|++..+...++.++++.++.|+....| +.++|..++......+
T Consensus 236 ~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred CCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence 66665 4678888985 567899999999999999999988899999999999999987 6788887777654433
No 113
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=2.3e-16 Score=170.35 Aligned_cols=194 Identities=18% Similarity=0.218 Sum_probs=147.8
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe---------
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--------- 276 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~--------- 276 (487)
+.++|+|.+|++|+|++.+++.|..++. .++.++.+|||||+|+|||++|+++|+.+.+.
T Consensus 7 ~~~kyRP~~f~~viGq~~~~~~L~~~i~-----------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~C 75 (614)
T PRK14971 7 SARKYRPSTFESVVGQEALTTTLKNAIA-----------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEAC 75 (614)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 5678999999999999999999999884 23445679999999999999999999987642
Q ss_pred ----------------EEEEecCccchhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 277 ----------------FFNVSASSLTSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 277 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
++.+++.+. .....++.+...+.. ....|++|||+|.| .....
T Consensus 76 g~C~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-----------s~~a~ 138 (614)
T PRK14971 76 NECESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-----------SQAAF 138 (614)
T ss_pred CcchHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-----------CHHHH
Confidence 222322111 113345565555432 22359999999998 23456
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.|+..|+. +...+++|.+|+.+..|.+++++||. .+.|..++.++....+...+.+.++.++++.+..|+..+.
T Consensus 139 naLLK~LEe----pp~~tifIL~tt~~~kIl~tI~SRc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~ 213 (614)
T PRK14971 139 NAFLKTLEE----PPSYAIFILATTEKHKILPTILSRCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKAD 213 (614)
T ss_pred HHHHHHHhC----CCCCeEEEEEeCCchhchHHHHhhhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 788888874 34446677777778899999999997 6999999999999999999999999999999999999997
Q ss_pred CCCHHHHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAAMM 433 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~~ 433 (487)
| +.+++..+++..+..
T Consensus 214 g-dlr~al~~Lekl~~y 229 (614)
T PRK14971 214 G-GMRDALSIFDQVVSF 229 (614)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 6 666776666665433
No 114
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.72 E-value=5e-16 Score=164.62 Aligned_cols=172 Identities=20% Similarity=0.294 Sum_probs=123.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccC
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTR 324 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~ 324 (487)
..++|||++|+|||+|++++|+++ +..++++++.++...+...........|... ...+.+|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence 459999999999999999999985 5788999998887665543322222223322 3356899999999985432
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC---CCCHHHHcccc--cEEEccCCCHHHHHHHHHHHhccC
Q 011393 325 MANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ---ELDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQ 399 (487)
Q Consensus 325 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~---~ld~al~~Rf~--~~i~i~~Pd~~~r~~il~~~l~~~ 399 (487)
....+|+..++.+... + ..+||++...|. .+++.|++||. ..+.+..||.+.|..||+..+...
T Consensus 394 ---------~tqeeLF~l~N~l~e~-g-k~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 394 ---------STQEEFFHTFNTLHNA-N-KQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred ---------HHHHHHHHHHHHHHhc-C-CCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence 1123344444433322 1 234554444443 46889999995 667899999999999999999999
Q ss_pred CCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q 011393 400 AFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 400 ~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a 434 (487)
++.++++.++.|+.+..+ +.++|..++......+
T Consensus 463 ~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a 496 (617)
T PRK14086 463 QLNAPPEVLEFIASRISR-NIRELEGALIRVTAFA 496 (617)
T ss_pred CCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 999999999999999876 6788888777654433
No 115
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.72 E-value=4.2e-16 Score=160.52 Aligned_cols=222 Identities=25% Similarity=0.324 Sum_probs=153.4
Q ss_pred ccChHHHHHHHHHHhhccccChhhhh----ccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch-hccch
Q 011393 218 VAGLEKAKQALMEMVILPAKRRDLFT----GLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVGE 292 (487)
Q Consensus 218 i~G~~~~k~~L~~~v~~~~~~~~~~~----~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~-~~~g~ 292 (487)
|+|++.+++.|...+..+..+-.... ....+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 89999999999877754322221100 11234578999999999999999999999999999999988753 57776
Q ss_pred h-HHHHHHHHHHH----HhcCCcEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcCCC---------CCCCCcEE
Q 011393 293 G-EKLVRTLFMVA----ISRQPCVIFIDEIDSIMSTRMAN---ENDASRRLKSEFLIQFDGVT---------SNPNDLVI 355 (487)
Q Consensus 293 ~-~~~i~~~f~~a----~~~~p~Il~IDEiD~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~---------~~~~~~vi 355 (487)
. +..+..++..+ ....++||||||||.+...+.+. .+-....++..||..|++.. ..+....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 4 33344444322 23467899999999997653221 11122357788898887531 11112344
Q ss_pred EEEecCCCC----------------------------------------------------CCCHHHHcccccEEEccCC
Q 011393 356 VMGATNKPQ----------------------------------------------------ELDDAVLRRLVKRIYVPLP 383 (487)
Q Consensus 356 vI~ttn~~~----------------------------------------------------~ld~al~~Rf~~~i~i~~P 383 (487)
+|.|+|... .+.|+|+.|++..+.|...
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L 312 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEEL 312 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCC
Confidence 555544300 1367888899999999999
Q ss_pred CHHHHHHHHHH----H-------hccCC--CCCChhhHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHhhc
Q 011393 384 DENVRRLLLKH----K-------LKGQA--FSLPGGDLERLVRE--TEGYSGSDLQALCEEAAMMPIRELG 439 (487)
Q Consensus 384 d~~~r~~il~~----~-------l~~~~--~~l~~~~l~~La~~--t~G~s~~dL~~lv~~A~~~a~~~~~ 439 (487)
+.++..+|+.. . +...+ +.+++..++.|++. ..++-++.|+.+++..+...+.++.
T Consensus 313 ~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p 383 (412)
T PRK05342 313 DEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELP 383 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcc
Confidence 99999998862 2 22333 44689999999987 4466788999999998888777653
No 116
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.71 E-value=8.3e-16 Score=147.87 Aligned_cols=207 Identities=14% Similarity=0.123 Sum_probs=135.7
Q ss_pred CCCCccccc-C-hHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCcc
Q 011393 211 PSVKWEDVA-G-LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSL 285 (487)
Q Consensus 211 ~~~~~~di~-G-~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l 285 (487)
+..+|++++ | ...+...+..+... ....+++||||||||||||+++++++. +..+.+++....
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~~------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALRQ------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 456788866 4 56667667666521 123579999999999999999999875 344556555442
Q ss_pred chhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 011393 286 TSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE 365 (487)
Q Consensus 286 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ 365 (487)
... ...+++... ...+|+|||++.+.+. ..... +|+..++..... +...+|+++++.|..
T Consensus 85 ~~~--------~~~~~~~~~--~~dlliiDdi~~~~~~-----~~~~~----~lf~l~n~~~e~-g~~~li~ts~~~p~~ 144 (235)
T PRK08084 85 AWF--------VPEVLEGME--QLSLVCIDNIECIAGD-----ELWEM----AIFDLYNRILES-GRTRLLITGDRPPRQ 144 (235)
T ss_pred hhh--------hHHHHHHhh--hCCEEEEeChhhhcCC-----HHHHH----HHHHHHHHHHHc-CCCeEEEeCCCChHH
Confidence 211 112222111 2358999999998432 11112 222222222111 111355556666655
Q ss_pred ---CCHHHHcccc--cEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhcc
Q 011393 366 ---LDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 440 (487)
Q Consensus 366 ---ld~al~~Rf~--~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~ 440 (487)
+.+.+++||. ..+.+..|+.+++.++++..+...++.++++.++.|+.+..| +.+.+..+++.....++..
T Consensus 145 l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~--- 220 (235)
T PRK08084 145 LNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASITA--- 220 (235)
T ss_pred cCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhc---
Confidence 5799999995 679999999999999999988888899999999999999987 6778888777643232221
Q ss_pred chhccccccCCCCcHHHHHHHH
Q 011393 441 NILTVKANQLRPLRYEDFQKAM 462 (487)
Q Consensus 441 ~~~~~~~~~~~~l~~~df~~al 462 (487)
.++||.+.+.+++
T Consensus 221 ---------~~~it~~~~k~~l 233 (235)
T PRK08084 221 ---------QRKLTIPFVKEIL 233 (235)
T ss_pred ---------CCCCCHHHHHHHH
Confidence 2457877777665
No 117
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.71 E-value=7.1e-16 Score=147.70 Aligned_cols=204 Identities=15% Similarity=0.208 Sum_probs=140.7
Q ss_pred CCCCCccccc--ChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCc
Q 011393 210 SPSVKWEDVA--GLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (487)
Q Consensus 210 ~~~~~~~di~--G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~ 284 (487)
.++.+|++++ +.+.+...+.++.. ......+++|+||+|||||+||++++++. +..++.+++..
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 3467899977 34566677766553 12345689999999999999999999874 66888888766
Q ss_pred cchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC-
Q 011393 285 LTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP- 363 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~- 363 (487)
+... + .....+.+|+|||+|.+.. ..+..++..++..... +..+++++++..|
T Consensus 81 ~~~~------------~--~~~~~~~~liiDdi~~l~~-----------~~~~~L~~~~~~~~~~-~~~~vl~~~~~~~~ 134 (227)
T PRK08903 81 PLLA------------F--DFDPEAELYAVDDVERLDD-----------AQQIALFNLFNRVRAH-GQGALLVAGPAAPL 134 (227)
T ss_pred hHHH------------H--hhcccCCEEEEeChhhcCc-----------hHHHHHHHHHHHHHHc-CCcEEEEeCCCCHH
Confidence 5321 1 1123467999999998721 1122333334332211 1223444444333
Q ss_pred -CCCCHHHHccc--ccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhcc
Q 011393 364 -QELDDAVLRRL--VKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 440 (487)
Q Consensus 364 -~~ld~al~~Rf--~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~ 440 (487)
..+.+.+++|| ...+.+++|+.+++..++..++...++.++++.++.|+....| +.+++..+++.....+...
T Consensus 135 ~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~--- 210 (227)
T PRK08903 135 ALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQ--- 210 (227)
T ss_pred hCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh---
Confidence 24568888888 4689999999999999999988888999999999999996554 8999999988754433222
Q ss_pred chhccccccCCCCcHHHHHHHHH
Q 011393 441 NILTVKANQLRPLRYEDFQKAMA 463 (487)
Q Consensus 441 ~~~~~~~~~~~~l~~~df~~al~ 463 (487)
.++||...+.+++.
T Consensus 211 ---------~~~i~~~~~~~~l~ 224 (227)
T PRK08903 211 ---------KRPVTLPLLREMLA 224 (227)
T ss_pred ---------CCCCCHHHHHHHHh
Confidence 25688888888875
No 118
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.71 E-value=2.7e-16 Score=159.01 Aligned_cols=243 Identities=23% Similarity=0.319 Sum_probs=167.3
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhcc--CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch-hccc-h
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGL--RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVG-E 292 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~-~~~g-~ 292 (487)
-|+|++++++.+...+.....+..+.... ..++++|||+||||||||++|+++|..++.+|+.+++..+.. .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 48999999999988876543332222111 234589999999999999999999999999999999987763 6777 4
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 011393 293 GEKLVRTLFMVA-------------------------------------------------------------------- 304 (487)
Q Consensus 293 ~~~~i~~~f~~a-------------------------------------------------------------------- 304 (487)
.+..++.+|+.|
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 566666665554
Q ss_pred -----------------------------------------------------------------------HhcCCcEEE
Q 011393 305 -----------------------------------------------------------------------ISRQPCVIF 313 (487)
Q Consensus 305 -----------------------------------------------------------------------~~~~p~Il~ 313 (487)
+..+.+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012346999
Q ss_pred echhhhhhccCCCCc-chHHHHHHHHHHHHhcCCCCC------CCCcEEEEEec----CCCCCCCHHHHcccccEEEccC
Q 011393 314 IDEIDSIMSTRMANE-NDASRRLKSEFLIQFDGVTSN------PNDLVIVMGAT----NKPQELDDAVLRRLVKRIYVPL 382 (487)
Q Consensus 314 IDEiD~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~------~~~~vivI~tt----n~~~~ld~al~~Rf~~~i~i~~ 382 (487)
|||||.++....... +-....++..||..++|-.-. ..+++++||+. ..|.+|-|.|..||..++.+..
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 332 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQA 332 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 999999997653222 223455788899988873221 12467888764 4577889999999999999999
Q ss_pred CCHHHHHHHHH-----------HHhccCC--CCCChhhHHHHHHHc-------CCCCHHHHHHHHHHHHHHhHHhhccch
Q 011393 383 PDENVRRLLLK-----------HKLKGQA--FSLPGGDLERLVRET-------EGYSGSDLQALCEEAAMMPIRELGTNI 442 (487)
Q Consensus 383 Pd~~~r~~il~-----------~~l~~~~--~~l~~~~l~~La~~t-------~G~s~~dL~~lv~~A~~~a~~~~~~~~ 442 (487)
++.++..+||. .+++-.+ +.++++.+..+|+.. .+.-.+-|+.+++.......-+....
T Consensus 333 L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p~~- 411 (441)
T TIGR00390 333 LTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAPDL- 411 (441)
T ss_pred CCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCC-
Confidence 99999988872 2223344 445888899888775 35556778877777665543332110
Q ss_pred hccccccCCCCcHHHHHHHHHh
Q 011393 443 LTVKANQLRPLRYEDFQKAMAV 464 (487)
Q Consensus 443 ~~~~~~~~~~l~~~df~~al~~ 464 (487)
......|+.+-+.+.+..
T Consensus 412 ----~~~~v~I~~~~V~~~l~~ 429 (441)
T TIGR00390 412 ----SGQNITIDADYVSKKLGA 429 (441)
T ss_pred ----CCCEEEECHHHHHhHHHH
Confidence 011233566656555554
No 119
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.71 E-value=4.9e-16 Score=148.46 Aligned_cols=191 Identities=16% Similarity=0.253 Sum_probs=132.0
Q ss_pred CCCccccc--ChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccc
Q 011393 212 SVKWEDVA--GLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLT 286 (487)
Q Consensus 212 ~~~~~di~--G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~ 286 (487)
+.+|++++ +.+.+++.|++++. ...+.+++|+||+|||||++|++++++. +.+++.+++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 45677776 46678888887753 1335689999999999999999999875 5788889987775
Q ss_pred hhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 011393 287 SKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQEL 366 (487)
Q Consensus 287 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~l 366 (487)
... ..++... ..+.+|+|||+|.+.... . .. ..+...++..... + ..+|++++..+..+
T Consensus 79 ~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~-----~-~~---~~L~~~l~~~~~~-~-~~iIits~~~~~~~ 137 (226)
T TIGR03420 79 QAD--------PEVLEGL--EQADLVCLDDVEAIAGQP-----E-WQ---EALFHLYNRVREA-G-GRLLIAGRAAPAQL 137 (226)
T ss_pred HhH--------HHHHhhc--ccCCEEEEeChhhhcCCh-----H-HH---HHHHHHHHHHHHc-C-CeEEEECCCChHHC
Confidence 322 1222222 234699999999883310 0 11 2233222221111 1 13455444444443
Q ss_pred --C-HHHHcccc--cEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Q 011393 367 --D-DAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIR 436 (487)
Q Consensus 367 --d-~al~~Rf~--~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~ 436 (487)
. +.+.+||. ..+.++.|+.+++..+++.++.+.++.+++..+..|+.. ++.+.+++..+++.+...+..
T Consensus 138 ~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 138 PLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred CcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 2 78888874 679999999999999999988888888999999999996 556999999999987654433
No 120
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.70 E-value=9e-16 Score=144.62 Aligned_cols=195 Identities=19% Similarity=0.303 Sum_probs=146.4
Q ss_pred cCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCc
Q 011393 208 DRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (487)
Q Consensus 208 ~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~ 284 (487)
....++.+++++|.+..++.|.+-....+ .+.|..++||||++|||||++++++.++. |..++.|...+
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl--------~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFL--------QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHH--------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 33457899999999999999987664221 13578899999999999999999998874 78888888776
Q ss_pred cchhccchhHHHHHHHHHHHH-hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 011393 285 LTSKWVGEGEKLVRTLFMVAI-SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 363 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~ 363 (487)
+.. +..+++..+ ...+-|||+||+- + +........|-..|+|-....+.+|+|.+|+|+.
T Consensus 91 L~~---------l~~l~~~l~~~~~kFIlf~DDLs-F---------e~~d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 91 LGD---------LPELLDLLRDRPYKFILFCDDLS-F---------EEGDTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred hcc---------HHHHHHHHhcCCCCEEEEecCCC-C---------CCCcHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 643 344555443 3356799999863 1 1123334567777888887888899999999886
Q ss_pred CCCC-----------------------HHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHH----HHHcC
Q 011393 364 QELD-----------------------DAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERL----VRETE 416 (487)
Q Consensus 364 ~~ld-----------------------~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~L----a~~t~ 416 (487)
+.++ -+|..||...+.|..|+.++-.+|++.++...++.++.+.+..- |..-.
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg 231 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRG 231 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC
Confidence 5442 14455999999999999999999999999999999887655543 34445
Q ss_pred CCCHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEE 429 (487)
Q Consensus 417 G~s~~dL~~lv~~ 429 (487)
|.||+--...|..
T Consensus 232 ~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 232 GRSGRTARQFIDD 244 (249)
T ss_pred CCCHHHHHHHHHH
Confidence 7888766666554
No 121
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.70 E-value=1.4e-15 Score=155.96 Aligned_cols=205 Identities=20% Similarity=0.231 Sum_probs=135.9
Q ss_pred cccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC---------CeEEEEecCcc
Q 011393 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ---------ATFFNVSASSL 285 (487)
Q Consensus 215 ~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~---------~~~~~v~~~~l 285 (487)
-++++|.++.++.|..++..... ...+.+++|+||||||||++++++++++. ..+++++|...
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 45799999999999888752211 12346799999999999999999998652 57888898654
Q ss_pred chh----------cc--ch--------hHHHHHHHHHHHH-hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc
Q 011393 286 TSK----------WV--GE--------GEKLVRTLFMVAI-SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFD 344 (487)
Q Consensus 286 ~~~----------~~--g~--------~~~~i~~~f~~a~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~ 344 (487)
.+. .. +. .......++.... ...+.||+|||+|.|.... ..++.+++...+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhcccc
Confidence 321 10 10 1222334444332 2456799999999996321 123334443311
Q ss_pred CCCCCCCCcEEEEEecCCCC---CCCHHHHcccc-cEEEccCCCHHHHHHHHHHHhcc--CCCCCChhhHHHHHHH---c
Q 011393 345 GVTSNPNDLVIVMGATNKPQ---ELDDAVLRRLV-KRIYVPLPDENVRRLLLKHKLKG--QAFSLPGGDLERLVRE---T 415 (487)
Q Consensus 345 ~~~~~~~~~vivI~ttn~~~---~ld~al~~Rf~-~~i~i~~Pd~~~r~~il~~~l~~--~~~~l~~~~l~~La~~---t 415 (487)
....+..++.+|+++|.+. .+++.+.+||. ..+.|++++.++..+|++..+.. .+..++++.++.++.. +
T Consensus 158 -~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~ 236 (365)
T TIGR02928 158 -NGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQE 236 (365)
T ss_pred -ccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHh
Confidence 1112234588888888875 57888999986 67999999999999999998862 2233566666665544 4
Q ss_pred CCCCHHHHHHHHHHHHHHhHHh
Q 011393 416 EGYSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 416 ~G~s~~dL~~lv~~A~~~a~~~ 437 (487)
.| ..+.+..+|+.|+..|..+
T Consensus 237 ~G-d~R~al~~l~~a~~~a~~~ 257 (365)
T TIGR02928 237 HG-DARKAIDLLRVAGEIAERE 257 (365)
T ss_pred cC-CHHHHHHHHHHHHHHHHHc
Confidence 45 4556667888888777554
No 122
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.69 E-value=1.8e-15 Score=164.04 Aligned_cols=236 Identities=20% Similarity=0.303 Sum_probs=153.7
Q ss_pred hhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc--------
Q 011393 202 INTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-------- 273 (487)
Q Consensus 202 ~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-------- 273 (487)
+...+.+.+++.+|++++|++.+++.+...+.. ..+.+++|+||||||||++|+++++..
T Consensus 140 ~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~ 207 (615)
T TIGR02903 140 LHKSAQSLLRPRAFSEIVGQERAIKALLAKVAS------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPF 207 (615)
T ss_pred hhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcc
Confidence 445667778899999999999999988766531 123579999999999999999998654
Q ss_pred --CCeEEEEecCccch-------hccchhHHH----HHHHHHH----------HHhcCCcEEEechhhhhhccCCCCcch
Q 011393 274 --QATFFNVSASSLTS-------KWVGEGEKL----VRTLFMV----------AISRQPCVIFIDEIDSIMSTRMANEND 330 (487)
Q Consensus 274 --~~~~~~v~~~~l~~-------~~~g~~~~~----i~~~f~~----------a~~~~p~Il~IDEiD~l~~~~~~~~~~ 330 (487)
+.+|+.++|..+.. .+++..... .+..+.. ......++|||||++.|
T Consensus 208 ~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L---------- 277 (615)
T TIGR02903 208 AEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL---------- 277 (615)
T ss_pred cCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC----------
Confidence 45789999876521 111111000 0000100 00123569999999988
Q ss_pred HHHHHHHHHHHHhcCCC------------------------CCCCCcEEEEE-ecCCCCCCCHHHHcccccEEEccCCCH
Q 011393 331 ASRRLKSEFLIQFDGVT------------------------SNPNDLVIVMG-ATNKPQELDDAVLRRLVKRIYVPLPDE 385 (487)
Q Consensus 331 ~~~~~~~~ll~~l~~~~------------------------~~~~~~vivI~-ttn~~~~ld~al~~Rf~~~i~i~~Pd~ 385 (487)
....+..++..|+... ......+++|+ ||+.+..+++++++||. .+.+++++.
T Consensus 278 -d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~ 355 (615)
T TIGR02903 278 -DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTP 355 (615)
T ss_pred -CHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCH
Confidence 2333444555543210 00122355554 55778899999999998 578888999
Q ss_pred HHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhh
Q 011393 386 NVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVI 465 (487)
Q Consensus 386 ~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~ 465 (487)
++...|++..+...++.++++.++.|+..++. ++..-+++..+...+..+... .........|+.+|+.+++..-
T Consensus 356 edi~~Il~~~a~~~~v~ls~eal~~L~~ys~~--gRraln~L~~~~~~~~~~~~~---~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 356 EDIALIVLNAAEKINVHLAAGVEELIARYTIE--GRKAVNILADVYGYALYRAAE---AGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHCCCc--HHHHHHHHHHHHHHHHHHHHH---hccCCCCeeECHHHHHHHhCCC
Confidence 99999999999888878889999999988763 343334555554443332110 0011123468999999999854
Q ss_pred C
Q 011393 466 R 466 (487)
Q Consensus 466 ~ 466 (487)
+
T Consensus 431 r 431 (615)
T TIGR02903 431 R 431 (615)
T ss_pred c
Confidence 3
No 123
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.69 E-value=6.1e-16 Score=156.50 Aligned_cols=219 Identities=24% Similarity=0.361 Sum_probs=157.2
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhccC--CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch-hccc-h
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLR--RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVG-E 292 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~~--~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~-~~~g-~ 292 (487)
.|+|++++++.+..++....++..+..... ..+.++||+||||||||++|+++|..++.+|+.++++.+.. .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 399999999999988864333322222221 23589999999999999999999999999999999988774 6777 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 011393 293 GEKLVRTLFMVAI------------------------------------------------------------------- 305 (487)
Q Consensus 293 ~~~~i~~~f~~a~------------------------------------------------------------------- 305 (487)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4566666655550
Q ss_pred -----------------------------------------------------------------------hcCCcEEEe
Q 011393 306 -----------------------------------------------------------------------SRQPCVIFI 314 (487)
Q Consensus 306 -----------------------------------------------------------------------~~~p~Il~I 314 (487)
..+.+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred chhhhhhccCCC-CcchHHHHHHHHHHHHhcCCCCC------CCCcEEEEEec----CCCCCCCHHHHcccccEEEccCC
Q 011393 315 DEIDSIMSTRMA-NENDASRRLKSEFLIQFDGVTSN------PNDLVIVMGAT----NKPQELDDAVLRRLVKRIYVPLP 383 (487)
Q Consensus 315 DEiD~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~------~~~~vivI~tt----n~~~~ld~al~~Rf~~~i~i~~P 383 (487)
||||.++...+. +.+-....++..||..++|-.-. ..+++++||+- ..|.+|-|.|..||..++.+..+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 335 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDAL 335 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 999999976532 22233455788899988873221 12467888764 45778899999999999999999
Q ss_pred CHHHHHHHHH-----------HHhccCC--CCCChhhHHHHHHHc-------CCCCHHHHHHHHHHHHHHhH
Q 011393 384 DENVRRLLLK-----------HKLKGQA--FSLPGGDLERLVRET-------EGYSGSDLQALCEEAAMMPI 435 (487)
Q Consensus 384 d~~~r~~il~-----------~~l~~~~--~~l~~~~l~~La~~t-------~G~s~~dL~~lv~~A~~~a~ 435 (487)
+.+...+||. .++.-.+ +.++++.++.+|+.. .+.-.+-|+.+++.......
T Consensus 336 ~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~ 407 (443)
T PRK05201 336 TEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDIS 407 (443)
T ss_pred CHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHh
Confidence 9999988873 1233334 445888999888775 34456778888777665543
No 124
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.68 E-value=1.3e-15 Score=144.75 Aligned_cols=198 Identities=23% Similarity=0.339 Sum_probs=129.8
Q ss_pred CCCCccccc-C--hHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEEEec
Q 011393 211 PSVKWEDVA-G--LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSA 282 (487)
Q Consensus 211 ~~~~~~di~-G--~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~v~~ 282 (487)
|..+|++++ | .+.+...+......+ ......++||||+|+|||+|+++++++. +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP----------GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST----------TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC----------CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 567899975 5 455565565554321 1223569999999999999999999873 678999998
Q ss_pred CccchhccchhHH-HHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 011393 283 SSLTSKWVGEGEK-LVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 361 (487)
Q Consensus 283 ~~l~~~~~g~~~~-~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn 361 (487)
.++...+...... .+..+... -....+|+|||+|.+..+ ...+.+|+..++.+... +..+|+++..
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~~--~~~~DlL~iDDi~~l~~~---------~~~q~~lf~l~n~~~~~--~k~li~ts~~ 139 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKDR--LRSADLLIIDDIQFLAGK---------QRTQEELFHLFNRLIES--GKQLILTSDR 139 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHH--HCTSSEEEEETGGGGTTH---------HHHHHHHHHHHHHHHHT--TSEEEEEESS
T ss_pred HHHHHHHHHHHHcccchhhhhh--hhcCCEEEEecchhhcCc---------hHHHHHHHHHHHHHHhh--CCeEEEEeCC
Confidence 8876554432211 11222222 235579999999998432 23345555555444333 2246666666
Q ss_pred CCCC---CCHHHHcccc--cEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 011393 362 KPQE---LDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAM 432 (487)
Q Consensus 362 ~~~~---ld~al~~Rf~--~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~ 432 (487)
.|.. +++.+++||. ..+.+..|+.+.|..|++..+...++.++++.++.|+....+ +.++|..++.....
T Consensus 140 ~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 140 PPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp -TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred CCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 6655 4788999987 578899999999999999999999999999999999999875 78888888776543
No 125
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.68 E-value=4e-15 Score=154.21 Aligned_cols=226 Identities=18% Similarity=0.198 Sum_probs=150.5
Q ss_pred CCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEEEecCccch
Q 011393 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSASSLTS 287 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~v~~~~l~~ 287 (487)
..-+.++|.++..+.|...+..... ...+.+++|+||||||||++++.+++++ +..+++++|....+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 3456799999999999888742211 1234579999999999999999999876 57789999865432
Q ss_pred h----------ccc--------hhHHHHHHHHHHHH-hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC
Q 011393 288 K----------WVG--------EGEKLVRTLFMVAI-SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS 348 (487)
Q Consensus 288 ~----------~~g--------~~~~~i~~~f~~a~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 348 (487)
. ..+ .....+..+..... ...+.||+|||+|.+.... ....+..|+..++...
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~~~l~~l~~~~~~~~- 170 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GNDVLYSLLRAHEEYP- 170 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------CchHHHHHHHhhhccC-
Confidence 1 111 01222333333332 2356799999999996211 1234455555544332
Q ss_pred CCCCcEEEEEecCCCC---CCCHHHHcccc-cEEEccCCCHHHHHHHHHHHhccC--CCCCChhhHHHHHHHcCCC--CH
Q 011393 349 NPNDLVIVMGATNKPQ---ELDDAVLRRLV-KRIYVPLPDENVRRLLLKHKLKGQ--AFSLPGGDLERLVRETEGY--SG 420 (487)
Q Consensus 349 ~~~~~vivI~ttn~~~---~ld~al~~Rf~-~~i~i~~Pd~~~r~~il~~~l~~~--~~~l~~~~l~~La~~t~G~--s~ 420 (487)
..++.+|+++|.+. .+++.+.+||. ..+.+++++.++..+|++..+... +..++++.++.+++.+.+. ..
T Consensus 171 --~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 248 (394)
T PRK00411 171 --GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDA 248 (394)
T ss_pred --CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcH
Confidence 22577888877653 46888888875 578999999999999999887642 2346788899998888432 24
Q ss_pred HHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhCC
Q 011393 421 SDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRP 467 (487)
Q Consensus 421 ~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~p 467 (487)
+.+..+|..|+..|..+. ...|+.+|+..|+..+.+
T Consensus 249 r~a~~ll~~a~~~a~~~~-----------~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 249 RVAIDLLRRAGLIAEREG-----------SRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHHHHHHHHHHHHHcC-----------CCCcCHHHHHHHHHHHHH
Confidence 455577777777665431 235788888888776644
No 126
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.67 E-value=2.3e-16 Score=145.02 Aligned_cols=192 Identities=18% Similarity=0.202 Sum_probs=140.0
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-----eEEE
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA-----TFFN 279 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~-----~~~~ 279 (487)
.|+++|+|..+.||+|.++....|.-+.. ....++++|.||||||||+-+.++|+++-. .+++
T Consensus 16 ~wVeKYrP~~l~dIVGNe~tv~rl~via~------------~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 16 PWVEKYRPSVLQDIVGNEDTVERLSVIAK------------EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred hHHHhhCchHHHHhhCCHHHHHHHHHHHH------------cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 49999999999999999999999986663 123468999999999999999999999632 3567
Q ss_pred EecCccchhccchhHHHHHHHHHHHHhc----CCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEE
Q 011393 280 VSASSLTSKWVGEGEKLVRTLFMVAISR----QPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVI 355 (487)
Q Consensus 280 v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vi 355 (487)
+++++-.+-.+ ....+ ..|..-+.. ...||++||+|++. ...+..+...|+-... ...
T Consensus 84 LNASdeRGIDv--VRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT-----------~gAQQAlRRtMEiyS~----ttR 145 (333)
T KOG0991|consen 84 LNASDERGIDV--VRNKI-KMFAQKKVTLPPGRHKIIILDEADSMT-----------AGAQQALRRTMEIYSN----TTR 145 (333)
T ss_pred ccCccccccHH--HHHHH-HHHHHhhccCCCCceeEEEeeccchhh-----------hHHHHHHHHHHHHHcc----cch
Confidence 88877544221 12222 334433322 23599999999983 2233344444442222 245
Q ss_pred EEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHH
Q 011393 356 VMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALC 427 (487)
Q Consensus 356 vI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv 427 (487)
+..+||....+-+++.+||. .+.+...+..+...-+....+.+.+.++++.++.+....+|.....|.+|-
T Consensus 146 FalaCN~s~KIiEPIQSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQ 216 (333)
T KOG0991|consen 146 FALACNQSEKIIEPIQSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQ 216 (333)
T ss_pred hhhhhcchhhhhhhHHhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHH
Confidence 67789999999999999998 466777777777776777788888999999999999999987777666663
No 127
>PRK08727 hypothetical protein; Validated
Probab=99.67 E-value=5.5e-15 Score=141.98 Aligned_cols=208 Identities=17% Similarity=0.260 Sum_probs=132.7
Q ss_pred CCCCcccccC-hHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccc
Q 011393 211 PSVKWEDVAG-LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLT 286 (487)
Q Consensus 211 ~~~~~~di~G-~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~ 286 (487)
+..+|+++++ .......+..... ......++|+||+|||||+|++++++++ +..+++++..++.
T Consensus 14 ~~~~f~~f~~~~~n~~~~~~~~~~------------~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 14 SDQRFDSYIAAPDGLLAQLQALAA------------GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred CcCChhhccCCcHHHHHHHHHHHh------------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence 4567888654 4444444433221 1123459999999999999999997763 5666677654432
Q ss_pred hhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 011393 287 SKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQEL 366 (487)
Q Consensus 287 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~l 366 (487)
. .+...+... ....+|+|||+|.+.... . . ...++..++..... + .-+|+++...|..+
T Consensus 82 ~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~~-----~-~---~~~lf~l~n~~~~~-~-~~vI~ts~~~p~~l 140 (233)
T PRK08727 82 G--------RLRDALEAL--EGRSLVALDGLESIAGQR-----E-D---EVALFDFHNRARAA-G-ITLLYTARQMPDGL 140 (233)
T ss_pred h--------hHHHHHHHH--hcCCEEEEeCcccccCCh-----H-H---HHHHHHHHHHHHHc-C-CeEEEECCCChhhh
Confidence 2 222333322 345699999999885432 1 1 12233333322211 1 12445455566655
Q ss_pred ---CHHHHccc--ccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccc
Q 011393 367 ---DDAVLRRL--VKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTN 441 (487)
Q Consensus 367 ---d~al~~Rf--~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~ 441 (487)
++.+++|| ...+.++.|+.+++.++++.++...++.++++.++.|+..+.| ..+.+.++++.....+...
T Consensus 141 ~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~---- 215 (233)
T PRK08727 141 ALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA---- 215 (233)
T ss_pred hhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh----
Confidence 79999997 4678999999999999999988878899999999999999886 4555555555443323221
Q ss_pred hhccccccCCCCcHHHHHHHHHh
Q 011393 442 ILTVKANQLRPLRYEDFQKAMAV 464 (487)
Q Consensus 442 ~~~~~~~~~~~l~~~df~~al~~ 464 (487)
.+.||...+.+.+..
T Consensus 216 --------~~~it~~~~~~~l~~ 230 (233)
T PRK08727 216 --------KRRVTVPFLRRVLEE 230 (233)
T ss_pred --------CCCCCHHHHHHHHhh
Confidence 135788887777754
No 128
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.66 E-value=2.1e-15 Score=166.83 Aligned_cols=228 Identities=17% Similarity=0.241 Sum_probs=156.7
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch---------
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS--------- 287 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~--------- 287 (487)
++.|++.+|+.+.+++....... ......++|+||||||||++++.+|..++.+|+.++.+....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 59999999999999886433221 123457999999999999999999999999999988765432
Q ss_pred hccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCC---------C--CCCCCcEEE
Q 011393 288 KWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGV---------T--SNPNDLVIV 356 (487)
Q Consensus 288 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------~--~~~~~~viv 356 (487)
.|.|.....+...+..+.... .||||||+|.+...... .....|+..+|.- . ...-.++++
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~g-------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMRG-------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccCC-------CHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 355555445555555443334 48999999999654221 1234455555421 0 011246899
Q ss_pred EEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc----------CCCCCChhhHHHHHHHc-CCCCHHHHHH
Q 011393 357 MGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----------QAFSLPGGDLERLVRET-EGYSGSDLQA 425 (487)
Q Consensus 357 I~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~----------~~~~l~~~~l~~La~~t-~G~s~~dL~~ 425 (487)
|+|+|.. .|+++|++||. .|.+..++.++..+|++.++-. ..+.+++..+..|++.+ ..+-.+.|+.
T Consensus 469 i~TaN~~-~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR 546 (784)
T PRK10787 469 VATSNSM-NIPAPLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLER 546 (784)
T ss_pred EEcCCCC-CCCHHHhccee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHH
Confidence 9999887 59999999997 7899999999999999888731 23456888888888643 3445678888
Q ss_pred HHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHh
Q 011393 426 LCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAV 464 (487)
Q Consensus 426 lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~ 464 (487)
+++..+..++.+.... .......|+.+++.+.+..
T Consensus 547 ~I~~i~r~~l~~~~~~----~~~~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 547 EISKLCRKAVKQLLLD----KSLKHIEINGDNLHDYLGV 581 (784)
T ss_pred HHHHHHHHHHHHHHhc----CCCceeeecHHHHHHHhCC
Confidence 8887766665553210 0011235788888887763
No 129
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.66 E-value=2.5e-14 Score=153.87 Aligned_cols=218 Identities=17% Similarity=0.219 Sum_probs=144.0
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCeEEEEecCcc
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----------QATFFNVSASSL 285 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~----------~~~~~~v~~~~l 285 (487)
+.|.|.++.++.|..++...+.. ..+...++|+|+||||||++++.+..++ .+.+++|+|..+
T Consensus 755 D~LPhREeEIeeLasfL~paIkg-------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ-------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc-------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 67999999999999888533321 1233445799999999999999998765 256789999654
Q ss_pred chhcc----------------c-hhHHHHHHHHHHHH--hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCC
Q 011393 286 TSKWV----------------G-EGEKLVRTLFMVAI--SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGV 346 (487)
Q Consensus 286 ~~~~~----------------g-~~~~~i~~~f~~a~--~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 346 (487)
...+. | .....+..+|.... .....||+|||||.|... ...++-.|+....
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK--------~QDVLYnLFR~~~-- 897 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK--------TQKVLFTLFDWPT-- 897 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc--------HHHHHHHHHHHhh--
Confidence 32210 1 12234555565442 233569999999999643 1233333333322
Q ss_pred CCCCCCcEEEEEecCC---CCCCCHHHHccccc-EEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHH
Q 011393 347 TSNPNDLVIVMGATNK---PQELDDAVLRRLVK-RIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSD 422 (487)
Q Consensus 347 ~~~~~~~vivI~ttn~---~~~ld~al~~Rf~~-~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~d 422 (487)
.....++|||++|. +..|++.+++||.. ++.|++++.++...||+..+......++++.++.+|+..... .+|
T Consensus 898 --~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~-SGD 974 (1164)
T PTZ00112 898 --KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV-SGD 974 (1164)
T ss_pred --ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc-CCH
Confidence 22456889999875 45678889999874 488999999999999999988654457899999998854422 234
Q ss_pred HH---HHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhCC
Q 011393 423 LQ---ALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRP 467 (487)
Q Consensus 423 L~---~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~p 467 (487)
++ .+|+.|+..+ +...|+.+|+.+|+..+-.
T Consensus 975 ARKALDILRrAgEik--------------egskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 975 IRKALQICRKAFENK--------------RGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred HHHHHHHHHHHHhhc--------------CCCccCHHHHHHHHHHHHh
Confidence 43 4455554321 1125777777777765533
No 130
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.66 E-value=6e-15 Score=154.39 Aligned_cols=193 Identities=16% Similarity=0.207 Sum_probs=133.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEEEecCccchhccchhHH---HHHHHHHHHHhcCCcEEEechhhhh
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSASSLTSKWVGEGEK---LVRTLFMVAISRQPCVIFIDEIDSI 320 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~v~~~~l~~~~~g~~~~---~i~~~f~~a~~~~p~Il~IDEiD~l 320 (487)
..+++|||++|+|||+|++++++++ +..++++++.++...+...... .+..+... .....+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 4579999999999999999999964 5788899988877655433221 12221111 245679999999988
Q ss_pred hccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC---CCHHHHcccc--cEEEccCCCHHHHHHHHHHH
Q 011393 321 MSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE---LDDAVLRRLV--KRIYVPLPDENVRRLLLKHK 395 (487)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~---ld~al~~Rf~--~~i~i~~Pd~~~r~~il~~~ 395 (487)
.++ .....+|+..++....... .+|+++...|.. +++.+++||. ..+.+..|+.++|.+|++..
T Consensus 219 ~~k---------~~~~e~lf~l~N~~~~~~k--~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 219 SYK---------EKTNEIFFTIFNNFIENDK--QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred cCC---------HHHHHHHHHHHHHHHHcCC--cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 432 1223344444443332222 355554455543 5789999996 66788899999999999999
Q ss_pred hccCCC--CCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhh
Q 011393 396 LKGQAF--SLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVI 465 (487)
Q Consensus 396 l~~~~~--~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~ 465 (487)
+...++ .++++.++.|+..+.| +++.|..+|..+...++.... .++|+.+.+.++++.+
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~----------~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPE----------EKIITIEIVSDLFRDI 348 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccC----------CCCCCHHHHHHHHhhc
Confidence 987664 6899999999999987 788999998887655543210 1346666677776654
No 131
>PRK05642 DNA replication initiation factor; Validated
Probab=99.65 E-value=9.1e-15 Score=140.52 Aligned_cols=180 Identities=16% Similarity=0.176 Sum_probs=126.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRM 325 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~ 325 (487)
..+++||||+|||||||++++++++ +..+++++..++.... ..+.+... ...+|+|||++.+.+..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCCh-
Confidence 4679999999999999999999764 6778888877765321 12222222 23599999999884321
Q ss_pred CCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC---CHHHHcccc--cEEEccCCCHHHHHHHHHHHhccCC
Q 011393 326 ANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQEL---DDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQA 400 (487)
Q Consensus 326 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~l---d~al~~Rf~--~~i~i~~Pd~~~r~~il~~~l~~~~ 400 (487)
....+|+..++..... +..+|++++..|..+ .+.+++||. ..+.+..|+.+++..+++..+...+
T Consensus 114 --------~~~~~Lf~l~n~~~~~--g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 --------DWEEALFHLFNRLRDS--GRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred --------HHHHHHHHHHHHHHhc--CCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 1223444444443322 235777776656433 689999994 5677899999999999997777778
Q ss_pred CCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHH
Q 011393 401 FSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAM 462 (487)
Q Consensus 401 ~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al 462 (487)
+.++++.++.|+++..| +.+.+..+++.....++.. .++||..-+++++
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~------------~~~it~~~~~~~L 232 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQA------------QRKLTIPFLKETL 232 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHc------------CCcCCHHHHHHHh
Confidence 89999999999999987 7788877777654433331 2457777666665
No 132
>PRK06620 hypothetical protein; Validated
Probab=99.65 E-value=1.2e-14 Score=137.56 Aligned_cols=195 Identities=14% Similarity=0.205 Sum_probs=128.0
Q ss_pred CCCCcccccCh---HHHHHHHHHHhhccccChhhhhccCCC-CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccc
Q 011393 211 PSVKWEDVAGL---EKAKQALMEMVILPAKRRDLFTGLRRP-ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (487)
Q Consensus 211 ~~~~~~di~G~---~~~k~~L~~~v~~~~~~~~~~~~~~~~-~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~ 286 (487)
+..+|++++-- ..+...+.++...+ ...| .+.++||||||||||||++++++..+..++. ....
T Consensus 11 ~~~tfd~Fvvg~~N~~a~~~~~~~~~~~---------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~- 78 (214)
T PRK06620 11 SKYHPDEFIVSSSNDQAYNIIKNWQCGF---------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF- 78 (214)
T ss_pred CCCCchhhEecccHHHHHHHHHHHHHcc---------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-
Confidence 45678885543 34555565554211 0122 2679999999999999999999988754322 1110
Q ss_pred hhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC-
Q 011393 287 SKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE- 365 (487)
Q Consensus 287 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~- 365 (487)
....+ ....+|+|||||.+ ... +|+..++.+... +..+||+++..|..
T Consensus 79 ----------~~~~~-----~~~d~lliDdi~~~-----------~~~---~lf~l~N~~~e~--g~~ilits~~~p~~l 127 (214)
T PRK06620 79 ----------NEEIL-----EKYNAFIIEDIENW-----------QEP---ALLHIFNIINEK--QKYLLLTSSDKSRNF 127 (214)
T ss_pred ----------chhHH-----hcCCEEEEeccccc-----------hHH---HHHHHHHHHHhc--CCEEEEEcCCCcccc
Confidence 00111 23469999999955 111 233332222222 23677777755554
Q ss_pred -CCHHHHcccc--cEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccch
Q 011393 366 -LDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNI 442 (487)
Q Consensus 366 -ld~al~~Rf~--~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~ 442 (487)
+ +++++|+. ..+.+..|+.+.+..+++..+...++.++++.++.|+.+..| +.+.+..+++.....+..
T Consensus 128 ~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~------ 199 (214)
T PRK06620 128 TL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALI------ 199 (214)
T ss_pred ch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH------
Confidence 5 88999987 468999999999999999999888899999999999999987 677777777764322211
Q ss_pred hccccccCCCCcHHHHHHHH
Q 011393 443 LTVKANQLRPLRYEDFQKAM 462 (487)
Q Consensus 443 ~~~~~~~~~~l~~~df~~al 462 (487)
..++||...+.+++
T Consensus 200 ------~~~~it~~~~~~~l 213 (214)
T PRK06620 200 ------SKRKITISLVKEVL 213 (214)
T ss_pred ------cCCCCCHHHHHHHh
Confidence 12457877777665
No 133
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.64 E-value=7.6e-15 Score=150.46 Aligned_cols=221 Identities=25% Similarity=0.353 Sum_probs=151.5
Q ss_pred ccChHHHHHHHHHHhhccccChhhh------hccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch-hcc
Q 011393 218 VAGLEKAKQALMEMVILPAKRRDLF------TGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWV 290 (487)
Q Consensus 218 i~G~~~~k~~L~~~v~~~~~~~~~~------~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~-~~~ 290 (487)
|+|++++++.|...+.....+-... .+......++||+||||||||++|+++|..++.+|..+++..+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 7999999999987774222211100 001122468999999999999999999999999999999887653 577
Q ss_pred chh-HHHHHHHHHHH----HhcCCcEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcCCCCC---------CCCc
Q 011393 291 GEG-EKLVRTLFMVA----ISRQPCVIFIDEIDSIMSTRMANE---NDASRRLKSEFLIQFDGVTSN---------PNDL 353 (487)
Q Consensus 291 g~~-~~~i~~~f~~a----~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~---------~~~~ 353 (487)
|.. +..+..++..+ ....++||||||+|.+.+.+.... +-....+++.||..|+|.... +..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 764 34444444322 234678999999999977533211 111235778888888765321 1234
Q ss_pred EEEEEecCCC---------------------------C-----------------------CCCHHHHcccccEEEccCC
Q 011393 354 VIVMGATNKP---------------------------Q-----------------------ELDDAVLRRLVKRIYVPLP 383 (487)
Q Consensus 354 vivI~ttn~~---------------------------~-----------------------~ld~al~~Rf~~~i~i~~P 383 (487)
.++|.|+|-. . .+.|+|+.|++.++.|...
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL 318 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKL 318 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCC
Confidence 5677776651 0 0347888899999999999
Q ss_pred CHHHHHHHHHHH----h-------c--cCCCCCChhhHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHhh
Q 011393 384 DENVRRLLLKHK----L-------K--GQAFSLPGGDLERLVRE--TEGYSGSDLQALCEEAAMMPIREL 438 (487)
Q Consensus 384 d~~~r~~il~~~----l-------~--~~~~~l~~~~l~~La~~--t~G~s~~dL~~lv~~A~~~a~~~~ 438 (487)
+.++..+|+... + . +..+.+++..++.|++. ...+.++.|+.+++.....++-++
T Consensus 319 ~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 319 DEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 999998887652 2 1 23344588999999987 346678899999998888776664
No 134
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.64 E-value=5.8e-15 Score=162.27 Aligned_cols=207 Identities=17% Similarity=0.240 Sum_probs=146.2
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch-----hccc
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-----KWVG 291 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~-----~~~g 291 (487)
.|+|++++++.|.+.+...... .....+|..++||+||||||||++|+++|..++.+|+.++++++.. .++|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~g---l~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcc---ccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 3899999999999988533210 0111345567999999999999999999999999999999987643 2222
Q ss_pred hhH-----HHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC-CCC------CCcEEEEEe
Q 011393 292 EGE-----KLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT-SNP------NDLVIVMGA 359 (487)
Q Consensus 292 ~~~-----~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~------~~~vivI~t 359 (487)
... .....+.+..+....+||||||||.+ ...+++.|+..|+... ... -.+++||+|
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~T 604 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEe
Confidence 110 01112223334455689999999998 3567788888886321 111 135788888
Q ss_pred cCCC-------------------------CCCCHHHHcccccEEEccCCCHHHHHHHHHHHhc---------cCCCCCCh
Q 011393 360 TNKP-------------------------QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK---------GQAFSLPG 405 (487)
Q Consensus 360 tn~~-------------------------~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~---------~~~~~l~~ 405 (487)
||.- ..+.|+|+.|++.++.|++.+.++..+|+...+. +..+.+++
T Consensus 605 sN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~ 684 (758)
T PRK11034 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQ 684 (758)
T ss_pred CCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECH
Confidence 8832 1256899999999999999999999998876653 33455688
Q ss_pred hhHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHh
Q 011393 406 GDLERLVRET--EGYSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 406 ~~l~~La~~t--~G~s~~dL~~lv~~A~~~a~~~ 437 (487)
..++.|+... ..|.++.|+.+++.-...++.+
T Consensus 685 ~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 685 EARDWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 8999999763 2455788998888877766554
No 135
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.62 E-value=4e-14 Score=143.63 Aligned_cols=173 Identities=23% Similarity=0.371 Sum_probs=130.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhc
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMS 322 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~ 322 (487)
+...++||||.|.|||||++|++++. +..+++++...+...++......--.-|..-. +-.+++|||++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 45679999999999999999999985 45688888877766655443332223344433 456999999999966
Q ss_pred cCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC---CHHHHcccc--cEEEccCCCHHHHHHHHHHHhc
Q 011393 323 TRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQEL---DDAVLRRLV--KRIYVPLPDENVRRLLLKHKLK 397 (487)
Q Consensus 323 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~l---d~al~~Rf~--~~i~i~~Pd~~~r~~il~~~l~ 397 (487)
+ .+...+|+..+..+..... -+|+++...|..+ .+.|++||. ..+.+.+||.+.|..|++....
T Consensus 190 k---------~~~qeefFh~FN~l~~~~k--qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 190 K---------ERTQEEFFHTFNALLENGK--QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred C---------hhHHHHHHHHHHHHHhcCC--EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 4 2335566666655544332 5677777777765 589999997 5678889999999999999999
Q ss_pred cCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q 011393 398 GQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 398 ~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a 434 (487)
..++.++++.+..++..... +.++|..++......+
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a 294 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFA 294 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHH
Confidence 99999999999999999875 6788887777665555
No 136
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=99.61 E-value=3.2e-15 Score=116.48 Aligned_cols=79 Identities=41% Similarity=0.647 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011393 50 LKGYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVSDRLQAL 128 (487)
Q Consensus 50 ~k~~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~rae~~k~~v~~rl~~L 128 (487)
||+||++|+++|++||++||+|..++|+.+|++|+++|.+++.++++...++..|++++.|++||.+++.+|++|+..|
T Consensus 1 ik~~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL~~L 79 (79)
T cd02679 1 IRGYYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRLQVL 79 (79)
T ss_pred CchHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5899999999999999999999999999999999999999999998788999999999999999999999999998765
No 137
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.60 E-value=2.3e-14 Score=143.64 Aligned_cols=164 Identities=20% Similarity=0.279 Sum_probs=104.7
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-------CCe--EEEE
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-------QAT--FFNV 280 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-------~~~--~~~v 280 (487)
..+..|.+|+|++++++.|.-.+.. ....|+||+||||||||++|++++.-+ +++ +..+
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAID------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhc------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 3468899999999999988765431 112589999999999999999999987 321 1111
Q ss_pred ecC-cc--------c---------------hhccchh--HHHH---HHHHHHH--HhcCCcEEEechhhhhhccCCCCcc
Q 011393 281 SAS-SL--------T---------------SKWVGEG--EKLV---RTLFMVA--ISRQPCVIFIDEIDSIMSTRMANEN 329 (487)
Q Consensus 281 ~~~-~l--------~---------------~~~~g~~--~~~i---~~~f~~a--~~~~p~Il~IDEiD~l~~~~~~~~~ 329 (487)
.+. ++ . ...+|.. +..+ ...|..- ......+|||||++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl--------- 140 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL--------- 140 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------
Confidence 110 00 0 0011110 0000 0001000 0112369999999988
Q ss_pred hHHHHHHHHHHHHhcCCC---------CCCCCcEEEEEecCCCC-CCCHHHHcccccEEEccCCCH-HHHHHHHHHHh
Q 011393 330 DASRRLKSEFLIQFDGVT---------SNPNDLVIVMGATNKPQ-ELDDAVLRRLVKRIYVPLPDE-NVRRLLLKHKL 396 (487)
Q Consensus 330 ~~~~~~~~~ll~~l~~~~---------~~~~~~vivI~ttn~~~-~ld~al~~Rf~~~i~i~~Pd~-~~r~~il~~~l 396 (487)
...++..|+..|+... .....++++++++|..+ .++++++.||...+.++.|.. ++|.+++....
T Consensus 141 --~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 141 --EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred --CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 3456667777664321 12234688898888654 589999999999999998876 88889888743
No 138
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=2e-13 Score=139.01 Aligned_cols=187 Identities=19% Similarity=0.148 Sum_probs=128.7
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeE------------
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATF------------ 277 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~------------ 277 (487)
..|..+++|+|++.+++.|.+.+. ..+.++.+||+||+|+||+++|.++|+.+-+.-
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~-----------~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYR-----------SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 357899999999999999999885 334567899999999999999999999863311
Q ss_pred ----------------------EEEecC--ccchhc-cchhHHHHHHHHHHH----HhcCCcEEEechhhhhhccCCCCc
Q 011393 278 ----------------------FNVSAS--SLTSKW-VGEGEKLVRTLFMVA----ISRQPCVIFIDEIDSIMSTRMANE 328 (487)
Q Consensus 278 ----------------------~~v~~~--~l~~~~-~g~~~~~i~~~f~~a----~~~~p~Il~IDEiD~l~~~~~~~~ 328 (487)
+.+... +-..+. ..-.-..++.+...+ ....+.||+|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 111100 000000 000123344444333 2346779999999988
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhH
Q 011393 329 NDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDL 408 (487)
Q Consensus 329 ~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l 408 (487)
.....+.|+..++. +...+++|.+|+.++.+.+.+++||. .+.++.|+.++..+++..... ..++..+
T Consensus 154 ---~~~aanaLLK~LEe----pp~~~~~IL~t~~~~~llpti~SRc~-~i~l~~l~~~~i~~~L~~~~~----~~~~~~~ 221 (365)
T PRK07471 154 ---NANAANALLKVLEE----PPARSLFLLVSHAPARLLPTIRSRCR-KLRLRPLAPEDVIDALAAAGP----DLPDDPR 221 (365)
T ss_pred ---CHHHHHHHHHHHhc----CCCCeEEEEEECCchhchHHhhccce-EEECCCCCHHHHHHHHHHhcc----cCCHHHH
Confidence 34666788888874 33446777788888999999999997 699999999999888877532 2234455
Q ss_pred HHHHHHcCCCCHHHHHHHHH
Q 011393 409 ERLVRETEGYSGSDLQALCE 428 (487)
Q Consensus 409 ~~La~~t~G~s~~dL~~lv~ 428 (487)
..++..+.| ++.....+++
T Consensus 222 ~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 222 AALAALAEG-SVGRALRLAG 240 (365)
T ss_pred HHHHHHcCC-CHHHHHHHhc
Confidence 677888776 5555555544
No 139
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.1e-13 Score=149.49 Aligned_cols=207 Identities=22% Similarity=0.287 Sum_probs=151.7
Q ss_pred cccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CeEEEEecCccchh---
Q 011393 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSASSLTSK--- 288 (487)
Q Consensus 215 ~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~---~~~~~v~~~~l~~~--- 288 (487)
-..|+|++++...+.+.+... +.-+....+|...+||.||+|+|||-||+++|..+. ..++.+++++++.+
T Consensus 490 ~~rViGQd~AV~avs~aIrra---RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRA---RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred hcceeChHHHHHHHHHHHHHH---hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence 346899999999999988532 222223356667889999999999999999999986 78999999987643
Q ss_pred ---------ccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC-CCCC------C
Q 011393 289 ---------WVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT-SNPN------D 352 (487)
Q Consensus 289 ---------~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~------~ 352 (487)
|+|..+ -..+-+..+.+..|||++|||+.- +..+++-||+.||... .... .
