Query 011393
Match_columns 487
No_of_seqs 441 out of 3063
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 07:13:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zan_A Vacuolar protein sortin 100.0 1.3E-58 4.4E-63 484.3 26.3 398 52-487 6-443 (444)
2 4b4t_J 26S protease regulatory 100.0 9.6E-50 3.3E-54 404.9 25.4 260 202-475 134-399 (405)
3 4b4t_H 26S protease regulatory 100.0 7.1E-48 2.4E-52 395.6 25.1 262 206-481 199-467 (467)
4 4b4t_I 26S protease regulatory 100.0 1.3E-48 4.4E-53 397.4 19.3 256 205-474 171-432 (437)
5 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.7E-46 5.8E-51 376.8 33.2 281 206-487 2-321 (322)
6 4b4t_M 26S protease regulatory 100.0 2.4E-47 8.1E-52 392.9 25.8 253 205-471 170-428 (434)
7 4b4t_L 26S protease subunit RP 100.0 2.3E-47 8E-52 393.3 23.9 259 203-475 168-432 (437)
8 2qp9_X Vacuolar protein sortin 100.0 7.1E-46 2.4E-50 377.2 28.9 293 194-487 29-353 (355)
9 3cf2_A TER ATPase, transitiona 100.0 2.2E-48 7.6E-53 426.7 9.8 277 207-486 468-764 (806)
10 3eie_A Vacuolar protein sortin 100.0 9.8E-46 3.4E-50 371.4 27.5 283 204-487 6-320 (322)
11 4b4t_K 26S protease regulatory 100.0 3.5E-46 1.2E-50 384.0 24.6 255 205-473 161-423 (428)
12 3d8b_A Fidgetin-like protein 1 100.0 3.5E-43 1.2E-47 357.7 30.0 302 186-487 54-356 (357)
13 3vfd_A Spastin; ATPase, microt 100.0 5.3E-42 1.8E-46 353.1 27.4 295 192-486 91-386 (389)
14 3b9p_A CG5977-PA, isoform A; A 100.0 7.1E-42 2.4E-46 338.9 26.2 290 197-486 2-293 (297)
15 3cf0_A Transitional endoplasmi 100.0 4E-41 1.4E-45 334.7 24.3 278 205-485 4-301 (301)
16 3cf2_A TER ATPase, transitiona 100.0 1.9E-41 6.4E-46 372.0 19.0 259 209-470 197-464 (806)
17 2x8a_A Nuclear valosin-contain 100.0 1.3E-38 4.5E-43 312.1 23.0 263 210-474 4-273 (274)
18 3hu3_A Transitional endoplasmi 100.0 5.2E-36 1.8E-40 315.5 19.7 273 211-486 199-482 (489)
19 3h4m_A Proteasome-activating n 100.0 1E-34 3.4E-39 285.6 27.3 267 207-487 8-282 (285)
20 1lv7_A FTSH; alpha/beta domain 100.0 5.3E-33 1.8E-37 269.5 27.9 247 206-467 2-254 (257)
21 2ce7_A Cell division protein F 100.0 3E-33 1E-37 292.3 26.4 243 210-467 10-258 (476)
22 1ypw_A Transitional endoplasmi 100.0 7.3E-37 2.5E-41 340.6 -2.1 276 207-485 468-763 (806)
23 2qz4_A Paraplegin; AAA+, SPG7, 100.0 6.3E-33 2.2E-37 269.0 19.6 244 211-468 1-252 (262)
24 1ixz_A ATP-dependent metallopr 100.0 9.5E-31 3.3E-35 253.2 24.5 242 206-462 6-253 (254)
25 2dhr_A FTSH; AAA+ protein, hex 100.0 3E-31 1E-35 278.8 21.4 244 210-468 25-274 (499)
26 2r62_A Cell division protease 100.0 8.5E-33 2.9E-37 269.5 2.3 252 208-473 3-261 (268)
27 1iy2_A ATP-dependent metallopr 100.0 3E-29 1E-33 246.1 27.0 242 206-462 30-277 (278)
28 1ypw_A Transitional endoplasmi 100.0 6.1E-28 2.1E-32 268.8 22.6 259 209-470 197-464 (806)
29 3t15_A Ribulose bisphosphate c 99.9 7E-26 2.4E-30 223.9 11.6 173 246-425 33-222 (293)
30 3syl_A Protein CBBX; photosynt 99.9 1.4E-24 4.7E-29 215.5 13.9 235 216-460 31-289 (309)
31 3uk6_A RUVB-like 2; hexameric 99.9 2.4E-23 8.2E-28 211.7 20.7 224 208-465 35-330 (368)
32 3pfi_A Holliday junction ATP-d 99.9 4.1E-22 1.4E-26 200.4 24.1 225 205-467 18-256 (338)
33 2c9o_A RUVB-like 1; hexameric 99.9 2.1E-22 7.2E-27 211.1 20.1 247 211-484 32-454 (456)
34 1hqc_A RUVB; extended AAA-ATPa 99.9 3.8E-21 1.3E-25 191.9 22.8 222 208-466 4-239 (324)
35 1ofh_A ATP-dependent HSL prote 99.9 5.5E-22 1.9E-26 196.4 15.7 246 216-466 15-300 (310)
36 2chg_A Replication factor C sm 99.9 1.7E-20 5.9E-25 175.4 21.2 208 205-463 6-224 (226)
37 3pvs_A Replication-associated 99.9 7.3E-21 2.5E-25 198.2 20.1 221 204-471 14-250 (447)
38 3m6a_A ATP-dependent protease 99.8 2E-21 6.8E-26 207.6 12.2 234 213-466 78-342 (543)
39 3hws_A ATP-dependent CLP prote 99.8 4.7E-21 1.6E-25 194.9 13.4 223 217-439 16-327 (363)
40 1njg_A DNA polymerase III subu 99.8 1.7E-20 5.8E-25 177.6 15.7 209 205-462 12-248 (250)
41 1g41_A Heat shock protein HSLU 99.8 8.5E-20 2.9E-24 188.2 22.0 254 216-477 15-442 (444)
42 3u61_B DNA polymerase accessor 99.8 2E-20 6.9E-25 187.0 16.8 193 205-431 15-220 (324)
43 1sxj_A Activator 1 95 kDa subu 99.8 1.8E-20 6E-25 199.4 16.1 211 205-430 28-255 (516)
44 1d2n_A N-ethylmaleimide-sensit 99.8 5.6E-20 1.9E-24 179.3 16.7 228 215-467 32-266 (272)
45 1sxj_D Activator 1 41 kDa subu 99.8 8.8E-20 3E-24 183.9 18.0 218 205-463 26-261 (353)
46 2z4s_A Chromosomal replication 99.8 1.1E-19 3.8E-24 189.3 19.0 222 211-467 100-334 (440)
47 2chq_A Replication factor C sm 99.8 5.3E-20 1.8E-24 182.7 15.8 197 205-432 6-209 (319)
48 1l8q_A Chromosomal replication 99.8 4.8E-19 1.6E-23 177.1 21.0 198 211-433 6-214 (324)
49 1iqp_A RFCS; clamp loader, ext 99.8 2.8E-19 9.6E-24 178.1 19.0 199 203-432 12-217 (327)
50 3pxg_A Negative regulator of g 99.8 8E-20 2.7E-24 191.9 15.4 196 202-434 166-385 (468)
51 3bos_A Putative DNA replicatio 99.8 6.1E-19 2.1E-23 167.5 19.9 212 206-463 17-241 (242)
52 1in4_A RUVB, holliday junction 99.8 1.1E-17 3.8E-22 168.1 29.1 242 205-484 14-272 (334)
53 1sxj_B Activator 1 37 kDa subu 99.8 6.8E-19 2.3E-23 174.9 19.2 192 205-431 10-213 (323)
54 2v1u_A Cell division control p 99.8 6E-19 2.1E-23 179.6 19.1 224 214-465 17-276 (387)
55 1jr3_A DNA polymerase III subu 99.8 2.7E-19 9.3E-24 181.7 16.1 195 205-433 5-227 (373)
56 1um8_A ATP-dependent CLP prote 99.8 9.7E-19 3.3E-23 178.6 19.1 241 217-462 22-362 (376)
57 1r6b_X CLPA protein; AAA+, N-t 99.8 1.3E-18 4.6E-23 193.3 20.9 234 205-466 175-434 (758)
58 4fcw_A Chaperone protein CLPB; 99.8 6E-19 2E-23 174.9 15.0 208 216-437 17-281 (311)
59 1g8p_A Magnesium-chelatase 38 99.8 2.2E-18 7.6E-23 173.6 19.3 220 210-465 18-322 (350)
60 1jbk_A CLPB protein; beta barr 99.8 2.6E-19 8.7E-24 163.4 10.5 168 203-392 9-194 (195)
61 1sxj_E Activator 1 40 kDa subu 99.8 1.3E-18 4.4E-23 175.8 16.0 198 205-434 3-244 (354)
62 2r44_A Uncharacterized protein 99.8 2.9E-18 1E-22 171.8 17.0 223 205-465 16-297 (331)
63 2qby_B CDC6 homolog 3, cell di 99.8 2.6E-18 8.8E-23 175.2 16.5 213 216-466 20-271 (384)
64 1fnn_A CDC6P, cell division co 99.8 7E-17 2.4E-21 164.6 26.0 232 215-476 16-285 (389)
65 3pxi_A Negative regulator of g 99.8 3.2E-18 1.1E-22 190.2 17.2 197 201-434 165-385 (758)
66 1qvr_A CLPB protein; coiled co 99.8 1.9E-18 6.5E-23 194.2 14.6 212 201-434 155-392 (854)
67 1sxj_C Activator 1 40 kDa subu 99.8 5.9E-18 2E-22 170.4 16.5 191 205-430 14-215 (340)
68 3pxi_A Negative regulator of g 99.8 7.9E-18 2.7E-22 187.0 16.7 204 216-437 491-727 (758)
69 2qby_A CDC6 homolog 1, cell di 99.7 8.5E-17 2.9E-21 163.4 21.6 223 213-465 17-272 (386)
70 1r6b_X CLPA protein; AAA+, N-t 99.7 1.8E-17 6.2E-22 184.2 16.1 205 217-437 459-718 (758)
71 2p65_A Hypothetical protein PF 99.7 6.7E-18 2.3E-22 153.6 9.6 159 205-384 11-187 (187)
72 2bjv_A PSP operon transcriptio 99.7 1.8E-16 6.1E-21 153.7 16.6 198 213-434 3-240 (265)
73 1qvr_A CLPB protein; coiled co 99.7 1E-16 3.5E-21 180.2 14.8 207 215-437 557-822 (854)
74 3te6_A Regulatory protein SIR3 99.7 5.3E-16 1.8E-20 153.7 15.9 198 218-438 22-290 (318)
75 1ojl_A Transcriptional regulat 99.7 4.6E-16 1.6E-20 154.2 14.1 194 216-434 2-235 (304)
76 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 6.2E-16 2.1E-20 162.6 15.4 195 216-437 22-269 (500)
77 3f9v_A Minichromosome maintena 99.6 2.5E-16 8.6E-21 169.6 7.5 224 216-466 295-588 (595)
78 1a5t_A Delta prime, HOLB; zinc 99.6 1.1E-14 3.9E-19 146.1 16.2 172 221-428 7-206 (334)
79 3n70_A Transport activator; si 99.6 1.1E-14 3.8E-19 128.1 10.0 131 217-382 2-143 (145)
80 3k1j_A LON protease, ATP-depen 99.5 4.6E-14 1.6E-18 152.7 16.3 221 208-464 33-374 (604)
81 2dl1_A Spartin; SPG20, MIT, st 99.5 1.5E-13 5E-18 112.7 13.8 88 46-133 11-99 (116)
82 3eab_A Spastin; spastin, MIT, 99.5 3.3E-14 1.1E-18 111.0 9.2 82 46-129 5-89 (89)
83 3co5_A Putative two-component 99.5 4.2E-15 1.4E-19 130.6 3.7 131 217-382 5-141 (143)
84 1w5s_A Origin recognition comp 99.5 4.5E-13 1.6E-17 137.4 18.2 211 214-436 20-275 (412)
85 2gno_A DNA polymerase III, gam 99.5 2.8E-13 9.5E-18 134.0 13.3 142 220-396 1-152 (305)
86 2w2u_A Hypothetical P60 katani 99.5 1.2E-13 3.9E-18 108.7 8.1 70 51-120 13-82 (83)
87 2v6y_A AAA family ATPase, P60 99.4 1.9E-13 6.6E-18 107.7 7.3 68 53-120 7-74 (83)
88 1wfd_A Hypothetical protein 15 99.4 5.7E-13 1.9E-17 107.4 7.9 74 51-124 9-82 (93)
89 4a5x_A MITD1, MIT domain-conta 99.4 5.7E-13 2E-17 105.5 6.9 69 55-123 14-82 (86)
90 3cmw_A Protein RECA, recombina 99.4 6.1E-13 2.1E-17 155.5 10.0 149 210-360 1014-1216(1706)
91 2v6x_A Vacuolar protein sortin 99.3 2.4E-12 8.2E-17 102.3 7.6 72 52-123 8-79 (85)
92 3vlf_B 26S protease regulatory 99.3 3.5E-12 1.2E-16 102.1 8.0 86 384-481 2-88 (88)
93 1ny5_A Transcriptional regulat 99.3 1.2E-11 4.1E-16 126.4 13.1 195 215-434 136-370 (387)
94 2cpt_A SKD1 protein, vacuolar 99.3 6E-12 2E-16 105.5 7.8 69 53-121 14-83 (117)
95 4akg_A Glutathione S-transfera 99.2 4.1E-11 1.4E-15 145.9 16.0 140 249-398 1267-1433(2695)
96 3aji_B S6C, proteasome (prosom 99.2 1E-11 3.5E-16 98.3 7.2 81 384-477 2-82 (83)
97 3ec2_A DNA replication protein 99.2 2.7E-11 9.2E-16 110.0 10.5 102 208-320 2-112 (180)
98 2qen_A Walker-type ATPase; unk 99.2 4.9E-10 1.7E-14 111.8 20.2 194 210-429 6-248 (350)
99 2krk_A 26S protease regulatory 99.2 2.1E-11 7.1E-16 97.0 6.7 77 380-468 8-84 (86)
100 3kw6_A 26S protease regulatory 99.2 4.7E-11 1.6E-15 93.3 8.0 75 381-467 1-75 (78)
101 3dzd_A Transcriptional regulat 99.1 6.7E-10 2.3E-14 112.7 16.1 195 216-434 129-361 (368)
102 2fna_A Conserved hypothetical 99.1 6.1E-09 2.1E-13 104.0 21.2 189 210-429 7-252 (357)
103 3f8t_A Predicted ATPase involv 99.1 6.9E-10 2.3E-14 113.9 12.5 215 218-466 215-484 (506)
104 2ymb_A MITD1, MIT domain-conta 99.0 2.3E-11 7.9E-16 114.8 0.0 72 53-124 19-90 (257)
105 2kjq_A DNAA-related protein; s 99.0 5.7E-10 1.9E-14 98.4 9.0 108 248-382 35-147 (149)
106 2w58_A DNAI, primosome compone 98.9 1.2E-09 4.1E-14 100.8 7.1 103 208-320 17-127 (202)
107 2dzn_B 26S protease regulatory 98.9 2.4E-10 8.1E-15 90.1 1.9 80 386-477 1-81 (82)
108 1jr3_D DNA polymerase III, del 98.9 2.4E-08 8.2E-13 100.0 14.2 160 248-432 17-190 (343)
109 2r2a_A Uncharacterized protein 98.8 3E-09 1E-13 98.3 6.6 127 250-386 6-156 (199)
110 2vhj_A Ntpase P4, P4; non- hyd 98.8 2E-09 6.7E-14 105.9 4.0 117 249-370 123-242 (331)
111 4akg_A Glutathione S-transfera 98.7 4.1E-07 1.4E-11 111.2 20.4 164 249-431 645-837 (2695)
112 2qgz_A Helicase loader, putati 98.7 7.8E-09 2.7E-13 102.2 4.2 99 211-320 119-226 (308)
113 1tue_A Replication protein E1; 98.7 1.2E-07 4.2E-12 87.1 10.9 109 249-382 58-178 (212)
114 3vkg_A Dynein heavy chain, cyt 98.6 6.1E-07 2.1E-11 110.5 16.9 139 249-397 1304-1470(3245)
115 1u0j_A DNA replication protein 98.4 2.9E-07 9.9E-12 88.3 7.2 27 249-275 104-130 (267)
116 3cmu_A Protein RECA, recombina 98.4 4.2E-07 1.4E-11 108.0 9.7 112 247-360 1425-1561(2050)
117 1ye8_A Protein THEP1, hypothet 98.3 3.2E-06 1.1E-10 76.5 11.4 27 251-277 2-28 (178)
118 3vkg_A Dynein heavy chain, cyt 98.2 5.9E-06 2E-10 101.9 13.6 128 250-393 605-750 (3245)
119 1z6t_A APAF-1, apoptotic prote 98.2 2.9E-05 1E-09 83.2 16.7 177 212-428 120-329 (591)
120 1svm_A Large T antigen; AAA+ f 98.1 8.2E-07 2.8E-11 89.9 3.4 106 246-372 166-272 (377)
121 3upu_A ATP-dependent DNA helic 98.1 4.4E-06 1.5E-10 87.0 8.9 67 204-283 12-83 (459)
122 3sfz_A APAF-1, apoptotic pepti 97.9 0.00012 4.2E-09 84.8 17.2 179 211-427 119-328 (1249)
123 3hr8_A Protein RECA; alpha and 97.8 5.9E-05 2E-09 75.5 10.0 76 247-322 59-153 (356)
124 1n0w_A DNA repair protein RAD5 97.8 3.9E-05 1.3E-09 72.0 7.9 77 247-323 22-134 (243)
125 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.00018 6.1E-09 66.8 12.2 35 248-282 22-59 (235)
126 2a5y_B CED-4; apoptosis; HET: 97.8 0.00059 2E-08 72.5 17.7 170 219-426 131-336 (549)
127 1xp8_A RECA protein, recombina 97.8 8.5E-05 2.9E-09 74.8 10.0 76 247-322 72-166 (366)
128 2zr9_A Protein RECA, recombina 97.7 4.2E-05 1.4E-09 76.7 7.3 76 247-322 59-153 (349)
129 2z43_A DNA repair and recombin 97.7 5.6E-05 1.9E-09 74.9 8.2 77 247-323 105-218 (324)
130 2cvh_A DNA repair and recombin 97.7 0.00017 5.9E-09 66.4 10.5 38 247-284 18-55 (220)
131 1qhx_A CPT, protein (chloramph 97.7 7.7E-05 2.6E-09 66.6 7.6 34 250-283 4-37 (178)
132 1v5w_A DMC1, meiotic recombina 97.7 0.0001 3.6E-09 73.6 9.1 77 247-323 120-234 (343)
133 3kl4_A SRP54, signal recogniti 97.7 0.00022 7.5E-09 73.2 11.4 205 248-466 96-341 (433)
134 2orw_A Thymidine kinase; TMTK, 97.6 5.7E-05 1.9E-09 68.5 6.1 32 250-281 4-38 (184)
135 2ehv_A Hypothetical protein PH 97.6 0.00035 1.2E-08 65.6 11.6 24 247-270 28-51 (251)
136 1u94_A RECA protein, recombina 97.6 9.8E-05 3.3E-09 74.1 8.1 75 248-322 62-155 (356)
137 3cmu_A Protein RECA, recombina 97.6 0.00015 5.1E-09 86.5 10.1 78 246-323 1078-1174(2050)
138 3trf_A Shikimate kinase, SK; a 97.6 4.2E-05 1.4E-09 68.9 3.9 33 249-281 5-37 (185)
139 2iut_A DNA translocase FTSK; n 97.5 0.0019 6.5E-08 68.2 16.3 74 310-393 345-420 (574)
140 2r8r_A Sensor protein; KDPD, P 97.5 0.0024 8.2E-08 59.5 14.7 161 250-434 7-208 (228)
141 4a74_A DNA repair and recombin 97.5 0.00021 7E-09 66.3 7.6 38 247-284 23-69 (231)
142 3vaa_A Shikimate kinase, SK; s 97.5 6.6E-05 2.3E-09 68.7 4.1 34 248-281 24-57 (199)
143 2b8t_A Thymidine kinase; deoxy 97.4 0.00043 1.5E-08 64.7 9.3 72 248-320 11-101 (223)
144 3e1s_A Exodeoxyribonuclease V, 97.4 0.00016 5.5E-09 77.2 7.2 97 250-362 205-317 (574)
145 3lda_A DNA repair protein RAD5 97.4 0.00028 9.5E-09 71.9 8.6 77 247-323 176-288 (400)
146 1vma_A Cell division protein F 97.4 0.0021 7E-08 63.0 14.4 72 247-318 102-196 (306)
147 2ius_A DNA translocase FTSK; n 97.4 0.0016 5.4E-08 68.2 14.0 76 309-394 297-375 (512)
148 3io5_A Recombination and repai 97.4 0.00031 1.1E-08 68.8 7.9 72 251-322 30-125 (333)
149 2dr3_A UPF0273 protein PH0284; 97.4 0.0011 3.9E-08 61.9 11.7 37 247-283 21-60 (247)
150 3dm5_A SRP54, signal recogniti 97.4 0.0016 5.4E-08 66.9 13.4 204 248-466 99-341 (443)
151 1gvn_B Zeta; postsegregational 97.4 0.00043 1.5E-08 67.3 8.7 38 248-285 32-69 (287)
152 3iij_A Coilin-interacting nucl 97.4 0.00011 3.8E-09 65.8 4.2 32 249-280 11-42 (180)
153 3kb2_A SPBC2 prophage-derived 97.3 0.00012 4E-09 64.7 4.1 31 251-281 3-33 (173)
154 1pzn_A RAD51, DNA repair and r 97.3 0.00041 1.4E-08 69.4 8.3 38 247-284 129-175 (349)
155 1via_A Shikimate kinase; struc 97.3 0.00016 5.4E-09 64.5 4.6 29 251-279 6-34 (175)
156 2i1q_A DNA repair and recombin 97.3 0.00027 9.3E-09 69.7 6.6 77 247-323 96-219 (322)
157 2iyv_A Shikimate kinase, SK; t 97.3 0.00012 4.2E-09 65.7 3.7 32 250-281 3-34 (184)
158 2fz4_A DNA repair protein RAD2 97.3 0.00074 2.5E-08 63.6 9.3 33 251-283 110-142 (237)
159 1y63_A LMAJ004144AAA protein; 97.3 0.00013 4.5E-09 65.8 3.8 33 249-281 10-43 (184)
160 1kag_A SKI, shikimate kinase I 97.3 0.00019 6.6E-09 63.6 4.9 30 250-279 5-34 (173)
161 1zuh_A Shikimate kinase; alpha 97.3 0.00014 4.9E-09 64.3 3.8 32 249-280 7-38 (168)
162 2p5t_B PEZT; postsegregational 97.3 0.00037 1.3E-08 66.3 6.9 39 247-285 30-68 (253)
163 2cdn_A Adenylate kinase; phosp 97.2 0.0002 6.7E-09 65.4 4.3 32 249-280 20-51 (201)
164 2rhm_A Putative kinase; P-loop 97.2 0.00021 7.1E-09 64.5 4.4 31 249-279 5-35 (193)
165 1g5t_A COB(I)alamin adenosyltr 97.2 0.0013 4.5E-08 59.9 9.6 117 250-381 29-178 (196)
166 1e6c_A Shikimate kinase; phosp 97.2 0.0002 6.8E-09 63.4 3.9 31 250-280 3-33 (173)
167 1aky_A Adenylate kinase; ATP:A 97.2 0.00027 9.2E-09 65.5 5.0 33 248-280 3-35 (220)
168 2c95_A Adenylate kinase 1; tra 97.2 0.00019 6.7E-09 64.8 4.0 33 249-281 9-41 (196)
169 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00061 2.1E-08 65.1 7.6 37 249-285 4-43 (260)
170 2ze6_A Isopentenyl transferase 97.2 0.00021 7.2E-09 68.1 4.2 32 251-282 3-34 (253)
171 1tev_A UMP-CMP kinase; ploop, 97.2 0.00021 7E-09 64.5 3.8 31 249-279 3-33 (196)
172 3lw7_A Adenylate kinase relate 97.2 0.0002 6.9E-09 63.1 3.6 29 251-280 3-31 (179)
173 3t61_A Gluconokinase; PSI-biol 97.1 0.00029 9.8E-09 64.4 4.4 31 249-279 18-48 (202)
174 3cm0_A Adenylate kinase; ATP-b 97.1 0.00027 9.3E-09 63.4 4.0 30 250-279 5-34 (186)
175 1zp6_A Hypothetical protein AT 97.1 0.00025 8.6E-09 63.9 3.6 38 248-285 8-45 (191)
176 2i3b_A HCR-ntpase, human cance 97.1 0.0015 5.1E-08 59.4 8.7 23 251-273 3-25 (189)
177 3jvv_A Twitching mobility prot 97.1 0.00062 2.1E-08 68.2 6.7 69 249-317 123-205 (356)
178 2eyu_A Twitching motility prot 97.1 0.0008 2.7E-08 64.4 7.2 70 248-317 24-107 (261)
179 1nlf_A Regulatory protein REPA 97.1 0.0025 8.6E-08 61.3 10.8 25 248-272 29-53 (279)
180 2bwj_A Adenylate kinase 5; pho 97.1 0.00027 9.3E-09 64.0 3.7 32 249-280 12-43 (199)
181 1zd8_A GTP:AMP phosphotransfer 97.1 0.00028 9.5E-09 65.8 3.8 32 249-280 7-38 (227)
182 2vli_A Antibiotic resistance p 97.1 0.00026 8.8E-09 63.3 3.4 30 249-278 5-34 (183)
183 1ly1_A Polynucleotide kinase; 97.1 0.00028 9.4E-09 62.8 3.5 29 250-278 3-32 (181)
184 3dl0_A Adenylate kinase; phosp 97.1 0.00027 9.3E-09 65.2 3.6 30 251-280 2-31 (216)
185 3tlx_A Adenylate kinase 2; str 97.1 0.00031 1.1E-08 66.4 4.1 33 248-280 28-60 (243)
186 1knq_A Gluconate kinase; ALFA/ 97.1 0.00044 1.5E-08 61.5 4.7 31 249-279 8-38 (175)
187 1ak2_A Adenylate kinase isoenz 97.1 0.00046 1.6E-08 64.6 5.1 32 249-280 16-47 (233)
188 1ukz_A Uridylate kinase; trans 97.1 0.00035 1.2E-08 63.7 4.1 33 249-281 15-47 (203)
189 2pt5_A Shikimate kinase, SK; a 97.1 0.00033 1.1E-08 61.7 3.8 30 251-280 2-31 (168)
190 1kht_A Adenylate kinase; phosp 97.1 0.00036 1.2E-08 62.6 4.1 25 250-274 4-28 (192)
191 2zts_A Putative uncharacterize 97.0 0.0031 1.1E-07 58.9 10.8 37 247-283 28-68 (251)
192 3fb4_A Adenylate kinase; psych 97.0 0.00029 1E-08 64.9 3.5 30 251-280 2-31 (216)
193 1qf9_A UMP/CMP kinase, protein 97.0 0.0003 1E-08 63.2 3.5 31 250-280 7-37 (194)
194 4eun_A Thermoresistant glucoki 97.0 0.00052 1.8E-08 62.6 5.0 32 248-279 28-59 (200)
195 3umf_A Adenylate kinase; rossm 97.0 0.00048 1.7E-08 64.0 4.7 38 247-286 27-64 (217)
196 3crm_A TRNA delta(2)-isopenten 97.0 0.0016 5.3E-08 64.2 8.3 33 250-282 6-38 (323)
197 3be4_A Adenylate kinase; malar 97.0 0.00044 1.5E-08 64.1 4.0 31 250-280 6-36 (217)
198 1vt4_I APAF-1 related killer D 97.0 0.012 4.1E-07 66.3 15.9 43 219-272 131-173 (1221)
199 3sr0_A Adenylate kinase; phosp 97.0 0.00054 1.8E-08 63.2 4.4 29 251-279 2-30 (206)
200 1zak_A Adenylate kinase; ATP:A 96.9 0.0005 1.7E-08 63.8 3.9 31 249-279 5-35 (222)
201 2pez_A Bifunctional 3'-phospho 96.9 0.00086 2.9E-08 59.9 5.1 36 248-283 4-42 (179)
202 2bbw_A Adenylate kinase 4, AK4 96.9 0.00068 2.3E-08 64.0 4.5 31 248-278 26-56 (246)
203 3b6e_A Interferon-induced heli 96.9 0.0076 2.6E-07 54.8 11.5 23 250-272 49-71 (216)
204 2r6a_A DNAB helicase, replicat 96.9 0.0022 7.5E-08 66.4 8.6 37 247-283 201-241 (454)
205 4gp7_A Metallophosphoesterase; 96.8 0.0036 1.2E-07 55.6 8.7 20 249-268 9-28 (171)
206 2pbr_A DTMP kinase, thymidylat 96.8 0.00088 3E-08 60.2 4.7 31 251-281 2-35 (195)
207 1e4v_A Adenylate kinase; trans 96.8 0.00078 2.7E-08 62.1 4.3 30 251-280 2-31 (214)
208 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00045 1.5E-08 68.8 2.7 30 250-279 25-54 (359)
209 2gxq_A Heat resistant RNA depe 96.8 0.0057 1.9E-07 55.5 10.0 19 250-268 39-57 (207)
210 3uie_A Adenylyl-sulfate kinase 96.8 0.00085 2.9E-08 61.2 4.4 37 247-283 23-62 (200)
211 1t6n_A Probable ATP-dependent 96.8 0.015 5.3E-07 53.2 13.0 59 213-272 14-74 (220)
212 2jaq_A Deoxyguanosine kinase; 96.8 0.00083 2.8E-08 60.9 4.2 29 251-279 2-30 (205)
213 2xb4_A Adenylate kinase; ATP-b 96.8 0.00091 3.1E-08 62.2 4.4 30 251-280 2-31 (223)
214 1cke_A CK, MSSA, protein (cyti 96.8 0.001 3.5E-08 61.6 4.8 30 250-279 6-35 (227)
215 3cmw_A Protein RECA, recombina 96.8 0.0021 7E-08 76.0 8.3 109 250-360 1432-1565(1706)
216 2v54_A DTMP kinase, thymidylat 96.8 0.001 3.5E-08 60.5 4.6 34 249-282 4-38 (204)
217 2px0_A Flagellar biosynthesis 96.7 0.0061 2.1E-07 59.3 10.2 61 222-283 79-143 (296)
218 2q6t_A DNAB replication FORK h 96.7 0.0036 1.2E-07 64.6 9.1 38 246-283 197-238 (444)
219 1nks_A Adenylate kinase; therm 96.7 0.00059 2E-08 61.3 2.7 24 251-274 3-26 (194)
220 2ewv_A Twitching motility prot 96.7 0.0015 5.2E-08 65.8 5.9 71 247-317 134-218 (372)
221 2if2_A Dephospho-COA kinase; a 96.7 0.00079 2.7E-08 61.4 3.3 30 251-281 3-32 (204)
222 2z0h_A DTMP kinase, thymidylat 96.7 0.0013 4.4E-08 59.3 4.7 31 252-282 3-36 (197)
223 3r20_A Cytidylate kinase; stru 96.7 0.0013 4.5E-08 61.7 4.8 31 249-279 9-39 (233)
224 3nwj_A ATSK2; P loop, shikimat 96.7 0.0014 4.7E-08 62.3 4.8 33 249-281 48-80 (250)
225 2grj_A Dephospho-COA kinase; T 96.6 0.0012 4E-08 60.2 3.6 32 250-281 13-44 (192)
226 1w36_D RECD, exodeoxyribonucle 96.6 0.003 1E-07 67.9 7.4 24 249-272 164-187 (608)
227 3ake_A Cytidylate kinase; CMP 96.6 0.0015 5.2E-08 59.4 4.3 31 251-281 4-34 (208)
228 1w4r_A Thymidine kinase; type 96.6 0.0062 2.1E-07 55.3 8.2 70 249-320 20-103 (195)
229 2plr_A DTMP kinase, probable t 96.5 0.0014 4.8E-08 59.8 3.9 27 250-276 5-31 (213)
230 3a8t_A Adenylate isopentenyltr 96.5 0.0012 4E-08 65.4 3.5 35 249-283 40-74 (339)
231 1m7g_A Adenylylsulfate kinase; 96.5 0.0038 1.3E-07 57.3 6.7 37 248-284 24-64 (211)
232 1uf9_A TT1252 protein; P-loop, 96.5 0.0013 4.4E-08 59.6 3.5 31 249-280 8-38 (203)
233 1jjv_A Dephospho-COA kinase; P 96.5 0.0014 4.9E-08 59.8 3.8 28 251-279 4-31 (206)
234 4e22_A Cytidylate kinase; P-lo 96.5 0.0024 8.2E-08 60.6 5.4 32 248-279 26-57 (252)
235 2wwf_A Thymidilate kinase, put 96.5 0.00065 2.2E-08 62.2 1.2 28 249-276 10-37 (212)
236 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0017 5.8E-08 64.3 4.2 70 249-318 171-250 (330)
237 3zvl_A Bifunctional polynucleo 96.5 0.0028 9.7E-08 64.8 6.0 32 248-279 257-288 (416)
238 2xau_A PRE-mRNA-splicing facto 96.4 0.0072 2.4E-07 66.8 9.4 61 211-272 70-132 (773)
239 1nn5_A Similar to deoxythymidy 96.4 0.00083 2.8E-08 61.5 1.6 26 249-274 9-34 (215)
240 2qor_A Guanylate kinase; phosp 96.4 0.002 6.9E-08 58.8 3.9 28 247-274 10-37 (204)
241 3foz_A TRNA delta(2)-isopenten 96.4 0.0026 8.9E-08 62.1 4.8 34 249-282 10-43 (316)
242 1qde_A EIF4A, translation init 96.4 0.022 7.6E-07 52.2 10.9 53 213-266 14-68 (224)
243 1q3t_A Cytidylate kinase; nucl 96.4 0.0031 1.1E-07 59.0 5.1 32 248-279 15-46 (236)
244 1uj2_A Uridine-cytidine kinase 96.3 0.003 1E-07 59.8 5.0 38 249-286 22-67 (252)
245 3bh0_A DNAB-like replicative h 96.3 0.0099 3.4E-07 58.3 8.9 37 247-283 66-105 (315)
246 2h92_A Cytidylate kinase; ross 96.3 0.0031 1.1E-07 58.0 4.9 31 250-280 4-34 (219)
247 1p9r_A General secretion pathw 96.3 0.013 4.4E-07 59.8 9.7 93 212-317 143-245 (418)
248 1vht_A Dephospho-COA kinase; s 96.3 0.0033 1.1E-07 57.9 4.6 30 250-280 5-34 (218)
249 1q57_A DNA primase/helicase; d 96.2 0.0092 3.1E-07 62.5 8.4 38 246-283 239-280 (503)
250 2bdt_A BH3686; alpha-beta prot 96.2 0.0031 1.1E-07 56.6 4.2 25 251-275 4-28 (189)
251 1ex7_A Guanylate kinase; subst 96.2 0.0031 1.1E-07 57.0 4.2 28 250-277 2-29 (186)
252 1sky_E F1-ATPase, F1-ATP synth 96.2 0.0064 2.2E-07 62.7 6.9 23 250-272 152-174 (473)
253 2qt1_A Nicotinamide riboside k 96.2 0.002 6.8E-08 58.9 2.8 34 247-280 19-53 (207)
254 1zu4_A FTSY; GTPase, signal re 96.2 0.024 8.1E-07 55.8 10.7 37 247-283 103-142 (320)
255 3tau_A Guanylate kinase, GMP k 96.2 0.003 1E-07 58.0 3.8 28 248-275 7-34 (208)
256 3d3q_A TRNA delta(2)-isopenten 96.1 0.003 1E-07 62.6 3.8 33 250-282 8-40 (340)
257 2f6r_A COA synthase, bifunctio 96.1 0.0028 9.5E-08 61.2 3.6 31 249-280 75-105 (281)