T Consensus 567 SrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKA-----------HpdV~nilLQVlDdGrLTD~~Gr~VdFr 633 (786)
T COG0542 567 SRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKA-----------HPDVFNLLLQVLDDGRLTDGQGRTVDFR 633 (786)
T ss_pred HHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhc-----------CHHHHHHHHHHhcCCeeecCCCCEEecc
Confidence 565544 123444455555689999999865 6789999999997421 1111 2
Q ss_pred cEEEEEecCCCC----------------------------CCCHHHHcccccEEEccCCCHHHHHHHHHHHhc-------
Q 011393 353 LVIVMGATNKPQ----------------------------ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK------- 397 (487)
Q Consensus 353 ~vivI~ttn~~~----------------------------~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~------- 397 (487)
+.+||.|+|.-. ...|+|+.|++.+|.|...+.+...+|+...+.
T Consensus 634 NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~ 713 (786)
T COG0542 634 NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLA 713 (786)
T ss_pred eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 568888886421 125888899999999999999999998887664
Q ss_pred --cCCCCCChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHh
Q 011393 398 --GQAFSLPGGDLERLVRETE--GYSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 398 --~~~~~l~~~~l~~La~~t~--G~s~~dL~~lv~~A~~~a~~~ 437 (487)
+..+.+++...+.|+.... .|.++-|+.+++.-....+.+
T Consensus 714 ~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~ 757 (786)
T COG0542 714 ERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLAD 757 (786)
T ss_pred hCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHH
Confidence 2344568889999998854 466788888888766655443
No 140
>PRK09087 hypothetical protein; Validated
Probab=99.58 E-value=2.8e-14 Score=136.16 Aligned_cols=199 Identities=16% Similarity=0.173 Sum_probs=130.0
Q ss_pred CCCCcccccC---hHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch
Q 011393 211 PSVKWEDVAG---LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (487)
Q Consensus 211 ~~~~~~di~G---~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~ 287 (487)
+..+|++++. ...+...+.++. ..+.+.++||||+|+|||||++++++..+..+ ++...+..
T Consensus 16 ~~~~~~~Fi~~~~N~~a~~~l~~~~-------------~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~ 80 (226)
T PRK09087 16 PAYGRDDLLVTESNRAAVSLVDHWP-------------NWPSPVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGS 80 (226)
T ss_pred CCCChhceeecCchHHHHHHHHhcc-------------cCCCCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcch
Confidence 4568999774 333444333221 12234599999999999999999999876653 33322221
Q ss_pred hccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC--C
Q 011393 288 KWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ--E 365 (487)
Q Consensus 288 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~--~ 365 (487)
.++.... ..+|+|||+|.+... . .+|+..++.+... +..+||+++..|. .
T Consensus 81 -----------~~~~~~~---~~~l~iDDi~~~~~~---------~---~~lf~l~n~~~~~--g~~ilits~~~p~~~~ 132 (226)
T PRK09087 81 -----------DAANAAA---EGPVLIEDIDAGGFD---------E---TGLFHLINSVRQA--GTSLLMTSRLWPSSWN 132 (226)
T ss_pred -----------HHHHhhh---cCeEEEECCCCCCCC---------H---HHHHHHHHHHHhC--CCeEEEECCCChHHhc
Confidence 1111111 148999999976211 1 2233333333222 2356666665554 3
Q ss_pred C-CHHHHcccc--cEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccch
Q 011393 366 L-DDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNI 442 (487)
Q Consensus 366 l-d~al~~Rf~--~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~ 442 (487)
. .+.+++||. ..+.+..|+.+.|.++++..+...++.++++.++.|+++..| +.+.+..++......++..
T Consensus 133 ~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~----- 206 (226)
T PRK09087 133 VKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER----- 206 (226)
T ss_pred cccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh-----
Confidence 3 688999985 679999999999999999999999999999999999999875 5555555555443333222
Q ss_pred hccccccCCCCcHHHHHHHHHhh
Q 011393 443 LTVKANQLRPLRYEDFQKAMAVI 465 (487)
Q Consensus 443 ~~~~~~~~~~l~~~df~~al~~~ 465 (487)
.++||...++++++.+
T Consensus 207 -------~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 207 -------KSRITRALAAEVLNEM 222 (226)
T ss_pred -------CCCCCHHHHHHHHHhh
Confidence 2568888888888754
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.58 E-value=6e-14 Score=155.77 Aligned_cols=206 Identities=21% Similarity=0.264 Sum_probs=146.9
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchh-------
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK------- 288 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~------- 288 (487)
..|+|++++++.|.+.+..... .+....+|...+||+||||||||++|+++|..++.+++.++++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~---g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRA---GLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhc---CCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 4588999999988887753211 011122444568999999999999999999999999999998876431
Q ss_pred -----ccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC--C-----CCCcEEE
Q 011393 289 -----WVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS--N-----PNDLVIV 356 (487)
Q Consensus 289 -----~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~-----~~~~viv 356 (487)
|+|..+ ...+....+....+||||||||.+ ...+.+.|+..|+...- . .-.+++|
T Consensus 531 g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ii 597 (731)
T TIGR02639 531 GAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNGRKADFRNVIL 597 (731)
T ss_pred cCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCCcccCCCCCEE
Confidence 222211 122334444556689999999987 34567778887764311 0 0134778
Q ss_pred EEecCCCC-------------------------CCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc-------C--CCC
Q 011393 357 MGATNKPQ-------------------------ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG-------Q--AFS 402 (487)
Q Consensus 357 I~ttn~~~-------------------------~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~-------~--~~~ 402 (487)
|+|+|... .+.|.++.||+..+.|.+.+.++..+|++..+.+ . .+.
T Consensus 598 i~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~ 677 (731)
T TIGR02639 598 IMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLE 677 (731)
T ss_pred EECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 88887631 2478899999999999999999999999887752 2 356
Q ss_pred CChhhHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHh
Q 011393 403 LPGGDLERLVRE--TEGYSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 403 l~~~~l~~La~~--t~G~s~~dL~~lv~~A~~~a~~~ 437 (487)
+++..++.|+.. ...+.++.|+.+++.....++.+
T Consensus 678 i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 678 LTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred eCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 688999999986 34566889999998877776554
No 142
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=3.1e-13 Score=136.87 Aligned_cols=191 Identities=18% Similarity=0.163 Sum_probs=131.4
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe-------EEEE-e
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------FFNV-S 281 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------~~~v-~ 281 (487)
..|..+++|+|++.+++.|...+. .++.++.+||+||+|+|||++|+.+|+.+.+. .... .
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~-----------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR-----------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH-----------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 357899999999999999999884 33456689999999999999999999987551 1000 1
Q ss_pred c---C-----------ccc---hhc--------cchhHHHHHHHHHHH----HhcCCcEEEechhhhhhccCCCCcchHH
Q 011393 282 A---S-----------SLT---SKW--------VGEGEKLVRTLFMVA----ISRQPCVIFIDEIDSIMSTRMANENDAS 332 (487)
Q Consensus 282 ~---~-----------~l~---~~~--------~g~~~~~i~~~f~~a----~~~~p~Il~IDEiD~l~~~~~~~~~~~~ 332 (487)
| . ++. ..+ ..-+-..++.+.... ......|++|||+|.| .
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----------~ 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----------N 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------C
Confidence 1 0 000 000 000112333333322 2234569999999998 3
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHH
Q 011393 333 RRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLV 412 (487)
Q Consensus 333 ~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La 412 (487)
....+.||..++. +..++++|..|+.+..+.+.+++||. .+.+++|+.++...++.......+ +++..+..++
T Consensus 155 ~~aanaLLk~LEE----pp~~~~fiLit~~~~~llptIrSRc~-~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~ 227 (351)
T PRK09112 155 RNAANAILKTLEE----PPARALFILISHSSGRLLPTIRSRCQ-PISLKPLDDDELKKALSHLGSSQG--SDGEITEALL 227 (351)
T ss_pred HHHHHHHHHHHhc----CCCCceEEEEECChhhccHHHHhhcc-EEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHH
Confidence 4556778888874 23345566667778999999999996 899999999999999987543322 5577788888
Q ss_pred HHcCCCCHHHHHHHHHHH
Q 011393 413 RETEGYSGSDLQALCEEA 430 (487)
Q Consensus 413 ~~t~G~s~~dL~~lv~~A 430 (487)
..+.| +++....++...
T Consensus 228 ~~s~G-~pr~Al~ll~~~ 244 (351)
T PRK09112 228 QRSKG-SVRKALLLLNYG 244 (351)
T ss_pred HHcCC-CHHHHHHHHhcC
Confidence 88877 565555555443
No 143
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=3.2e-13 Score=135.61 Aligned_cols=170 Identities=16% Similarity=0.237 Sum_probs=122.7
Q ss_pred CcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe--------EEEEecCcc
Q 011393 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--------FFNVSASSL 285 (487)
Q Consensus 214 ~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~--------~~~v~~~~l 285 (487)
+|++|+|++.+++.|...+. .++.++.+||+||+|+|||++|+++|+.+.+. ++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 69999999999999998883 33456788999999999999999999986432 23332210
Q ss_pred chhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 011393 286 TSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 361 (487)
Q Consensus 286 ~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn 361 (487)
+.. ..-..++.+.+.+. .....|++||++|.+ .....+.|+..++. ++..+++|.+|+
T Consensus 70 -~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LEe----pp~~t~~il~~~ 131 (313)
T PRK05564 70 -KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIEE----PPKGVFIILLCE 131 (313)
T ss_pred -CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhcC----CCCCeEEEEEeC
Confidence 111 12234555554332 234469999999988 34566788888883 444566666667
Q ss_pred CCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCC
Q 011393 362 KPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGY 418 (487)
Q Consensus 362 ~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~ 418 (487)
.++.+.+++++||. .+.|+.|+.++....+...+. .+++..++.++..+.|-
T Consensus 132 ~~~~ll~TI~SRc~-~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~ 183 (313)
T PRK05564 132 NLEQILDTIKSRCQ-IYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGI 183 (313)
T ss_pred ChHhCcHHHHhhce-eeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCC
Confidence 88999999999997 799999999988777766543 24677788888888763
No 144
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.56 E-value=2.3e-13 Score=133.06 Aligned_cols=135 Identities=24% Similarity=0.355 Sum_probs=93.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc------cchhccchhHHH-HHH-------------------HHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS------LTSKWVGEGEKL-VRT-------------------LFM 302 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~------l~~~~~g~~~~~-i~~-------------------~f~ 302 (487)
..++||+||||||||++|+++|+.++.+++.++|.. +.+.+.+..... +.. .+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 467999999999999999999999999999998754 222222211111 111 111
Q ss_pred HHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC----C---C-----CCCcEEEEEecCCCC-----C
Q 011393 303 VAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT----S---N-----PNDLVIVMGATNKPQ-----E 365 (487)
Q Consensus 303 ~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----~---~-----~~~~vivI~ttn~~~-----~ 365 (487)
.|. ..+.+|+|||+|.+ ...+++.|+..|+... . . ....+.||+|+|... .
T Consensus 101 ~A~-~~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 101 LAV-REGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHH-HcCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 222 24569999999987 2345555666664311 0 0 112467899999763 5
Q ss_pred CCHHHHcccccEEEccCCCHHHHHHHHHHHh
Q 011393 366 LDDAVLRRLVKRIYVPLPDENVRRLLLKHKL 396 (487)
Q Consensus 366 ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l 396 (487)
+++++++||. .+.++.|+.++..+|+..++
T Consensus 169 l~~aL~~R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 169 TQDALLDRLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ccHHHHhhcE-EEECCCCCHHHHHHHHHHhh
Confidence 6899999996 79999999999999998875
No 145
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.55 E-value=1.7e-13 Score=143.93 Aligned_cols=213 Identities=19% Similarity=0.220 Sum_probs=143.2
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccC------h-----------hhhhc----c-CCCCceeEEeCCCCCcH
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKR------R-----------DLFTG----L-RRPARGLLLFGPPGNGK 262 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~------~-----------~~~~~----~-~~~~~~iLL~GppGtGK 262 (487)
-||++|.+..|.|+.|-+.+-+.+..|+..+-.. . +.+.. . +++.+-+||+||||-||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 5999999999999999999988888887543110 1 11110 1 23345678999999999
Q ss_pred HHHHHHHHHHcCCeEEEEecCccchhccchhHHHHHHHHHHH----HhcCCcEEEechhhhhhccCCCCcchHHHHHHHH
Q 011393 263 TMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVA----ISRQPCVIFIDEIDSIMSTRMANENDASRRLKSE 338 (487)
Q Consensus 263 T~la~aiA~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ 338 (487)
||||+.+|++.|..+++|++++-.+.-. ....+..+...- ...+|..|+|||||.-. ...+..
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt~~~--v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-----------~~~Vdv 406 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERTAPM--VKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-----------RAAVDV 406 (877)
T ss_pred hHHHHHHHHhcCceEEEecccccccHHH--HHHHHHHHHhhccccccCCCcceEEEecccCCc-----------HHHHHH
Confidence 9999999999999999999998654211 122222222111 12578999999998531 122222
Q ss_pred HHHHhc-------CCCCCCC----------CcEEEEEecCCCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccC
Q 011393 339 FLIQFD-------GVTSNPN----------DLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQ 399 (487)
Q Consensus 339 ll~~l~-------~~~~~~~----------~~vivI~ttn~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~ 399 (487)
++..+. |-..... -.--|||.||... -|+|+. -|...+.|..|......+-|+.++..+
T Consensus 407 ilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE 484 (877)
T KOG1969|consen 407 ILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHRE 484 (877)
T ss_pred HHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhhh
Confidence 222221 1111000 0124677888543 466654 577889999999988889999999999
Q ss_pred CCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Q 011393 400 AFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIR 436 (487)
Q Consensus 400 ~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~ 436 (487)
++..+...+..|++.|++ ||+..++...+.+.+
T Consensus 485 ~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 485 NMRADSKALNALCELTQN----DIRSCINTLQFLASN 517 (877)
T ss_pred cCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHh
Confidence 999888899999998875 677666665555544
No 146
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.53 E-value=6e-13 Score=123.41 Aligned_cols=196 Identities=17% Similarity=0.262 Sum_probs=144.6
Q ss_pred cCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCc
Q 011393 208 DRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (487)
Q Consensus 208 ~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~ 284 (487)
..++++.+.+|+|.+.+++.|.+--..+ . .+.|..+|||||..|||||+|++|+-++. +..+++|+..+
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F-------~-~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQF-------A-EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHH-------H-cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 3456799999999999999987655321 1 24677899999999999999999998875 66788998877
Q ss_pred cchhccchhHHHHHHHHHHHHh-cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 011393 285 LTSKWVGEGEKLVRTLFMVAIS-RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 363 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~ 363 (487)
+.. +-.+++..+. ...-|||+||+- + +........|-..|+|-....+.+|+|.+|+|+.
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLS-F---------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLS-F---------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCC-C---------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 643 3344554443 345799999972 1 1222334456667788777778899999999988
Q ss_pred CCCCH----------------------HHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHH----HHHcCC
Q 011393 364 QELDD----------------------AVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERL----VRETEG 417 (487)
Q Consensus 364 ~~ld~----------------------al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~L----a~~t~G 417 (487)
+.++. .+-.||..-+.|+.++.++-..|+.+++++.++.++++.++.= |..-.|
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~ 264 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGG 264 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 76641 2344999999999999999999999999999999887665533 334456
Q ss_pred CCHHHHHHHHHHH
Q 011393 418 YSGSDLQALCEEA 430 (487)
Q Consensus 418 ~s~~dL~~lv~~A 430 (487)
-||+--.+.++..
T Consensus 265 RSGR~A~QF~~~~ 277 (287)
T COG2607 265 RSGRVAWQFIRDL 277 (287)
T ss_pred CccHhHHHHHHHH
Confidence 7777665555544
No 147
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.52 E-value=8.9e-13 Score=132.48 Aligned_cols=162 Identities=19% Similarity=0.330 Sum_probs=105.7
Q ss_pred CCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC-------CeEEEEecC
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-------ATFFNVSAS 283 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~-------~~~~~v~~~ 283 (487)
+...|.+|+|++++|.+|.-.++.| ...++||.||+|||||++|++++..+. .+|. ..+.
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCC
Confidence 4568999999999999998877543 235899999999999999999977642 2222 0000
Q ss_pred -------ccchh---------------c----cchhHHH------HHHHHHHHH---------hcCCcEEEechhhhhhc
Q 011393 284 -------SLTSK---------------W----VGEGEKL------VRTLFMVAI---------SRQPCVIFIDEIDSIMS 322 (487)
Q Consensus 284 -------~l~~~---------------~----~g~~~~~------i~~~f~~a~---------~~~p~Il~IDEiD~l~~ 322 (487)
.+... + .+.++.. +...+.... ....++|||||++.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL-- 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL-- 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC--
Confidence 00000 0 0111111 111111110 113469999999998
Q ss_pred cCCCCcchHHHHHHHHHHHHhcC---------CCCCCCCcEEEEEecCCCC-CCCHHHHcccccEEEccCCC-HHHHHHH
Q 011393 323 TRMANENDASRRLKSEFLIQFDG---------VTSNPNDLVIVMGATNKPQ-ELDDAVLRRLVKRIYVPLPD-ENVRRLL 391 (487)
Q Consensus 323 ~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~vivI~ttn~~~-~ld~al~~Rf~~~i~i~~Pd-~~~r~~i 391 (487)
...++..|+..|+. .....+.++++|+|.|..+ .+.++++.||...+.+..|+ .+.+.+|
T Consensus 157 ---------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~i 227 (350)
T CHL00081 157 ---------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKI 227 (350)
T ss_pred ---------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHH
Confidence 34555666666642 2212234688888888655 68999999999999999997 5899999
Q ss_pred HHHHh
Q 011393 392 LKHKL 396 (487)
Q Consensus 392 l~~~l 396 (487)
++...
T Consensus 228 l~~~~ 232 (350)
T CHL00081 228 VEQRT 232 (350)
T ss_pred HHhhh
Confidence 88753
No 148
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.52 E-value=3e-12 Score=124.90 Aligned_cols=146 Identities=21% Similarity=0.230 Sum_probs=101.5
Q ss_pred CcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEec-----------CCCCCCCHHHHcccccE
Q 011393 309 PCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT-----------NKPQELDDAVLRRLVKR 377 (487)
Q Consensus 309 p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~tt-----------n~~~~ld~al~~Rf~~~ 377 (487)
|.||||||+|.| .-+.+.-|-..|+.- -.+++|++|. ..|+-++..+++|+. .
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlEse----~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRll-I 355 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALESE----LAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLL-I 355 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhhcc----cCcEEEEEcCCceeeecccCCcCCCCCCHhhhhhee-E
Confidence 678999999887 233344444445422 2235555442 246788999999987 6
Q ss_pred EEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHH
Q 011393 378 IYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYED 457 (487)
Q Consensus 378 i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~d 457 (487)
|...+++.++.++|++..+...++.++++.++.|+....--|-+.--+|+.-|...|-++- ...+..+|
T Consensus 356 I~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg-----------~~~V~~~d 424 (450)
T COG1224 356 ISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG-----------SKRVEVED 424 (450)
T ss_pred EecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC-----------CCeeehhH
Confidence 8888899999999999999999999999999999998776666666677776666665542 23477888
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHH
Q 011393 458 FQKAMAVIRPSLNKSKWEELEQWNRE 483 (487)
Q Consensus 458 f~~al~~~~ps~s~~~i~~~~~w~~~ 483 (487)
+..|..-+... +...+-+++|...
T Consensus 425 Ve~a~~lF~D~--krSv~~v~~~~~~ 448 (450)
T COG1224 425 VERAKELFLDV--KRSVEYVEKYEGL 448 (450)
T ss_pred HHHHHHHHhhH--HHHHHHHHHHHhh
Confidence 88887765431 2233444455443
No 149
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.50 E-value=3.8e-12 Score=120.28 Aligned_cols=186 Identities=20% Similarity=0.296 Sum_probs=141.3
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-C--C------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-Q--A------ 275 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-~--~------ 275 (487)
-|+++|++.+++.+.+.++....|+.... .....|+|+|||+|+||-|.+.++-+++ | .
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~ 69 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSS------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIE 69 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcc------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeee
Confidence 38999999999999999999999987663 1223589999999999999999999885 2 1
Q ss_pred --eE------------------EEEecCccchhccch-hHHHHHHHHHHHHhcC---------CcEEEechhhhhhccCC
Q 011393 276 --TF------------------FNVSASSLTSKWVGE-GEKLVRTLFMVAISRQ---------PCVIFIDEIDSIMSTRM 325 (487)
Q Consensus 276 --~~------------------~~v~~~~l~~~~~g~-~~~~i~~~f~~a~~~~---------p~Il~IDEiD~l~~~~~ 325 (487)
.| +++++++ .|. .+-.+++++......+ -.|++|-|+|.|
T Consensus 70 ~~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L----- 139 (351)
T KOG2035|consen 70 TRTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL----- 139 (351)
T ss_pred eEEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----
Confidence 11 1222222 222 2233444443332222 248999999998
Q ss_pred CCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCCh
Q 011393 326 ANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPG 405 (487)
Q Consensus 326 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~ 405 (487)
.+..+..|-..|+.... ++.+|..+|....+-+++++||. .+.+|.|+.++...++...+++.++.++.
T Consensus 140 ------T~dAQ~aLRRTMEkYs~----~~RlIl~cns~SriIepIrSRCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~ 208 (351)
T KOG2035|consen 140 ------TRDAQHALRRTMEKYSS----NCRLILVCNSTSRIIEPIRSRCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPK 208 (351)
T ss_pred ------hHHHHHHHHHHHHHHhc----CceEEEEecCcccchhHHhhhee-EEeCCCCCHHHHHHHHHHHHHHhcccCcH
Confidence 45667777777876543 36777889999999999999998 69999999999999999999999999999
Q ss_pred hhHHHHHHHcCCCCHHHH
Q 011393 406 GDLERLVRETEGYSGSDL 423 (487)
Q Consensus 406 ~~l~~La~~t~G~s~~dL 423 (487)
+.+.++|+.++|--.+.|
T Consensus 209 ~~l~rIa~kS~~nLRrAl 226 (351)
T KOG2035|consen 209 ELLKRIAEKSNRNLRRAL 226 (351)
T ss_pred HHHHHHHHHhcccHHHHH
Confidence 999999999887544433
No 150
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.50 E-value=8.6e-13 Score=148.70 Aligned_cols=207 Identities=19% Similarity=0.268 Sum_probs=146.3
Q ss_pred cccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh---
Q 011393 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK--- 288 (487)
Q Consensus 215 ~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~--- 288 (487)
...|+|++.+++.+.+.+...... .....+|...+||+||+|||||++|+++|..+ +.+++.++++++...
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~g---l~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAG---LSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhcc---CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 356999999999999988632110 01123455679999999999999999999986 568999998776432
Q ss_pred ---------ccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC-CCC------CC
Q 011393 289 ---------WVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT-SNP------ND 352 (487)
Q Consensus 289 ---------~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~------~~ 352 (487)
|+|..+ ...+....+....+|||||||+.+ ...+++.|+..|+... ... -.
T Consensus 641 ~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka-----------~~~v~~~Ll~~l~~g~l~d~~g~~vd~r 707 (852)
T TIGR03346 641 ARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKA-----------HPDVFNVLLQVLDDGRLTDGQGRTVDFR 707 (852)
T ss_pred HHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccC-----------CHHHHHHHHHHHhcCceecCCCeEEecC
Confidence 122211 112333344455579999999977 4566777777775321 110 13
Q ss_pred cEEEEEecCCCCC-------------------------CCHHHHcccccEEEccCCCHHHHHHHHHHHhc-------cC-
Q 011393 353 LVIVMGATNKPQE-------------------------LDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK-------GQ- 399 (487)
Q Consensus 353 ~vivI~ttn~~~~-------------------------ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~-------~~- 399 (487)
+++||+|||.... +.|.|+.|++..+.|.+++.+....|+...+. ..
T Consensus 708 n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~ 787 (852)
T TIGR03346 708 NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERK 787 (852)
T ss_pred CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4678889887321 34778889999999999999999988877654 22
Q ss_pred -CCCCChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHh
Q 011393 400 -AFSLPGGDLERLVRETE--GYSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 400 -~~~l~~~~l~~La~~t~--G~s~~dL~~lv~~A~~~a~~~ 437 (487)
.+.+++..++.|+...+ .+..+.|+.+++..+..++.+
T Consensus 788 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 788 ITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred CeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 35678999999999855 678899999999988877665
No 151
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.48 E-value=8.5e-13 Score=147.85 Aligned_cols=205 Identities=21% Similarity=0.292 Sum_probs=142.1
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh----
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK---- 288 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~---- 288 (487)
..|+|++.+++.+.+.+...... .....+|...+||+||||||||++|+++|..+ ...++.++++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g---l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG---LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhc
Confidence 46899999999999988643211 01112333458999999999999999999987 457888888765322
Q ss_pred --------ccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC-CCC------CCc
Q 011393 289 --------WVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT-SNP------NDL 353 (487)
Q Consensus 289 --------~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~------~~~ 353 (487)
|+|..+.- .+....+....+||+|||||.. ...+.+.|+..++... ... -.+
T Consensus 643 ~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n 709 (852)
T TIGR03345 643 RLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQVFDKGVMEDGEGREIDFKN 709 (852)
T ss_pred cccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHHhhcceeecCCCcEEeccc
Confidence 44432211 2234445567799999999876 3456667777775332 110 135
Q ss_pred EEEEEecCCCC-----------------------------CCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc------
Q 011393 354 VIVMGATNKPQ-----------------------------ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG------ 398 (487)
Q Consensus 354 vivI~ttn~~~-----------------------------~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~------ 398 (487)
.+||.|||... .+.|+|++|++ .|.|.+.+.++...|+...+..
T Consensus 710 ~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~ 788 (852)
T TIGR03345 710 TVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLK 788 (852)
T ss_pred cEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78888887421 14578888997 7899999999999988776642
Q ss_pred --CC--CCCChhhHHHHHHHcCC--CCHHHHHHHHHHHHHHhHHh
Q 011393 399 --QA--FSLPGGDLERLVRETEG--YSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 399 --~~--~~l~~~~l~~La~~t~G--~s~~dL~~lv~~A~~~a~~~ 437 (487)
.+ +.+++..++.|+....+ |-++.|..+++.-...++.+
T Consensus 789 ~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 789 ENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 13 45688999999998754 56889999988877666554
No 152
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.48 E-value=9.5e-13 Score=115.45 Aligned_cols=139 Identities=43% Similarity=0.614 Sum_probs=92.2
Q ss_pred ChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhccchhHHH
Q 011393 220 GLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGEGEKL 296 (487)
Q Consensus 220 G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~g~~~~~ 296 (487)
|.+.+.+.+...+.. ....+++|+||||||||++++.+++.+ +.+++.+++..............
T Consensus 2 ~~~~~~~~i~~~~~~------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALEL------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 556666777666631 235689999999999999999999998 88999999877655433222111
Q ss_pred ---HHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCC--CCCcEEEEEecCCCC--CCCHH
Q 011393 297 ---VRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN--PNDLVIVMGATNKPQ--ELDDA 369 (487)
Q Consensus 297 ---i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~vivI~ttn~~~--~ld~a 369 (487)
....+.......+.+|+|||++.+. ......++..+...... ....+.+|++++... .+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~ 138 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDEIDSLS-----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRA 138 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeChhhhh-----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChh
Confidence 1222333445578999999999871 12223344444333211 123477888887776 78899
Q ss_pred HHcccccEEEcc
Q 011393 370 VLRRLVKRIYVP 381 (487)
Q Consensus 370 l~~Rf~~~i~i~ 381 (487)
+.+||..++.++
T Consensus 139 ~~~r~~~~i~~~ 150 (151)
T cd00009 139 LYDRLDIRIVIP 150 (151)
T ss_pred HHhhhccEeecC
Confidence 999998777765
No 153
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.47 E-value=2.7e-12 Score=129.03 Aligned_cols=156 Identities=19% Similarity=0.299 Sum_probs=101.2
Q ss_pred CcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-------CCeEE--------
Q 011393 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-------QATFF-------- 278 (487)
Q Consensus 214 ~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-------~~~~~-------- 278 (487)
.|..|+|++++|..|.-.+..| ...+++|.|+||+|||+++++++..+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4889999999999987666432 23579999999999999999999875 22221
Q ss_pred -EEec-------------------Cccch-----hccchhH--HH--------HHHHHHHHHhcCCcEEEechhhhhhcc
Q 011393 279 -NVSA-------------------SSLTS-----KWVGEGE--KL--------VRTLFMVAISRQPCVIFIDEIDSIMST 323 (487)
Q Consensus 279 -~v~~-------------------~~l~~-----~~~g~~~--~~--------i~~~f~~a~~~~p~Il~IDEiD~l~~~ 323 (487)
..+| .++.. ...|... .. -..++. .....+|||||++.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~---~A~~GvL~lDEi~~L--- 143 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLA---RANRGILYIDEVNLL--- 143 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcce---eccCCEEEecChHhC---
Confidence 0000 01110 1222110 00 001111 123479999999988
Q ss_pred CCCCcchHHHHHHHHHHHHhcCC---------CCCCCCcEEEEEecCCCC-CCCHHHHcccccEEEccCCCH-HHHHHHH
Q 011393 324 RMANENDASRRLKSEFLIQFDGV---------TSNPNDLVIVMGATNKPQ-ELDDAVLRRLVKRIYVPLPDE-NVRRLLL 392 (487)
Q Consensus 324 ~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~vivI~ttn~~~-~ld~al~~Rf~~~i~i~~Pd~-~~r~~il 392 (487)
...++..|+..|+.. ......++++|++.|..+ .+.++++.||...+.++.|.. ++|.+|+
T Consensus 144 --------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 144 --------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIV 215 (337)
T ss_pred --------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHH
Confidence 345566666666421 111234678888888654 689999999999999999876 8888888
Q ss_pred HHH
Q 011393 393 KHK 395 (487)
Q Consensus 393 ~~~ 395 (487)
+..
T Consensus 216 ~~~ 218 (337)
T TIGR02030 216 ERR 218 (337)
T ss_pred Hhh
Confidence 774
No 154
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.47 E-value=5e-12 Score=126.37 Aligned_cols=183 Identities=16% Similarity=0.151 Sum_probs=125.1
Q ss_pred CcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeE----------EEEecC
Q 011393 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATF----------FNVSAS 283 (487)
Q Consensus 214 ~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~----------~~v~~~ 283 (487)
.|++|+|++.+++.|...+. .++.++++||+||+|+||+++|.++|+.+-+.- ...+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~-----------~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIK-----------QNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 58999999999999999984 334467899999999999999999999853321 111111
Q ss_pred ccc---------hh-----c---cc--------hhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHH
Q 011393 284 SLT---------SK-----W---VG--------EGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRR 334 (487)
Q Consensus 284 ~l~---------~~-----~---~g--------~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~ 334 (487)
++. ++ + .| -.-..++.+...+. .....|++||++|.| ...
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~~ 139 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NEA 139 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CHH
Confidence 111 00 0 00 00123455544332 234569999999998 345
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHH
Q 011393 335 LKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRE 414 (487)
Q Consensus 335 ~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~ 414 (487)
..+.||..|+. ++ +.++|..|+.++.|-+++++||. .+.|+.|+.++..+++.......+ .+.++..++..
T Consensus 140 aaNaLLK~LEE----Pp-~~~fILi~~~~~~Ll~TI~SRcq-~i~f~~l~~~~~~~~L~~~~~~~~---~~~~~~~l~~~ 210 (314)
T PRK07399 140 AANALLKTLEE----PG-NGTLILIAPSPESLLPTIVSRCQ-IIPFYRLSDEQLEQVLKRLGDEEI---LNINFPELLAL 210 (314)
T ss_pred HHHHHHHHHhC----CC-CCeEEEEECChHhCcHHHHhhce-EEecCCCCHHHHHHHHHHhhcccc---chhHHHHHHHH
Confidence 67889988874 33 34566677789999999999997 699999999999888887643222 12235678888
Q ss_pred cCCCCHHHHHHHHH
Q 011393 415 TEGYSGSDLQALCE 428 (487)
Q Consensus 415 t~G~s~~dL~~lv~ 428 (487)
..| +++....+++
T Consensus 211 a~G-s~~~al~~l~ 223 (314)
T PRK07399 211 AQG-SPGAAIANIE 223 (314)
T ss_pred cCC-CHHHHHHHHH
Confidence 777 5555544544
No 155
>PRK04132 replication factor C small subunit; Provisional
Probab=99.47 E-value=2.5e-12 Score=141.75 Aligned_cols=163 Identities=17% Similarity=0.153 Sum_probs=126.9
Q ss_pred CCCCceeEEeC--CCCCcHHHHHHHHHHHc-----CCeEEEEecCccchhccchhHHHHHHHHHHHHhc------CCcEE
Q 011393 246 RRPARGLLLFG--PPGNGKTMLAKAVASES-----QATFFNVSASSLTSKWVGEGEKLVRTLFMVAISR------QPCVI 312 (487)
Q Consensus 246 ~~~~~~iLL~G--ppGtGKT~la~aiA~~~-----~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~------~p~Il 312 (487)
.-|.-+-+..| |++.||||+|+++|+++ +.+++++++++..+. ..++.++..+... ...|+
T Consensus 561 ~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVv 634 (846)
T PRK04132 561 HVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKII 634 (846)
T ss_pred ccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEE
Confidence 34555667789 99999999999999997 568999999885431 2455554433222 23599
Q ss_pred EechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHH
Q 011393 313 FIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLL 392 (487)
Q Consensus 313 ~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il 392 (487)
||||+|.| ....++.|+..|+. +..++.+|++||.+..+.+++++||. .+.|+.|+.++....+
T Consensus 635 IIDEaD~L-----------t~~AQnALLk~lEe----p~~~~~FILi~N~~~kIi~tIrSRC~-~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 635 FLDEADAL-----------TQDAQQALRRTMEM----FSSNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRL 698 (846)
T ss_pred EEECcccC-----------CHHHHHHHHHHhhC----CCCCeEEEEEeCChhhCchHHhhhce-EEeCCCCCHHHHHHHH
Confidence 99999999 34567788888874 34558899999999999999999997 6999999999999999
Q ss_pred HHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 011393 393 KHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAA 431 (487)
Q Consensus 393 ~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~ 431 (487)
+..+.+.++.++++.+..|+..+.|-.+. .-++++.++
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~-AIn~Lq~~~ 736 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEGDMRR-AINILQAAA 736 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 99998888888999999999999985444 444545444
No 156
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=9.2e-13 Score=142.44 Aligned_cols=197 Identities=20% Similarity=0.305 Sum_probs=150.3
Q ss_pred hhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc--------
Q 011393 202 INTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-------- 273 (487)
Q Consensus 202 ~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-------- 273 (487)
....+....+...++-++|.++.++++.+.+. ++...+-+|.|+||+|||.++..+|.+.
T Consensus 156 y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~ 223 (786)
T COG0542 156 YTRDLTELAREGKLDPVIGRDEEIRRTIQILS------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPES 223 (786)
T ss_pred HhhhhHHHHhcCCCCCCcChHHHHHHHHHHHh------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHH
Confidence 34455666677899999999999999988883 3344678899999999999999999873
Q ss_pred --CCeEEEEecCccc--hhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCC
Q 011393 274 --QATFFNVSASSLT--SKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN 349 (487)
Q Consensus 274 --~~~~~~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 349 (487)
+..++.++.+.+. .+|.|+.+..++.++.......+.||||||+|.+.+....... .-...+-|.-.+.
T Consensus 224 L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~DAaNiLKPaLA----- 296 (786)
T COG0542 224 LKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMDAANLLKPALA----- 296 (786)
T ss_pred HcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccchhhhhHHHHh-----
Confidence 6778888888775 4799999999999999998888999999999999876543221 1112222222222
Q ss_pred CCCcEEEEEecCCC-----CCCCHHHHcccccEEEccCCCHHHHHHHHHHHh----ccCCCCCChhhHHHHHHHcCCCC
Q 011393 350 PNDLVIVMGATNKP-----QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKL----KGQAFSLPGGDLERLVRETEGYS 419 (487)
Q Consensus 350 ~~~~vivI~ttn~~-----~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l----~~~~~~l~~~~l~~La~~t~G~s 419 (487)
.+.+.+||+|... -.-|+||-|||+ .|.+..|+.++-..|++-.- ..+++.+++..+...+..+..|-
T Consensus 297 -RGeL~~IGATT~~EYRk~iEKD~AL~RRFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI 373 (786)
T COG0542 297 -RGELRCIGATTLDEYRKYIEKDAALERRFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYI 373 (786)
T ss_pred -cCCeEEEEeccHHHHHHHhhhchHHHhcCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhc
Confidence 2337788887533 245999999999 59999999999999987643 35778889999988888776554
No 157
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.3e-12 Score=129.04 Aligned_cols=226 Identities=15% Similarity=0.219 Sum_probs=149.2
Q ss_pred ccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe-----EEEEecCccchhcc--
Q 011393 218 VAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-----FFNVSASSLTSKWV-- 290 (487)
Q Consensus 218 i~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-----~~~v~~~~l~~~~~-- 290 (487)
+.+.+..+++|...+.-.+. +..|.++++|||||||||.+++.++.++.-. +++|+|....+.+.
T Consensus 19 l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~ 90 (366)
T COG1474 19 LPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVL 90 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHH
Confidence 88999999999888643221 2234569999999999999999999986433 89999976544321
Q ss_pred -------------chh-HHHHHHHHHHHH-hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEE
Q 011393 291 -------------GEG-EKLVRTLFMVAI-SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVI 355 (487)
Q Consensus 291 -------------g~~-~~~i~~~f~~a~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vi 355 (487)
|.. .+....+++... .....||++||+|.|..... .++-.|+...... ..+|.
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~----~~~v~ 158 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN----KVKVS 158 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc----ceeEE
Confidence 111 122222222222 24567999999999976531 3444444433322 45588
Q ss_pred EEEecCCCC---CCCHHHHcccc-cEEEccCCCHHHHHHHHHHHhcc--CCCCCChhhHHHHHHHcC--CCCHHHHHHHH
Q 011393 356 VMGATNKPQ---ELDDAVLRRLV-KRIYVPLPDENVRRLLLKHKLKG--QAFSLPGGDLERLVRETE--GYSGSDLQALC 427 (487)
Q Consensus 356 vI~ttn~~~---~ld~al~~Rf~-~~i~i~~Pd~~~r~~il~~~l~~--~~~~l~~~~l~~La~~t~--G~s~~dL~~lv 427 (487)
+|+.+|..+ .+++.+.++|. ..|.|++.+.+|...|+...... ....+++..++.+|.... +...+-.-.+|
T Consensus 159 vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 159 IIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred EEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 899888774 67999999876 56899999999999999988763 233456777776665543 22445555778
Q ss_pred HHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhCCCCCHHHH
Q 011393 428 EEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKW 474 (487)
Q Consensus 428 ~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ps~s~~~i 474 (487)
+.|+..|-++.. ..++.++...|...+.+....+.+
T Consensus 239 r~A~eiAe~~~~-----------~~v~~~~v~~a~~~~~~~~~~~~~ 274 (366)
T COG1474 239 RRAGEIAEREGS-----------RKVSEDHVREAQEEIERDVLEEVL 274 (366)
T ss_pred HHHHHHHHhhCC-----------CCcCHHHHHHHHHHhhHHHHHHHH
Confidence 888888866532 346666666665555444444433
No 158
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.46 E-value=1.9e-12 Score=145.44 Aligned_cols=206 Identities=21% Similarity=0.239 Sum_probs=143.0
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh----
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK---- 288 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~---- 288 (487)
+.|+|++.+++.+...+...... .....+|...+||+||+|||||+||+++|+.+ +.+++.++++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~g---l~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVG---LKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhc---ccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 45899999999999888532110 11123444568999999999999999999986 467888888775321
Q ss_pred --------ccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC-CC------CCCc
Q 011393 289 --------WVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT-SN------PNDL 353 (487)
Q Consensus 289 --------~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~------~~~~ 353 (487)
|+|..+ ...+.+..+....+||+|||+|.+ ...+.+.|+..|+... .. .-.+
T Consensus 586 ~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~v~~~~ 652 (821)
T CHL00095 586 KLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRTIDFKN 652 (821)
T ss_pred HhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC-----------CHHHHHHHHHHhccCceecCCCcEEecCc
Confidence 222221 123444444555589999999987 4566777888777421 11 1135
Q ss_pred EEEEEecCCCCC-------------------------------------CCHHHHcccccEEEccCCCHHHHHHHHHHHh
Q 011393 354 VIVMGATNKPQE-------------------------------------LDDAVLRRLVKRIYVPLPDENVRRLLLKHKL 396 (487)
Q Consensus 354 vivI~ttn~~~~-------------------------------------ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l 396 (487)
++||+|+|.... +.|.|+.|++..+.|.+.+.++..+|+...+
T Consensus 653 ~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l 732 (821)
T CHL00095 653 TLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIML 732 (821)
T ss_pred eEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 788888874311 2367888999899999999999999988766
Q ss_pred cc-------C--CCCCChhhHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHh
Q 011393 397 KG-------Q--AFSLPGGDLERLVRE--TEGYSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 397 ~~-------~--~~~l~~~~l~~La~~--t~G~s~~dL~~lv~~A~~~a~~~ 437 (487)
.+ . .+.+++..++.|+.. ...|.++.|+.+++.-...++.+
T Consensus 733 ~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 733 KNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred HHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 52 2 345688899999986 23456788888888777666554
No 159
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=99.46 E-value=1.6e-13 Score=106.66 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 011393 52 GYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQ 120 (487)
Q Consensus 52 ~~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~rae~~k~~ 120 (487)
+|+.+|++++.+||+.|+.|+|++|+.+|++|+++|+.++++++|+..++.++.|+.+|+.|||+++..
T Consensus 1 d~l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE~i~~~ 69 (75)
T cd02677 1 DYLEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRAEEILRL 69 (75)
T ss_pred ChHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999998865
No 160
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=99.46 E-value=2e-13 Score=106.82 Aligned_cols=70 Identities=16% Similarity=0.250 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 011393 54 FELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVSD 123 (487)
Q Consensus 54 ~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~rae~~k~~v~~ 123 (487)
-.+|++++.+||++|+.|+|++|+.+|++||++|+.++++++|+..+..++.++.+|++|||+++..++.
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~~l~~ 72 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKKRLDQ 72 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3679999999999999999999999999999999999999999999999999999999999999999654
No 161
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.45 E-value=2.2e-12 Score=119.88 Aligned_cols=145 Identities=19% Similarity=0.225 Sum_probs=103.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCe------------------------EEEEecCccchhccchhHHHHHHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQAT------------------------FFNVSASSLTSKWVGEGEKLVRTLFM 302 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~------------------------~~~v~~~~l~~~~~g~~~~~i~~~f~ 302 (487)
+.+..+|||||+|+|||++|+.+++.+.+. +..+.... . ......++.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHH
Confidence 445789999999999999999999986442 22222111 0 012244555555
Q ss_pred HHHh----cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEE
Q 011393 303 VAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRI 378 (487)
Q Consensus 303 ~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i 378 (487)
.+.. ....||+|||+|.|. ....+.|+..|+.. +..+++|.+|+.+..+.+++++|+. .+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~-----------~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~~-~~ 150 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN-----------EAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRCQ-VL 150 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC-----------HHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhcE-Ee
Confidence 4432 345699999999982 33456788888642 3345666667777999999999996 79
Q ss_pred EccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCC
Q 011393 379 YVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGY 418 (487)
Q Consensus 379 ~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~ 418 (487)
.++.|+.++...++... + ++++.++.++..+.|.
T Consensus 151 ~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGS 184 (188)
T ss_pred eCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCC
Confidence 99999999988888775 3 5688899999988774
No 162
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.44 E-value=2.4e-12 Score=127.44 Aligned_cols=138 Identities=15% Similarity=0.197 Sum_probs=96.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchh--ccchhH----------HHHHHHHHHHHhcCCcEEEech
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK--WVGEGE----------KLVRTLFMVAISRQPCVIFIDE 316 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~--~~g~~~----------~~i~~~f~~a~~~~p~Il~IDE 316 (487)
.++|||.||||||||++++.+|.+++.+++.+++...... ++|... ......+..|. ..+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEech
Confidence 4679999999999999999999999999999988764433 333311 11112333342 3567899999
Q ss_pred hhhhhccCCCCcchHHHHHHHHHHHHhcC----------CCCCCCCcEEEEEecCCCC------------CCCHHHHccc
Q 011393 317 IDSIMSTRMANENDASRRLKSEFLIQFDG----------VTSNPNDLVIVMGATNKPQ------------ELDDAVLRRL 374 (487)
Q Consensus 317 iD~l~~~~~~~~~~~~~~~~~~ll~~l~~----------~~~~~~~~vivI~ttn~~~------------~ld~al~~Rf 374 (487)
+|..-+ .++..|...++. ..-.+...+.||+|.|... .++.++++||
T Consensus 143 in~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF 211 (327)
T TIGR01650 143 YDAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRW 211 (327)
T ss_pred hhccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhhe
Confidence 998722 233333333331 0111234588999999754 3689999999
Q ss_pred ccEEEccCCCHHHHHHHHHHHhcc
Q 011393 375 VKRIYVPLPDENVRRLLLKHKLKG 398 (487)
Q Consensus 375 ~~~i~i~~Pd~~~r~~il~~~l~~ 398 (487)
...+.+..|+.++-.+|+......
T Consensus 212 ~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 212 SIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred eeEeeCCCCCHHHHHHHHHhhccC
Confidence 977899999999999999876543
No 163
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.44 E-value=1e-12 Score=132.34 Aligned_cols=150 Identities=25% Similarity=0.305 Sum_probs=108.4
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC---------------------
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ--------------------- 274 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~--------------------- 274 (487)
++++|.+.+...+..++... .+.++.+||+||||+|||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~----------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALES----------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhc----------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 36788888888888877521 12334699999999999999999999976
Q ss_pred ---CeEEEEecCccchhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC
Q 011393 275 ---ATFFNVSASSLTSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT 347 (487)
Q Consensus 275 ---~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 347 (487)
..++.+++++..... .....++.+...... ...-||+|||+|.| .....+.++..++
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-----------t~~A~nallk~lE--- 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-----------TEDAANALLKTLE--- 134 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-----------hHHHHHHHHHHhc---
Confidence 467888887765432 123444554443322 23469999999999 3466778888877
Q ss_pred CCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHH
Q 011393 348 SNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLK 393 (487)
Q Consensus 348 ~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~ 393 (487)
.+..+..+|.+||.++.+-+.+++||. .+.|+.|+........+
T Consensus 135 -ep~~~~~~il~~n~~~~il~tI~SRc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 -EPPKNTRFILITNDPSKILPTIRSRCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred -cCCCCeEEEEEcCChhhccchhhhcce-eeecCCchHHHHHHHhh
Confidence 345557888899999999999999998 58887765555444433
No 164
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.44 E-value=4.6e-12 Score=142.39 Aligned_cols=207 Identities=19% Similarity=0.252 Sum_probs=139.6
Q ss_pred cccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh---
Q 011393 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK--- 288 (487)
Q Consensus 215 ~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~--- 288 (487)
.+.|+|++.+++.+...+...... .....+|...+||+||+|||||++|+++|..+ +.+++.++++++...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~g---l~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAG---LSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhc---ccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence 557899999999999988532110 00112333568999999999999999999986 457888998776432
Q ss_pred ---------ccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC-CCC------CC
Q 011393 289 ---------WVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT-SNP------ND 352 (487)
Q Consensus 289 ---------~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~------~~ 352 (487)
|+|..+ -..+....+....+||||||++.+ ...+++.|+..++... ... -.
T Consensus 644 ~~LiG~~pgy~g~~~--~g~l~~~v~~~p~~vLllDEieka-----------~~~v~~~Ll~ile~g~l~d~~gr~vd~r 710 (857)
T PRK10865 644 SRLVGAPPGYVGYEE--GGYLTEAVRRRPYSVILLDEVEKA-----------HPDVFNILLQVLDDGRLTDGQGRTVDFR 710 (857)
T ss_pred HHHhCCCCcccccch--hHHHHHHHHhCCCCeEEEeehhhC-----------CHHHHHHHHHHHhhCceecCCceEEeec
Confidence 111111 011222233344489999999977 3456677777765321 110 12
Q ss_pred cEEEEEecCCC-------------------------CCCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc---------
Q 011393 353 LVIVMGATNKP-------------------------QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG--------- 398 (487)
Q Consensus 353 ~vivI~ttn~~-------------------------~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~--------- 398 (487)
+.+||+|||.. ..+.|+|+.|++..+.|.+++.+....|+..++..
T Consensus 711 n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~g 790 (857)
T PRK10865 711 NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERG 790 (857)
T ss_pred ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45788888863 12457899999988999999999988888776643
Q ss_pred CCCCCChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHh
Q 011393 399 QAFSLPGGDLERLVRETE--GYSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 399 ~~~~l~~~~l~~La~~t~--G~s~~dL~~lv~~A~~~a~~~ 437 (487)
..+.+++..++.|+.... .|.++.|+.+++.-+..++.+
T Consensus 791 i~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~ 831 (857)
T PRK10865 791 YEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQ 831 (857)
T ss_pred CcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHH
Confidence 234568899999988532 345789999988887776554
No 165
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=99.44 E-value=3.1e-13 Score=105.27 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 011393 54 FELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVS 122 (487)
Q Consensus 54 ~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~rae~~k~~v~ 122 (487)
+++|++++++|++.|+.|+|++|+.+|++|+++|+.++++++++..+..++.++.+|++|||+++..+.
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RAE~LK~~l~ 71 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRAEELKALIA 71 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999999999999999999999999999999998853
No 166
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.42 E-value=2e-12 Score=130.34 Aligned_cols=192 Identities=21% Similarity=0.219 Sum_probs=127.4
Q ss_pred ccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhcc----
Q 011393 218 VAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWV---- 290 (487)
Q Consensus 218 i~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~---- 290 (487)
++|.....+.+.+.+.. ......+|||+|++||||+++|++|.... +.+|+.++|..+.....
T Consensus 1 liG~S~~m~~~~~~~~~----------~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSR----------LAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHH----------HhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 46777777777776642 22345679999999999999999997654 57999999987643321
Q ss_pred -chhH-------HHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC-------CCCCCcEE
Q 011393 291 -GEGE-------KLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT-------SNPNDLVI 355 (487)
Q Consensus 291 -g~~~-------~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~vi 355 (487)
|... .....+|+.| ..++|||||||.| ...++..|+..++... ......+.
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 1100 0001123333 4579999999998 3455666666664321 11123477
Q ss_pred EEEecCCC-------CCCCHHHHcccccEEEccCCCHHHHHH----HHHHHhc----c--CC--CCCChhhHHHHHHHcC
Q 011393 356 VMGATNKP-------QELDDAVLRRLVKRIYVPLPDENVRRL----LLKHKLK----G--QA--FSLPGGDLERLVRETE 416 (487)
Q Consensus 356 vI~ttn~~-------~~ld~al~~Rf~~~i~i~~Pd~~~r~~----il~~~l~----~--~~--~~l~~~~l~~La~~t~ 416 (487)
||++|+.. ..+.+.|..||. .+.+..|...+|.+ ++.+++. + .. ..++++.+..|..+.|
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~W 215 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHW 215 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCC
Confidence 88888653 234577777886 35566666665543 4444332 2 22 3578999999999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 011393 417 GYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~~a 434 (487)
..+.++|+++++.++..+
T Consensus 216 PGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 216 PGNVRELKNVVERSVYRH 233 (329)
T ss_pred CchHHHHHHHHHHHHHhC
Confidence 889999999999988764
No 167
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=99.42 E-value=4.5e-13 Score=105.74 Aligned_cols=74 Identities=27% Similarity=0.348 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 011393 51 KGYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVSDR 124 (487)
Q Consensus 51 k~~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~rae~~k~~v~~r 124 (487)
+.++++|++++.+||+.|+.|+|++|+.+|++|+++|+.+++.++++..+..++.++.+|++|||+++..+..|
T Consensus 2 ~~~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~lk~~~~~r 75 (77)
T smart00745 2 RDYLSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEIKKSLLER 75 (77)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999987654
No 168
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.41 E-value=1.8e-12 Score=125.04 Aligned_cols=190 Identities=17% Similarity=0.141 Sum_probs=134.4
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe------EE
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT------FF 278 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~------~~ 278 (487)
.|+++|++-.+.|+++++++...+.++.. .... .++|+|||||||||+...+.|..+-.+ +.
T Consensus 30 pwvekyrP~~l~dv~~~~ei~st~~~~~~-----------~~~l-Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~l 97 (360)
T KOG0990|consen 30 PWVEKYRPPFLGIVIKQEPIWSTENRYSG-----------MPGL-PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLL 97 (360)
T ss_pred CCccCCCCchhhhHhcCCchhhHHHHhcc-----------CCCC-CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHH
Confidence 69999999999999999999999988853 2222 389999999999999999999987553 22
Q ss_pred EEecCccchhccchhHHHHHHHHHHHHh-------cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCC
Q 011393 279 NVSASSLTSKWVGEGEKLVRTLFMVAIS-------RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPN 351 (487)
Q Consensus 279 ~v~~~~l~~~~~g~~~~~i~~~f~~a~~-------~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 351 (487)
.+++++-.+. +- .+.--..|..++. ..+..+++||+|.+ .+..+++|-..+.....
T Consensus 98 elnaSd~rgi--d~-vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRviek~t~--- 160 (360)
T KOG0990|consen 98 ELNASDDRGI--DP-VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVIEKYTA--- 160 (360)
T ss_pred HhhccCccCC--cc-hHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHHHHhcc---
Confidence 3333332221 11 1222234444442 25679999999998 34455555555554432
Q ss_pred CcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHH
Q 011393 352 DLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEE 429 (487)
Q Consensus 352 ~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~ 429 (487)
++.++..+|.+..+.+++++||.+ +.+...+..+-...+.+++.......+++....++..+-| |++..+..