258 1kgd_A CASK, peripheral plasma 96.1 0.0035 1.2E-07 56.0 4.0 26 249-274 5-30 (180)
259 2yvu_A Probable adenylyl-sulfa 96.1 0.0034 1.2E-07 56.2 3.9 35 248-282 12-49 (186)
260 1ltq_A Polynucleotide kinase; 96.1 0.0033 1.1E-07 61.0 4.0 30 250-279 3-33 (301)
261 3exa_A TRNA delta(2)-isopenten 96.1 0.0031 1.1E-07 61.6 3.7 33 250-282 4-36 (322)
262 2j41_A Guanylate kinase; GMP, 96.1 0.0036 1.2E-07 56.8 3.9 26 248-273 5-30 (207)
263 4b3f_X DNA-binding protein smu 96.1 0.023 7.7E-07 61.5 10.7 51 220-284 190-243 (646)
264 2j37_W Signal recognition part 96.1 0.019 6.6E-07 59.9 9.7 35 248-282 100-137 (504)
265 3tr0_A Guanylate kinase, GMP k 96.0 0.0044 1.5E-07 56.2 4.1 26 249-274 7-32 (205)
266 3e70_C DPA, signal recognition 96.0 0.024 8.1E-07 56.0 9.7 27 247-273 127-153 (328)
267 3bgw_A DNAB-like replicative h 96.0 0.029 9.8E-07 57.8 10.6 37 247-283 195-234 (444)
268 2qmh_A HPR kinase/phosphorylas 96.0 0.0031 1.1E-07 57.5 2.9 33 248-281 33-65 (205)
269 3iuy_A Probable ATP-dependent 96.0 0.018 6.2E-07 53.1 8.3 20 249-268 57-76 (228)
270 2pl3_A Probable ATP-dependent 96.0 0.032 1.1E-06 51.7 10.0 56 212-267 24-80 (236)
271 1x6v_B Bifunctional 3'-phospho 96.0 0.011 3.7E-07 63.4 7.5 36 249-284 52-90 (630)
272 1tf7_A KAIC; homohexamer, hexa 96.0 0.029 9.9E-07 59.1 10.7 76 247-322 279-385 (525)
273 1vec_A ATP-dependent RNA helic 96.0 0.02 6.7E-07 51.8 8.3 19 250-268 41-59 (206)
274 1hv8_A Putative ATP-dependent 96.0 0.025 8.5E-07 55.7 9.7 70 213-282 6-82 (367)
275 3fdi_A Uncharacterized protein 96.0 0.0047 1.6E-07 56.5 4.0 30 250-279 7-36 (201)
276 2oxc_A Probable ATP-dependent 95.9 0.029 9.9E-07 51.9 9.3 55 213-267 24-79 (230)
277 3llm_A ATP-dependent RNA helic 95.9 0.022 7.6E-07 53.0 8.5 22 249-270 76-97 (235)
278 3eph_A TRNA isopentenyltransfe 95.9 0.0043 1.5E-07 62.7 3.7 33 249-281 2-34 (409)
279 2yhs_A FTSY, cell division pro 95.9 0.079 2.7E-06 55.0 13.2 27 247-273 291-317 (503)
280 3fe2_A Probable ATP-dependent 95.9 0.017 5.7E-07 54.1 7.6 19 250-268 67-85 (242)
281 3asz_A Uridine kinase; cytidin 95.9 0.0046 1.6E-07 56.5 3.6 27 248-274 5-31 (211)
282 1g41_A Heat shock protein HSLU 95.8 0.00074 2.5E-08 69.4 -2.1 76 310-392 109-188 (444)
283 2axn_A 6-phosphofructo-2-kinas 95.8 0.013 4.6E-07 61.6 7.3 36 249-284 35-73 (520)
284 3a00_A Guanylate kinase, GMP k 95.8 0.0054 1.9E-07 55.1 3.7 25 250-274 2-26 (186)
285 2oap_1 GSPE-2, type II secreti 95.8 0.0063 2.1E-07 63.9 4.6 69 249-317 260-342 (511)
286 1j8m_F SRP54, signal recogniti 95.7 0.031 1.1E-06 54.3 9.1 70 249-318 98-190 (297)
287 1lvg_A Guanylate kinase, GMP k 95.7 0.0053 1.8E-07 55.9 3.4 27 248-274 3-29 (198)
288 1xti_A Probable ATP-dependent 95.7 0.12 4E-06 51.4 13.7 59 213-272 8-68 (391)
289 1rz3_A Hypothetical protein rb 95.7 0.0094 3.2E-07 54.2 5.0 35 248-282 21-58 (201)
290 3ney_A 55 kDa erythrocyte memb 95.7 0.0089 3E-07 54.5 4.6 27 248-274 18-44 (197)
291 3c8u_A Fructokinase; YP_612366 95.7 0.0054 1.9E-07 56.1 3.2 28 247-274 20-47 (208)
292 1q0u_A Bstdead; DEAD protein, 95.6 0.058 2E-06 49.4 10.1 20 250-269 42-61 (219)
293 2xxa_A Signal recognition part 95.6 0.03 1E-06 57.4 8.7 71 247-317 98-192 (433)
294 1tf7_A KAIC; homohexamer, hexa 95.6 0.05 1.7E-06 57.2 10.6 23 247-269 37-59 (525)
295 1xx6_A Thymidine kinase; NESG, 95.5 0.034 1.2E-06 50.3 8.0 33 249-281 8-43 (191)
296 2xze_A STAM-binding protein; h 95.5 0.13 4.5E-06 44.2 11.1 77 50-126 33-115 (146)
297 2j9r_A Thymidine kinase; TK1, 95.5 0.019 6.4E-07 52.9 6.0 33 250-282 29-64 (214)
298 3p32_A Probable GTPase RV1496/ 95.5 0.072 2.5E-06 53.0 10.8 33 249-281 79-114 (355)
299 1ls1_A Signal recognition part 95.4 0.037 1.3E-06 53.7 8.4 72 248-319 97-191 (295)
300 3gmt_A Adenylate kinase; ssgci 95.4 0.01 3.5E-07 55.4 4.1 31 250-280 9-39 (230)
301 3ly5_A ATP-dependent RNA helic 95.4 0.031 1.1E-06 53.0 7.6 19 250-268 92-110 (262)
302 3ber_A Probable ATP-dependent 95.4 0.04 1.4E-06 51.8 8.2 56 213-268 43-99 (249)
303 3hdt_A Putative kinase; struct 95.4 0.01 3.4E-07 55.3 3.9 30 250-279 15-44 (223)
304 3tbk_A RIG-I helicase domain; 95.4 0.11 3.7E-06 54.2 12.4 34 250-283 20-61 (555)
305 1htw_A HI0065; nucleotide-bind 95.4 0.01 3.6E-07 52.0 3.8 27 247-273 31-57 (158)
306 1gtv_A TMK, thymidylate kinase 95.3 0.004 1.4E-07 56.9 1.0 25 251-275 2-26 (214)
307 1z6g_A Guanylate kinase; struc 95.3 0.0098 3.4E-07 55.0 3.7 27 247-273 21-47 (218)
308 1znw_A Guanylate kinase, GMP k 95.3 0.011 3.8E-07 54.0 4.0 27 248-274 19-45 (207)
309 3oiy_A Reverse gyrase helicase 95.3 0.059 2E-06 54.4 9.8 33 250-282 37-72 (414)
310 1rj9_A FTSY, signal recognitio 95.3 0.017 5.9E-07 56.3 5.3 26 248-273 101-126 (304)
311 1s96_A Guanylate kinase, GMP k 95.3 0.012 4.1E-07 54.6 4.0 28 247-274 14-41 (219)
312 3b9q_A Chloroplast SRP recepto 95.2 0.02 6.9E-07 55.8 5.8 27 247-273 98-124 (302)
313 3vkw_A Replicase large subunit 95.2 0.021 7.2E-07 58.5 6.0 25 248-272 160-184 (446)
314 4eaq_A DTMP kinase, thymidylat 95.2 0.012 4E-07 55.0 3.9 32 248-279 25-58 (229)
315 2ffh_A Protein (FFH); SRP54, s 95.2 0.081 2.8E-06 54.0 10.2 36 248-283 97-135 (425)
316 1s2m_A Putative ATP-dependent 95.2 0.063 2.2E-06 53.7 9.4 58 213-271 21-80 (400)
317 2v3c_C SRP54, signal recogniti 95.2 0.02 7E-07 58.7 5.8 36 248-283 98-136 (432)
318 3tqf_A HPR(Ser) kinase; transf 95.1 0.016 5.5E-07 51.5 4.2 30 248-278 15-44 (181)
319 3thx_B DNA mismatch repair pro 95.1 0.059 2E-06 60.3 9.7 23 249-271 673-695 (918)
320 3ice_A Transcription terminati 95.1 0.053 1.8E-06 54.5 8.2 26 248-273 173-198 (422)
321 1c9k_A COBU, adenosylcobinamid 95.1 0.013 4.4E-07 52.6 3.5 32 252-284 2-33 (180)
322 1odf_A YGR205W, hypothetical 3 95.0 0.03 1E-06 54.2 6.3 27 248-274 30-56 (290)
323 2jeo_A Uridine-cytidine kinase 95.0 0.014 4.8E-07 54.9 3.8 28 249-276 25-52 (245)
324 3pey_A ATP-dependent RNA helic 95.0 0.13 4.5E-06 50.9 11.2 22 249-270 44-65 (395)
325 3dkp_A Probable ATP-dependent 95.0 0.068 2.3E-06 49.7 8.4 18 250-267 67-84 (245)
326 2v9p_A Replication protein E1; 95.0 0.015 5.1E-07 56.8 3.8 31 247-277 124-154 (305)
327 2va8_A SSO2462, SKI2-type heli 94.9 0.093 3.2E-06 57.2 10.7 71 212-282 7-83 (715)
328 2fwr_A DNA repair protein RAD2 94.9 0.046 1.6E-06 56.3 7.8 34 250-283 109-142 (472)
329 2og2_A Putative signal recogni 94.9 0.028 9.5E-07 56.2 5.7 27 247-273 155-181 (359)
330 3thx_A DNA mismatch repair pro 94.9 0.11 3.7E-06 58.3 11.0 22 250-271 663-684 (934)
331 2gza_A Type IV secretion syste 94.8 0.021 7.2E-07 57.1 4.7 71 248-318 174-262 (361)
332 2j0s_A ATP-dependent RNA helic 94.8 0.12 4E-06 51.9 10.4 58 213-271 37-96 (410)
333 3lxw_A GTPase IMAP family memb 94.8 0.5 1.7E-05 44.1 14.0 24 249-272 21-44 (247)
334 1a7j_A Phosphoribulokinase; tr 94.8 0.012 4E-07 57.1 2.5 36 250-285 6-44 (290)
335 3lnc_A Guanylate kinase, GMP k 94.7 0.011 3.9E-07 54.8 2.3 27 248-274 26-53 (231)
336 2zj8_A DNA helicase, putative 94.7 0.11 3.9E-06 56.6 10.6 34 249-282 39-76 (720)
337 2qm8_A GTPase/ATPase; G protei 94.7 0.066 2.2E-06 52.9 7.9 26 248-273 54-79 (337)
338 2orv_A Thymidine kinase; TP4A 94.7 0.12 4E-06 48.1 9.0 69 249-320 19-102 (234)
339 1fuu_A Yeast initiation factor 94.7 0.13 4.3E-06 51.1 10.0 56 212-268 20-77 (394)
340 2ocp_A DGK, deoxyguanosine kin 94.6 0.024 8.3E-07 52.9 4.3 25 250-274 3-27 (241)
341 1cr0_A DNA primase/helicase; R 94.6 0.019 6.5E-07 55.5 3.6 36 247-282 33-72 (296)
342 2ged_A SR-beta, signal recogni 94.5 0.038 1.3E-06 49.1 5.3 26 248-273 47-72 (193)
343 1m8p_A Sulfate adenylyltransfe 94.5 0.024 8.2E-07 60.3 4.5 36 249-284 396-435 (573)
344 1sq5_A Pantothenate kinase; P- 94.5 0.022 7.4E-07 55.7 3.8 27 248-274 79-105 (308)
345 1p5z_B DCK, deoxycytidine kina 94.5 0.011 3.8E-07 56.1 1.6 27 248-274 23-49 (263)
346 1wp9_A ATP-dependent RNA helic 94.5 0.18 6E-06 51.2 10.8 33 251-283 25-61 (494)
347 3aez_A Pantothenate kinase; tr 94.4 0.023 7.9E-07 55.6 3.8 27 247-273 88-114 (312)
348 3q72_A GTP-binding protein RAD 94.4 0.058 2E-06 46.4 6.0 22 250-271 3-24 (166)
349 4i1u_A Dephospho-COA kinase; s 94.4 0.031 1.1E-06 51.4 4.3 33 248-281 8-40 (210)
350 1xjc_A MOBB protein homolog; s 94.3 0.028 9.6E-07 49.8 3.7 33 249-281 4-39 (169)
351 3tif_A Uncharacterized ABC tra 94.3 0.022 7.6E-07 53.3 3.2 28 247-274 29-56 (235)
352 3tqc_A Pantothenate kinase; bi 94.2 0.03 1E-06 55.0 4.1 26 249-274 92-117 (321)
353 2gk6_A Regulator of nonsense t 94.2 0.042 1.4E-06 59.1 5.6 23 250-272 196-218 (624)
354 2c9o_A RUVB-like 1; hexameric 94.2 0.0004 1.4E-08 72.1 -10.1 81 339-429 176-262 (456)
355 2cbz_A Multidrug resistance-as 94.1 0.025 8.5E-07 53.1 3.2 27 247-273 29-55 (237)
356 2p67_A LAO/AO transport system 94.1 0.12 4E-06 51.1 8.3 26 248-273 55-80 (341)
357 2i4i_A ATP-dependent RNA helic 94.1 0.18 6.2E-06 50.5 9.8 55 212-266 14-69 (417)
358 3fmp_B ATP-dependent RNA helic 94.1 0.17 5.8E-06 52.2 9.8 55 213-267 92-149 (479)
359 2pcj_A ABC transporter, lipopr 94.0 0.024 8.1E-07 52.7 2.8 28 247-274 28-55 (224)
360 2f7s_A C25KG, RAS-related prot 94.0 0.17 5.9E-06 45.8 8.6 23 250-272 26-48 (217)
361 2bov_A RAla, RAS-related prote 93.9 0.17 5.8E-06 45.2 8.3 24 249-272 14-37 (206)
362 2v6i_A RNA helicase; membrane, 93.9 0.093 3.2E-06 53.6 7.3 18 249-266 2-19 (431)
363 1b0u_A Histidine permease; ABC 93.9 0.029 9.9E-07 53.4 3.2 28 247-274 30-57 (262)
364 4a2p_A RIG-I, retinoic acid in 93.9 0.32 1.1E-05 50.7 11.6 34 250-283 23-64 (556)
365 2onk_A Molybdate/tungstate ABC 93.9 0.034 1.2E-06 52.2 3.6 24 250-273 25-48 (240)
366 1nrj_B SR-beta, signal recogni 93.8 0.04 1.4E-06 50.2 3.9 26 248-273 11-36 (218)
367 1np6_A Molybdopterin-guanine d 93.8 0.041 1.4E-06 49.0 3.9 25 249-273 6-30 (174)
368 2crb_A Nuclear receptor bindin 93.8 0.38 1.3E-05 37.4 8.6 48 55-102 13-60 (97)
369 2db3_A ATP-dependent RNA helic 93.8 0.29 9.8E-06 49.9 10.7 56 211-266 54-110 (434)
370 3tmk_A Thymidylate kinase; pho 93.8 0.061 2.1E-06 49.7 5.0 29 249-277 5-33 (216)
371 1sgw_A Putative ABC transporte 93.8 0.031 1.1E-06 51.6 3.0 27 248-274 34-60 (214)
372 2f9l_A RAB11B, member RAS onco 93.8 0.034 1.2E-06 49.9 3.3 23 250-272 6-28 (199)
373 1mv5_A LMRA, multidrug resista 93.8 0.031 1E-06 52.6 3.0 27 247-273 26-52 (243)
374 2zu0_C Probable ATP-dependent 93.7 0.039 1.3E-06 52.7 3.8 26 247-272 44-69 (267)
375 3b85_A Phosphate starvation-in 93.7 0.028 9.7E-07 51.6 2.7 24 249-272 22-45 (208)
376 2dyk_A GTP-binding protein; GT 93.7 0.038 1.3E-06 47.2 3.3 23 250-272 2-24 (161)
377 2ghi_A Transport protein; mult 93.6 0.034 1.2E-06 52.9 3.2 27 247-273 44-70 (260)
378 2olj_A Amino acid ABC transpor 93.6 0.035 1.2E-06 52.9 3.2 28 247-274 48-75 (263)
379 2d2e_A SUFC protein; ABC-ATPas 93.6 0.039 1.3E-06 52.1 3.6 26 247-272 27-52 (250)
380 2p6r_A Afuhel308 helicase; pro 93.6 0.055 1.9E-06 58.9 5.2 21 249-269 40-60 (702)
381 1oix_A RAS-related protein RAB 93.6 0.034 1.2E-06 49.7 3.0 23 251-273 31-53 (191)
382 3kta_A Chromosome segregation 93.6 0.039 1.3E-06 48.9 3.3 24 251-274 28-51 (182)
383 3fvq_A Fe(3+) IONS import ATP- 93.6 0.037 1.3E-06 55.2 3.4 27 247-273 28-54 (359)
384 1g8f_A Sulfate adenylyltransfe 93.6 0.034 1.2E-06 58.1 3.3 27 249-275 395-421 (511)
385 3eiq_A Eukaryotic initiation f 93.6 0.16 5.5E-06 50.8 8.3 21 249-269 77-97 (414)
386 3lv8_A DTMP kinase, thymidylat 93.6 0.04 1.4E-06 51.6 3.5 25 249-273 27-51 (236)
387 1g6h_A High-affinity branched- 93.6 0.034 1.2E-06 52.8 3.0 27 247-273 31-57 (257)
388 2pze_A Cystic fibrosis transme 93.6 0.035 1.2E-06 51.7 3.1 27 247-273 32-58 (229)
389 2ixe_A Antigen peptide transpo 93.6 0.036 1.2E-06 53.1 3.2 27 247-273 43-69 (271)
390 3v9p_A DTMP kinase, thymidylat 93.5 0.056 1.9E-06 50.3 4.3 25 249-273 25-49 (227)
391 4edh_A DTMP kinase, thymidylat 93.5 0.044 1.5E-06 50.5 3.6 32 249-280 6-40 (213)
392 1ji0_A ABC transporter; ATP bi 93.5 0.037 1.3E-06 52.0 3.0 27 248-274 31-57 (240)
393 1vpl_A ABC transporter, ATP-bi 93.5 0.039 1.3E-06 52.4 3.2 27 247-273 39-65 (256)
394 1bif_A 6-phosphofructo-2-kinas 93.5 0.022 7.5E-07 59.1 1.6 26 249-274 39-64 (469)
395 2ff7_A Alpha-hemolysin translo 93.5 0.037 1.3E-06 52.2 3.0 27 247-273 33-59 (247)
396 2qi9_C Vitamin B12 import ATP- 93.4 0.038 1.3E-06 52.2 3.1 28 247-274 24-51 (249)
397 2yyz_A Sugar ABC transporter, 93.4 0.045 1.5E-06 54.6 3.7 27 247-273 27-53 (359)
398 3gfo_A Cobalt import ATP-bindi 93.4 0.038 1.3E-06 53.0 3.1 27 247-273 32-58 (275)
399 2it1_A 362AA long hypothetical 93.4 0.046 1.6E-06 54.6 3.8 27 247-273 27-53 (362)
400 3rlf_A Maltose/maltodextrin im 93.4 0.046 1.6E-06 55.0 3.8 27 247-273 27-53 (381)
401 2yz2_A Putative ABC transporte 93.4 0.04 1.4E-06 52.6 3.2 27 247-273 31-57 (266)
402 2wjy_A Regulator of nonsense t 93.4 0.071 2.4E-06 59.0 5.5 23 250-272 372-394 (800)
403 3cr8_A Sulfate adenylyltranfer 93.4 0.026 8.7E-07 59.7 1.9 38 248-285 368-409 (552)
404 4g1u_C Hemin import ATP-bindin 93.3 0.04 1.4E-06 52.6 3.1 27 247-273 35-61 (266)
405 1v43_A Sugar-binding transport 93.3 0.049 1.7E-06 54.7 3.8 27 247-273 35-61 (372)
406 2www_A Methylmalonic aciduria 93.3 0.13 4.5E-06 51.0 7.0 24 249-272 74-97 (349)
407 3h1t_A Type I site-specific re 93.3 0.19 6.7E-06 53.3 8.7 24 249-272 198-221 (590)
408 3sop_A Neuronal-specific septi 93.3 0.041 1.4E-06 52.7 3.0 23 251-273 4-26 (270)
409 1z47_A CYSA, putative ABC-tran 93.3 0.047 1.6E-06 54.4 3.6 26 248-273 40-65 (355)
410 1z2a_A RAS-related protein RAB 93.2 0.051 1.7E-06 46.7 3.4 23 250-272 6-28 (168)
411 3l9o_A ATP-dependent RNA helic 93.2 0.16 5.5E-06 58.2 8.4 35 249-283 199-236 (1108)
412 2ihy_A ABC transporter, ATP-bi 93.2 0.042 1.5E-06 52.8 3.1 28 247-274 45-72 (279)
413 2wsm_A Hydrogenase expression/ 93.2 0.046 1.6E-06 49.9 3.2 26 249-274 30-55 (221)
414 3k53_A Ferrous iron transport 93.2 0.092 3.1E-06 49.9 5.4 23 250-272 4-26 (271)
415 1kao_A RAP2A; GTP-binding prot 93.2 0.054 1.8E-06 46.4 3.4 23 250-272 4-26 (167)
416 2nq2_C Hypothetical ABC transp 93.2 0.044 1.5E-06 51.9 3.0 27 247-273 29-55 (253)
417 2wji_A Ferrous iron transport 93.1 0.049 1.7E-06 47.3 3.1 23 250-272 4-26 (165)
418 1lw7_A Transcriptional regulat 93.1 0.049 1.7E-06 54.4 3.5 28 249-276 170-197 (365)
419 2zej_A Dardarin, leucine-rich 93.1 0.041 1.4E-06 48.7 2.6 21 251-271 4-24 (184)
420 4a1f_A DNAB helicase, replicat 93.1 0.099 3.4E-06 51.7 5.6 37 247-283 44-83 (338)
421 3d31_A Sulfate/molybdate ABC t 93.1 0.04 1.4E-06 54.7 2.7 27 247-273 24-50 (348)
422 4ddu_A Reverse gyrase; topoiso 93.0 0.5 1.7E-05 54.1 12.0 22 249-270 93-114 (1104)
423 1g29_1 MALK, maltose transport 93.0 0.053 1.8E-06 54.4 3.6 26 248-273 28-53 (372)
424 2lkc_A Translation initiation 93.0 0.074 2.5E-06 46.3 4.1 25 248-272 7-31 (178)
425 1u8z_A RAS-related protein RAL 93.0 0.051 1.8E-06 46.5 3.0 23 250-272 5-27 (168)
426 1ek0_A Protein (GTP-binding pr 93.0 0.058 2E-06 46.4 3.4 23 250-272 4-26 (170)
427 2ce2_X GTPase HRAS; signaling 93.0 0.053 1.8E-06 46.3 3.1 22 251-272 5-26 (166)
428 2nzj_A GTP-binding protein REM 93.0 0.053 1.8E-06 47.0 3.1 23 250-272 5-27 (175)
429 2gj8_A MNME, tRNA modification 93.0 0.05 1.7E-06 47.7 2.9 24 249-272 4-27 (172)
430 1wb9_A DNA mismatch repair pro 92.9 0.17 5.6E-06 56.0 7.6 24 249-272 607-630 (800)
431 1z0j_A RAB-22, RAS-related pro 92.9 0.061 2.1E-06 46.3 3.4 23 250-272 7-29 (170)
432 1ewq_A DNA mismatch repair pro 92.9 0.15 5.2E-06 55.9 7.3 23 250-272 577-599 (765)
433 3ld9_A DTMP kinase, thymidylat 92.9 0.065 2.2E-06 49.7 3.7 27 249-275 21-47 (223)
434 1wms_A RAB-9, RAB9, RAS-relate 92.9 0.062 2.1E-06 46.7 3.4 23 250-272 8-30 (177)
435 1ky3_A GTP-binding protein YPT 92.8 0.064 2.2E-06 46.7 3.4 24 249-272 8-31 (182)
436 4f4c_A Multidrug resistance pr 92.8 0.35 1.2E-05 56.5 10.5 28 247-274 442-469 (1321)
437 1z08_A RAS-related protein RAB 92.8 0.065 2.2E-06 46.2 3.4 23 250-272 7-29 (170)
438 1upt_A ARL1, ADP-ribosylation 92.7 0.071 2.4E-06 46.0 3.6 24 249-272 7-30 (171)
439 2f1r_A Molybdopterin-guanine d 92.7 0.034 1.2E-06 49.4 1.5 24 250-273 3-26 (171)
440 2ykg_A Probable ATP-dependent 92.7 0.45 1.5E-05 51.4 10.7 23 250-272 29-51 (696)
441 3e2i_A Thymidine kinase; Zn-bi 92.7 0.38 1.3E-05 44.2 8.5 33 250-282 29-64 (219)
442 1g16_A RAS-related protein SEC 92.7 0.062 2.1E-06 46.2 3.1 23 250-272 4-26 (170)
443 1r2q_A RAS-related protein RAB 92.6 0.067 2.3E-06 46.0 3.2 23 250-272 7-29 (170)
444 1c1y_A RAS-related protein RAP 92.6 0.067 2.3E-06 45.9 3.2 23 250-272 4-26 (167)
445 2hf9_A Probable hydrogenase ni 92.6 0.099 3.4E-06 47.8 4.6 25 249-273 38-62 (226)
446 3sqw_A ATP-dependent RNA helic 92.6 0.49 1.7E-05 50.0 10.6 20 249-268 60-79 (579)
447 1r8s_A ADP-ribosylation factor 92.6 0.072 2.5E-06 45.6 3.4 22 251-272 2-23 (164)
448 3q85_A GTP-binding protein REM 92.6 0.065 2.2E-06 46.2 3.1 21 251-271 4-24 (169)
449 3gd7_A Fusion complex of cysti 92.6 0.064 2.2E-06 54.1 3.4 26 247-272 45-70 (390)
450 2xzl_A ATP-dependent helicase 92.6 0.1 3.5E-06 57.8 5.3 21 251-271 377-397 (802)
451 3bc1_A RAS-related protein RAB 92.5 0.071 2.4E-06 47.0 3.4 23 250-272 12-34 (195)
452 2hxs_A RAB-26, RAS-related pro 92.5 0.067 2.3E-06 46.6 3.2 24 249-272 6-29 (178)
453 1oxx_K GLCV, glucose, ABC tran 92.5 0.042 1.4E-06 54.8 2.0 27 247-273 29-55 (353)
454 2erx_A GTP-binding protein DI- 92.5 0.067 2.3E-06 46.0 3.1 23 250-272 4-26 (172)
455 2o8b_B DNA mismatch repair pro 92.5 0.28 9.7E-06 55.6 9.0 22 249-270 789-810 (1022)
456 2bbs_A Cystic fibrosis transme 92.5 0.058 2E-06 52.2 2.9 27 247-273 62-88 (290)
457 2pjz_A Hypothetical protein ST 92.5 0.063 2.2E-06 51.1 3.1 25 249-273 30-54 (263)
458 2wjg_A FEOB, ferrous iron tran 92.5 0.066 2.3E-06 47.2 3.1 23 250-272 8-30 (188)
459 4ag6_A VIRB4 ATPase, type IV s 92.4 0.13 4.3E-06 51.8 5.4 35 248-282 34-71 (392)
460 2vp4_A Deoxynucleoside kinase; 92.4 0.066 2.3E-06 49.6 3.0 31 247-278 18-48 (230)
461 3clv_A RAB5 protein, putative; 92.3 0.087 3E-06 46.7 3.6 24 249-272 7-30 (208)
462 4dsu_A GTPase KRAS, isoform 2B 92.3 0.078 2.7E-06 46.6 3.3 23 250-272 5-27 (189)
463 4tmk_A Protein (thymidylate ki 92.3 0.084 2.9E-06 48.6 3.6 24 250-273 4-27 (213)
464 1z0f_A RAB14, member RAS oncog 92.3 0.082 2.8E-06 45.9 3.4 23 250-272 16-38 (179)
465 2y8e_A RAB-protein 6, GH09086P 92.3 0.071 2.4E-06 46.3 3.0 23 250-272 15-37 (179)
466 1ko7_A HPR kinase/phosphatase; 92.2 0.098 3.4E-06 51.0 4.2 30 248-278 143-172 (314)
467 2oil_A CATX-8, RAS-related pro 92.2 0.079 2.7E-06 47.0 3.3 23 250-272 26-48 (193)
468 1m7b_A RND3/RHOE small GTP-bin 92.2 0.072 2.4E-06 47.0 3.0 23 250-272 8-30 (184)
469 1yrb_A ATP(GTP)binding protein 92.2 0.14 4.9E-06 47.9 5.2 34 249-282 14-49 (262)
470 3iby_A Ferrous iron transport 92.2 0.17 5.8E-06 47.8 5.7 23 250-272 2-24 (256)
471 2efe_B Small GTP-binding prote 92.2 0.083 2.8E-06 46.1 3.3 23 250-272 13-35 (181)
472 3con_A GTPase NRAS; structural 92.2 0.081 2.8E-06 46.8 3.2 23 250-272 22-44 (190)
473 2fn4_A P23, RAS-related protei 92.1 0.076 2.6E-06 46.2 3.0 23 250-272 10-32 (181)
474 2a9k_A RAS-related protein RAL 92.1 0.082 2.8E-06 46.3 3.2 23 250-272 19-41 (187)
475 2obl_A ESCN; ATPase, hydrolase 92.1 0.13 4.3E-06 51.1 4.9 28 249-276 71-98 (347)
476 1f2t_A RAD50 ABC-ATPase; DNA d 92.1 0.078 2.7E-06 45.8 2.9 24 250-273 24-47 (149)
477 1gm5_A RECG; helicase, replica 92.1 0.7 2.4E-05 50.8 11.2 35 249-283 389-426 (780)
478 1zd9_A ADP-ribosylation factor 92.1 0.073 2.5E-06 47.2 2.8 24 249-272 22-45 (188)
479 3tw8_B RAS-related protein RAB 92.0 0.078 2.7E-06 46.1 2.9 23 250-272 10-32 (181)
480 2bme_A RAB4A, RAS-related prot 92.0 0.08 2.7E-06 46.5 3.0 23 250-272 11-33 (186)
481 3kkq_A RAS-related protein M-R 92.0 0.092 3.1E-06 46.0 3.3 24 249-272 18-41 (183)
482 1knx_A Probable HPR(Ser) kinas 91.9 0.095 3.3E-06 51.1 3.7 32 247-279 145-176 (312)
483 1m2o_B GTP-binding protein SAR 91.9 0.087 3E-06 46.9 3.2 24 249-272 23-46 (190)
484 3tui_C Methionine import ATP-b 91.9 0.098 3.3E-06 52.2 3.8 27 247-273 52-78 (366)
485 2a9u_A Ubiquitin carboxyl-term 91.9 0.74 2.5E-05 39.4 8.7 79 49-127 34-117 (144)
486 3nh6_A ATP-binding cassette SU 91.9 0.06 2E-06 52.5 2.1 27 247-273 78-104 (306)
487 1mh1_A RAC1; GTP-binding, GTPa 91.9 0.093 3.2E-06 45.9 3.2 23 250-272 6-28 (186)
488 1svi_A GTP-binding protein YSX 91.9 0.091 3.1E-06 46.6 3.2 24 249-272 23-46 (195)
489 2npi_A Protein CLP1; CLP1-PCF1 91.9 0.086 3E-06 54.4 3.4 27 247-273 136-162 (460)
490 2g6b_A RAS-related protein RAB 91.8 0.099 3.4E-06 45.5 3.4 24 249-272 10-33 (180)
491 3t1o_A Gliding protein MGLA; G 91.8 0.089 3E-06 46.5 3.1 24 250-273 15-38 (198)
492 2gf9_A RAS-related protein RAB 91.8 0.096 3.3E-06 46.3 3.2 23 250-272 23-45 (189)
493 3ihw_A Centg3; RAS, centaurin, 91.8 0.098 3.3E-06 46.4 3.3 23 250-272 21-43 (184)
494 3c5c_A RAS-like protein 12; GD 91.7 0.099 3.4E-06 46.4 3.3 23 250-272 22-44 (187)
495 1dek_A Deoxynucleoside monopho 91.7 0.096 3.3E-06 49.2 3.3 27 251-277 3-29 (241)
496 2dpy_A FLII, flagellum-specifi 91.7 0.14 4.9E-06 52.4 4.9 28 249-276 157-184 (438)
497 3bwd_D RAC-like GTP-binding pr 91.7 0.12 4E-06 45.1 3.8 24 249-272 8-31 (182)
498 2atv_A RERG, RAS-like estrogen 91.7 0.11 3.8E-06 46.3 3.6 24 249-272 28-51 (196)
499 3tkl_A RAS-related protein RAB 91.7 0.1 3.4E-06 46.3 3.2 23 250-272 17-39 (196)
500 1pui_A ENGB, probable GTP-bind 91.6 0.054 1.9E-06 48.8 1.5 25 248-272 25-49 (210)
No 1
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.3e-58 Score=484.29 Aligned_cols=398 Identities=37% Similarity=0.611 Sum_probs=246.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCC-CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011393 52 GYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTP-VPSYISTSEHEKVKSYRQKISKWQSQVSDRLQALNR 130 (487)
Q Consensus 52 ~~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~-~~~~~~~~~~~k~~~y~~rae~~k~~v~~rl~~L~~ 130 (487)
+++++|++++++||++|++|+|++|+.+|++|+++|+.+++++ .++..+..++.|+.+|++|+|+++..++.......+
T Consensus 6 ~~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~k~e~~~~~~k~~ir~k~~ey~~Rae~Lk~~l~k~~~~~~~ 85 (444)
T 2zan_A 6 TNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQK 85 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 4789999999999999999999999999999999999999998 777779999999999999999999885322111000
Q ss_pred hhCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCccccccccccCCCchhhhccCCCChHHHHHhhhccccCC
Q 011393 131 RAGGTSTSKSTSPHAQTAAVSSTSNFRKNISPNSPRSSRNNPVVRNQTEKTGSSKPLAEAGNGYDSKLVEMINTAIVDRS 210 (487)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (487)
+.+. .. .+.....+ ..+...........+.+.+.+...++.++
T Consensus 86 ------~~~~--------~~------------~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 128 (444)
T 2zan_A 86 ------PVKE--------EQ------------SGPVDEKG-----------NDSDGEAESDDPEKKKLQNQLQGAIVIER 128 (444)
T ss_dssp ---------------------------------------------------------------------------CBCCC
T ss_pred ------cccc--------cc------------CCcccccC-----------CCCcccccccchHHHHHHHHhhcceeccC
Confidence 0000 00 00000000 00001112223445667788888899999
Q ss_pred CCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-CCeEEEEecCccchhc
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-QATFFNVSASSLTSKW 289 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-~~~~~~v~~~~l~~~~ 289 (487)
|+++|+||+|++.+++.|.+.+.+|+.++.+|.+...+++++|||||||||||+||+++|+++ +.+|+.++++++.+.|
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC------
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhh
Confidence 999999999999999999999999999999988766788999999999999999999999999 8999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHH
Q 011393 290 VGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDA 369 (487)
Q Consensus 290 ~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~a 369 (487)
.|..+..++.+|..++...|+||||||||.+++.+.........+++++|+..|++.... ..+++||+|||.|+.++++
T Consensus 209 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-~~~v~vI~atn~~~~ld~a 287 (444)
T 2zan_A 209 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVLDSA 287 (444)
T ss_dssp ---CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC-CSSCEEEEEESCGGGSCHH
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC-CCCEEEEecCCCccccCHH
Confidence 999999999999999999999999999999998887777777889999999999987532 4569999999999999999
Q ss_pred HHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccch--h----
Q 011393 370 VLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNI--L---- 443 (487)
Q Consensus 370 l~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~--~---- 443 (487)
++|||+..+++++|+.++|..||+.++...+..+++.++..|+..++||+++||..+|++|++.++++..... .
T Consensus 288 l~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~ 367 (444)
T 2zan_A 288 IRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRG 367 (444)
T ss_dssp HHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECC
T ss_pred HHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 9999999999999999999999999999888778899999999999999999999999999999999864210 0
Q ss_pred ------------------------------cccc--ccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCCC
Q 011393 444 ------------------------------TVKA--NQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGSN 487 (487)
Q Consensus 444 ------------------------------~~~~--~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~g~~ 487 (487)
.... ...++|+++||..|++.++||+++++++.|++|+++||++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~~~~~ 443 (444)
T 2zan_A 368 PSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQE 443 (444)
T ss_dssp BCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSSCTTT
T ss_pred ccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCC
Confidence 0000 1125799999999999999999999999999999999975
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-50 Score=404.89 Aligned_cols=260 Identities=34% Similarity=0.602 Sum_probs=232.5
Q ss_pred hhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 202 INTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 202 ~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
+....+.+.|+++|+||+|++++|+.|++.+.+|+.+|++|... ..+++|+|||||||||||+||+++|++++++|+.+
T Consensus 134 ~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 134 VSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp TTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred hhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 34456778899999999999999999999999999999999875 57789999999999999999999999999999999
Q ss_pred ecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 011393 281 SASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE---NDASRRLKSEFLIQFDGVTSNPNDLVIVM 357 (487)
Q Consensus 281 ~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vivI 357 (487)
+++++.++|+|++++.++.+|..|+..+||||||||+|.+++.|..+. +....+.+.+||.+||++... .+|+||
T Consensus 214 ~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vI 291 (405)
T 4b4t_J 214 SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS--KNIKII 291 (405)
T ss_dssp EGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC--CCEEEE
T ss_pred EhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC--CCeEEE
Confidence 999999999999999999999999999999999999999999876543 234567889999999998754 459999
Q ss_pred EecCCCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Q 011393 358 GATNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPI 435 (487)
Q Consensus 358 ~ttn~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~ 435 (487)
+|||+|+.||++++| ||++.|+|++|+.++|.+||+.++++.++. .+.+++.||..|+||||+||.++|++|++.|+
T Consensus 292 aATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 292 MATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp EEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred eccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999987765 56789999999999999999999999999999
Q ss_pred HhhccchhccccccCCCCcHHHHHHHHHhhCCCCCHHHHH
Q 011393 436 RELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWE 475 (487)
Q Consensus 436 ~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ps~s~~~i~ 475 (487)
++. ...|+++||..|++++.+...+..+.
T Consensus 371 r~~-----------~~~vt~~Df~~Al~~v~~~~~~~~~s 399 (405)
T 4b4t_J 371 RER-----------RIHVTQEDFELAVGKVMNKNQETAIS 399 (405)
T ss_dssp HTT-----------CSBCCHHHHHHHHHHHHHHHTCC---
T ss_pred HcC-----------CCCcCHHHHHHHHHHHhCccccccch
Confidence 863 24589999999999887654444433
No 3
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-48 Score=395.59 Aligned_cols=262 Identities=35% Similarity=0.592 Sum_probs=228.6
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~ 284 (487)
-+++.|+++|+||+|++++|+.|++.+.+|+.++++|... ..+++|||||||||||||+||+++|++++++|+.+++++
T Consensus 199 ~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~ 278 (467)
T 4b4t_H 199 TVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSE 278 (467)
T ss_dssp EEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred eecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHH
Confidence 4677899999999999999999999999999999999876 478999999999999999999999999999999999999
Q ss_pred cchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 011393 285 LTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE---NDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 361 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn 361 (487)
+.++|+|++++.++.+|..|+..+||||||||+|.++..|.... .....+.+.++|.+|++.... ..|+||+|||
T Consensus 279 L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATN 356 (467)
T 4b4t_H 279 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR--GNIKVMFATN 356 (467)
T ss_dssp GCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECS
T ss_pred hhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC--CcEEEEeCCC
Confidence 99999999999999999999999999999999999999886543 234567788999999988654 4599999999
Q ss_pred CCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhc
Q 011393 362 KPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG 439 (487)
Q Consensus 362 ~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~ 439 (487)
+|+.||++++| ||++.|+|++|+.++|.+||+.++++..+. .+.+++.||+.|+||||+||.++|++|++.|+++.
T Consensus 357 rpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~- 434 (467)
T 4b4t_H 357 RPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR- 434 (467)
T ss_dssp CTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT-
T ss_pred CcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-
Confidence 99999999999 999999999999999999999999987665 56789999999999999999999999999999873
Q ss_pred cchhccccccCCCCcHHHHHHHHHhhCCCCCH-HHHHHHHHHH
Q 011393 440 TNILTVKANQLRPLRYEDFQKAMAVIRPSLNK-SKWEELEQWN 481 (487)
Q Consensus 440 ~~~~~~~~~~~~~l~~~df~~al~~~~ps~s~-~~i~~~~~w~ 481 (487)
...|+.+||.+|+.++.+...+ +...+|.+|+
T Consensus 435 ----------~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 435 ----------RKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp ----------CSSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred ----------CCccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 2458999999999988664432 4566788885
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-48 Score=397.42 Aligned_cols=256 Identities=35% Similarity=0.586 Sum_probs=232.2
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~ 283 (487)
..+++.|+++|+||+|++++|+.|++.+.+|+.++++|... ..+++|||||||||||||+||+++|++++++|+.++++
T Consensus 171 ~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 171 MKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp CEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred eeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence 45678899999999999999999999999999999999876 47789999999999999999999999999999999999
Q ss_pred ccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 011393 284 SLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE---NDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 360 (487)
Q Consensus 284 ~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vivI~tt 360 (487)
++.++|+|++++.++.+|..|+..+||||||||+|.+++.|.... .....+.+.+||.+||+.... .+|+||+||
T Consensus 251 ~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaAT 328 (437)
T 4b4t_I 251 ELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMAT 328 (437)
T ss_dssp GGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEE
T ss_pred HhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC--CCEEEEEeC
Confidence 999999999999999999999999999999999999999885433 334567889999999988654 459999999
Q ss_pred CCCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhh
Q 011393 361 NKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 438 (487)
Q Consensus 361 n~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~ 438 (487)
|+|+.||++++| ||++.|+|++||.++|.+||+.++++..+. .+.+++.||..|+||||+||.++|++|++.|+++.
T Consensus 329 Nrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~ 407 (437)
T 4b4t_I 329 NKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER 407 (437)
T ss_dssp SCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999 999999999999999999999999987655 56789999999999999999999999999999873
Q ss_pred ccchhccccccCCCCcHHHHHHHHHhhCCCCCHHHH
Q 011393 439 GTNILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKW 474 (487)
Q Consensus 439 ~~~~~~~~~~~~~~l~~~df~~al~~~~ps~s~~~i 474 (487)
...|+++||.+|++++.|+.+++.+
T Consensus 408 -----------~~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 408 -----------RMQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp -----------CSCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred -----------CCccCHHHHHHHHHHHhCCCChhhH
Confidence 2458999999999998887666554
No 5
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-46 Score=376.77 Aligned_cols=281 Identities=47% Similarity=0.791 Sum_probs=255.0
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-CCeEEEEecCc
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-QATFFNVSASS 284 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-~~~~~~v~~~~ 284 (487)
++.+.|+++|+||+|++.+++.|.+.+.+|+.++++|.+...+++++|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 2 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp CEEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eeecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 45678999999999999999999999999999999998777788999999999999999999999999 89999999999
Q ss_pred cchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 011393 285 LTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ 364 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~ 364 (487)
+.+.|.|..++.++.+|..++...|+||||||+|.+++.+.........+++++|+..|+++... ...++||++||.|+
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPW 160 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEESCTT
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc-CCCEEEEEecCCcc
Confidence 99999999999999999999999999999999999999888777778889999999999987532 45699999999999
Q ss_pred CCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchh-
Q 011393 365 ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL- 443 (487)
Q Consensus 365 ~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~- 443 (487)
.++++++|||+..+++++|+.++|.+|++.++...+..+++.++..|++.++||+++||..+|++|++.++++......
T Consensus 161 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~ 240 (322)
T 1xwi_A 161 VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHF 240 (322)
T ss_dssp TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEE
T ss_pred cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999998888888999999999999999999999999999999998642100
Q ss_pred -----------------------------------ccccc--cCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCC
Q 011393 444 -----------------------------------TVKAN--QLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGS 486 (487)
Q Consensus 444 -----------------------------------~~~~~--~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~g~ 486 (487)
..... ..++|+++||.+|++.++||+++++++.|++|+++||+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 320 (322)
T 1xwi_A 241 KKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ 320 (322)
T ss_dssp EEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTCS
T ss_pred hhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcc
Confidence 00001 12579999999999999999999999999999999997
Q ss_pred C
Q 011393 487 N 487 (487)
Q Consensus 487 ~ 487 (487)
+
T Consensus 321 ~ 321 (322)
T 1xwi_A 321 E 321 (322)
T ss_dssp C
T ss_pred C
Confidence 5
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-47 Score=392.93 Aligned_cols=253 Identities=38% Similarity=0.646 Sum_probs=230.8
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~ 283 (487)
..+++.|+++|+||+|++++|+.|++.+.+|+.++++|... ..+++|||||||||||||++|+++|++++++|+.++++
T Consensus 170 ~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s 249 (434)
T 4b4t_M 170 MEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAP 249 (434)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred cccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 45677899999999999999999999999999999999876 47789999999999999999999999999999999999
Q ss_pred ccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcch---HHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 011393 284 SLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANEND---ASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 360 (487)
Q Consensus 284 ~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~vivI~tt 360 (487)
++.++|+|++++.++.+|..|+...||||||||+|.+++.|...... ...+.+.+||..|+++... .+|+||+||
T Consensus 250 ~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaT 327 (434)
T 4b4t_M 250 QLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAAT 327 (434)
T ss_dssp GGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEEC
T ss_pred hhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC--CCEEEEEeC
Confidence 99999999999999999999999999999999999999988654433 3456788999999998754 459999999
Q ss_pred CCCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhh
Q 011393 361 NKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 438 (487)
Q Consensus 361 n~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~ 438 (487)
|+|+.||++++| ||++.|+|++|+.++|.+||+.++++..+. ++.+++.||..|+||||+||.++|++|++.|+++.
T Consensus 328 Nrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~ 406 (434)
T 4b4t_M 328 NRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG 406 (434)
T ss_dssp SSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999998 999999999999999999999999887654 56789999999999999999999999999999873
Q ss_pred ccchhccccccCCCCcHHHHHHHHHhhCCCCCH
Q 011393 439 GTNILTVKANQLRPLRYEDFQKAMAVIRPSLNK 471 (487)
Q Consensus 439 ~~~~~~~~~~~~~~l~~~df~~al~~~~ps~s~ 471 (487)
...|+.+||.+|+++++|+.++
T Consensus 407 -----------~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 407 -----------QSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp -----------CSSBCHHHHHHHHHSCSSSCCC
T ss_pred -----------CCCcCHHHHHHHHHHHhCCCCc
Confidence 2469999999999999998764
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-47 Score=393.33 Aligned_cols=259 Identities=31% Similarity=0.538 Sum_probs=230.9
Q ss_pred hhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 203 NTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 203 ~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
....+.+.|.++|+||+|++++++.|++.+.+|+.++++|... ..|++|||||||||||||+||+++|++++++|+.++
T Consensus 168 ~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 168 YNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp SSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred heeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 3456677899999999999999999999999999999999876 578899999999999999999999999999999999
Q ss_pred cCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 011393 282 ASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE---NDASRRLKSEFLIQFDGVTSNPNDLVIVMG 358 (487)
Q Consensus 282 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ 358 (487)
++++.++|+|++++.++.+|..|+...||||||||+|.+++.|.... .....+.+.+||.+|++.... .+|+||+
T Consensus 248 ~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ 325 (437)
T 4b4t_L 248 ASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIM 325 (437)
T ss_dssp GGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEE
T ss_pred hhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC--CCeEEEE
Confidence 99999999999999999999999999999999999999999885432 334567889999999998754 4589999
Q ss_pred ecCCCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Q 011393 359 ATNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIR 436 (487)
Q Consensus 359 ttn~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~ 436 (487)
|||+|+.||++++| ||++.|+|++|+.++|.+||+.++.+..+. ++.+++.||..|+||||+||.++|++|++.|++
T Consensus 326 ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air 404 (437)
T 4b4t_L 326 ATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404 (437)
T ss_dssp EESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998 699999999999999999999999987654 667899999999999999999999999999988
Q ss_pred hhccchhccccccCCCCcHHHHHHHHHhhCCCCCHHHHH
Q 011393 437 ELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWE 475 (487)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~~~df~~al~~~~ps~s~~~i~ 475 (487)
+. ...|+.+||.+|++++.|+...+...
T Consensus 405 ~~-----------~~~i~~~d~~~Al~~v~~~~k~e~~~ 432 (437)
T 4b4t_L 405 DD-----------RDHINPDDLMKAVRKVAEVKKLEGTI 432 (437)
T ss_dssp TT-----------CSSBCHHHHHHHHHHHHHTCC-----
T ss_pred cC-----------CCCCCHHHHHHHHHHHHhccCcccch
Confidence 63 24589999999999998876655433
No 8
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=7.1e-46 Score=377.18 Aligned_cols=293 Identities=45% Similarity=0.761 Sum_probs=239.9
Q ss_pred CChHHHHHhhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 194 YDSKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
...++...+...++.++|+++|+||+|++.+++.|.+.+.+|+.++++|.....++++||||||||||||++|+++|+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 29 DNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp ------------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 44567777888888999999999999999999999999999999999998877888999999999999999999999999
Q ss_pred CCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCc
Q 011393 274 QATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDL 353 (487)
Q Consensus 274 ~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 353 (487)
+.+|+.+++.++...|.|..+..++.+|..++...|+||||||+|.|.+.+.........++.++|+..|++.... ...
T Consensus 109 ~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~-~~~ 187 (355)
T 2qp9_X 109 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQG 187 (355)
T ss_dssp TCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC----CC
T ss_pred CCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc-CCC
Confidence 9999999999999999999999999999999999999999999999998877666777888999999999977532 345
Q ss_pred EEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 011393 354 VIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMM 433 (487)
Q Consensus 354 vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~ 433 (487)
++||++||.++.|++++++||+..+++++|+.++|.+||+.++...+..+++.+++.|+..++||+++||..+|++|++.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~ 267 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 267 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888778899999999999999999999999999999
Q ss_pred hHHhhccch------------------------------hcc--ccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 011393 434 PIRELGTNI------------------------------LTV--KANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWN 481 (487)
Q Consensus 434 a~~~~~~~~------------------------------~~~--~~~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~ 481 (487)
|+++..... ... .....++|+++||..|++.++||+++++++.|++|+
T Consensus 268 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~ 347 (355)
T 2qp9_X 268 PIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFT 347 (355)
T ss_dssp HHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 998753210 000 011235799999999999999999999999999999
Q ss_pred HHhCCC
Q 011393 482 REFGSN 487 (487)
Q Consensus 482 ~~~g~~ 487 (487)
++||++
T Consensus 348 ~~~~~~ 353 (355)
T 2qp9_X 348 RDFGQE 353 (355)
T ss_dssp HHTC--
T ss_pred HHhccC
Confidence 999974
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.2e-48 Score=426.73 Aligned_cols=277 Identities=38% Similarity=0.682 Sum_probs=195.7
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCcc
Q 011393 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (487)
Q Consensus 207 ~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l 285 (487)
....|+++|+||+|++++|+.|.+.+.+|+.+++.|... ..+++++|||||||||||++|+++|++++.+|+.++++++
T Consensus 468 ~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l 547 (806)
T 3cf2_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchh
Confidence 345688999999999999999999999999999999876 5788999999999999999999999999999999999999
Q ss_pred chhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 011393 286 TSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMAN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 362 (487)
Q Consensus 286 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~ 362 (487)
.++|+|++++.++.+|..|+...||||||||||.|++.|+.. .+....+++++||.+||++... ..|+||+|||+
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~--~~V~vi~aTN~ 625 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNR 625 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS--SSEEEECC-CC
T ss_pred hccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC--CCEEEEEeCCC
Confidence 999999999999999999999999999999999999988632 3446779999999999999754 45999999999
Q ss_pred CCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhcc
Q 011393 363 PQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 440 (487)
Q Consensus 363 ~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~ 440 (487)
|+.||++++| ||++.|+|++|+.++|.+||+.++++.++. .+.+++.||+.|+||||+||.++|++|++.|+++...
T Consensus 626 p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~ 704 (806)
T 3cf2_A 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 704 (806)
T ss_dssp SSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHHHHHHHHHHHHC
T ss_pred chhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999887765 6788999999999999999999999999999998643
Q ss_pred chh--------------ccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCC
Q 011393 441 NIL--------------TVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGS 486 (487)
Q Consensus 441 ~~~--------------~~~~~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~g~ 486 (487)
... .......++|+++||.+|++.++||+++++++.|++|+++|+.