T Consensus 161 -n~rF~ii~n~~~ki~pa~qsRctr-frf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~g----Dmr~a~n~ 232 (360)
T KOG0990|consen 161 -NTRFATISNPPQKIHPAQQSRCTR-FRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVG----DMRVALNY 232 (360)
T ss_pred -ceEEEEeccChhhcCchhhccccc-CCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHH----HHHHHHHH
Confidence 345556689999999999999995 6777777777788888888888888888877777776544 45444443
No 169
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.41 E-value=6.1e-12 Score=137.40 Aligned_cols=156 Identities=21% Similarity=0.333 Sum_probs=104.8
Q ss_pred CcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc--------------------
Q 011393 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-------------------- 273 (487)
Q Consensus 214 ~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-------------------- 273 (487)
.|.+|+|++.++..|.-..+.+ ...+|||+||||||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4889999999998887666422 12479999999999999999999887
Q ss_pred ---------------CCeEEEEecCccchhccchhH--HHHH--------HHHHHHHhcCCcEEEechhhhhhccCCCCc
Q 011393 274 ---------------QATFFNVSASSLTSKWVGEGE--KLVR--------TLFMVAISRQPCVIFIDEIDSIMSTRMANE 328 (487)
Q Consensus 274 ---------------~~~~~~v~~~~l~~~~~g~~~--~~i~--------~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~ 328 (487)
..+|+.+.+.......+|... ..+. .++. ....+|||||||+.|
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~---~A~~GiL~lDEi~~l-------- 138 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLA---EAHRGILYIDEVNLL-------- 138 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCccee---ecCCCeEEeChhhhC--------
Confidence 246666655544333333211 1010 0111 113369999999998
Q ss_pred chHHHHHHHHHHHHhcCC---------CCCCCCcEEEEEecCCC-CCCCHHHHcccccEEEccCCC-HHHHHHHHHHH
Q 011393 329 NDASRRLKSEFLIQFDGV---------TSNPNDLVIVMGATNKP-QELDDAVLRRLVKRIYVPLPD-ENVRRLLLKHK 395 (487)
Q Consensus 329 ~~~~~~~~~~ll~~l~~~---------~~~~~~~vivI~ttn~~-~~ld~al~~Rf~~~i~i~~Pd-~~~r~~il~~~ 395 (487)
...++..|+..|+.- ......+++||+|+|.. ..+.++|++||...+.++.+. .+++.+++...
T Consensus 139 ---~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 139 ---DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred ---CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHH
Confidence 345667777776522 11112458889988854 468999999999888888764 57777777653
No 170
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=2e-11 Score=123.33 Aligned_cols=175 Identities=17% Similarity=0.138 Sum_probs=120.4
Q ss_pred CcccccC-hHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe----------------
Q 011393 214 KWEDVAG-LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT---------------- 276 (487)
Q Consensus 214 ~~~di~G-~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~---------------- 276 (487)
.|++|+| ++.+++.|...+. .++.++.+||+||+|+||+++|+++|+.+.+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5889999 8899999998884 34556788999999999999999999986432
Q ss_pred --------EEEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc
Q 011393 277 --------FFNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFD 344 (487)
Q Consensus 277 --------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~ 344 (487)
+..+... +.. ..-..++.+.+... .....|++|||+|.+ .....+.||..|+
T Consensus 72 ~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK~LE 135 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLKFLE 135 (329)
T ss_pred HhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHHHhc
Confidence 2222111 000 11234555544332 233469999999988 4556788999888
Q ss_pred CCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHH
Q 011393 345 GVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQ 424 (487)
Q Consensus 345 ~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~ 424 (487)
. ++..+++|.+|+.+..|.+++++||. .+.++.|+.++....+.. .++ +......++... | ++....
T Consensus 136 E----Pp~~~~~Il~t~~~~~ll~TIrSRc~-~i~~~~~~~~~~~~~L~~----~gi--~~~~~~~l~~~~-g-~~~~A~ 202 (329)
T PRK08058 136 E----PSGGTTAILLTENKHQILPTILSRCQ-VVEFRPLPPESLIQRLQE----EGI--SESLATLLAGLT-N-SVEEAL 202 (329)
T ss_pred C----CCCCceEEEEeCChHhCcHHHHhhce-eeeCCCCCHHHHHHHHHH----cCC--ChHHHHHHHHHc-C-CHHHHH
Confidence 4 45567777788889999999999998 699999998887666653 343 344455555553 4 455444
Q ss_pred HHHH
Q 011393 425 ALCE 428 (487)
Q Consensus 425 ~lv~ 428 (487)
.+..
T Consensus 203 ~l~~ 206 (329)
T PRK08058 203 ALSE 206 (329)
T ss_pred HHhc
Confidence 4443
No 171
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.41 E-value=3e-12 Score=129.10 Aligned_cols=196 Identities=19% Similarity=0.216 Sum_probs=131.1
Q ss_pred CcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh--
Q 011393 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK-- 288 (487)
Q Consensus 214 ~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~-- 288 (487)
-+++++|.+...+.+.+.+.. ......+|||+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~----------~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSR----------LAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHH----------HhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 367899999998888888752 22345689999999999999999997654 579999999886422
Q ss_pred ---ccchhH-------HHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCC-------CC
Q 011393 289 ---WVGEGE-------KLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN-------PN 351 (487)
Q Consensus 289 ---~~g~~~-------~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~ 351 (487)
++|... ......++. ...+.|||||||.| ....+..|+..++..... ..
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATA-----------PMLVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 111110 000122332 24579999999998 345556666666432111 11
Q ss_pred CcEEEEEecCCC-------CCCCHHHHcccccEEEccCCCHHHHH----HHHHHHh----ccCC----CCCChhhHHHHH
Q 011393 352 DLVIVMGATNKP-------QELDDAVLRRLVKRIYVPLPDENVRR----LLLKHKL----KGQA----FSLPGGDLERLV 412 (487)
Q Consensus 352 ~~vivI~ttn~~-------~~ld~al~~Rf~~~i~i~~Pd~~~r~----~il~~~l----~~~~----~~l~~~~l~~La 412 (487)
..+.||++|+.. ..+.+.+..||. .+.+.+|...+|. .|+.+++ .+.+ ..++++.+..|.
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~ 218 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLL 218 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 247788877653 345678888885 2445555555553 3444443 2222 347899999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHh
Q 011393 413 RETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 413 ~~t~G~s~~dL~~lv~~A~~~a 434 (487)
.+.+..+.++|+++++.|+..+
T Consensus 219 ~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 219 NYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred hCCCCcHHHHHHHHHHHHHHhc
Confidence 9999889999999999988753
No 172
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=99.40 E-value=8.1e-13 Score=102.59 Aligned_cols=68 Identities=21% Similarity=0.184 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCC-CCCCcchhhHHHHHHHHHHHHHHHHHH
Q 011393 54 FELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTP-VPSYISTSEHEKVKSYRQKISKWQSQV 121 (487)
Q Consensus 54 ~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~-~~~~~~~~~~~k~~~y~~rae~~k~~v 121 (487)
-.+|++++.+||++|+.|+|++|+.+|++||++|+.+++++ +|+..+..++.|+.+|++|||+++..+
T Consensus 3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~Lk~~l 71 (76)
T cd02681 3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQALHQLV 71 (76)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999999998777 899999999999999999999999884
No 173
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.40 E-value=5.4e-12 Score=135.83 Aligned_cols=201 Identities=21% Similarity=0.279 Sum_probs=133.5
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccc
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLT 286 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~ 286 (487)
.+..++++++|.+...+.+.+.+.. ......+|||+|++||||+++|++|.... +.+|+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~----------~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARV----------VARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHH----------HhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 4556899999999999998888752 22345679999999999999999998874 5799999998874
Q ss_pred hhcc-----chhHHH-------HHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCC-----
Q 011393 287 SKWV-----GEGEKL-------VRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN----- 349 (487)
Q Consensus 287 ~~~~-----g~~~~~-------i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----- 349 (487)
..+. |..... ....++. ..+++|||||||.| ....+..|+..++.....
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEI-----------SPAFQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhC-----------CHHHHHHHHHHHhcCcEEECCCC
Confidence 3321 110000 0011222 24579999999998 345566677666432110
Q ss_pred --CCCcEEEEEecCCC-------CCCCHHHHcccc-cEEEccCCC--HHHHHHHHHHHhcc------CCCCCChhhHHHH
Q 011393 350 --PNDLVIVMGATNKP-------QELDDAVLRRLV-KRIYVPLPD--ENVRRLLLKHKLKG------QAFSLPGGDLERL 411 (487)
Q Consensus 350 --~~~~vivI~ttn~~-------~~ld~al~~Rf~-~~i~i~~Pd--~~~r~~il~~~l~~------~~~~l~~~~l~~L 411 (487)
....+.+|++|+.. ..+.+.|..|+. ..|.+|+.. .++...|+.+++.+ ..+.++++.+..|
T Consensus 326 ~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 405 (534)
T TIGR01817 326 RTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVL 405 (534)
T ss_pred ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 01246788877643 235566777775 234444332 12333455554432 2256789999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHh
Q 011393 412 VRETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 412 a~~t~G~s~~dL~~lv~~A~~~a 434 (487)
..+.|..+.++|+++++.|+..+
T Consensus 406 ~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 406 MSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC
Confidence 99999889999999999988654
No 174
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=2.4e-11 Score=122.16 Aligned_cols=152 Identities=21% Similarity=0.291 Sum_probs=107.8
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHcCCe------------------------EEEEecCccchhccchhHHHHHHHH
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASESQAT------------------------FFNVSASSLTSKWVGEGEKLVRTLF 301 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~~~~~------------------------~~~v~~~~l~~~~~g~~~~~i~~~f 301 (487)
.+.++.+||+||+|+|||++|+++|+.+.+. ++.+.+..- ++ ...-..++.+.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHH
Confidence 4556789999999999999999999987542 233322110 00 01234555555
Q ss_pred HHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccE
Q 011393 302 MVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKR 377 (487)
Q Consensus 302 ~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~ 377 (487)
..+. .....|++||++|.| .....+.||+.|+. ++.++++|.+|+.+..|.+++++||. .
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~SRc~-~ 159 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKSRCQ-Q 159 (328)
T ss_pred HHHhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHhhce-e
Confidence 4442 234569999999998 45677889998884 45568888899999999999999998 4
Q ss_pred EEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHH
Q 011393 378 IYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGS 421 (487)
Q Consensus 378 i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~ 421 (487)
+.|+.|+.++....+..... ..++.....++..+.| ++.
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~G-sp~ 198 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALP----ESDERERIELLTLAGG-SPL 198 (328)
T ss_pred eeCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCC-CHH
Confidence 99999999988887776532 1245566677777777 444
No 175
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.38 E-value=7.6e-11 Score=115.64 Aligned_cols=193 Identities=15% Similarity=0.232 Sum_probs=120.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCC-eEEE--EecCcc-----c---hhccch-----h-HH---HHHHHH-HHHHhcC
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQA-TFFN--VSASSL-----T---SKWVGE-----G-EK---LVRTLF-MVAISRQ 308 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~-~~~~--v~~~~l-----~---~~~~g~-----~-~~---~i~~~f-~~a~~~~ 308 (487)
..++|+||+|+|||++++.+++++.. .+.. +....+ . ....|. . .. .+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45889999999999999999998752 2221 111111 0 000111 0 11 111211 2233566
Q ss_pred CcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC--CCCCC----CHHHHcccccEEEccC
Q 011393 309 PCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN--KPQEL----DDAVLRRLVKRIYVPL 382 (487)
Q Consensus 309 p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn--~~~~l----d~al~~Rf~~~i~i~~ 382 (487)
+.+|+|||+|.+.. .....+ ..+-.........+.|+.+.. ....+ ...+.+|+...+.++.
T Consensus 124 ~~vliiDe~~~l~~-----------~~~~~l-~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 124 RALLVVDEAQNLTP-----------ELLEEL-RMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred CeEEEEECcccCCH-----------HHHHHH-HHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCC
Confidence 78999999998721 112222 222211111122233333322 11111 2356778888899999
Q ss_pred CCHHHHHHHHHHHhccCC----CCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHH
Q 011393 383 PDENVRRLLLKHKLKGQA----FSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDF 458 (487)
Q Consensus 383 Pd~~~r~~il~~~l~~~~----~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df 458 (487)
.+.++...++...+...+ ..++++.++.|.+.+.|. ++.|..+|..+...+.... ...|+.+++
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~-----------~~~i~~~~v 259 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEE-----------KREIGGEEV 259 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcC-----------CCCCCHHHH
Confidence 999999999998886543 357889999999999996 5669999999988886642 246999999
Q ss_pred HHHHHhhC
Q 011393 459 QKAMAVIR 466 (487)
Q Consensus 459 ~~al~~~~ 466 (487)
..++..+.
T Consensus 260 ~~~~~~~~ 267 (269)
T TIGR03015 260 REVIAEID 267 (269)
T ss_pred HHHHHHhh
Confidence 99998765
No 176
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=99.38 E-value=9.6e-13 Score=101.48 Aligned_cols=68 Identities=29% Similarity=0.347 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 011393 53 YFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQ 120 (487)
Q Consensus 53 ~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~rae~~k~~ 120 (487)
|+++|++++++||+.|+.|+|++|+.+|++|+++|+.+++.++++..+..++.++.+|++|||+++..
T Consensus 1 y~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RAE~lk~~ 68 (69)
T PF04212_consen 1 YLDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERAEKLKEY 68 (69)
T ss_dssp -HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999875
No 177
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.37 E-value=2.3e-12 Score=130.48 Aligned_cols=196 Identities=21% Similarity=0.275 Sum_probs=130.7
Q ss_pred CCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHH----cCCeEEEEecCccch
Q 011393 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE----SQATFFNVSASSLTS 287 (487)
Q Consensus 212 ~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~----~~~~~~~v~~~~l~~ 287 (487)
...+++++|.+...+.+.+.+.. ......+||++|++||||+++|+.+... .+.+|+.+||..+..
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 45689999999988888888852 2344578999999999999999999643 477999999988754
Q ss_pred hccc-----h-------hHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCC-----C--C
Q 011393 288 KWVG-----E-------GEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGV-----T--S 348 (487)
Q Consensus 288 ~~~g-----~-------~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~-----~--~ 348 (487)
.... . ....-..+|+.| ..++||+|||+.| ....+..++..|+.. . .
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheec---CCCEEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCCCC
Confidence 3221 1 111222344444 3469999999988 345666777777642 1 1
Q ss_pred CCCCcEEEEEecCCCCCCCH------HHHc-ccccEEEccCCCHHHHH----HHHHHHh----ccCCCCCC---hhhHHH
Q 011393 349 NPNDLVIVMGATNKPQELDD------AVLR-RLVKRIYVPLPDENVRR----LLLKHKL----KGQAFSLP---GGDLER 410 (487)
Q Consensus 349 ~~~~~vivI~ttn~~~~ld~------al~~-Rf~~~i~i~~Pd~~~r~----~il~~~l----~~~~~~l~---~~~l~~ 410 (487)
.....|.+|+||+ ..++. .+.+ |+. +.+.+|...+|. .++++++ .+.+.+++ +..+..
T Consensus 210 ~~~~dVRli~AT~--~~l~~~~~~g~dl~~rl~~--~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 210 PRPVDVRLICATT--EDLEEAVLAGADLTRRLNI--LTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CcCCCceeeeccc--cCHHHHHHhhcchhhhhcC--ceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 2234688888886 33333 3444 444 444555555553 3444443 44444443 355777
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHhH
Q 011393 411 LVRETEGYSGSDLQALCEEAAMMPI 435 (487)
Q Consensus 411 La~~t~G~s~~dL~~lv~~A~~~a~ 435 (487)
|-...+-.+.++|+++|+.++..+.
T Consensus 286 L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 286 LLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 7777776799999999999998874
No 178
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.37 E-value=9.4e-12 Score=123.36 Aligned_cols=102 Identities=24% Similarity=0.246 Sum_probs=64.5
Q ss_pred CcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC------------CCCCCCHHHHccccc
Q 011393 309 PCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN------------KPQELDDAVLRRLVK 376 (487)
Q Consensus 309 p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn------------~~~~ld~al~~Rf~~ 376 (487)
|+||||||+|.| .-+.++-|-..|+.- -.+++|+ +|| .|+-++..|++|+.
T Consensus 279 pGVLFIDEvHmL-----------DiEcFsfLnralEs~----~sPiiIl-ATNRg~~~irGt~~~sphGiP~DlLDRll- 341 (398)
T PF06068_consen 279 PGVLFIDEVHML-----------DIECFSFLNRALESE----LSPIIIL-ATNRGITKIRGTDIISPHGIPLDLLDRLL- 341 (398)
T ss_dssp E-EEEEESGGGS-----------BHHHHHHHHHHHTST----T--EEEE-EES-SEEE-BTTS-EEETT--HHHHTTEE-
T ss_pred cceEEecchhhc-----------cHHHHHHHHHHhcCC----CCcEEEE-ecCceeeeccCccCcCCCCCCcchHhhcE-
Confidence 679999999988 234444444555532 2335554 554 45678999999997
Q ss_pred EEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHH
Q 011393 377 RIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALC 427 (487)
Q Consensus 377 ~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv 427 (487)
.|...+++.++..+|++..++..++.++++.++.|+......|-+.--+|+
T Consensus 342 II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi 392 (398)
T PF06068_consen 342 IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLI 392 (398)
T ss_dssp EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCH
T ss_pred EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhh
Confidence 788999999999999999999999999999999988776555544333333
No 179
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.36 E-value=7.2e-12 Score=133.17 Aligned_cols=197 Identities=20% Similarity=0.248 Sum_probs=131.0
Q ss_pred CCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccchhc
Q 011393 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLTSKW 289 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~~~~ 289 (487)
..|++++|....++.+.+.+.. ......+|||+|++||||+++|++|.+. .+.+|+.++|..+....
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~----------~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL----------YARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH----------HhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 5699999999999988888742 2234568999999999999999999875 46799999998875332
Q ss_pred -----cchhHH--------HHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC-------C
Q 011393 290 -----VGEGEK--------LVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS-------N 349 (487)
Q Consensus 290 -----~g~~~~--------~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~ 349 (487)
+|..+. .-..+|+.| ..+.||||||+.| ....+..|+..++.... .
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~~~ 344 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGTEP 344 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhc---CCceEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCCce
Confidence 111100 011234433 3569999999998 34556667766643210 1
Q ss_pred CCCcEEEEEecCCCC-------CCCHHHHcccccEEEccCCCHHHHH----HHHHHHhc----cCCCCCChhhHHH----
Q 011393 350 PNDLVIVMGATNKPQ-------ELDDAVLRRLVKRIYVPLPDENVRR----LLLKHKLK----GQAFSLPGGDLER---- 410 (487)
Q Consensus 350 ~~~~vivI~ttn~~~-------~ld~al~~Rf~~~i~i~~Pd~~~r~----~il~~~l~----~~~~~l~~~~l~~---- 410 (487)
....+.||++|+..- .+...+..|+. .+.+.+|...+|. .++.+++. ..++.++++.+..
T Consensus 345 ~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~ 423 (526)
T TIGR02329 345 VPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGV 423 (526)
T ss_pred eeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHH
Confidence 112357888876542 23344555665 3555566655554 34444443 3345577777777
Q ss_pred ---HHHHcCCCCHHHHHHHHHHHHHHh
Q 011393 411 ---LVRETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 411 ---La~~t~G~s~~dL~~lv~~A~~~a 434 (487)
|..+.|..+.++|++++++++..+
T Consensus 424 ~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 424 ADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 888888889999999999987653
No 180
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.6e-11 Score=118.27 Aligned_cols=221 Identities=24% Similarity=0.340 Sum_probs=140.4
Q ss_pred ccChHHHHHHHHHHhhccccChhhhhc---cCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch-hccchh
Q 011393 218 VAGLEKAKQALMEMVILPAKRRDLFTG---LRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVGEG 293 (487)
Q Consensus 218 i~G~~~~k~~L~~~v~~~~~~~~~~~~---~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~-~~~g~~ 293 (487)
++|++.+|+.|.=.+...-.+-..... ..-...+|||.||.|||||+||+.+|+.++.||-..++..++. .|+|+.
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 789999998886555422111111000 1122357999999999999999999999999999999988864 588875
Q ss_pred -HHHHHHHHHHH----HhcCCcEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcCCCC---------CCC-----
Q 011393 294 -EKLVRTLFMVA----ISRQPCVIFIDEIDSIMSTRMAN---ENDASRRLKSEFLIQFDGVTS---------NPN----- 351 (487)
Q Consensus 294 -~~~i~~~f~~a----~~~~p~Il~IDEiD~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~---------~~~----- 351 (487)
+..+..++..| .....+||||||||.+..+..+. .+-....++..||..++|-.. ++.
T Consensus 143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iq 222 (408)
T COG1219 143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQ 222 (408)
T ss_pred HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEE
Confidence 34445555444 12345799999999998765332 122345677888888876321 111
Q ss_pred ---CcEEEEEec----------------------CC-----------------CC-----CCCHHHHcccccEEEccCCC
Q 011393 352 ---DLVIVMGAT----------------------NK-----------------PQ-----ELDDAVLRRLVKRIYVPLPD 384 (487)
Q Consensus 352 ---~~vivI~tt----------------------n~-----------------~~-----~ld~al~~Rf~~~i~i~~Pd 384 (487)
.++++||.. +. |+ .|-|.+..|+.....+...+
T Consensus 223 vDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Ld 302 (408)
T COG1219 223 VDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELD 302 (408)
T ss_pred EcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcC
Confidence 245555431 00 00 12467777888777888888
Q ss_pred HHHHHHHHH-----------HHhcc--CCCCCChhhHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHhh
Q 011393 385 ENVRRLLLK-----------HKLKG--QAFSLPGGDLERLVRET--EGYSGSDLQALCEEAAMMPIREL 438 (487)
Q Consensus 385 ~~~r~~il~-----------~~l~~--~~~~l~~~~l~~La~~t--~G~s~~dL~~lv~~A~~~a~~~~ 438 (487)
.+...+||. .++.- ..+.++++.+..+|+.. .+.-.+-|+.++++..+-..-++
T Consensus 303 e~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~Mfel 371 (408)
T COG1219 303 EDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFEL 371 (408)
T ss_pred HHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhC
Confidence 888877764 12222 23445778888887652 23335678888877665554443
No 181
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.35 E-value=5.8e-12 Score=129.77 Aligned_cols=198 Identities=21% Similarity=0.298 Sum_probs=136.6
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccc
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLT 286 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~ 286 (487)
.-..+|++|+|...+...+.+.+. ........|||.|.+||||..+|++|-+. .+.||+.+||..+.
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~ak----------r~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAK----------RIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHH----------hhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 345789999999999888888774 23455678999999999999999999776 47899999998765
Q ss_pred hh-----ccchh--------HHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCC-------
Q 011393 287 SK-----WVGEG--------EKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGV------- 346 (487)
Q Consensus 287 ~~-----~~g~~--------~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~------- 346 (487)
.. .+|.. ..--..+|+.| ..+-||+|||..| ...++..||..++..
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A---~gGTLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELA---NGGTLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeec---cCCeEEehhhccC-----------CHHHHHHHHHHHhhceEEecCC
Confidence 33 22221 11122344444 3468999999776 466777888777532
Q ss_pred CCCCCCcEEEEEecCCCC-------CCCHHHHcccccEEEccCCCHHHHHH----HHHHHhc----cC--CCC-CChhhH
Q 011393 347 TSNPNDLVIVMGATNKPQ-------ELDDAVLRRLVKRIYVPLPDENVRRL----LLKHKLK----GQ--AFS-LPGGDL 408 (487)
Q Consensus 347 ~~~~~~~vivI~ttn~~~-------~ld~al~~Rf~~~i~i~~Pd~~~r~~----il~~~l~----~~--~~~-l~~~~l 408 (487)
...-...|.||+|||..- .+-..|.-|+. ++.+..|...+|.+ +...++. +. .+. ++++.+
T Consensus 375 t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~ 453 (560)
T COG3829 375 TKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDAL 453 (560)
T ss_pred CCceeeEEEEEeccCcCHHHHHhcCcchhhheeeec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHH
Confidence 112234689999998531 11222333665 56777787777743 2233332 22 222 688999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHH
Q 011393 409 ERLVRETEGYSGSDLQALCEEAAM 432 (487)
Q Consensus 409 ~~La~~t~G~s~~dL~~lv~~A~~ 432 (487)
..|.++-|..+.++|++++++++.
T Consensus 454 ~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 454 ALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHHhCCCCchHHHHHHHHHHHHh
Confidence 999999998899999999999986
No 182
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.35 E-value=1.3e-11 Score=131.00 Aligned_cols=196 Identities=21% Similarity=0.266 Sum_probs=130.2
Q ss_pred CCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHH-----------cCCeEEEEe
Q 011393 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE-----------SQATFFNVS 281 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~-----------~~~~~~~v~ 281 (487)
..|++++|....++.+.+.+.. ......+|||+|++||||+++|++|.+. .+.+|+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~----------~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL----------YARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH----------HhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 4689999999999998888752 2234568999999999999999999876 467999999
Q ss_pred cCccchhcc-----chhHH--------HHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC
Q 011393 282 ASSLTSKWV-----GEGEK--------LVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS 348 (487)
Q Consensus 282 ~~~l~~~~~-----g~~~~--------~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 348 (487)
|..+..... |..+. .-..+|+.| ..+.||||||+.| ....+..|+..++....
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~L-----------p~~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEM-----------PLPLQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhC-----------CHHHHHHHHhhhhcCeE
Confidence 988753321 11100 011234443 3469999999998 34556677776653210
Q ss_pred -------CCCCcEEEEEecCCCC-------CCCHHHHcccccEEEccCCCHHHHHH----HHHHHhcc----CCCCCChh
Q 011393 349 -------NPNDLVIVMGATNKPQ-------ELDDAVLRRLVKRIYVPLPDENVRRL----LLKHKLKG----QAFSLPGG 406 (487)
Q Consensus 349 -------~~~~~vivI~ttn~~~-------~ld~al~~Rf~~~i~i~~Pd~~~r~~----il~~~l~~----~~~~l~~~ 406 (487)
.....+.||++|+..- .+.+.+..|+. .+.+.+|...+|.+ |+.+++.+ .+..+++.
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ 430 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLS-ILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAA 430 (538)
T ss_pred EecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhc-CCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 1122467888886541 12344555665 35666666666643 44555543 45556665
Q ss_pred hH-------HHHHHHcCCCCHHHHHHHHHHHHHH
Q 011393 407 DL-------ERLVRETEGYSGSDLQALCEEAAMM 433 (487)
Q Consensus 407 ~l-------~~La~~t~G~s~~dL~~lv~~A~~~ 433 (487)
.+ ..|..+.|..+.++|++++++++..
T Consensus 431 a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 431 LRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred HHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 54 5677777888999999999998874
No 183
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.35 E-value=2.1e-11 Score=130.28 Aligned_cols=197 Identities=20% Similarity=0.236 Sum_probs=135.3
Q ss_pred CcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhc-
Q 011393 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKW- 289 (487)
Q Consensus 214 ~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~- 289 (487)
.+.+++|....++.+.+.+.. ......+|||+|++||||+++|++|.... +.+|+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~----------~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV----------VAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH----------HhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 678899999999999888852 23445689999999999999999998874 5799999998875322
Q ss_pred ----cchhHH-------HHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC-------CCC
Q 011393 290 ----VGEGEK-------LVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS-------NPN 351 (487)
Q Consensus 290 ----~g~~~~-------~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~ 351 (487)
+|.... .....|+.+ ..+.|||||||.| ....+..|+..++.... ...
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCCccee
Confidence 111000 001123333 4578999999998 34555666666643211 011
Q ss_pred CcEEEEEecCCC-------CCCCHHHHcccccEEEccCCCHHHHHH----HHHHHhc----c---CCCCCChhhHHHHHH
Q 011393 352 DLVIVMGATNKP-------QELDDAVLRRLVKRIYVPLPDENVRRL----LLKHKLK----G---QAFSLPGGDLERLVR 413 (487)
Q Consensus 352 ~~vivI~ttn~~-------~~ld~al~~Rf~~~i~i~~Pd~~~r~~----il~~~l~----~---~~~~l~~~~l~~La~ 413 (487)
..+.||++|+.. ..+...+..|+. .+.+.+|...+|.+ ++.+++. + ....++++.+..|..
T Consensus 321 ~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~ 399 (509)
T PRK05022 321 VDVRVIAATNRDLREEVRAGRFRADLYHRLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLA 399 (509)
T ss_pred cceEEEEecCCCHHHHHHcCCccHHHHhccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 247788888754 235666767776 35566666666643 3333332 2 335678999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHHhH
Q 011393 414 ETEGYSGSDLQALCEEAAMMPI 435 (487)
Q Consensus 414 ~t~G~s~~dL~~lv~~A~~~a~ 435 (487)
+.|..+.++|+++++.|+..+.
T Consensus 400 y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 400 YDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred CCCCCcHHHHHHHHHHHHHhcC
Confidence 9998899999999999988763
No 184
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.34 E-value=8.9e-11 Score=121.52 Aligned_cols=153 Identities=16% Similarity=0.235 Sum_probs=93.6
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC--eEEEEecC-ccchhccchh
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA--TFFNVSAS-SLTSKWVGEG 293 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~--~~~~v~~~-~l~~~~~g~~ 293 (487)
.|+|.+++++.+...+. ...+|||+||||||||++|++++...+. +|..+.+. ......+|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 57899999888877662 3568999999999999999999997643 34433332 1122223321
Q ss_pred -HHHH--HHHHHHHHhc---CCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC-------CCCCCcEEEEEec
Q 011393 294 -EKLV--RTLFMVAISR---QPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT-------SNPNDLVIVMGAT 360 (487)
Q Consensus 294 -~~~i--~~~f~~a~~~---~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~vivI~tt 360 (487)
-... ..-|.....+ ...+||+|||..+ ....++.||..|.... ..-+.+++ ++||
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfi-v~AT 154 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLL-VTAS 154 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEE-EEEC
Confidence 0000 1112111111 2349999999766 4667788888884222 11122344 4445
Q ss_pred CCCC---CCCHHHHcccccEEEccCCC-HHHHHHHHHHH
Q 011393 361 NKPQ---ELDDAVLRRLVKRIYVPLPD-ENVRRLLLKHK 395 (487)
Q Consensus 361 n~~~---~ld~al~~Rf~~~i~i~~Pd-~~~r~~il~~~ 395 (487)
|... ...+++..||...+.+++|+ .++..+++...
T Consensus 155 N~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 155 NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 6332 23359999998889999997 46657777653
No 185
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.34 E-value=1.3e-11 Score=132.91 Aligned_cols=199 Identities=15% Similarity=0.181 Sum_probs=121.9
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEE-EecC
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFN-VSAS 283 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~-v~~~ 283 (487)
.|+++|+|.+++||+|++..++.|..++..... ...+...++|+||||||||++++.+|++++..+++ +++.
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv 145 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPT 145 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhh
Confidence 699999999999999999999999888753211 12334569999999999999999999998876544 2211
Q ss_pred c---cchhc------------cchhHHHHHHHHHHHHh----------cCCcEEEechhhhhhccCCCCcchHHHHHHHH
Q 011393 284 S---LTSKW------------VGEGEKLVRTLFMVAIS----------RQPCVIFIDEIDSIMSTRMANENDASRRLKSE 338 (487)
Q Consensus 284 ~---l~~~~------------~g~~~~~i~~~f~~a~~----------~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ 338 (487)
. ....+ .......++.++..+.. ....||||||++.++.. ....+..
T Consensus 146 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~~lq~ 217 (637)
T TIGR00602 146 LPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTRALHE 217 (637)
T ss_pred hhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHHHHHH
Confidence 0 00000 01123334444444431 24569999999987532 1123334
Q ss_pred HHH-HhcCCCCCCCCcEEEEEecCCCC----------C----CCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCC
Q 011393 339 FLI-QFDGVTSNPNDLVIVMGATNKPQ----------E----LDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAF 401 (487)
Q Consensus 339 ll~-~l~~~~~~~~~~vivI~ttn~~~----------~----ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~ 401 (487)
+|. .... .... .+|+++|..+. . |.+++++ |+. +|.|++.........|...+..++.
T Consensus 218 lLr~~~~e---~~~~-pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~ 292 (637)
T TIGR00602 218 ILRWKYVS---IGRC-PLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAK 292 (637)
T ss_pred HHHHHhhc---CCCc-eEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhh
Confidence 443 2211 1121 23333442221 1 3478886 444 6999999999988888877765432
Q ss_pred C------C-ChhhHHHHHHHcCCCCHHHH
Q 011393 402 S------L-PGGDLERLVRETEGYSGSDL 423 (487)
Q Consensus 402 ~------l-~~~~l~~La~~t~G~s~~dL 423 (487)
. + +++.+..|+....|.-...|
T Consensus 293 ~~~~~~~~p~~~~l~~I~~~s~GDiRsAI 321 (637)
T TIGR00602 293 KNGEKIKVPKKTSVELLCQGCSGDIRSAI 321 (637)
T ss_pred ccccccccCCHHHHHHHHHhCCChHHHHH
Confidence 1 1 34678888887666433333
No 186
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.33 E-value=2.1e-11 Score=134.08 Aligned_cols=198 Identities=20% Similarity=0.287 Sum_probs=132.9
Q ss_pred CCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh
Q 011393 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK 288 (487)
Q Consensus 212 ~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~ 288 (487)
..+|++++|.+...+.+.+.+.. ......+|||+|++||||+++|+++.+.. +.+|+.++|..+...
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~----------~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQ----------AAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHH----------HhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 45799999999888888777752 22334579999999999999999998864 479999999877432
Q ss_pred -----ccchh----HHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCC-------CC
Q 011393 289 -----WVGEG----EKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNP-------ND 352 (487)
Q Consensus 289 -----~~g~~----~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~ 352 (487)
++|.. .......|+. ...++||||||+.| ....+..|+..++.....+ ..
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 22211 0000012222 24579999999998 3455566666664321110 11
Q ss_pred cEEEEEecCCC-------CCCCHHHHcccccEEEccCCCHHHHHH----HHHHHhcc------CCCCCChhhHHHHHHHc
Q 011393 353 LVIVMGATNKP-------QELDDAVLRRLVKRIYVPLPDENVRRL----LLKHKLKG------QAFSLPGGDLERLVRET 415 (487)
Q Consensus 353 ~vivI~ttn~~-------~~ld~al~~Rf~~~i~i~~Pd~~~r~~----il~~~l~~------~~~~l~~~~l~~La~~t 415 (487)
.+.||+||+.. ..+.+.+..|+. .+.+.+|...+|.+ ++..++.. ..+.++++.+..|..+.
T Consensus 457 ~~riI~~t~~~l~~~~~~~~f~~dL~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~ 535 (638)
T PRK11388 457 DVRVIATTTADLAMLVEQNRFSRQLYYALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYR 535 (638)
T ss_pred eEEEEEeccCCHHHHHhcCCChHHHhhhhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCC
Confidence 46788888753 234455555665 46677777766642 34444332 13467999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 011393 416 EGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 416 ~G~s~~dL~~lv~~A~~~a 434 (487)
+..+.++|+++++.|+..+
T Consensus 536 WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 536 WPGNDFELRSVIENLALSS 554 (638)
T ss_pred CCChHHHHHHHHHHHHHhC
Confidence 8889999999999987653
No 187
>PHA02244 ATPase-like protein
Probab=99.33 E-value=3.3e-11 Score=120.66 Aligned_cols=124 Identities=23% Similarity=0.272 Sum_probs=79.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccc---hhHHHHHHHHHHHHhcCCcEEEechhhhhhccCC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVG---EGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRM 325 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g---~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~ 325 (487)
..+|||+||||||||++|+++|..++.+|+.++...-.....| ........-+..| ...+.+|||||++.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A-~~~GgvLiLDEId~a~---- 193 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEA-FKKGGLFFIDEIDASI---- 193 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHH-hhcCCEEEEeCcCcCC----
Confidence 4579999999999999999999999999999884311111111 1111111122233 2356899999999873
Q ss_pred CCcchHHHHHHHHHHHHhcCC-------CCCCCCcEEEEEecCCC-----------CCCCHHHHcccccEEEccCCCH
Q 011393 326 ANENDASRRLKSEFLIQFDGV-------TSNPNDLVIVMGATNKP-----------QELDDAVLRRLVKRIYVPLPDE 385 (487)
Q Consensus 326 ~~~~~~~~~~~~~ll~~l~~~-------~~~~~~~vivI~ttn~~-----------~~ld~al~~Rf~~~i~i~~Pd~ 385 (487)
..++..|...++.. ......++.+|+|+|.+ ..+++++++||. .+.+..|+.
T Consensus 194 -------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv-~I~~dyp~~ 263 (383)
T PHA02244 194 -------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA-PIEFDYDEK 263 (383)
T ss_pred -------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE-EeeCCCCcH
Confidence 22233333333211 11122457899999873 467999999997 699999984
No 188
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.33 E-value=1.7e-11 Score=131.13 Aligned_cols=199 Identities=22% Similarity=0.214 Sum_probs=132.5
Q ss_pred CCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccch
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTS 287 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~ 287 (487)
....|++++|.....+.+.+.+.. ......+|||+|++||||+++|+++.... +.+|+.++|..+..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~----------~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARK----------LAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHH----------HhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 457899999999888887777642 12234579999999999999999986653 47899999988754
Q ss_pred hcc-----chhH-------HHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC-------
Q 011393 288 KWV-----GEGE-------KLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS------- 348 (487)
Q Consensus 288 ~~~-----g~~~-------~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~------- 348 (487)
.+. |... .....+|+.| ..+.|||||||.| ....+..|+..++....
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~ 334 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRRVGEDH 334 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhC-----------CHHHHHHHHHHHhcCCcccCCCCc
Confidence 321 1110 0011234433 3578999999998 34455666666643210
Q ss_pred CCCCcEEEEEecCCC-------CCCCHHHHcccccEEEccCCCHHHHHH----HHHHHh----ccCC---CCCChhhHHH
Q 011393 349 NPNDLVIVMGATNKP-------QELDDAVLRRLVKRIYVPLPDENVRRL----LLKHKL----KGQA---FSLPGGDLER 410 (487)
Q Consensus 349 ~~~~~vivI~ttn~~-------~~ld~al~~Rf~~~i~i~~Pd~~~r~~----il~~~l----~~~~---~~l~~~~l~~ 410 (487)
.....+.||++|+.+ ..+.+.+..|+. .+.+..|...+|.+ ++.+++ .+.+ ..++++.+..
T Consensus 335 ~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~ 413 (520)
T PRK10820 335 EVHVDVRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTV 413 (520)
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 011346788877654 235567777876 35666666655542 333333 3332 3578999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHh
Q 011393 411 LVRETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 411 La~~t~G~s~~dL~~lv~~A~~~a 434 (487)
|..+.|..+.++|++++.+|+..+
T Consensus 414 L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 414 LTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHhC
Confidence 999988889999999999998754
No 189
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.33 E-value=1.5e-11 Score=126.69 Aligned_cols=197 Identities=21% Similarity=0.288 Sum_probs=140.0
Q ss_pred CCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh-
Q 011393 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK- 288 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~- 288 (487)
....+++|...+++.+.+.+. ........|||+|++||||-.+||+|.... +.||+.+||..+...
T Consensus 138 ~~~~~liG~S~am~~l~~~i~----------kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIA----------KVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHH----------HHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 467899999999999999885 334556789999999999999999997764 679999999887543
Q ss_pred ----ccchhHH-------HHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcC-----CCC--CC
Q 011393 289 ----WVGEGEK-------LVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDG-----VTS--NP 350 (487)
Q Consensus 289 ----~~g~~~~-------~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~--~~ 350 (487)
.+|.... .-...|+.| ..+.||||||..| ...++..||..++. +.. .-
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCccc
Confidence 2221110 011233333 4569999999877 45667777777652 211 11
Q ss_pred CCcEEEEEecCCC-------CCCCHHHHcccccEEEccCCCHHHHHH----HHHHHhc----c---CCCCCChhhHHHHH
Q 011393 351 NDLVIVMGATNKP-------QELDDAVLRRLVKRIYVPLPDENVRRL----LLKHKLK----G---QAFSLPGGDLERLV 412 (487)
Q Consensus 351 ~~~vivI~ttn~~-------~~ld~al~~Rf~~~i~i~~Pd~~~r~~----il~~~l~----~---~~~~l~~~~l~~La 412 (487)
...|.||++||.. ...-+.|.-|+. ++.+..|...+|.+ |++++++ . ....++++.+..|.
T Consensus 274 ~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~ 352 (464)
T COG2204 274 KVDVRIIAATNRDLEEEVAAGRFREDLYYRLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALL 352 (464)
T ss_pred ceeeEEEeecCcCHHHHHHcCCcHHHHHhhhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 2358899999853 123455555776 57888888877754 4444433 2 33456889999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHh
Q 011393 413 RETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 413 ~~t~G~s~~dL~~lv~~A~~~a 434 (487)
.+.|..+.++|+++|++++..+
T Consensus 353 ~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 353 AYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred hCCCChHHHHHHHHHHHHHhcC
Confidence 9999889999999999998776
No 190
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=99.32 E-value=4e-12 Score=99.51 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 011393 52 GYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQV 121 (487)
Q Consensus 52 ~~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~rae~~k~~v 121 (487)
+++++|+.++++||+.|+.|+|++|+.+|.+|+++|+.+++.++++..+..++.++.+|++|+|+++..+
T Consensus 1 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE~LK~~l 70 (75)
T cd02678 1 DFLQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEKLKEYL 70 (75)
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999999999999999999999885
No 191
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=99.31 E-value=5.7e-12 Score=96.97 Aligned_cols=68 Identities=26% Similarity=0.330 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 011393 54 FELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQV 121 (487)
Q Consensus 54 ~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~rae~~k~~v 121 (487)
-+.|..++.+||++|..|++++|+.||++||++|++.++..+|+..+..+++++.+|++|++.++..+
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36799999999999999999999999999999999999999999999999999999999999998874
No 192
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.31 E-value=5.2e-11 Score=131.89 Aligned_cols=197 Identities=19% Similarity=0.296 Sum_probs=133.3
Q ss_pred CCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh-
Q 011393 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK- 288 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~- 288 (487)
..|++++|....++.+.+.+.. ......+|||+|++|||||++|++|.... +.+|+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~----------~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEM----------VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHHHH----------HhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 5788999999999998887752 22334689999999999999999998754 679999999876432
Q ss_pred ----ccchhH-------HHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC-------CCC
Q 011393 289 ----WVGEGE-------KLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT-------SNP 350 (487)
Q Consensus 289 ----~~g~~~-------~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~ 350 (487)
.+|... ......++.+ ..++||||||+.| ...++..|+..++... ...
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~~ 508 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSNKII 508 (686)
T ss_pred hhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCCCcc
Confidence 122110 0111233333 4579999999998 3455666666664321 011
Q ss_pred CCcEEEEEecCCCC-------CCCHHHHcccccEEEccCCCHHHHHH----HHHHHhc----cCC--C-CCChhhHHHHH
Q 011393 351 NDLVIVMGATNKPQ-------ELDDAVLRRLVKRIYVPLPDENVRRL----LLKHKLK----GQA--F-SLPGGDLERLV 412 (487)
Q Consensus 351 ~~~vivI~ttn~~~-------~ld~al~~Rf~~~i~i~~Pd~~~r~~----il~~~l~----~~~--~-~l~~~~l~~La 412 (487)
...+.||++|+..- .+...+..|+. .+.+..|...+|.+ ++++++. +.+ + .++++.++.|.
T Consensus 509 ~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~ 587 (686)
T PRK15429 509 QTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLS 587 (686)
T ss_pred cceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 23477888886542 23455555665 46667777777654 3444432 222 2 36889999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHh
Q 011393 413 RETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 413 ~~t~G~s~~dL~~lv~~A~~~a 434 (487)
.+.|..+.++|++++++|+..+
T Consensus 588 ~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 588 NMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred hCCCCCcHHHHHHHHHHHHHhC
Confidence 9999889999999999998754
No 193
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.30 E-value=2.5e-11 Score=122.80 Aligned_cols=154 Identities=25% Similarity=0.374 Sum_probs=101.4
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch--hccchhH
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS--KWVGEGE 294 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~--~~~g~~~ 294 (487)
.++|.++++..+...+. ...++||-||||||||++|+.+|..++.+|+.+.|..... +..|...
T Consensus 25 ~~~g~~~~~~~~l~a~~--------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALL--------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHH--------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 37788877777666553 2468999999999999999999999999999999975332 1222211
Q ss_pred HHHH----HHHHHHH--hcCC--cEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcC-------CC-CCCCCcEEEEE
Q 011393 295 KLVR----TLFMVAI--SRQP--CVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDG-------VT-SNPNDLVIVMG 358 (487)
Q Consensus 295 ~~i~----~~f~~a~--~~~p--~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~-------~~-~~~~~~vivI~ 358 (487)
-..+ ..+.... -... +|+|+|||+.. ...+++.|+..|+. .. ..-...++||+
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra-----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via 159 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA-----------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIA 159 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccC-----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE
Confidence 1110 0000000 0001 49999999876 34566666766653 22 22335688888
Q ss_pred ecC-----CCCCCCHHHHcccccEEEccCCCH-HHHHHHHHHH
Q 011393 359 ATN-----KPQELDDAVLRRLVKRIYVPLPDE-NVRRLLLKHK 395 (487)
Q Consensus 359 ttn-----~~~~ld~al~~Rf~~~i~i~~Pd~-~~r~~il~~~ 395 (487)
|.| ....+++++++||...+.++.|+. .+...++...
T Consensus 160 T~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 160 TQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred ccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhC
Confidence 888 456789999999987899999944 4444444443
No 194
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.29 E-value=5.3e-11 Score=122.22 Aligned_cols=143 Identities=21% Similarity=0.300 Sum_probs=90.9
Q ss_pred cccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe-------EEEEecC----
Q 011393 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------FFNVSAS---- 283 (487)
Q Consensus 215 ~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------~~~v~~~---- 283 (487)
++++.+.++..+.+...+. ..++++|+||||||||++|+.+|..+... ++.++..
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 5667777777777766553 24689999999999999999999987431 2223221
Q ss_pred ccchhc----cchh--HHHHHHHHHHHHh--cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCC---------
Q 011393 284 SLTSKW----VGEG--EKLVRTLFMVAIS--RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGV--------- 346 (487)
Q Consensus 284 ~l~~~~----~g~~--~~~i~~~f~~a~~--~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~--------- 346 (487)
++...+ +|.. ...+..+...|.. ..|+|||||||+.-- ..++..+++..|+.-
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan----------i~kiFGel~~lLE~~~rg~~~~v~ 309 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN----------LSKVFGEVMMLMEHDKRGENWSVP 309 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC----------HHHhhhhhhhhcccccccccccee
Confidence 222111 1110 1233444555544 357999999998752 234455555555411
Q ss_pred ---------CCCCCCcEEEEEecCCCC----CCCHHHHcccccEEEccC
Q 011393 347 ---------TSNPNDLVIVMGATNKPQ----ELDDAVLRRLVKRIYVPL 382 (487)
Q Consensus 347 ---------~~~~~~~vivI~ttn~~~----~ld~al~~Rf~~~i~i~~ 382 (487)
.-..+.++.||||+|..+ .+|.|++|||. .+.+.+
T Consensus 310 l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~p 357 (459)
T PRK11331 310 LTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFS-FIDIEP 357 (459)
T ss_pred eeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhh-eEEecC
Confidence 012245799999999887 68999999997 466654
No 195
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.29 E-value=2.4e-12 Score=119.15 Aligned_cols=46 Identities=46% Similarity=0.681 Sum_probs=37.4
Q ss_pred CcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 214 ~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.|.||+|++.+|++|.-... .++++||+||||||||++|+++...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--------------G~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--------------GGHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--------------CC--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc--------------CCCCeEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999987774 14689999999999999999999864
No 196
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.29 E-value=1.3e-10 Score=125.97 Aligned_cols=103 Identities=19% Similarity=0.238 Sum_probs=66.7
Q ss_pred cEEEEEecCCC--CCCCHHHHcccc---cEEEccC--CC-HHHHHHHHHH---HhccC--CCCCChhhHHHHHHHcC---
Q 011393 353 LVIVMGATNKP--QELDDAVLRRLV---KRIYVPL--PD-ENVRRLLLKH---KLKGQ--AFSLPGGDLERLVRETE--- 416 (487)
Q Consensus 353 ~vivI~ttn~~--~~ld~al~~Rf~---~~i~i~~--Pd-~~~r~~il~~---~l~~~--~~~l~~~~l~~La~~t~--- 416 (487)
.+.||+++|.. ..+++.+++||. ..+.++. |+ .+.+..+++. .+++. -..+++..+..|.+...
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~a 347 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRA 347 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHH
Confidence 57888888864 578999999998 5555543 43 4555444333 33333 23467877777764321
Q ss_pred ------CCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhC
Q 011393 417 ------GYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 417 ------G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ 466 (487)
..+.++|..+|+.|...|..+ ....|+.+|+.+|++..+
T Consensus 348 g~r~~lsl~~R~L~~llR~A~~iA~~~-----------~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 348 GRKDHLTLRLRELGGLVRAAGDIAKSS-----------GKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred hcccccCCCHHHHHHHHHHHHHHHHhc-----------CCceecHHHHHHHHHHHH
Confidence 134689999999985544222 124589999999988654
No 197
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=2.3e-10 Score=114.38 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=102.2
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHcCCe------------------------EEEEecCccchhccchhHHHHHHHH
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASESQAT------------------------FFNVSASSLTSKWVGEGEKLVRTLF 301 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~~~~~------------------------~~~v~~~~l~~~~~g~~~~~i~~~f 301 (487)
.+.++++||+||+|+||+++|+++|+.+.+. |+.+.+.+ ++. -.-..++.+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~ 96 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREIN 96 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHH
Confidence 3556789999999999999999999986431 22222110 111 1234455554
Q ss_pred HHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccE
Q 011393 302 MVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKR 377 (487)
Q Consensus 302 ~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~ 377 (487)
..+. .....|++||++|.| .....+.||+.|+ .|+.++++|.+|+.+..|.+++++||. .
T Consensus 97 ~~~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLE----EPp~~~~fiL~t~~~~~llpTI~SRC~-~ 160 (325)
T PRK06871 97 EKVSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLE----EPRPNTYFLLQADLSAALLPTIYSRCQ-T 160 (325)
T ss_pred HHHhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhc----CCCCCeEEEEEECChHhCchHHHhhce-E
Confidence 4432 234469999999998 4567789999988 566678888899999999999999998 6
Q ss_pred EEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCC
Q 011393 378 IYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEG 417 (487)
Q Consensus 378 i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G 417 (487)
+.|+.|+.++..+.+..... .....+..++..+.|
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~-----~~~~~~~~~~~l~~g 195 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSS-----AEISEILTALRINYG 195 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhc-----cChHHHHHHHHHcCC
Confidence 89999999888777765421 123344455555555
No 198
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.1e-11 Score=114.60 Aligned_cols=199 Identities=23% Similarity=0.344 Sum_probs=135.5
Q ss_pred ccChHHHHHHHHHHhhccccChhhhhcc--CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchh-ccch--
Q 011393 218 VAGLEKAKQALMEMVILPAKRRDLFTGL--RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK-WVGE-- 292 (487)
Q Consensus 218 i~G~~~~k~~L~~~v~~~~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~-~~g~-- 292 (487)
|+|++++|+.+.-.+..-.++..+-..+ .-.|++||+.||.|+|||-+||.+|+-.++||+.+.++.++.- |+|.
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrDV 96 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDV 96 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccccH
Confidence 8999999999877776544444443333 2457899999999999999999999999999998777654210 1110
Q ss_pred --------------------------------------------------------------------------------
Q 011393 293 -------------------------------------------------------------------------------- 292 (487)
Q Consensus 293 -------------------------------------------------------------------------------- 292 (487)
T Consensus 97 esivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~eIeie 176 (444)
T COG1220 97 ESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDKEIEIE 176 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHcCCCCccEEEEE
Confidence
Q ss_pred -------------------hHHHHHHHHHHH---------------------------------------HhcCCcEEEe
Q 011393 293 -------------------GEKLVRTLFMVA---------------------------------------ISRQPCVIFI 314 (487)
Q Consensus 293 -------------------~~~~i~~~f~~a---------------------------------------~~~~p~Il~I 314 (487)
....+..+|..+ +..+.+||||
T Consensus 177 v~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~GIvFI 256 (444)
T COG1220 177 VADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQNGIVFI 256 (444)
T ss_pred EeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEE
Confidence 001112222111 0012359999
Q ss_pred chhhhhhccCCCCcchH-HHHHHHHHHHHhcCCCC------CCCCcEEEEEec----CCCCCCCHHHHcccccEEEccCC
Q 011393 315 DEIDSIMSTRMANENDA-SRRLKSEFLIQFDGVTS------NPNDLVIVMGAT----NKPQELDDAVLRRLVKRIYVPLP 383 (487)
Q Consensus 315 DEiD~l~~~~~~~~~~~-~~~~~~~ll~~l~~~~~------~~~~~vivI~tt----n~~~~ld~al~~Rf~~~i~i~~P 383 (487)
||||.++.....+..+. ...++..+|-.++|..- -..+++++|++. ..|.+|-|.|..||.-++++...
T Consensus 257 DEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIRVEL~~L 336 (444)
T COG1220 257 DEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRVELDAL 336 (444)
T ss_pred ehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceEEEcccC
Confidence 99999998765333233 44566777877776422 223568888774 67899999999999999999999
Q ss_pred CHHHHHHHHHH-----------Hhcc--CCCCCChhhHHHHHHHcC
Q 011393 384 DENVRRLLLKH-----------KLKG--QAFSLPGGDLERLVRETE 416 (487)
Q Consensus 384 d~~~r~~il~~-----------~l~~--~~~~l~~~~l~~La~~t~ 416 (487)
+.+....||.. +++- ..+.++++.++.||+...
T Consensus 337 t~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~ 382 (444)
T COG1220 337 TKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAY 382 (444)
T ss_pred CHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHH
Confidence 99988887641 2232 344568888888887754
No 199
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.7e-10 Score=116.22 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=105.1
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHcCCe------------------------EEEEecCccchhccchhHHHHHHHH
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASESQAT------------------------FFNVSASSLTSKWVGEGEKLVRTLF 301 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~~~~~------------------------~~~v~~~~l~~~~~g~~~~~i~~~f 301 (487)
.+.++.+||+||+|+||+++|.++|+.+-+. ++.+.+..- .. .-+-..++.+.
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--~I~idqiR~l~ 97 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KS--SLGVDAVREVT 97 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cc--cCCHHHHHHHH
Confidence 4557789999999999999999999986331 222222100 00 01233444444
Q ss_pred HHH----HhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccE
Q 011393 302 MVA----ISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKR 377 (487)
Q Consensus 302 ~~a----~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~ 377 (487)
+.+ ......|++||++|.| .....+.||+.|+ .|+.++++|..|+.++.|.+.+++||. .