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~ 764 (806)
T 3cf2_A 705 SEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp -----------------------CCC----CCTTTC---------------CCCC-----
T ss_pred hhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 110 1112234679999999999999999999999999999999875
No 10
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=9.8e-46 Score=371.42 Aligned_cols=283 Identities=47% Similarity=0.783 Sum_probs=251.4
Q ss_pred hccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC
Q 011393 204 TAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (487)
Q Consensus 204 ~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~ 283 (487)
..|+.++|+++|+||+|++.+++.|.+++.+|..+++++.....+++++|||||||||||++|+++|++++.+|+.++++
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 35778899999999999999999999999999999999988888889999999999999999999999999999999999
Q ss_pred ccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 011393 284 SLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 363 (487)
Q Consensus 284 ~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~ 363 (487)
++.+.|.|..+..++.+|..++...|+||||||||.|.+.+.........+++.+++..|++.... ...++||+|||.+
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~atn~~ 164 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIP 164 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEESCG
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc-CCceEEEEecCCh
Confidence 999999999999999999999999999999999999998876666667788999999999987532 4569999999999
Q ss_pred CCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchh
Q 011393 364 QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL 443 (487)
Q Consensus 364 ~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~ 443 (487)
+.|++++++||+..+++++|+.++|.+|++.++.+.+..+++.++..|+..++||+++||..+|++|++.++++......
T Consensus 165 ~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~ 244 (322)
T 3eie_A 165 WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 244 (322)
T ss_dssp GGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEE
T ss_pred hhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999998743210
Q ss_pred ------------------------------ccc--cccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCCC
Q 011393 444 ------------------------------TVK--ANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGSN 487 (487)
Q Consensus 444 ------------------------------~~~--~~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~g~~ 487 (487)
... ....++|+++||.+|++.++|+++.+++++|++|+++||++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 245 FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp EEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred hhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 000 11125799999999999999999999999999999999974
No 11
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-46 Score=384.00 Aligned_cols=255 Identities=36% Similarity=0.609 Sum_probs=229.4
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~ 283 (487)
..+++.|+++|+||+|++++|+.|++.+.+|+.++++|... ..+++|+|||||||||||++|+++|++++++|+.++++
T Consensus 161 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 161 MGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred ccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 34567899999999999999999999999999999999876 47889999999999999999999999999999999999
Q ss_pred ccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 011393 284 SLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMAN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 360 (487)
Q Consensus 284 ~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~tt 360 (487)
++.++|+|++++.++.+|..|+...||||||||+|.+++.|... .+....+++++||.+|+|+... .+|+||+||
T Consensus 241 ~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aT 318 (428)
T 4b4t_K 241 EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMAT 318 (428)
T ss_dssp GTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEE
T ss_pred hhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC--CCEEEEEec
Confidence 99999999999999999999999999999999999999987532 3445678899999999998754 449999999
Q ss_pred CCCCCCCHHHHc--ccccEEEcc-CCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHh
Q 011393 361 NKPQELDDAVLR--RLVKRIYVP-LPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 361 n~~~~ld~al~~--Rf~~~i~i~-~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~ 437 (487)
|+|+.||++++| ||+..|+|| +|+.++|..||+.++++.++. ++.+++.||..|+||||+||.++|++|++.|+++
T Consensus 319 N~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 319 NRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp SCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 999999999999 999999997 899999999999999987754 5678999999999999999999999999999987
Q ss_pred hccchhccccccCCCCcHHHHHHHHHh-hCCCCCHHH
Q 011393 438 LGTNILTVKANQLRPLRYEDFQKAMAV-IRPSLNKSK 473 (487)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~~df~~al~~-~~ps~s~~~ 473 (487)
. ...|+++||.+|+.. ++++.+.+.
T Consensus 398 ~-----------~~~i~~~d~~~A~~~~~~~~~~~~~ 423 (428)
T 4b4t_K 398 N-----------RYVILQSDLEEAYATQVKTDNTVDK 423 (428)
T ss_dssp T-----------CSSBCHHHHHHHHHHHSCSCCCSSC
T ss_pred C-----------CCCCCHHHHHHHHHHhhCccCCccH
Confidence 3 245899999999976 566655443
No 12
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-43 Score=357.71 Aligned_cols=302 Identities=49% Similarity=0.891 Sum_probs=262.6
Q ss_pred hhhhccCCCChHHHHHhhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHH
Q 011393 186 PLAEAGNGYDSKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTML 265 (487)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~l 265 (487)
+........++.+.+.+.+.+++++++++|++|+|++.+++.|.+.+.+|+..+.++.....+++++||+||||||||++
T Consensus 54 ~~~~~l~~~~~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 54 PVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLI 133 (357)
T ss_dssp ---CCSTTSCHHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHH
T ss_pred hHHHHhccCChHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHH
Confidence 34556677888889999999999999999999999999999999999999999988887777889999999999999999
Q ss_pred HHHHHHHcCCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcC
Q 011393 266 AKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDG 345 (487)
Q Consensus 266 a~aiA~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~ 345 (487)
|+++|++++.+|+.++++++...+.|..+..++.+|..+....|+||||||||.|++.+.........+++.+|+..+++
T Consensus 134 a~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~ 213 (357)
T 3d8b_A 134 GKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDG 213 (357)
T ss_dssp HHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998999999999999999887666666778899999999998
Q ss_pred CCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHH
Q 011393 346 VTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQA 425 (487)
Q Consensus 346 ~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~ 425 (487)
.......+++||++||.++.+++++++||...+++++|+.++|.+++..++...++.+++.+++.|+..+.||+++||..
T Consensus 214 ~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~ 293 (357)
T 3d8b_A 214 ATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQ 293 (357)
T ss_dssp ----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHH
T ss_pred ccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHH
Confidence 76555667999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHhHHhhccch-hccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCCC
Q 011393 426 LCEEAAMMPIRELGTNI-LTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGSN 487 (487)
Q Consensus 426 lv~~A~~~a~~~~~~~~-~~~~~~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~g~~ 487 (487)
+|++|+..+++++.... ......+..+|+.+||..|+..++|++++++++.|++|+++||+.
T Consensus 294 l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 294 LCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp HHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999765321 112223457899999999999999999999999999999999974
No 13
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=5.3e-42 Score=353.07 Aligned_cols=295 Identities=58% Similarity=0.906 Sum_probs=247.8
Q ss_pred CCCChHHHHHhhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHH
Q 011393 192 NGYDSKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVAS 271 (487)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~ 271 (487)
...++.+.+.+...|++++++++|++|+|++.+++.|.+++..+..++.++.+...+++++|||||||||||++|+++|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 91 RNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp ------CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred ccccHHHHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34455666778889999999999999999999999999999999999998888877889999999999999999999999
Q ss_pred HcCCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCC
Q 011393 272 ESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPN 351 (487)
Q Consensus 272 ~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 351 (487)
+++.+|+.+++.++.+.+.|..+..++.+|..+....|+||||||||.|+..+.........+++.+|+..+++......
T Consensus 171 ~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp HTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred hhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 99999999999999999999999999999999999999999999999998877666666678889999999998776556
Q ss_pred CcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 011393 352 DLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAA 431 (487)
Q Consensus 352 ~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~ 431 (487)
.+++||+|||.++.+++++++||...++++.|+.++|..||+.++...+..+++.++..|+..+.||++++|..+|+.|+
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~ 330 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAA 330 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 67999999999999999999999989999999999999999999999888899999999999999999999999999999
Q ss_pred HHhHHhhccchh-ccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCC
Q 011393 432 MMPIRELGTNIL-TVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGS 486 (487)
Q Consensus 432 ~~a~~~~~~~~~-~~~~~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~g~ 486 (487)
..+++++..... .....+...|+.+||..++..++|+++.+.++.|++|.++||+
T Consensus 331 ~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~ 386 (389)
T 3vfd_A 331 LGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGD 386 (389)
T ss_dssp THHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC-
T ss_pred HHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 999998754221 2223345679999999999999999999999999999999996
No 14
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=7.1e-42 Score=338.90 Aligned_cols=290 Identities=54% Similarity=0.901 Sum_probs=247.9
Q ss_pred HHHHHhhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe
Q 011393 197 KLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT 276 (487)
Q Consensus 197 ~l~~~~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~ 276 (487)
++.+.+...++.++|+++|++|+|++.+++.|.+.+..+..+++++.+...++.++||+||||||||++|+++|++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp CHHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 46677888999999999999999999999999999999999999888777778999999999999999999999999999
Q ss_pred EEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCC-CCcEE
Q 011393 277 FFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNP-NDLVI 355 (487)
Q Consensus 277 ~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vi 355 (487)
|+.++++++...+.+.....++.+|..+....|+||||||+|.++..+.........++...|+..+++..... ...++
T Consensus 82 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 161 (297)
T 3b9p_A 82 FLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIV 161 (297)
T ss_dssp EEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEE
T ss_pred eEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 99999999999999999999999999999999999999999999887765544556778888999888765432 24689
Q ss_pred EEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Q 011393 356 VMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPI 435 (487)
Q Consensus 356 vI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~ 435 (487)
||++||.++.+++++++||...+++++|+.++|..|++.++...+..+++..+..|+..+.||+++||..+|++|+..++
T Consensus 162 vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~ 241 (297)
T 3b9p_A 162 VLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 241 (297)
T ss_dssp EEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHH
T ss_pred EEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988877889999999999999999999999999999999
Q ss_pred Hhhccchh-ccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCC
Q 011393 436 RELGTNIL-TVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGS 486 (487)
Q Consensus 436 ~~~~~~~~-~~~~~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~g~ 486 (487)
++...... .........|+.+||..|+..++|+++++.++.|++|+++||+
T Consensus 242 r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~ 293 (297)
T 3b9p_A 242 RELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGD 293 (297)
T ss_dssp HTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred HHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 98643211 1122334679999999999999999999999999999999996
No 15
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=4e-41 Score=334.73 Aligned_cols=278 Identities=38% Similarity=0.683 Sum_probs=240.7
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~ 283 (487)
+++.+.|+++|+||+|++.+++.|.+++.+|+.+++.|... ..++.++|||||||||||++|+++|++++.+|+.+++.
T Consensus 4 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~ 83 (301)
T 3cf0_A 4 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 83 (301)
T ss_dssp CCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHH
T ss_pred cccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhH
Confidence 45567899999999999999999999999999999988865 36778999999999999999999999999999999999
Q ss_pred ccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 011393 284 SLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMAN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 360 (487)
Q Consensus 284 ~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~tt 360 (487)
++.+.|+|..+..++.+|..+....|+||||||+|.|...+... ......+++.+|+..|+++.. ..+++||+||
T Consensus 84 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~at 161 (301)
T 3cf0_A 84 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGAT 161 (301)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEE
T ss_pred HHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEec
Confidence 99999999999999999999999999999999999998765432 122345678889999998754 3459999999
Q ss_pred CCCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhh
Q 011393 361 NKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 438 (487)
Q Consensus 361 n~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~ 438 (487)
|.++.+++++++ ||...+++++|+.++|.+|++.++...++. .+.+++.++..+.||+|+||.++|++|++.++++.
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~ 240 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 240 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999887654 56789999999999999999999999999998875
Q ss_pred ccchhc-----------c---ccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhC
Q 011393 439 GTNILT-----------V---KANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFG 485 (487)
Q Consensus 439 ~~~~~~-----------~---~~~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~g 485 (487)
...... . .......|+.+||.+|++.++|++++++++.|++|+++|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 241 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 321000 0 0112357999999999999999999999999999999983
No 16
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.9e-41 Score=371.96 Aligned_cols=259 Identities=36% Similarity=0.580 Sum_probs=233.2
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccccChhhhhccC-CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch
Q 011393 209 RSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (487)
Q Consensus 209 ~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~-~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~ 287 (487)
..|.++|+||+|++++++.|++++.+|+.++++|...+ .+++|||||||||||||+||+++|++++.+|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 45789999999999999999999999999999999874 78899999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 011393 288 KWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELD 367 (487)
Q Consensus 288 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld 367 (487)
+|.|++++.++.+|..|+...||||||||+|.|++.+.+...+..++++++|+.+|+++... .+|+||++||+++.||
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSID 354 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTTSC
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc--CCEEEEEecCChhhcC
Confidence 99999999999999999999999999999999999998877788899999999999998654 4599999999999999
Q ss_pred HHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhcc
Q 011393 368 DAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTV 445 (487)
Q Consensus 368 ~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~ 445 (487)
++++| ||++.|++++|+.++|.+||+.++++..+. .+.++..||..|+||+++||.++|++|++.|+++....+...
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99999 999999999999999999999999887655 678899999999999999999999999999998864422111
Q ss_pred c------cccCCCCcHHHHHHHHHhhCCCCC
Q 011393 446 K------ANQLRPLRYEDFQKAMAVIRPSLN 470 (487)
Q Consensus 446 ~------~~~~~~l~~~df~~al~~~~ps~s 470 (487)
. ......++.+||..|++.++|+..
T Consensus 434 ~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~ 464 (806)
T 3cf2_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp CCCCSHHHHHHCEECTTHHHHHHSSSSCCCC
T ss_pred ccccchhhhccceeeHHHHHHHHHhCCCccc
Confidence 0 111245889999999999988653
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=312.10 Aligned_cols=263 Identities=35% Similarity=0.582 Sum_probs=206.8
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhccC-CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchh
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~-~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~ 288 (487)
.|+++|+||+|++++++.|.+.+.+|...+..+.... .+++|++|+||||||||+|++++|.+++..++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 5789999999999999999999999999999988763 567889999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCH
Q 011393 289 WVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDD 368 (487)
Q Consensus 289 ~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~ 368 (487)
+.++.++.++.+|..++...|+++|+||+|.++..+.........+..++++..|++.... ..++++++||.|+.||+
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~--~~~i~ia~tn~p~~LD~ 161 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR--QQVFIMAATNRPDIIDP 161 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST--TCEEEEEEESCGGGSCH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc--CCEEEEeecCChhhCCH
Confidence 9999999999999999888999999999999887654332233446778999999987643 44899999999999999
Q ss_pred HHHc--ccccEEEccCCCHHHHHHHHHHHhccCC-CCC-ChhhHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHhhccch
Q 011393 369 AVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQA-FSL-PGGDLERLVRET--EGYSGSDLQALCEEAAMMPIRELGTNI 442 (487)
Q Consensus 369 al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~-~~l-~~~~l~~La~~t--~G~s~~dL~~lv~~A~~~a~~~~~~~~ 442 (487)
+++| ||++.|++++|+.++|.+||+.++++.. ..+ .+.+++.||..+ +||+|+||.++|++|++.|+++.....
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~ 241 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQ 241 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999 9999999999999999999999986532 222 467899999874 599999999999999999998753321
Q ss_pred hccccccCCCCcHHHHHHHHHhhCCCCCHHHH
Q 011393 443 LTVKANQLRPLRYEDFQKAMAVIRPSLNKSKW 474 (487)
Q Consensus 443 ~~~~~~~~~~l~~~df~~al~~~~ps~s~~~i 474 (487)
..........|+++||.+|+++++|+++++++
T Consensus 242 ~~~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 242 KSGNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp --------CCBCHHHHHHHHTTCCCCC-----
T ss_pred cccccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 11111223479999999999999999998764
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=5.2e-36 Score=315.46 Aligned_cols=273 Identities=36% Similarity=0.576 Sum_probs=232.3
Q ss_pred CCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhc
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW 289 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~ 289 (487)
++++|++|+|++.+++.|.+++..++..+.+|... ..++.++|||||||||||++|+++|++++.+|+.++|.++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 56789999999999999999999999999999877 46778999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHH
Q 011393 290 VGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDA 369 (487)
Q Consensus 290 ~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~a 369 (487)
.|+....++.+|..+....|+||||||||.|++.+.....+...+++.+|+..|++... ...++||+|||.++.|+++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc--CCceEEEEecCCccccCHH
Confidence 99999999999999999999999999999999988777777888999999999997754 3459999999999999999
Q ss_pred HHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhcc--
Q 011393 370 VLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTV-- 445 (487)
Q Consensus 370 l~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~-- 445 (487)
+++ ||...+++++|+.++|.+||+.++...++. .+.++..++..+.||+++||..+|++|++.++++....+...
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 999 999999999999999999999999877655 566899999999999999999999999999998764321100
Q ss_pred ----ccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHH--HHHHhCC
Q 011393 446 ----KANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQ--WNREFGS 486 (487)
Q Consensus 446 ----~~~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~--w~~~~g~ 486 (487)
.......|+++||..|++.++|+..++.+.++.+ |.+.+|-
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~ 482 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGR 482 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC-------------
T ss_pred ccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCC
Confidence 0112246899999999999999887777666664 9999884
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1e-34 Score=285.65 Aligned_cols=267 Identities=40% Similarity=0.656 Sum_probs=217.6
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccC-CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCcc
Q 011393 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (487)
Q Consensus 207 ~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~-~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l 285 (487)
+...|+++|++|+|++.+++.|.+++..++..++.+...+ .++.++||+||||||||++|+++|++++.+++.+++.++
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 3456889999999999999999999999999988887764 667899999999999999999999999999999999999
Q ss_pred chhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 011393 286 TSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE---NDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 362 (487)
Q Consensus 286 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~ 362 (487)
...+.+.....++.+|..+....|+||||||+|.+++.+.+.. .......+..++..+++.... ..++||+|||.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~--~~~~vI~ttn~ 165 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR--GDVKIIGATNR 165 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS--SSEEEEEECSC
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEeCCC
Confidence 9999999999999999999999999999999999998776543 223455666777777766443 45999999999
Q ss_pred CCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhcc
Q 011393 363 PQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 440 (487)
Q Consensus 363 ~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~ 440 (487)
++.+++++++ ||...+.++.|+.++|.+|++.++...++. .+.++..++..+.|++++||..+|+.|...|+++.
T Consensus 166 ~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~-- 242 (285)
T 3h4m_A 166 PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL-- 242 (285)
T ss_dssp GGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT--
T ss_pred chhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--
Confidence 9999999999 999999999999999999999999877655 56689999999999999999999999999998763
Q ss_pred chhccccccCCCCcHHHHHHHHHhhCCC--CCHHHHHHHHHHHHHhCCC
Q 011393 441 NILTVKANQLRPLRYEDFQKAMAVIRPS--LNKSKWEELEQWNREFGSN 487 (487)
Q Consensus 441 ~~~~~~~~~~~~l~~~df~~al~~~~ps--~s~~~i~~~~~w~~~~g~~ 487 (487)
...|+.+||.+|+..+.+. .....-..+..|...||.+
T Consensus 243 ---------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (285)
T 3h4m_A 243 ---------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHH 282 (285)
T ss_dssp ---------CSSBCHHHHHHHHHHHHHHHCCC-----------------
T ss_pred ---------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccC
Confidence 2459999999999877542 3334456789999999863
No 20
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=5.3e-33 Score=269.54 Aligned_cols=247 Identities=36% Similarity=0.608 Sum_probs=208.8
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~ 284 (487)
|.+++++.+|+||+|++.+++.|.+.+.. +..+..+... ...++++||+||||||||++|+++|++++.+++.+++.+
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~ 80 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD 80 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCS
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHH
Confidence 56678899999999999999999988764 4444444433 355678999999999999999999999999999999999
Q ss_pred cchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 011393 285 LTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMAN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 361 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn 361 (487)
+...+.+.....++.+|..+....|++|||||+|.+...+... ......+.+.+++..+++... ...++||++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn 158 (257)
T 1lv7_A 81 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATN 158 (257)
T ss_dssp STTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEES
T ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeC
Confidence 9999999999999999999988889999999999998766432 223345678889999988754 34589999999
Q ss_pred CCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhc
Q 011393 362 KPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG 439 (487)
Q Consensus 362 ~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~ 439 (487)
.++.+++++++ ||+..+.+++|+.++|.+|++.++...++. ++.++..++..+.||+++||..+|++|+..|.++.
T Consensus 159 ~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~- 236 (257)
T 1lv7_A 159 RPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAARGN- 236 (257)
T ss_dssp CTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-
T ss_pred CchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-
Confidence 99999999998 999999999999999999999999876654 45678899999999999999999999999987652
Q ss_pred cchhccccccCCCCcHHHHHHHHHhhCC
Q 011393 440 TNILTVKANQLRPLRYEDFQKAMAVIRP 467 (487)
Q Consensus 440 ~~~~~~~~~~~~~l~~~df~~al~~~~p 467 (487)
...|+.+||.+|+..+..
T Consensus 237 ----------~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 237 ----------KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp ----------CSSBCHHHHHHHHHHHTT
T ss_pred ----------CCcccHHHHHHHHHHHhc
Confidence 246999999999988754
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=3e-33 Score=292.34 Aligned_cols=243 Identities=37% Similarity=0.624 Sum_probs=207.8
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchh
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~ 288 (487)
.+.++|+||+|++++++.|.+.+.. ...+..+... ...++++||+||||||||+||+++|++.+.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5788999999999999999998865 3455555554 4567899999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCC---CcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 011393 289 WVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMA---NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE 365 (487)
Q Consensus 289 ~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ 365 (487)
++|.....++.+|..++...|+||||||+|.+...++. +.+....+.+++|+..|+++.. ...++||++||.++.
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~--~~~viVIaaTn~~~~ 166 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPDI 166 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG--GGTEEEEEEESCGGG
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC--CCCEEEEEecCChhh
Confidence 99999999999999999999999999999999887653 2233456788999999987654 345999999999999
Q ss_pred CCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchh
Q 011393 366 LDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL 443 (487)
Q Consensus 366 ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~ 443 (487)
+++++++ ||+..+.+++|+.++|.+|++.++++.++. ++.++..++..+.||+++||.++|++|+..+.++.
T Consensus 167 Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~----- 240 (476)
T 2ce7_A 167 LDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG----- 240 (476)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC-----
Confidence 9999998 999999999999999999999999876654 55679999999999999999999999999887642
Q ss_pred ccccccCCCCcHHHHHHHHHhhCC
Q 011393 444 TVKANQLRPLRYEDFQKAMAVIRP 467 (487)
Q Consensus 444 ~~~~~~~~~l~~~df~~al~~~~p 467 (487)
...|+.+||..|+.++.+
T Consensus 241 ------~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 241 ------RDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp ------CSSBCHHHHHHHHHHHC-
T ss_pred ------CCeecHHHHHHHHHHHhc
Confidence 246999999999998765
No 22
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=7.3e-37 Score=340.55 Aligned_cols=276 Identities=38% Similarity=0.683 Sum_probs=214.6
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccC-CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCcc
Q 011393 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (487)
Q Consensus 207 ~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~-~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l 285 (487)
....+.++|++++|++.+++.|.+.+.++..++..+.... .++.++||+||||||||+||+++|++++.+|+.++++++
T Consensus 468 ~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 547 (806)
T 1ypw_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSS
T ss_pred cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHh
Confidence 4456789999999999999999999999999888877653 667899999999999999999999999999999999999
Q ss_pred chhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 011393 286 TSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE---NDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 362 (487)
Q Consensus 286 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~ 362 (487)
.+.|+|+.+..++.+|..++...|+||||||||.|+..+.... .....+++++||..|++.... .+++||+|||.
T Consensus 548 ~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~--~~v~vI~tTN~ 625 (806)
T 1ypw_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNR 625 (806)
T ss_dssp TTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBS
T ss_pred hhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc--CCeEEEEecCC
Confidence 9999999999999999999999999999999999998876432 335678899999999988643 45899999999
Q ss_pred CCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhcc
Q 011393 363 PQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 440 (487)
Q Consensus 363 ~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~ 440 (487)
++.||++++| ||+..+++++|+.++|.+||+.++.+.++. .+.++..|+..+.||+++||..+|++|++.|+++...
T Consensus 626 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~ 704 (806)
T 1ypw_A 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 704 (806)
T ss_dssp CGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC--
T ss_pred cccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCC-cccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999877654 5678889999999999999999999999999887532
Q ss_pred chh--------------ccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhC
Q 011393 441 NIL--------------TVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFG 485 (487)
Q Consensus 441 ~~~--------------~~~~~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~g 485 (487)
... .........|+.+||.+|++..+|++++++++.|++|.++|+
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~ 763 (806)
T 1ypw_A 705 SEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 763 (806)
T ss_dssp ----------------------CCTTTTTTSSCCCCCC---------------------
T ss_pred HHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 100 001122457999999999999999999999999999998875
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=6.3e-33 Score=269.01 Aligned_cols=244 Identities=34% Similarity=0.581 Sum_probs=191.0
Q ss_pred CCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhc
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW 289 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~ 289 (487)
|+++|++|+|++.+++.|.+++.. ...++.+... ..+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 568999999999999999998765 4444444433 35678999999999999999999999999999999999999989
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc----chHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 011393 290 VGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE----NDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE 365 (487)
Q Consensus 290 ~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ 365 (487)
.+.....++.+|..+....|+||||||+|.+...+.... .......+..++..+++... ...++||++||.++.
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADI 157 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhh
Confidence 999999999999999988999999999999987654321 22234566788888887643 345899999999999
Q ss_pred CCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChh-hHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccch
Q 011393 366 LDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGG-DLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNI 442 (487)
Q Consensus 366 ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~-~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~ 442 (487)
+++++++ ||+..++++.|+.++|.+|++.++...++..+.. .+..++..+.||+++||..+|++|+..++++.
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~---- 233 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG---- 233 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC---------
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 9999999 9999999999999999999999999887765544 45889999999999999999999999887652
Q ss_pred hccccccCCCCcHHHHHHHHHhhCCC
Q 011393 443 LTVKANQLRPLRYEDFQKAMAVIRPS 468 (487)
Q Consensus 443 ~~~~~~~~~~l~~~df~~al~~~~ps 468 (487)
...|+.+||..|+.++.++
T Consensus 234 -------~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 234 -------HTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp ----------CCBCCHHHHHHHHHHH
T ss_pred -------CCCCCHHHHHHHHHHhccC
Confidence 2458889999999887653
No 24
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.97 E-value=9.5e-31 Score=253.20 Aligned_cols=242 Identities=38% Similarity=0.639 Sum_probs=197.6
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~ 284 (487)
++...|+++|++++|++.++..+.+.+... ..+..+... ...+++++|+||||||||+|+++++..++..++.+++.+
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~ 84 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 84 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHH
Confidence 456778999999999999999999887653 334444443 345678999999999999999999999999999999988
Q ss_pred cchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 011393 285 LTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMAN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 361 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn 361 (487)
+...+.+.....+..+|+.+....|+++||||+|.+...+... ......+.+.+++..|++... ...++++++||
T Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~ 162 (254)
T 1ixz_A 85 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATN 162 (254)
T ss_dssp HHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEES
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccC
Confidence 8877888888888999999877789999999999998665421 233445677888999987654 34488999999
Q ss_pred CCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhc
Q 011393 362 KPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG 439 (487)
Q Consensus 362 ~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~ 439 (487)
.|+.+|+++++ ||+..+.++.|+.++|.+||+.++....+. .+.++..++..+.||+++||.++|++|+..+.++.
T Consensus 163 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~- 240 (254)
T 1ixz_A 163 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREG- 240 (254)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-
T ss_pred CchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 99999999998 899999999999999999999988765443 45679999999999999999999999999887642
Q ss_pred cchhccccccCCCCcHHHHHHHH
Q 011393 440 TNILTVKANQLRPLRYEDFQKAM 462 (487)
Q Consensus 440 ~~~~~~~~~~~~~l~~~df~~al 462 (487)
...|+.+||.+|+
T Consensus 241 ----------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 241 ----------RRKITMKDLEEAA 253 (254)
T ss_dssp ----------CSSBCHHHHHHHT
T ss_pred ----------CCCcCHHHHHHHh
Confidence 2469999999875
No 25
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.97 E-value=3e-31 Score=278.77 Aligned_cols=244 Identities=37% Similarity=0.625 Sum_probs=206.4
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchh
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~ 288 (487)
.++++|+||+|+++++..|.+.+.. ...+..+... ...++++||+||||||||+||+++|.+++.+|+.++++++...
T Consensus 25 ~~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 25 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 3789999999999999999998765 3444444444 3557889999999999999999999999999999999999988
Q ss_pred ccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 011393 289 WVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMAN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE 365 (487)
Q Consensus 289 ~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ 365 (487)
+.+.....++.+|+.+....|+|+||||||.+...+... ......+.+++++..|++... ...++|+++||.|+.
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~ 181 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 181 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGG
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCChhh
Confidence 999888899999998877789999999999998766431 234456778899999997754 345899999999999
Q ss_pred CCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchh
Q 011393 366 LDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL 443 (487)
Q Consensus 366 ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~ 443 (487)
||++++| ||+..+.+++|+.++|.+||+.++++..+. ++.++..|+..+.||+++||.++|++|+..+.++
T Consensus 182 LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~-~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~------ 254 (499)
T 2dhr_A 182 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAARE------ 254 (499)
T ss_dssp SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCC-CSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT------
T ss_pred cCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 9999998 899999999999999999999988765443 4567999999999999999999999999887553
Q ss_pred ccccccCCCCcHHHHHHHHHhhCCC
Q 011393 444 TVKANQLRPLRYEDFQKAMAVIRPS 468 (487)
Q Consensus 444 ~~~~~~~~~l~~~df~~al~~~~ps 468 (487)
....|+.+||.+|+.++.+.
T Consensus 255 -----~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 255 -----GRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp -----CCSSCCSHHHHHHHHHHTTC
T ss_pred -----CCCccCHHHHHHHHHHHhcc
Confidence 12468999999999988654
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.97 E-value=8.5e-33 Score=269.55 Aligned_cols=252 Identities=37% Similarity=0.597 Sum_probs=203.6
Q ss_pred cCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccc
Q 011393 208 DRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (487)
Q Consensus 208 ~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~ 286 (487)
.++|+++|++|+|++.+++.|.+.+.. +..+..+... ..+++++||+||||||||++|+++|++++.+++.+++.++.
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 457889999999999999999998764 5556655543 35567899999999999999999999999999999999998
Q ss_pred hhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc----chHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 011393 287 SKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE----NDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 362 (487)
Q Consensus 287 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~ 362 (487)
..+.+.....++.+|..+....|+||||||+|.|...+..+. .....+.+..|+..+++... ....++||+|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~ttn~ 160 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATNR 160 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC-SCSCCEEEECBSC
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc-CCCCEEEEEecCC
Confidence 888888888888899999888999999999999977642211 11112345667777776543 2345899999999
Q ss_pred CCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhcc
Q 011393 363 PQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 440 (487)
Q Consensus 363 ~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~ 440 (487)
++.+++++++ ||...+.++.|+.++|.++|+.++...++. ++.++..|+..+.||+++||..+|+.|+..+.++
T Consensus 161 ~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~--- 236 (268)
T 2r62_A 161 PEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAALLAGRN--- 236 (268)
T ss_dssp CTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS---
T ss_pred chhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---
Confidence 9999999999 999999999999999999999999876544 5566888999999999999999999999887443
Q ss_pred chhccccccCCCCcHHHHHHHHHhhCCCCCHHH
Q 011393 441 NILTVKANQLRPLRYEDFQKAMAVIRPSLNKSK 473 (487)
Q Consensus 441 ~~~~~~~~~~~~l~~~df~~al~~~~ps~s~~~ 473 (487)
....|+.+||.+++..+.|+...+.