T Consensus 98 ~~~~~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLE----EPp~~t~fiL~t~~~~~lLpTIrSRCq-~ 161 (334)
T PRK07993 98 EKLYEHARLGGAKVVWLPDAALL-----------TDAAANALLKTLE----EPPENTWFFLACREPARLLATLRSRCR-L 161 (334)
T ss_pred HHHhhccccCCceEEEEcchHhh-----------CHHHHHHHHHHhc----CCCCCeEEEEEECChhhChHHHHhccc-c
Confidence 433 2344569999999999 4567789999988 566778889999999999999999999 5
Q ss_pred EEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCC
Q 011393 378 IYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGY 418 (487)
Q Consensus 378 i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~ 418 (487)
+.|+.|+.++..+.+... .+ ++......++..+.|-
T Consensus 162 ~~~~~~~~~~~~~~L~~~---~~--~~~~~a~~~~~la~G~ 197 (334)
T PRK07993 162 HYLAPPPEQYALTWLSRE---VT--MSQDALLAALRLSAGA 197 (334)
T ss_pred ccCCCCCHHHHHHHHHHc---cC--CCHHHHHHHHHHcCCC
Confidence 899999988877766542 12 3455666777777763
No 200
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.26 E-value=1.4e-11 Score=108.56 Aligned_cols=112 Identities=27% Similarity=0.431 Sum_probs=71.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchh--ccchhH------HHHHHHHHHHHhcCCcEEEechhhhhhc
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK--WVGEGE------KLVRTLFMVAISRQPCVIFIDEIDSIMS 322 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~--~~g~~~------~~i~~~f~~a~~~~p~Il~IDEiD~l~~ 322 (487)
+|||+||||||||+||+.+|+.++.+++.+.++..... ..|... ......+..+ ...++|+||||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a-~~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRA-MRKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTT-HHEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccc-ccceeEEEECCcccC--
Confidence 58999999999999999999999999999988764321 111100 0000000001 115689999999876
Q ss_pred cCCCCcchHHHHHHHHHHHHhcCCCC----------CCCC-----cEEEEEecCCCC----CCCHHHHccc
Q 011393 323 TRMANENDASRRLKSEFLIQFDGVTS----------NPND-----LVIVMGATNKPQ----ELDDAVLRRL 374 (487)
Q Consensus 323 ~~~~~~~~~~~~~~~~ll~~l~~~~~----------~~~~-----~vivI~ttn~~~----~ld~al~~Rf 374 (487)
...++..|+..++.... .... .+.+|+|+|... .+++++++||
T Consensus 78 ---------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ---------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ---------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 34555556655543211 0111 389999999988 8999999998
No 201
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.26 E-value=1.9e-10 Score=121.49 Aligned_cols=146 Identities=27% Similarity=0.350 Sum_probs=91.6
Q ss_pred CCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC------------------
Q 011393 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ------------------ 274 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~------------------ 274 (487)
..|+||.|++.+++.+.-.+ ....+++|.||||||||++++.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 48999999999988776544 2346899999999999999999987431
Q ss_pred ----------CeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc
Q 011393 275 ----------ATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFD 344 (487)
Q Consensus 275 ----------~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~ 344 (487)
.+|...+++......+|.....-...+..| ..++|||||++.| ...++..|+..|+
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~-----------~~~~~~~L~~~LE 320 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEF-----------KRSVLDALREPIE 320 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhC-----------CHHHHHHHHHHHH
Confidence 122222222211112222111111123322 3469999999987 3455555665554
Q ss_pred CCC---------CCCCCcEEEEEecCCC-----C------------------CCCHHHHcccccEEEccCCCHH
Q 011393 345 GVT---------SNPNDLVIVMGATNKP-----Q------------------ELDDAVLRRLVKRIYVPLPDEN 386 (487)
Q Consensus 345 ~~~---------~~~~~~vivI~ttn~~-----~------------------~ld~al~~Rf~~~i~i~~Pd~~ 386 (487)
... .....++.+|+++|.- . .+..+|++||+..+.++.++..
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 221 1112357888888752 1 4789999999998988876543
No 202
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.26 E-value=9.7e-11 Score=124.99 Aligned_cols=167 Identities=24% Similarity=0.294 Sum_probs=100.2
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhc-cCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE----ecCccchhcc
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTG-LRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNV----SASSLTSKWV 290 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v----~~~~l~~~~~ 290 (487)
-+|.|++.+|..|.-.+..-.... ...+ ..+...+|||+|+||||||++|+++++......+.. ++..+.....
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~-~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKN-LPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccc-cCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 458999999888876664321110 0000 112234899999999999999999999875433221 2222211111
Q ss_pred ch---hHHHH-HHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCC---------CCCCCCcEEEE
Q 011393 291 GE---GEKLV-RTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGV---------TSNPNDLVIVM 357 (487)
Q Consensus 291 g~---~~~~i-~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~vivI 357 (487)
.. .+..+ ...+.. ...++++|||+|.+- ...+..|+..|+.- ...-+.++.||
T Consensus 282 ~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l~-----------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~vi 347 (509)
T smart00350 282 RDPETREFTLEGGALVL---ADNGVCCIDEFDKMD-----------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVL 347 (509)
T ss_pred EccCcceEEecCccEEe---cCCCEEEEechhhCC-----------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEE
Confidence 00 00000 001111 235699999999982 33444555555321 11122457899
Q ss_pred EecCCCC-------------CCCHHHHcccccE-EEccCCCHHHHHHHHHHHhc
Q 011393 358 GATNKPQ-------------ELDDAVLRRLVKR-IYVPLPDENVRRLLLKHKLK 397 (487)
Q Consensus 358 ~ttn~~~-------------~ld~al~~Rf~~~-i~i~~Pd~~~r~~il~~~l~ 397 (487)
+|+|+.. .|++++++||+.. +....|+.+...+|.++.+.
T Consensus 348 Aa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 348 AAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 9998753 5899999999754 55578999999999888653
No 203
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.25 E-value=3.1e-10 Score=110.61 Aligned_cols=205 Identities=20% Similarity=0.267 Sum_probs=124.8
Q ss_pred ccccChHHHHHHHH---HHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---------CCeEEEEecC
Q 011393 216 EDVAGLEKAKQALM---EMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSAS 283 (487)
Q Consensus 216 ~di~G~~~~k~~L~---~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---------~~~~~~v~~~ 283 (487)
+..+|...+++.|. +.+..|.. ....++||+|++|.|||++++.++... .++++.+.+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~---------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P 104 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKR---------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP 104 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcc---------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC
Confidence 44577666655554 44443322 224689999999999999999998763 2467776654
Q ss_pred ccchh--------------c--cchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC
Q 011393 284 SLTSK--------------W--VGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT 347 (487)
Q Consensus 284 ~l~~~--------------~--~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 347 (487)
.-.+. + -....+.-..+....+..++.+|+|||+|.++... .+-+.+++..+..+.
T Consensus 105 ~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs--------~~~qr~~Ln~LK~L~ 176 (302)
T PF05621_consen 105 PEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS--------YRKQREFLNALKFLG 176 (302)
T ss_pred CCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc--------HHHHHHHHHHHHHHh
Confidence 32110 0 01112233334455566788899999999986432 223344555444444
Q ss_pred CCCCCcEEEEEecCCCC--CCCHHHHcccccEEEccCCC-HHHHHHHHHHHhccCCC----CCCh-hhHHHHHHHcCCCC
Q 011393 348 SNPNDLVIVMGATNKPQ--ELDDAVLRRLVKRIYVPLPD-ENVRRLLLKHKLKGQAF----SLPG-GDLERLVRETEGYS 419 (487)
Q Consensus 348 ~~~~~~vivI~ttn~~~--~ld~al~~Rf~~~i~i~~Pd-~~~r~~il~~~l~~~~~----~l~~-~~l~~La~~t~G~s 419 (487)
..-.-.++.+||..... .-|+.+.+||.. +.+|... .++...++..+-...++ .+.+ .....|-..++|.
T Consensus 177 NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~- 254 (302)
T PF05621_consen 177 NELQIPIVGVGTREAYRALRTDPQLASRFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL- 254 (302)
T ss_pred hccCCCeEEeccHHHHHHhccCHHHHhccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc-
Confidence 33344466666653333 338999999984 5555532 24445566555443222 2333 4456888888885
Q ss_pred HHHHHHHHHHHHHHhHHhhc
Q 011393 420 GSDLQALCEEAAMMPIRELG 439 (487)
Q Consensus 420 ~~dL~~lv~~A~~~a~~~~~ 439 (487)
.++|..++..|+..|++.-.
T Consensus 255 iG~l~~ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 255 IGELSRLLNAAAIAAIRSGE 274 (302)
T ss_pred hHHHHHHHHHHHHHHHhcCC
Confidence 66899999999999988643
No 204
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.7e-10 Score=113.79 Aligned_cols=189 Identities=21% Similarity=0.353 Sum_probs=128.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch-hccchh-HHHHHHHHHHHH----hcCCcEEEechhhhhhcc
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVGEG-EKLVRTLFMVAI----SRQPCVIFIDEIDSIMST 323 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~-~~~g~~-~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~ 323 (487)
.+|||.||+|+|||+||+.+|+-++.||...+|..++. .|+|+. +..+..++..|. ..+..|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 57999999999999999999999999999999999875 477764 566667766552 346679999999999743
Q ss_pred CCC---CcchHHHHHHHHHHHHhcCCCC---------CCC--------CcEEEEEecC--------------------CC
Q 011393 324 RMA---NENDASRRLKSEFLIQFDGVTS---------NPN--------DLVIVMGATN--------------------KP 363 (487)
Q Consensus 324 ~~~---~~~~~~~~~~~~ll~~l~~~~~---------~~~--------~~vivI~ttn--------------------~~ 363 (487)
..+ ..+-.-..++..||..++|-.- .+. .+|++|+.-. .|
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~ 386 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAP 386 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCC
Confidence 321 1112235667788888875311 111 1455554310 00
Q ss_pred ----------C--------------------------CCCHHHHcccccEEEccCCCHHHHHHHHH-----------HHh
Q 011393 364 ----------Q--------------------------ELDDAVLRRLVKRIYVPLPDENVRRLLLK-----------HKL 396 (487)
Q Consensus 364 ----------~--------------------------~ld~al~~Rf~~~i~i~~Pd~~~r~~il~-----------~~l 396 (487)
. -+-|.|.-||...+.+...+.++..+++. .++
T Consensus 387 s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf 466 (564)
T KOG0745|consen 387 SSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLF 466 (564)
T ss_pred CCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHh
Confidence 0 02377888998888888888888877664 222
Q ss_pred ccCC--CCCChhhHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHhh
Q 011393 397 KGQA--FSLPGGDLERLVRET--EGYSGSDLQALCEEAAMMPIREL 438 (487)
Q Consensus 397 ~~~~--~~l~~~~l~~La~~t--~G~s~~dL~~lv~~A~~~a~~~~ 438 (487)
...+ +.+++..++.+|+.. .+.-.+-|+.+++.+.+.+.-+.
T Consensus 467 ~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfev 512 (564)
T KOG0745|consen 467 GMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEV 512 (564)
T ss_pred ccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccC
Confidence 3223 345788888888763 34446789999999888875543
No 205
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.22 E-value=9.5e-11 Score=106.16 Aligned_cols=133 Identities=23% Similarity=0.307 Sum_probs=90.9
Q ss_pred ChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-----------------------e
Q 011393 220 GLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA-----------------------T 276 (487)
Q Consensus 220 G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~-----------------------~ 276 (487)
|++.+++.|...+. ..+.+..+||+||+|+||+++|+++|+.+-+ .
T Consensus 1 gq~~~~~~L~~~~~-----------~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIK-----------SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHH-----------CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHH-----------cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 78889999988884 3455678999999999999999999998522 2
Q ss_pred EEEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCC
Q 011393 277 FFNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPND 352 (487)
Q Consensus 277 ~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 352 (487)
++.+....... .-....++.+..... .....|++|||+|.| .....+.||..|+ .++.
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LE----epp~ 131 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLE----EPPE 131 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHH----STTT
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhc----CCCC
Confidence 33333322100 012344555554432 234569999999998 5678899999998 4556
Q ss_pred cEEEEEecCCCCCCCHHHHcccccEEEccC
Q 011393 353 LVIVMGATNKPQELDDAVLRRLVKRIYVPL 382 (487)
Q Consensus 353 ~vivI~ttn~~~~ld~al~~Rf~~~i~i~~ 382 (487)
++++|.+|+.+..|.+++++||. .+.++.
T Consensus 132 ~~~fiL~t~~~~~il~TI~SRc~-~i~~~~ 160 (162)
T PF13177_consen 132 NTYFILITNNPSKILPTIRSRCQ-VIRFRP 160 (162)
T ss_dssp TEEEEEEES-GGGS-HHHHTTSE-EEEE--
T ss_pred CEEEEEEECChHHChHHHHhhce-EEecCC
Confidence 68899999999999999999998 466654
No 206
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=99.22 E-value=3.4e-11 Score=94.45 Aligned_cols=70 Identities=26% Similarity=0.290 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 011393 53 YFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVS 122 (487)
Q Consensus 53 ~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~rae~~k~~v~ 122 (487)
++++|++++++||+.|+.|+|++|+.+|.+|+++|+.+++.++++..+..++.++.+|++|+|+++..+.
T Consensus 2 ~~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE~Lk~~l~ 71 (75)
T cd02656 2 LLQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAEFLKELLK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999999999999999999999999999998853
No 207
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.22 E-value=7.8e-11 Score=102.18 Aligned_cols=124 Identities=27% Similarity=0.403 Sum_probs=81.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCe---EEEEecCccchhc--------------cchhHHHHHHHHHHHHhcCCcE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQAT---FFNVSASSLTSKW--------------VGEGEKLVRTLFMVAISRQPCV 311 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~---~~~v~~~~l~~~~--------------~g~~~~~i~~~f~~a~~~~p~I 311 (487)
+.+++|+||||||||++++.+|..+... ++.+++......+ ..........++..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4689999999999999999999998775 8888876543321 1234556677888887777899
Q ss_pred EEechhhhhhccCCCCcchHHHHHHH----HHHHHhcCCCCCCCCcEEEEEecCC-CCCCCHHHHcccccEEEccCC
Q 011393 312 IFIDEIDSIMSTRMANENDASRRLKS----EFLIQFDGVTSNPNDLVIVMGATNK-PQELDDAVLRRLVKRIYVPLP 383 (487)
Q Consensus 312 l~IDEiD~l~~~~~~~~~~~~~~~~~----~ll~~l~~~~~~~~~~vivI~ttn~-~~~ld~al~~Rf~~~i~i~~P 383 (487)
|||||++.+..... ...... ...... .......+|+++|. ....+..+..|++.++.+..+
T Consensus 82 iiiDei~~~~~~~~------~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQ------EALLLLLEELRLLLLL-----KSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHH------HHHHHhhhhhHHHHHH-----HhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 99999999854310 000000 000111 11223677788876 445566666688877776654
No 208
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=4.3e-10 Score=112.24 Aligned_cols=166 Identities=21% Similarity=0.240 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe---------------------EEEE
Q 011393 222 EKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT---------------------FFNV 280 (487)
Q Consensus 222 ~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~---------------------~~~v 280 (487)
+.+.+.|...+. ..+.++.+||+||+|+||+++|.++|+.+.+. ++.+
T Consensus 10 ~~~~~~l~~~~~-----------~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i 78 (319)
T PRK08769 10 QRAYDQTVAALD-----------AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLV 78 (319)
T ss_pred HHHHHHHHHHHH-----------cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEE
Confidence 455566665553 33456789999999999999999999875332 1122
Q ss_pred --ecCccchh-ccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCc
Q 011393 281 --SASSLTSK-WVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDL 353 (487)
Q Consensus 281 --~~~~l~~~-~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 353 (487)
.+..-..+ ...-.-..++.+.+.+.. ....|++||++|.| .....+.||+.|+ .+..+
T Consensus 79 ~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLE----EPp~~ 143 (319)
T PRK08769 79 SFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLE----EPSPG 143 (319)
T ss_pred ecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhh----CCCCC
Confidence 11000000 000123445555544422 23369999999998 4567788999888 45556
Q ss_pred EEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCH
Q 011393 354 VIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSG 420 (487)
Q Consensus 354 vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~ 420 (487)
+++|.+|+.++.|.+++++||. .+.|+.|+.++....+.. .+ ++..+...++..+.|-.+
T Consensus 144 ~~fiL~~~~~~~lLpTIrSRCq-~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 144 RYLWLISAQPARLPATIRSRCQ-RLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPG 203 (319)
T ss_pred CeEEEEECChhhCchHHHhhhe-EeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHH
Confidence 7788888999999999999998 689999999877776653 23 345556667777776433
No 209
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.21 E-value=1.2e-10 Score=118.68 Aligned_cols=199 Identities=23% Similarity=0.305 Sum_probs=135.9
Q ss_pred CCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh
Q 011393 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK 288 (487)
Q Consensus 212 ~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~ 288 (487)
...+..|||...++..+.+.+.. .......|||.|.+||||-.+||+|-... +.+|+.+||+.+...
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~----------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEV----------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHH----------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 45788999999999999988852 23456789999999999999999998764 679999999887543
Q ss_pred ccc-hhHHHHHHHHHHHHhc--------CCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc-----CCCCCC--CC
Q 011393 289 WVG-EGEKLVRTLFMVAISR--------QPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFD-----GVTSNP--ND 352 (487)
Q Consensus 289 ~~g-~~~~~i~~~f~~a~~~--------~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~-----~~~~~~--~~ 352 (487)
... +--...+..|.-|... ..+-||+|||-.| ...++..||..++ .+.... ..
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCCeEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCceeEE
Confidence 211 0011123334333221 3469999999766 4556667777664 222211 23
Q ss_pred cEEEEEecCCCCCCCHHHHc---------ccccEEEccCCCHHHHHH--------HHHHHhccC---CCCCChhhHHHHH
Q 011393 353 LVIVMGATNKPQELDDAVLR---------RLVKRIYVPLPDENVRRL--------LLKHKLKGQ---AFSLPGGDLERLV 412 (487)
Q Consensus 353 ~vivI~ttn~~~~ld~al~~---------Rf~~~i~i~~Pd~~~r~~--------il~~~l~~~---~~~l~~~~l~~La 412 (487)
.|.||++||+ +|...++. |+. ++.+.+|...+|.. +++.+.... .+.++.+.++.|.
T Consensus 358 DVRiIAATNR--DL~~~V~~G~FRaDLYyRLs-V~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~ 434 (550)
T COG3604 358 DVRVIAATNR--DLEEMVRDGEFRADLYYRLS-VFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLS 434 (550)
T ss_pred EEEEEeccch--hHHHHHHcCcchhhhhhccc-ccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Confidence 5789999995 44444433 444 45556677666632 223332333 4467899999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHh
Q 011393 413 RETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 413 ~~t~G~s~~dL~~lv~~A~~~a 434 (487)
...+..+.++|++++++|+..|
T Consensus 435 ~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 435 SYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cCCCCCcHHHHHHHHHHHHHHh
Confidence 9988889999999999999977
No 210
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.19 E-value=6.9e-10 Score=120.10 Aligned_cols=135 Identities=17% Similarity=0.276 Sum_probs=90.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC--eEEEEecCccchhccchhHHHHHHHHHHH---------HhcCCcEEEechh
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQA--TFFNVSASSLTSKWVGEGEKLVRTLFMVA---------ISRQPCVIFIDEI 317 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~--~~~~v~~~~l~~~~~g~~~~~i~~~f~~a---------~~~~p~Il~IDEi 317 (487)
-.+|||.|+||||||++|++++..+.. +|+.+.........+|... +...+... .....++||||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~id--l~~~~~~g~~~~~~G~L~~A~~GvL~lDEi 93 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGID--VEESLAGGQRVTQPGLLDEAPRGVLYVDMA 93 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchh--hhhhhhcCcccCCCCCeeeCCCCcEeccch
Confidence 358999999999999999999998754 5888875433333333310 00000000 0123369999999
Q ss_pred hhhhccCCCCcchHHHHHHHHHHHHhcCC---------CCCCCCcEEEEEecCCCC---CCCHHHHcccccEEEcc-CCC
Q 011393 318 DSIMSTRMANENDASRRLKSEFLIQFDGV---------TSNPNDLVIVMGATNKPQ---ELDDAVLRRLVKRIYVP-LPD 384 (487)
Q Consensus 318 D~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~vivI~ttn~~~---~ld~al~~Rf~~~i~i~-~Pd 384 (487)
+.+ ...++..|+..|+.. ...-...+.||+|+|..+ .+.++++.||..++.+. .|+
T Consensus 94 ~rl-----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~ 162 (589)
T TIGR02031 94 NLL-----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVAS 162 (589)
T ss_pred hhC-----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCC
Confidence 998 355667777777532 111123578899888765 78999999999776665 467
Q ss_pred HHHHHHHHHHHh
Q 011393 385 ENVRRLLLKHKL 396 (487)
Q Consensus 385 ~~~r~~il~~~l 396 (487)
.++|.+|++..+
T Consensus 163 ~~er~eil~~~~ 174 (589)
T TIGR02031 163 QDLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHHH
Confidence 788888887765
No 211
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.18 E-value=9e-10 Score=110.42 Aligned_cols=63 Identities=24% Similarity=0.398 Sum_probs=50.2
Q ss_pred Ccc-cccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-------eEEEEec
Q 011393 214 KWE-DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA-------TFFNVSA 282 (487)
Q Consensus 214 ~~~-di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~-------~~~~v~~ 282 (487)
-|+ +++|+++++..|.+++.... .+.....+.++|+||||+|||+||+++++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 466 89999999999998885433 122334567899999999999999999999866 7887776
No 212
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.16 E-value=2.2e-10 Score=120.70 Aligned_cols=196 Identities=17% Similarity=0.222 Sum_probs=129.1
Q ss_pred CcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhcc
Q 011393 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWV 290 (487)
Q Consensus 214 ~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~ 290 (487)
.+.+++|.....+.+.+.+.. ......+++|+|++||||+++|+++.... +.+|+.++|..+...++
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~----------~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEK----------IAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHH----------HhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 456788888777777766531 22334679999999999999999998764 57899999988743322
Q ss_pred ch-----hH-------HHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC-------CCC
Q 011393 291 GE-----GE-------KLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS-------NPN 351 (487)
Q Consensus 291 g~-----~~-------~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~ 351 (487)
.. .. ......++. ..+++||||||+.| ....+..|+..++.... ...
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~ 272 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDL-----------PLNLQAKLLRFLQERVIERLGGREEIP 272 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhC-----------CHHHHHHHHHHHhhCeEEeCCCCceee
Confidence 11 00 000011111 24579999999998 34556666666643210 111
Q ss_pred CcEEEEEecCCC-------CCCCHHHHcccccEEEccCCCHHHHHH----HHHHHhc----cC---CCCCChhhHHHHHH
Q 011393 352 DLVIVMGATNKP-------QELDDAVLRRLVKRIYVPLPDENVRRL----LLKHKLK----GQ---AFSLPGGDLERLVR 413 (487)
Q Consensus 352 ~~vivI~ttn~~-------~~ld~al~~Rf~~~i~i~~Pd~~~r~~----il~~~l~----~~---~~~l~~~~l~~La~ 413 (487)
..+.||++|+.. ..+.+.+..|+. .+.+.+|...+|.+ ++.+++. .. ...+++..+..|..
T Consensus 273 ~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 351 (445)
T TIGR02915 273 VDVRIVCATNQDLKRMIAEGTFREDLFYRIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEA 351 (445)
T ss_pred eceEEEEecCCCHHHHHHcCCccHHHHHHhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHh
Confidence 246788888654 345666777776 36666677666654 3333332 22 24578999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHHh
Q 011393 414 ETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 414 ~t~G~s~~dL~~lv~~A~~~a 434 (487)
+.+..+.++|+++++.|+..+
T Consensus 352 ~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 352 HAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred CCCCChHHHHHHHHHHHHHhC
Confidence 999889999999999998654
No 213
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=1.9e-09 Score=107.60 Aligned_cols=143 Identities=15% Similarity=0.115 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-----------------------eEE
Q 011393 222 EKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA-----------------------TFF 278 (487)
Q Consensus 222 ~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~-----------------------~~~ 278 (487)
..+.+.|...+. ..+.++.+||+||.|+||+++|+++|+.+-+ .|+
T Consensus 9 ~~~~~~l~~~~~-----------~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~ 77 (319)
T PRK06090 9 VPVWQNWKAGLD-----------AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLH 77 (319)
T ss_pred HHHHHHHHHHHH-----------cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEE
Confidence 455556665552 3455678999999999999999999997533 233
Q ss_pred EEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcE
Q 011393 279 NVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLV 354 (487)
Q Consensus 279 ~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 354 (487)
.+.+..- ++. -.-..++.+...+. .....|++||++|.| .....+.||+.++ .|+.++
T Consensus 78 ~i~p~~~-~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE----EPp~~t 139 (319)
T PRK06090 78 VIKPEKE-GKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-----------NESASNALLKTLE----EPAPNC 139 (319)
T ss_pred EEecCcC-CCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhc----CCCCCe
Confidence 3322110 011 12234455444332 233469999999998 4567788999988 456678
Q ss_pred EEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHH
Q 011393 355 IVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKH 394 (487)
Q Consensus 355 ivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~ 394 (487)
++|..|+.++.|-+.+++||. .+.|+.|+.++..+.+..
T Consensus 140 ~fiL~t~~~~~lLpTI~SRCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 140 LFLLVTHNQKRLLPTIVSRCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EEEEEECChhhChHHHHhcce-eEeCCCCCHHHHHHHHHH
Confidence 888899999999999999998 689999999888777654
No 214
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.15 E-value=4.1e-09 Score=100.62 Aligned_cols=104 Identities=19% Similarity=0.244 Sum_probs=70.9
Q ss_pred CCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEec------------CCCCCCCHHHHcccc
Q 011393 308 QPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT------------NKPQELDDAVLRRLV 375 (487)
Q Consensus 308 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~tt------------n~~~~ld~al~~Rf~ 375 (487)
-|.||||||++.| .-+.+.-|-..++. +-.+++|+++. -.|+.+++.+++|+.
T Consensus 296 vPGVLFIDEVhML-----------DiEcFTyL~kalES----~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~ 360 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----------DIECFTYLHKALES----PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLL 360 (456)
T ss_pred cCcceEeeehhhh-----------hhHHHHHHHHHhcC----CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhhee
Confidence 4789999999887 23333334444442 22334444432 235678999999987
Q ss_pred cEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHH
Q 011393 376 KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALC 427 (487)
Q Consensus 376 ~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv 427 (487)
.|..-+.+.++.++|++...+-.++.++++.+..|+.....-|-+.--.|+
T Consensus 361 -Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl 411 (456)
T KOG1942|consen 361 -IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLL 411 (456)
T ss_pred -EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhc
Confidence 566667788888899999999999999999999999875444433333333
No 215
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.15 E-value=8.1e-11 Score=107.39 Aligned_cols=114 Identities=25% Similarity=0.323 Sum_probs=76.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC----eEEEEecCccchhccchhHHHHHHHHHHH----HhcCCcEEEechhhh
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQA----TFFNVSASSLTSKWVGEGEKLVRTLFMVA----ISRQPCVIFIDEIDS 319 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~----~~~~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~Il~IDEiD~ 319 (487)
|...+||.||+|||||.+|+++|..+.. +++.++++.+... +.....+..++..+ ......||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4467999999999999999999999996 9999999988761 11111122222111 111224999999999
Q ss_pred hhccCCCCcchHHHHHHHHHHHHhcCCCC-------CCCCcEEEEEecCCC
Q 011393 320 IMSTRMANENDASRRLKSEFLIQFDGVTS-------NPNDLVIVMGATNKP 363 (487)
Q Consensus 320 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~vivI~ttn~~ 363 (487)
..+..+...+.....+++.||..|++..- -.-.++++|+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 97764444444556788888888863211 112468999999854
No 216
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=4.3e-10 Score=113.19 Aligned_cols=133 Identities=18% Similarity=0.192 Sum_probs=94.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCeE-------------------------EEEecCccc---------------
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQATF-------------------------FNVSASSLT--------------- 286 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~~-------------------------~~v~~~~l~--------------- 286 (487)
+.++++||+||+|+||+++|+++|+.+.+.. +.+.+....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 4567999999999999999999999865422 112111000
Q ss_pred ---hh----c-cchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcE
Q 011393 287 ---SK----W-VGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLV 354 (487)
Q Consensus 287 ---~~----~-~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 354 (487)
++ . ..-.-..++.+..... .....|++||++|.| .....+.||+.++ .++.++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE----EPp~~t 163 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLE----EPPPGT 163 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhc----CCCcCc
Confidence 00 0 0011234455544332 223459999999998 4567789999988 456678
Q ss_pred EEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHH
Q 011393 355 IVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHK 395 (487)
Q Consensus 355 ivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~ 395 (487)
++|.+|+.++.|.+++++||. .+.|++|+.++..+.+...
T Consensus 164 ~fiL~t~~~~~LLpTI~SRcq-~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 164 VFLLVSARIDRLLPTILSRCR-QFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEEEECChhhCcHHHHhcCE-EEEecCCCHHHHHHHHHHc
Confidence 889999999999999999997 7999999999888877653
No 217
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=99.13 E-value=1.7e-10 Score=89.05 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHH----HHHHHHHHHHHHH
Q 011393 54 FELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVK----SYRQKISKWQSQV 121 (487)
Q Consensus 54 ~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~----~y~~rae~~k~~v 121 (487)
+++|+.++++|+..|+.|+|++|+.+|.+|+++|+. ++++..+..++.|+. +|++|||+++..+
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~----ekn~~~k~~i~~K~~~~a~~yl~RAE~Lk~~l 70 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN----TSNETMDQALQTKLKQLARQALDRAEALKESM 70 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH----hcChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999998 578888999999996 9999999999883
No 218
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.11 E-value=1.4e-11 Score=104.99 Aligned_cols=112 Identities=28% Similarity=0.318 Sum_probs=61.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC-ccc-hhccchhHHHHH-HHHHHHHhcC---CcEEEechhhhhhccC
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSAS-SLT-SKWVGEGEKLVR-TLFMVAISRQ---PCVIFIDEIDSIMSTR 324 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~-~l~-~~~~g~~~~~i~-~~f~~a~~~~---p~Il~IDEiD~l~~~~ 324 (487)
||||+|+||+|||++|+++|+.++..|..|.+. ++. ++..|..--... ..|.. ... ..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~--~~GPif~~ill~DEiNra---- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEF--RPGPIFTNILLADEINRA---- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEE--EE-TT-SSEEEEETGGGS----
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEe--ecChhhhceeeecccccC----
Confidence 689999999999999999999999999988874 332 222221000000 00000 011 249999999776
Q ss_pred CCCcchHHHHHHHHHHHHhcCC-------CCCCCCcEEEEEecCCCC-----CCCHHHHcccc
Q 011393 325 MANENDASRRLKSEFLIQFDGV-------TSNPNDLVIVMGATNKPQ-----ELDDAVLRRLV 375 (487)
Q Consensus 325 ~~~~~~~~~~~~~~ll~~l~~~-------~~~~~~~vivI~ttn~~~-----~ld~al~~Rf~ 375 (487)
..+.++.+|..|... ...-+.+++||+|-|..+ .|+.++++||.
T Consensus 75 -------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 75 -------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp --------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred -------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 456677788777522 222345688999999765 68999999985
No 219
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.5e-09 Score=110.80 Aligned_cols=161 Identities=19% Similarity=0.311 Sum_probs=113.3
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE-ecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNV-SASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRM 325 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v-~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~ 325 (487)
.+-..+||+||||+|||.||-.+|...+.||+.+ ++.++.+-.....-..++.+|+.|+...-+||++|+|+.|..= .
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~-v 614 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY-V 614 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc-c
Confidence 3456799999999999999999999999999974 5556655444445567899999999988899999999998531 1
Q ss_pred CCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC-CHHHHcccccEEEccCCCH-HHHHHHHHHHhccCCCCC
Q 011393 326 ANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQEL-DDAVLRRLVKRIYVPLPDE-NVRRLLLKHKLKGQAFSL 403 (487)
Q Consensus 326 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~l-d~al~~Rf~~~i~i~~Pd~-~~r~~il~~~l~~~~~~l 403 (487)
.-....+.-++..|+..+..... .+.+.+|++||....-| .-.+...|+..+.+|.... ++..+++... + .+
T Consensus 615 pIGPRfSN~vlQaL~VllK~~pp-kg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~----n-~f 688 (744)
T KOG0741|consen 615 PIGPRFSNLVLQALLVLLKKQPP-KGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL----N-IF 688 (744)
T ss_pred ccCchhhHHHHHHHHHHhccCCC-CCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc----c-CC
Confidence 12234566777778877765543 34568888888765544 3356668888888887655 5555665543 1 13
Q ss_pred ChhhHHHHHHH
Q 011393 404 PGGDLERLVRE 414 (487)
Q Consensus 404 ~~~~l~~La~~ 414 (487)
++.+...+++.
T Consensus 689 sd~~~~~~~~~ 699 (744)
T KOG0741|consen 689 SDDEVRAIAEQ 699 (744)
T ss_pred CcchhHHHHHH
Confidence 44444444444
No 220
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.07 E-value=1.4e-09 Score=115.26 Aligned_cols=210 Identities=16% Similarity=0.191 Sum_probs=122.2
Q ss_pred hccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC
Q 011393 204 TAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (487)
Q Consensus 204 ~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~ 283 (487)
..|+++|.|.+.+||+-+..-.+.++.++..... ...+.+-+||+||||||||++++.+|++++..+.+....
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np 79 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINP 79 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCC
Confidence 3699999999999999998888888888753211 122345688999999999999999999999988875432
Q ss_pred cc-c------hhccchhH---------HHHHHH-HHHHHh-----------cCCcEEEechhhhhhccCCCCcchHHHHH
Q 011393 284 SL-T------SKWVGEGE---------KLVRTL-FMVAIS-----------RQPCVIFIDEIDSIMSTRMANENDASRRL 335 (487)
Q Consensus 284 ~l-~------~~~~g~~~---------~~i~~~-f~~a~~-----------~~p~Il~IDEiD~l~~~~~~~~~~~~~~~ 335 (487)
.. . ..+.+... .....+ +..++. ..+.||+|||+-.++... ..+.
T Consensus 80 ~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-------~~~f 152 (519)
T PF03215_consen 80 VSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-------TSRF 152 (519)
T ss_pred CCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-------HHHH
Confidence 21 0 11111100 111111 111111 245799999997664321 1222
Q ss_pred HHHHHHHhcCCCCCCCC-cEEEEEe-c------CCCC--------CCCHHHHcccc-cEEEccCCCHHHHHHHHHHHhcc
Q 011393 336 KSEFLIQFDGVTSNPND-LVIVMGA-T------NKPQ--------ELDDAVLRRLV-KRIYVPLPDENVRRLLLKHKLKG 398 (487)
Q Consensus 336 ~~~ll~~l~~~~~~~~~-~vivI~t-t------n~~~--------~ld~al~~Rf~-~~i~i~~Pd~~~r~~il~~~l~~ 398 (487)
...|...+..- .. ++++|.+ + +... -+++.++.... .+|.|.+-.....+..|..++..
T Consensus 153 ~~~L~~~l~~~----~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~ 228 (519)
T PF03215_consen 153 REALRQYLRSS----RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKK 228 (519)
T ss_pred HHHHHHHHHcC----CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHH
Confidence 23333333321 12 4666655 1 1111 34677766332 46888776666665555665554
Q ss_pred C-----C-CCCC--hhhHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Q 011393 399 Q-----A-FSLP--GGDLERLVRETEGYSGSDLQALCEEAAMMPI 435 (487)
Q Consensus 399 ~-----~-~~l~--~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~ 435 (487)
+ + ...+ ...++.|+..+.| ||+..+..-.+.+.
T Consensus 229 E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 229 EARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 3 1 1222 2348888887654 77766666555554
No 221
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.07 E-value=3.6e-10 Score=102.83 Aligned_cols=121 Identities=24% Similarity=0.350 Sum_probs=77.4
Q ss_pred ccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhc-----
Q 011393 218 VAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKW----- 289 (487)
Q Consensus 218 i~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~----- 289 (487)
|+|.+..++.+.+.+.. ....+.+|||+|++||||+++|++|.+.. +.+|+.++|+.+....
T Consensus 1 liG~s~~m~~~~~~~~~----------~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKR----------AASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHH----------HTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHH----------HhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 57777788887777752 22334789999999999999999998864 5799999998875432
Q ss_pred cchhH-------HHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC-----C--CCCCcEE
Q 011393 290 VGEGE-------KLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT-----S--NPNDLVI 355 (487)
Q Consensus 290 ~g~~~-------~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~--~~~~~vi 355 (487)
+|... .....+++.| ..++||||||+.| ...++..|+..|+.-. . ....++.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A---~~GtL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQA---NGGTLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHT---TTSEEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred hccccccccccccccCCceeec---cceEEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccccce
Confidence 22211 1112455555 4469999999998 4566677777765211 1 1123688
Q ss_pred EEEecCC
Q 011393 356 VMGATNK 362 (487)
Q Consensus 356 vI~ttn~ 362 (487)
||++|+.
T Consensus 137 iI~st~~ 143 (168)
T PF00158_consen 137 IIASTSK 143 (168)
T ss_dssp EEEEESS
T ss_pred EEeecCc
Confidence 8998874
No 222
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.06 E-value=7.1e-09 Score=109.50 Aligned_cols=243 Identities=18% Similarity=0.202 Sum_probs=149.8
Q ss_pred ccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCeEEEEecCccch
Q 011393 218 VAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----------QATFFNVSASSLTS 287 (487)
Q Consensus 218 i~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~----------~~~~~~v~~~~l~~ 287 (487)
+-+.+.....+..++...+.. ...+..++++|-||||||.+++.+-.++ ...+++|++-.+.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~-------~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~ 470 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISD-------QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLAS 470 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCC-------CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecC
Confidence 344555555555555332221 1223478999999999999999998854 35678888866654
Q ss_pred h----------ccchh------HHHHHHHHHHH-HhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCC
Q 011393 288 K----------WVGEG------EKLVRTLFMVA-ISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNP 350 (487)
Q Consensus 288 ~----------~~g~~------~~~i~~~f~~a-~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 350 (487)
. +-|+. -..+..-|... ....++||+|||+|.|+... +.++ ..+-.....+
T Consensus 471 ~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~--------QdVl----Yn~fdWpt~~ 538 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS--------QDVL----YNIFDWPTLK 538 (767)
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc--------HHHH----HHHhcCCcCC
Confidence 2 11111 11122222211 12457899999999997643 2333 3333444566
Q ss_pred CCcEEEEEecCCCCCC----CHHHHcccc-cEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCH--HHH
Q 011393 351 NDLVIVMGATNKPQEL----DDAVLRRLV-KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSG--SDL 423 (487)
Q Consensus 351 ~~~vivI~ttn~~~~l----d~al~~Rf~-~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~--~dL 423 (487)
+.+++||+.+|..+.. ...+-+|++ .+|.|.+++..+..+|+...|.... .+....++.+|+....-|| +--
T Consensus 539 ~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRra 617 (767)
T KOG1514|consen 539 NSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRA 617 (767)
T ss_pred CCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHH
Confidence 6678888888765432 333344665 6799999999999999999998763 3456666666665443333 334
Q ss_pred HHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 011393 424 QALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREF 484 (487)
Q Consensus 424 ~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~ 484 (487)
..+|++|+..|-.+... .+......+++.|+.+|+..+..+.--.-+..+.-..+.|
T Consensus 618 ldic~RA~Eia~~~~~~----~k~~~~q~v~~~~v~~Ai~em~~~~~~~~i~glS~~~k~f 674 (767)
T KOG1514|consen 618 LDICRRAAEIAEERNVK----GKLAVSQLVGILHVMEAINEMLASPYIKALKGLSFLQKIF 674 (767)
T ss_pred HHHHHHHHHHhhhhccc----ccccccceeehHHHHHHHHHHhhhhHHHHhcchHHHHHHH
Confidence 46788888777555321 1222234588999999999888766555555555444444
No 223
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.06 E-value=2.4e-09 Score=113.65 Aligned_cols=196 Identities=22% Similarity=0.292 Sum_probs=128.3
Q ss_pred CcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhcc
Q 011393 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWV 290 (487)
Q Consensus 214 ~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~ 290 (487)
.+.+++|.....+.+.+.+.. .......+++.|++||||+++|+++.... +.+|+.++|..+...+.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~----------~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGR----------LSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHH----------HhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 467789988877777766641 22335679999999999999999998875 57999999988743221
Q ss_pred -----chhHH-------HHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC-------CCC
Q 011393 291 -----GEGEK-------LVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS-------NPN 351 (487)
Q Consensus 291 -----g~~~~-------~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~ 351 (487)
|.... .....|+. ..++.|||||+|.| ....+..|+..++.... ...
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~~ 271 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGYAPVK 271 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEeccccC-----------CHHHHHHHHHHHhcCcEEeCCCCCeEE
Confidence 11000 00011221 23568999999998 34455666666643210 011
Q ss_pred CcEEEEEecCCC-------CCCCHHHHcccccEEEccCCCHHHHH----HHHHHHhc----cCC---CCCChhhHHHHHH
Q 011393 352 DLVIVMGATNKP-------QELDDAVLRRLVKRIYVPLPDENVRR----LLLKHKLK----GQA---FSLPGGDLERLVR 413 (487)
Q Consensus 352 ~~vivI~ttn~~-------~~ld~al~~Rf~~~i~i~~Pd~~~r~----~il~~~l~----~~~---~~l~~~~l~~La~ 413 (487)
..+.||+||+.. ..+.+.+..||. .+.+..|...+|. .|+.+++. ..+ ..++++.+..|..
T Consensus 272 ~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 350 (469)
T PRK10923 272 VDVRIIAATHQNLEQRVQEGKFREDLFHRLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR 350 (469)
T ss_pred eeEEEEEeCCCCHHHHHHcCCchHHHHHHhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 246778887653 245677888885 3555555554443 34444443 222 2468899999999
Q ss_pred HcCCCCHHHHHHHHHHHHHHh
Q 011393 414 ETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 414 ~t~G~s~~dL~~lv~~A~~~a 434 (487)
+.+..+.++|+++++.++..+
T Consensus 351 ~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 351 LAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred CCCCChHHHHHHHHHHHHHhC
Confidence 999999999999999988754
No 224
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.05 E-value=3.8e-09 Score=111.29 Aligned_cols=146 Identities=26% Similarity=0.351 Sum_probs=90.7
Q ss_pred CCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC----CeEEEEec------
Q 011393 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ----ATFFNVSA------ 282 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~----~~~~~v~~------ 282 (487)
..|.++.|+..+++.+.-.+ ....+++|.||||+|||++++.++..+. -..+++..
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 37889999988877754222 3457899999999999999999987642 11111111
Q ss_pred C-----cc-------------chhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc
Q 011393 283 S-----SL-------------TSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFD 344 (487)
Q Consensus 283 ~-----~l-------------~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~ 344 (487)
. .+ ....+|.....-...+..| ...+|||||++.+ ...++..|+..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A---~gGvLfLDEi~e~-----------~~~~~~~L~~~LE 319 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLA---HNGVLFLDELPEF-----------ERRTLDALREPIE 319 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhc---cCCEEecCCchhC-----------CHHHHHHHHHHHH
Confidence 0 00 0011222211112233333 3469999999876 3455666666663
Q ss_pred CCC---------CCCCCcEEEEEecCCCC---------------------CCCHHHHcccccEEEccCCCHH
Q 011393 345 GVT---------SNPNDLVIVMGATNKPQ---------------------ELDDAVLRRLVKRIYVPLPDEN 386 (487)
Q Consensus 345 ~~~---------~~~~~~vivI~ttn~~~---------------------~ld~al~~Rf~~~i~i~~Pd~~ 386 (487)
.-. .....++.+|+|+|... .++.++++||+..+.++.|+.+
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 221 11134588999998742 4778999999999999988543
No 225
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.03 E-value=5.9e-09 Score=114.89 Aligned_cols=167 Identities=14% Similarity=0.164 Sum_probs=95.4
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhh---------ccCCCCceeEEeCCCCCcHHHHHHHHHHHcC-------CeEEE
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFT---------GLRRPARGLLLFGPPGNGKTMLAKAVASESQ-------ATFFN 279 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~---------~~~~~~~~iLL~GppGtGKT~la~aiA~~~~-------~~~~~ 279 (487)
-.|.|++.+|+.|.-.+........-+. ...+...+|||.|+||||||.+|+++++... .++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 3588999999888666644322110000 0113345899999999999999999998643 23333
Q ss_pred EecCccchhcc-chhHHHH-HHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcC---------CCC
Q 011393 280 VSASSLTSKWV-GEGEKLV-RTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDG---------VTS 348 (487)
Q Consensus 280 v~~~~l~~~~~-g~~~~~i-~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~---------~~~ 348 (487)
+.+........ ...+..+ ...+.. ...+++||||+|.+- ...+..|+..|+. ...
T Consensus 530 vgLTa~~~~~d~~tG~~~le~GaLvl---AdgGtL~IDEidkms-----------~~~Q~aLlEaMEqqtIsI~KaGi~~ 595 (915)
T PTZ00111 530 VGLTASIKFNESDNGRAMIQPGAVVL---ANGGVCCIDELDKCH-----------NESRLSLYEVMEQQTVTIAKAGIVA 595 (915)
T ss_pred ccccchhhhcccccCcccccCCcEEE---cCCCeEEecchhhCC-----------HHHHHHHHHHHhCCEEEEecCCcce
Confidence 33332211000 0000000 001111 234699999999982 3344455555532 222
Q ss_pred CCCCcEEEEEecCCCC-------------CCCHHHHcccccE-EEccCCCHHHHHHHHHHHh
Q 011393 349 NPNDLVIVMGATNKPQ-------------ELDDAVLRRLVKR-IYVPLPDENVRRLLLKHKL 396 (487)
Q Consensus 349 ~~~~~vivI~ttn~~~-------------~ld~al~~Rf~~~-i~i~~Pd~~~r~~il~~~l 396 (487)
.-+.++.||||+|+.+ .|++++++||+.. +.++.|+.+.-..|..+.+
T Consensus 596 tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 596 TLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred ecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 2234688999998742 4689999999844 4566777766655544443
No 226
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.01 E-value=5.1e-09 Score=110.73 Aligned_cols=196 Identities=20% Similarity=0.276 Sum_probs=126.2
Q ss_pred CcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccchhcc
Q 011393 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLTSKWV 290 (487)
Q Consensus 214 ~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~~~~~ 290 (487)
.+..++|.......+.+.+.. ......++|++|++||||+++|+++... .+.+|+.++|..+...+.
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~----------~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAK----------IALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHH----------HcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 455678877666666555431 2233467999999999999999999776 457999999988753321
Q ss_pred -----chhHH-------HHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC-------CCC
Q 011393 291 -----GEGEK-------LVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS-------NPN 351 (487)
Q Consensus 291 -----g~~~~-------~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~ 351 (487)
|.... .....+.. ...++|||||||.|. ...+..|+..++.... ...
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~ 276 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEMP-----------LVLQAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceee
Confidence 11000 00011221 235699999999982 3455666666643210 111
Q ss_pred CcEEEEEecCCC-------CCCCHHHHcccccEEEccCCCHHHHHH----HHHHHhc----cC---CCCCChhhHHHHHH
Q 011393 352 DLVIVMGATNKP-------QELDDAVLRRLVKRIYVPLPDENVRRL----LLKHKLK----GQ---AFSLPGGDLERLVR 413 (487)
Q Consensus 352 ~~vivI~ttn~~-------~~ld~al~~Rf~~~i~i~~Pd~~~r~~----il~~~l~----~~---~~~l~~~~l~~La~ 413 (487)
.++.||++|+.. ..+.+.+..|+. .+.+..|...+|.+ ++..++. .. ...++++.++.|..
T Consensus 277 ~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 355 (457)
T PRK11361 277 VDIRIIAATNRDLQAMVKEGTFREDLFYRLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTA 355 (457)
T ss_pred eceEEEEeCCCCHHHHHHcCCchHHHHHHhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHc
Confidence 246788888754 245566666765 36677777766643 3333332 11 23578999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHHh
Q 011393 414 ETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 414 ~t~G~s~~dL~~lv~~A~~~a 434 (487)
+.+..+.++|+++++.|+..+
T Consensus 356 ~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 356 WSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred CCCCCcHHHHHHHHHHHHHhC
Confidence 999889999999999987643
No 227
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=9.2e-10 Score=112.28 Aligned_cols=46 Identities=46% Similarity=0.666 Sum_probs=40.5
Q ss_pred CCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHH
Q 011393 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|.||+|++.+|++|.-... ..+++||+||||||||+||+.+..-
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAA--------------GgHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAA--------------GGHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHh--------------cCCcEEEecCCCCchHHhhhhhccc
Confidence 489999999999999987774 3578999999999999999998765
No 228
>PRK08116 hypothetical protein; Validated
Probab=99.01 E-value=1.2e-09 Score=107.11 Aligned_cols=123 Identities=18% Similarity=0.241 Sum_probs=73.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhccch----hHHHHHHHHHHHHhcCCcEEEechhhhhh
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGE----GEKLVRTLFMVAISRQPCVIFIDEIDSIM 321 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~g~----~~~~i~~~f~~a~~~~p~Il~IDEiD~l~ 321 (487)
+.+++|||+||||||+||.++|+++ +.+++.++..++...+... .......++... ....+|+|||+...-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC
Confidence 4679999999999999999999985 7888888887765543211 111112233222 245699999995421
Q ss_pred ccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC-CC----CCHHHHccc---ccEEEccCCCH
Q 011393 322 STRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP-QE----LDDAVLRRL---VKRIYVPLPDE 385 (487)
Q Consensus 322 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~-~~----ld~al~~Rf---~~~i~i~~Pd~ 385 (487)
.. ......|+..++..... + ..+|.|||.+ .. ++..+.+|+ ...+.+..||.
T Consensus 192 ------~t---~~~~~~l~~iin~r~~~-~--~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ------DT---EWAREKVYNIIDSRYRK-G--LPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred ------CC---HHHHHHHHHHHHHHHHC-C--CCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 11 22334444445443322 1 1244566654 33 467788885 33466666664
No 229
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.00 E-value=7.4e-09 Score=112.12 Aligned_cols=51 Identities=33% Similarity=0.502 Sum_probs=44.1
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.|+..|++|+|++++++.|...+.. .++++|+||||||||+++++++..+.
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 4678999999999999999887741 24799999999999999999998764
No 230
>PRK12377 putative replication protein; Provisional
Probab=98.99 E-value=2.1e-09 Score=103.71 Aligned_cols=104 Identities=15% Similarity=0.172 Sum_probs=64.2
Q ss_pred ccccCCCCCCccccc----ChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeE
Q 011393 205 AIVDRSPSVKWEDVA----GLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATF 277 (487)
Q Consensus 205 ~~~~~~~~~~~~di~----G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~ 277 (487)
.+-......+|+.+. |...++..+..++.... ....+++|+||||||||+||.++|+++ +..+
T Consensus 63 ~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~----------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v 132 (248)
T PRK12377 63 GIQPLHRKCSFANYQVQNDGQRYALSQAKSIADELM----------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSV 132 (248)
T ss_pred CCCcccccCCcCCcccCChhHHHHHHHHHHHHHHHH----------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCe
Confidence 344455667788775 33334555544443211 123689999999999999999999986 6777
Q ss_pred EEEecCccchhccchhH--HHHHHHHHHHHhcCCcEEEechhhhh
Q 011393 278 FNVSASSLTSKWVGEGE--KLVRTLFMVAISRQPCVIFIDEIDSI 320 (487)
Q Consensus 278 ~~v~~~~l~~~~~g~~~--~~i~~~f~~a~~~~p~Il~IDEiD~l 320 (487)
+.++..++......... .....++.. -....+|+|||+...
T Consensus 133 ~~i~~~~l~~~l~~~~~~~~~~~~~l~~--l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 133 IVVTVPDVMSRLHESYDNGQSGEKFLQE--LCKVDLLVLDEIGIQ 175 (248)
T ss_pred EEEEHHHHHHHHHHHHhccchHHHHHHH--hcCCCEEEEcCCCCC
Confidence 88887776553321100 011122222 245679999999665
No 231
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.97 E-value=6.4e-08 Score=92.88 Aligned_cols=132 Identities=17% Similarity=0.251 Sum_probs=95.2
Q ss_pred CcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEec-----------CCCCCCCHHHHcccccE
Q 011393 309 PCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT-----------NKPQELDDAVLRRLVKR 377 (487)
Q Consensus 309 p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~tt-----------n~~~~ld~al~~Rf~~~ 377 (487)
|.||||||+|.| .-+.+.-|-..+++ .-.++++++|. ..|+.++-.+++|+. .
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE~----d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~l-I 352 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALEN----DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRML-I 352 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhhh----ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhh-e
Confidence 678889988877 12222222233332 22335555542 246778999999987 6
Q ss_pred EEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHH
Q 011393 378 IYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYED 457 (487)
Q Consensus 378 i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~d 457 (487)
|...+++.++.+.||+..+...++.+.++.++.|......-+-+.--.|+..|.+.+.++-. ..+..+|
T Consensus 353 I~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~-----------~~v~~~d 421 (454)
T KOG2680|consen 353 ISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKG-----------KVVEVDD 421 (454)
T ss_pred eecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC-----------ceeehhH
Confidence 77788899999999999999999999999999998887766777777888888888877732 3466788
Q ss_pred HHHHHHhhCC
Q 011393 458 FQKAMAVIRP 467 (487)
Q Consensus 458 f~~al~~~~p 467 (487)
+..+.+-+-.
T Consensus 422 i~r~y~LFlD 431 (454)
T KOG2680|consen 422 IERVYRLFLD 431 (454)
T ss_pred HHHHHHHHhh
Confidence 8888765543
No 232
>PRK15115 response regulator GlrR; Provisional
Probab=98.96 E-value=9.5e-09 Score=108.32 Aligned_cols=190 Identities=19% Similarity=0.288 Sum_probs=121.0
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhccchh
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGEG 293 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~g~~ 293 (487)
.++|.......+.+.+.. .......++|+|++||||+++|+++.... +.+|+.++|..+......
T Consensus 135 ~lig~s~~~~~~~~~~~~----------~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~-- 202 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARM----------VAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLE-- 202 (444)
T ss_pred cccccCHHHHHHHHHHHh----------hccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHH--
Confidence 466666555555444421 12234579999999999999999998764 579999999887433221
Q ss_pred HHHHHHHHHH---------------HHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC-------CCC
Q 011393 294 EKLVRTLFMV---------------AISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS-------NPN 351 (487)
Q Consensus 294 ~~~i~~~f~~---------------a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~ 351 (487)
..+|-. ......++|||||||.| ....+..|+..++.... ...
T Consensus 203 ----~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~~ 267 (444)
T PRK15115 203 ----SELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDID 267 (444)
T ss_pred ----HHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCceee
Confidence 111110 01123569999999998 34455566666643211 011
Q ss_pred CcEEEEEecCCC-------CCCCHHHHcccccEEEccCCCHHHHHH----HHHHHhcc----CC---CCCChhhHHHHHH
Q 011393 352 DLVIVMGATNKP-------QELDDAVLRRLVKRIYVPLPDENVRRL----LLKHKLKG----QA---FSLPGGDLERLVR 413 (487)
Q Consensus 352 ~~vivI~ttn~~-------~~ld~al~~Rf~~~i~i~~Pd~~~r~~----il~~~l~~----~~---~~l~~~~l~~La~ 413 (487)
..+.+|++|+.. ..+.+.+..|+. .+.+..|...+|.+ |+.+++.. .+ ..++++.+..|..