T Consensus 237 --------~~~~i~~~~~~~a~~~~~~~~~~~~ 261 (268)
T 2r62_A 237 --------NQKEVRQQHLKEAVERGIAGLEKKL 261 (268)
T ss_dssp --------CCCSCCHHHHHTSCTTCCCCCC---
T ss_pred --------ccCCcCHHHHHHHHHHHhhcchhhh
Confidence 1246999999999999998776543
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=3e-29 Score=246.09 Aligned_cols=242 Identities=38% Similarity=0.639 Sum_probs=196.7
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc
Q 011393 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (487)
Q Consensus 206 ~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~ 284 (487)
++...|+++|++|+|++++++.+.+.+... ..+..+... ...+++++|+||||||||+|+++++..++..++.+++.+
T Consensus 30 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~ 108 (278)
T 1iy2_A 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 108 (278)
T ss_dssp CBCCCCCCCGGGSSSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHH
Confidence 344558899999999999999999887643 333444433 344578999999999999999999999999999999988
Q ss_pred cchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 011393 285 LTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMAN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 361 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn 361 (487)
+...+.+.....+..+|+.+....|+++||||+|.+...+... ........+.+++..|++... ...++++++||
T Consensus 109 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~ 186 (278)
T 1iy2_A 109 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATN 186 (278)
T ss_dssp HHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEES
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecC
Confidence 8877778788888999999887889999999999997654321 123345667888888887653 34488999999
Q ss_pred CCCCCCHHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhc
Q 011393 362 KPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG 439 (487)
Q Consensus 362 ~~~~ld~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~ 439 (487)
.|+.+|+++++ ||+..++++.|+.++|.+||+.+++...+. .+.++..++..+.|++++||..+|++|+..+.++.
T Consensus 187 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~- 264 (278)
T 1iy2_A 187 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREG- 264 (278)
T ss_dssp CTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-
T ss_pred CchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-
Confidence 99999999998 899999999999999999999988765433 45679999999999999999999999998886641
Q ss_pred cchhccccccCCCCcHHHHHHHH
Q 011393 440 TNILTVKANQLRPLRYEDFQKAM 462 (487)
Q Consensus 440 ~~~~~~~~~~~~~l~~~df~~al 462 (487)
...|+.+||.+|+
T Consensus 265 ----------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 265 ----------RRKITMKDLEEAA 277 (278)
T ss_dssp ----------CCSBCHHHHHHHT
T ss_pred ----------CCCcCHHHHHHHh
Confidence 2469999999876
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=6.1e-28 Score=268.77 Aligned_cols=259 Identities=37% Similarity=0.584 Sum_probs=225.9
Q ss_pred CCCCCCcccccChHHHHHHHHHHhhccccChhhhhcc-CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch
Q 011393 209 RSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (487)
Q Consensus 209 ~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~ 287 (487)
..++++|+||+|++.+++.|.+++.+|+.++++|..+ ..++.++||+||||||||+||+++|.+++.+++.+++.++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 4567999999999999999999999999999999876 477889999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 011393 288 KWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELD 367 (487)
Q Consensus 288 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld 367 (487)
.+.++.+..++.+|..+....|++|||||+|.+++.+.....+...++..+++..+++.... ..+++|++||.++.++
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSID 354 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT--SCCEEEEECSCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccc--ccEEEecccCCchhcC
Confidence 99999999999999999999999999999999998887666777788999999999987654 4589999999999999
Q ss_pred HHHHc--ccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchh--
Q 011393 368 DAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL-- 443 (487)
Q Consensus 368 ~al~~--Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~-- 443 (487)
+++++ ||...+.++.|+.++|.+|++.++.+..+. .+.++..++..+.||+++|+..+|.+|+..++++......
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 99998 999999999999999999999988876554 5668899999999999999999999999998886543111
Q ss_pred ----ccccccCCCCcHHHHHHHHHhhCCCCC
Q 011393 444 ----TVKANQLRPLRYEDFQKAMAVIRPSLN 470 (487)
Q Consensus 444 ----~~~~~~~~~l~~~df~~al~~~~ps~s 470 (487)
.........++.+||..++....|+..
T Consensus 434 ~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~ 464 (806)
T 1ypw_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp HHHCCHHHHTTCCCCTTHHHHHHHHSCCCCC
T ss_pred hhccchhhhhhhhhhhhhhhccccccCchhh
Confidence 001122355788999999998887543
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.93 E-value=7e-26 Score=223.90 Aligned_cols=173 Identities=20% Similarity=0.255 Sum_probs=130.9
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccchhHHHHHHHHHHH----HhcCCcEEEechhhhhh
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVA----ISRQPCVIFIDEIDSIM 321 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~Il~IDEiD~l~ 321 (487)
.+++.++|||||||||||+||+++|++++.+|+.++++++.+.|+|..+..++.+|..+ +...|+||||||||.++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 45678999999999999999999999999999999999999999999999999999888 46789999999999998
Q ss_pred ccCCCCcc--hHHHHHHHHHHHHhcCCC---------CCCCCcEEEEEecCCCCCCCHHHHc--ccccEEEccCCCHHHH
Q 011393 322 STRMANEN--DASRRLKSEFLIQFDGVT---------SNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVR 388 (487)
Q Consensus 322 ~~~~~~~~--~~~~~~~~~ll~~l~~~~---------~~~~~~vivI~ttn~~~~ld~al~~--Rf~~~i~i~~Pd~~~r 388 (487)
+.+.+... .....+...|+..|++.. .....+++||+|||.++.++++++| ||+..++ .|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 75432211 124567788888887443 1123468999999999999999997 8887776 5799999
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHH
Q 011393 389 RLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQA 425 (487)
Q Consensus 389 ~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~ 425 (487)
.+|++.++...++ +++.++..+.||++++|..
T Consensus 191 ~~Il~~~~~~~~~-----~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 191 IGVCTGIFRTDNV-----PAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHGGGCC-----CHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHhccCCCC-----CHHHHHHHhCCCCcccHHH
Confidence 9999998876543 3667778888888887753
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.91 E-value=1.4e-24 Score=215.55 Aligned_cols=235 Identities=18% Similarity=0.208 Sum_probs=179.2
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhh----ccCCCCceeEEeCCCCCcHHHHHHHHHHHc-------CCeEEEEecCc
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFT----GLRRPARGLLLFGPPGNGKTMLAKAVASES-------QATFFNVSASS 284 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~----~~~~~~~~iLL~GppGtGKT~la~aiA~~~-------~~~~~~v~~~~ 284 (487)
.+|+|++.+++.|.+++..+.. +..+. ....++.++||+||||||||++|+++|+.+ ..+++.+++.+
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred HHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 3799999999999998876543 22221 113556789999999999999999999987 34899999999
Q ss_pred cchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 011393 285 LTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ 364 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~ 364 (487)
+...+.|.....+..+|..+ .++||||||+|.|+..+.+ .......+..|+..|+.. ..+++||+++|.+.
T Consensus 110 l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 110 LVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENN----RDDLVVILAGYADR 180 (309)
T ss_dssp TCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC----TTTCEEEEEECHHH
T ss_pred hhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcC----CCCEEEEEeCChHH
Confidence 99999999888888888876 5689999999999865432 223456777888888743 23478888887543
Q ss_pred -----CCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHH-------cCCCCHHHHHHHHHHHHH
Q 011393 365 -----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRE-------TEGYSGSDLQALCEEAAM 432 (487)
Q Consensus 365 -----~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~-------t~G~s~~dL~~lv~~A~~ 432 (487)
.+++++++||...+.|+.|+.+++..|++.++...++.++++.+..++.. .+..+++++.++++.|+.
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 35799999998899999999999999999999998888899999999887 444568999999999998
Q ss_pred HhHHhhccc-hhccccccCCCCcHHHHHH
Q 011393 433 MPIRELGTN-ILTVKANQLRPLRYEDFQK 460 (487)
Q Consensus 433 ~a~~~~~~~-~~~~~~~~~~~l~~~df~~ 460 (487)
.+..++... .......+...++.+||..
T Consensus 261 ~~~~r~~~~~~~~~~~~~l~~i~~~d~~~ 289 (309)
T 3syl_A 261 RQANRLFTASSGPLDARALSTIAEEDIRA 289 (309)
T ss_dssp HHHHHHHHC---CEEHHHHHEECHHHHHT
T ss_pred HHHHHHHhccCCCCCHHHHhhccHHHhcc
Confidence 776665331 1111122233456666654
No 31
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.91 E-value=2.4e-23 Score=211.71 Aligned_cols=224 Identities=18% Similarity=0.212 Sum_probs=168.1
Q ss_pred cCCCCCC-cccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC--eEEEEecCc
Q 011393 208 DRSPSVK-WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA--TFFNVSASS 284 (487)
Q Consensus 208 ~~~~~~~-~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~--~~~~v~~~~ 284 (487)
+++++.. |++++|++.+++.+..+.... .....+++++||+||||||||++|+++|++++. +++.+++..
T Consensus 35 ~~~~p~~~~~~ivG~~~~~~~l~~l~~~~-------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 35 DALEPRQASQGMVGQLAARRAAGVVLEMI-------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp TTSCBCSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred cccCcCcchhhccChHHHHHHHHHHHHHH-------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 3444454 999999999998876555321 122344679999999999999999999999875 788888766
Q ss_pred cchhccch-------------------------------------------------hHHHHHHHHHHHHh-----c---
Q 011393 285 LTSKWVGE-------------------------------------------------GEKLVRTLFMVAIS-----R--- 307 (487)
Q Consensus 285 l~~~~~g~-------------------------------------------------~~~~i~~~f~~a~~-----~--- 307 (487)
+...+.+. ....++..+..+.. .
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~ 187 (368)
T 3uk6_A 108 IFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAE 187 (368)
T ss_dssp GSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC--
T ss_pred hhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccc
Confidence 43332221 23334444443322 1
Q ss_pred -CCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEec-----------CCCCCCCHHHHcccc
Q 011393 308 -QPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT-----------NKPQELDDAVLRRLV 375 (487)
Q Consensus 308 -~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~tt-----------n~~~~ld~al~~Rf~ 375 (487)
.|+||||||+|.|. ...++.|+..++.. ...++++++. |.+..+++++++||.
T Consensus 188 ~~~~vl~IDEi~~l~-----------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~ 252 (368)
T 3uk6_A 188 IIPGVLFIDEVHMLD-----------IESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLL 252 (368)
T ss_dssp -CBCEEEEESGGGSB-----------HHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEE
T ss_pred ccCceEEEhhccccC-----------hHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHhhcc
Confidence 26899999999982 34556777777542 2335555554 357889999999998
Q ss_pred cEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcH
Q 011393 376 KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRY 455 (487)
Q Consensus 376 ~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~ 455 (487)
. +.+++|+.+++.++++..+...++.++++.++.|+..+++.+++++..+|+.|+..|..+ +...|+.
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~-----------~~~~It~ 320 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR-----------KGTEVQV 320 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-----------TCSSBCH
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-----------CCCCCCH
Confidence 5 899999999999999999998888899999999999999558999999999999888654 2356999
Q ss_pred HHHHHHHHhh
Q 011393 456 EDFQKAMAVI 465 (487)
Q Consensus 456 ~df~~al~~~ 465 (487)
+|+.+++..+
T Consensus 321 ~~v~~a~~~~ 330 (368)
T 3uk6_A 321 DDIKRVYSLF 330 (368)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.90 E-value=4.1e-22 Score=200.44 Aligned_cols=225 Identities=14% Similarity=0.141 Sum_probs=168.9
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~ 284 (487)
.|.+++++.+|++++|.+.+++.|..++..... ...+..++||+||||||||++|+++|++++.+|+.+++..
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 577889999999999999999999998864321 1245578999999999999999999999999999999876
Q ss_pred cchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC--------------CC
Q 011393 285 LTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS--------------NP 350 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------------~~ 350 (487)
+.. ...+..++.. ...+++|||||||.+. ...+..|+..++.... ..
T Consensus 91 ~~~------~~~~~~~~~~--~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 91 IEK------SGDLAAILTN--LSEGDILFIDEIHRLS-----------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp CCS------HHHHHHHHHT--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred ccc------hhHHHHHHHh--ccCCCEEEEechhhcC-----------HHHHHHHHHHHHhccchhhcccCccccceecC
Confidence 632 1223333322 3467899999999883 3445566666654321 00
Q ss_pred CCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 011393 351 NDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEA 430 (487)
Q Consensus 351 ~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A 430 (487)
..++++|++||....+++++++||+..+.++.|+.+++..++..++...++.++++.++.|+..+.| +++++.++++.+
T Consensus 152 ~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~ 230 (338)
T 3pfi_A 152 LPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRV 230 (338)
T ss_dssp CCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHH
Confidence 1147899999999999999999998899999999999999999999988888899999999996655 789999999988
Q ss_pred HHHhHHhhccchhccccccCCCCcHHHHHHHHHhhCC
Q 011393 431 AMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRP 467 (487)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~p 467 (487)
...+.... ...|+.+++..++.....
T Consensus 231 ~~~a~~~~-----------~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 231 RDFADVND-----------EEIITEKRANEALNSLGV 256 (338)
T ss_dssp HHHHHHTT-----------CSEECHHHHHHHHHHHTC
T ss_pred HHHHHhhc-----------CCccCHHHHHHHHHHhCC
Confidence 76553221 133667777777665443
No 33
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.89 E-value=2.1e-22 Score=211.05 Aligned_cols=247 Identities=18% Similarity=0.208 Sum_probs=182.3
Q ss_pred CCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC--CeEEEEecCccchh
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ--ATFFNVSASSLTSK 288 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~--~~~~~v~~~~l~~~ 288 (487)
|...|++|+|++++++.+..++... .....+++++|||||||||||++|+++|++++ .+|+.++++++.+.
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~-------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI-------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH-------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 4567999999999999998877422 12334678999999999999999999999999 99999999999999
Q ss_pred ccchhHHHHHHHHHHH---HhcCCcEEEechhhhhhccCCCCcchH----------------------------------
Q 011393 289 WVGEGEKLVRTLFMVA---ISRQPCVIFIDEIDSIMSTRMANENDA---------------------------------- 331 (487)
Q Consensus 289 ~~g~~~~~i~~~f~~a---~~~~p~Il~IDEiD~l~~~~~~~~~~~---------------------------------- 331 (487)
+.|+++. ++.+|..+ +...|+||||||+|.+++.+.......
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 9999987 89999998 778899999999999986553220000
Q ss_pred --------------------------------------------------------------------------------
Q 011393 332 -------------------------------------------------------------------------------- 331 (487)
Q Consensus 332 -------------------------------------------------------------------------------- 331 (487)
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~ggadl~~l~~~i 263 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQL 263 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHHHHHHTC----------------
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHhhh
Confidence
Q ss_pred --------------------------------------------HHHHHHHHHHHhcCCCCCCCCcEEEEEe--------
Q 011393 332 --------------------------------------------SRRLKSEFLIQFDGVTSNPNDLVIVMGA-------- 359 (487)
Q Consensus 332 --------------------------------------------~~~~~~~ll~~l~~~~~~~~~~vivI~t-------- 359 (487)
.....+.|+..|+ .+..+++|+++
T Consensus 264 ~~p~~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~lE----e~~~~~~il~tn~~~~~i~ 339 (456)
T 2c9o_A 264 MKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALE----SSIAPIVIFASNRGNCVIR 339 (456)
T ss_dssp -------------CHHHHHHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHHTT----STTCCEEEEEECCSEEECB
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhccccccceEEEEechhhcCHHHHHHHHHHhh----ccCCCEEEEecCCcccccc
Confidence 0012333333333 22334555555
Q ss_pred -cC---CCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHc-CCCCHHHHHHHHHHHHHHh
Q 011393 360 -TN---KPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRET-EGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 360 -tn---~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t-~G~s~~dL~~lv~~A~~~a 434 (487)
++ .+..+++.+++||.. +.++.|+.++..++++..+...++.++++.+..++..+ .| +++....+++.|...|
T Consensus 340 ~~~~~~~~~~l~~~i~sR~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A 417 (456)
T 2c9o_A 340 GTEDITSPHGIPLDLLDRVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLA 417 (456)
T ss_dssp TTSSCEEETTCCHHHHTTEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHH
T ss_pred ccccccccccCChhHHhhcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence 32 277899999999996 79999999999999999888777888999999999998 66 7888888888887776
Q ss_pred HHhhccchhccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 011393 435 IRELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREF 484 (487)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ps~s~~~i~~~~~w~~~~ 484 (487)
..+ +...|+.+|+.+++.-+-- .+..++-+.+|..+|
T Consensus 418 ~~~-----------~~~~v~~~~v~~~~~~~~d--~~~~~~~~~~~~~~~ 454 (456)
T 2c9o_A 418 KIN-----------GKDSIEKEHVEEISELFYD--AKSSAKILADQQDKY 454 (456)
T ss_dssp HHT-----------TCSSBCHHHHHHHHHHSCC--HHHHHHHHHC-----
T ss_pred hhc-----------CCCccCHHHHHHHHHHhcC--hHHHHHHHHHHHHhc
Confidence 543 2246999999999876432 123334445555554
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.88 E-value=3.8e-21 Score=191.93 Aligned_cols=222 Identities=18% Similarity=0.198 Sum_probs=165.3
Q ss_pred cCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch
Q 011393 208 DRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (487)
Q Consensus 208 ~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~ 287 (487)
+++++.+|++++|.+.+++.|..++..... ...++.++||+||||||||++|++++++++.+|+.+++..+..
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 467888999999999999999988753211 1234578999999999999999999999999999999877642
Q ss_pred hccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC-------C-C------CCCc
Q 011393 288 KWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT-------S-N------PNDL 353 (487)
Q Consensus 288 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~-~------~~~~ 353 (487)
...+...+..+ ...+++|||||+|.+.. ..+..|+..++... . . ...+
T Consensus 77 ------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~-----------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 ------PGDLAAILANS-LEEGDILFIDEIHRLSR-----------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ------HHHHHHHHTTT-CCTTCEEEETTTTSCCH-----------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ------hHHHHHHHHHh-ccCCCEEEEECCccccc-----------chHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 11222222211 24678999999998832 23344444443221 0 0 0124
Q ss_pred EEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 011393 354 VIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMM 433 (487)
Q Consensus 354 vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~ 433 (487)
+++|++||.+..+++++++||...+.++.|+.+++..++..++...+..++++.++.|+..+.| +++++..+++.+...
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDF 217 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTT
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 7899999999999999999998889999999999999999999888888999999999999876 688999999887655
Q ss_pred hHHhhccchhccccccCCCCcHHHHHHHHHhhC
Q 011393 434 PIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 434 a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ 466 (487)
+... ....|+.+++..++....
T Consensus 218 a~~~-----------~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 218 AQVA-----------GEEVITRERALEALAALG 239 (324)
T ss_dssp STTT-----------SCSCCCHHHHHHHHHHHT
T ss_pred HHHh-----------cCCCCCHHHHHHHHHHhc
Confidence 4221 123467777777766544
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.87 E-value=5.5e-22 Score=196.38 Aligned_cols=246 Identities=20% Similarity=0.287 Sum_probs=173.4
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhcc--CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch-hccch
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGL--RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVGE 292 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~-~~~g~ 292 (487)
++|+|++.+++.|...+..+.....+.... ..++.++||+||||||||++|+++|+.++.+++.++++.+.. .+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 459999999999998886543332221111 234678999999999999999999999999999999998865 45553
Q ss_pred h-HHHHHHHHHHH-----HhcCCcEEEechhhhhhccCCCCcchH-HHHHHHHHHHHhcCCCC------CCCCcEEEEEe
Q 011393 293 G-EKLVRTLFMVA-----ISRQPCVIFIDEIDSIMSTRMANENDA-SRRLKSEFLIQFDGVTS------NPNDLVIVMGA 359 (487)
Q Consensus 293 ~-~~~i~~~f~~a-----~~~~p~Il~IDEiD~l~~~~~~~~~~~-~~~~~~~ll~~l~~~~~------~~~~~vivI~t 359 (487)
. ...++.++..+ ....++||||||+|.+.........+. ...+++.|+..|++... .+...++||++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 2 34556655422 112468999999999977654333333 33456778888875310 01234778877
Q ss_pred ----cCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHH-----------HhccCC--CCCChhhHHHHHHHcC------
Q 011393 360 ----TNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKH-----------KLKGQA--FSLPGGDLERLVRETE------ 416 (487)
Q Consensus 360 ----tn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~-----------~l~~~~--~~l~~~~l~~La~~t~------ 416 (487)
++.+..+++++++||...+.|+.|+.+++.+|++. .+...+ +.++++.++.|+..++
T Consensus 175 ~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 254 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKT 254 (310)
T ss_dssp ECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHS
T ss_pred CCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccc
Confidence 46778899999999998899999999999999983 122223 4578999999999884
Q ss_pred -CCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhC
Q 011393 417 -GYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 417 -G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ 466 (487)
+.+.+.+..+|+.++..+.-+... .......|+.+|+.+++....
T Consensus 255 ~~g~~R~l~~~l~~~~~~~~~~~~~-----~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 255 ENIGARRLHTVMERLMDKISFSASD-----MNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp CCCTTHHHHHHHHHHSHHHHHHGGG-----CTTCEEEECHHHHHHHTCSSS
T ss_pred cccCcHHHHHHHHHHHHhhhcCCcc-----ccCCEEEEeeHHHHHHHHhhh
Confidence 458899999999887655433211 011112489999999987653
No 36
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.86 E-value=1.7e-20 Score=175.39 Aligned_cols=208 Identities=18% Similarity=0.201 Sum_probs=159.0
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEE
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFN 279 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~ 279 (487)
.|.+++++..|++++|.+.+++.|.+++.. ....+++|+||||||||++|+++++++ ...++.
T Consensus 6 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 73 (226)
T 2chg_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (226)
T ss_dssp CHHHHTSCSSGGGCCSCHHHHHHHHHHHHT------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEE
T ss_pred hHHHhcCCCCHHHHcCcHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEE
Confidence 467788999999999999999999988852 122359999999999999999999975 456788
Q ss_pred EecCccchhccchhHHHHHHHHHHHH------hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCc
Q 011393 280 VSASSLTSKWVGEGEKLVRTLFMVAI------SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDL 353 (487)
Q Consensus 280 v~~~~l~~~~~g~~~~~i~~~f~~a~------~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 353 (487)
+++...... ..+...+.... ...+.||||||+|.+.. .....|+..++.. ...
T Consensus 74 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~----~~~ 132 (226)
T 2chg_A 74 MNASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMY----SKS 132 (226)
T ss_dssp EETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHT----TTT
T ss_pred eccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----------HHHHHHHHHHHhc----CCC
Confidence 887654321 12222222221 24678999999999832 2234455555432 234
Q ss_pred EEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 011393 354 VIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMM 433 (487)
Q Consensus 354 vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~ 433 (487)
+.+|+++|.+..+++++.+||. .+.++.|+.++...++...+...+..+++..+..|+..+.| +++.+.++++.++..
T Consensus 133 ~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~ 210 (226)
T 2chg_A 133 CRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAI 210 (226)
T ss_dssp EEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred CeEEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc
Confidence 7788889999999999999998 89999999999999999998877788889999999998876 678888887777654
Q ss_pred hHHhhccchhccccccCCCCcHHHHHHHHH
Q 011393 434 PIRELGTNILTVKANQLRPLRYEDFQKAMA 463 (487)
Q Consensus 434 a~~~~~~~~~~~~~~~~~~l~~~df~~al~ 463 (487)
+ ..|+.+|+.+++.
T Consensus 211 ~----------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 211 G----------------EVVDADTIYQITA 224 (226)
T ss_dssp C----------------SCBCHHHHHHHHH
T ss_pred C----------------ceecHHHHHHHhc
Confidence 3 3588999998875
No 37
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.86 E-value=7.3e-21 Score=198.19 Aligned_cols=221 Identities=20% Similarity=0.272 Sum_probs=163.1
Q ss_pred hccccCCCCCCcccccChHHHH---HHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 204 TAIVDRSPSVKWEDVAGLEKAK---QALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 204 ~~~~~~~~~~~~~di~G~~~~k---~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
..|.+++++.+|++++|++.++ ..|...+.. .. ..++|||||||||||++|+++|+.++.+|+.+
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~-~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------GH-LHSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC-CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------CC-CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 3567778899999999999999 777777741 12 25899999999999999999999999999999
Q ss_pred ecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 011393 281 SASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIV 356 (487)
Q Consensus 281 ~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~viv 356 (487)
++.... ...++.++..+. ...++||||||||.|.. ..+..|+..++. ..+++
T Consensus 82 ~a~~~~-------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~-----------~~q~~LL~~le~------~~v~l 137 (447)
T 3pvs_A 82 SAVTSG-------VKEIREAIERARQNRNAGRRTILFVDEVHRFNK-----------SQQDAFLPHIED------GTITF 137 (447)
T ss_dssp ETTTCC-------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT------TSCEE
T ss_pred EeccCC-------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH-----------HHHHHHHHHHhc------CceEE
Confidence 875432 233455555443 34678999999999832 234556777764 22566
Q ss_pred EEec--CCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc-------CCCCCChhhHHHHHHHcCCCCHHHHHHHH
Q 011393 357 MGAT--NKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG-------QAFSLPGGDLERLVRETEGYSGSDLQALC 427 (487)
Q Consensus 357 I~tt--n~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~-------~~~~l~~~~l~~La~~t~G~s~~dL~~lv 427 (487)
|++| |....+++++++||. .+.++.|+.++...++...+.. .++.++++.++.|+..+.| +.+.+.+++
T Consensus 138 I~att~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~L 215 (447)
T 3pvs_A 138 IGATTENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTL 215 (447)
T ss_dssp EEEESSCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHH
T ss_pred EecCCCCcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHH
Confidence 6655 555689999999998 6889999999999999999876 5566889999999999776 788898999
Q ss_pred HHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhCCCCCH
Q 011393 428 EEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNK 471 (487)
Q Consensus 428 ~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ps~s~ 471 (487)
+.++..+... ..+...|+.+++.+++........+
T Consensus 216 e~a~~~a~~~---------~~~~~~It~e~v~~~l~~~~~~~dk 250 (447)
T 3pvs_A 216 EMMADMAEVD---------DSGKRVLKPELLTEIAGERSARFDN 250 (447)
T ss_dssp HHHHHHSCBC---------TTSCEECCHHHHHHHHTCCCCC---
T ss_pred HHHHHhcccc---------cCCCCccCHHHHHHHHhhhhhccCC
Confidence 9887654210 0122458899999888765554443
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.85 E-value=2e-21 Score=207.56 Aligned_cols=234 Identities=20% Similarity=0.225 Sum_probs=160.2
Q ss_pred CCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch-----
Q 011393 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS----- 287 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~----- 287 (487)
.-+++++|++++++.+.+.+........ .++.++||+||||||||+||+++|..++.++..+++..+..
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~~~~~------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQKLTKS------LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHSSS------CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhccc------CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 3467899999999999887764433221 25678999999999999999999999999999999876543
Q ss_pred ----hccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCC-----------CCC
Q 011393 288 ----KWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN-----------PND 352 (487)
Q Consensus 288 ----~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----------~~~ 352 (487)
.|+|.....+...|..+....| ||||||+|.+...+. ...+..|+..|+..... ...
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~ 223 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-------GDPSSAMLEVLDPEQNSSFSDHYIEETFDLS 223 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBCS
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-------cCHHHHHHHHHhhhhcceeecccCCeeeccc
Confidence 4666666677777777655555 999999999965431 12345666666532211 014
Q ss_pred cEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhc-----cC-----CCCCChhhHHHHHHH-cCCCCHH
Q 011393 353 LVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK-----GQ-----AFSLPGGDLERLVRE-TEGYSGS 421 (487)
Q Consensus 353 ~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~-----~~-----~~~l~~~~l~~La~~-t~G~s~~ 421 (487)
+++||+|||.++.++++|++||. .|.++.|+.+++..|+..++. .. .+.+++..+..|+.. ++..+.+
T Consensus 224 ~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR 302 (543)
T 3m6a_A 224 KVLFIATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVR 302 (543)
T ss_dssp SCEEEEECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSH
T ss_pred ceEEEeccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchh
Confidence 58999999999999999999996 799999999999999998762 22 345678888888774 4445667
Q ss_pred HHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhC
Q 011393 422 DLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 422 dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ 466 (487)
+|++.++.++..+..+... .......|+.+|+.+++...+
T Consensus 303 ~L~~~i~~~~~~aa~~~~~-----~~~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 303 SLERQLAAICRKAAKAIVA-----EERKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHT-----TCCSCCEECTTTTHHHHCSCC
T ss_pred HHHHHHHHHHHHHHHHHHh-----cCCcceecCHHHHHHHhCCcc
Confidence 7777776666555443211 112234588899999886433
No 39
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.84 E-value=4.7e-21 Score=194.90 Aligned_cols=223 Identities=22% Similarity=0.312 Sum_probs=162.0
Q ss_pred cccChHHHHHHHHHHhhccccChhhh---hccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchh-ccch
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLF---TGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK-WVGE 292 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~---~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~-~~g~ 292 (487)
.|+|++.+++.|...+.......... .....++.++||+||||||||++|+++|+.++.+|+.++++++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 37999999999999885433222111 1123467899999999999999999999999999999999988744 7776
Q ss_pred h-HHHHHHHHHHH----HhcCCcEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcCCCCC---------------
Q 011393 293 G-EKLVRTLFMVA----ISRQPCVIFIDEIDSIMSTRMANE---NDASRRLKSEFLIQFDGVTSN--------------- 349 (487)
Q Consensus 293 ~-~~~i~~~f~~a----~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~--------------- 349 (487)
. ...+..++..+ ....++||||||+|.+...+.... ......+++.|+..|++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 56667777654 334578999999999987754432 222345889999999853110
Q ss_pred --CCCcEEEEEecCCC----------CC-----------------------------------CCHHHHcccccEEEccC
Q 011393 350 --PNDLVIVMGATNKP----------QE-----------------------------------LDDAVLRRLVKRIYVPL 382 (487)
Q Consensus 350 --~~~~vivI~ttn~~----------~~-----------------------------------ld~al~~Rf~~~i~i~~ 382 (487)
...++++|++++.. .. +.++|++||+..+.+++
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p 255 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE 255 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence 11234555555432 11 78999999999899999
Q ss_pred CCHHHHHHHHHH----Hh-------c--cCCCCCChhhHHHHHH--HcCCCCHHHHHHHHHHHHHHhHHhhc
Q 011393 383 PDENVRRLLLKH----KL-------K--GQAFSLPGGDLERLVR--ETEGYSGSDLQALCEEAAMMPIRELG 439 (487)
Q Consensus 383 Pd~~~r~~il~~----~l-------~--~~~~~l~~~~l~~La~--~t~G~s~~dL~~lv~~A~~~a~~~~~ 439 (487)
|+.+.+..|+.. ++ . ...+.++++.++.|+. ..+.+.+++|+++++.++..++.++.