T Consensus 268 ~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~-~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 346 (444)
T PRK15115 268 IDVRIISATHRDLPKAMARGEFREDLYYRLN-VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMT 346 (444)
T ss_pred eeEEEEEeCCCCHHHHHHcCCccHHHHHhhc-eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 247788888743 123344444555 46777777777743 33444332 22 2478999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHHh
Q 011393 414 ETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 414 ~t~G~s~~dL~~lv~~A~~~a 434 (487)
+.|..+.++|+++++.|+..+
T Consensus 347 ~~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 347 ASWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred CCCCChHHHHHHHHHHHHHhC
Confidence 998889999999999987643
No 233
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=4.9e-09 Score=105.33 Aligned_cols=132 Identities=17% Similarity=0.235 Sum_probs=90.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCC-------------------------eEEEEecCcc---chhc-cchhHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQA-------------------------TFFNVSASSL---TSKW-VGEGEKLV 297 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~-------------------------~~~~v~~~~l---~~~~-~g~~~~~i 297 (487)
+.++.+||+||+|+|||++|+.+|+.+.+ .|+.+.+..- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 45678999999999999999999998643 2333433110 0000 00123456
Q ss_pred HHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcc
Q 011393 298 RTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRR 373 (487)
Q Consensus 298 ~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~R 373 (487)
+.+.+.+.. ....|++||++|.| .....+.++..++... ..+.+|.+|..+..+.+.+++|
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~SR 163 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKSR 163 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHHH
Confidence 666655532 33469999999998 3455677777777542 2255666888889999999999
Q ss_pred cccEEEccCCCHHHHHHHHHH
Q 011393 374 LVKRIYVPLPDENVRRLLLKH 394 (487)
Q Consensus 374 f~~~i~i~~Pd~~~r~~il~~ 394 (487)
|. .+.|+.|+.++..+.+..
T Consensus 164 c~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 CR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hh-hhcCCCCCHHHHHHHHHh
Confidence 98 588999999887776654
No 234
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.94 E-value=4.3e-09 Score=111.51 Aligned_cols=196 Identities=21% Similarity=0.261 Sum_probs=124.1
Q ss_pred cccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhcc-
Q 011393 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWV- 290 (487)
Q Consensus 215 ~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~- 290 (487)
+..++|.....+.+.+.+.. .......+++.|++||||+++|+++.... +.+|+.++|..+...+.
T Consensus 133 ~~~lig~s~~~~~v~~~i~~----------~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGR----------LSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHH----------HhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 34688887777766665531 12234579999999999999999998764 57899999988744322
Q ss_pred ----chhHHHH-------HHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC-------CCCC
Q 011393 291 ----GEGEKLV-------RTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS-------NPND 352 (487)
Q Consensus 291 ----g~~~~~i-------~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~ 352 (487)
|...... ...++ ...++.|||||||.|. ...+..|+..++.... ....
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l~-----------~~~q~~ll~~l~~~~~~~~~~~~~~~~ 268 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDMP-----------LDAQTRLLRVLADGEFYRVGGRTPIKV 268 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhCC-----------HHHHHHHHHHHhcCcEEECCCCceeee
Confidence 1100000 00111 1235789999999982 3445566665542210 0112
Q ss_pred cEEEEEecCCC-------CCCCHHHHcccc-cEEEccCCC--HHHHHHHHHHHhc----cCC---CCCChhhHHHHHHHc
Q 011393 353 LVIVMGATNKP-------QELDDAVLRRLV-KRIYVPLPD--ENVRRLLLKHKLK----GQA---FSLPGGDLERLVRET 415 (487)
Q Consensus 353 ~vivI~ttn~~-------~~ld~al~~Rf~-~~i~i~~Pd--~~~r~~il~~~l~----~~~---~~l~~~~l~~La~~t 415 (487)
.+.||++|+.. ..+.+.+..|+. ..|.+|+.. .++...++.+++. ..+ ..++++.+..|..+.
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 348 (463)
T TIGR01818 269 DVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLR 348 (463)
T ss_pred eeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 46777777644 245567777776 345555433 2334445554443 222 357899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 011393 416 EGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 416 ~G~s~~dL~~lv~~A~~~a 434 (487)
+..+.++|+++++.|+..+
T Consensus 349 wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 349 WPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred CCChHHHHHHHHHHHHHhC
Confidence 8889999999999998765
No 235
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.94 E-value=4.6e-09 Score=100.03 Aligned_cols=185 Identities=22% Similarity=0.318 Sum_probs=99.5
Q ss_pred cChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC---eEEEEec-Cccch----hc-
Q 011393 219 AGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---TFFNVSA-SSLTS----KW- 289 (487)
Q Consensus 219 ~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~---~~~~v~~-~~l~~----~~- 289 (487)
+|.+...+.|.+++. ..+...++|+||+|+|||+|++.+.+...- ..+.+.. ..... ..
T Consensus 2 ~gR~~el~~l~~~l~------------~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLE------------SGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHH------------H--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH------------hhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 577777777776653 123568999999999999999999998732 1112211 11000 00
Q ss_pred -----------------------------cchhHHHHHHHHHHHHhc-CCcEEEechhhhhh-ccCCCCcchHHHHHHHH
Q 011393 290 -----------------------------VGEGEKLVRTLFMVAISR-QPCVIFIDEIDSIM-STRMANENDASRRLKSE 338 (487)
Q Consensus 290 -----------------------------~g~~~~~i~~~f~~a~~~-~p~Il~IDEiD~l~-~~~~~~~~~~~~~~~~~ 338 (487)
.......+..++...... ...||+|||++.+. ... ........
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~~~ 143 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFLKS 143 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHHHH
Confidence 011233444555444332 34899999999997 211 12334444
Q ss_pred HHHHhcCCCCCCCCcEEEEEecCC-----CCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCC--ChhhHHHH
Q 011393 339 FLIQFDGVTSNPNDLVIVMGATNK-----PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSL--PGGDLERL 411 (487)
Q Consensus 339 ll~~l~~~~~~~~~~vivI~ttn~-----~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l--~~~~l~~L 411 (487)
|...++....... ..+|++++.. ...-...+..|+.. +.+++.+.++..+++...+... ..+ ++.+++.+
T Consensus 144 l~~~~~~~~~~~~-~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i 220 (234)
T PF01637_consen 144 LRSLLDSLLSQQN-VSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEI 220 (234)
T ss_dssp HHHHHHH----TT-EEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHH
T ss_pred HHHHHhhccccCC-ceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHH
Confidence 4444444222222 2334444331 11223445667776 9999999999999999988776 544 89999999
Q ss_pred HHHcCCCCHHHHHH
Q 011393 412 VRETEGYSGSDLQA 425 (487)
Q Consensus 412 a~~t~G~s~~dL~~ 425 (487)
...+.| .|+.|..
T Consensus 221 ~~~~gG-~P~~l~~ 233 (234)
T PF01637_consen 221 YSLTGG-NPRYLQE 233 (234)
T ss_dssp HHHHTT--HHHHHH
T ss_pred HHHhCC-CHHHHhc
Confidence 999988 5766643
No 236
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.93 E-value=1.9e-08 Score=101.39 Aligned_cols=162 Identities=21% Similarity=0.306 Sum_probs=106.0
Q ss_pred CCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEec------Cc--
Q 011393 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA------SS-- 284 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~------~~-- 284 (487)
..|.-++|++..+..|.--.+.| .-.++||.|+.|||||+++|+|+.-+.---....| .+
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 45889999999998876544322 23689999999999999999999976321111111 00
Q ss_pred ------------------------cchhccchhHH-HHH-----HHHH----------HHHhcCCcEEEechhhhhhccC
Q 011393 285 ------------------------LTSKWVGEGEK-LVR-----TLFM----------VAISRQPCVIFIDEIDSIMSTR 324 (487)
Q Consensus 285 ------------------------l~~~~~g~~~~-~i~-----~~f~----------~a~~~~p~Il~IDEiD~l~~~~ 324 (487)
+...-.+.++. .+. ...+ .++ ....||+|||+..|
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~-AnRGIlYvDEvnlL---- 156 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLAR-ANRGILYVDEVNLL---- 156 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhh-ccCCEEEEeccccc----
Confidence 01111122222 111 1111 111 13369999999888
Q ss_pred CCCcchHHHHHHHHHHHHhc---------CCCCCCCCcEEEEEecCCC-CCCCHHHHcccccEEEccCC-CHHHHHHHHH
Q 011393 325 MANENDASRRLKSEFLIQFD---------GVTSNPNDLVIVMGATNKP-QELDDAVLRRLVKRIYVPLP-DENVRRLLLK 393 (487)
Q Consensus 325 ~~~~~~~~~~~~~~ll~~l~---------~~~~~~~~~vivI~ttn~~-~~ld~al~~Rf~~~i~i~~P-d~~~r~~il~ 393 (487)
...++..||..+. |+.-.-+-++++|+|+|.. ..|-+.|++||...+.+..| +.++|.+|++
T Consensus 157 -------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~ 229 (423)
T COG1239 157 -------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIR 229 (423)
T ss_pred -------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHH
Confidence 4566777776653 3333334578999999976 47899999999988888775 6789999998
Q ss_pred HHhcc
Q 011393 394 HKLKG 398 (487)
Q Consensus 394 ~~l~~ 398 (487)
+.+.-
T Consensus 230 r~~~f 234 (423)
T COG1239 230 RRLAF 234 (423)
T ss_pred HHHHh
Confidence 87654
No 237
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.93 E-value=7.6e-09 Score=99.57 Aligned_cols=104 Identities=19% Similarity=0.196 Sum_probs=65.3
Q ss_pred ccccCCCCCCcccccC----hHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeE
Q 011393 205 AIVDRSPSVKWEDVAG----LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATF 277 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G----~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~ 277 (487)
.+.+.++..+|+++.- +..+...+.+++.. ......+++|+|+||||||+|+.++|+++ +..+
T Consensus 61 ~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~----------~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v 130 (244)
T PRK07952 61 GIRPLHQNCSFENYRVECEGQMNALSKARQYVEE----------FDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSV 130 (244)
T ss_pred CCCccccCCccccccCCCchHHHHHHHHHHHHHh----------hccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 3444556778888652 22344444444321 11123589999999999999999999986 7788
Q ss_pred EEEecCccchhccchh---HHHHHHHHHHHHhcCCcEEEechhhhh
Q 011393 278 FNVSASSLTSKWVGEG---EKLVRTLFMVAISRQPCVIFIDEIDSI 320 (487)
Q Consensus 278 ~~v~~~~l~~~~~g~~---~~~i~~~f~~a~~~~p~Il~IDEiD~l 320 (487)
+.++..++........ ......++... ....+|+|||++..
T Consensus 131 ~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 131 LIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred EEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 8888877765432211 11122333332 35679999999875
No 238
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.93 E-value=5.7e-08 Score=100.21 Aligned_cols=212 Identities=16% Similarity=0.211 Sum_probs=120.8
Q ss_pred hccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC
Q 011393 204 TAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (487)
Q Consensus 204 ~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~ 283 (487)
..|+++|.|.+.+++.-+..=+..+++|+... ..+. .....+-+||+||+||||||.++.+++++|..+.+....
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~----~~~~-~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Np 144 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQV----AEFT-PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNP 144 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHH----HHhc-cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCC
Confidence 46999999999999998877777777766410 0011 123345689999999999999999999999998876521
Q ss_pred -------ccchh------ccchhHHHHHHHHHHHHh------------cCCcEEEechhhhhhccCCCCcchHHHHHHHH
Q 011393 284 -------SLTSK------WVGEGEKLVRTLFMVAIS------------RQPCVIFIDEIDSIMSTRMANENDASRRLKSE 338 (487)
Q Consensus 284 -------~l~~~------~~g~~~~~i~~~f~~a~~------------~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ 338 (487)
.+... .....-.....+...+.. ..+.+|+|||+-..+... ..+.+.+
T Consensus 145 i~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-------~~~~f~e 217 (634)
T KOG1970|consen 145 INLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-------DSETFRE 217 (634)
T ss_pred ccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh-------hHHHHHH
Confidence 11111 111111112222333311 245689999997665421 2233333
Q ss_pred HHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHH--------cccccEEEccCCCHHHHHHHHHHHhccCCCCCC------
Q 011393 339 FLIQFDGVTSNPNDLVIVMGATNKPQELDDAVL--------RRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLP------ 404 (487)
Q Consensus 339 ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~--------~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~------ 404 (487)
.|..+-.....+ -|++|.-+..++..+...+ -|+. .|.|.+-...-.+..|..++.......+
T Consensus 218 vL~~y~s~g~~P--lIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~ 294 (634)
T KOG1970|consen 218 VLRLYVSIGRCP--LIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPD 294 (634)
T ss_pred HHHHHHhcCCCc--EEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCch
Confidence 343333322222 1233332333343332221 1444 5777776666666777777765555444
Q ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q 011393 405 GGDLERLVRETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 405 ~~~l~~La~~t~G~s~~dL~~lv~~A~~~a 434 (487)
...++.++..+ ++||+..+....+.+
T Consensus 295 ~~~v~~i~~~s----~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 295 TAEVELICQGS----GGDIRSAINSLQLSS 320 (634)
T ss_pred hHHHHHHHHhc----CccHHHHHhHhhhhc
Confidence 34566666655 457777776665554
No 239
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=2.7e-08 Score=97.49 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=82.9
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHcCCe----------------EEEEecCccchhccchhHHHHHHHHHHHH----
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASESQAT----------------FFNVSASSLTSKWVGEGEKLVRTLFMVAI---- 305 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~~~~~----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~---- 305 (487)
.+.++.+||+||+|+||+.+|.++|..+-+. ++.+.+.. .+.. -+-..++.+.....
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~--I~idqiR~l~~~~~~~p~ 92 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRL--HSIETPRAIKKQIWIHPY 92 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCc--CcHHHHHHHHHHHhhCcc
Confidence 3556789999999999999999999986442 22221110 0000 12334455444432
Q ss_pred hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCC
Q 011393 306 SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLP 383 (487)
Q Consensus 306 ~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~P 383 (487)
.....|++||++|.| .....+.||+.++ .|+.++++|..|+.++.+.+.+++||. .+.|+.+
T Consensus 93 e~~~kv~ii~~ad~m-----------t~~AaNaLLK~LE----EPp~~~~fiL~~~~~~~ll~TI~SRcq-~~~~~~~ 154 (290)
T PRK05917 93 ESPYKIYIIHEADRM-----------TLDAISAFLKVLE----DPPQHGVIILTSAKPQRLPPTIRSRSL-SIHIPME 154 (290)
T ss_pred CCCceEEEEechhhc-----------CHHHHHHHHHHhh----cCCCCeEEEEEeCChhhCcHHHHhcce-EEEccch
Confidence 233369999999999 4567788999888 456678888889999999999999998 4677654
No 240
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=1.8e-07 Score=95.01 Aligned_cols=199 Identities=22% Similarity=0.262 Sum_probs=131.7
Q ss_pred cccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEEEecCccchh-
Q 011393 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSASSLTSK- 288 (487)
Q Consensus 215 ~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~v~~~~l~~~- 288 (487)
-..+.|.+.-+..+++++..++. ...+..+.+.|-||||||.+...+-... ....++++|..+...
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle--------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLE--------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhh--------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 34579999999999999865432 2446789999999999999998775553 224578888764321
Q ss_pred ---------c----c-chhHHHHHHHHHHH-Hhc-CCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCC
Q 011393 289 ---------W----V-GEGEKLVRTLFMVA-ISR-QPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPND 352 (487)
Q Consensus 289 ---------~----~-g~~~~~i~~~f~~a-~~~-~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 352 (487)
+ . +..+......|+.- ... .+-||++||+|.|+... . ..|..+..+...+..
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~--------~----~vLy~lFewp~lp~s 288 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS--------Q----TVLYTLFEWPKLPNS 288 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc--------c----ceeeeehhcccCCcc
Confidence 1 0 11112222223221 112 36799999999997432 1 223333344445667
Q ss_pred cEEEEEecCCCCCCCHHHHc---cc---ccEEEccCCCHHHHHHHHHHHhccCCCCC-ChhhHHHHHHHcCCCCHHHHHH
Q 011393 353 LVIVMGATNKPQELDDAVLR---RL---VKRIYVPLPDENVRRLLLKHKLKGQAFSL-PGGDLERLVRETEGYSGSDLQA 425 (487)
Q Consensus 353 ~vivI~ttn~~~~ld~al~~---Rf---~~~i~i~~Pd~~~r~~il~~~l~~~~~~l-~~~~l~~La~~t~G~s~~dL~~ 425 (487)
++++||.+|..+.-|..|-+ |+ ...+.|++++.++..+|+...+....... -+..++.+|+...|-|| |++.
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRk 367 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRK 367 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHH
Confidence 78999999987766655544 22 36799999999999999999998755432 34578888999888665 6654
Q ss_pred H---HHHHHHHh
Q 011393 426 L---CEEAAMMP 434 (487)
Q Consensus 426 l---v~~A~~~a 434 (487)
+ |+.|...+
T Consensus 368 aLdv~R~aiEI~ 379 (529)
T KOG2227|consen 368 ALDVCRRAIEIA 379 (529)
T ss_pred HHHHHHHHHHHH
Confidence 4 55554444
No 241
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.85 E-value=3.6e-09 Score=93.17 Aligned_cols=125 Identities=22% Similarity=0.361 Sum_probs=74.3
Q ss_pred cChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CeEEEEecCccchhccchhHH
Q 011393 219 AGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSASSLTSKWVGEGEK 295 (487)
Q Consensus 219 ~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~---~~~~~v~~~~l~~~~~g~~~~ 295 (487)
+|.....+.+.+.+.. ......+|||+|++||||+++|+++....+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~----------~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLER----------LAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHH----------HHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHH----------HhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 3555566666666642 223356799999999999999999988764 356666665543
Q ss_pred HHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC-CCC------CCCH
Q 011393 296 LVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN-KPQ------ELDD 368 (487)
Q Consensus 296 ~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn-~~~------~ld~ 368 (487)
..+++.+ .+..|||+|+|.| ....+..|+..+.... ..++.+|+++. .+. .+++
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~---~~~~RlI~ss~~~l~~l~~~~~~~~ 122 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE---RSNVRLIASSSQDLEELVEEGRFSP 122 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT---TTTSEEEEEECC-CCCHHHHSTHHH
T ss_pred --HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC---CCCeEEEEEeCCCHHHHhhccchhH
Confidence 2344443 6679999999998 3344455555554321 12244555543 333 3467
Q ss_pred HHHcccc-cEEEcc
Q 011393 369 AVLRRLV-KRIYVP 381 (487)
Q Consensus 369 al~~Rf~-~~i~i~ 381 (487)
.+..||. ..|.+|
T Consensus 123 ~L~~~l~~~~i~lP 136 (138)
T PF14532_consen 123 DLYYRLSQLEIHLP 136 (138)
T ss_dssp HHHHHCSTCEEEE-
T ss_pred HHHHHhCCCEEeCC
Confidence 7777776 445544
No 242
>PRK08181 transposase; Validated
Probab=98.84 E-value=1.1e-08 Score=99.99 Aligned_cols=71 Identities=24% Similarity=0.369 Sum_probs=49.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccchhccch-hHHHHHHHHHHHHhcCCcEEEechhhhhh
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLTSKWVGE-GEKLVRTLFMVAISRQPCVIFIDEIDSIM 321 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~~~~~g~-~~~~i~~~f~~a~~~~p~Il~IDEiD~l~ 321 (487)
..+++|+||||||||+||.+++++ .|..++.++..++....... ........+.. -..+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~--l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK--LDKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHH--HhcCCEEEEecccccc
Confidence 467999999999999999999875 47788888887776543211 11112223332 2356799999998763
No 243
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.81 E-value=1.5e-08 Score=101.87 Aligned_cols=123 Identities=20% Similarity=0.242 Sum_probs=71.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhccch---hHHHHHHHHHHHHhcCCcEEEechhhhhhc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGE---GEKLVRTLFMVAISRQPCVIFIDEIDSIMS 322 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~g~---~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~ 322 (487)
..+++||||+|||||+||.++|+++ +..++.++..++....... ........+.. -....+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~--l~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL--LINCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH--hccCCEEEEeccCCCCC
Confidence 3789999999999999999999985 7788889888775543211 00011111222 23457999999976522
Q ss_pred cCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC-CCC----CCHHHHcccc---cEEEccCCCH
Q 011393 323 TRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK-PQE----LDDAVLRRLV---KRIYVPLPDE 385 (487)
Q Consensus 323 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~-~~~----ld~al~~Rf~---~~i~i~~Pd~ 385 (487)
.+ .....|+..++....... -+| .|||. |.. +++.+.+|+. ..+.+.-.|.
T Consensus 261 ------t~---~~~~~Lf~iin~R~~~~k--~tI-iTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~d~ 319 (329)
T PRK06835 261 ------TE---FSKSELFNLINKRLLRQK--KMI-ISTNLSLEELLKTYSERISSRLLGNFTLLKFYGEDI 319 (329)
T ss_pred ------CH---HHHHHHHHHHHHHHHCCC--CEE-EECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCcCh
Confidence 12 223444444443332211 234 45554 333 3567777764 2344444443
No 244
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.79 E-value=1.5e-07 Score=92.52 Aligned_cols=201 Identities=21% Similarity=0.234 Sum_probs=134.3
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCcc
Q 011393 209 RSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSL 285 (487)
Q Consensus 209 ~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l 285 (487)
......|+.+++....++.+.+... +.......+||.|..||||-++|+++-.. ...+|+.++|..+
T Consensus 197 ~~~~~~F~~~v~~S~~mk~~v~qA~----------k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l 266 (511)
T COG3283 197 AQDVSGFEQIVAVSPKMKHVVEQAQ----------KLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL 266 (511)
T ss_pred cccccchHHHhhccHHHHHHHHHHH----------HhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC
Confidence 3355678889998877777665543 12222356999999999999999998654 4689999999887
Q ss_pred chh-----ccchhH--HHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCC-------C
Q 011393 286 TSK-----WVGEGE--KLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNP-------N 351 (487)
Q Consensus 286 ~~~-----~~g~~~--~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~ 351 (487)
... .+|... .--..+|+.| ..+.+|+|||-.+ +.+++..||..+....-+. .
T Consensus 267 Pe~~aEsElFG~apg~~gk~GffE~A---ngGTVlLDeIgEm-----------Sp~lQaKLLRFL~DGtFRRVGee~Ev~ 332 (511)
T COG3283 267 PEDAAESELFGHAPGDEGKKGFFEQA---NGGTVLLDEIGEM-----------SPRLQAKLLRFLNDGTFRRVGEDHEVH 332 (511)
T ss_pred chhHhHHHHhcCCCCCCCccchhhhc---cCCeEEeehhhhc-----------CHHHHHHHHHHhcCCceeecCCcceEE
Confidence 543 222211 2334567766 3458999999766 5678888888875322111 1
Q ss_pred CcEEEEEecCCC-------CCCCHHHHcccccEEEccCCCHHHHHH--------HHHHHhccCCC---CCChhhHHHHHH
Q 011393 352 DLVIVMGATNKP-------QELDDAVLRRLVKRIYVPLPDENVRRL--------LLKHKLKGQAF---SLPGGDLERLVR 413 (487)
Q Consensus 352 ~~vivI~ttn~~-------~~ld~al~~Rf~~~i~i~~Pd~~~r~~--------il~~~l~~~~~---~l~~~~l~~La~ 413 (487)
..|.|||||..+ ...-..+.-|+. ++.+..|...+|.. ++.++..+.++ .++++.+..|.+
T Consensus 333 vdVRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~ 411 (511)
T COG3283 333 VDVRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTR 411 (511)
T ss_pred EEEEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 258899999654 123445555765 46666666665532 23333333333 457778888999
Q ss_pred HcCCCCHHHHHHHHHHHHHHh
Q 011393 414 ETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 414 ~t~G~s~~dL~~lv~~A~~~a 434 (487)
.-|..+.++|.+++-+|+...
T Consensus 412 y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 412 YAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred cCCCccHHHHHHHHHHHHHHh
Confidence 888889999999988887654
No 245
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.76 E-value=1.2e-07 Score=102.00 Aligned_cols=187 Identities=13% Similarity=0.094 Sum_probs=119.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC--CeEEEEecCccchhccchhH--HHH--------HHHHHHHHhcCCcEEEechh
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQ--ATFFNVSASSLTSKWVGEGE--KLV--------RTLFMVAISRQPCVIFIDEI 317 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~--~~~~~v~~~~l~~~~~g~~~--~~i--------~~~f~~a~~~~p~Il~IDEi 317 (487)
.||+|.|++|||||+++++++.-+. .+|+.+..+.-....+|... ..+ ..++..| ...||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 5899999999999999999999875 48888777665555555431 111 1111211 2369999999
Q ss_pred hhhhccCCCCcchHHHHHHHHHHHHhcC---------CCCCCCCcEEEEEecCCC---CCCCHHHHcccccEEEccCCCH
Q 011393 318 DSIMSTRMANENDASRRLKSEFLIQFDG---------VTSNPNDLVIVMGATNKP---QELDDAVLRRLVKRIYVPLPDE 385 (487)
Q Consensus 318 D~l~~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~vivI~ttn~~---~~ld~al~~Rf~~~i~i~~Pd~ 385 (487)
..+ ...++..|+..|+. ....-..++++|++.|.. ..|++++++||...+.+..|..
T Consensus 103 n~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~ 171 (584)
T PRK13406 103 ERL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLAL 171 (584)
T ss_pred ccC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCCh
Confidence 877 56777888888753 222223457888874322 4589999999999999998775
Q ss_pred HHHH-------HHH--HHHhccCCCCCChhhHHHHHHHcC--CC-CHHHHHHHHHHHHHHhHHhhccchhccccccCCCC
Q 011393 386 NVRR-------LLL--KHKLKGQAFSLPGGDLERLVRETE--GY-SGSDLQALCEEAAMMPIRELGTNILTVKANQLRPL 453 (487)
Q Consensus 386 ~~r~-------~il--~~~l~~~~~~l~~~~l~~La~~t~--G~-s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l 453 (487)
.+.. .|. +..+ ..+.+++..++.++..+. |. +.+....+++-|...|.- .+...|
T Consensus 172 ~~~~~~~~~~~~I~~AR~rl--~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL-----------~Gr~~V 238 (584)
T PRK13406 172 RDAREIPIDADDIAAARARL--PAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAAL-----------AGRTAV 238 (584)
T ss_pred HHhcccCCCHHHHHHHHHHH--ccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHH-----------cCCCCC
Confidence 4321 222 2222 245667777777765543 33 444444555555433322 123458
Q ss_pred cHHHHHHHHH
Q 011393 454 RYEDFQKAMA 463 (487)
Q Consensus 454 ~~~df~~al~ 463 (487)
+.+|+.+|+.
T Consensus 239 ~~~dv~~Aa~ 248 (584)
T PRK13406 239 EEEDLALAAR 248 (584)
T ss_pred CHHHHHHHHH
Confidence 8889888765
No 246
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.75 E-value=1.2e-07 Score=99.79 Aligned_cols=192 Identities=19% Similarity=0.276 Sum_probs=119.3
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhccch-
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGE- 292 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~g~- 292 (487)
.++|.......+...+.. .......++++|++||||+++|+++.... +.+|+.++|..+...+...
T Consensus 140 ~lig~s~~~~~~~~~i~~----------~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIAL----------VAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhh----------ccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 456666666655554431 22334679999999999999999997654 5789999998765332211
Q ss_pred ----hHHH-------HHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCC-------CCCcE
Q 011393 293 ----GEKL-------VRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN-------PNDLV 354 (487)
Q Consensus 293 ----~~~~-------i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v 354 (487)
.... ...++. ...+++|||||||.|. ...+..++..++..... ....+
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ldei~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ 275 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFV---EADGGTLFLDEIGDIS-----------PMMQVRLLRAIQEREVQRVGSNQTISVDV 275 (441)
T ss_pred hcCCCCCCcCCCCcCCCCcee---ECCCCEEEEeccccCC-----------HHHHHHHHHHHccCcEEeCCCCceeeece
Confidence 0000 000111 2246799999999983 34455666665432110 01235
Q ss_pred EEEEecCCC-------CCCCHHHHcccccEEEccCCCHHHHHH----HHHHHhcc-------CCCCCChhhHHHHHHHcC
Q 011393 355 IVMGATNKP-------QELDDAVLRRLVKRIYVPLPDENVRRL----LLKHKLKG-------QAFSLPGGDLERLVRETE 416 (487)
Q Consensus 355 ivI~ttn~~-------~~ld~al~~Rf~~~i~i~~Pd~~~r~~----il~~~l~~-------~~~~l~~~~l~~La~~t~ 416 (487)
.+|++|+.+ ..+.+.+..|+. .+.+..|...+|.+ ++..++.+ ....+++..+..|....+
T Consensus 276 rii~~t~~~~~~~~~~~~~~~~l~~~l~-~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~w 354 (441)
T PRK10365 276 RLIAATHRDLAAEVNAGRFRQDLYYRLN-VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 (441)
T ss_pred EEEEeCCCCHHHHHHcCCchHHHHHHhc-cceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCC
Confidence 677777543 124455555555 35666666666643 44444432 123478999999999998
Q ss_pred CCCHHHHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAAMM 433 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~~ 433 (487)
..+.++|.++++.|+..
T Consensus 355 pgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 355 PGNIRELENAVERAVVL 371 (441)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 88999999999998764
No 247
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=1.5e-06 Score=85.50 Aligned_cols=170 Identities=16% Similarity=0.118 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEE----------------EEecCc
Q 011393 221 LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFF----------------NVSASS 284 (487)
Q Consensus 221 ~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~----------------~v~~~~ 284 (487)
+..+++.|...+. ..+.++.+||+|| +||+++|+.+|..+-+.-- .-+..+
T Consensus 7 q~~~~~~L~~~~~-----------~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 7 QPKVFQRFQTILE-----------QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHH-----------cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 4456666666663 3455778999996 6899999999987533210 000111
Q ss_pred cc---hhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 011393 285 LT---SKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVM 357 (487)
Q Consensus 285 l~---~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI 357 (487)
+. .....-.-..++.+..... .....|++||++|.| .....+.||+.++ .|+.++++|
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-----------~~~AaNaLLKtLE----EPp~~t~~i 138 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-----------HVNAANSLLKVIE----EPQSEIYIF 138 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-----------CHHHHHHHHHHhc----CCCCCeEEE
Confidence 10 0000012344555544432 233469999999999 4566788999888 456668888
Q ss_pred EecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHH
Q 011393 358 GATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCE 428 (487)
Q Consensus 358 ~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~ 428 (487)
.+|+.++.+-|.+++||. .+.|+. +.+...+++ ...++. ......++... | +++....+..
T Consensus 139 L~t~~~~~lLpTI~SRcq-~i~f~~-~~~~~~~~L----~~~g~~--~~~a~~la~~~-~-s~~~A~~l~~ 199 (290)
T PRK07276 139 LLTNDENKVLPTIKSRTQ-IFHFPK-NEAYLIQLL----EQKGLL--KTQAELLAKLA-Q-STSEAEKLAQ 199 (290)
T ss_pred EEECChhhCchHHHHcce-eeeCCC-cHHHHHHHH----HHcCCC--hHHHHHHHHHC-C-CHHHHHHHhC
Confidence 888889999999999998 577865 444444444 344433 33344455443 4 5665555553
No 248
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.72 E-value=1.1e-07 Score=102.72 Aligned_cols=169 Identities=25% Similarity=0.246 Sum_probs=90.7
Q ss_pred cccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEE-EecCc---cchhcc
Q 011393 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFN-VSASS---LTSKWV 290 (487)
Q Consensus 215 ~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~-v~~~~---l~~~~~ 290 (487)
.-.|.|++++|++|.-++........--....+..-+|||.|.||||||.|.+.+++-+...++. ..++. ++...+
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 45689999999998766643222110000011233689999999999999999999887554442 11111 111111
Q ss_pred chhHHHHHHHHHHH---HhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHH----hc--CCCCCCCCcEEEEEecC
Q 011393 291 GEGEKLVRTLFMVA---ISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQ----FD--GVTSNPNDLVIVMGATN 361 (487)
Q Consensus 291 g~~~~~i~~~f~~a---~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~----l~--~~~~~~~~~vivI~ttn 361 (487)
.... ..++.-.+ -...++|++|||+|.+- ...+..+.+.+.+ +. |+...-+-++-|+||+|
T Consensus 365 rd~~--tge~~LeaGALVlAD~Gv~cIDEfdKm~--------~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaN 434 (682)
T COG1241 365 RDKV--TGEWVLEAGALVLADGGVCCIDEFDKMN--------EEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAAN 434 (682)
T ss_pred EccC--CCeEEEeCCEEEEecCCEEEEEeccCCC--------hHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhC
Confidence 0000 00000001 01245799999999882 2222222222221 11 22222234566788888
Q ss_pred CCC-------------CCCHHHHcccccEEEc-cCCCHHHHHHHHH
Q 011393 362 KPQ-------------ELDDAVLRRLVKRIYV-PLPDENVRRLLLK 393 (487)
Q Consensus 362 ~~~-------------~ld~al~~Rf~~~i~i-~~Pd~~~r~~il~ 393 (487)
+.+ .|+++|++||+..+.+ ..|+.+.-..+..
T Consensus 435 P~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~ 480 (682)
T COG1241 435 PKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAE 480 (682)
T ss_pred CCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHH
Confidence 775 3689999999955433 3466553333333
No 249
>PF13173 AAA_14: AAA domain
Probab=98.70 E-value=7.8e-08 Score=83.51 Aligned_cols=69 Identities=26% Similarity=0.422 Sum_probs=48.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC--CeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhh
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQ--ATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSI 320 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~--~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l 320 (487)
+.++|+||+|||||++++.+++... ..++++++.+.......... +...+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 5689999999999999999999876 77888888776542211111 222222222236789999999987
No 250
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=7.4e-07 Score=88.40 Aligned_cols=144 Identities=12% Similarity=-0.007 Sum_probs=96.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCe-------------EEEEecCccchhccchhHHHHHHHHHHHHh-----cC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQAT-------------FFNVSASSLTSKWVGEGEKLVRTLFMVAIS-----RQ 308 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~-----~~ 308 (487)
+.++.+||+|+.|.||+.+|+.+++.+.+. +..++.. +.. ..-..++.+.+.... ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCC
Confidence 445778999999999999999999986331 2222210 010 112344444443321 24
Q ss_pred CcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHH
Q 011393 309 PCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVR 388 (487)
Q Consensus 309 p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r 388 (487)
..|++||++|.+ .....+.|+..++. ++..+++|.+|+.+..+-+++++||. .+.+..|+.++.
T Consensus 91 ~KvvII~~~e~m-----------~~~a~NaLLK~LEE----Pp~~t~~il~~~~~~kll~TI~SRc~-~~~f~~l~~~~l 154 (299)
T PRK07132 91 KKILIIKNIEKT-----------SNSLLNALLKTIEE----PPKDTYFLLTTKNINKVLPTIVSRCQ-VFNVKEPDQQKI 154 (299)
T ss_pred ceEEEEeccccc-----------CHHHHHHHHHHhhC----CCCCeEEEEEeCChHhChHHHHhCeE-EEECCCCCHHHH
Confidence 569999999888 34566788888874 45557777777788999999999998 689999988877
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHcCC
Q 011393 389 RLLLKHKLKGQAFSLPGGDLERLVRETEG 417 (487)
Q Consensus 389 ~~il~~~l~~~~~~l~~~~l~~La~~t~G 417 (487)
...+... + +++.....++..+.|
T Consensus 155 ~~~l~~~----~--~~~~~a~~~a~~~~~ 177 (299)
T PRK07132 155 LAKLLSK----N--KEKEYNWFYAYIFSN 177 (299)
T ss_pred HHHHHHc----C--CChhHHHHHHHHcCC
Confidence 7665542 2 344555555655554
No 251
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.65 E-value=4.4e-07 Score=94.99 Aligned_cols=179 Identities=20% Similarity=0.208 Sum_probs=98.5
Q ss_pred CcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe-c---Cccchhc
Q 011393 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS-A---SSLTSKW 289 (487)
Q Consensus 214 ~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~-~---~~l~~~~ 289 (487)
-+-.|.|++.+|.-|.-.+..-......-.-..+.-.+|++.|.||||||-+.++++.-+...+|..- + +.|+...
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaV 422 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAV 422 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEE
Confidence 36679999999998876665433222210011233468999999999999999999998765554311 1 1111111
Q ss_pred cchhHHHHHHHHHHHH---hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc--CCCCCCCCcEEEEEecCCCC
Q 011393 290 VGEGEKLVRTLFMVAI---SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFD--GVTSNPNDLVIVMGATNKPQ 364 (487)
Q Consensus 290 ~g~~~~~i~~~f~~a~---~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~--~~~~~~~~~vivI~ttn~~~ 364 (487)
+...+.. ++...|. -...+|.+|||+|.+--+ +..+..+.+++--..+. |+...-+-+.-||+|+|+..
T Consensus 423 vkD~esg--df~iEAGALmLADnGICCIDEFDKMd~~----dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~ 496 (764)
T KOG0480|consen 423 VKDEESG--DFTIEAGALMLADNGICCIDEFDKMDVK----DQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVG 496 (764)
T ss_pred EecCCCC--ceeeecCcEEEccCceEEechhcccChH----hHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcC
Confidence 1000000 0000010 123469999999998221 11112222222111111 22211223345777787653
Q ss_pred -------------CCCHHHHcccc-cEEEccCCCHHHHHHHHHHHhcc
Q 011393 365 -------------ELDDAVLRRLV-KRIYVPLPDENVRRLLLKHKLKG 398 (487)
Q Consensus 365 -------------~ld~al~~Rf~-~~i~i~~Pd~~~r~~il~~~l~~ 398 (487)
.+++++++||+ ..|.++.|++..-..|-++.+..
T Consensus 497 GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 497 GHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred CccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 35899999999 44677788887777776666643
No 252
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.65 E-value=8.2e-08 Score=106.62 Aligned_cols=212 Identities=16% Similarity=0.196 Sum_probs=142.1
Q ss_pred hccccCCCCCCcccccChHHHHHHHHHHhhcccc-ChhhhhccCCC--Cc-eeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 204 TAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAK-RRDLFTGLRRP--AR-GLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 204 ~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~-~~~~~~~~~~~--~~-~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
..|.+++.+....++.|.......+.+++...-. .+..|...... .. .++++||||+|||+.++.+|.++|..+++
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E 387 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVE 387 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceee
Confidence 4688999999999999988777777777754311 11122222111 12 36999999999999999999999999999
Q ss_pred EecCccchhccch-------hHHHHHHHH---H--HHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC
Q 011393 280 VSASSLTSKWVGE-------GEKLVRTLF---M--VAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT 347 (487)
Q Consensus 280 v~~~~l~~~~~g~-------~~~~i~~~f---~--~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 347 (487)
.++++..++.... ....+...+ . ........||++||+|.++.. .+..+.++.....
T Consensus 388 ~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~--------dRg~v~~l~~l~~--- 456 (871)
T KOG1968|consen 388 KNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE--------DRGGVSKLSSLCK--- 456 (871)
T ss_pred cCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch--------hhhhHHHHHHHHH---
Confidence 9999876653321 111222222 0 001111239999999998641 2222333332222
Q ss_pred CCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHH
Q 011393 348 SNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALC 427 (487)
Q Consensus 348 ~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv 427 (487)
... +-||+++|.........+.|.+..++|+.|+.+....-+..++....+.+++..++.+.+.+. +||+..+
T Consensus 457 -ks~--~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~----~DiR~~i 529 (871)
T KOG1968|consen 457 -KSS--RPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSG----GDIRQII 529 (871)
T ss_pred -hcc--CCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcc----cCHHHHH
Confidence 111 346777887776665555565567999999999999999999999999999999999999874 5676666
Q ss_pred HHHHHH
Q 011393 428 EEAAMM 433 (487)
Q Consensus 428 ~~A~~~ 433 (487)
..-.+.
T Consensus 530 ~~lq~~ 535 (871)
T KOG1968|consen 530 MQLQFW 535 (871)
T ss_pred HHHhhh
Confidence 554444
No 253
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.65 E-value=1.5e-08 Score=93.13 Aligned_cols=70 Identities=27% Similarity=0.466 Sum_probs=45.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhccchh-HHHHHHHHHHHHhcCCcEEEechhhh
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGEG-EKLVRTLFMVAISRQPCVIFIDEIDS 319 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~g~~-~~~i~~~f~~a~~~~p~Il~IDEiD~ 319 (487)
...+++|+||||||||+||.++++++ |.+++.++..++........ .......+... ....+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l--~~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL--KRVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH--HTSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc--ccccEecccccce
Confidence 35789999999999999999999874 88888999888765432211 11122233322 2457999999954
No 254
>PRK06526 transposase; Provisional
Probab=98.64 E-value=3.4e-08 Score=95.91 Aligned_cols=70 Identities=19% Similarity=0.348 Sum_probs=46.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhccch-hHHHHHHHHHHHHhcCCcEEEechhhhh
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGE-GEKLVRTLFMVAISRQPCVIFIDEIDSI 320 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~g~-~~~~i~~~f~~a~~~~p~Il~IDEiD~l 320 (487)
..+++|+||||||||+||.+++.++ |..++.+++.++....... ....+...+.. ...+.+|+|||++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccC
Confidence 4689999999999999999998874 6677777666654432211 01111122221 235679999999876
No 255
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=9e-07 Score=85.14 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=81.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC--------------ccch---hccchhHHHHHHHHHHHH----
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS--------------SLTS---KWVGEGEKLVRTLFMVAI---- 305 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~--------------~l~~---~~~g~~~~~i~~~f~~a~---- 305 (487)
.+++.+||+||+|+||..+|.++|+.+-+.--.-.|. |+.- ....-....++.+.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4578899999999999999999998853321000111 1100 000112233444433221
Q ss_pred h-cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCC
Q 011393 306 S-RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLP 383 (487)
Q Consensus 306 ~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~P 383 (487)
. ....|++|+++|.| .....+.||..++ .|+.++++|..|+.++.+.+.+++||.. +.++.+
T Consensus 85 e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LE----EPp~~t~fiLit~~~~~lLpTI~SRCq~-~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL-----------NKQSANSLLKLIE----EPPKNTYGIFTTRNENNILNTILSRCVQ-YVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhh-----------CHHHHHHHHHhhc----CCCCCeEEEEEECChHhCchHhhhheee-eecCCh
Confidence 1 23469999999998 4567788999888 5667788888999999999999999984 667665
No 256
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.63 E-value=1.5e-07 Score=91.55 Aligned_cols=72 Identities=28% Similarity=0.408 Sum_probs=50.2
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhccchhHH-HHHHHHHHHHhcCCcEEEechhhhh
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGEGEK-LVRTLFMVAISRQPCVIFIDEIDSI 320 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~g~~~~-~i~~~f~~a~~~~p~Il~IDEiD~l 320 (487)
...+++|+||||||||+||-|+++++ |..++.++..+++......-.. ....-+... -....+|+|||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 35789999999999999999999985 7889999998887654322111 111111110 234579999999664
No 257
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.60 E-value=2.8e-07 Score=97.18 Aligned_cols=169 Identities=24% Similarity=0.310 Sum_probs=91.3
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEE-EecCccc--hhccc--
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFN-VSASSLT--SKWVG-- 291 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~-v~~~~l~--~~~~g-- 291 (487)
.|.|++++|+.|.-.+..-......-.+.-+..-+|||+|.||||||.+.+.+++-+..-.+. -.++.-. ..|+.
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd 509 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKD 509 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEec
Confidence 478899999888766543322211111111233689999999999999999999876443322 0111100 00000
Q ss_pred -hhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHH------hcCCCCCCCCcEEEEEecCCCC
Q 011393 292 -EGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQ------FDGVTSNPNDLVIVMGATNKPQ 364 (487)
Q Consensus 292 -~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~------l~~~~~~~~~~vivI~ttn~~~ 364 (487)
++.+.+-+--... ....+|.+|||+|.|- +..+.++.+.+.+ ..|+...-+-+.-|++++|+..
T Consensus 510 ~dtkqlVLesGALV-LSD~GiCCIDEFDKM~--------dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~ 580 (804)
T KOG0478|consen 510 PDTRQLVLESGALV-LSDNGICCIDEFDKMS--------DSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIR 580 (804)
T ss_pred CccceeeeecCcEE-EcCCceEEchhhhhhh--------HHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeecccc
Confidence 0011100000000 1234699999999992 2233444333322 2243333344566888887432
Q ss_pred -------------CCCHHHHcccccE-EEccCCCHHHHHHHHHH
Q 011393 365 -------------ELDDAVLRRLVKR-IYVPLPDENVRRLLLKH 394 (487)
Q Consensus 365 -------------~ld~al~~Rf~~~-i~i~~Pd~~~r~~il~~ 394 (487)
.|++.|++||+.+ +.++.||...-+.|..+
T Consensus 581 skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~H 624 (804)
T KOG0478|consen 581 SKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADH 624 (804)
T ss_pred ccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHH
Confidence 4689999999954 35566776644444443
No 258
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.60 E-value=2.4e-07 Score=80.22 Aligned_cols=98 Identities=26% Similarity=0.364 Sum_probs=58.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc--------CCeEEEEecCccchh--------------cc--chhHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES--------QATFFNVSASSLTSK--------------WV--GEGEKLVRTLFMVA 304 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~--------~~~~~~v~~~~l~~~--------------~~--g~~~~~i~~~f~~a 304 (487)
...++++||||+|||++++.++... ..+++.+++...... .. .........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4579999999999999999999986 778888887554310 00 11233333444444
Q ss_pred HhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 011393 305 ISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 360 (487)
Q Consensus 305 ~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~tt 360 (487)
......+|+|||+|.|. ....++.+...++ ...-.++++|+.
T Consensus 84 ~~~~~~~lviDe~~~l~----------~~~~l~~l~~l~~----~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF----------SDEFLEFLRSLLN----ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH----------THHHHHHHHHHTC----SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC----------CHHHHHHHHHHHh----CCCCeEEEEECh
Confidence 44444599999999984 1344455544444 223345555544
No 259
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.59 E-value=1.3e-07 Score=94.23 Aligned_cols=71 Identities=21% Similarity=0.299 Sum_probs=49.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhccchh-HHHHHHHHHHHHhcCCcEEEechhhhh
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGEG-EKLVRTLFMVAISRQPCVIFIDEIDSI 320 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~g~~-~~~i~~~f~~a~~~~p~Il~IDEiD~l 320 (487)
..++++|+||+|||||+|+.++|+++ |.++..+..+++........ ...+...+.. -....+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~--l~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDA--VKEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHH--hcCCCEEEEecCCCc
Confidence 35799999999999999999999986 77788888777654432111 1112233332 235679999999653
No 260
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.7e-07 Score=100.83 Aligned_cols=128 Identities=27% Similarity=0.357 Sum_probs=89.9
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccC--CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccc----
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLR--RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLT---- 286 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~--~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~---- 286 (487)
+.|+|++++..++-+.+..... ++. .|...+||.||.|+|||-||+++|..+ .-.|+.++++++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 3589999999999999854322 222 366789999999999999999999985 4568889988532
Q ss_pred -----hhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCC-C------CCcE
Q 011393 287 -----SKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN-P------NDLV 354 (487)
Q Consensus 287 -----~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~------~~~v 354 (487)
..|+|..+ ...+.+..+....+||+|||||.- ...+++-|+..+|...-. . -.++
T Consensus 636 ligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~ 702 (898)
T KOG1051|consen 636 LIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNA 702 (898)
T ss_pred ccCCCcccccchh--HHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccce
Confidence 22555433 235556666666689999999864 456677777777632211 1 1368
Q ss_pred EEEEecCC
Q 011393 355 IVMGATNK 362 (487)
Q Consensus 355 ivI~ttn~ 362 (487)
+||.|+|.
T Consensus 703 I~IMTsn~ 710 (898)
T KOG1051|consen 703 IFIMTSNV 710 (898)
T ss_pred EEEEeccc
Confidence 88888654
No 261
>PRK09183 transposase/IS protein; Provisional
Probab=98.58 E-value=1.3e-07 Score=92.38 Aligned_cols=71 Identities=27% Similarity=0.353 Sum_probs=48.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccchhccch-hHHHHHHHHHHHHhcCCcEEEechhhhh
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLTSKWVGE-GEKLVRTLFMVAISRQPCVIFIDEIDSI 320 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~~~~~g~-~~~~i~~~f~~a~~~~p~Il~IDEiD~l 320 (487)
..+++|+||||||||+|+.+++.. .|..+..+++.++...+... ....+...+... ...+.+++|||++.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 468999999999999999999766 47778788876665432211 111233334332 346789999999875
No 262
>PRK06921 hypothetical protein; Provisional
Probab=98.58 E-value=7.3e-08 Score=94.33 Aligned_cols=68 Identities=24% Similarity=0.309 Sum_probs=45.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhh
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDS 319 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~ 319 (487)
..+++|+||||+|||+|+.++|+++ +..+++++..++....... .......+.. .....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHH--hcCCCEEEEecccc
Confidence 4689999999999999999999985 6677888876654332111 0111112222 23567999999954
No 263
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.55 E-value=3.7e-08 Score=99.58 Aligned_cols=162 Identities=25% Similarity=0.323 Sum_probs=83.2
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc-----c------
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS-----L------ 285 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~-----l------ 285 (487)
.|.|.+.+|..+.=.+.........-....+..-+|||.|.||||||.|.+.+++-....++ +++.. +
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~-~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVY-TSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEE-EECCGSTCCCCCEEECC
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEE-ECCCCcccCCccceecc
Confidence 57899999888764443322211100001233468999999999999999988766544443 22211 1
Q ss_pred ---chhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcC---------CCCCCCCc
Q 011393 286 ---TSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDG---------VTSNPNDL 353 (487)
Q Consensus 286 ---~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~ 353 (487)
.+.|.-+. ..+-. ...+|++|||+|.+-. .....++..|+. +...-+.+
T Consensus 104 d~~~~~~~lea-----Galvl---ad~GiccIDe~dk~~~-----------~~~~~l~eaMEqq~isi~kagi~~~l~ar 164 (331)
T PF00493_consen 104 DPVTGEWVLEA-----GALVL---ADGGICCIDEFDKMKE-----------DDRDALHEAMEQQTISIAKAGIVTTLNAR 164 (331)
T ss_dssp CGGTSSECEEE------HHHH---CTTSEEEECTTTT--C-----------HHHHHHHHHHHCSCEEECTSSSEEEEE--
T ss_pred ccccceeEEeC-----Cchhc---ccCceeeecccccccc-----------hHHHHHHHHHHcCeeccchhhhcccccch
Confidence 11122111 11122 2457999999999821 223445555542 11111235
Q ss_pred EEEEEecCCCC-------------CCCHHHHcccccEEE-ccCCCHHHHHHHHHHHhcc
Q 011393 354 VIVMGATNKPQ-------------ELDDAVLRRLVKRIY-VPLPDENVRRLLLKHKLKG 398 (487)
Q Consensus 354 vivI~ttn~~~-------------~ld~al~~Rf~~~i~-i~~Pd~~~r~~il~~~l~~ 398 (487)
+-|++++|+.. .+++.+++||+..+. ...|+.+.-..+.++.+..
T Consensus 165 ~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 165 CSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp -EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred hhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEec
Confidence 67889988765 468899999996654 3567777677777766654
No 264
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.55 E-value=4.4e-06 Score=98.03 Aligned_cols=192 Identities=17% Similarity=0.255 Sum_probs=107.3
Q ss_pred ChHHHHHhhhccccC---CCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHH
Q 011393 195 DSKLVEMINTAIVDR---SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVAS 271 (487)
Q Consensus 195 ~~~l~~~~~~~~~~~---~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~ 271 (487)
+.++.+.|...+.++ .+...+++++|.+..++.|..++... ....+-|.|+||+|+||||||+++++
T Consensus 160 E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~----------~~~~~vvgI~G~gGiGKTTLA~~l~~ 229 (1153)
T PLN03210 160 EAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE----------SEEVRMVGIWGSSGIGKTTIARALFS 229 (1153)
T ss_pred HHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc----------cCceEEEEEEcCCCCchHHHHHHHHH
Confidence 445666666665544 35567899999999999998877421 12346788999999999999999988
Q ss_pred HcCCeE---EEEecCcc---chhc-----------cchhHHHHHH-------------HHHHHHhcCCcEEEechhhhhh
Q 011393 272 ESQATF---FNVSASSL---TSKW-----------VGEGEKLVRT-------------LFMVAISRQPCVIFIDEIDSIM 321 (487)
Q Consensus 272 ~~~~~~---~~v~~~~l---~~~~-----------~g~~~~~i~~-------------~f~~a~~~~p~Il~IDEiD~l~ 321 (487)
.....| +.++...+ ...+ .......+.. .+......++.+|+|||++..
T Consensus 230 ~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~- 308 (1153)
T PLN03210 230 RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ- 308 (1153)
T ss_pred HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-
Confidence 764332 11111000 0000 0000011111 112222356779999998643
Q ss_pred ccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccC
Q 011393 322 STRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQ 399 (487)
Q Consensus 322 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~ 399 (487)
.....+....+ .. .++ ..||.||.. ..+.+ .++..+.++.|+.++..++|..++-+.
T Consensus 309 ------------~~l~~L~~~~~-~~-~~G--srIIiTTrd-----~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~ 367 (1153)
T PLN03210 309 ------------DVLDALAGQTQ-WF-GSG--SRIIVITKD-----KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKK 367 (1153)
T ss_pred ------------HHHHHHHhhCc-cC-CCC--cEEEEEeCc-----HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCC
Confidence 22223322222 11 112 234445653 23332 356778999999999999998877544
Q ss_pred CCCCCh--hhHHHHHHHcCCC
Q 011393 400 AFSLPG--GDLERLVRETEGY 418 (487)
Q Consensus 400 ~~~l~~--~~l~~La~~t~G~ 418 (487)
.....+ +....+++++.|.
T Consensus 368 ~~~~~~~~~l~~~iv~~c~GL 388 (1153)
T PLN03210 368 NSPPDGFMELASEVALRAGNL 388 (1153)
T ss_pred CCCcHHHHHHHHHHHHHhCCC
Confidence 322111 1234566777764
No 265
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.48 E-value=8.9e-07 Score=93.44 Aligned_cols=175 Identities=22% Similarity=0.259 Sum_probs=113.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHH--cCCeEEEEecCccchh-----ccchhHHHHHHHHHHHHh-----cCCcEEEec
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASE--SQATFFNVSASSLTSK-----WVGEGEKLVRTLFMVAIS-----RQPCVIFID 315 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~--~~~~~~~v~~~~l~~~-----~~g~~~~~i~~~f~~a~~-----~~p~Il~ID 315 (487)
..-++|+.|.|||||-.++++|-.. ...+|+.++|..+... ++|.........+..-+. .....+|+|
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFld 414 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLD 414 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHH
Confidence 3457999999999999999999655 4678999999876533 333322222111111111 123589999
Q ss_pred hhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC------CCCCcEEEEEecCCCC-------CCCHHHHcccccEEEccC
Q 011393 316 EIDSIMSTRMANENDASRRLKSEFLIQFDGVTS------NPNDLVIVMGATNKPQ-------ELDDAVLRRLVKRIYVPL 382 (487)
Q Consensus 316 EiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~------~~~~~vivI~ttn~~~-------~ld~al~~Rf~~~i~i~~ 382 (487)
||..| ...++..||..+....- .-...|-||+||+.+- ..-..+.-|+. .+.+.+
T Consensus 415 eIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~-~~~i~l 482 (606)
T COG3284 415 EIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLN-AFVITL 482 (606)
T ss_pred Hhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhc-Ceeecc
Confidence 99777 45566777776642211 1233578899887541 12333333554 356666
Q ss_pred CCHHHHH---HHHHHHhcc---CCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q 011393 383 PDENVRR---LLLKHKLKG---QAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 383 Pd~~~r~---~il~~~l~~---~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a 434 (487)
|...+|. .++.+++.+ .++.++++.+..|...-+..+.++|.++++.++..+
T Consensus 483 P~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 483 PPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred CchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 7666663 344444433 567789999999998888889999999999987665
No 266
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.46 E-value=2.7e-06 Score=84.03 Aligned_cols=161 Identities=16% Similarity=0.110 Sum_probs=86.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH--cCCe---EEEEecCccc------hh-------c-----cchhHHHHHHHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE--SQAT---FFNVSASSLT------SK-------W-----VGEGEKLVRTLFMV 303 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~--~~~~---~~~v~~~~l~------~~-------~-----~g~~~~~i~~~f~~ 303 (487)
.....|.|+|++|+|||+||+.+++. .... ++.++...-. .. . ...........+..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 34567999999999999999999977 3322 2233332210 00 0 00111223333333
Q ss_pred HHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCC
Q 011393 304 AISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLP 383 (487)
Q Consensus 304 a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~P 383 (487)
.....+++|+||+++... ....+...+... ..+..||.||.... +-...... ...+.+...
T Consensus 97 ~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~----~~~~kilvTTR~~~-v~~~~~~~-~~~~~l~~L 157 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE-------------DLEELREPLPSF----SSGSKILVTTRDRS-VAGSLGGT-DKVIELEPL 157 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH-------------HH-------HCH----HSS-EEEEEESCGG-GGTTHHSC-EEEEECSS-
T ss_pred hhccccceeeeeeecccc-------------cccccccccccc----cccccccccccccc-cccccccc-ccccccccc
Confidence 445568999999997651 122222221111 11245566776432 21111111 357899999
Q ss_pred CHHHHHHHHHHHhccCC---CCCChhhHHHHHHHcCCCCHHHHHHHH
Q 011393 384 DENVRRLLLKHKLKGQA---FSLPGGDLERLVRETEGYSGSDLQALC 427 (487)
Q Consensus 384 d~~~r~~il~~~l~~~~---~~l~~~~l~~La~~t~G~s~~dL~~lv 427 (487)
+.++-.++|........ ....+.....|++.+.| .|-.|..+.
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 99999999999876543 11124567889999877 576666554
No 267
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.45 E-value=7.4e-07 Score=90.98 Aligned_cols=214 Identities=18% Similarity=0.207 Sum_probs=119.9
Q ss_pred ccccChHHHHHHHHHHhhccccC-hhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccchhH
Q 011393 216 EDVAGLEKAKQALMEMVILPAKR-RDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGE 294 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~-~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g~~~ 294 (487)
-+|.|++++|+.|.-+++..... +.-... .+..-+|+|.|.||+.||-|.+.+.+-....++..-... .-+|-+.
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMK-IRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS---SGVGLTA 417 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMK-IRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS---SGVGLTA 417 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCce-eecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC---Cccccch
Confidence 36899999999998877643222 211111 233457999999999999999999887655444322111 1122222
Q ss_pred HHHHHHHH--HHH------hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHh--cCCCCCCCCcEEEEEecCCCC
Q 011393 295 KLVRTLFM--VAI------SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQF--DGVTSNPNDLVIVMGATNKPQ 364 (487)
Q Consensus 295 ~~i~~~f~--~a~------~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l--~~~~~~~~~~vivI~ttn~~~ 364 (487)
..+++-.. ... -...+|.+|||+|.+.... ..+..++..+--..+ .|+...-+-++-|++++|+.+
T Consensus 418 AVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~D----RtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPay 493 (721)
T KOG0482|consen 418 AVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESD----RTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAY 493 (721)
T ss_pred hhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhh----hHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccc
Confidence 22211110 000 0134699999999994321 112233333222222 244433344567888887654
Q ss_pred -------------CCCHHHHcccccEE-EccCCCHHHHHHHHHHHhc------cCCCCC---ChhhHH---HHHHHcCCC
Q 011393 365 -------------ELDDAVLRRLVKRI-YVPLPDENVRRLLLKHKLK------GQAFSL---PGGDLE---RLVRETEGY 418 (487)
Q Consensus 365 -------------~ld~al~~Rf~~~i-~i~~Pd~~~r~~il~~~l~------~~~~~l---~~~~l~---~La~~t~G~ 418 (487)
.|+.+|++||+..+ ....||.+.-..+.++..- ..+..+ +...+. .+++.....
T Consensus 494 GRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~ 573 (721)
T KOG0482|consen 494 GRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPV 573 (721)
T ss_pred cccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCC
Confidence 47999999999543 4455877776666665432 122222 222222 345555566
Q ss_pred CHHHHHHHHHHHHHHhHHh
Q 011393 419 SGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 419 s~~dL~~lv~~A~~~a~~~ 437 (487)
.+.+|..-+-.|-...-++
T Consensus 574 vp~~l~dyi~~AYv~~Rre 592 (721)
T KOG0482|consen 574 VPEALADYITGAYVELRRE 592 (721)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 7788877777665555444
No 268
>PF05729 NACHT: NACHT domain
Probab=98.45 E-value=2.4e-06 Score=76.77 Aligned_cols=140 Identities=18% Similarity=0.252 Sum_probs=73.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcC---------CeEEEEecCccchhc------------cchhHHHHHH-HHHHHHhcC
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQ---------ATFFNVSASSLTSKW------------VGEGEKLVRT-LFMVAISRQ 308 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~---------~~~~~v~~~~l~~~~------------~g~~~~~i~~-~f~~a~~~~ 308 (487)
-++|+|+||+|||++++.++..+. ..++.+.+.+..... .......+.. +........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999987741 123334433322110 0000111111 112233456
Q ss_pred CcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccc--cEEEccCCCHH
Q 011393 309 PCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLV--KRIYVPLPDEN 386 (487)
Q Consensus 309 p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~--~~i~i~~Pd~~ 386 (487)
..+|+||.+|.+...... .........+...+.... .++ +.++.|++ +..... +.+++. ..+.+...+.+
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~~-~~~--~~liit~r-~~~~~~-~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQAL-PPG--VKLIITSR-PRAFPD-LRRRLKQAQILELEPFSEE 153 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhcc-CCC--CeEEEEEc-CChHHH-HHHhcCCCcEEEECCCCHH
Confidence 679999999999653211 111122222222232211 122 33333333 222211 334333 46889899999
Q ss_pred HHHHHHHHHhcc
Q 011393 387 VRRLLLKHKLKG 398 (487)
Q Consensus 387 ~r~~il~~~l~~ 398 (487)
+..++++.+++.
T Consensus 154 ~~~~~~~~~f~~ 165 (166)
T PF05729_consen 154 DIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHhhc
Confidence 999999988764
No 269
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=98.44 E-value=1.5e-07 Score=70.40 Aligned_cols=35 Identities=34% Similarity=0.881 Sum_probs=32.9
Q ss_pred CCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhC
Q 011393 451 RPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFG 485 (487)
Q Consensus 451 ~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~g 485 (487)
++|+++||.+||++++|||++++|++|++|+++||
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 47999999999999999999999999999999999
No 270
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.41 E-value=4.3e-07 Score=89.13 Aligned_cols=137 Identities=21% Similarity=0.367 Sum_probs=76.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCe---EEEEecCccchhccchhHHHHHHHHHHHH-----------hcCCcEEEe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQAT---FFNVSASSLTSKWVGEGEKLVRTLFMVAI-----------SRQPCVIFI 314 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~---~~~v~~~~l~~~~~g~~~~~i~~~f~~a~-----------~~~p~Il~I 314 (487)
.+++||.||+|||||++++.+-..+... ...++++... +...++.+++... .++..|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 4689999999999999999987765432 2334444322 1222333222110 123369999
Q ss_pred chhhhhhccCCCCcchHHHHHHHHHHHHh-c--CCCCCCC------CcEEEEEecCCCC---CCCHHHHcccccEEEccC
Q 011393 315 DEIDSIMSTRMANENDASRRLKSEFLIQF-D--GVTSNPN------DLVIVMGATNKPQ---ELDDAVLRRLVKRIYVPL 382 (487)
Q Consensus 315 DEiD~l~~~~~~~~~~~~~~~~~~ll~~l-~--~~~~~~~------~~vivI~ttn~~~---~ld~al~~Rf~~~i~i~~ 382 (487)
||++.-.... -.. ... -+||+++ + |...... .++.+||+++.+. .+++.+.|.|. .+.++.
T Consensus 107 DDlN~p~~d~--ygt---q~~-iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~-i~~~~~ 179 (272)
T PF12775_consen 107 DDLNMPQPDK--YGT---QPP-IELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFN-ILNIPY 179 (272)
T ss_dssp ETTT-S---T--TS-----HH-HHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEE-EEE---
T ss_pred cccCCCCCCC--CCC---cCH-HHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheE-EEEecC
Confidence 9998653322 111 112 2444443 2 2222211 2577788887543 46778888887 799999
Q ss_pred CCHHHHHHHHHHHhcc
Q 011393 383 PDENVRRLLLKHKLKG 398 (487)
Q Consensus 383 Pd~~~r~~il~~~l~~ 398 (487)
|+.+....|+..++..
T Consensus 180 p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 180 PSDESLNTIFSSILQS 195 (272)
T ss_dssp -TCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhh
Confidence 9999998888877653
No 271
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.39 E-value=4.7e-06 Score=74.39 Aligned_cols=72 Identities=22% Similarity=0.334 Sum_probs=48.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhc----------------------c--chhHHHHHHHHHHH
Q 011393 252 LLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKW----------------------V--GEGEKLVRTLFMVA 304 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~----------------------~--g~~~~~i~~~f~~a 304 (487)
++|+||||+|||+++..++... +.+++.++........ . .............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998875 5667766664332210 0 00111112234455
Q ss_pred HhcCCcEEEechhhhhhcc
Q 011393 305 ISRQPCVIFIDEIDSIMST 323 (487)
Q Consensus 305 ~~~~p~Il~IDEiD~l~~~ 323 (487)
....|.+|+|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 5678889999999998654
No 272
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.37 E-value=1.1e-05 Score=91.97 Aligned_cols=137 Identities=22% Similarity=0.222 Sum_probs=93.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch------hc-cch--hHHHHH-HHHHHHHhcCCcEEEechhh
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS------KW-VGE--GEKLVR-TLFMVAISRQPCVIFIDEID 318 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~------~~-~g~--~~~~i~-~~f~~a~~~~p~Il~IDEiD 318 (487)
.+++||-|.||+|||+|+.++|+..|..++.++.++-+. .+ .++ ++-.++ .-|-.| .+.+..+++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~a-mr~G~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHA-MRDGGWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHH-hhcCCEEEeehhh
Confidence 467999999999999999999999999999999876321 11 111 111122 223333 3345699999996
Q ss_pred hhhccCCCCcchHHHHHHHHHHHHhcCCCC----------CCCCcEEEEEecCCCC------CCCHHHHcccccEEEccC
Q 011393 319 SIMSTRMANENDASRRLKSEFLIQFDGVTS----------NPNDLVIVMGATNKPQ------ELDDAVLRRLVKRIYVPL 382 (487)
Q Consensus 319 ~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~----------~~~~~vivI~ttn~~~------~ld~al~~Rf~~~i~i~~ 382 (487)
.- +..++.-|-.++|.... .-..++.|++|-|+.+ .|+..++.||. ++++..
T Consensus 1622 La-----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFs-vV~~d~ 1689 (4600)
T COG5271 1622 LA-----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFS-VVKMDG 1689 (4600)
T ss_pred hh-----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhh-eEEecc
Confidence 43 34455555555542211 1123577888776543 58999999998 689999
Q ss_pred CCHHHHHHHHHHHhcc
Q 011393 383 PDENVRRLLLKHKLKG 398 (487)
Q Consensus 383 Pd~~~r~~il~~~l~~ 398 (487)
.+.+....|.......
T Consensus 1690 lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1690 LTTDDITHIANKMYPQ 1705 (4600)
T ss_pred cccchHHHHHHhhCCc
Confidence 9998888888776654
No 273
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.31 E-value=6.7e-06 Score=78.65 Aligned_cols=135 Identities=17% Similarity=0.160 Sum_probs=75.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE 328 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~ 328 (487)
..+-.++||+|||||.+++.+|+.+|..++.++|++..+ ...+..++.-+.. ..+.+++||++.|-
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~-~GaW~cfdefnrl~------- 97 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQ-SGAWLCFDEFNRLS------- 97 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHH-HT-EEEEETCCCSS-------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhh-cCchhhhhhhhhhh-------
Confidence 356789999999999999999999999999999988654 3345566654433 35799999999882
Q ss_pred chHHHHHHHHHHHHh----cCCCC---------CCCCcEEEEEecCC----CCCCCHHHHcccccEEEccCCCHHHHHHH
Q 011393 329 NDASRRLKSEFLIQF----DGVTS---------NPNDLVIVMGATNK----PQELDDAVLRRLVKRIYVPLPDENVRRLL 391 (487)
Q Consensus 329 ~~~~~~~~~~ll~~l----~~~~~---------~~~~~vivI~ttn~----~~~ld~al~~Rf~~~i~i~~Pd~~~r~~i 391 (487)
...-.++.+.+..+ ..... .-...+-++.|.|. ...|++.++.-|. .+.+..||.....++
T Consensus 98 -~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFR-pvam~~PD~~~I~ei 175 (231)
T PF12774_consen 98 -EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFR-PVAMMVPDLSLIAEI 175 (231)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEE-EEE--S--HHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhh-eeEEeCCCHHHHHHH
Confidence 11222222222222 11100 00112344455553 3467887777665 688888988755544
Q ss_pred HHHHhccCCCC
Q 011393 392 LKHKLKGQAFS 402 (487)
Q Consensus 392 l~~~l~~~~~~ 402 (487)
.|-..|+.
T Consensus 176 ---~L~s~GF~ 183 (231)
T PF12774_consen 176 ---LLLSQGFK 183 (231)
T ss_dssp ---HHHCCCTS
T ss_pred ---HHHHcCch
Confidence 44445554
No 274
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.29 E-value=6.4e-05 Score=71.43 Aligned_cols=176 Identities=19% Similarity=0.266 Sum_probs=104.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcC---CeEEEEecCccc-----hhccch------------hHHHHHHHHHHHH-hcCC
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSASSLT-----SKWVGE------------GEKLVRTLFMVAI-SRQP 309 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~---~~~~~v~~~~l~-----~~~~g~------------~~~~i~~~f~~a~-~~~p 309 (487)
-+.++|+-|+|||++.|++...++ ...+.++...+. ..++.+ .+..-+.+.+... ...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 578999999999999997766553 223344433221 111111 1222233333333 3456
Q ss_pred cEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC----HHHHcccccEEEccCCCH
Q 011393 310 CVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELD----DAVLRRLVKRIYVPLPDE 385 (487)
Q Consensus 310 ~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld----~al~~Rf~~~i~i~~Pd~ 385 (487)
.++++||++.+... ....+..|...-.+.. . .-.|+.+|-..--..+- ..+..|+.-+|.+++.+.
T Consensus 133 v~l~vdEah~L~~~--------~le~Lrll~nl~~~~~-~-~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 133 VVLMVDEAHDLNDS--------ALEALRLLTNLEEDSS-K-LLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred eEEeehhHhhhChh--------HHHHHHHHHhhccccc-C-ceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 89999999988432 1111111211111111 1 12255555432212121 233348887789999999
Q ss_pred HHHHHHHHHHhccCCCC---CChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHh
Q 011393 386 NVRRLLLKHKLKGQAFS---LPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 386 ~~r~~il~~~l~~~~~~---l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~ 437 (487)
++-..++++.++..+.. +++..+..+...+.| .|.-+..+|..|...++..
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a 256 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSA 256 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHc
Confidence 98888889888764332 367788899999998 5889999999888877664
No 275
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=9.8e-06 Score=89.78 Aligned_cols=199 Identities=21% Similarity=0.277 Sum_probs=127.5
Q ss_pred CcccccCh-HHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCeEEEEec
Q 011393 214 KWEDVAGL-EKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----------QATFFNVSA 282 (487)
Q Consensus 214 ~~~di~G~-~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~----------~~~~~~v~~ 282 (487)
.++-++|. ++-.+.+.+.+. ++..++-+|.|.||+|||.++.-+|+.. +..++.++.
T Consensus 184 kldPvigr~deeirRvi~iL~------------Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 184 KLDPVIGRHDEEIRRVIEILS------------RKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCCccCCchHHHHHHHHHHh------------ccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 36677776 666666666552 2223678999999999999999999873 345666666
Q ss_pred Cccc--hhccchhHHHHHHHHHHHH-hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 011393 283 SSLT--SKWVGEGEKLVRTLFMVAI-SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGA 359 (487)
Q Consensus 283 ~~l~--~~~~g~~~~~i~~~f~~a~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~t 359 (487)
..+. .++.|+.+..++.+...+. ...+.||||||++.+.+...... .-.. ..+|..+-.. +.+.+|||
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~---~~d~-~nlLkp~L~r-----g~l~~IGa 322 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG---AIDA-ANLLKPLLAR-----GGLWCIGA 322 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch---HHHH-HHhhHHHHhc-----CCeEEEec
Confidence 5443 4577888999999998887 44667899999999987654311 1122 2233333221 22788988
Q ss_pred cCCC-----CCCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc----CCCCCChhhHHHHHHH-----cCCCCHHHHHH
Q 011393 360 TNKP-----QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----QAFSLPGGDLERLVRE-----TEGYSGSDLQA 425 (487)
Q Consensus 360 tn~~-----~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~----~~~~l~~~~l~~La~~-----t~G~s~~dL~~ 425 (487)
|..- ..-+|++-+||+ -+.++.|+.+.-..|+...-.. ++..+++..+...+.. +..+-+.-...
T Consensus 323 tT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aid 401 (898)
T KOG1051|consen 323 TTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAID 401 (898)
T ss_pred ccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhccc
Confidence 7532 234899999999 4889999887766566554433 4444455444333322 23344555566
Q ss_pred HHHHHHHHh
Q 011393 426 LCEEAAMMP 434 (487)
Q Consensus 426 lv~~A~~~a 434 (487)
++.+|+...
T Consensus 402 l~dEa~a~~ 410 (898)
T KOG1051|consen 402 LEDEAAALV 410 (898)
T ss_pred HHHHHHHHH
Confidence 667665443
No 276
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.25 E-value=6.8e-06 Score=77.48 Aligned_cols=80 Identities=15% Similarity=0.260 Sum_probs=52.6
Q ss_pred ccCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccchhccc-----------------------hhHHHH
Q 011393 244 GLRRPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLTSKWVG-----------------------EGEKLV 297 (487)
Q Consensus 244 ~~~~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~~~~~g-----------------------~~~~~i 297 (487)
+......-++++||||+|||+++..++.. .+..+++++...+....+. +....+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 33455667899999999999999998764 3667888887652111000 011123
Q ss_pred HHHHHHHHhcCCcEEEechhhhhhcc
Q 011393 298 RTLFMVAISRQPCVIFIDEIDSIMST 323 (487)
Q Consensus 298 ~~~f~~a~~~~p~Il~IDEiD~l~~~ 323 (487)
..+........+.+|+||-+..+...
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~ 112 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRL 112 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHH
Confidence 33444444557899999999998653
No 277
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.24 E-value=2.5e-05 Score=75.65 Aligned_cols=98 Identities=20% Similarity=0.226 Sum_probs=60.1
Q ss_pred ccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC-----CeEEE--EecCccch-hc
Q 011393 218 VAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-----ATFFN--VSASSLTS-KW 289 (487)
Q Consensus 218 i~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~-----~~~~~--v~~~~l~~-~~ 289 (487)
+.|+.-+++.+...+...+..+ ..+.|-.+=|+|++||||.++++.||+.+- .+++. +...++.. ++
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~-----~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ 158 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANP-----NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASK 158 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCC-----CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHH
Confidence 7888888888777775433322 223344566899999999999999999742 22211 11111110 11
Q ss_pred c-chhHHHHHHHHHHHHhcCCcEEEechhhhh
Q 011393 290 V-GEGEKLVRTLFMVAISRQPCVIFIDEIDSI 320 (487)
Q Consensus 290 ~-g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l 320 (487)
+ ...++....+...+..++.+|+++||+|.|
T Consensus 159 ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 159 IEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 1 112334444555566778899999999998
No 278
>PF14516 AAA_35: AAA-like domain
Probab=98.22 E-value=4.5e-05 Score=77.25 Aligned_cols=176 Identities=17% Similarity=0.158 Sum_probs=98.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhccch-------------------------------
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGE------------------------------- 292 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~g~------------------------------- 292 (487)
.++..+.++||..+|||+|...+.+.+ +..++.+++..+.......
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 456789999999999999999986654 7778888876543210000
Q ss_pred hHHHHHHHHHH---HHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCC-CCcEEEEEecCCCCCCCH
Q 011393 293 GEKLVRTLFMV---AISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNP-NDLVIVMGATNKPQELDD 368 (487)
Q Consensus 293 ~~~~i~~~f~~---a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vivI~ttn~~~~ld~ 368 (487)
........|+. .....|-||+|||||.++... .........+....+.....+ -.++.+|.+...+..+..
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-----~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~ 183 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-----QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIIL 183 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc-----chHHHHHHHHHHHHHhcccCcccceEEEEEecCccccccc
Confidence 11112222322 122468899999999996521 112222222222222111111 112222222211111211
Q ss_pred HH-Hc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 011393 369 AV-LR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAM 432 (487)
Q Consensus 369 al-~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~ 432 (487)
.. .+ .+...+.++.-+.++...+++.+ +..++...++.|-..|.|. |.=+..+|...+.
T Consensus 184 ~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~----~~~~~~~~~~~l~~~tgGh-P~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 184 DINQSPFNIGQPIELPDFTPEEVQELAQRY----GLEFSQEQLEQLMDWTGGH-PYLVQKACYLLVE 245 (331)
T ss_pred CCCCCCcccccceeCCCCCHHHHHHHHHhh----hccCCHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 11 11 23456778888888888876655 4556777899999999884 6656666655543
No 279
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.21 E-value=3.5e-06 Score=85.82 Aligned_cols=102 Identities=19% Similarity=0.287 Sum_probs=59.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCC-eEEEEecCccchhccch------hHHHHHHHHHHHHhcCCcEEEechhhh
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQA-TFFNVSASSLTSKWVGE------GEKLVRTLFMVAISRQPCVIFIDEIDS 319 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~-~~~~v~~~~l~~~~~g~------~~~~i~~~f~~a~~~~p~Il~IDEiD~ 319 (487)
.+++|++||||+|+|||+|+-.+...+.. .-..+....++...... ....+..+... ......||+|||++.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~-l~~~~~lLcfDEF~V 138 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADE-LAKESRLLCFDEFQV 138 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHH-HHhcCCEEEEeeeec
Confidence 46799999999999999999999888754 23333333333221111 01112222211 123345999999975
Q ss_pred hhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 011393 320 IMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 363 (487)
Q Consensus 320 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~ 363 (487)
- +-+...++..|+..+-. ..+++|+|+|.+
T Consensus 139 ~--------DiaDAmil~rLf~~l~~------~gvvlVaTSN~~ 168 (362)
T PF03969_consen 139 T--------DIADAMILKRLFEALFK------RGVVLVATSNRP 168 (362)
T ss_pred c--------chhHHHHHHHHHHHHHH------CCCEEEecCCCC
Confidence 3 22334455555555431 227888888865
No 280
>KOG4509 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=4.4e-06 Score=73.86 Aligned_cols=68 Identities=19% Similarity=0.212 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCC-CCCcchhhHHHHHHHHHHHHHHHHH
Q 011393 53 YFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPV-PSYISTSEHEKVKSYRQKISKWQSQ 120 (487)
Q Consensus 53 ~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~-~~~~~~~~~~k~~~y~~rae~~k~~ 120 (487)
....|-..+.+||+.|..|+|..|+.+|++||+++.++++.-+ +...+-.++.++..|++|++.+++.
T Consensus 11 ~~~aAa~iL~~AVe~d~e~k~pqALl~YkeGIdLi~e~lk~~~ldna~R~~i~~k~s~Ym~ka~diekY 79 (247)
T KOG4509|consen 11 LLKAAAPILCDAVEDDKEGKVPQALLCYKEGIDLIAEALKGMKLDNADRCKIMAKFSDYMDKAADIEKY 79 (247)
T ss_pred hhhhhhhHHHHHhcccccccccHHHHHHhhhHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999998664 7778889999999999999988766
No 281
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.13 E-value=1.3e-05 Score=83.92 Aligned_cols=167 Identities=20% Similarity=0.292 Sum_probs=89.1
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC-------------
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS------------- 283 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~------------- 283 (487)
.|.|++++|.++.-.+..-...-.-.....+.--++||+|.||||||-+.+.+++-....++..--.
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~Kd 529 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKD 529 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeC
Confidence 4788999998887666432221111101112335799999999999999999999876655532211
Q ss_pred ccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHH-----HHHHHHHHhcCCCCCCCCcEEEEE
Q 011393 284 SLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRR-----LKSEFLIQFDGVTSNPNDLVIVMG 358 (487)
Q Consensus 284 ~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~-----~~~~ll~~l~~~~~~~~~~vivI~ 358 (487)
-+...|.-+....+ . ...+|.+|||+|.+-......-++++.. ...-+...|. .++.||+
T Consensus 530 PvtrEWTLEaGALV-----L---ADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLq-------ArctvIA 594 (854)
T KOG0477|consen 530 PVTREWTLEAGALV-----L---ADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQ-------ARCTVIA 594 (854)
T ss_pred CccceeeeccCeEE-----E---ccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHH-------hhhhhhe
Confidence 11112221111110 1 1346999999999943322111121110 0111222222 3467888
Q ss_pred ecCCCC-------------CCCHHHHcccccEEEccC---CCHHHH--HHHHHHHhcc
Q 011393 359 ATNKPQ-------------ELDDAVLRRLVKRIYVPL---PDENVR--RLLLKHKLKG 398 (487)
Q Consensus 359 ttn~~~-------------~ld~al~~Rf~~~i~i~~---Pd~~~r--~~il~~~l~~ 398 (487)
|+|+.. .|..++++||+....+.. |-.+++ .-++..|.+.
T Consensus 595 AanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~ 652 (854)
T KOG0477|consen 595 AANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRH 652 (854)
T ss_pred ecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhc
Confidence 888621 467899999984433332 434443 3344555543
No 282
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.12 E-value=4.2e-06 Score=70.25 Aligned_cols=23 Identities=43% Similarity=0.858 Sum_probs=20.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 011393 252 LLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~~ 274 (487)
|.||||||+|||++|+.+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998764
No 283
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.11 E-value=0.0001 Score=65.15 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
...|+++|+||+|||+++.-++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4579999999999999999999775
No 284
>PHA00729 NTP-binding motif containing protein
Probab=98.09 E-value=1.1e-05 Score=76.36 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=23.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
..|+|+|+||||||+||.+++.+++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 285
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.07 E-value=9.1e-06 Score=76.90 Aligned_cols=111 Identities=20% Similarity=0.214 Sum_probs=56.3
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc--cc--------hhccchhHHHHHHHHHHHH--hcCCcEEEe
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS--LT--------SKWVGEGEKLVRTLFMVAI--SRQPCVIFI 314 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~--l~--------~~~~g~~~~~i~~~f~~a~--~~~p~Il~I 314 (487)
+.+..+||||+||+|||++|+.++.. .-++..+.+. +. .......-..+.+.+.... .....+|+|
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVI 87 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVI 87 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEE
Confidence 33466999999999999999999632 2233333211 00 0000011112222222222 234679999
Q ss_pred chhhhhhc------cCC--C--CcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 011393 315 DEIDSIMS------TRM--A--NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 360 (487)
Q Consensus 315 DEiD~l~~------~~~--~--~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~tt 360 (487)
|.++.|.. .+. . .....-......|+..+..+.. .+.+|++++-.
T Consensus 88 DsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~-~g~nII~tAhe 142 (220)
T TIGR01618 88 DNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE-SNKNIYATAWE 142 (220)
T ss_pred ecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh-CCCcEEEEEee
Confidence 99999854 111 1 1122223344455555554433 34456666543
No 286
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.05 E-value=2.5e-05 Score=76.73 Aligned_cols=163 Identities=19% Similarity=0.294 Sum_probs=95.2
Q ss_pred cccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHH---HHcCCeEEEEecCccch----
Q 011393 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVA---SESQATFFNVSASSLTS---- 287 (487)
Q Consensus 215 ~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA---~~~~~~~~~v~~~~l~~---- 287 (487)
--.+.|..+..+.|.+++..-.. ..-...+++.||.|+|||++.-..- ++.|-+|+.+.......
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~--------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTIL--------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHH--------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 33567877777777776642111 1235789999999999999876553 35666776655432211
Q ss_pred -----------------hccchhHHHHHHHHHHHHh-----cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcC
Q 011393 288 -----------------KWVGEGEKLVRTLFMVAIS-----RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDG 345 (487)
Q Consensus 288 -----------------~~~g~~~~~i~~~f~~a~~-----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~ 345 (487)
+..|.....+..+++.... ..+.|.++||||.+++.. + +..+...+|
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~--------r--QtllYnlfD- 163 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS--------R--QTLLYNLFD- 163 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch--------h--hHHHHHHHH-
Confidence 1122223333333333322 123455678999997642 1 112222333
Q ss_pred CCCCCCCcEEEEEecCCCC---CCCHHHHcccccE-EEccC-CCHHHHHHHHHHHh
Q 011393 346 VTSNPNDLVIVMGATNKPQ---ELDDAVLRRLVKR-IYVPL-PDENVRRLLLKHKL 396 (487)
Q Consensus 346 ~~~~~~~~vivI~ttn~~~---~ld~al~~Rf~~~-i~i~~-Pd~~~r~~il~~~l 396 (487)
+......++.|||.|.+.+ .|...+.+||.++ |+++. ....+-..+++..+
T Consensus 164 isqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 3333455688888876655 4567888899865 55554 35677788888776
No 287
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=0.00021 Score=67.79 Aligned_cols=151 Identities=11% Similarity=0.024 Sum_probs=103.3
Q ss_pred CCCCceeEEeCCCC-CcHHHHHHHHHHHcCC---------eEEEEecCccchhc-cchhHHHHHHHHHHH----HhcCCc
Q 011393 246 RRPARGLLLFGPPG-NGKTMLAKAVASESQA---------TFFNVSASSLTSKW-VGEGEKLVRTLFMVA----ISRQPC 310 (487)
Q Consensus 246 ~~~~~~iLL~GppG-tGKT~la~aiA~~~~~---------~~~~v~~~~l~~~~-~g~~~~~i~~~f~~a----~~~~p~ 310 (487)
.+-.+..||.|..+ +||..++..++..+.+ .++.+.+..-..+. ..-+-..+|.+.... ......
T Consensus 12 ~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~K 91 (263)
T PRK06581 12 NKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYK 91 (263)
T ss_pred CcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcE
Confidence 34467899999998 9999999888876532 34444332100000 001233445544433 233456
Q ss_pred EEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHH
Q 011393 311 VIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRL 390 (487)
Q Consensus 311 Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~ 390 (487)
|++|+++|.| .....+.||..++ .|+..+++|..|..+..+.+.+++||. .+.++.|+...-.+
T Consensus 92 ViII~~ae~m-----------t~~AANALLKtLE----EPP~~t~fILit~~~~~LLpTIrSRCq-~i~~~~p~~~~~~e 155 (263)
T PRK06581 92 VAIIYSAELM-----------NLNAANSCLKILE----DAPKNSYIFLITSRAASIISTIRSRCF-KINVRSSILHAYNE 155 (263)
T ss_pred EEEEechHHh-----------CHHHHHHHHHhhc----CCCCCeEEEEEeCChhhCchhHhhceE-EEeCCCCCHHHHHH
Confidence 9999999998 4567788999888 456667888888889999999999998 69999999988888
Q ss_pred HHHHHhccCCCCCChhhHHHHHHHc
Q 011393 391 LLKHKLKGQAFSLPGGDLERLVRET 415 (487)
Q Consensus 391 il~~~l~~~~~~l~~~~l~~La~~t 415 (487)
++...+.... ....++.|.+.+
T Consensus 156 ~~~~~~~p~~---~~~~l~~i~~~~ 177 (263)
T PRK06581 156 LYSQFIQPIA---DNKTLDFINRFT 177 (263)
T ss_pred HHHHhccccc---ccHHHHHHHHHh
Confidence 8777665322 345566666654
No 288
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.99 E-value=0.00019 Score=74.98 Aligned_cols=201 Identities=18% Similarity=0.193 Sum_probs=98.4
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh---------------ccc-----hhHHHHHHHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK---------------WVG-----EGEKLVRTLFMV 303 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~---------------~~g-----~~~~~i~~~f~~ 303 (487)
.++..++|+|++|+|||+++..+|..+ +..+..+++..+... ..+ .....++..++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 346789999999999999999998865 556666665433210 011 111223344444
Q ss_pred HHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHccccc-----EE
Q 011393 304 AISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVK-----RI 378 (487)
Q Consensus 304 a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~-----~i 378 (487)
+.. ..+|+||..-.+. .....+.++.....-. .+...++|+-++...+.++. .++|.. .+
T Consensus 173 ~~~--~DvVIIDTAGr~~---------~d~~lm~El~~l~~~~--~pdevlLVvda~~gq~av~~--a~~F~~~l~i~gv 237 (437)
T PRK00771 173 FKK--ADVIIVDTAGRHA---------LEEDLIEEMKEIKEAV--KPDEVLLVIDATIGQQAKNQ--AKAFHEAVGIGGI 237 (437)
T ss_pred hhc--CCEEEEECCCccc---------chHHHHHHHHHHHHHh--cccceeEEEeccccHHHHHH--HHHHHhcCCCCEE
Confidence 433 2799999885441 1223333333222211 22333555555443222221 122321 23
Q ss_pred EccCCCHHHHHHHHHHHhc--cC-------CC---CCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhccc
Q 011393 379 YVPLPDENVRRLLLKHKLK--GQ-------AF---SLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVK 446 (487)
Q Consensus 379 ~i~~Pd~~~r~~il~~~l~--~~-------~~---~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~ 446 (487)
-+.-.|...+.--+-.... +. |- ++...+.+.++.+.-|+ +|+..|++.|...--.+..... ..
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgm--gd~~~l~e~~~~~~~~~~~~~~--~~ 313 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGM--GDLESLLEKVEEALDEEEEEKD--VE 313 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCC--CChHHHHHHHHHhhhHHHHHHH--HH
Confidence 3444454444322211111 11 11 12344667788877664 7899998877543111100000 00
Q ss_pred cccCCCCcHHHHHHHHHhhC
Q 011393 447 ANQLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 447 ~~~~~~l~~~df~~al~~~~ 466 (487)
.......+.+||.+.++.++
T Consensus 314 ~~~~~~f~l~d~~~q~~~~~ 333 (437)
T PRK00771 314 KMMKGKFTLKDMYKQLEAMN 333 (437)
T ss_pred HHHcCCcCHHHHHHHHHHHH
Confidence 11113478889988766544
No 289
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.98 E-value=7.2e-05 Score=68.90 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=45.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccchhcc------c-----------------------hhH-----
Q 011393 252 LLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLTSKWV------G-----------------------EGE----- 294 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~~~~~------g-----------------------~~~----- 294 (487)
+|++||||||||+++..++.+ .|.++++++..+-..... | ...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 789999999999999988765 366676666532211100 0 000
Q ss_pred HHHHHHHHHHHhcCCcEEEechhhhhhc
Q 011393 295 KLVRTLFMVAISRQPCVIFIDEIDSIMS 322 (487)
Q Consensus 295 ~~i~~~f~~a~~~~p~Il~IDEiD~l~~ 322 (487)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1123444455567899999999998754
No 290
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.96 E-value=0.00026 Score=72.98 Aligned_cols=159 Identities=24% Similarity=0.327 Sum_probs=84.2
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe----cCccchhccc
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS----ASSLTSKWVG 291 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~----~~~l~~~~~g 291 (487)
.|.|.+++|+++.=++..-.+. .+-.+. .+..-+|||.|.|||.|+-|.+-+-.-....+|.-- +..+......
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK-~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~R 410 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRK-RLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIR 410 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccc-cCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEe
Confidence 5889999999987665432221 111222 233467999999999999999998776555444311 0111110000
Q ss_pred hhHHHHHHHHHH--H-HhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHh--cCCCCCCCCcEEEEEecCCCC--
Q 011393 292 EGEKLVRTLFMV--A-ISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQF--DGVTSNPNDLVIVMGATNKPQ-- 364 (487)
Q Consensus 292 ~~~~~i~~~f~~--a-~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l--~~~~~~~~~~vivI~ttn~~~-- 364 (487)
.. ..+.+.-. | --...+|++|||+|.+-.. +.-+..+...+--..+ .|+...-+.+.-|++++|.+.
T Consensus 411 D~--~tReFylEGGAMVLADgGVvCIDEFDKMre~----DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGR 484 (729)
T KOG0481|consen 411 DP--STREFYLEGGAMVLADGGVVCIDEFDKMRED----DRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGR 484 (729)
T ss_pred cC--CcceEEEecceEEEecCCEEEeehhhccCch----hhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCcccc
Confidence 00 00000000 0 0113469999999998321 1111222222211112 344433344566788887652
Q ss_pred -----------CCCHHHHcccccEEEccC
Q 011393 365 -----------ELDDAVLRRLVKRIYVPL 382 (487)
Q Consensus 365 -----------~ld~al~~Rf~~~i~i~~ 382 (487)
++-+.+++||+..+-+..
T Consensus 485 yDd~Kt~~dNIDf~~TILSRFDmIFIVKD 513 (729)
T KOG0481|consen 485 YDDTKTGEDNIDFMPTILSRFDMIFIVKD 513 (729)
T ss_pred ccccCCcccccchhhhHhhhccEEEEEec
Confidence 134899999997655544
No 291
>PHA02624 large T antigen; Provisional
Probab=97.94 E-value=6.2e-05 Score=80.05 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=67.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMA 326 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~ 326 (487)
+..+.++|+||||||||+++.+|++.++...+.++++.-.+. |...-.....+.+|||+-.-+.....
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~ 496 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKD 496 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccccc
Confidence 345689999999999999999999999877888875443221 22111112247777777432221000
Q ss_pred -CcchHHHHHHHHHHHHhcCC--------CCCCC---CcEEEEEecCCCCCCCHHHHcccccEEEccC
Q 011393 327 -NENDASRRLKSEFLIQFDGV--------TSNPN---DLVIVMGATNKPQELDDAVLRRLVKRIYVPL 382 (487)
Q Consensus 327 -~~~~~~~~~~~~ll~~l~~~--------~~~~~---~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~ 382 (487)
....... -+.-|...|||- ..++. .+ -.|.|+| ...|+..+.-||.+.+.|..
T Consensus 497 Lp~G~~~d-Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~P-PlliT~N-ey~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 497 LPSGQGMN-NLDNLRDYLDGSVPVNLEKKHLNKRSQIFP-PGIVTMN-EYLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred CCcccccc-hhhHHHhhcCCCCccccchhccCchhccCC-CeEEeec-CcccchhHHHHHHHhccccc
Confidence 0000000 012233444543 10100 01 1234566 36789999999998888864
No 292
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.91 E-value=5.6e-05 Score=74.99 Aligned_cols=105 Identities=19% Similarity=0.269 Sum_probs=58.8
Q ss_pred hccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeE-EEEecCccch-------hccchhHHHHHHHHHHHHhcCCcEEEe
Q 011393 243 TGLRRPARGLLLFGPPGNGKTMLAKAVASESQATF-FNVSASSLTS-------KWVGEGEKLVRTLFMVAISRQPCVIFI 314 (487)
Q Consensus 243 ~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~-~~v~~~~l~~-------~~~g~~~~~i~~~f~~a~~~~p~Il~I 314 (487)
.+...+++|+.||||-|+|||+|.-.+...+...- ..+....++. ...|++. .+..+ .......-.||+|
T Consensus 59 ~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~d-pl~~i-A~~~~~~~~vLCf 136 (367)
T COG1485 59 GRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTD-PLPPI-ADELAAETRVLCF 136 (367)
T ss_pred ccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCC-ccHHH-HHHHHhcCCEEEe
Confidence 33345789999999999999999999988765432 2333222221 1222221 11111 1111233469999
Q ss_pred chhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 011393 315 DEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 363 (487)
Q Consensus 315 DEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~ 363 (487)
||++.= +-...-++..|+..|-. ..|++|+|+|.+
T Consensus 137 DEF~Vt--------DI~DAMiL~rL~~~Lf~------~GV~lvaTSN~~ 171 (367)
T COG1485 137 DEFEVT--------DIADAMILGRLLEALFA------RGVVLVATSNTA 171 (367)
T ss_pred eeeeec--------ChHHHHHHHHHHHHHHH------CCcEEEEeCCCC
Confidence 999632 22233444455544431 237888888764
No 293
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.91 E-value=1.8e-05 Score=83.78 Aligned_cols=72 Identities=28% Similarity=0.505 Sum_probs=52.3
Q ss_pred hhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC-CeEEEEe
Q 011393 203 NTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-ATFFNVS 281 (487)
Q Consensus 203 ~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~-~~~~~v~ 281 (487)
.+....+|| -|+|+.|++++++.+.+++..... ++.....-++|.||||+|||+||++||+.+. .+++.+.
T Consensus 65 ~~~~i~ry~--fF~d~yGlee~ieriv~~l~~Aa~------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~k 136 (644)
T PRK15455 65 SNRVIKRYP--AFEEFYGMEEAIEQIVSYFRHAAQ------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLK 136 (644)
T ss_pred ccccccccc--chhcccCcHHHHHHHHHHHHHHHH------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeec
Confidence 334455565 577999999999999988842221 2333456789999999999999999998753 4566554
Q ss_pred c
Q 011393 282 A 282 (487)
Q Consensus 282 ~ 282 (487)
+
T Consensus 137 g 137 (644)
T PRK15455 137 A 137 (644)
T ss_pred C
Confidence 4
No 294
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.90 E-value=1.5e-05 Score=74.37 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=57.2
Q ss_pred eEEeCCCCCcHHHHHHHH-HHH---cCCeEEEEecCccchhccch----hHH-------------HHHHHHHHHHhcCCc
Q 011393 252 LLLFGPPGNGKTMLAKAV-ASE---SQATFFNVSASSLTSKWVGE----GEK-------------LVRTLFMVAISRQPC 310 (487)
Q Consensus 252 iLL~GppGtGKT~la~ai-A~~---~~~~~~~v~~~~l~~~~~g~----~~~-------------~i~~~f~~a~~~~p~ 310 (487)
.+++|.||+|||+.|-.. ... .|.+++. +...+.-..... ... ....+.........+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999987555 333 3666554 433222111100 000 001111111112568
Q ss_pred EEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccC
Q 011393 311 VIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPL 382 (487)
Q Consensus 311 Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~ 382 (487)
+|+|||++.+++.+...... ....+ +++.... ...+-|+.+|..+..||+.+++.....+.+..
T Consensus 82 liviDEa~~~~~~r~~~~~~-~~~~~-~~l~~hR------h~g~diiliTQ~~~~id~~ir~lve~~~~~~k 145 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKK-VPEII-EFLAQHR------HYGWDIILITQSPSQIDKFIRDLVEYHYHCRK 145 (193)
T ss_dssp EEEETTGGGTSB---T-T-----HHH-HGGGGCC------CTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE
T ss_pred EEEEECChhhcCCCcccccc-chHHH-HHHHHhC------cCCcEEEEEeCCHHHHhHHHHHHHheEEEEEe
Confidence 99999999999887542111 12222 3332222 23367788899999999999987776665543
No 295
>PRK08118 topology modulation protein; Reviewed
Probab=97.89 E-value=2.7e-05 Score=70.82 Aligned_cols=33 Identities=24% Similarity=0.528 Sum_probs=30.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEec
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~ 282 (487)
..|++.||||+||||+|+.+++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 358999999999999999999999999988774
No 296
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.89 E-value=7.3e-05 Score=71.35 Aligned_cols=76 Identities=22% Similarity=0.368 Sum_probs=48.9
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccchhcc----c-------------------hhHHHHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLTSKWV----G-------------------EGEKLVRTL 300 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~~~~~----g-------------------~~~~~i~~~ 300 (487)
..+.-++|+||||+|||+++..+|.+ .+..+++++...+..... . +....+..+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 100 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRKA 100 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHHH
Confidence 44567899999999999999999875 367788888763211110 0 001111222
Q ss_pred HHHHHhcCCcEEEechhhhhhcc
Q 011393 301 FMVAISRQPCVIFIDEIDSIMST 323 (487)
Q Consensus 301 f~~a~~~~p~Il~IDEiD~l~~~ 323 (487)
..... ..+.+|+||-+..++..
T Consensus 101 ~~~~~-~~~~lvVIDsi~al~~~ 122 (225)
T PRK09361 101 EKLAK-ENVGLIVLDSATSLYRL 122 (225)
T ss_pred HHHHH-hcccEEEEeCcHHHhHH
Confidence 22221 57899999999988754
No 297
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.87 E-value=1.3e-05 Score=68.31 Aligned_cols=31 Identities=32% Similarity=0.629 Sum_probs=28.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCeEEEEec
Q 011393 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~~~~~~~v~~ 282 (487)
|+|.||||+||||+|+.+|..++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988876654
No 298
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.86 E-value=0.00013 Score=74.70 Aligned_cols=61 Identities=20% Similarity=0.330 Sum_probs=39.3
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHH----cCCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhh
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASE----SQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSI 320 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~----~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l 320 (487)
...++++.||+|||||+++.+++.. .| ..++.+.+..... . ..+ -.-....+|+|||+..+
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~----~---~~l--g~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS----T---RQI--GLVGRWDVVAFDEVATL 272 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH----H---HHH--hhhccCCEEEEEcCCCC
Confidence 3578999999999999999999776 23 2233333322111 1 111 12245679999999886
No 299
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=0.0003 Score=72.38 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=69.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc-------CCeEEEEecCccch--h--------------ccchhHHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES-------QATFFNVSASSLTS--K--------------WVGEGEKLVRTLFMVAI 305 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~-------~~~~~~v~~~~l~~--~--------------~~g~~~~~i~~~f~~a~ 305 (487)
+..++|+||+|+||||++..+|..+ +..+..+++..+.. . ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 4679999999999999999998764 23444444433211 0 1111222333333322
Q ss_pred hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccc----cEEEcc
Q 011393 306 SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLV----KRIYVP 381 (487)
Q Consensus 306 ~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~----~~i~i~ 381 (487)
....+|+||.+..+.. ....+.++...++... .+...++|+.+|.....+... ..+|. ..+-+.
T Consensus 253 -~~~DlVLIDTaGr~~~---------~~~~l~el~~~l~~~~-~~~e~~LVlsat~~~~~~~~~-~~~~~~~~~~~~I~T 320 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPK---------DFMKLAEMKELLNACG-RDAEFHLAVSSTTKTSDVKEI-FHQFSPFSYKTVIFT 320 (388)
T ss_pred -CCCCEEEEcCCCCCcc---------CHHHHHHHHHHHHhcC-CCCeEEEEEcCCCCHHHHHHH-HHHhcCCCCCEEEEE
Confidence 4457999999976521 1112334444444332 122457888888776666643 34332 245555
Q ss_pred CCCHHHHH
Q 011393 382 LPDENVRR 389 (487)
Q Consensus 382 ~Pd~~~r~ 389 (487)
-.|...+.
T Consensus 321 KlDet~~~ 328 (388)
T PRK12723 321 KLDETTCV 328 (388)
T ss_pred eccCCCcc
Confidence 55655544
No 300
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.84 E-value=0.00011 Score=73.36 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=50.9
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccchh----------------ccchhHHHHHHHHHHHHhc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLTSK----------------WVGEGEKLVRTLFMVAISR 307 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~~~----------------~~g~~~~~i~~~f~~a~~~ 307 (487)
.+..-++|+||||||||+|+..++.+ .+.+++++++...... .....+..+..+....+..
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~ 132 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSG 132 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcc
Confidence 34567899999999999998887654 3667777766442211 0111233343343444567
Q ss_pred CCcEEEechhhhhhcc
Q 011393 308 QPCVIFIDEIDSIMST 323 (487)
Q Consensus 308 ~p~Il~IDEiD~l~~~ 323 (487)
.+.+|+||-+-.|.+.
T Consensus 133 ~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 133 AVDIIVVDSVAALVPK 148 (321)
T ss_pred CCcEEEEcchhhhccc
Confidence 7899999999999764
No 301
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.84 E-value=9.9e-05 Score=77.66 Aligned_cols=77 Identities=26% Similarity=0.369 Sum_probs=54.9
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhcc------c--------hhHHHHHHHHHHHHhcCC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWV------G--------EGEKLVRTLFMVAISRQP 309 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~------g--------~~~~~i~~~f~~a~~~~p 309 (487)
.+..-++|+||||+|||+|+..+|... +.++++++..+...... + ..+..+..++.......|
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~ 157 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKP 157 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCC
Confidence 445678999999999999999998764 67788888765332211 1 012234556666666789
Q ss_pred cEEEechhhhhhcc
Q 011393 310 CVIFIDEIDSIMST 323 (487)
Q Consensus 310 ~Il~IDEiD~l~~~ 323 (487)
.+|+||.+..+...
T Consensus 158 ~lVVIDSIq~l~~~ 171 (446)
T PRK11823 158 DLVVIDSIQTMYSP 171 (446)
T ss_pred CEEEEechhhhccc
Confidence 99999999998654
No 302
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.84 E-value=4.1e-05 Score=70.16 Aligned_cols=59 Identities=24% Similarity=0.369 Sum_probs=38.1
Q ss_pred ccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe---EEEEecCcc
Q 011393 218 VAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT---FFNVSASSL 285 (487)
Q Consensus 218 i~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~---~~~v~~~~l 285 (487)
++|.++..+.|...+. . .....++.++|+|++|+|||++++.+...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~--------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-A--------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-G--------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-H--------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 6899999999988884 1 122345789999999999999999997765333 777666554
No 303
>PRK04296 thymidine kinase; Provisional
Probab=97.82 E-value=0.00015 Score=67.46 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=41.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC----c----cchhccchh-----HHHHHHHHHHH--HhcCCcEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS----S----LTSKWVGEG-----EKLVRTLFMVA--ISRQPCVI 312 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~----~----l~~~~~g~~-----~~~i~~~f~~a--~~~~p~Il 312 (487)
-++++||+|+|||+++..++.++ +..++.+.+. . +.+. .|.. ......++..+ ....+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 47899999999999998888764 5566655431 1 1111 1110 01122333332 23466899
Q ss_pred Eechhhhh
Q 011393 313 FIDEIDSI 320 (487)
Q Consensus 313 ~IDEiD~l 320 (487)
+|||++.|
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999765
No 304
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.82 E-value=0.0013 Score=75.68 Aligned_cols=160 Identities=23% Similarity=0.300 Sum_probs=86.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEec--Cccc-hhc-------c-----c---------------hhHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA--SSLT-SKW-------V-----G---------------EGEKLVR 298 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~--~~l~-~~~-------~-----g---------------~~~~~i~ 298 (487)
.+-++++||+|.|||+++..++...+ ++..++. .+-. ..+ + + .....+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 35689999999999999999988766 5444443 2211 000 0 0 0011122
Q ss_pred HHHHHHH-hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccE
Q 011393 299 TLFMVAI-SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKR 377 (487)
Q Consensus 299 ~~f~~a~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~ 377 (487)
.++.... ...|.+|+|||+|.+-. ......+..|+..+ +...++|| ++.....++-.-++.-...
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~~-------~~~~~~l~~l~~~~------~~~~~lv~-~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLITN-------PEIHEAMRFFLRHQ------PENLTLVV-LSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCCC-------hHHHHHHHHHHHhC------CCCeEEEE-EeCCCCCCchHhHHhcCcc
Confidence 2333222 25789999999998721 12233444444322 12223444 4543222321111111112
Q ss_pred EEcc----CCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHH
Q 011393 378 IYVP----LPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALC 427 (487)
Q Consensus 378 i~i~----~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv 427 (487)
+.+. ..+.++-.+++...+ +..+++.++..|.+.|+|+ +.-|..+.
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~---~~~~~~~~~~~l~~~t~Gw-p~~l~l~~ 226 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRL---SSPIEAAESSRLCDDVEGW-ATALQLIA 226 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCCh-HHHHHHHH
Confidence 3343 557788878776543 3456889999999999996 44454443
No 305
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.80 E-value=0.00027 Score=72.47 Aligned_cols=77 Identities=25% Similarity=0.372 Sum_probs=53.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhc------cc--------hhHHHHHHHHHHHHhcCC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKW------VG--------EGEKLVRTLFMVAISRQP 309 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~------~g--------~~~~~i~~~f~~a~~~~p 309 (487)
.+..-++|+|+||+|||+|+..+|... +.++++++..+-.... .+ ..+..+..+++......|
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~ 159 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKP 159 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCC
Confidence 445678999999999999999998764 4577777765432211 01 012234556666667789
Q ss_pred cEEEechhhhhhcc
Q 011393 310 CVIFIDEIDSIMST 323 (487)
Q Consensus 310 ~Il~IDEiD~l~~~ 323 (487)
.+|+||++..+...
T Consensus 160 ~lVVIDSIq~l~~~ 173 (372)
T cd01121 160 DLVIIDSIQTVYSS 173 (372)
T ss_pred cEEEEcchHHhhcc
Confidence 99999999998654
No 306
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.77 E-value=7.5e-05 Score=69.79 Aligned_cols=98 Identities=22% Similarity=0.325 Sum_probs=51.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhcc----chhHHHHHHHHHHHH---------hcCCcEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWV----GEGEKLVRTLFMVAI---------SRQPCVIF 313 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~----g~~~~~i~~~f~~a~---------~~~p~Il~ 313 (487)
+.+++.||||||||++++.+...+ +..++.+.++.-....+ +.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 568899999999999999986653 66777666543221111 111112222211110 12347999
Q ss_pred echhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 011393 314 IDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 362 (487)
Q Consensus 314 IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~ 362 (487)
|||+-.+ ....+..++..... .+.+++++|-.+.
T Consensus 99 VDEasmv-----------~~~~~~~ll~~~~~----~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMV-----------DSRQLARLLRLAKK----SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG------------BHHHHHHHHHHS-T-----T-EEEEEE-TTS
T ss_pred Eeccccc-----------CHHHHHHHHHHHHh----cCCEEEEECCcch
Confidence 9999776 33445555555443 2345777776553
No 307
>PRK07261 topology modulation protein; Provisional
Probab=97.76 E-value=6.1e-05 Score=68.80 Aligned_cols=34 Identities=18% Similarity=0.412 Sum_probs=29.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~ 284 (487)
.|++.|+||+||||||+.++..++.+++..+.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 4899999999999999999999998888766433
No 308
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.76 E-value=0.00048 Score=68.94 Aligned_cols=159 Identities=13% Similarity=0.169 Sum_probs=90.9
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch--------
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-------- 287 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~-------- 287 (487)
..+.+.+.++..|..++..- -..-|..|.|||..|||||.+++.+-+..+.+.+.+++-+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~---------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNN---------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHhCCC---------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 35667788888888777311 1123556799999999999999999999999988888765321
Q ss_pred -------hccchh----HHHHHHH---HHH--HH--hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCC
Q 011393 288 -------KWVGEG----EKLVRTL---FMV--AI--SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN 349 (487)
Q Consensus 288 -------~~~g~~----~~~i~~~---f~~--a~--~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 349 (487)
...|.. ..++..+ |.. +. ..+...|++|.+|.|- +...-++..++..-. +...