T Consensus 256 l~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~ 327 (363)
T 3hws_A 256 LSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLP 327 (363)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcc
Confidence 999999998875 21 2 2234568899999996 45667789999999999998877653
No 40
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.84 E-value=1.7e-20 Score=177.57 Aligned_cols=209 Identities=23% Similarity=0.256 Sum_probs=157.4
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe--------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------- 276 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------- 276 (487)
.|.+++++..|++++|.+..++.|...+.. ...+..++|+||||+|||+++++++++++..
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~ 80 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 80 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 467788999999999999999999988842 2334579999999999999999999986432
Q ss_pred ----------------EEEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 277 ----------------FFNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 277 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
++.++... ......++.++.... ...+.+|||||+|.+. ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-----------~~~~ 143 (250)
T 1njg_A 81 GVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSF 143 (250)
T ss_dssp SCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-----------HHHH
T ss_pred cccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc-----------HHHH
Confidence 22222211 011223444444321 2357899999999872 2345
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
..|+..++.. ...+.+|++|+.+..+++++++|+. .+.++.|+.++..+++..++...+..+++..++.|++.+.
T Consensus 144 ~~l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~r~~-~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 218 (250)
T 1njg_A 144 NALLKTLEEP----PEHVKFLLATTDPQKLPVTILSRCL-QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE 218 (250)
T ss_dssp HHHHHHHHSC----CTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC----CCceEEEEEeCChHhCCHHHHHHhh-hccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 5666666532 3347888888888999999999974 7999999999999999999988888889999999999997
Q ss_pred CCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAM 462 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al 462 (487)
| +++.+..+++.|+..+ ...|+.+|+.+++
T Consensus 219 G-~~~~~~~~~~~~~~~~---------------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 219 G-SLRDALSLTDQAIASG---------------DGQVSTQAVSAML 248 (250)
T ss_dssp T-CHHHHHHHHHHHHTTT---------------TSSBCHHHHHHHS
T ss_pred C-CHHHHHHHHHHHHhcc---------------CceecHHHHHHHh
Confidence 7 8999999998885332 1258899988775
No 41
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.84 E-value=8.5e-20 Score=188.21 Aligned_cols=254 Identities=21% Similarity=0.310 Sum_probs=182.3
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccC--CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccch-hccch
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLR--RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVGE 292 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~--~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~-~~~g~ 292 (487)
++|+|++++|+.|...+..+.++..++.... .+++++||+||||||||++|+++|+.++.+|+.++++.+.. .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4799999999999999988776666555443 35689999999999999999999999999999999998887 48884
Q ss_pred -hHHHHHHHHHHHH------------------------------------------------------------------
Q 011393 293 -GEKLVRTLFMVAI------------------------------------------------------------------ 305 (487)
Q Consensus 293 -~~~~i~~~f~~a~------------------------------------------------------------------ 305 (487)
.+..++.+|..+.
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 5666666654431
Q ss_pred -------------------------------------------------------------------------hcCCcEE
Q 011393 306 -------------------------------------------------------------------------SRQPCVI 312 (487)
Q Consensus 306 -------------------------------------------------------------------------~~~p~Il 312 (487)
....+||
T Consensus 175 i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il 254 (444)
T 1g41_A 175 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV 254 (444)
T ss_dssp ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred EcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee
Confidence 0023489
Q ss_pred EechhhhhhccCCCCcchH-HHHHHHHHHHHhcCCCCC------CCCcEEEEEec----CCCCCCCHHHHcccccEEEcc
Q 011393 313 FIDEIDSIMSTRMANENDA-SRRLKSEFLIQFDGVTSN------PNDLVIVMGAT----NKPQELDDAVLRRLVKRIYVP 381 (487)
Q Consensus 313 ~IDEiD~l~~~~~~~~~~~-~~~~~~~ll~~l~~~~~~------~~~~vivI~tt----n~~~~ld~al~~Rf~~~i~i~ 381 (487)
|+||||.+.........+. ...++..||..|++.... ...+|++|||. +.|.++.|+|+.||..++.++
T Consensus 255 ~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~ 334 (444)
T 1g41_A 255 FIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELT 334 (444)
T ss_dssp EEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECC
T ss_pred eHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCC
Confidence 9999999986543223333 345778899999874211 23458888886 345557799999999889999
Q ss_pred CCCHHHHHHHHHH-----------Hh--ccCCCCCChhhHHHHHHH-------cCCCCHHHHHHHHHHHHHHhHHhhccc
Q 011393 382 LPDENVRRLLLKH-----------KL--KGQAFSLPGGDLERLVRE-------TEGYSGSDLQALCEEAAMMPIRELGTN 441 (487)
Q Consensus 382 ~Pd~~~r~~il~~-----------~l--~~~~~~l~~~~l~~La~~-------t~G~s~~dL~~lv~~A~~~a~~~~~~~ 441 (487)
.++.++..+|+.. .+ .+..+.++++.+..|++. |....++-|+.+++.++.....+....
T Consensus 335 ~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~ 414 (444)
T 1g41_A 335 ALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM 414 (444)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhcccc
Confidence 9999999999831 12 234455789999999874 455667888888887776665554221
Q ss_pred hhccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHH
Q 011393 442 ILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEEL 477 (487)
Q Consensus 442 ~~~~~~~~~~~l~~~df~~al~~~~ps~s~~~i~~~ 477 (487)
......|+.+++.+.+ .|.+..+++.+|
T Consensus 415 -----~~~~~~i~~~~v~~~l---~~~~~~~dl~~~ 442 (444)
T 1g41_A 415 -----NGQTVNIDAAYVADAL---GEVVENEDLSRF 442 (444)
T ss_dssp -----TTCEEEECHHHHHHHH---TTTTTCHHHHHH
T ss_pred -----CCCeEEEeHHHHHHhc---CccccCCChhcc
Confidence 1122357888887766 456667777666
No 42
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.84 E-value=2e-20 Score=186.97 Aligned_cols=193 Identities=16% Similarity=0.126 Sum_probs=146.1
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~ 284 (487)
.|+++|+|.+|++++|++.+++.|.+++. ....+..+|++||||||||++|+++|++++.+++.+++++
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence 58889999999999999999999999885 2344567888999999999999999999999999999877
Q ss_pred cchhccchhHHHHHHHHHHHHhc-----CCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 011393 285 LTSKWVGEGEKLVRTLFMVAISR-----QPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGA 359 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~~-----~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~t 359 (487)
.. ...++..+...... .+.||||||+|.+.+ ....+.|+..++.. ...+.+|++
T Consensus 84 ~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~----~~~~~iI~~ 142 (324)
T 3u61_B 84 CK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY----SSNCSIIIT 142 (324)
T ss_dssp CC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH----GGGCEEEEE
T ss_pred cC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC----CCCcEEEEE
Confidence 43 22334433332222 568999999999841 23445566655532 234678889
Q ss_pred cCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHH-------HhccCCCCCCh-hhHHHHHHHcCCCCHHHHHHHHHHHH
Q 011393 360 TNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKH-------KLKGQAFSLPG-GDLERLVRETEGYSGSDLQALCEEAA 431 (487)
Q Consensus 360 tn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~-------~l~~~~~~l~~-~~l~~La~~t~G~s~~dL~~lv~~A~ 431 (487)
||.+..+++++++||. .+.|+.|+.+++.++++. .+...++.+++ +.++.|+..+.|. .+++.+.++.++
T Consensus 143 ~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd-~R~a~~~L~~~~ 220 (324)
T 3u61_B 143 ANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPD-FRKTIGELDSYS 220 (324)
T ss_dssp ESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSC-TTHHHHHHHHHG
T ss_pred eCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCC-HHHHHHHHHHHh
Confidence 9999999999999997 699999999887655443 34556778888 9999999998774 444555555554
No 43
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.84 E-value=1.8e-20 Score=199.39 Aligned_cols=211 Identities=20% Similarity=0.224 Sum_probs=146.1
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccC-hhhhhccC----CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKR-RDLFTGLR----RPARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~-~~~~~~~~----~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
.|+++|+|.+|++|+|++.+++.|.+++...... +..+...+ .+++++||+||||||||++|+++|++++.+++.
T Consensus 28 lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 28 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 6899999999999999999999999998753221 12222111 245799999999999999999999999999999
Q ss_pred EecCccchhccchhHH-------HHHHHHHHH-----HhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC
Q 011393 280 VSASSLTSKWVGEGEK-------LVRTLFMVA-----ISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT 347 (487)
Q Consensus 280 v~~~~l~~~~~g~~~~-------~i~~~f~~a-----~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 347 (487)
++++++...+.....- .+..+|..+ ....++||||||+|.+.... ...+..|+..++.
T Consensus 108 in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~~~l~~L~~~l~~-- 177 (516)
T 1sxj_A 108 QNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RGGVGQLAQFCRK-- 177 (516)
T ss_dssp ECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TTHHHHHHHHHHH--
T ss_pred EeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------HHHHHHHHHHHHh--
Confidence 9998876543221100 012223222 12567899999999996532 1123344444442
Q ss_pred CCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHH
Q 011393 348 SNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALC 427 (487)
Q Consensus 348 ~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv 427 (487)
...++++++++.....+. ++++|+. .+.|+.|+.+++.+++...+...++.++++.+..|++.+.| +.+.+.+++
T Consensus 178 --~~~~iIli~~~~~~~~l~-~l~~r~~-~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G-diR~~i~~L 252 (516)
T 1sxj_A 178 --TSTPLILICNERNLPKMR-PFDRVCL-DIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG-DIRQVINLL 252 (516)
T ss_dssp --CSSCEEEEESCTTSSTTG-GGTTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT-CHHHHHHHH
T ss_pred --cCCCEEEEEcCCCCccch-hhHhceE-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHH
Confidence 123356665554434443 4555554 89999999999999999988888888899999999999876 344444444
Q ss_pred HHH
Q 011393 428 EEA 430 (487)
Q Consensus 428 ~~A 430 (487)
+.+
T Consensus 253 ~~~ 255 (516)
T 1sxj_A 253 STI 255 (516)
T ss_dssp THH
T ss_pred HHH
Confidence 443
No 44
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.83 E-value=5.6e-20 Score=179.32 Aligned_cols=228 Identities=17% Similarity=0.210 Sum_probs=154.4
Q ss_pred cccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccc-hhccchh
Q 011393 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT-SKWVGEG 293 (487)
Q Consensus 215 ~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~-~~~~g~~ 293 (487)
...++|.+...+.+........ ..+......++.++||+||||||||++|+++|++.+.+|+.+++++.. +...+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 3457787766665555321100 011111245568999999999999999999999999999999886522 2222233
Q ss_pred HHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCH-HHHc
Q 011393 294 EKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDD-AVLR 372 (487)
Q Consensus 294 ~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~-al~~ 372 (487)
...++.+|..+....++||||||+|.|++.+..+ ......++..|...+++... ....++||+|||.++.+++ .+++
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~ 187 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLN 187 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhhc
Confidence 4567788888877788999999999997654322 12234556666666665432 3456889999999988887 6788
Q ss_pred ccccEEEccCCCH-HHHHHHHHHHhccCCCCCChhhHHHHHHHcCCC----CHHHHHHHHHHHHHHhHHhhccchhcccc
Q 011393 373 RLVKRIYVPLPDE-NVRRLLLKHKLKGQAFSLPGGDLERLVRETEGY----SGSDLQALCEEAAMMPIRELGTNILTVKA 447 (487)
Q Consensus 373 Rf~~~i~i~~Pd~-~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~----s~~dL~~lv~~A~~~a~~~~~~~~~~~~~ 447 (487)
||...+.+|.++. ++...++.. .. .++++.+..++..+.|| +.+++.++++.|...+
T Consensus 188 rf~~~i~~p~l~~r~~i~~i~~~---~~--~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~------------- 249 (272)
T 1d2n_A 188 AFSTTIHVPNIATGEQLLEALEL---LG--NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD------------- 249 (272)
T ss_dssp TSSEEEECCCEEEHHHHHHHHHH---HT--CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-------------
T ss_pred ccceEEcCCCccHHHHHHHHHHh---cC--CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-------------
Confidence 9988888876655 444444333 22 35788999999999997 6778888887765432
Q ss_pred ccCCCCcHHHHHHHHHhhCC
Q 011393 448 NQLRPLRYEDFQKAMAVIRP 467 (487)
Q Consensus 448 ~~~~~l~~~df~~al~~~~p 467 (487)
.....++|..++.....
T Consensus 250 ---~~~~~~~~~~~l~~~~~ 266 (272)
T 1d2n_A 250 ---PEYRVRKFLALLREEGA 266 (272)
T ss_dssp ---GGGHHHHHHHHHHHTSC
T ss_pred ---hHHHHHHHHHHHHHcCC
Confidence 11345677777766544
No 45
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.83 E-value=8.8e-20 Score=183.93 Aligned_cols=218 Identities=16% Similarity=0.150 Sum_probs=156.3
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC------CeEE
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ------ATFF 278 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~------~~~~ 278 (487)
.|+++|+|.+|++++|++++++.|..++.. .. ..++||+||||||||++|+++++.++ ..++
T Consensus 26 ~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~-----------~~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 93 (353)
T 1sxj_D 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKS-----------AN-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL 93 (353)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC-----------TT-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred cHHHhcCCCCHHHhhCCHHHHHHHHHHHhc-----------CC-CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceE
Confidence 688899999999999999999999888741 11 23599999999999999999999854 4688
Q ss_pred EEecCccchhccchhHHHHHHHHHH-----------H-HhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCC
Q 011393 279 NVSASSLTSKWVGEGEKLVRTLFMV-----------A-ISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGV 346 (487)
Q Consensus 279 ~v~~~~l~~~~~g~~~~~i~~~f~~-----------a-~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 346 (487)
.+++++..+. +.....+..+... . ....+.||||||+|.+.. ...+.|+..|+..
T Consensus 94 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~-----------~~~~~Ll~~le~~ 160 (353)
T 1sxj_D 94 ELNASDERGI--SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-----------DAQSALRRTMETY 160 (353)
T ss_dssp EECSSSCCCH--HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHT
T ss_pred EEccccccch--HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----------HHHHHHHHHHHhc
Confidence 8888764221 1111111111110 0 012446999999999832 3345566666543
Q ss_pred CCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 011393 347 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 426 (487)
Q Consensus 347 ~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~l 426 (487)
. ..+.+|.++|.+..+.+++++||. .+.++.|+.++...++...+...++.++++.++.|+..++| +.+.+.++
T Consensus 161 ~----~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~ 234 (353)
T 1sxj_D 161 S----GVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGITL 234 (353)
T ss_dssp T----TTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHH
T ss_pred C----CCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 2 235667788999999999999997 79999999999999999999888888999999999999987 56666677
Q ss_pred HHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHH
Q 011393 427 CEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMA 463 (487)
Q Consensus 427 v~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~ 463 (487)
++.++..+-+.. ....|+.+|+.+++.
T Consensus 235 l~~~~~~~~~~~----------~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 235 LQSASKGAQYLG----------DGKNITSTQVEELAG 261 (353)
T ss_dssp HHHTHHHHHHHC----------SCCCCCHHHHHHHHT
T ss_pred HHHHHHhcCCCc----------cCccccHHHHHHHhC
Confidence 766655432210 001467777766655
No 46
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.83 E-value=1.1e-19 Score=189.34 Aligned_cols=222 Identities=16% Similarity=0.252 Sum_probs=158.3
Q ss_pred CCCCccccc-C--hHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEEEec
Q 011393 211 PSVKWEDVA-G--LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSA 282 (487)
Q Consensus 211 ~~~~~~di~-G--~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~v~~ 282 (487)
|..+|++++ | ...+...+..+...+ .. +.+++||||||||||+||+++++++ +.+++.+++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHP----------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHST----------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCC----------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 456899987 5 344455555544321 12 5689999999999999999999987 888999998
Q ss_pred CccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 011393 283 SSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 362 (487)
Q Consensus 283 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~ 362 (487)
..+...+.+.........|.......+.||||||+|.+...+ .....|+..++.... .+..+||++.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---------~~q~~l~~~l~~l~~--~~~~iIitt~~~ 237 (440)
T 2z4s_A 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---------GVQTELFHTFNELHD--SGKQIVICSDRE 237 (440)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---------HHHHHHHHHHHHHHT--TTCEEEEEESSC
T ss_pred HHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---------HHHHHHHHHHHHHHH--CCCeEEEEECCC
Confidence 887654443322221222333333378999999999985421 223334444332221 223566666665
Q ss_pred CCC---CCHHHHcccc--cEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHh
Q 011393 363 PQE---LDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 363 ~~~---ld~al~~Rf~--~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~ 437 (487)
+.. +++++++||. ..+.++.|+.+++..++...+...++.++++.++.|+..+.| +.+++..+++.++..+...
T Consensus 238 ~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~ 316 (440)
T 2z4s_A 238 PQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT 316 (440)
T ss_dssp GGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh
Confidence 654 7899999996 678999999999999999999888888899999999999876 8999999999887766322
Q ss_pred hccchhccccccCCCCcHHHHHHHHHhhCC
Q 011393 438 LGTNILTVKANQLRPLRYEDFQKAMAVIRP 467 (487)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~~df~~al~~~~p 467 (487)
..+|+.+++.+++....+
T Consensus 317 ------------~~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 317 ------------GKEVDLKEAILLLKDFIK 334 (440)
T ss_dssp ------------SSCCCHHHHHHHTSTTTC
T ss_pred ------------CCCCCHHHHHHHHHHHhh
Confidence 135888999999887664
No 47
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.83 E-value=5.3e-20 Score=182.66 Aligned_cols=197 Identities=19% Similarity=0.204 Sum_probs=148.9
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEE
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFN 279 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~ 279 (487)
.|+++++|.+|++++|++.+++.|..++.. .. ..++||+||||||||++|+++++.+ +.+++.
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 73 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER-----------KN-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------TC-CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------CC-CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence 688999999999999999999999887741 12 2349999999999999999999986 346788
Q ss_pred EecCccchhccchhHHHHHHHHHHH-H-hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 011393 280 VSASSLTSKWVGEGEKLVRTLFMVA-I-SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVM 357 (487)
Q Consensus 280 v~~~~l~~~~~g~~~~~i~~~f~~a-~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI 357 (487)
+++++..+. ......+..+.... . ...+.||||||+|.+. ....+.|+..++. +...+++|
T Consensus 74 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~----~~~~~~~i 136 (319)
T 2chq_A 74 MNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTMEM----YSKSCRFI 136 (319)
T ss_dssp EETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-----------HHHHHTTGGGTSS----SSSSEEEE
T ss_pred EeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-----------HHHHHHHHHHHHh----cCCCCeEE
Confidence 888764321 11122222221100 0 1357899999999983 2334555555553 34457888
Q ss_pred EecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 011393 358 GATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAM 432 (487)
Q Consensus 358 ~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~ 432 (487)
++||.+..+.+++++||. .+.++.|+.++...++...+...++.++++.++.|+..+.| +.+.+.++++.++.
T Consensus 137 ~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~ 209 (319)
T 2chq_A 137 LSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAA 209 (319)
T ss_dssp EEESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHH
T ss_pred EEeCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 889999999999999997 79999999999999999999998988999999999988866 56666677666543
No 48
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.82 E-value=4.8e-19 Score=177.12 Aligned_cols=198 Identities=19% Similarity=0.267 Sum_probs=143.2
Q ss_pred CCCCccccc-C--hHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCc
Q 011393 211 PSVKWEDVA-G--LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (487)
Q Consensus 211 ~~~~~~di~-G--~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~ 284 (487)
|..+|++++ | ...+...+..++..+ ...+.+++||||||||||+||+++++++ +.+++.+++.+
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 566899987 4 555666666665422 1235689999999999999999999998 89999999988
Q ss_pred cchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 011393 285 LTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ 364 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~ 364 (487)
+...+.+.........|.... ..++||||||+|.+...+ ..+..++..++.... .+..+|+++++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~---------~~~~~l~~~l~~~~~--~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTLYL--LEKQIILASDRHPQ 143 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH---------HHHHHHHHHHHHHHH--TTCEEEEEESSCGG
T ss_pred HHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh---------HHHHHHHHHHHHHHH--CCCeEEEEecCChH
Confidence 765554433322222233222 347899999999985321 122233333322211 12356777777766
Q ss_pred ---CCCHHHHcccc--cEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 011393 365 ---ELDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMM 433 (487)
Q Consensus 365 ---~ld~al~~Rf~--~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~ 433 (487)
.+++++++||. ..+.+++ +.+++..+++.++...++.++++.++.|+..+ | +.+++..+++.++..
T Consensus 144 ~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 144 KLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred HHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 68999999996 5789999 99999999999999888999999999999999 5 788898888887665
No 49
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.82 E-value=2.8e-19 Score=178.05 Aligned_cols=199 Identities=20% Similarity=0.222 Sum_probs=149.1
Q ss_pred hhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC-----CeE
Q 011393 203 NTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-----ATF 277 (487)
Q Consensus 203 ~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~-----~~~ 277 (487)
...|+++++|.+|++++|++.+++.|..++.. .. ..++||+||||||||++|+++++.+. ..+
T Consensus 12 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~ 79 (327)
T 1iqp_A 12 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GS-MPHLLFAGPPGVGKTTAALALARELFGENWRHNF 79 (327)
T ss_dssp TSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHH-----------TC-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred CCchhhccCCCCHHHhhCCHHHHHHHHHHHHc-----------CC-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCce
Confidence 34788999999999999999999999988742 12 23599999999999999999999863 347
Q ss_pred EEEecCccchhccchhHHHHHHHHHHH-H-hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEE
Q 011393 278 FNVSASSLTSKWVGEGEKLVRTLFMVA-I-SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVI 355 (487)
Q Consensus 278 ~~v~~~~l~~~~~g~~~~~i~~~f~~a-~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vi 355 (487)
+.+++++..+. ......+..+.... . ...+.||+|||+|.+. ....+.|+..++.. ...+.
T Consensus 80 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~~----~~~~~ 142 (327)
T 1iqp_A 80 LELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----------QDAQQALRRTMEMF----SSNVR 142 (327)
T ss_dssp EEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------HHHHHHHHHHHHHT----TTTEE
T ss_pred EEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------HHHHHHHHHHHHhc----CCCCe
Confidence 78887654321 11111122211100 0 1457899999999983 23345566666532 33477
Q ss_pred EEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 011393 356 VMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAM 432 (487)
Q Consensus 356 vI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~ 432 (487)
+|+++|.+..+.+++.+||. .+.+++|+.++...++...+...++.++++.++.|+..+.| +.+.+.++++.++.
T Consensus 143 ~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~ 217 (327)
T 1iqp_A 143 FILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA 217 (327)
T ss_dssp EEEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred EEEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHh
Confidence 88889999999999999998 79999999999999999999888888899999999999877 67777777776653
No 50
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.82 E-value=8e-20 Score=191.91 Aligned_cols=196 Identities=21% Similarity=0.279 Sum_probs=147.5
Q ss_pred hhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc--------
Q 011393 202 INTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-------- 273 (487)
Q Consensus 202 ~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-------- 273 (487)
....|.+++++.++++|+|.+..++.+.+.+.. ....++||+||||||||++|+++|..+
T Consensus 166 ~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~ 233 (468)
T 3pxg_A 166 LARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEI 233 (468)
T ss_dssp SCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTT
T ss_pred HHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh
Confidence 345677778889999999999999999888741 234689999999999999999999996
Q ss_pred --CCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCC
Q 011393 274 --QATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPN 351 (487)
Q Consensus 274 --~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 351 (487)
+.+|+.++++ ..+.|..+..++.+|..+....++||||| + .....+.|+..|+ .
T Consensus 234 l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~---------~~~a~~~L~~~L~------~ 289 (468)
T 3pxg_A 234 LRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------A---------AIDASNILKPSLA------R 289 (468)
T ss_dssp TSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-----------------CCCTT------S
T ss_pred hcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------C---------chhHHHHHHHhhc------C
Confidence 7889998887 67788888889999999988889999999 1 0122233333333 2
Q ss_pred CcEEEEEecCCCC-----CCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc----CCCCCChhhHHHHHHHcCCCC---
Q 011393 352 DLVIVMGATNKPQ-----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----QAFSLPGGDLERLVRETEGYS--- 419 (487)
Q Consensus 352 ~~vivI~ttn~~~-----~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~----~~~~l~~~~l~~La~~t~G~s--- 419 (487)
+.+.||++||.+. .+++++++||. .+.|+.|+.+++..|++.++.. +++.+++..+..++..+.+|.
T Consensus 290 g~v~vI~at~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~ 368 (468)
T 3pxg_A 290 GELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 368 (468)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCS
T ss_pred CCEEEEecCCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Confidence 3488999998886 68999999998 5999999999999999988876 778889999999998876554
Q ss_pred --HHHHHHHHHHHHHHh
Q 011393 420 --GSDLQALCEEAAMMP 434 (487)
Q Consensus 420 --~~dL~~lv~~A~~~a 434 (487)
+.....++..|+..+
T Consensus 369 ~lp~~ai~ll~~a~~~~ 385 (468)
T 3pxg_A 369 FLPDKAIDLIDEAGSKV 385 (468)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHH
Confidence 447777887776544
No 51
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.82 E-value=6.1e-19 Score=167.48 Aligned_cols=212 Identities=13% Similarity=0.135 Sum_probs=150.6
Q ss_pred cccCCCC-CCcccccCh---HHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEE
Q 011393 206 IVDRSPS-VKWEDVAGL---EKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFF 278 (487)
Q Consensus 206 ~~~~~~~-~~~~di~G~---~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~ 278 (487)
+..++++ .+|++++|. +.+.+.|..++.. ..+.+++|+||||||||++|+++++++ +.+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~ 84 (242)
T 3bos_A 17 LPVHLPDDETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSF 84 (242)
T ss_dssp EECCCCTTCSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCCCCCCChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3344444 789999973 4667777666631 135789999999999999999999876 47888
Q ss_pred EEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcE-EEE
Q 011393 279 NVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLV-IVM 357 (487)
Q Consensus 279 ~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v-ivI 357 (487)
.+++.++....... + . ....+.+|||||+|.+.... .....++..++..... ..+ +|+
T Consensus 85 ~~~~~~~~~~~~~~----~----~--~~~~~~vliiDe~~~~~~~~---------~~~~~l~~~l~~~~~~--~~~~ii~ 143 (242)
T 3bos_A 85 YIPLGIHASISTAL----L----E--GLEQFDLICIDDVDAVAGHP---------LWEEAIFDLYNRVAEQ--KRGSLIV 143 (242)
T ss_dssp EEEGGGGGGSCGGG----G----T--TGGGSSEEEEETGGGGTTCH---------HHHHHHHHHHHHHHHH--CSCEEEE
T ss_pred EEEHHHHHHHHHHH----H----H--hccCCCEEEEeccccccCCH---------HHHHHHHHHHHHHHHc--CCCeEEE
Confidence 89988765543211 1 1 11457899999999984321 1122233333222111 123 555
Q ss_pred EecCCCC---CCCHHHHcccc--cEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 011393 358 GATNKPQ---ELDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAM 432 (487)
Q Consensus 358 ~ttn~~~---~ld~al~~Rf~--~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~ 432 (487)
+++..+. .+++.+.+||. ..+.++.|+.+++.+++..++...++.++++.++.|+..+.| +.+++..+++.++.
T Consensus 144 ~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~ 222 (242)
T 3bos_A 144 SASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDK 222 (242)
T ss_dssp EESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 5554444 45699999995 789999999999999999999888888999999999999876 79999999999887
Q ss_pred HhHHhhccchhccccccCCCCcHHHHHHHHH
Q 011393 433 MPIRELGTNILTVKANQLRPLRYEDFQKAMA 463 (487)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~l~~~df~~al~ 463 (487)
.+... ...|+.+|+.+++.
T Consensus 223 ~a~~~------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 223 ASMVH------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHH------------TCCCCHHHHHHHHT
T ss_pred HHHHh------------CCCCcHHHHHHHhh
Confidence 76433 14589999988874
No 52
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.81 E-value=1.1e-17 Score=168.07 Aligned_cols=242 Identities=18% Similarity=0.180 Sum_probs=168.3
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~ 284 (487)
.|++..++.+|++++|.+.+++.|...+..... ...++.+++|+||||+|||||++++|+++++++...++..
T Consensus 14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp ---CTTSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred HHHHHcCCccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence 467778888999999999998888776642110 1234578999999999999999999999999887776654
Q ss_pred cchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC-------CC-------C
Q 011393 285 LTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT-------SN-------P 350 (487)
Q Consensus 285 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~-------~ 350 (487)
+.. ...+..++.. ...+.|+||||+|.+.+ ...+.++..++... .. .
T Consensus 87 ~~~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 87 LVK------QGDMAAILTS--LERGDVLFIDEIHRLNK-----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp CCS------HHHHHHHHHH--CCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCCCC--------------
T ss_pred hcC------HHHHHHHHHH--ccCCCEEEEcchhhcCH-----------HHHHHHHHHHHhcccceeeccCccccccccc
Confidence 421 1122222221 23567999999999843 12222333332211 00 0
Q ss_pred CCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 011393 351 NDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEA 430 (487)
Q Consensus 351 ~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A 430 (487)
...+.++++|+.+..|++++++||...+.+++|+.++..++++......++.++++.+..|+..+.| +++++..+++.+
T Consensus 148 l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 148 IQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp -CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred CCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 1236677899999999999999998889999999999999999988888888899999999999987 678888999888
Q ss_pred HHHhHHhhccchhccccccCCCCcHHHHHHHHHhhCC---CCCHHHHHHHHHHHHHh
Q 011393 431 AMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRP---SLNKSKWEELEQWNREF 484 (487)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~p---s~s~~~i~~~~~w~~~~ 484 (487)
...|..+. ...|+.+++.+++..... ..+..+..-+..+.+.|
T Consensus 227 ~~~a~~~~-----------~~~It~~~v~~al~~~~~~~~~l~~~~~~~l~~~~~~~ 272 (334)
T 1in4_A 227 RDMLTVVK-----------ADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIY 272 (334)
T ss_dssp HHHHHHHT-----------CSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHS
T ss_pred HHHHHHcC-----------CCCcCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHh
Confidence 76664321 235788888888876542 22233333344455555
No 53
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.81 E-value=6.8e-19 Score=174.94 Aligned_cols=192 Identities=15% Similarity=0.143 Sum_probs=147.3
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEE
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFN 279 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~ 279 (487)
.|.++++|..|++++|++.+++.|..++.. ...+ ++||+||||+|||++|+++++.+ +..++.
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 77 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLE 77 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEE
Confidence 577889999999999999999999988741 2223 49999999999999999999985 356788
Q ss_pred EecCccchhccchhHHHHHHHHHHHH-------hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCC
Q 011393 280 VSASSLTSKWVGEGEKLVRTLFMVAI-------SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPND 352 (487)
Q Consensus 280 v~~~~l~~~~~g~~~~~i~~~f~~a~-------~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 352 (487)
+++.+..+ ...++.++.... ...+.||||||+|.+.. ...+.|+..++. +..
T Consensus 78 ~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~----~~~ 136 (323)
T 1sxj_B 78 LNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-----------GAQQALRRTMEL----YSN 136 (323)
T ss_dssp ECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----------HHHHTTHHHHHH----TTT
T ss_pred ecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-----------HHHHHHHHHHhc----cCC
Confidence 88765322 233444444333 23478999999999832 234455555553 233
Q ss_pred cEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 011393 353 LVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAA 431 (487)
Q Consensus 353 ~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~ 431 (487)
.+++|++|+.+..+.+++++||. .+.++.|+.++..+++...+...++.++++.++.|+..+.| +.+.+.++++.++
T Consensus 137 ~~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 137 STRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTV 213 (323)
T ss_dssp TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CceEEEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 47777888889999999999998 79999999999999999998887888899999999999977 5666666666554
No 54
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.81 E-value=6e-19 Score=179.56 Aligned_cols=224 Identities=19% Similarity=0.164 Sum_probs=159.9
Q ss_pred CcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---------CCeEEEEecCc
Q 011393 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSASS 284 (487)
Q Consensus 214 ~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---------~~~~~~v~~~~ 284 (487)
..++++|.+..++.|..++..... ...+.+++|+||||||||++|+++++++ +..++.++|..
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 348899999999999987742211 2345789999999999999999999987 88899999876
Q ss_pred cchhc----------------cch-hHHHHHHHHHHHHh-cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCC
Q 011393 285 LTSKW----------------VGE-GEKLVRTLFMVAIS-RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGV 346 (487)
Q Consensus 285 l~~~~----------------~g~-~~~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 346 (487)
..+.. .+. .......++..... ..|+||||||+|.+...+ .....+..++..++..
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQEL 162 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchhhc
Confidence 43211 111 12223444444322 347899999999995431 1234455555555433
Q ss_pred CCCCCCcEEEEEecCCC---CCCCHHHHccccc-EEEccCCCHHHHHHHHHHHhcc--CCCCCChhhHHHHHHHcC---C
Q 011393 347 TSNPNDLVIVMGATNKP---QELDDAVLRRLVK-RIYVPLPDENVRRLLLKHKLKG--QAFSLPGGDLERLVRETE---G 417 (487)
Q Consensus 347 ~~~~~~~vivI~ttn~~---~~ld~al~~Rf~~-~i~i~~Pd~~~r~~il~~~l~~--~~~~l~~~~l~~La~~t~---G 417 (487)
.. ..++.+|++||.+ ..+++.+++||.. .+.+++|+.++..+++...+.. .+..++++.++.++..+. |
T Consensus 163 ~~--~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 240 (387)
T 2v1u_A 163 GD--RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG 240 (387)
T ss_dssp -------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC
T ss_pred CC--CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc
Confidence 10 2347888888877 6789999999975 8999999999999999998864 455678888999999988 6
Q ss_pred CCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhh
Q 011393 418 YSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVI 465 (487)
Q Consensus 418 ~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~ 465 (487)
.++.+..+|+.|+..+..+ +...|+.+|+..++...
T Consensus 241 -~~r~~~~~l~~a~~~a~~~-----------~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 241 -DARRALDLLRVAGEIAERR-----------REERVRREHVYSARAEI 276 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHT-----------TCSCBCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHHH
Confidence 6888889999887766432 12457788888777655
No 55
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.81 E-value=2.7e-19 Score=181.72 Aligned_cols=195 Identities=25% Similarity=0.294 Sum_probs=149.5
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe--------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------- 276 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~-------- 276 (487)
.|.++|+|..|++++|++.+++.|...+. ....++.+||+||||||||++|+++++.+++.
T Consensus 5 ~l~~k~rp~~~~~~vg~~~~~~~L~~~l~-----------~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 73 (373)
T 1jr3_A 5 VLARKWRPQTFADVVGQEHVLTALANGLS-----------LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 (373)
T ss_dssp CHHHHTCCCSTTTSCSCHHHHHHHHHHHH-----------HTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCC
T ss_pred HHHHhhCCCchhhccCcHHHHHHHHHHHH-----------hCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 46778999999999999999999998874 12334578999999999999999999987542
Q ss_pred ----------------EEEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhhhhccCCCCcchHHHHHH
Q 011393 277 ----------------FFNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDSIMSTRMANENDASRRLK 336 (487)
Q Consensus 277 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~ 336 (487)
++.+++..- .....++.++..+. ...+.||+|||+|.+. ....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~ 136 (373)
T 1jr3_A 74 GVCDNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSF 136 (373)
T ss_dssp SSSHHHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-----------HHHH
T ss_pred cccHHHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-----------HHHH
Confidence 233332210 11123455555443 2346799999999882 2345
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcC
Q 011393 337 SEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETE 416 (487)
Q Consensus 337 ~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~ 416 (487)
+.|+..++. +...+++|++|+.+..+.+++++||. .+.++.|+.++...++..++...++.++++.+..|+..+.
T Consensus 137 ~~Ll~~le~----~~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~ 211 (373)
T 1jr3_A 137 NALLKTLEE----PPEHVKFLLATTDPQKLPVTILSRCL-QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE 211 (373)
T ss_dssp HHHHHHHHS----CCSSEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSS
T ss_pred HHHHHHHhc----CCCceEEEEEeCChHhCcHHHHhhee-EeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCC
Confidence 667777764 33457888888888899999999985 7999999999999999999988888888999999999997
Q ss_pred CCCHHHHHHHHHHHHHH
Q 011393 417 GYSGSDLQALCEEAAMM 433 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~~ 433 (487)
| +++++.++++.+...
T Consensus 212 G-~~r~~~~~l~~~~~~ 227 (373)
T 1jr3_A 212 G-SLRDALSLTDQAIAS 227 (373)
T ss_dssp S-CHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 7 788888888877543
No 56
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.80 E-value=9.7e-19 Score=178.59 Aligned_cols=241 Identities=20% Similarity=0.234 Sum_probs=158.9
Q ss_pred cccChHHHHHHHHHHhhccccChhh------------------hhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEE
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDL------------------FTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFF 278 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~------------------~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~ 278 (487)
+|+|++.+++.|...+..+..+... ......++.++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5899999999999888543332221 1123456678999999999999999999999999999
Q ss_pred EEecCccc-hhccchh-HHHHHHHHHHH----HhcCCcEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcCCCC-
Q 011393 279 NVSASSLT-SKWVGEG-EKLVRTLFMVA----ISRQPCVIFIDEIDSIMSTRMANE---NDASRRLKSEFLIQFDGVTS- 348 (487)
Q Consensus 279 ~v~~~~l~-~~~~g~~-~~~i~~~f~~a----~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~- 348 (487)
.+++..+. ..+.|.. ...+..++..+ ....++||||||+|.+...+.... +.....+++.|+..|++...
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3455543 44455555432 233678999999999976532211 11112367888888875310
Q ss_pred ---C-------------CCCcEEEEEecCC-----------------------------------------CCCCCHHHH
Q 011393 349 ---N-------------PNDLVIVMGATNK-----------------------------------------PQELDDAVL 371 (487)
Q Consensus 349 ---~-------------~~~~vivI~ttn~-----------------------------------------~~~ld~al~ 371 (487)
. ...++++|+++|. ...+.++++
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 0 0123567777662 123678999
Q ss_pred cccccEEEccCCCHHHHHHHHHH----H-------h--ccCCCCCChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHhHH
Q 011393 372 RRLVKRIYVPLPDENVRRLLLKH----K-------L--KGQAFSLPGGDLERLVRETE--GYSGSDLQALCEEAAMMPIR 436 (487)
Q Consensus 372 ~Rf~~~i~i~~Pd~~~r~~il~~----~-------l--~~~~~~l~~~~l~~La~~t~--G~s~~dL~~lv~~A~~~a~~ 436 (487)
+||+..+.|+.++.++...|+.. + + .+..+.++++.++.|+...+ ....+.|.++++.++..++.
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~ 341 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMF 341 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHh
Confidence 99988899999999999998862 1 1 12345678999999999865 35789999999999888776
Q ss_pred hhccchhccccccCCCCcHHHHHHHH
Q 011393 437 ELGTNILTVKANQLRPLRYEDFQKAM 462 (487)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~~~df~~al 462 (487)
+.... ......|+.+++.++.
T Consensus 342 ~~~~~-----~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 342 DLPKL-----KGSEVRITKDCVLKQA 362 (376)
T ss_dssp TGGGG-----TTSEEEECHHHHTTSS
T ss_pred hccCC-----CCCEEEEeHHHhcCCC
Confidence 54321 1112347888876644
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.80 E-value=1.3e-18 Score=193.32 Aligned_cols=234 Identities=20% Similarity=0.238 Sum_probs=172.7
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc----------C
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----------Q 274 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~----------~ 274 (487)
.|.+++++..|++++|.+..++.+.+.+. .....++||+||||||||++|+++|..+ +
T Consensus 175 ~l~~~~~~~~~d~~iGr~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~ 242 (758)
T 1r6b_X 175 NLNQLARVGGIDPLIGREKELERAIQVLC------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMAD 242 (758)
T ss_dssp BHHHHHHTTCSCCCCSCHHHHHHHHHHHT------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTT
T ss_pred hHHHHHhcCCCCCccCCHHHHHHHHHHHh------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 45555667899999999999999888773 2245789999999999999999999986 6
Q ss_pred CeEEEEecCccc--hhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCC
Q 011393 275 ATFFNVSASSLT--SKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPND 352 (487)
Q Consensus 275 ~~~~~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 352 (487)
..++.+++..+. ..+.|..+..++.++..+....++||||||+|.+++....... .....+.|. .+.. ..
T Consensus 243 ~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~--~~~~~~~L~----~~l~--~~ 314 (758)
T 1r6b_X 243 CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QVDAANLIK----PLLS--SG 314 (758)
T ss_dssp CEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC--HHHHHHHHS----SCSS--SC
T ss_pred CEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc--hHHHHHHHH----HHHh--CC
Confidence 788888887776 4678888999999999887777899999999999876543211 122222222 2222 23
Q ss_pred cEEEEEecCCC-----CCCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc----CCCCCChhhHHHHHHHcCC-----C
Q 011393 353 LVIVMGATNKP-----QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----QAFSLPGGDLERLVRETEG-----Y 418 (487)
Q Consensus 353 ~vivI~ttn~~-----~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~----~~~~l~~~~l~~La~~t~G-----~ 418 (487)
.+.+|++|+.+ ..+++++.+||. .+.++.|+.+++.+|++.++.. +++.+++..+..++..+.| +
T Consensus 315 ~~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~ 393 (758)
T 1r6b_X 315 KIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH 393 (758)
T ss_dssp CCEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSC
T ss_pred CeEEEEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccccc
Confidence 47788888754 357899999998 6999999999999999987754 5677888888888887665 4
Q ss_pred CHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhC
Q 011393 419 SGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 419 s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ 466 (487)
.+..+..++.+|+..+... . .......++.+||.+++....
T Consensus 394 lp~~~i~lld~a~~~~~~~--~-----~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 394 LPDKAIDVIDEAGARARLM--P-----VSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp TTHHHHHHHHHHHHHHHHS--S-----SCCCCCSCCHHHHHHHHHHHS
T ss_pred CchHHHHHHHHHHHHHhcc--c-----ccccCCccCHHHHHHHHHHhc
Confidence 5667888888876543221 0 011234689999999988764
No 58
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.79 E-value=6e-19 Score=174.89 Aligned_cols=208 Identities=18% Similarity=0.245 Sum_probs=149.4
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh----
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK---- 288 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~---- 288 (487)
++++|++.+++.|...+...... .....+|..++||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~---~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT---CSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 46889999999999888532211 01122444689999999999999999999987 567999999876432
Q ss_pred -ccchhH-----HHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCC-------CCcEE
Q 011393 289 -WVGEGE-----KLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNP-------NDLVI 355 (487)
Q Consensus 289 -~~g~~~-----~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~~vi 355 (487)
++|... .....+........++||||||+|.+ ...++..|+..|+...... -.+++
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----------HPDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----------CHHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence 111100 00012223333445589999999988 2355666777665322110 12577
Q ss_pred EEEecCC--------------------------CCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc---------CC
Q 011393 356 VMGATNK--------------------------PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG---------QA 400 (487)
Q Consensus 356 vI~ttn~--------------------------~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~---------~~ 400 (487)
+|+|||. ...+++++++||+..+.+++|+.+++..|+..++.. ..
T Consensus 163 iI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~ 242 (311)
T 4fcw_A 163 IIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRIS 242 (311)
T ss_dssp EEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCE
T ss_pred EEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 9999998 446889999999989999999999999999987754 24
Q ss_pred CCCChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHh
Q 011393 401 FSLPGGDLERLVRETE--GYSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 401 ~~l~~~~l~~La~~t~--G~s~~dL~~lv~~A~~~a~~~ 437 (487)
+.+++..++.|+...+ .++.++|.++|+.++..++.+
T Consensus 243 ~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 281 (311)
T 4fcw_A 243 LELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 281 (311)
T ss_dssp EEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHH
T ss_pred EEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHH
Confidence 5578999999999887 678999999999998877654
No 59
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.79 E-value=2.2e-18 Score=173.55 Aligned_cols=220 Identities=16% Similarity=0.211 Sum_probs=142.9
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe-------------
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT------------- 276 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~------------- 276 (487)
.++.+|++++|++.+++.+......+ ...++||+||||||||++|+++++.++..
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHhhCC------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 36789999999999887765444311 12469999999999999999999998631
Q ss_pred --------------------EEEEecCccchhccchhHHHHHHHHHHH---------HhcCCcEEEechhhhhhccCCCC
Q 011393 277 --------------------FFNVSASSLTSKWVGEGEKLVRTLFMVA---------ISRQPCVIFIDEIDSIMSTRMAN 327 (487)
Q Consensus 277 --------------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a---------~~~~p~Il~IDEiD~l~~~~~~~ 327 (487)
++.+..........|.. .+...+... ....++||||||+|.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~------ 157 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLE------ 157 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCC------
Confidence 12111111111111110 001111111 11236799999999883
Q ss_pred cchHHHHHHHHHHHHhcCC----CCC-----CCCcEEEEEecCCCC-CCCHHHHcccccEEEccCC-CHHHHHHHHHHHh
Q 011393 328 ENDASRRLKSEFLIQFDGV----TSN-----PNDLVIVMGATNKPQ-ELDDAVLRRLVKRIYVPLP-DENVRRLLLKHKL 396 (487)
Q Consensus 328 ~~~~~~~~~~~ll~~l~~~----~~~-----~~~~vivI~ttn~~~-~ld~al~~Rf~~~i~i~~P-d~~~r~~il~~~l 396 (487)
...+..|+..++.. ... ...+++||+|+|... .+++++++||...+.++.| +.+++..|+...+
T Consensus 158 -----~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 158 -----DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp -----HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHH
Confidence 23445555555421 110 012588999999744 8999999999988999998 6777778876521
Q ss_pred -----------------------------ccCCCCCChhhHHHHHHHcCCC---CHHHHHHHHHHHHHHhHHhhccchhc
Q 011393 397 -----------------------------KGQAFSLPGGDLERLVRETEGY---SGSDLQALCEEAAMMPIRELGTNILT 444 (487)
Q Consensus 397 -----------------------------~~~~~~l~~~~l~~La~~t~G~---s~~dL~~lv~~A~~~a~~~~~~~~~~ 444 (487)
...++.++++.++.|+....+. +.+.+..+++.|...|..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~------ 306 (350)
T 1g8p_A 233 TYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEG------ 306 (350)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT------
T ss_pred hcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC------
Confidence 1234567899999998887653 56889999998877664431
Q ss_pred cccccCCCCcHHHHHHHHHhh
Q 011393 445 VKANQLRPLRYEDFQKAMAVI 465 (487)
Q Consensus 445 ~~~~~~~~l~~~df~~al~~~ 465 (487)
...|+.+|+.+++..+
T Consensus 307 -----~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 307 -----ATAVGRDHLKRVATMA 322 (350)
T ss_dssp -----CSBCCHHHHHHHHHHH
T ss_pred -----CCcCCHHHHHHHHHHH
Confidence 2348899998887643
No 60
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.79 E-value=2.6e-19 Score=163.43 Aligned_cols=168 Identities=20% Similarity=0.339 Sum_probs=122.3
Q ss_pred hhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---------
Q 011393 203 NTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES--------- 273 (487)
Q Consensus 203 ~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~--------- 273 (487)
...|.+++++..|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++++++
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~ 76 (195)
T 1jbk_A 9 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGL 76 (195)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGG
T ss_pred hHHHHHHHhhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhh
Confidence 34566677788999999999999999888742 235689999999999999999999986
Q ss_pred -CCeEEEEecCccc--hhccchhHHHHHHHHHHHH-hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCC
Q 011393 274 -QATFFNVSASSLT--SKWVGEGEKLVRTLFMVAI-SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN 349 (487)
Q Consensus 274 -~~~~~~v~~~~l~--~~~~g~~~~~i~~~f~~a~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 349 (487)
+.+++.+++..+. ..+.+.....+..++.... ...++||||||+|.+...+........... +...++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~---l~~~~~~---- 149 (195)
T 1jbk_A 77 KGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNM---LKPALAR---- 149 (195)
T ss_dssp TTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHH---HHHHHHT----
T ss_pred cCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHH---HHHhhcc----
Confidence 7889999987765 3455566667777776553 456789999999999754321111111222 2222221
Q ss_pred CCCcEEEEEecCCCC-----CCCHHHHcccccEEEccCCCHHHHHHHH
Q 011393 350 PNDLVIVMGATNKPQ-----ELDDAVLRRLVKRIYVPLPDENVRRLLL 392 (487)
Q Consensus 350 ~~~~vivI~ttn~~~-----~ld~al~~Rf~~~i~i~~Pd~~~r~~il 392 (487)
..+.+|++|+.+. .+++++++||. .+.++.|+.+++.+|+
T Consensus 150 --~~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 --GELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp --TSCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred --CCeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 2366777887765 78999999998 6999999999998775
No 61
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=1.3e-18 Score=175.78 Aligned_cols=198 Identities=15% Similarity=0.210 Sum_probs=142.4
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC---------
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA--------- 275 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~--------- 275 (487)
.|+++|+|.+|++++|++.+++.|..++. .....+. ++|+||+|+|||++++++++++..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~----------~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSD----------QPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTT----------CTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHh----------hCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 69999999999999999999999987761 0122233 999999999999999999996411
Q ss_pred --------------------eEEEEecCccchhccchhHHHHHHHHHHHH--------------hcCCcEEEechhhhhh
Q 011393 276 --------------------TFFNVSASSLTSKWVGEGEKLVRTLFMVAI--------------SRQPCVIFIDEIDSIM 321 (487)
Q Consensus 276 --------------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~--------------~~~p~Il~IDEiD~l~ 321 (487)
.++.+++.+... .....++..+..+. ...|.||+|||++.|-
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~ 147 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT 147 (354)
T ss_dssp --------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC
T ss_pred ceeecccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC
Confidence 122333222110 00112334333321 2367799999999862
Q ss_pred ccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCC
Q 011393 322 STRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAF 401 (487)
Q Consensus 322 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~ 401 (487)
....+.++..++... ..+.+|.+|+.+..+.+++++|| ..+.|+.|+.++...+++..+...++
T Consensus 148 -----------~~~~~~L~~~le~~~----~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (354)
T 1sxj_E 148 -----------KDAQAALRRTMEKYS----KNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERI 211 (354)
T ss_dssp -----------HHHHHHHHHHHHHST----TTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred -----------HHHHHHHHHHHHhhc----CCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 233455666665432 23677888888999999999999 47999999999999999999988888
Q ss_pred CCC-hhhHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q 011393 402 SLP-GGDLERLVRETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 402 ~l~-~~~l~~La~~t~G~s~~dL~~lv~~A~~~a 434 (487)
.++ ++.++.|+..+.| +.+++..+++.++...
T Consensus 212 ~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 212 QLETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp EECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred CCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 888 9999999999977 6777777777766543
No 62
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.78 E-value=2.9e-18 Score=171.83 Aligned_cols=223 Identities=16% Similarity=0.154 Sum_probs=152.0
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~ 284 (487)
.+++++.+..+++++|++.+++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++..
T Consensus 16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~ 81 (331)
T 2r44_A 16 NKIKEVIDEVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTP 81 (331)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred HHHHHHHHHhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCC
Confidence 455566667788999999999988877641 258999999999999999999999999999988742
Q ss_pred cc--hhccchhHHH-HHHHHHHHHhcC---CcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCC-------CCCCC
Q 011393 285 LT--SKWVGEGEKL-VRTLFMVAISRQ---PCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGV-------TSNPN 351 (487)
Q Consensus 285 l~--~~~~g~~~~~-i~~~f~~a~~~~---p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------~~~~~ 351 (487)
.. ....|..... ....+. .... .+||||||+|.+. ...++.|+..|+.. ....+
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~-----------~~~~~~Ll~~l~~~~~~~~g~~~~~~ 148 (331)
T 2r44_A 82 DLLPSDLIGTMIYNQHKGNFE--VKKGPVFSNFILADEVNRSP-----------AKVQSALLECMQEKQVTIGDTTYPLD 148 (331)
T ss_dssp TCCHHHHHEEEEEETTTTEEE--EEECTTCSSEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTEEEECC
T ss_pred CCChhhcCCceeecCCCCceE--eccCcccccEEEEEccccCC-----------HHHHHHHHHHHhcCceeeCCEEEECC
Confidence 11 1111110000 000000 0112 3799999999872 23445555555421 11113
Q ss_pred CcEEEEEecCCCC-----CCCHHHHcccccEEEccCCCHHHHHHHHHHHhccC----------------------CCCCC
Q 011393 352 DLVIVMGATNKPQ-----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQ----------------------AFSLP 404 (487)
Q Consensus 352 ~~vivI~ttn~~~-----~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~----------------------~~~l~ 404 (487)
.+++||+|+|... .+++++++||...+.++.|+.+++.+|++..+... ++.++
T Consensus 149 ~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 228 (331)
T 2r44_A 149 NPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTIS 228 (331)
T ss_dssp SSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCC
T ss_pred CCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCC
Confidence 3477888888543 38999999999889999999999999999987653 45567
Q ss_pred hhhHHHHHHHc-------------------CCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhh
Q 011393 405 GGDLERLVRET-------------------EGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVI 465 (487)
Q Consensus 405 ~~~l~~La~~t-------------------~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~ 465 (487)
+..++.++... .|.+++.+..+++.|...|.-. ....++.+|+.+++..+
T Consensus 229 ~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~-----------g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 229 ESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN-----------NRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT-----------TCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHHH
Confidence 77777776543 1458888888888776555322 22358899999888754
No 63
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.78 E-value=2.6e-18 Score=175.21 Aligned_cols=213 Identities=16% Similarity=0.132 Sum_probs=152.5
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-----------CCeEEEEecCc
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----------QATFFNVSASS 284 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-----------~~~~~~v~~~~ 284 (487)
++++|.+..++.|.+++..... ...+.+++|+||||||||++|+++++++ +.+++.++|..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 7899999999999988753221 2345689999999999999999999987 89999999865
Q ss_pred cc-hh----------c-------cch-hHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHH-HHHHHHHhc
Q 011393 285 LT-SK----------W-------VGE-GEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRL-KSEFLIQFD 344 (487)
Q Consensus 285 l~-~~----------~-------~g~-~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~-~~~ll~~l~ 344 (487)
.. +. . .+. ....+..++...... +.||||||+|.+..... ... +..++...
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~-------~~~~l~~l~~~~- 162 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRG-------GDIVLYQLLRSD- 162 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTT-------SHHHHHHHHTSS-
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCC-------CceeHHHHhcCC-
Confidence 43 11 0 011 123344444433333 34999999999954320 122 33333221
Q ss_pred CCCCCCCCcEEEEEecCCC---CCCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc--CCCCCChhhHHHHHHHcC---
Q 011393 345 GVTSNPNDLVIVMGATNKP---QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG--QAFSLPGGDLERLVRETE--- 416 (487)
Q Consensus 345 ~~~~~~~~~vivI~ttn~~---~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~--~~~~l~~~~l~~La~~t~--- 416 (487)
.++.||++||.+ ..+++++++||...+.+++|+.++..+++...+.. .+..++++.++.++..+.
T Consensus 163 -------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 235 (384)
T 2qby_B 163 -------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEH 235 (384)
T ss_dssp -------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTC
T ss_pred -------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhcc
Confidence 347888888877 67899999999779999999999999999998863 345678889999999987
Q ss_pred CCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhC
Q 011393 417 GYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ 466 (487)
| +.+.+..+|+.|...+. ....|+.+|+..++....
T Consensus 236 G-~~r~a~~~l~~a~~~a~-------------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 236 G-DARKAVNLLFRAAQLAS-------------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp C-CHHHHHHHHHHHHHHTT-------------SSSCCCHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHhc-------------CCCccCHHHHHHHHHHHh
Confidence 5 56777788888876553 124577888887776653
No 64
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.77 E-value=7e-17 Score=164.58 Aligned_cols=232 Identities=13% Similarity=0.033 Sum_probs=162.1
Q ss_pred cccccChHHHHHHHHHHhhccccChhhhhccCCCCc--eeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEecCccchh
Q 011393 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPAR--GLLLFGPPGNGKTMLAKAVASES----QATFFNVSASSLTSK 288 (487)
Q Consensus 215 ~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~--~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~~~l~~~ 288 (487)
.++++|.+..++.|..++..... ...+. +++|+||||||||++++++++.+ +..++.++|......
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR--------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH--------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 38899999999999988753221 12233 89999999999999999999987 678899997654321
Q ss_pred --c--------------cch-hHHHHHHHHHHHH-hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCC
Q 011393 289 --W--------------VGE-GEKLVRTLFMVAI-SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNP 350 (487)
Q Consensus 289 --~--------------~g~-~~~~i~~~f~~a~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 350 (487)
. .+. .......+..... ...|.||||||+|.+ ....+..|+..++......
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~~~~ 156 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQEADKLG 156 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHHHHS
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHhCCCCC
Confidence 0 011 1122222222222 245889999999988 1345566666665432100
Q ss_pred CCcEEEEEecCCC---CCCCHHHHccccc-EEEccCCCHHHHHHHHHHHhcc--CCCCCChhhHHHHHHHcC--------
Q 011393 351 NDLVIVMGATNKP---QELDDAVLRRLVK-RIYVPLPDENVRRLLLKHKLKG--QAFSLPGGDLERLVRETE-------- 416 (487)
Q Consensus 351 ~~~vivI~ttn~~---~~ld~al~~Rf~~-~i~i~~Pd~~~r~~il~~~l~~--~~~~l~~~~l~~La~~t~-------- 416 (487)
..++.||++++.+ ..+++.+.+||.. .+.+++++.++..+++...+.. ....++++.++.++..++
T Consensus 157 ~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 236 (389)
T 1fnn_A 157 AFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTN 236 (389)
T ss_dssp SCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTT
T ss_pred cCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCC
Confidence 1347888888887 6789999999885 7999999999999999988764 233578899999999994
Q ss_pred CCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhCCCCCHHHHHH
Q 011393 417 GYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEE 476 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ps~s~~~i~~ 476 (487)
+..++.+..+|+.|+..+..+. ...++.+|+..++.........+.++.