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--------D~~a~ll~~l~~L~e-l~~~ 147 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--------DMDAILLQCLFRLYE-LLNE 147 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--------ccchHHHHHHHHHHH-HhCC
Confidence 111111 1222222 221 11 1245689999999993 222333444443322 2222
Q ss_pred CCCcEEEEEecCCCCCCCHHHHc---c-cccEEEccCCCHHHHHHHHHHHhc
Q 011393 350 PNDLVIVMGATNKPQELDDAVLR---R-LVKRIYVPLPDENVRRLLLKHKLK 397 (487)
Q Consensus 350 ~~~~vivI~ttn~~~~ld~al~~---R-f~~~i~i~~Pd~~~r~~il~~~l~ 397 (487)
+ .+.++...-.+ ...... - ....++||.|+.++..+|+.+--.
T Consensus 148 ~--~i~iils~~~~---e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 148 P--TIVIILSAPSC---EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred C--ceEEEEecccc---HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 2 23333222111 111111 1 124689999999999998876443
No 309
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.74 E-value=0.00018 Score=72.04 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=50.9
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccchh----------------ccchhHHHHHHHHHHHHhc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLTSK----------------WVGEGEKLVRTLFMVAISR 307 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~~~----------------~~g~~~~~i~~~f~~a~~~ 307 (487)
...+-+.++||||+|||+|+-.++.+ .+..+++++....... .....+..+..+....+..
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~ 132 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSG 132 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhcc
Confidence 34456889999999999999988754 4677777776432111 0011233333333344566
Q ss_pred CCcEEEechhhhhhcc
Q 011393 308 QPCVIFIDEIDSIMST 323 (487)
Q Consensus 308 ~p~Il~IDEiD~l~~~ 323 (487)
.+.+|+||-+-.+.+.
T Consensus 133 ~~~lIVIDSvaal~~~ 148 (325)
T cd00983 133 AVDLIVVDSVAALVPK 148 (325)
T ss_pred CCCEEEEcchHhhccc
Confidence 7899999999999863
No 310
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.72 E-value=0.00018 Score=61.45 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=39.1
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.|.|++-+.+.+...+...+..+ ....|..+-|+||||||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~-----~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP-----NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC-----CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 58999999988888886443322 12223455699999999999999999984
No 311
>PTZ00202 tuzin; Provisional
Probab=97.72 E-value=0.002 Score=66.38 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=49.5
Q ss_pred CCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC
Q 011393 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (487)
Q Consensus 212 ~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~ 283 (487)
|....+++|.+....+|...+.... ...++-+.|.||+|||||+|++.++..++...+.++..
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d---------~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLD---------TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccC---------CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 4557789999999999988874211 11234678999999999999999999998777777765
No 312
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.72 E-value=0.00027 Score=73.37 Aligned_cols=133 Identities=21% Similarity=0.251 Sum_probs=76.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcch
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANEND 330 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~ 330 (487)
.++|+||.+||||++++.+.....-.++.++..++......- ....+.+.. +.......||||||+.+- +
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l-~d~~~~~~~-~~~~~~~yifLDEIq~v~--------~ 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL-LDLLRAYIE-LKEREKSYIFLDEIQNVP--------D 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH-HHHHHHHHH-hhccCCceEEEecccCch--------h
Confidence 799999999999999988888876556666666654433221 112222222 222245799999998771 1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC--CCCCCHHHHcccccEEEccCCCHHHHHH-------------HHHHH
Q 011393 331 ASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK--PQELDDAVLRRLVKRIYVPLPDENVRRL-------------LLKHK 395 (487)
Q Consensus 331 ~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~--~~~ld~al~~Rf~~~i~i~~Pd~~~r~~-------------il~~~ 395 (487)
. .+.+.- ..|.. ...+++.+++.. ...+...+..|.. .+.+.+.+-.+... .+..+
T Consensus 109 W-~~~lk~---l~d~~----~~~v~itgsss~ll~~~~~~~L~GR~~-~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~~Y 179 (398)
T COG1373 109 W-ERALKY---LYDRG----NLDVLITGSSSSLLSKEISESLAGRGK-DLELYPLSFREFLKLKGEEIEPSKLELLFEKY 179 (398)
T ss_pred H-HHHHHH---HHccc----cceEEEECCchhhhccchhhhcCCCce-eEEECCCCHHHHHhhcccccchhHHHHHHHHH
Confidence 1 111222 22211 112455444322 1234556666854 57777777777754 56777
Q ss_pred hccCCCC
Q 011393 396 LKGQAFS 402 (487)
Q Consensus 396 l~~~~~~ 402 (487)
+...|++
T Consensus 180 l~~GGfP 186 (398)
T COG1373 180 LETGGFP 186 (398)
T ss_pred HHhCCCc
Confidence 7665544
No 313
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.70 E-value=0.0005 Score=65.92 Aligned_cols=75 Identities=23% Similarity=0.310 Sum_probs=47.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccchhc-----------------------------c--ch
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLTSKW-----------------------------V--GE 292 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~~~~-----------------------------~--g~ 292 (487)
.+...+++.||||||||+++..++.. -+..+++++..+-.... . ..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSE 101 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHH
Confidence 44567999999999999998665443 25566666643211100 0 00
Q ss_pred hHHHHHHHHHHHHhcCCcEEEechhhhhh
Q 011393 293 GEKLVRTLFMVAISRQPCVIFIDEIDSIM 321 (487)
Q Consensus 293 ~~~~i~~~f~~a~~~~p~Il~IDEiD~l~ 321 (487)
.+..+..+........|.+++|||+-.+.
T Consensus 102 ~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 102 KRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 12334445555555678999999998875
No 314
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=0.00019 Score=73.25 Aligned_cols=110 Identities=22% Similarity=0.323 Sum_probs=60.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc----C-CeEEEEecCccch----------hccc------hhHHHHHHHHHHHHh
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES----Q-ATFFNVSASSLTS----------KWVG------EGEKLVRTLFMVAIS 306 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~----~-~~~~~v~~~~l~~----------~~~g------~~~~~i~~~f~~a~~ 306 (487)
.+..++|.||+|+||||++..+|..+ | ..+..+....+.. ...+ .....+...+ ...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l--~~l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL--AEL 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH--HHh
Confidence 35679999999999999999998763 3 3444454433310 0011 0111122222 223
Q ss_pred cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHH
Q 011393 307 RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAV 370 (487)
Q Consensus 307 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al 370 (487)
....+|+||.+.... ....+.+.+..+.+.. .+...++|+.+|.....+...+
T Consensus 214 ~~~DlVLIDTaG~~~----------~d~~l~e~La~L~~~~-~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 214 RNKHMVLIDTIGMSQ----------RDRTVSDQIAMLHGAD-TPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred cCCCEEEEcCCCCCc----------ccHHHHHHHHHHhccC-CCCeEEEEecCccChHHHHHHH
Confidence 456799999985331 1122334444454332 2234577888887776665443
No 315
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.69 E-value=4.1e-05 Score=69.54 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=30.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
++..|+|+||||||||++|+.+|..++.+++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4568999999999999999999999999888543
No 316
>PRK13949 shikimate kinase; Provisional
Probab=97.67 E-value=0.00031 Score=64.02 Aligned_cols=32 Identities=38% Similarity=0.561 Sum_probs=29.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
+.|+|.||||+|||++++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 46999999999999999999999999888765
No 317
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.65 E-value=0.00012 Score=66.64 Aligned_cols=23 Identities=48% Similarity=0.751 Sum_probs=20.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc
Q 011393 251 GLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~ 273 (487)
+|+|+|+||+||||+++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999998886
No 318
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.64 E-value=0.0013 Score=67.36 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=46.0
Q ss_pred cEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC--CCCCCCHHHHcccccEEEccCCCHHH
Q 011393 310 CVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN--KPQELDDAVLRRLVKRIYVPLPDENV 387 (487)
Q Consensus 310 ~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn--~~~~ld~al~~Rf~~~i~i~~Pd~~~ 387 (487)
.||+||.+..-. ..++.....+.++-..+-. ..--+|+++ |++ ....|..++-.|..+.|.+...+.+.
T Consensus 150 PVVVIdnF~~k~-----~~~~~iy~~laeWAa~Lv~---~nIAHVIFl-T~dv~~~k~LskaLPn~vf~tI~L~Das~~~ 220 (431)
T PF10443_consen 150 PVVVIDNFLHKA-----EENDFIYDKLAEWAASLVQ---NNIAHVIFL-TDDVSYSKPLSKALPNRVFKTISLSDASPES 220 (431)
T ss_pred CEEEEcchhccC-----cccchHHHHHHHHHHHHHh---cCccEEEEE-CCCCchhhhHHHhCCCCceeEEeecCCCHHH
Confidence 499999985431 1123333333333333221 111223333 332 22456777777766788999888888
Q ss_pred HHHHHHHHhccC
Q 011393 388 RRLLLKHKLKGQ 399 (487)
Q Consensus 388 r~~il~~~l~~~ 399 (487)
-+.++..+|...
T Consensus 221 Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 221 AKQYVLSQLDED 232 (431)
T ss_pred HHHHHHHHhccc
Confidence 888888888653
No 319
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.64 E-value=0.00019 Score=75.03 Aligned_cols=164 Identities=24% Similarity=0.360 Sum_probs=92.1
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeE---------EEEecCccc
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATF---------FNVSASSLT 286 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~---------~~v~~~~l~ 286 (487)
.|.|++.+|+++.-++..-... .+-.+. .+..-+|||.|.|.|.||-|.|.+.+-....+ +-+.+.-..
T Consensus 302 SI~GH~~vKkAillLLlGGvEk-~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTt 380 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEK-NLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTT 380 (818)
T ss_pred ccccHHHHHHHHHHHHhcccee-ccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEee
Confidence 4789999999987666432111 011111 13345799999999999999999977643221 111111111
Q ss_pred hhccchhHHHHHH-HHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHH----h--cCCCCCCCCcEEEEEe
Q 011393 287 SKWVGEGEKLVRT-LFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQ----F--DGVTSNPNDLVIVMGA 359 (487)
Q Consensus 287 ~~~~g~~~~~i~~-~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~----l--~~~~~~~~~~vivI~t 359 (487)
.+-- +++.+.. .+-.| ..+|++|||+|.+ .+..+-.+.+.+.+ + .|+...-+-++-|+++
T Consensus 381 D~eT--GERRLEAGAMVLA---DRGVVCIDEFDKM--------sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAA 447 (818)
T KOG0479|consen 381 DQET--GERRLEAGAMVLA---DRGVVCIDEFDKM--------SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAA 447 (818)
T ss_pred cccc--chhhhhcCceEEc---cCceEEehhcccc--------cchhHHHHHHHHhcceEEeEeccchhhhccceeeeee
Confidence 1111 2222221 11111 2369999999998 22334444444433 1 2455445567889999
Q ss_pred cCCCC-------------CCCHHHHcccccE-EEccCCCHHHHHHHHHH
Q 011393 360 TNKPQ-------------ELDDAVLRRLVKR-IYVPLPDENVRRLLLKH 394 (487)
Q Consensus 360 tn~~~-------------~ld~al~~Rf~~~-i~i~~Pd~~~r~~il~~ 394 (487)
+|+.+ .|+..+++||+.. +.+..-|.+.-..|-.+
T Consensus 448 ANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeH 496 (818)
T KOG0479|consen 448 ANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEH 496 (818)
T ss_pred cCccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHH
Confidence 98765 3689999999943 33333444433333333
No 320
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.63 E-value=0.00012 Score=64.26 Aligned_cols=27 Identities=44% Similarity=0.776 Sum_probs=24.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCeEE
Q 011393 252 LLLFGPPGNGKTMLAKAVASESQATFF 278 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~~~~~~ 278 (487)
|++.||||+||||+|+.++..++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 789999999999999999999994443
No 321
>PRK10867 signal recognition particle protein; Provisional
Probab=97.61 E-value=0.0014 Score=68.38 Aligned_cols=205 Identities=18% Similarity=0.200 Sum_probs=99.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEecCccchhc---------------c-----chhHHHHHHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSASSLTSKW---------------V-----GEGEKLVRTLFM 302 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~~~l~~~~---------------~-----g~~~~~i~~~f~ 302 (487)
.++..++|.||+|+||||++..+|..+ |..+..+++....... . ..........+.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 346789999999999999877777643 6667777765332210 0 012233344555
Q ss_pred HHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--HHHHcccc-cEEE
Q 011393 303 VAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELD--DAVLRRLV-KRIY 379 (487)
Q Consensus 303 ~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld--~al~~Rf~-~~i~ 379 (487)
.++.....+|+||=.-.+. .......++....+.. .+...++|+-++...+.++ ..+..++. ..+-
T Consensus 178 ~a~~~~~DvVIIDTaGrl~---------~d~~lm~eL~~i~~~v--~p~evllVlda~~gq~av~~a~~F~~~~~i~giI 246 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRLH---------IDEELMDELKAIKAAV--NPDEILLVVDAMTGQDAVNTAKAFNEALGLTGVI 246 (433)
T ss_pred HHHhcCCCEEEEeCCCCcc---------cCHHHHHHHHHHHHhh--CCCeEEEEEecccHHHHHHHHHHHHhhCCCCEEE
Confidence 5555667799998775431 1122222322222212 2233344444432211111 22222221 2344
Q ss_pred ccCCCHHHHHHHHHHHhccCCC------------CCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhcccc
Q 011393 380 VPLPDENVRRLLLKHKLKGQAF------------SLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKA 447 (487)
Q Consensus 380 i~~Pd~~~r~~il~~~l~~~~~------------~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~ 447 (487)
+.-.|...+.-.+.......++ .+...+.+.++.+.=| .+|+..|++.|...--.+-.... ...
T Consensus 247 lTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilg--mgD~~~l~e~~~~~~~~~~~~~~--~~~ 322 (433)
T PRK10867 247 LTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILG--MGDVLSLIEKAQEVVDEEKAEKL--AKK 322 (433)
T ss_pred EeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhC--CCChHHHHHHHHHhhCHHHHHHH--HHH
Confidence 4455544443322222221111 1233456677777755 47899998877543211100000 000
Q ss_pred ccCCCCcHHHHHHHHHhhC
Q 011393 448 NQLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 448 ~~~~~l~~~df~~al~~~~ 466 (487)
......+.+||.+.++.++
T Consensus 323 ~~~g~f~l~d~~~q~~~~~ 341 (433)
T PRK10867 323 LKKGKFDLEDFLEQLQQMK 341 (433)
T ss_pred HHhCCCCHHHHHHHHHHHH
Confidence 0112478889888776544
No 322
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.60 E-value=0.00027 Score=69.21 Aligned_cols=94 Identities=17% Similarity=0.230 Sum_probs=61.7
Q ss_pred CCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CeEEEEe-cCccch
Q 011393 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVS-ASSLTS 287 (487)
Q Consensus 212 ~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~---~~~~~v~-~~~l~~ 287 (487)
..++++++-.+...+.|++++. .+...++|.||+|+||||+++++..... ..++.+. ..++.-
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~-------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLE-------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh-------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 3567788777777777776663 2234589999999999999999977753 3344432 112111
Q ss_pred h------ccchhHHHHHHHHHHHHhcCCcEEEechhh
Q 011393 288 K------WVGEGEKLVRTLFMVAISRQPCVIFIDEID 318 (487)
Q Consensus 288 ~------~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD 318 (487)
. ...........++..+....|.+|+|+|+.
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 1 011112245667777778899999999994
No 323
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.59 E-value=0.00014 Score=68.16 Aligned_cols=67 Identities=21% Similarity=0.342 Sum_probs=43.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcC----CeEEEEec-Cccch---------hccchhHHHHHHHHHHHHhcCCcEEEech
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQ----ATFFNVSA-SSLTS---------KWVGEGEKLVRTLFMVAISRQPCVIFIDE 316 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~----~~~~~v~~-~~l~~---------~~~g~~~~~i~~~f~~a~~~~p~Il~IDE 316 (487)
-+++.||+|+||||++++++.... ..++.+.. .++.. ..++.....+...+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 478999999999999999988764 22232221 11110 01122223455566667777899999999
Q ss_pred h
Q 011393 317 I 317 (487)
Q Consensus 317 i 317 (487)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 324
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.00038 Score=69.67 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCC-C-CCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 011393 47 AYKLKGYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTP-V-PSYISTSEHEKVKSYRQKISKWQSQVSDR 124 (487)
Q Consensus 47 ~~~~k~~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~-~-~~~~~~~~~~k~~~y~~rae~~k~~v~~r 124 (487)
-+-++.-|+.|+-.+++++-.||-++.++|+..|.+||.++++++.+- + ....+...|+-+..+++++.+-+..+..|
T Consensus 12 ~a~Ir~ayk~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAcaliQklkes~~~vr~R 91 (560)
T KOG2709|consen 12 TAQIRAAYKGAYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDACALIQKLKESKSSVRHR 91 (560)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999999999999999999999999999988643 2 34578899999999999999999999999
Q ss_pred HHHHhhhh
Q 011393 125 LQALNRRA 132 (487)
Q Consensus 125 l~~L~~~~ 132 (487)
++.|++..
T Consensus 92 l~vL~kqk 99 (560)
T KOG2709|consen 92 LNVLKKQK 99 (560)
T ss_pred HHHHHhhh
Confidence 99999853
No 325
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.57 E-value=0.00073 Score=64.88 Aligned_cols=76 Identities=17% Similarity=0.280 Sum_probs=49.4
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccchhcc--------------------------------
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLTSKWV-------------------------------- 290 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~~~~~-------------------------------- 290 (487)
...+..++++||||+|||+++..++.+ .+.++++++..+-...+.
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 101 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWN 101 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccC
Confidence 345677999999999999999999765 366777766543211100
Q ss_pred -chhHHHHHHHHHHHHhcCCcEEEechhhhhh
Q 011393 291 -GEGEKLVRTLFMVAISRQPCVIFIDEIDSIM 321 (487)
Q Consensus 291 -g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~ 321 (487)
......+..+........|.+|+||++..+.
T Consensus 102 ~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 102 STLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0012333334444445588999999998764
No 326
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.57 E-value=0.00037 Score=59.72 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
++++++||+|+|||+++-.++.+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999988887764
No 327
>PRK14974 cell division protein FtsY; Provisional
Probab=97.56 E-value=0.0013 Score=66.51 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=27.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~ 283 (487)
.+..++|.||||+||||++..+|..+ +..+..+++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 35679999999999999888888764 4555555544
No 328
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.56 E-value=0.00037 Score=80.10 Aligned_cols=139 Identities=19% Similarity=0.256 Sum_probs=87.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccc------hhccchhHH---HHHHHHHHHHhcCCcEEEechhhh
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT------SKWVGEGEK---LVRTLFMVAISRQPCVIFIDEIDS 319 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~------~~~~g~~~~---~i~~~f~~a~~~~p~Il~IDEiD~ 319 (487)
.-++||.||..+|||+++..+|.+.|..|+.++-.+-+ +.|+..... .-..++-.|.+ ++..|++||+..
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR-~GyWIVLDELNL 966 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR-RGYWIVLDELNL 966 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh-cCcEEEeecccc
Confidence 35699999999999999999999999999999876532 223322111 11122333322 346899999964
Q ss_pred hhccCCCCcchHHHHHHHHHHHHhcCC-------CCCCCCcEEEEEecCCCC------CCCHHHHcccccEEEccCCCHH
Q 011393 320 IMSTRMANENDASRRLKSEFLIQFDGV-------TSNPNDLVIVMGATNKPQ------ELDDAVLRRLVKRIYVPLPDEN 386 (487)
Q Consensus 320 l~~~~~~~~~~~~~~~~~~ll~~l~~~-------~~~~~~~vivI~ttn~~~------~ld~al~~Rf~~~i~i~~Pd~~ 386 (487)
- ++ ...++++.||..-..+ .-.|...+.+++|-|+|. .|..|++.||.. ++|..-..+
T Consensus 967 A-pT-------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE-~hFddiped 1037 (4600)
T COG5271 967 A-PT-------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLE-MHFDDIPED 1037 (4600)
T ss_pred C-cH-------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHh-hhcccCcHH
Confidence 3 21 1223333333211111 113345578888888875 468999999984 677666677
Q ss_pred HHHHHHHHHhc
Q 011393 387 VRRLLLKHKLK 397 (487)
Q Consensus 387 ~r~~il~~~l~ 397 (487)
+...|++..++
T Consensus 1038 Ele~ILh~rc~ 1048 (4600)
T COG5271 1038 ELEEILHGRCE 1048 (4600)
T ss_pred HHHHHHhccCc
Confidence 77777765543
No 329
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.55 E-value=0.0016 Score=65.58 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=25.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCe
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQAT 276 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~ 276 (487)
.++..|.|+|+=|+|||++.+.+-+++...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 456789999999999999999998876433
No 330
>PHA02774 E1; Provisional
Probab=97.54 E-value=0.00091 Score=71.10 Aligned_cols=34 Identities=24% Similarity=0.554 Sum_probs=28.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEE-Eec
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFN-VSA 282 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~-v~~ 282 (487)
..+++||||||||||++|-+|++.++..++. ++.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 3689999999999999999999998655543 553
No 331
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.54 E-value=0.00056 Score=64.87 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=29.4
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~ 283 (487)
.++.-++++|+||+|||+++..+|.+. +.++++++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 445668999999999999999998764 5677777654
No 332
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.54 E-value=0.00045 Score=66.17 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=30.3
Q ss_pred cCCCCceeEEeCCCCCcHHHHHHHHHHHc---------CCeEEEEecCc
Q 011393 245 LRRPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSASS 284 (487)
Q Consensus 245 ~~~~~~~iLL~GppGtGKT~la~aiA~~~---------~~~~~~v~~~~ 284 (487)
...+..-+.|+||||+|||+++..++... +..+++++..+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 33556678999999999999999997542 25677777654
No 333
>PRK13695 putative NTPase; Provisional
Probab=97.54 E-value=0.00078 Score=61.56 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc
Q 011393 251 GLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++|.|++|+|||+|++.++.++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999987764
No 334
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.53 E-value=0.00093 Score=60.93 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=54.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhcc-c----------------hhHHHHHHHHHHHHhcCCcEEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWV-G----------------EGEKLVRTLFMVAISRQPCVIF 313 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~-g----------------~~~~~i~~~f~~a~~~~p~Il~ 313 (487)
.+|+.||||+|||++|..++...+.+++++........-. . +....+..++... ...+.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 5899999999999999999999887777666543321100 0 0011223333221 23466899
Q ss_pred echhhhhhccCCCCcc-hHHHHHHHHHHHHhcC
Q 011393 314 IDEIDSIMSTRMANEN-DASRRLKSEFLIQFDG 345 (487)
Q Consensus 314 IDEiD~l~~~~~~~~~-~~~~~~~~~ll~~l~~ 345 (487)
||-+..+....-..+. ......+..++..+..
T Consensus 82 ID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 82 VDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred ehhHHHHHHHHhcccchHHHHHHHHHHHHHHHc
Confidence 9999998654321111 1223334455555543
No 335
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.00027 Score=66.08 Aligned_cols=73 Identities=25% Similarity=0.292 Sum_probs=49.0
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc--------CCeEEEEecC-ccchhccc-------------hhHHHHHHHHHHHH
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES--------QATFFNVSAS-SLTSKWVG-------------EGEKLVRTLFMVAI 305 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~--------~~~~~~v~~~-~l~~~~~g-------------~~~~~i~~~f~~a~ 305 (487)
.+.+.|+.||||||||||.|-+|+-+ ...+..++-. ++.+...| ...-.-..++...+
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr 215 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR 215 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH
Confidence 45679999999999999999999864 2334444432 22222111 12233345667778
Q ss_pred hcCCcEEEechhhhh
Q 011393 306 SRQPCVIFIDEIDSI 320 (487)
Q Consensus 306 ~~~p~Il~IDEiD~l 320 (487)
.+.|-||++|||-..
T Consensus 216 sm~PEViIvDEIGt~ 230 (308)
T COG3854 216 SMSPEVIIVDEIGTE 230 (308)
T ss_pred hcCCcEEEEeccccH
Confidence 899999999999654
No 336
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.51 E-value=0.0012 Score=63.61 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=29.3
Q ss_pred ccCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecC
Q 011393 244 GLRRPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSAS 283 (487)
Q Consensus 244 ~~~~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~ 283 (487)
+.-.++..+|++||||+|||+++..++.+ .|-+.++++..
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 33456778999999999999999877554 35566665543
No 337
>PRK10536 hypothetical protein; Provisional
Probab=97.51 E-value=0.0014 Score=63.23 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=31.7
Q ss_pred CcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHH
Q 011393 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 214 ~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
.+.-|.+.......+..++. . ..-+++.||+|||||+||.+++.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~-------------~-~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIE-------------S-KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHh-------------c-CCeEEEECCCCCCHHHHHHHHHHH
Confidence 34445565555555555442 1 236899999999999999999885
No 338
>PRK13947 shikimate kinase; Provisional
Probab=97.50 E-value=0.0001 Score=66.97 Aligned_cols=32 Identities=31% Similarity=0.515 Sum_probs=29.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
.+|+|.|+||||||++++.+|+.++.+|+..+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 36999999999999999999999999997655
No 339
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.002 Score=65.83 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC
Q 011393 221 LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (487)
Q Consensus 221 ~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~ 283 (487)
.+.+++.+.+.+...+..+..+ ...++.|+|.||+|+||||++..+|..+ +..+..+++.
T Consensus 216 ~~~~~~~l~~~l~~~l~~~~~~---~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 216 EEEVIEYILEDMRSHFNTENVF---EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred HHHHHHHHHHHHHHHhcccccc---ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 3556666666554332222111 1234679999999999999999998865 4455555553
No 340
>PRK03839 putative kinase; Provisional
Probab=97.46 E-value=0.00011 Score=67.62 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=28.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
.|+|.|+||+||||+++.+|+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999887654
No 341
>PRK00625 shikimate kinase; Provisional
Probab=97.46 E-value=0.00012 Score=66.90 Aligned_cols=31 Identities=35% Similarity=0.524 Sum_probs=28.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
.|+|.|+||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 342
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.45 E-value=0.00035 Score=71.08 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=44.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC-----CeEEEEecCc----------------cchhccchhHHHHH---HHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQ-----ATFFNVSASS----------------LTSKWVGEGEKLVR---TLFMVA 304 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~-----~~~~~v~~~~----------------l~~~~~g~~~~~i~---~~f~~a 304 (487)
+...+|+||||+|||+|++.|++... ..++.+-..+ +.+.+.......++ .+++.|
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 34588899999999999999998753 3322221211 11112222222222 333333
Q ss_pred H----hcCCcEEEechhhhhhcc
Q 011393 305 I----SRQPCVIFIDEIDSIMST 323 (487)
Q Consensus 305 ~----~~~p~Il~IDEiD~l~~~ 323 (487)
. .+...+|||||++.+...
T Consensus 249 e~~~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHH
Confidence 2 246679999999999654
No 343
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.45 E-value=0.0056 Score=65.04 Aligned_cols=110 Identities=15% Similarity=0.236 Sum_probs=79.9
Q ss_pred CCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHH
Q 011393 308 QPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENV 387 (487)
Q Consensus 308 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~ 387 (487)
.|.|+++.|+|.++.. ....+.+..+...+.. .+. .+|+.+. ...+++.|.+-+ ..+.+|+|+.++
T Consensus 81 ~~~~~vl~d~h~~~~~------~~~~r~l~~l~~~~~~----~~~-~~i~~~~--~~~~p~el~~~~-~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLND------ISISRKLRNLSRILKT----QPK-TIIIIAS--ELNIPKELKDLI-TVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcc------hHHHHHHHHHHHHHHh----CCC-EEEEEcC--CCCCCHHHHhce-eEEeecCcCHHH
Confidence 3789999999999732 1222333333333332 122 3444443 256777776644 478999999999
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 011393 388 RRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAA 431 (487)
Q Consensus 388 r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~ 431 (487)
...+++.+....+..+++.+++.|++.+.|++..+++.++..+.
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~ 190 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKII 190 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999998887788889999999999999999999999988753
No 344
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.44 E-value=0.00069 Score=64.50 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=30.0
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHc---C------CeEEEEecCc
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASES---Q------ATFFNVSASS 284 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~~---~------~~~~~v~~~~ 284 (487)
..+..-+.|+||||+|||+++..+|... + ..+++++...
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 3455678999999999999999997653 3 5667777654
No 345
>PRK06762 hypothetical protein; Provisional
Probab=97.44 E-value=0.00033 Score=63.41 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=29.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccc
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~ 286 (487)
.-|+|+|+||+||||+|+.++..++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4688999999999999999999986566666654443
No 346
>PRK09354 recA recombinase A; Provisional
Probab=97.43 E-value=0.00088 Score=67.68 Aligned_cols=76 Identities=21% Similarity=0.266 Sum_probs=49.9
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccchh------------c----cchhHHHHHHHHHHHHhc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLTSK------------W----VGEGEKLVRTLFMVAISR 307 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~~~------------~----~g~~~~~i~~~f~~a~~~ 307 (487)
...+-++|+||||||||+|+-.++.+ .+..+++++...-... + ....+..+..+-...+..
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~ 137 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSG 137 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcC
Confidence 33456889999999999999988654 4677777776542111 0 011233333333344556
Q ss_pred CCcEEEechhhhhhc
Q 011393 308 QPCVIFIDEIDSIMS 322 (487)
Q Consensus 308 ~p~Il~IDEiD~l~~ 322 (487)
.+.+|+||-+-.|.+
T Consensus 138 ~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 138 AVDLIVVDSVAALVP 152 (349)
T ss_pred CCCEEEEeChhhhcc
Confidence 789999999999875
No 347
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.42 E-value=0.00014 Score=64.75 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=28.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
+|+|+|+||+|||++|+.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999887654
No 348
>PRK05973 replicative DNA helicase; Provisional
Probab=97.42 E-value=0.0035 Score=60.16 Aligned_cols=38 Identities=32% Similarity=0.371 Sum_probs=29.2
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~ 283 (487)
-.++.-++|.|+||+|||+++-.++.+. |.++++++..
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 3556779999999999999999886643 6666666654
No 349
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.41 E-value=0.00052 Score=66.26 Aligned_cols=73 Identities=27% Similarity=0.393 Sum_probs=50.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHH------HcCCeEEEEecCccchhcc-chhHHHHHHHHHHH--------HhcCCcEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVAS------ESQATFFNVSASSLTSKWV-GEGEKLVRTLFMVA--------ISRQPCVIF 313 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~------~~~~~~~~v~~~~l~~~~~-g~~~~~i~~~f~~a--------~~~~p~Il~ 313 (487)
..++||.||.|.||++||+.|.. ++..+|++++|..+.++.. ...-..++..|.-| +.....+||
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 34699999999999999999853 4688999999998865421 01111233333322 223457999
Q ss_pred echhhhhh
Q 011393 314 IDEIDSIM 321 (487)
Q Consensus 314 IDEiD~l~ 321 (487)
+|||..|.
T Consensus 288 ldeigelg 295 (531)
T COG4650 288 LDEIGELG 295 (531)
T ss_pred hHhhhhcC
Confidence 99998874
No 350
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.0011 Score=60.89 Aligned_cols=28 Identities=39% Similarity=0.736 Sum_probs=24.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFF 278 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~ 278 (487)
.|+|.||||+||||+|+.||+.++.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4899999999999999999999555443
No 351
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00013 Score=63.58 Aligned_cols=33 Identities=30% Similarity=0.622 Sum_probs=29.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
..+||++|-||||||+++..+|..++.+++.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 357999999999999999999999998887654
No 352
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.40 E-value=0.0018 Score=61.67 Aligned_cols=96 Identities=20% Similarity=0.297 Sum_probs=58.0
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHH---c-CCeEEEEecCccchh--------------c------------------
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASE---S-QATFFNVSASSLTSK--------------W------------------ 289 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~---~-~~~~~~v~~~~l~~~--------------~------------------ 289 (487)
-.++..+|+.||||+|||+++..++.. . |-++++++..+-... +
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~ 95 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGW 95 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccc
Confidence 355678999999999999999987643 2 777777776432110 0
Q ss_pred -cchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc
Q 011393 290 -VGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFD 344 (487)
Q Consensus 290 -~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~ 344 (487)
.......+..+........+.+++||-+..|.... .....+..+..+...+.
T Consensus 96 ~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~---~~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 96 SPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYD---DPEELRRFLRALIKFLK 148 (226)
T ss_dssp TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSS---SGGGHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcC---CHHHHHHHHHHHHHHHH
Confidence 01123344455555566778999999999992221 12223445555665553
No 353
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.38 E-value=0.0058 Score=63.53 Aligned_cols=205 Identities=12% Similarity=0.148 Sum_probs=97.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh---------------ccc-----hhHHHHHHHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK---------------WVG-----EGEKLVRTLFMV 303 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~---------------~~g-----~~~~~i~~~f~~ 303 (487)
.++..|+|.||+|+||||++..+|..+ |..+..+++...... +.. .........+..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 345679999999999999999998765 666666666432210 010 011222334445
Q ss_pred HHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--HHHHcccc-cEEEc
Q 011393 304 AISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELD--DAVLRRLV-KRIYV 380 (487)
Q Consensus 304 a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld--~al~~Rf~-~~i~i 380 (487)
++.....+||||=.-.+ ........++....+.. .+...++|+-++.....++ .++...+. ..+-+
T Consensus 178 ~~~~~~DvViIDTaGr~---------~~d~~lm~El~~i~~~~--~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~Il 246 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRH---------KQEDSLFEEMLQVAEAI--QPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVII 246 (429)
T ss_pred HHhCCCCEEEEECCCCC---------cchHHHHHHHHHHhhhc--CCcEEEEEeccccChhHHHHHHHHHhccCCcEEEE
Confidence 55455678998876432 11223334433333222 2233344554443222211 22222211 22444
Q ss_pred cCCCHHHHHH-HHH-HHhccCCC-------C---CChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhccccc
Q 011393 381 PLPDENVRRL-LLK-HKLKGQAF-------S---LPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKAN 448 (487)
Q Consensus 381 ~~Pd~~~r~~-il~-~~l~~~~~-------~---l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~ 448 (487)
.-.|...|.- ++. .+..+.++ . +...+-+.++.+.-|. +|+..|++.|...--.+-..... ...
T Consensus 247 TKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilgm--gDi~~L~ek~~~~~~~~~~~~~~--~k~ 322 (429)
T TIGR01425 247 TKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLGM--GDIEGLIDKVQDLKLDDNEKALI--EKL 322 (429)
T ss_pred ECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhcC--CCcHHHHHHHHHhhhHHHHHHHH--HHH
Confidence 4455555541 111 11111111 1 1223455666666553 68888888765432111000000 001
Q ss_pred cCCCCcHHHHHHHHHhhC
Q 011393 449 QLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 449 ~~~~l~~~df~~al~~~~ 466 (487)
.....+.+||.+.++.++
T Consensus 323 ~~~~f~l~D~~~q~~~i~ 340 (429)
T TIGR01425 323 KEGTFTLRDMYEQFQNLL 340 (429)
T ss_pred HhCCCCHHHHHHHHHHHH
Confidence 113478889987776543
No 354
>PRK14532 adenylate kinase; Provisional
Probab=97.37 E-value=0.00017 Score=66.68 Aligned_cols=35 Identities=34% Similarity=0.571 Sum_probs=28.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~ 287 (487)
.|+|.||||+||||+++.+|+..++.++ +..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHH
Confidence 5899999999999999999999987665 4444443
No 355
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.36 E-value=0.0004 Score=70.70 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=45.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC----CeEEEEec-Cccc---------hhccchhHHHHHHHHHHHHhcCCcEEEe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQ----ATFFNVSA-SSLT---------SKWVGEGEKLVRTLFMVAISRQPCVIFI 314 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~----~~~~~v~~-~~l~---------~~~~g~~~~~i~~~f~~a~~~~p~Il~I 314 (487)
...++++||+|+||||+++++..... ..++.+.- .++. ...++.........+..+....|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 45689999999999999999988653 23333221 1111 1112222234556667777889999999
Q ss_pred chh
Q 011393 315 DEI 317 (487)
Q Consensus 315 DEi 317 (487)
||+
T Consensus 202 gEi 204 (343)
T TIGR01420 202 GEM 204 (343)
T ss_pred eCC
Confidence 999
No 356
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.35 E-value=0.0007 Score=65.55 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=23.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQA 275 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~ 275 (487)
+..++|.||+|+|||+|++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 467999999999999999999988654
No 357
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.35 E-value=0.00019 Score=66.06 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=27.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch
Q 011393 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~ 287 (487)
|+|+||||+||||+|+.+|..++..+ ++..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHH
Confidence 78999999999999999999998655 45555543
No 358
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.34 E-value=0.0022 Score=58.39 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=46.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhc-----------------cchhHHHHHHHHHHHHhcCCcEEEe
Q 011393 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW-----------------VGEGEKLVRTLFMVAISRQPCVIFI 314 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~-----------------~g~~~~~i~~~f~~a~~~~p~Il~I 314 (487)
+|+.|++|+|||++|..++...+.+++++....-.+.- ..+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 68999999999999999998877777777654322110 011122333333211 24679999
Q ss_pred chhhhhhccC
Q 011393 315 DEIDSIMSTR 324 (487)
Q Consensus 315 DEiD~l~~~~ 324 (487)
|-+..+...-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999887654
No 359
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.34 E-value=0.00059 Score=68.97 Aligned_cols=71 Identities=21% Similarity=0.339 Sum_probs=47.8
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC--eEEEEe-cCccch------------h-ccchhHHHHHHHHHHHHhcCCcE
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQA--TFFNVS-ASSLTS------------K-WVGEGEKLVRTLFMVAISRQPCV 311 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~--~~~~v~-~~~l~~------------~-~~g~~~~~i~~~f~~a~~~~p~I 311 (487)
...+|+++||+|+||||+++++...... .++.+. ..++.- . ..+...-....++..+.+..|.+
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 3468999999999999999999988642 233221 111110 0 01122234567888888999999
Q ss_pred EEechhh
Q 011393 312 IFIDEID 318 (487)
Q Consensus 312 l~IDEiD 318 (487)
|++.|+-
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999994
No 360
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.33 E-value=0.00023 Score=69.87 Aligned_cols=98 Identities=24% Similarity=0.336 Sum_probs=59.4
Q ss_pred CCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CeEEEEec-Cccc
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSA-SSLT 286 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~---~~~~~v~~-~~l~ 286 (487)
...++++++-.....+.+.+++.... +....+++.||+|+|||++++++..+.. ..++.+.- .++.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 34577777666655556655554221 2246899999999999999999998863 33443332 1111
Q ss_pred hh------ccc-hhHHHHHHHHHHHHhcCCcEEEechhh
Q 011393 287 SK------WVG-EGEKLVRTLFMVAISRQPCVIFIDEID 318 (487)
Q Consensus 287 ~~------~~g-~~~~~i~~~f~~a~~~~p~Il~IDEiD 318 (487)
-. +.. ........++..+.+..|.+|+|+|+-
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 11 111 233456677777888899999999994
No 361
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.32 E-value=0.0086 Score=58.88 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=28.8
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~ 283 (487)
.+++.++|.||+|+|||+++..+|..+ +..+.-+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 445778899999999999999998764 5566666654
No 362
>PRK04040 adenylate kinase; Provisional
Probab=97.32 E-value=0.005 Score=57.08 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=25.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc--CCeEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES--QATFF 278 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~--~~~~~ 278 (487)
+.-|+++|+|||||||+++.++..+ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 4568999999999999999999998 55553
No 363
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.32 E-value=0.002 Score=67.90 Aligned_cols=78 Identities=26% Similarity=0.297 Sum_probs=53.1
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhc------cch--------hHHHHHHHHHHHHhcC
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKW------VGE--------GEKLVRTLFMVAISRQ 308 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~------~g~--------~~~~i~~~f~~a~~~~ 308 (487)
..+..-++|+|+||+|||+|+..++... +.++++++..+..... .+. .+..+..+........
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~ 170 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEEN 170 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcC
Confidence 3455678999999999999999997754 4567777765432211 010 1123445555566678
Q ss_pred CcEEEechhhhhhcc
Q 011393 309 PCVIFIDEIDSIMST 323 (487)
Q Consensus 309 p~Il~IDEiD~l~~~ 323 (487)
|.+|+||.+..+...
T Consensus 171 ~~~vVIDSIq~l~~~ 185 (454)
T TIGR00416 171 PQACVIDSIQTLYSP 185 (454)
T ss_pred CcEEEEecchhhccc
Confidence 999999999998643
No 364
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.31 E-value=0.0021 Score=63.53 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=28.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc----C-CeEEEEecCc
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES----Q-ATFFNVSASS 284 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~----~-~~~~~v~~~~ 284 (487)
.+..++|.||+|+||||++..+|..+ + ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 35678999999999999999998764 3 5666666554
No 365
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.31 E-value=0.00023 Score=63.23 Aligned_cols=28 Identities=32% Similarity=0.640 Sum_probs=25.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 252 LLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
++|+|+||+||||+|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 366
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.30 E-value=0.0015 Score=61.25 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..++|.||.|+|||++.+.++..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 57899999999999999999853
No 367
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.30 E-value=0.0017 Score=63.70 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=28.9
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEecC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSAS 283 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~~ 283 (487)
.+..-++|.||||+|||+++..+|... +.+++.++..
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 455678999999999999999887653 6677766653
No 368
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.30 E-value=0.013 Score=61.11 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=46.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEecCccchh-------c--------c--c--h-hHHHHHHHHHH
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSASSLTSK-------W--------V--G--E-GEKLVRTLFMV 303 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~~~l~~~-------~--------~--g--~-~~~~i~~~f~~ 303 (487)
++..+++.||+|+||||++..+|..+ |..+..+++...... | . + . ........+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 45689999999999999988887653 566777776543221 0 0 0 0 12233445555
Q ss_pred HHhcCCcEEEechhhhh
Q 011393 304 AISRQPCVIFIDEIDSI 320 (487)
Q Consensus 304 a~~~~p~Il~IDEiD~l 320 (487)
+......+|+||=.-.+
T Consensus 178 ~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 55556678998876443
No 369
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.29 E-value=0.0011 Score=61.17 Aligned_cols=24 Identities=46% Similarity=0.670 Sum_probs=21.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
-|+|+|+||+|||++|+-+|+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 488999999999999999999873
No 370
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.0039 Score=64.39 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=27.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEecCc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSASS 284 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~~~ 284 (487)
+..++|.||+|+||||++..+|... |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 4568899999999999999998753 44555555443
No 371
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.29 E-value=0.00021 Score=65.42 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=29.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~ 283 (487)
++-|+|.|+||+||||+|+.++..++..++.++..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 35689999999999999999999988877765543
No 372
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.29 E-value=0.02 Score=57.35 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=67.5
Q ss_pred CCcEEEechhhhhhccCC--CCc----chHHHHHHHHHHHHhcCCCCCCCCcEE-EEEecC---CCC--CCCHHHHcccc
Q 011393 308 QPCVIFIDEIDSIMSTRM--ANE----NDASRRLKSEFLIQFDGVTSNPNDLVI-VMGATN---KPQ--ELDDAVLRRLV 375 (487)
Q Consensus 308 ~p~Il~IDEiD~l~~~~~--~~~----~~~~~~~~~~ll~~l~~~~~~~~~~vi-vI~ttn---~~~--~ld~al~~Rf~ 375 (487)
-|.++-||++..|+.... +.. ....-.+...|+..+.+-..-.++.++ .+++|. .+. .++.++..+-.
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 467888999999987621 111 112334455666655544443344343 244442 222 44555544322
Q ss_pred ---------------------cEEEccCCCHHHHHHHHHHHhccCCCC---CChhhHHHHHHHcCCCCHHHHHH
Q 011393 376 ---------------------KRIYVPLPDENVRRLLLKHKLKGQAFS---LPGGDLERLVRETEGYSGSDLQA 425 (487)
Q Consensus 376 ---------------------~~i~i~~Pd~~~r~~il~~~l~~~~~~---l~~~~l~~La~~t~G~s~~dL~~ 425 (487)
..+.++..+.+|-..+++.+....-+. .++...+.+...+.| ++++|..
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~G-Np~el~k 308 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNG-NPRELEK 308 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCC-CHHHhcc
Confidence 268899999999999999887764433 233445555555554 7887753
No 373
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.0024 Score=64.94 Aligned_cols=87 Identities=18% Similarity=0.121 Sum_probs=52.3
Q ss_pred CCChHHHHHhhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHH
Q 011393 193 GYDSKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
+++......+-..+....+...+ .+.+.+...+.+.+...+..+..+. ..++..++|.||+|+||||++..+|..
T Consensus 155 gV~~~~~~~l~~~~~~~~~~~~~---~~~~~v~~~~~~~L~~~l~~~~~~~--~~~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 155 GISDTYVADFMQAGRKQFKQVET---AHLDDITDWFVPYLSGKLAVEDSFD--LSNHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCCHHHHHHHHHHHHHhcccccc---ccHHHHHHHHHHHhcCcEeeCCCce--ecCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44444444443444333333222 2356777777777765444433332 244677999999999999999999876
Q ss_pred c---CCeEEEEecCc
Q 011393 273 S---QATFFNVSASS 284 (487)
Q Consensus 273 ~---~~~~~~v~~~~ 284 (487)
+ +..+..+++..
T Consensus 230 l~~~g~~V~lItaDt 244 (407)
T PRK12726 230 LLKQNRTVGFITTDT 244 (407)
T ss_pred HHHcCCeEEEEeCCc
Confidence 4 55555555543
No 374
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.28 E-value=0.0017 Score=65.46 Aligned_cols=28 Identities=39% Similarity=0.642 Sum_probs=24.1
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
..+|+|++|||.-|||||+|.-.+-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 4568999999999999999998887553
No 375
>PRK06217 hypothetical protein; Validated
Probab=97.27 E-value=0.00029 Score=65.02 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=28.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
.|+|.|+||+||||+++.++..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5999999999999999999999999887655
No 376
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.26 E-value=0.0005 Score=68.52 Aligned_cols=70 Identities=21% Similarity=0.359 Sum_probs=47.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEEEecC-ccc-------hhccchhHHHHHHHHHHHHhcCCcEEEec
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSAS-SLT-------SKWVGEGEKLVRTLFMVAISRQPCVIFID 315 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~v~~~-~l~-------~~~~g~~~~~i~~~f~~a~~~~p~Il~ID 315 (487)
..++++.||+|+|||+++++++... +..++.+.-. ++. .-........+..++..+.+..|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 4689999999999999999999875 2333332211 111 00011111256678888888999999999
Q ss_pred hhh
Q 011393 316 EID 318 (487)
Q Consensus 316 EiD 318 (487)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 993
No 377
>PRK13948 shikimate kinase; Provisional
Probab=97.26 E-value=0.00034 Score=64.52 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=31.8
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
.++..|+|.|++|+|||++++.+|+.++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45688999999999999999999999999998655
No 378
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00025 Score=64.11 Aligned_cols=32 Identities=25% Similarity=0.486 Sum_probs=29.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
.+|+|.|++|+||||+.+++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57999999999999999999999999998766
No 379
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.25 E-value=0.028 Score=55.08 Aligned_cols=90 Identities=17% Similarity=0.220 Sum_probs=57.0
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccchhHH
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEK 295 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g~~~~ 295 (487)
-+++-.+++.+.+.+... -+..|..++||.|.+|+||+++++..|.-.+..++.+....-. ...+...
T Consensus 8 m~lVlf~~ai~hi~ri~R----------vL~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y--~~~~f~~ 75 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISR----------VLSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGY--SIKDFKE 75 (268)
T ss_dssp ------HHHHHHHHHHHH----------HHCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTT--HHHHHHH
T ss_pred cceeeHHHHHHHHHHHHH----------HHcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCc--CHHHHHH
Confidence 356666777777666553 1345667899999999999999999999999999988764321 1233345
Q ss_pred HHHHHHHHHH-hcCCcEEEechh
Q 011393 296 LVRTLFMVAI-SRQPCVIFIDEI 317 (487)
Q Consensus 296 ~i~~~f~~a~-~~~p~Il~IDEi 317 (487)
.++.++..|. .+.|.+++|+|-
T Consensus 76 dLk~~~~~ag~~~~~~vfll~d~ 98 (268)
T PF12780_consen 76 DLKKALQKAGIKGKPTVFLLTDS 98 (268)
T ss_dssp HHHHHHHHHHCS-S-EEEEEECC
T ss_pred HHHHHHHHHhccCCCeEEEecCc
Confidence 6666666554 456777777654
No 380
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.24 E-value=0.0025 Score=66.61 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=27.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEEEecCc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSASS 284 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~v~~~~ 284 (487)
+..++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4578999999999999988887653 35666666654
No 381
>PRK14531 adenylate kinase; Provisional
Probab=97.24 E-value=0.00031 Score=64.82 Aligned_cols=30 Identities=30% Similarity=0.579 Sum_probs=26.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
..|+++||||+||||+++.+|...|.+++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 359999999999999999999999877654
No 382
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.24 E-value=0.00059 Score=69.87 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=45.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC-----CeEEEEecC-ccc-----------hhccchhHHHHHHHHHHHHhcCCcEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQ-----ATFFNVSAS-SLT-----------SKWVGEGEKLVRTLFMVAISRQPCVI 312 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~-----~~~~~v~~~-~l~-----------~~~~g~~~~~i~~~f~~a~~~~p~Il 312 (487)
..+|++||+|+||||+++++..+.. ..++.+.-. ++. ...+|.........+..+.+..|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 4589999999999999999988752 344443321 111 11112222245566677778899999
Q ss_pred Eechhh
Q 011393 313 FIDEID 318 (487)
Q Consensus 313 ~IDEiD 318 (487)
++.|+-
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999994
No 383
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.23 E-value=0.0003 Score=65.23 Aligned_cols=29 Identities=34% Similarity=0.631 Sum_probs=25.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 252 LLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
|+|+||||+|||++++.+|..++..++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998776543
No 384
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.23 E-value=0.0011 Score=75.70 Aligned_cols=143 Identities=20% Similarity=0.236 Sum_probs=81.7
Q ss_pred CCCCceeEEeCCCCCcHHHH-HHHHHHHcCCeEEEEecCccchhccchhHHHHHHHHHHHHhc---------------CC
Q 011393 246 RRPARGLLLFGPPGNGKTML-AKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISR---------------QP 309 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~l-a~aiA~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~---------------~p 309 (487)
....++++++||||+|||+| .-++-++.-..++.++.+.... ++..+ .+++..... +.
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~l-s~Ler~t~yy~~tg~~~l~PK~~vK~ 1564 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKL-SVLERETEYYPNTGVVRLYPKPVVKD 1564 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHH-HHHHhhceeeccCCeEEEccCcchhh
Confidence 45568999999999999996 4567777778888887665432 11122 222222111 11
Q ss_pred cEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCC------CCcEEEEEecCCCCCCC-----HHHHcccccEE
Q 011393 310 CVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNP------NDLVIVMGATNKPQELD-----DAVLRRLVKRI 378 (487)
Q Consensus 310 ~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~vivI~ttn~~~~ld-----~al~~Rf~~~i 378 (487)
-|||.|||. |-..+.=..... --.+..++ +-+|.-... -.++++.|++|++.+.. ..+.||- ..+
T Consensus 1565 lVLFcDeIn-Lp~~~~y~~~~v-I~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~v 1640 (3164)
T COG5245 1565 LVLFCDEIN-LPYGFEYYPPTV-IVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-VFV 1640 (3164)
T ss_pred eEEEeeccC-CccccccCCCce-EEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-eEE
Confidence 489999998 422111000000 00000111 111221111 13588999999987653 4444443 468
Q ss_pred EccCCCHHHHHHHHHHHhcc
Q 011393 379 YVPLPDENVRRLLLKHKLKG 398 (487)
Q Consensus 379 ~i~~Pd~~~r~~il~~~l~~ 398 (487)
++..|.......|.+.++.+
T Consensus 1641 f~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1641 FCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EecCcchhhHHHHHHHHHHH
Confidence 88899998888888877764
No 385
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.22 E-value=0.00031 Score=61.84 Aligned_cols=30 Identities=27% Similarity=0.554 Sum_probs=27.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 252 LLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
|++.|+||+|||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999988776
No 386
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.22 E-value=0.00031 Score=63.36 Aligned_cols=28 Identities=36% Similarity=0.633 Sum_probs=24.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 252 LLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
|+|.||+|+||||+|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999876653
No 387
>PRK04132 replication factor C small subunit; Provisional
Probab=97.21 E-value=0.00017 Score=80.45 Aligned_cols=52 Identities=27% Similarity=0.458 Sum_probs=43.4
Q ss_pred hhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHH
Q 011393 202 INTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTML 265 (487)
Q Consensus 202 ~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~l 265 (487)
++..|+++++|.+|+||+|++.+++.|+.++.. ....+++|+||||+||+..
T Consensus 5 ~~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~------------~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT------------GSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred hcccHHHhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEECCCCCCcccc
Confidence 345799999999999999999999999999852 2234688999999999754
No 388
>PRK14530 adenylate kinase; Provisional
Probab=97.21 E-value=0.00036 Score=66.10 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=27.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
+.|+|.||||+||||+++.+|..++.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3699999999999999999999999877643
No 389
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.00031 Score=62.20 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=26.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 252 LLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
|-+.|||||||||+++.+|..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999875
No 390
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.20 E-value=0.0095 Score=57.37 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=18.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 011393 252 LLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~ 272 (487)
-+|+||||+|||+|+..+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999864
No 391
>PRK13764 ATPase; Provisional
Probab=97.20 E-value=0.00075 Score=72.90 Aligned_cols=69 Identities=23% Similarity=0.334 Sum_probs=41.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC---CeEEEEe-cCcc-----chhccchhHHHHHHHHHHHHhcCCcEEEechhh
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVS-ASSL-----TSKWVGEGEKLVRTLFMVAISRQPCVIFIDEID 318 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~---~~~~~v~-~~~l-----~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD 318 (487)
..++|++||||+||||++++++..+. ..+..+. +.++ ...+.. .......+...+....|.+|++||+-
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 46899999999999999999998764 3332321 1111 111110 00111223333356789999999984
No 392
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.20 E-value=0.0016 Score=61.59 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVAS 271 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~ 271 (487)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 393
>PF13479 AAA_24: AAA domain
Probab=97.20 E-value=0.0019 Score=61.11 Aligned_cols=68 Identities=24% Similarity=0.253 Sum_probs=37.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCe-EEEEecCcc-chhc------cchhHHHHHHHHHHH--HhcCCcEEEechhh
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQAT-FFNVSASSL-TSKW------VGEGEKLVRTLFMVA--ISRQPCVIFIDEID 318 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~-~~~v~~~~l-~~~~------~g~~~~~i~~~f~~a--~~~~p~Il~IDEiD 318 (487)
+..++||||||+|||++|..+ +.+ |+.+..... ...+ .-.+-..+...+... ....-.+|+||-++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 356999999999999999888 322 233333311 0000 001222333333222 12345699999888
Q ss_pred hh
Q 011393 319 SI 320 (487)
Q Consensus 319 ~l 320 (487)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 86
No 394
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.19 E-value=0.0018 Score=62.26 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=29.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEecC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSAS 283 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~~ 283 (487)
.++.-++|.|+||+|||+++..++... +.+++.++..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 445678999999999999999886653 7777777753
No 395
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.19 E-value=0.00057 Score=63.26 Aligned_cols=70 Identities=27% Similarity=0.495 Sum_probs=45.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC--eEEEEecC-ccch---hcc----------chhHHHHHHHHHHHHhcCCcE
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQA--TFFNVSAS-SLTS---KWV----------GEGEKLVRTLFMVAISRQPCV 311 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~--~~~~v~~~-~l~~---~~~----------g~~~~~i~~~f~~a~~~~p~I 311 (487)
....++|.||+|+||||++++++..... ..+.+... ++.. .+. +.....+..++..+....|.+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 4568999999999999999999987532 22222111 1100 000 111234566677777788999
Q ss_pred EEechh
Q 011393 312 IFIDEI 317 (487)
Q Consensus 312 l~IDEi 317 (487)
|+++|+
T Consensus 104 i~igEi 109 (186)
T cd01130 104 IIVGEV 109 (186)
T ss_pred EEEEcc
Confidence 999999
No 396
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.18 E-value=0.0012 Score=58.92 Aligned_cols=34 Identities=21% Similarity=0.449 Sum_probs=27.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCcc
Q 011393 252 LLLFGPPGNGKTMLAKAVASES---QATFFNVSASSL 285 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l 285 (487)
++|.|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999987 666666665433
No 397
>PRK08233 hypothetical protein; Provisional
Probab=97.18 E-value=0.0041 Score=56.80 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=26.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC-CeEEEEec
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQ-ATFFNVSA 282 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~-~~~~~v~~ 282 (487)
.-|.+.|+||+||||+|+.++..++ ..++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 4578899999999999999999985 44544443
No 398
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.18 E-value=0.0048 Score=59.16 Aligned_cols=132 Identities=14% Similarity=0.176 Sum_probs=71.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC---eEEEEecCccc--hhc-----cc------hhHHHHH---HHHHHHH---
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQA---TFFNVSASSLT--SKW-----VG------EGEKLVR---TLFMVAI--- 305 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~---~~~~v~~~~l~--~~~-----~g------~~~~~i~---~~f~~a~--- 305 (487)
.+-.+++.|++|||||+++..+...+.. +++.+....-. .++ +. +.+..+. .......
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 3457999999999999999999776543 22333221110 001 00 0011111 1111111
Q ss_pred -h---cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEcc
Q 011393 306 -S---RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVP 381 (487)
Q Consensus 306 -~---~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~ 381 (487)
. ..+.+|+|||+-. .......+.+++. .|. .-++.+|..+.....|++.++.-.+..+.+.
T Consensus 92 ~~~k~~~~~LiIlDD~~~---------~~~k~~~l~~~~~--~gR----H~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~ 156 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGD---------KKLKSKILRQFFN--NGR----HYNISIIFLSQSYFHLPPNIRSNIDYFIIFN 156 (241)
T ss_pred cccCCCCCeEEEEeCCCC---------chhhhHHHHHHHh--ccc----ccceEEEEEeeecccCCHHHhhcceEEEEec
Confidence 1 2357999999732 1112233444443 222 2237777788888999999988777666665
Q ss_pred CCCHHHHHHHHHHH
Q 011393 382 LPDENVRRLLLKHK 395 (487)
Q Consensus 382 ~Pd~~~r~~il~~~ 395 (487)
.+......|++.+
T Consensus 157 -~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 157 -NSKRDLENIYRNM 169 (241)
T ss_pred -CcHHHHHHHHHhc
Confidence 3555555554443
No 399
>PRK04328 hypothetical protein; Provisional
Probab=97.18 E-value=0.0054 Score=59.55 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=26.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEec
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSA 282 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~ 282 (487)
.++..+|++||||||||+|+..++.+ .|-+.++++.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 45677999999999999999887654 3445555544
No 400
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.18 E-value=0.014 Score=58.70 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=28.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~ 283 (487)
++..++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 45678999999999999999998875 4555555543
No 401
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.17 E-value=0.00042 Score=67.89 Aligned_cols=68 Identities=31% Similarity=0.388 Sum_probs=43.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCC----------eEEEEe-cCccchhc-------cc------hhHHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQA----------TFFNVS-ASSLTSKW-------VG------EGEKLVRTLFMVAI 305 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~----------~~~~v~-~~~l~~~~-------~g------~~~~~i~~~f~~a~ 305 (487)
.+++|.||+|+|||||.++++..... .+..++ ..++...+ ++ +.......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 68999999999999999999988532 222111 11111110 01 11122345666777
Q ss_pred hcCCcEEEechh
Q 011393 306 SRQPCVIFIDEI 317 (487)
Q Consensus 306 ~~~p~Il~IDEi 317 (487)
...|.||++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999996
No 402
>PRK06547 hypothetical protein; Provisional
Probab=97.16 E-value=0.00043 Score=63.24 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=29.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
.++.-|++.|++|+|||++++.+++.++..++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34567889999999999999999999888776543
No 403
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.14 E-value=0.002 Score=63.19 Aligned_cols=68 Identities=25% Similarity=0.325 Sum_probs=37.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccch---hc-cchhHHHHHHHH----HHHHhcCCcEEEechhhhh
Q 011393 252 LLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTS---KW-VGEGEKLVRTLF----MVAISRQPCVIFIDEIDSI 320 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~---~~-~g~~~~~i~~~f----~~a~~~~p~Il~IDEiD~l 320 (487)
|+|+|.||+|||++|+.|+..+ +..+..++...+.- .| ....++.++..+ ..+. ....||++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCCchH
Confidence 7899999999999999998864 56676666444321 11 123345444443 3333 23479999999877
No 404
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.14 E-value=0.0019 Score=62.63 Aligned_cols=34 Identities=24% Similarity=0.455 Sum_probs=27.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCcc
Q 011393 252 LLLFGPPGNGKTMLAKAVASES---QATFFNVSASSL 285 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l 285 (487)
|+|+|+||+||||+|+.++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999886 456666655333
No 405
>PRK13946 shikimate kinase; Provisional
Probab=97.14 E-value=0.00041 Score=64.11 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=30.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
++.|+|.|++|+|||++++.+|+.+|.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 467999999999999999999999999988766
No 406
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.13 E-value=0.0045 Score=60.48 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=28.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSAS 283 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~ 283 (487)
.+...++++||||||||+++..+|.. .|-++++++..
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 45667899999999999999988664 35566666543
No 407
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.13 E-value=0.0016 Score=65.40 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=46.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEEEe-cCccch---h---ccchhHHHHHHHHHHHHhcCCcEEEech
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVS-ASSLTS---K---WVGEGEKLVRTLFMVAISRQPCVIFIDE 316 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~v~-~~~l~~---~---~~g~~~~~i~~~f~~a~~~~p~Il~IDE 316 (487)
..++|+.|++|+||||++++++... +..++.+. ..++.. . +.....-....++..+.+..|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4579999999999999999999875 22333322 112111 0 1111123456777888889999999999
Q ss_pred h
Q 011393 317 I 317 (487)
Q Consensus 317 i 317 (487)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 8
No 408
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.13 E-value=0.00049 Score=62.58 Aligned_cols=32 Identities=31% Similarity=0.464 Sum_probs=28.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
..++|.|++|+|||++++.+|..++.+|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 46899999999999999999999999987654
No 409
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.13 E-value=0.00046 Score=66.04 Aligned_cols=32 Identities=28% Similarity=0.571 Sum_probs=27.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
..|+|.||||+||||+|+.+|+.++.+++.+.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 45999999999999999999999997776543
No 410
>PF13245 AAA_19: Part of AAA domain
Probab=97.12 E-value=0.00082 Score=52.59 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=22.3
Q ss_pred ceeEEeCCCCCcHH-HHHHHHHHHc------CCeEEEEec
Q 011393 250 RGLLLFGPPGNGKT-MLAKAVASES------QATFFNVSA 282 (487)
Q Consensus 250 ~~iLL~GppGtGKT-~la~aiA~~~------~~~~~~v~~ 282 (487)
..+++.|||||||| ++++.++... +..++.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 34666999999999 5666666554 445555554
No 411
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.11 E-value=0.0091 Score=65.65 Aligned_cols=157 Identities=20% Similarity=0.249 Sum_probs=88.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc--C--CeEEEEecCccch------------hcc---ch-------------hHH
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES--Q--ATFFNVSASSLTS------------KWV---GE-------------GEK 295 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~--~--~~~~~v~~~~l~~------------~~~---g~-------------~~~ 295 (487)
..+-+||.-|.|.|||+++-.++... + ..++.++.++--. .+. +. ...
T Consensus 36 ~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~ 115 (894)
T COG2909 36 DYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLES 115 (894)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHH
Confidence 34679999999999999999997532 3 3445555443211 011 11 122
Q ss_pred HHHHHH-HHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHccc
Q 011393 296 LVRTLF-MVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRL 374 (487)
Q Consensus 296 ~i~~~f-~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf 374 (487)
.+..+| +.+....|..|+|||.|.+- +......+.-|+.. .+.++.+|.+|...-.+.-+-.|-=
T Consensus 116 l~~~L~~Ela~~~~pl~LVlDDyHli~-------~~~l~~~l~fLl~~-------~P~~l~lvv~SR~rP~l~la~lRlr 181 (894)
T COG2909 116 LLSSLLNELASYEGPLYLVLDDYHLIS-------DPALHEALRFLLKH-------APENLTLVVTSRSRPQLGLARLRLR 181 (894)
T ss_pred HHHHHHHHHHhhcCceEEEeccccccC-------cccHHHHHHHHHHh-------CCCCeEEEEEeccCCCCcccceeeh
Confidence 334444 34556789999999999882 22234444444432 2344666666643322221111100
Q ss_pred ccEEEccC----CCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHH
Q 011393 375 VKRIYVPL----PDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGS 421 (487)
Q Consensus 375 ~~~i~i~~----Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~ 421 (487)
+..+++.. .+.++-.+++.... +..++..++..|...++|+..+
T Consensus 182 ~~llEi~~~~Lrf~~eE~~~fl~~~~---~l~Ld~~~~~~L~~~teGW~~a 229 (894)
T COG2909 182 DELLEIGSEELRFDTEEAAAFLNDRG---SLPLDAADLKALYDRTEGWAAA 229 (894)
T ss_pred hhHHhcChHhhcCChHHHHHHHHHcC---CCCCChHHHHHHHhhcccHHHH
Confidence 11122221 45677777766543 2567788999999999998654
No 412
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.11 E-value=0.0027 Score=57.41 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=52.8
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCC--eEEEEecCccc--------hhccc-----hhHHHHHHHHHHHHhcCCcE
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQA--TFFNVSASSLT--------SKWVG-----EGEKLVRTLFMVAISRQPCV 311 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~--~~~~v~~~~l~--------~~~~g-----~~~~~i~~~f~~a~~~~p~I 311 (487)
.++..+.|.||.|+|||+|.+.++..... --+.++..++. ...++ ......+-.+..+....|.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL 103 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCE
Confidence 45678999999999999999999986421 11222222111 00011 11223344566667789999
Q ss_pred EEechhhhhhccCCCCcchHHHHHHHHHHHHh
Q 011393 312 IFIDEIDSIMSTRMANENDASRRLKSEFLIQF 343 (487)
Q Consensus 312 l~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l 343 (487)
|++||-..= .+....+.+.+++..+
T Consensus 104 lllDEP~~~-------LD~~~~~~l~~~l~~~ 128 (163)
T cd03216 104 LILDEPTAA-------LTPAEVERLFKVIRRL 128 (163)
T ss_pred EEEECCCcC-------CCHHHHHHHHHHHHHH
Confidence 999997532 2333444445555544
No 413
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.10 E-value=0.0026 Score=56.96 Aligned_cols=26 Identities=42% Similarity=0.557 Sum_probs=23.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
.++..++|.||+|||||+|.+++|.-
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 45678999999999999999999986
No 414
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.10 E-value=0.0032 Score=58.81 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=25.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~ 283 (487)
|+.++|.||+|+||||++--+|..+ +..+..+++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D 38 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD 38 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence 4578999999999999988888764 4455444443
No 415
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.10 E-value=0.0027 Score=59.32 Aligned_cols=111 Identities=21% Similarity=0.319 Sum_probs=60.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMA 326 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~ 326 (487)
+....++|.|+-|+|||+..+.|+.+ ++.-+..... .......+.. .-|+.|||++.+...
T Consensus 50 k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~------~kd~~~~l~~------~~iveldEl~~~~k~--- 110 (198)
T PF05272_consen 50 KNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFD------DKDFLEQLQG------KWIVELDELDGLSKK--- 110 (198)
T ss_pred cCceeeeEecCCcccHHHHHHHHhHH----hccCccccCC------CcHHHHHHHH------hHheeHHHHhhcchh---
Confidence 34457889999999999999999766 2211111111 0111222111 148999999987421
Q ss_pred CcchHHHHHHHHHHHH-hcCCC-------CCCCCcEEEEEecCCCCCC-CHHHHcccccEEEccC
Q 011393 327 NENDASRRLKSEFLIQ-FDGVT-------SNPNDLVIVMGATNKPQEL-DDAVLRRLVKRIYVPL 382 (487)
Q Consensus 327 ~~~~~~~~~~~~ll~~-l~~~~-------~~~~~~vivI~ttn~~~~l-d~al~~Rf~~~i~i~~ 382 (487)
....+..|+.. .+.+. ..-....++|||||..+-| |+.=-|||- .+.+..
T Consensus 111 -----~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~-~v~v~~ 169 (198)
T PF05272_consen 111 -----DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFW-PVEVSK 169 (198)
T ss_pred -----hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEE-EEEEcC
Confidence 11222333322 11111 1112356789999988766 444556775 344443
No 416
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.09 E-value=0.0017 Score=66.41 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..++|.||||+|||+|++.+++..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 345679999999999999999999974
No 417
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.09 E-value=0.0022 Score=68.26 Aligned_cols=95 Identities=19% Similarity=0.238 Sum_probs=61.5
Q ss_pred CCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CeEEEEec-Cccc
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSA-SSLT 286 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~---~~~~~v~~-~~l~ 286 (487)
...+++++.-.++..+.|..++. .+..-++++||+|+||||+..++.+++. ..++.+.- -++.
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~-------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~ 283 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR-------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ 283 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh-------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee
Confidence 34678888878888888887763 1223478999999999999998877754 23443321 1111
Q ss_pred hh-----ccc-hhHHHHHHHHHHHHhcCCcEEEechhh
Q 011393 287 SK-----WVG-EGEKLVRTLFMVAISRQPCVIFIDEID 318 (487)
Q Consensus 287 ~~-----~~g-~~~~~i~~~f~~a~~~~p~Il~IDEiD 318 (487)
-. .+. .........+..+.+..|.||+|.|+-
T Consensus 284 ~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 284 IEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred cCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 00 011 111234455666777899999999984
No 418
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.09 E-value=0.0025 Score=71.19 Aligned_cols=101 Identities=17% Similarity=0.256 Sum_probs=57.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc---C--CeEEEEecCccchh----ccchhHHHHHHHHHHH----------HhcCCc
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASES---Q--ATFFNVSASSLTSK----WVGEGEKLVRTLFMVA----------ISRQPC 310 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~---~--~~~~~v~~~~l~~~----~~g~~~~~i~~~f~~a----------~~~~p~ 310 (487)
+.++|.|+||||||++++++...+ + ..++-+.++.-..+ ..|.....++.++... ......
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 468999999999999999996643 4 44444443321111 1122223344444211 012357
Q ss_pred EEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 011393 311 VIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQEL 366 (487)
Q Consensus 311 Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~l 366 (487)
+|+|||+..+ ....+..|+..+. .+.+++++|-.+....+
T Consensus 419 llIvDEaSMv-----------d~~~~~~Ll~~~~-----~~~rlilvGD~~QLpsV 458 (720)
T TIGR01448 419 LLIVDESSMM-----------DTWLALSLLAALP-----DHARLLLVGDTDQLPSV 458 (720)
T ss_pred EEEEeccccC-----------CHHHHHHHHHhCC-----CCCEEEEECccccccCC
Confidence 9999999776 2334455554332 24457887766554444
No 419
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.09 E-value=0.00058 Score=62.41 Aligned_cols=34 Identities=26% Similarity=0.644 Sum_probs=30.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEec
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~ 282 (487)
...|+|.||+|+|||++++.+|..++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3579999999999999999999999998877653
No 420
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.08 E-value=0.0076 Score=57.37 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=29.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASS 284 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~ 284 (487)
.++..+++.|+||+|||+++..++.+ .+.++++++...
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 44667899999999999999988754 366777766643
No 421
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.08 E-value=0.0036 Score=56.99 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=22.8
Q ss_pred ceeEEeCCCCCcHHH-HHHHHHHHcC----CeEEEEec
Q 011393 250 RGLLLFGPPGNGKTM-LAKAVASESQ----ATFFNVSA 282 (487)
Q Consensus 250 ~~iLL~GppGtGKT~-la~aiA~~~~----~~~~~v~~ 282 (487)
..+++.||+|+|||+ ++..+..... ..++.+.+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 579999999999999 5555555433 33555554
No 422
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.08 E-value=0.0015 Score=65.45 Aligned_cols=63 Identities=29% Similarity=0.503 Sum_probs=46.0
Q ss_pred cc-cccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC-CeEEEEecC
Q 011393 215 WE-DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-ATFFNVSAS 283 (487)
Q Consensus 215 ~~-di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~-~~~~~v~~~ 283 (487)
|+ ++.|+++++..|-+++....+ +.....+-++|.||+|+|||+|++.+.+-+. .+++.+..+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~ 123 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQ------GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGC 123 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHh------ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCC
Confidence 44 899999999999887753222 2334446789999999999999999988653 355555433
No 423
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.08 E-value=0.00062 Score=68.99 Aligned_cols=72 Identities=24% Similarity=0.381 Sum_probs=47.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCC--eEEEEec-Cccch------------hccchhHHHHHHHHHHHHhcCCcE
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQA--TFFNVSA-SSLTS------------KWVGEGEKLVRTLFMVAISRQPCV 311 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~--~~~~v~~-~~l~~------------~~~g~~~~~i~~~f~~a~~~~p~I 311 (487)
....++|+.||+|+||||++++++..... .++.+.- .++.- ...+...-....++..+.+..|..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 44578999999999999999999988642 2222211 11100 001112234567788888899999
Q ss_pred EEechhh
Q 011393 312 IFIDEID 318 (487)
Q Consensus 312 l~IDEiD 318 (487)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999983
No 424
>PLN02200 adenylate kinase family protein
Probab=97.08 E-value=0.00064 Score=65.35 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=30.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~ 287 (487)
.+..|++.||||+|||++++.+|..+|... ++.+++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdllR 79 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLLR 79 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHHH
Confidence 345789999999999999999999998754 56656543
No 425
>PRK14528 adenylate kinase; Provisional
Probab=97.05 E-value=0.00059 Score=63.16 Aligned_cols=31 Identities=26% Similarity=0.552 Sum_probs=27.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
+.|++.||||+|||++++.+|...+.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999998877553
No 426
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.04 E-value=0.0016 Score=66.54 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=21.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc
Q 011393 251 GLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~ 273 (487)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 427
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.03 E-value=0.0037 Score=62.95 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=29.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---------CCeEEEEecCc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSASS 284 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---------~~~~~~v~~~~ 284 (487)
..+.-++|+||||+|||+++..+|... +..+++++...
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 345678899999999999999998653 34677777654
No 428
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.03 E-value=0.0044 Score=62.79 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=27.9
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---------CCeEEEEecCc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSASS 284 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---------~~~~~~v~~~~ 284 (487)
....-..|+||||||||.|+..+|-.. +..+++++...
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 445567899999999999999886321 35677777644
No 429
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.02 E-value=0.0021 Score=67.08 Aligned_cols=101 Identities=23% Similarity=0.275 Sum_probs=64.5
Q ss_pred ccccCCC-CCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEE-Eec
Q 011393 205 AIVDRSP-SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFN-VSA 282 (487)
Q Consensus 205 ~~~~~~~-~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~-v~~ 282 (487)
.++++.. ..++++++......+.+.+.+. .|..-+|++||.|+|||++..++.++++.+... ++.
T Consensus 226 Ril~~~~~~l~l~~Lg~~~~~~~~~~~~~~-------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti 292 (500)
T COG2804 226 RILDKDQVILDLEKLGMSPFQLARLLRLLN-------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITI 292 (500)
T ss_pred EEeccccccCCHHHhCCCHHHHHHHHHHHh-------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEe
Confidence 3444433 6788999999988888888874 333447889999999999999999987644331 122
Q ss_pred Cccch---h-----ccc-hhHHHHHHHHHHHHhcCCcEEEechhh
Q 011393 283 SSLTS---K-----WVG-EGEKLVRTLFMVAISRQPCVIFIDEID 318 (487)
Q Consensus 283 ~~l~~---~-----~~g-~~~~~i~~~f~~a~~~~p~Il~IDEiD 318 (487)
.+-.. . -+. ...-.....+....+..|.||++.||-
T Consensus 293 EDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 293 EDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred eCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 11110 0 000 011122344455567889999999994
No 430
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.01 E-value=0.00065 Score=62.51 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=25.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
.-|+|.||||+||||+++.++..+|..++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 358899999999999999999998866543
No 431
>PRK02496 adk adenylate kinase; Provisional
Probab=97.01 E-value=0.00066 Score=62.59 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=26.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
.++|.||||+|||++++.+|..++.+++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998776543
No 432
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.00 E-value=0.0026 Score=58.39 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=43.3
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCC--eEEEEecCcc--chhc--cchhHHHHHHHHHHHHhcCCcEEEechhhh
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQA--TFFNVSASSL--TSKW--VGEGEKLVRTLFMVAISRQPCVIFIDEIDS 319 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~--~~~~v~~~~l--~~~~--~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~ 319 (487)
.+...+.|.||.|+|||||++.++..... --+.++...+ .... ... ...-+-.+..+....|.++++||--.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSg-Gq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSG-GELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCH-HHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 34567889999999999999999986421 0112221111 0110 111 12233445556667899999999753
No 433
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.00 E-value=0.0025 Score=64.00 Aligned_cols=70 Identities=21% Similarity=0.404 Sum_probs=46.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEEEec-Cccc---hh---ccchhHHHHHHHHHHHHhcCCcEEEech
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSA-SSLT---SK---WVGEGEKLVRTLFMVAISRQPCVIFIDE 316 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~v~~-~~l~---~~---~~g~~~~~i~~~f~~a~~~~p~Il~IDE 316 (487)
..++++.||+|+|||+++++++.+. ...++.+.- .++. .. +..........++..+.+..|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4689999999999999999999863 122332221 1111 01 1111223467788888889999999999
Q ss_pred hh
Q 011393 317 ID 318 (487)
Q Consensus 317 iD 318 (487)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 93
No 434
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.99 E-value=0.0011 Score=66.51 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=31.8
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
..+...|+|.|+||||||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 355678999999999999999999999999998543
No 435
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.99 E-value=0.00064 Score=64.15 Aligned_cols=28 Identities=39% Similarity=0.682 Sum_probs=25.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 252 LLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
|+|.||||+|||++|+.+|...+..++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999877655
No 436
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.98 E-value=0.005 Score=61.79 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=29.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---------CCeEEEEecCc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSASS 284 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---------~~~~~~v~~~~ 284 (487)
..+.-++++||||+|||+++..+|... +..+++++...
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 345567899999999999999998663 33777887655
No 437
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.98 E-value=0.00057 Score=61.34 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=26.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
.|+++|.|||||||+++.++ ++|..++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 9998887755
No 438
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.98 E-value=0.0052 Score=68.21 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=48.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHH---HcCCeEEEEecCccch-h-----------c----cchhHHHHHHHHHHHHhc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVAS---ESQATFFNVSASSLTS-K-----------W----VGEGEKLVRTLFMVAISR 307 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~---~~~~~~~~v~~~~l~~-~-----------~----~g~~~~~i~~~f~~a~~~ 307 (487)
.+...++++||||||||+|+..++. ..|..+++++...-.. . + ....+..+..+-......
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~ 137 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSG 137 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcC
Confidence 3456788999999999999977644 3466677776654221 0 0 011233333333334456
Q ss_pred CCcEEEechhhhhhc
Q 011393 308 QPCVIFIDEIDSIMS 322 (487)
Q Consensus 308 ~p~Il~IDEiD~l~~ 322 (487)
.+.+|+||-+..|.+
T Consensus 138 ~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 138 ALDIVVIDSVAALVP 152 (790)
T ss_pred CCeEEEEcchhhhcc
Confidence 789999999999986
No 439
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.98 E-value=0.0012 Score=66.26 Aligned_cols=72 Identities=17% Similarity=0.352 Sum_probs=46.9
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCC--eEEEEe-cCccch---hc---------cchhHHHHHHHHHHHHhcCCcE
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQA--TFFNVS-ASSLTS---KW---------VGEGEKLVRTLFMVAISRQPCV 311 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~--~~~~v~-~~~l~~---~~---------~g~~~~~i~~~f~~a~~~~p~I 311 (487)
....++++.||+|+||||++++++..... .++.+. ..++.. .+ .+...-....++..+....|.+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 34578999999999999999999987532 222221 111100 00 0111234566777788889999
Q ss_pred EEechhh
Q 011393 312 IFIDEID 318 (487)
Q Consensus 312 l~IDEiD 318 (487)
|++||+-
T Consensus 222 ii~gE~r 228 (308)
T TIGR02788 222 IILGELR 228 (308)
T ss_pred EEEeccC
Confidence 9999994
No 440
>PRK10436 hypothetical protein; Provisional
Probab=96.98 E-value=0.0032 Score=66.41 Aligned_cols=94 Identities=16% Similarity=0.259 Sum_probs=61.9
Q ss_pred CCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CeEEEEec-Cccch
Q 011393 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSA-SSLTS 287 (487)
Q Consensus 212 ~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~---~~~~~v~~-~~l~~ 287 (487)
..++++++-.+...+.+.+.+. .+..-||++||+|+||||+..++..+++ .+++.+.- -++.-
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~-------------~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l 260 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQ-------------QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL 260 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHH-------------hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence 4578888888888888887763 2334589999999999999988877753 33433321 11110
Q ss_pred h-----ccc-hhHHHHHHHHHHHHhcCCcEEEechhh
Q 011393 288 K-----WVG-EGEKLVRTLFMVAISRQPCVIFIDEID 318 (487)
Q Consensus 288 ~-----~~g-~~~~~i~~~f~~a~~~~p~Il~IDEiD 318 (487)
. .++ .........+..+.+..|.||+|.|+-
T Consensus 261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 0 111 112235566677778899999999984
No 441
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.97 E-value=0.0033 Score=58.17 Aligned_cols=76 Identities=24% Similarity=0.314 Sum_probs=43.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc-------------CCeEEEEecCccchh-----------c-------c-c----
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES-------------QATFFNVSASSLTSK-----------W-------V-G---- 291 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~-------------~~~~~~v~~~~l~~~-----------~-------~-g---- 291 (487)
...-++|+||||+|||+++..++... +.+++.++...-... + . .
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccc
Confidence 34568999999999999999987753 236677766432110 0 0 0
Q ss_pred -------------hhHHHHHHHHHHHHh-cCCcEEEechhhhhhcc
Q 011393 292 -------------EGEKLVRTLFMVAIS-RQPCVIFIDEIDSIMST 323 (487)
Q Consensus 292 -------------~~~~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~ 323 (487)
.....+..+.+.+.. ..+.+|+||-+..+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 001223444555545 56899999999999876
No 442
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.97 E-value=0.0024 Score=56.52 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=43.4
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCe--EEEEecCc---cchhccchhHHHHHHHHHHHHhcCCcEEEechhhh
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQAT--FFNVSASS---LTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDS 319 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~--~~~v~~~~---l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~ 319 (487)
.++..+.|.||+|+|||+|+++++...... -+.++... +...+- ....-+-.+..+....|.++++||-..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS--~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS--GGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 456778999999999999999999874210 11111110 001111 112233345566677899999999753
No 443
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.96 E-value=0.0033 Score=57.20 Aligned_cols=34 Identities=32% Similarity=0.316 Sum_probs=27.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCc
Q 011393 251 GLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~ 284 (487)
-+++.||||+|||+++..+|..+ +..+..+++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 37899999999999999998764 66677666653
No 444
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.95 E-value=0.0043 Score=62.25 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=28.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH---------cCCeEEEEecCc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE---------SQATFFNVSASS 284 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~---------~~~~~~~v~~~~ 284 (487)
....-+.|+||||+|||.++..+|-. .+..+++++...
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 44566789999999999999987642 245677777654
No 445
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.95 E-value=0.00077 Score=63.86 Aligned_cols=29 Identities=38% Similarity=0.630 Sum_probs=26.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
.|+++||||+|||++++.+|..++..++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 48999999999999999999999976655
No 446
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.94 E-value=0.0066 Score=56.87 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVA 270 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA 270 (487)
...++|+||.|+|||++.+.++
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHH
Confidence 3579999999999999999998
No 447
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.92 E-value=0.0032 Score=68.40 Aligned_cols=95 Identities=16% Similarity=0.231 Sum_probs=62.6
Q ss_pred CCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CeEEEEecC----
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSAS---- 283 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~---~~~~~v~~~---- 283 (487)
+..++++++-.+...+.+.+++. .+..-||++||+|+||||+..++.++++ .+++.+.-.
T Consensus 291 ~~~~l~~lg~~~~~~~~l~~~~~-------------~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~ 357 (564)
T TIGR02538 291 AQLDIDKLGFEPDQKALFLEAIH-------------KPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEIN 357 (564)
T ss_pred ccCCHHHcCCCHHHHHHHHHHHH-------------hcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceec
Confidence 34578888888888888887774 2234578999999999999988887764 234332211
Q ss_pred --ccchhccc-hhHHHHHHHHHHHHhcCCcEEEechhh
Q 011393 284 --SLTSKWVG-EGEKLVRTLFMVAISRQPCVIFIDEID 318 (487)
Q Consensus 284 --~l~~~~~g-~~~~~i~~~f~~a~~~~p~Il~IDEiD 318 (487)
.+....+. .........+..+.+..|.||++.|+-
T Consensus 358 ~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 358 LPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred CCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 11110111 111245566777778899999999994
No 448
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0063 Score=61.81 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=60.3
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHc--CCeEEEEecCccchhc------cc--------hhHHHHHHHHHHHHhcCC
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASES--QATFFNVSASSLTSKW------VG--------EGEKLVRTLFMVAISRQP 309 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~~--~~~~~~v~~~~l~~~~------~g--------~~~~~i~~~f~~a~~~~p 309 (487)
.-+..-+|+-|.||.|||||.-.++..+ ..+++++++.+-...+ .+ ..+-++..+.......+|
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p 169 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP 169 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence 3556679999999999999988887765 2379999987643321 11 235567788888888999
Q ss_pred cEEEechhhhhhccC
Q 011393 310 CVIFIDEIDSIMSTR 324 (487)
Q Consensus 310 ~Il~IDEiD~l~~~~ 324 (487)
.+++||-|..+....
T Consensus 170 ~lvVIDSIQT~~s~~ 184 (456)
T COG1066 170 DLVVIDSIQTLYSEE 184 (456)
T ss_pred CEEEEeccceeeccc
Confidence 999999999997665
No 449
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.91 E-value=0.00067 Score=58.04 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=21.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 011393 252 LLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~ 273 (487)
|+|.|+||+||||+|+.++.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 450
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.90 E-value=0.0043 Score=55.55 Aligned_cols=73 Identities=25% Similarity=0.420 Sum_probs=44.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCe--EEEEecCccch-------hccc-----hhHHHHHHHHHHHHhcCCcEE
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQAT--FFNVSASSLTS-------KWVG-----EGEKLVRTLFMVAISRQPCVI 312 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~--~~~v~~~~l~~-------~~~g-----~~~~~i~~~f~~a~~~~p~Il 312 (487)
.+...+.|.||.|+|||+|+++++...... -+.++...+.. ..++ ......+-.+..+....|.++
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 445689999999999999999999875321 12333222110 0011 011222333555556779999
Q ss_pred Eechhhh
Q 011393 313 FIDEIDS 319 (487)
Q Consensus 313 ~IDEiD~ 319 (487)
++||...
T Consensus 103 ilDEp~~ 109 (157)
T cd00267 103 LLDEPTS 109 (157)
T ss_pred EEeCCCc
Confidence 9999864
No 451
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.89 E-value=0.0013 Score=50.40 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 011393 252 LLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~ 273 (487)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999996
No 452
>PRK14527 adenylate kinase; Provisional
Probab=96.89 E-value=0.00081 Score=62.46 Aligned_cols=31 Identities=29% Similarity=0.524 Sum_probs=26.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
+.-|+++||||+|||++|+.+|...+...+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 4579999999999999999999998876544
No 453
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.88 E-value=0.01 Score=53.26 Aligned_cols=29 Identities=21% Similarity=0.137 Sum_probs=22.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc---CCeEEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASES---QATFFN 279 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~---~~~~~~ 279 (487)
-|.+|+++|.|||++|-++|-+. |..+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 47789999999999999997663 555444
No 454
>PRK06696 uridine kinase; Validated
Probab=96.88 E-value=0.0026 Score=60.58 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=31.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLT 286 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~ 286 (487)
+.-|.+.|++|+||||+|+.|+..+ |.+++.++..++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4578899999999999999999998 6677777766553
No 455
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.87 E-value=0.0043 Score=56.59 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=29.2
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCc
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~ 284 (487)
++..|.|.|+||+|||++++.++..+ +..+..++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 35578999999999999999999886 44566666544
No 456
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.86 E-value=0.0035 Score=70.19 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=42.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccchhc----cchhHHHHHHHHHH-HH----hcCCcEEEechh
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLTSKW----VGEGEKLVRTLFMV-AI----SRQPCVIFIDEI 317 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~~~~----~g~~~~~i~~~f~~-a~----~~~p~Il~IDEi 317 (487)
+-++|.|+||||||++++++... .|..++.+.++...... .|.....+..+... .. .....+|+|||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 46789999999999999999654 46677666554332221 12222223333211 10 124579999999
Q ss_pred hhh
Q 011393 318 DSI 320 (487)
Q Consensus 318 D~l 320 (487)
-.+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 666
No 457
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.86 E-value=0.014 Score=55.75 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=27.7
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEec
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSA 282 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~ 282 (487)
..++..++++||||+|||+++..++.+ .+..++.++.
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 355678999999999999999987653 2555555554
No 458
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.86 E-value=0.012 Score=54.27 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=18.1
Q ss_pred eEEeCCCCCcHHHHHHHHH
Q 011393 252 LLLFGPPGNGKTMLAKAVA 270 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA 270 (487)
++|+||.|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 459
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.85 E-value=0.0032 Score=58.88 Aligned_cols=41 Identities=22% Similarity=0.410 Sum_probs=31.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc-CCeEEEEecCccch
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES-QATFFNVSASSLTS 287 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~-~~~~~~v~~~~l~~ 287 (487)
..|.-+++.|+||+|||+++..+..++ +..++.+++.++..
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 346778999999999999999999988 77888888877654
No 460
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.85 E-value=0.0089 Score=55.92 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVA 270 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA 270 (487)
+.++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 461
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.85 E-value=0.0014 Score=62.01 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=17.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 011393 252 LLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~ 273 (487)
.+++||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777766654
No 462
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.0087 Score=55.30 Aligned_cols=106 Identities=12% Similarity=0.019 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhc-CCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHccc
Q 011393 296 LVRTLFMVAISR-QPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRL 374 (487)
Q Consensus 296 ~i~~~f~~a~~~-~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf 374 (487)
.++.+...+... ....++|+++|.| .....+.||..++ .|+.++++|..|..+..+.+.+++||
T Consensus 41 ~iReii~~~~~~~~~~k~iI~~a~~l-----------~~~A~NaLLK~LE----EPp~~~~fiL~t~~~~~llpTI~SRc 105 (206)
T PRK08485 41 DAKEVIAEAYIAESEEKIIVIAAPSY-----------GIEAQNALLKILE----EPPKNICFIIVAKSKNLLLPTIRSRL 105 (206)
T ss_pred HHHHHHHHHhhCCCCcEEEEEchHhh-----------CHHHHHHHHHHhc----CCCCCeEEEEEeCChHhCchHHHhhh
Confidence 445555544321 1234568899988 4567788999888 46667888888888999999999999
Q ss_pred cc------------EEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCC
Q 011393 375 VK------------RIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEG 417 (487)
Q Consensus 375 ~~------------~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G 417 (487)
.. .+.+...+.++....+.. +.+.++....+.++.++....|
T Consensus 106 ~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~ 159 (206)
T PRK08485 106 IIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKE 159 (206)
T ss_pred eeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHH
Confidence 74 366777788888888877 5555555455556666665544
No 463
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.82 E-value=0.012 Score=62.91 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=53.8
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhcc------c----------------------hhH
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWV------G----------------------EGE 294 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~------g----------------------~~~ 294 (487)
-.++..+|+.||||+|||+|+-.++.+. |-++++++..+-..... | ..+
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~ 339 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLE 339 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChH
Confidence 4556779999999999999999997753 55666666544221100 0 114
Q ss_pred HHHHHHHHHHHhcCCcEEEechhhhhhc
Q 011393 295 KLVRTLFMVAISRQPCVIFIDEIDSIMS 322 (487)
Q Consensus 295 ~~i~~~f~~a~~~~p~Il~IDEiD~l~~ 322 (487)
..+..+.+......|.+|+||-+..+..
T Consensus 340 ~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 340 DHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 5566666677777899999999998754
No 464
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.82 E-value=0.0039 Score=55.73 Aligned_cols=66 Identities=24% Similarity=0.310 Sum_probs=43.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhcc---ch----hHHHHHHHHHHHH--hcCCcEEEec
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWV---GE----GEKLVRTLFMVAI--SRQPCVIFID 315 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~---g~----~~~~i~~~f~~a~--~~~p~Il~ID 315 (487)
..|.|+|.||+|||+||+++.+.+ +.+++.++...+...+. +. -...++.+.+.|+ ..+..++++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva 80 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA 80 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 468899999999999999998875 78899998876654321 11 1334455554443 2344555554
No 465
>PLN02674 adenylate kinase
Probab=96.81 E-value=0.0013 Score=63.29 Aligned_cols=36 Identities=25% Similarity=0.513 Sum_probs=29.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~ 286 (487)
...|+|.||||+||+|+++.+|...+..+ ++..++.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~Gdll 66 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDML 66 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHH
Confidence 46799999999999999999999998655 4444544
No 466
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.79 E-value=0.0011 Score=59.82 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=21.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCeEE
Q 011393 252 LLLFGPPGNGKTMLAKAVASESQATFF 278 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~~~~~~ 278 (487)
|.|+|+||||||||++.++.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999999 87776
No 467
>PRK01184 hypothetical protein; Provisional
Probab=96.78 E-value=0.0013 Score=60.68 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=25.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
-|+|+||||+||||+++ ++++.|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58899999999999998 788899877554
No 468
>PTZ00035 Rad51 protein; Provisional
Probab=96.78 E-value=0.0081 Score=60.94 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=28.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---------CCeEEEEecCc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSASS 284 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---------~~~~~~v~~~~ 284 (487)
....-+.|+||||+|||+++..++... +..+++++...
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 445668899999999999999987532 34566666544
No 469
>PRK14700 recombination factor protein RarA; Provisional
Probab=96.78 E-value=0.012 Score=57.76 Aligned_cols=108 Identities=21% Similarity=0.262 Sum_probs=75.7
Q ss_pred CCcEEEEEec--CCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc------CCCCCChhhHHHHHHHcCCCCHHH
Q 011393 351 NDLVIVMGAT--NKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG------QAFSLPGGDLERLVRETEGYSGSD 422 (487)
Q Consensus 351 ~~~vivI~tt--n~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~------~~~~l~~~~l~~La~~t~G~s~~d 422 (487)
.+.+++||+| |+...+.++|++|+. .+.+..++.++...++++.+.. ..+.++++.++.|+..+.|..+..
T Consensus 6 ~G~i~LIGATTENP~f~vn~ALlSR~~-v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~a 84 (300)
T PRK14700 6 SGKIILIGATTENPTYYLNDALVSRLF-ILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKI 84 (300)
T ss_pred CCcEEEEeecCCCccceecHhhhhhhh-eeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHH
Confidence 3557888876 666899999999996 7899999999999999998864 236689999999999998865544
Q ss_pred HHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhCCCCCH
Q 011393 423 LQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNK 471 (487)
Q Consensus 423 L~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ps~s~ 471 (487)
|.. ++.|+... . ..+...||.+++.+.+.+......+
T Consensus 85 LN~-LE~a~~~~-----~------~~~~~~it~~~~~~~~~~~~~~yDk 121 (300)
T PRK14700 85 LNL-LERMFLIS-----T------RGDEIYLNKELFDQAVGETSRDFHR 121 (300)
T ss_pred HHH-HHHHHhhc-----c------ccCCCccCHHHHHHHHhHHHhcccC
Confidence 433 34433211 0 0011247888888887654444443
No 470
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.77 E-value=0.0017 Score=56.43 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=26.4
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCe
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQAT 276 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~ 276 (487)
.+...++|.|+.|+|||++++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 445679999999999999999999998864
No 471
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.76 E-value=0.001 Score=59.24 Aligned_cols=33 Identities=33% Similarity=0.580 Sum_probs=26.3
Q ss_pred EeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchh
Q 011393 254 LFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (487)
Q Consensus 254 L~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~ 288 (487)
|.||||+|||++++.||.+.+.. .++..++...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr~ 33 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLRE 33 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHHH
Confidence 68999999999999999999865 4555555443
No 472
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.76 E-value=0.0057 Score=62.82 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=23.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.+..+++.||.|||||++.+++...+.
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 356899999999999999999988763
No 473
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.75 E-value=0.0058 Score=57.01 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=21.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVAS 271 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~ 271 (487)
..+..+.+.||+|+|||||.|++..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4456799999999999999999965
No 474
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.75 E-value=0.0061 Score=61.25 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=28.8
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHc------C---CeEEEEecCc
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASES------Q---ATFFNVSASS 284 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~~------~---~~~~~v~~~~ 284 (487)
..+..-+.++||||+|||+++..+|... + ..+++++...
T Consensus 93 i~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 93 IETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 3455678899999999999999987521 1 3567777655
No 475
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.75 E-value=0.00081 Score=68.55 Aligned_cols=45 Identities=36% Similarity=0.506 Sum_probs=37.6
Q ss_pred CCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 212 ~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++++|..-.+.++++|.+-. .|||+.||||.||||+|+|+|.-.
T Consensus 243 k~~ledY~L~dkl~eRL~era-----------------eGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 243 KLSLEDYGLSDKLKERLEERA-----------------EGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred EechhhcCCCHHHHHHHHhhh-----------------cceEEecCCCCChhHHHHHHHHHH
Confidence 356788777788888887644 689999999999999999999864
No 476
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.74 E-value=0.036 Score=49.67 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=41.5
Q ss_pred eCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhh
Q 011393 255 FGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSI 320 (487)
Q Consensus 255 ~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l 320 (487)
.+.+||||||++.++++-++- +-.+.-.++.++ ...+.++.+.+........++|+|-=..+
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~ 66 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQ 66 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCch
Confidence 588999999999999999882 223444455444 34556666666654455668888854433
No 477
>PRK04182 cytidylate kinase; Provisional
Probab=96.73 E-value=0.0015 Score=59.60 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=26.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
.|+|.|++|+|||++++.+|..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48899999999999999999999988765
No 478
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.73 E-value=0.0052 Score=57.31 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=28.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccc
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~ 286 (487)
-|.|+|++|+|||++++.++...|++++. +..+.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~--~D~~~ 36 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD--ADIYA 36 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee--CcHHH
Confidence 48899999999999999999988888764 44443
No 479
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.72 E-value=0.011 Score=52.02 Aligned_cols=23 Identities=48% Similarity=0.897 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
+.|+|.||.|+|||+|++++-.+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 46899999999999999999664
No 480
>PRK14526 adenylate kinase; Provisional
Probab=96.71 E-value=0.0017 Score=61.28 Aligned_cols=33 Identities=36% Similarity=0.649 Sum_probs=27.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCcc
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l 285 (487)
.++|+||||+||||+++.+|..++..++ +..++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~l 34 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDL 34 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChH
Confidence 4889999999999999999999887654 34444
No 481
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.70 E-value=0.0016 Score=64.79 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=25.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc-CCeEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASES-QATFFN 279 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~-~~~~~~ 279 (487)
.-|+|.|||||||||+|+.+++++ +..++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 458899999999999999999998 554443
No 482
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.70 E-value=0.0072 Score=69.05 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=58.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccchhc----cchhHHHHHHHHHHHH-----hcCCcEEEechhh
Q 011393 251 GLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLTSKW----VGEGEKLVRTLFMVAI-----SRQPCVIFIDEID 318 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~~~~----~g~~~~~i~~~f~~a~-----~~~p~Il~IDEiD 318 (487)
-++|.|++|||||++.+++... .|..++-+.++.....- .|.....+..++.... .....||+|||+-
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 5679999999999998877543 46677666554332221 2223344444432111 1234699999997
Q ss_pred hhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 011393 319 SIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQEL 366 (487)
Q Consensus 319 ~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~l 366 (487)
.+ ..+.+..|+.... ..+.++++||-+.....+
T Consensus 444 Mv-----------~~~~m~~LL~~a~----~~garvVLVGD~~QLpsV 476 (988)
T PRK13889 444 MV-----------GTRQLERVLSHAA----DAGAKVVLVGDPQQLQAI 476 (988)
T ss_pred cC-----------CHHHHHHHHHhhh----hCCCEEEEECCHHHcCCC
Confidence 65 2334445554433 224558888866544444
No 483
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.70 E-value=0.0016 Score=58.85 Aligned_cols=30 Identities=33% Similarity=0.569 Sum_probs=26.7
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
-|.|+|++|+|||++|+.+++.++.+++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 378999999999999999999999887553
No 484
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.67 E-value=0.0098 Score=63.92 Aligned_cols=26 Identities=46% Similarity=0.695 Sum_probs=24.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
+++..+|+.||+|||||+|.|++|.-
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56788999999999999999999986
No 485
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.67 E-value=0.0094 Score=60.43 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=28.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---------CCeEEEEecCc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSASS 284 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---------~~~~~~v~~~~ 284 (487)
.+..-+.++|+||+|||.++..+|-.. +..+++++...
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~ 167 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG 167 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence 445667899999999999999887431 23677777655
No 486
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.66 E-value=0.01 Score=54.32 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
.++.-+.|.||.|+|||||.+++...
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 45567899999999999999999743
No 487
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.66 E-value=0.0038 Score=63.03 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=28.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEec
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~ 282 (487)
..|+|.|+||+|||+|++.++...+.+++.--+
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~ 195 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYA 195 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehh
Confidence 579999999999999999999999888764333
No 488
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.64 E-value=0.015 Score=67.16 Aligned_cols=74 Identities=18% Similarity=0.303 Sum_probs=48.1
Q ss_pred cEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC--CCCHHHHcccccEEEccCCCHHH
Q 011393 310 CVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ--ELDDAVLRRLVKRIYVPLPDENV 387 (487)
Q Consensus 310 ~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~--~ld~al~~Rf~~~i~i~~Pd~~~ 387 (487)
.||+|||+..|+... ... +..++..|-.... .-.|.+|.+|.+|. .|...++.-|..+|.|..-+..+
T Consensus 1142 IVVIIDE~AdLm~~~-------~ke-vE~lI~rLAqkGR--AaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~D 1211 (1355)
T PRK10263 1142 IVVLVDEFADLMMTV-------GKK-VEELIARLAQKAR--AAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKID 1211 (1355)
T ss_pred EEEEEcChHHHHhhh-------hHH-HHHHHHHHHHHhh--hcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHHH
Confidence 389999998876431 112 2233333322111 12377888888886 56777888899999999988887
Q ss_pred HHHHHH
Q 011393 388 RRLLLK 393 (487)
Q Consensus 388 r~~il~ 393 (487)
-..||.
T Consensus 1212 SrtILd 1217 (1355)
T PRK10263 1212 SRTILD 1217 (1355)
T ss_pred HHHhcC
Confidence 777764
No 489
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.63 E-value=0.014 Score=63.78 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
+-.+|.|+||||||++++.+...+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999998886543
No 490
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.62 E-value=0.024 Score=55.54 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=27.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEec
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~ 282 (487)
++..++|.||+|+|||++++.++..+ +..+..+++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~ 111 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 111 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEec
Confidence 45789999999999999999998875 344544554
No 491
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.62 E-value=0.0032 Score=61.38 Aligned_cols=69 Identities=20% Similarity=0.345 Sum_probs=46.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCC----eEEEEec-Cc---------cchhccchhHHHHHHHHHHHHhcCCcEEEec
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQA----TFFNVSA-SS---------LTSKWVGEGEKLVRTLFMVAISRQPCVIFID 315 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~----~~~~v~~-~~---------l~~~~~g~~~~~i~~~f~~a~~~~p~Il~ID 315 (487)
.=||++||.|+||||..-++-.+.+. +++.+.- -+ +...-+|.........+..|.+..|.||++-
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvG 205 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVG 205 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34789999999999999898887653 3333221 11 1122344444455566677778899999999
Q ss_pred hhh
Q 011393 316 EID 318 (487)
Q Consensus 316 EiD 318 (487)
|+-
T Consensus 206 EmR 208 (353)
T COG2805 206 EMR 208 (353)
T ss_pred ccc
Confidence 984
No 492
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.61 E-value=0.0029 Score=58.93 Aligned_cols=38 Identities=32% Similarity=0.459 Sum_probs=28.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchh
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~ 288 (487)
-++|+||+|||||.+|-++|+++|.+++..+.-.+...
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~ 40 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPE 40 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccc
Confidence 47899999999999999999999999999887555443
No 493
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.60 E-value=0.0074 Score=58.30 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=46.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCe--EEEEecCccch-------------------------hccch--hHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQAT--FFNVSASSLTS-------------------------KWVGE--GEKLV 297 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~--~~~v~~~~l~~-------------------------~~~g~--~~~~i 297 (487)
..+..+-|.|++||||||++|.+..-.... -+.++..++.. +|..+ +.+.-
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 345678999999999999999998864321 12222222111 11111 12233
Q ss_pred HHHHHHHHhcCCcEEEechhhhhh
Q 011393 298 RTLFMVAISRQPCVIFIDEIDSIM 321 (487)
Q Consensus 298 ~~~f~~a~~~~p~Il~IDEiD~l~ 321 (487)
+-.+..|....|.+|+.||.-+.+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSAL 140 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhc
Confidence 344556666789999999997763
No 494
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.58 E-value=0.22 Score=51.32 Aligned_cols=231 Identities=17% Similarity=0.218 Sum_probs=122.7
Q ss_pred ChHHHHHHHHHHhhccccC--hhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh------
Q 011393 220 GLEKAKQALMEMVILPAKR--RDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK------ 288 (487)
Q Consensus 220 G~~~~k~~L~~~v~~~~~~--~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~------ 288 (487)
-.+.+++.+.+-+...+.. ..+... ..+|..||+.|--|+||||.+--+|..+ +..+..+.|......
T Consensus 70 p~q~~iKiV~eELv~llG~~~~~~~l~-~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~ 148 (451)
T COG0541 70 PGQQFIKIVYEELVKLLGGENSELNLA-KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLK 148 (451)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcccccC-CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHH
Confidence 3445555555554443332 222222 4567889999999999999999998875 555555555432110
Q ss_pred ---------ccch-----hHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcE
Q 011393 289 ---------WVGE-----GEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLV 354 (487)
Q Consensus 289 ---------~~g~-----~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 354 (487)
+.+. .-...+..++.++.....||++|=+-++- ....+..++...-+-+ +|...+
T Consensus 149 ~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~---------ide~Lm~El~~Ik~~~--~P~E~l 217 (451)
T COG0541 149 QLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLH---------IDEELMDELKEIKEVI--NPDETL 217 (451)
T ss_pred HHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccc---------ccHHHHHHHHHHHhhc--CCCeEE
Confidence 1111 23355777788888878899999886551 2233334433322222 344445
Q ss_pred EEEEecCCCCCC--CHHHHcccc-cEEEccCCCHHHHHH--HHHHHhccCCC----------CCChhhHHHHHHHcCCCC
Q 011393 355 IVMGATNKPQEL--DDAVLRRLV-KRIYVPLPDENVRRL--LLKHKLKGQAF----------SLPGGDLERLVRETEGYS 419 (487)
Q Consensus 355 ivI~ttn~~~~l--d~al~~Rf~-~~i~i~~Pd~~~r~~--il~~~l~~~~~----------~l~~~~l~~La~~t~G~s 419 (487)
+|+-++--.+.. -.+|-.+.. .-+-+.-.|-+.|-- +=-.+.-+.++ .+....-++++.+.=|.
T Consensus 218 lVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGM- 296 (451)
T COG0541 218 LVVDAMIGQDAVNTAKAFNEALGITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGM- 296 (451)
T ss_pred EEEecccchHHHHHHHHHhhhcCCceEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCc-
Confidence 566554333322 223333332 123444445444422 21122222222 23445677888888774
Q ss_pred HHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhC
Q 011393 420 GSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 420 ~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ 466 (487)
+|+..|++.|...--.+-... .......-..|.+||.+.+..++
T Consensus 297 -GDv~sLvEk~~~~~d~e~a~~--~~~kl~~g~FtL~Df~~Ql~~m~ 340 (451)
T COG0541 297 -GDVLSLIEKAEEVVDEEEAEK--LAEKLKKGKFTLEDFLEQLEQMK 340 (451)
T ss_pred -ccHHHHHHHHHHhhhHHHHHH--HHHHHHhCCCCHHHHHHHHHHHH
Confidence 899999998865442211110 00001112378899988876654
No 495
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.58 E-value=0.0041 Score=63.57 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=43.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC------CeEEEEec-Cccchh-------c-----cchhHHHHHHHHHHHHhcCC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQ------ATFFNVSA-SSLTSK-------W-----VGEGEKLVRTLFMVAISRQP 309 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~------~~~~~v~~-~~l~~~-------~-----~g~~~~~i~~~f~~a~~~~p 309 (487)
...|+++||+|+||||++++++.+.. ..++.+.- .++.-. . ++.........+..+....|
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~P 213 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKP 213 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCC
Confidence 45699999999999999999998752 23332211 111100 0 11111234455556777899
Q ss_pred cEEEechhh
Q 011393 310 CVIFIDEID 318 (487)
Q Consensus 310 ~Il~IDEiD 318 (487)
.+|++.|+-
T Consensus 214 d~i~vGEiR 222 (358)
T TIGR02524 214 HAILVGEAR 222 (358)
T ss_pred CEEeeeeeC
Confidence 999999973
No 496
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.58 E-value=0.0024 Score=58.33 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=24.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.++..|+|.|++|+|||++++.++..+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999875
No 497
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.57 E-value=0.006 Score=62.03 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
...+|+||||||||+|++.+++.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 467999999999999999998875
No 498
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.57 E-value=0.0026 Score=59.38 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=25.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATF 277 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~ 277 (487)
+.-+++.|+||+|||++|+.+|.+++..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 34689999999999999999999988755
No 499
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.57 E-value=0.004 Score=57.59 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=25.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 252 LLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
|.|+|++|+|||++++.++...+++++..
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~ 30 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDA 30 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 68999999999999999999876776544
No 500
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.56 E-value=0.0023 Score=59.10 Aligned_cols=30 Identities=30% Similarity=0.538 Sum_probs=25.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
..++|.||+|+|||||++.++...+..++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 468899999999999999999988765543
Done!