T Consensus 237 ~G~~r~~~~~l~~a~~~a~~~~-----------~~~i~~~~v~~~~~~~~~~~~~~~l~~ 285 (389)
T 1fnn_A 237 RGDARLAIDILYRSAYAAQQNG-----------RKHIAPEDVRKSSKEVLFGISEEVLIG 285 (389)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTT-----------CSSCCHHHHHHHHHHHSCCCCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhC-----------CCCcCHHHHHHHHHHHhhhhHHHHHHc
Confidence 2368888999998887765431 234777888877777666555444443
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.77 E-value=3.2e-18 Score=190.15 Aligned_cols=197 Identities=21% Similarity=0.279 Sum_probs=148.2
Q ss_pred HhhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-------
Q 011393 201 MINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES------- 273 (487)
Q Consensus 201 ~~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~------- 273 (487)
.....|.+++++..+++|+|.+..++.+.+.+. .....++||+||||||||++|+++|+.+
T Consensus 165 ~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~ 232 (758)
T 3pxi_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLS------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPE 232 (758)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHH------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCT
T ss_pred HHHHHHHHHHhhCCCCCccCchHHHHHHHHHHh------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCCh
Confidence 344567777888999999999999999988874 1334689999999999999999999996
Q ss_pred ---CCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCC
Q 011393 274 ---QATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNP 350 (487)
Q Consensus 274 ---~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 350 (487)
+.+++.+++ ...|.|+.+..++.+|..+....|+||||| . .....+.|+..|+
T Consensus 233 ~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~---------~~~~~~~L~~~l~------ 288 (758)
T 3pxi_A 233 ILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------A---------AIDASNILKPSLA------ 288 (758)
T ss_dssp TTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-----------------CCCTT------
T ss_pred hhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc------C---------chhHHHHHHHHHh------
Confidence 888888887 566788889999999999988899999999 1 0122233333333
Q ss_pred CCcEEEEEecCCCC-----CCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc----CCCCCChhhHHHHHHHcC-----
Q 011393 351 NDLVIVMGATNKPQ-----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----QAFSLPGGDLERLVRETE----- 416 (487)
Q Consensus 351 ~~~vivI~ttn~~~-----~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~----~~~~l~~~~l~~La~~t~----- 416 (487)
.+.+.+|++||... .+++++++||. .+.|+.|+.+++..|++.++.. +++.+++..+..++..+.
T Consensus 289 ~~~v~~I~at~~~~~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~ 367 (758)
T 3pxi_A 289 RGELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISD 367 (758)
T ss_dssp SSSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCC
T ss_pred cCCEEEEeCCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccc
Confidence 23488999998887 79999999996 6999999999999999987765 677788998888887754
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 011393 417 GYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 417 G~s~~dL~~lv~~A~~~a 434 (487)
++.+.....++..|+..+
T Consensus 368 ~~~p~~ai~ll~~a~~~~ 385 (758)
T 3pxi_A 368 RFLPDKAIDLIDEAGSKV 385 (758)
T ss_dssp SCTTHHHHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHH
Confidence 456677788888876655
No 66
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.76 E-value=1.9e-18 Score=194.23 Aligned_cols=212 Identities=19% Similarity=0.280 Sum_probs=149.2
Q ss_pred HhhhccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-------
Q 011393 201 MINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES------- 273 (487)
Q Consensus 201 ~~~~~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~------- 273 (487)
.....|.+++++.+|++++|.+..++.+.+.+. .....++||+||||||||++|+++|+++
T Consensus 155 ~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~ 222 (854)
T 1qvr_A 155 QYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILL------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE 222 (854)
T ss_dssp HHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHH------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCT
T ss_pred HHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHh------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCch
Confidence 344567777888999999999999999888773 1234679999999999999999999987
Q ss_pred ---CCeEEEEecCccc--hhccchhHHHHHHHHHHHHhc-CCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC
Q 011393 274 ---QATFFNVSASSLT--SKWVGEGEKLVRTLFMVAISR-QPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT 347 (487)
Q Consensus 274 ---~~~~~~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~-~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 347 (487)
+.+++.++++.+. ..+.|+.+..++.++..+... .|+||||||+|.|.+...... .....+.|...+..
T Consensus 223 ~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g---~~~~~~~L~~~l~~-- 297 (854)
T 1qvr_A 223 GLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG---AVDAGNMLKPALAR-- 297 (854)
T ss_dssp TSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHT--
T ss_pred hhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc---hHHHHHHHHHHHhC--
Confidence 8899999998886 567888889999999988764 689999999999976543211 12223333334432
Q ss_pred CCCCCcEEEEEecCCCC----CCCHHHHcccccEEEccCCCHHHHHHHHHHHhc----cCCCCCChhhHHHHHHHcC---
Q 011393 348 SNPNDLVIVMGATNKPQ----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK----GQAFSLPGGDLERLVRETE--- 416 (487)
Q Consensus 348 ~~~~~~vivI~ttn~~~----~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~----~~~~~l~~~~l~~La~~t~--- 416 (487)
..+.+|++|+.+. .+++++++||.. +.++.|+.+++.+|++.++. .+++.+++..+..++..+.
T Consensus 298 ----~~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i 372 (854)
T 1qvr_A 298 ----GELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYI 372 (854)
T ss_dssp ----TCCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHC
T ss_pred ----CCeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhc
Confidence 2367888887664 579999999995 99999999999999987665 3567788998888888754
Q ss_pred --CCCHHHHHHHHHHHHHHh
Q 011393 417 --GYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 417 --G~s~~dL~~lv~~A~~~a 434 (487)
+|.+.....++.+|+..+
T Consensus 373 ~~~~lp~kai~lldea~a~~ 392 (854)
T 1qvr_A 373 TERRLPDKAIDLIDEAAARL 392 (854)
T ss_dssp CSSCTHHHHHHHHHHHHHHH
T ss_pred ccccChHHHHHHHHHHHHHH
Confidence 456777888888776554
No 67
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=5.9e-18 Score=170.40 Aligned_cols=191 Identities=17% Similarity=0.208 Sum_probs=142.0
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCC-----eEEE
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA-----TFFN 279 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~-----~~~~ 279 (487)
.|+++|+|.+|++++|++.+++.|...+. .+..+ +++|+||||||||++|+++|+.+.. .+..
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~-----------~g~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVD-----------EGKLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHH-----------TTCCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 68889999999999999999999988874 12222 4999999999999999999998632 4677
Q ss_pred EecCccchhccchhHHHHHHHHHHHH-h-----cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCc
Q 011393 280 VSASSLTSKWVGEGEKLVRTLFMVAI-S-----RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDL 353 (487)
Q Consensus 280 v~~~~l~~~~~g~~~~~i~~~f~~a~-~-----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 353 (487)
+++++..+ ...++..+.... . ..+.|++|||+|.+. ....+.|+..++.. ...
T Consensus 82 ~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~----~~~ 140 (340)
T 1sxj_C 82 LNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----------NAAQNALRRVIERY----TKN 140 (340)
T ss_dssp ECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHT----TTT
T ss_pred EcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhcC----CCC
Confidence 77665321 122333332221 1 236799999999883 23345666666643 234
Q ss_pred EEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 011393 354 VIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEA 430 (487)
Q Consensus 354 vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A 430 (487)
+.+|.+||.+..+.+++++||. .+.++.++.++...++...+...++.+++..+..++..+.| ..+.+.++++.+
T Consensus 141 ~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~ 215 (340)
T 1sxj_C 141 TRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSC 215 (340)
T ss_dssp EEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTT
T ss_pred eEEEEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 6677788999999999999997 68999999999999999999888888899999999999876 444444444433
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.75 E-value=7.9e-18 Score=187.03 Aligned_cols=204 Identities=16% Similarity=0.190 Sum_probs=151.4
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhccch
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGE 292 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~g~ 292 (487)
++|+|++.+++.+.+.+....... ....+|..++||+||||||||++|+++|+.+ +.+|+.++|+++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~---~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL---KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC---SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 569999999999998886332110 0112333479999999999999999999997 7899999999988776554
Q ss_pred hHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC-------CCCCcEEEEEecCCCCC
Q 011393 293 GEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS-------NPNDLVIVMGATNKPQE 365 (487)
Q Consensus 293 ~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~vivI~ttn~~~~ 365 (487)
...+....+...++||||||||.+ ...+++.|+..|+...- ....+++||+|||.+..
T Consensus 568 ----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~ 632 (758)
T 3pxi_A 568 ----GGQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGAS 632 (758)
T ss_dssp -------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTT
T ss_pred ----cchhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChh
Confidence 122333444566789999999987 34667777777764211 11235788999987654
Q ss_pred ------------CCHHHHcccccEEEccCCCHHHHHHHHHHHhcc---------CCCCCChhhHHHHHHH--cCCCCHHH
Q 011393 366 ------------LDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG---------QAFSLPGGDLERLVRE--TEGYSGSD 422 (487)
Q Consensus 366 ------------ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~---------~~~~l~~~~l~~La~~--t~G~s~~d 422 (487)
+.+++++||+..+.|++|+.+++..|+..++.. ..+.++++.++.|+.. .+.++.++
T Consensus 633 ~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~ 712 (758)
T 3pxi_A 633 EKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARP 712 (758)
T ss_dssp CCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTT
T ss_pred hHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChH
Confidence 789999999889999999999999999887753 3456789999999874 55678899
Q ss_pred HHHHHHHHHHHhHHh
Q 011393 423 LQALCEEAAMMPIRE 437 (487)
Q Consensus 423 L~~lv~~A~~~a~~~ 437 (487)
|++++++++..++.+
T Consensus 713 L~~~i~~~v~~~l~~ 727 (758)
T 3pxi_A 713 LRRAIQKHVEDRLSE 727 (758)
T ss_dssp HHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988777654
No 69
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.74 E-value=8.5e-17 Score=163.41 Aligned_cols=223 Identities=17% Similarity=0.187 Sum_probs=154.9
Q ss_pred CCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc------CCeEEEEecCccc
Q 011393 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES------QATFFNVSASSLT 286 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~------~~~~~~v~~~~l~ 286 (487)
...++++|.+..++.|.+++..... ...+..++|+||||||||+|++++++.+ +..++.+++....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 3458899999999999887742211 2345689999999999999999999987 8899999976432
Q ss_pred hh----------------ccch-hHHHHHHHHHHHHhc-CCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC
Q 011393 287 SK----------------WVGE-GEKLVRTLFMVAISR-QPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS 348 (487)
Q Consensus 287 ~~----------------~~g~-~~~~i~~~f~~a~~~-~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 348 (487)
.. ..+. .......++...... .|.||+|||+|.+..... ...+..++..++..
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~~-- 159 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------DDILYKLSRINSEV-- 159 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------STHHHHHHHHHHSC--
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------CHHHHHHhhchhhc--
Confidence 11 0111 223344444444433 389999999999964321 23445566666543
Q ss_pred CCCCcEEEEEecCCC---CCCCHHHHcccc-cEEEccCCCHHHHHHHHHHHhcc--CCCCCChhhHHHHHHHcC---CCC
Q 011393 349 NPNDLVIVMGATNKP---QELDDAVLRRLV-KRIYVPLPDENVRRLLLKHKLKG--QAFSLPGGDLERLVRETE---GYS 419 (487)
Q Consensus 349 ~~~~~vivI~ttn~~---~~ld~al~~Rf~-~~i~i~~Pd~~~r~~il~~~l~~--~~~~l~~~~l~~La~~t~---G~s 419 (487)
...++.+|++++.+ ..+++.+.+||. ..+.+++++.++..+++...+.. ....+++..++.++..+. | +
T Consensus 160 -~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~ 237 (386)
T 2qby_A 160 -NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG-D 237 (386)
T ss_dssp -CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC-C
T ss_pred -CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC-C
Confidence 23357888888876 467889999986 48999999999999999987753 234567888999999887 6 6
Q ss_pred HHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhh
Q 011393 420 GSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVI 465 (487)
Q Consensus 420 ~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~ 465 (487)
++.+..+|+.|+..+..+ ....|+.+|+..++...
T Consensus 238 ~r~~~~ll~~a~~~a~~~-----------~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 238 ARRALDLLRVSGEIAERM-----------KDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HHHHHHHHHHHHHHHHHT-----------TCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-----------CCCccCHHHHHHHHHHH
Confidence 777778888887766432 11346666666655543
No 70
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.73 E-value=1.8e-17 Score=184.19 Aligned_cols=205 Identities=18% Similarity=0.228 Sum_probs=150.3
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchh--------
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK-------- 288 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~-------- 288 (487)
+|+|++.+++.+...+...... .....+|..++||+||||||||++|+++|+.++.+|+.++++++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g---~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g 535 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTT---CSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCC
T ss_pred hccCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcC
Confidence 4789999988888776432110 00112455579999999999999999999999999999999887543
Q ss_pred ----ccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC--CC-----CCcEEEE
Q 011393 289 ----WVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS--NP-----NDLVIVM 357 (487)
Q Consensus 289 ----~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~-----~~~vivI 357 (487)
|+|..+. ..+....+...++||||||||.+ ...+++.|+..|+...- .. -.+++||
T Consensus 536 ~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI 602 (758)
T 1r6b_X 536 APPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLV 602 (758)
T ss_dssp CCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEE
T ss_pred CCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEE
Confidence 3333221 12334444556789999999987 34577778877763210 00 1347899
Q ss_pred EecCCCC-------------------------CCCHHHHcccccEEEccCCCHHHHHHHHHHHhcc---------CCCCC
Q 011393 358 GATNKPQ-------------------------ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG---------QAFSL 403 (487)
Q Consensus 358 ~ttn~~~-------------------------~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~---------~~~~l 403 (487)
+|||.+. .++++|++||+..+.|++|+.+++..|+..++.+ ..+.+
T Consensus 603 ~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 682 (758)
T 1r6b_X 603 MTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEV 682 (758)
T ss_dssp EEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred EecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEe
Confidence 9999754 5789999999988999999999999999988762 13457
Q ss_pred ChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHh
Q 011393 404 PGGDLERLVRETE--GYSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 404 ~~~~l~~La~~t~--G~s~~dL~~lv~~A~~~a~~~ 437 (487)
++..++.|+...+ .+..++|..+++.++..++.+
T Consensus 683 ~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 683 SQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_dssp CHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 8999999998764 445899999999988876543
No 71
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.73 E-value=6.7e-18 Score=153.57 Aligned_cols=159 Identities=23% Similarity=0.347 Sum_probs=114.4
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc----------C
Q 011393 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----------Q 274 (487)
Q Consensus 205 ~~~~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~----------~ 274 (487)
.|.+++++..|++++|.+..++.+.+.+.. ....++||+||||||||++|+++++++ +
T Consensus 11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~ 78 (187)
T 2p65_A 11 DLTALARAGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKG 78 (187)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTT
T ss_pred HHHHHHhccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcC
Confidence 445556678899999999999998887742 235689999999999999999999986 7
Q ss_pred CeEEEEecCccch--hccchhHHHHHHHHHHHHhc-CCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCC
Q 011393 275 ATFFNVSASSLTS--KWVGEGEKLVRTLFMVAISR-QPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPN 351 (487)
Q Consensus 275 ~~~~~v~~~~l~~--~~~g~~~~~i~~~f~~a~~~-~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 351 (487)
.+++.+++..+.. .+.+.....+..++..+... .|.||||||+|.+.+.+..... ...+.+.+...++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~--~~~~~~~l~~~~~~------ 150 (187)
T 2p65_A 79 RKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG--ALDAGNILKPMLAR------ 150 (187)
T ss_dssp CEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT--SCCTHHHHHHHHHT------
T ss_pred CeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc--chHHHHHHHHHHhc------
Confidence 8888888876642 24455566677777766554 6789999999999754431110 11122233333332
Q ss_pred CcEEEEEecCCCC-----CCCHHHHcccccEEEccCCC
Q 011393 352 DLVIVMGATNKPQ-----ELDDAVLRRLVKRIYVPLPD 384 (487)
Q Consensus 352 ~~vivI~ttn~~~-----~ld~al~~Rf~~~i~i~~Pd 384 (487)
..+++|+++|.+. .+++++++||. .+.++.|+
T Consensus 151 ~~~~ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 151 GELRCIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp TCSCEEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred CCeeEEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 2367888888664 68999999999 49999885
No 72
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.70 E-value=1.8e-16 Score=153.73 Aligned_cols=198 Identities=16% Similarity=0.149 Sum_probs=124.9
Q ss_pred CCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CeEEEEecCccchhc
Q 011393 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSASSLTSKW 289 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~---~~~~~v~~~~l~~~~ 289 (487)
.+|++++|.+..++.+.+.+... .....++||+||||||||++|+++++... .+|+.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 47899999999998888777532 12346899999999999999999999874 689999998874321
Q ss_pred c-----chhHHH-------HHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC-------CCC
Q 011393 290 V-----GEGEKL-------VRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT-------SNP 350 (487)
Q Consensus 290 ~-----g~~~~~-------i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~ 350 (487)
. |..... ....+.. ..+++|||||+|.+. ...+..|+..++... ...
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~ 138 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAP-----------MMVQEKLLRVIEYGELERVGGSQPL 138 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSC-----------HHHHHHHHHHHHHCEECCCCC--CE
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcC-----------HHHHHHHHHHHHhCCeecCCCcccc
Confidence 1 110000 0112222 245799999999983 234455666554211 001
Q ss_pred CCcEEEEEecCCC-------CCCCHHHHccccc-EEEccCCCH--HHHHHHHHHHhc----cCCC----CCChhhHHHHH
Q 011393 351 NDLVIVMGATNKP-------QELDDAVLRRLVK-RIYVPLPDE--NVRRLLLKHKLK----GQAF----SLPGGDLERLV 412 (487)
Q Consensus 351 ~~~vivI~ttn~~-------~~ld~al~~Rf~~-~i~i~~Pd~--~~r~~il~~~l~----~~~~----~l~~~~l~~La 412 (487)
...+.||+|||.+ ..+.+.+.+||.. .+.+|..+. ++...++.+++. ..+. .++++.++.|.
T Consensus 139 ~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~ 218 (265)
T 2bjv_A 139 QVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLL 218 (265)
T ss_dssp ECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHH
T ss_pred cCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHH
Confidence 1246788888874 2478999999963 344444432 344445444432 2333 57888999998
Q ss_pred HHcCCCCHHHHHHHHHHHHHHh
Q 011393 413 RETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 413 ~~t~G~s~~dL~~lv~~A~~~a 434 (487)
...+..+.++|.++++.++..+
T Consensus 219 ~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 219 NYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHhC
Confidence 8876668899999999887654
No 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.69 E-value=1e-16 Score=180.20 Aligned_cols=207 Identities=20% Similarity=0.269 Sum_probs=152.0
Q ss_pred cccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh---
Q 011393 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK--- 288 (487)
Q Consensus 215 ~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~--- 288 (487)
+++|+|++.+++.|...+...... .....+|..++||+||||||||++|++++..+ +.+|+.++|+.+...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g---~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGG---CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 568999999999999888532110 01112344689999999999999999999998 789999999877543
Q ss_pred ---------ccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCC-------CC
Q 011393 289 ---------WVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNP-------ND 352 (487)
Q Consensus 289 ---------~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~ 352 (487)
|+|... ...+....+...++||||||+|.+ ...+++.|+..|+...-.. -.
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~ 700 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSHGRTVDFR 700 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSSSCCEECT
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc-----------CHHHHHHHHHHhccCceECCCCCEeccC
Confidence 222221 122333444456689999999987 3567788888887432100 12
Q ss_pred cEEEEEecCC--------------------------CCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhc---------
Q 011393 353 LVIVMGATNK--------------------------PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK--------- 397 (487)
Q Consensus 353 ~vivI~ttn~--------------------------~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~--------- 397 (487)
+++||+|||. ...+.++|+.||+..+.+.+|+.++...|+..++.
T Consensus 701 ~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~ 780 (854)
T 1qvr_A 701 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEK 780 (854)
T ss_dssp TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 5789999996 23568899999988888888999999999988775
Q ss_pred cCCCCCChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHh
Q 011393 398 GQAFSLPGGDLERLVRETE--GYSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 398 ~~~~~l~~~~l~~La~~t~--G~s~~dL~~lv~~A~~~a~~~ 437 (487)
...+.+++..++.|+...+ .++.++|.++|+.++..++.+
T Consensus 781 ~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 781 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp TCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred CceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 2235678999999999887 678999999999998877654
No 74
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.67 E-value=5.3e-16 Score=153.73 Aligned_cols=198 Identities=10% Similarity=0.122 Sum_probs=138.7
Q ss_pred ccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc----------CCeEEEEecCccch
Q 011393 218 VAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----------QATFFNVSASSLTS 287 (487)
Q Consensus 218 i~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~----------~~~~~~v~~~~l~~ 287 (487)
|.|.++..+.|...+...+. ...+.+++|+||||||||++++++++++ ...+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 67777777777777643221 2456799999999999999999999997 45788999876543
Q ss_pred h----------c------cchhHHHHHHHHHHH--HhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCC
Q 011393 288 K----------W------VGEGEKLVRTLFMVA--ISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN 349 (487)
Q Consensus 288 ~----------~------~g~~~~~i~~~f~~a--~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 349 (487)
. . .+.....+..+|... ....++||||||+|.|. . ..++..|+.... .
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~---------q~~L~~l~~~~~----~ 159 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S---------EKILQYFEKWIS----S 159 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C---------THHHHHHHHHHH----C
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c---------chHHHHHHhccc----c
Confidence 2 1 122455667777654 34567899999999996 1 234444554332 2
Q ss_pred CCCcEEEEEecCCCCCC----CHHHHcccc-cEEEccCCCHHHHHHHHHHHhccCC------------------------
Q 011393 350 PNDLVIVMGATNKPQEL----DDAVLRRLV-KRIYVPLPDENVRRLLLKHKLKGQA------------------------ 400 (487)
Q Consensus 350 ~~~~vivI~ttn~~~~l----d~al~~Rf~-~~i~i~~Pd~~~r~~il~~~l~~~~------------------------ 400 (487)
...+++||+++|..+.. ++++++||. .+|.|++++.++...|++..+....
T Consensus 160 ~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 239 (318)
T 3te6_A 160 KNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQN 239 (318)
T ss_dssp SSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC-----
T ss_pred cCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 23458999999887643 455677886 6799999999999999999886521
Q ss_pred -----------CCCChhhHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHhh
Q 011393 401 -----------FSLPGGDLERLVRE---TEGYSGSDLQALCEEAAMMPIREL 438 (487)
Q Consensus 401 -----------~~l~~~~l~~La~~---t~G~s~~dL~~lv~~A~~~a~~~~ 438 (487)
..+++..++.+|+. ..| ..+-.-.+|+.|+..+-++.
T Consensus 240 ~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~ 290 (318)
T 3te6_A 240 QKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDF 290 (318)
T ss_dssp ---CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHH
Confidence 13578889999885 445 34444567788887775543
No 75
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.66 E-value=4.6e-16 Score=154.16 Aligned_cols=194 Identities=19% Similarity=0.263 Sum_probs=131.9
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhc---
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKW--- 289 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~--- 289 (487)
++++|.+..++.+.+.+... .....+|||+||||||||++|+++++.. +.+|+.++|+.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 36899999988888877532 2345689999999999999999999965 6789999998775421
Q ss_pred --cchh-------HHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCC-------CCCCc
Q 011393 290 --VGEG-------EKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTS-------NPNDL 353 (487)
Q Consensus 290 --~g~~-------~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~ 353 (487)
+|.. .......|+.+ .+++|||||||.+. ...+..|+..++.... .....
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDIS-----------PLMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCC-----------HHHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCC-----------HHHHHHHHHHHhcCEeeecCCcccccCC
Confidence 1110 00112334444 35799999999983 2345667776654321 11234
Q ss_pred EEEEEecCCC-------CCCCHHHHcccccEEEccCCCHHH----HHHHHHHHhcc-------CCCCCChhhHHHHHHHc
Q 011393 354 VIVMGATNKP-------QELDDAVLRRLVKRIYVPLPDENV----RRLLLKHKLKG-------QAFSLPGGDLERLVRET 415 (487)
Q Consensus 354 vivI~ttn~~-------~~ld~al~~Rf~~~i~i~~Pd~~~----r~~il~~~l~~-------~~~~l~~~~l~~La~~t 415 (487)
+.||++||.+ ..+.+.+..||. .+.+..|...+ ...++.+++.. ....++++.++.|....
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~ 216 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYD 216 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCC
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCC
Confidence 7888888875 246788888986 34444454443 34455554432 23457889999999998
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 011393 416 EGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 416 ~G~s~~dL~~lv~~A~~~a 434 (487)
+..+.++|.++++.|+..+
T Consensus 217 wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 217 WPGNIRELENAIERAVVLL 235 (304)
T ss_dssp CSSHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 7778999999999988754
No 76
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.66 E-value=6.2e-16 Score=162.60 Aligned_cols=195 Identities=15% Similarity=0.168 Sum_probs=125.2
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC--CeEEEEecCc-----cchh
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ--ATFFNVSASS-----LTSK 288 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~--~~~~~v~~~~-----l~~~ 288 (487)
..|+|.+++++.+...+. ...+|||+||||||||+||+++|+.++ .+|..+.+.- +.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 358999999988876663 135899999999999999999999884 3555555532 2221
Q ss_pred ccchhHHHHHHHHHHHHhc---CCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCC-------CCCCCCcEEEEE
Q 011393 289 WVGEGEKLVRTLFMVAISR---QPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGV-------TSNPNDLVIVMG 358 (487)
Q Consensus 289 ~~g~~~~~i~~~f~~a~~~---~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------~~~~~~~vivI~ 358 (487)
+.+..... ...|..+... .++|||||||+.+ ....++.|+..|+.. ....+.+ ++|+
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~ 154 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMR-LLVA 154 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCC-EEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchh-hhhh
Confidence 11111100 1122211111 4679999999876 345667777777522 1111223 4566
Q ss_pred ecCCCCC---CCHHHHcccccEEEccCCCH-HHHHHHHHHHhcc-----------------------CCCCCChhhHHHH
Q 011393 359 ATNKPQE---LDDAVLRRLVKRIYVPLPDE-NVRRLLLKHKLKG-----------------------QAFSLPGGDLERL 411 (487)
Q Consensus 359 ttn~~~~---ld~al~~Rf~~~i~i~~Pd~-~~r~~il~~~l~~-----------------------~~~~l~~~~l~~L 411 (487)
|||.+.. ..+++++||...+.++.|+. +++..|+...... ..+.+++..++.+
T Consensus 155 ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i 234 (500)
T 3nbx_X 155 ASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELI 234 (500)
T ss_dssp EESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHH
T ss_pred ccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHH
Confidence 6665322 45699999998899999987 7788888765421 1345667777777
Q ss_pred HHHc---------CCCCHHHHHHHHHHHHHHhHHh
Q 011393 412 VRET---------EGYSGSDLQALCEEAAMMPIRE 437 (487)
Q Consensus 412 a~~t---------~G~s~~dL~~lv~~A~~~a~~~ 437 (487)
+... .|.|++.+..+++.|...|.-+
T Consensus 235 ~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~ 269 (500)
T 3nbx_X 235 FMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFS 269 (500)
T ss_dssp HHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhc
Confidence 6655 4789999999988876666543
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=2.5e-16 Score=169.60 Aligned_cols=224 Identities=20% Similarity=0.189 Sum_probs=140.2
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE----ecCccchhccc
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNV----SASSLTSKWVG 291 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v----~~~~l~~~~~g 291 (487)
..|+|++.+++.+.-.+....... ......+...+|||+||||||||+||+++|+.++..++.. ++..+......
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~-~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKV-LEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEE-TTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCCCccc-ccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 468999999888854443211000 0001112334899999999999999999999988776543 22333222111
Q ss_pred hh----HHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC---------CCCCCcEEEEE
Q 011393 292 EG----EKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT---------SNPNDLVIVMG 358 (487)
Q Consensus 292 ~~----~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vivI~ 358 (487)
.. .......+..| .++||||||||.+. ...+..|+..|+... ...+.++.||+
T Consensus 374 ~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~-----------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIa 439 (595)
T 3f9v_A 374 EKGTGEYYLEAGALVLA---DGGIAVIDEIDKMR-----------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIA 439 (595)
T ss_dssp GGGTSSCSEEECHHHHH---SSSEECCTTTTCCC-----------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEE
T ss_pred ccccccccccCCeeEec---CCCcEEeehhhhCC-----------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEE
Confidence 10 00001122222 45799999999883 234456666665321 11124578999
Q ss_pred ecCCCC-------------CCCHHHHcccc-cEEEccCCCHHHHHHHHHHHhccCCC-----------------------
Q 011393 359 ATNKPQ-------------ELDDAVLRRLV-KRIYVPLPDENVRRLLLKHKLKGQAF----------------------- 401 (487)
Q Consensus 359 ttn~~~-------------~ld~al~~Rf~-~~i~i~~Pd~~~r~~il~~~l~~~~~----------------------- 401 (487)
|||.++ .+++++++||+ ..+..+.|+.+ ...|.++.+..+..
T Consensus 440 atNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~ 518 (595)
T 3f9v_A 440 AGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYV 518 (595)
T ss_dssp EECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHH
T ss_pred EcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhC
Confidence 999886 89999999996 56677778888 88888877754321
Q ss_pred --CCChhhHHHHHHH--------------cCCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhh
Q 011393 402 --SLPGGDLERLVRE--------------TEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVI 465 (487)
Q Consensus 402 --~l~~~~l~~La~~--------------t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~ 465 (487)
.++++..+.|... ..+.+++.+..+++.|...|.-+ ....++.+|+.+|+.-+
T Consensus 519 ~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~-----------~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 519 TPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMA-----------LKAEVTREDAERAINIM 587 (595)
T ss_dssp CCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTT-----------SSCCSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHh-----------CcCCCCHHHHHHHHHHH
Confidence 3445555556555 34678888888888776655322 12458889998888754
Q ss_pred C
Q 011393 466 R 466 (487)
Q Consensus 466 ~ 466 (487)
+
T Consensus 588 ~ 588 (595)
T 3f9v_A 588 R 588 (595)
T ss_dssp H
T ss_pred H
Confidence 4
No 78
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.60 E-value=1.1e-14 Score=146.06 Aligned_cols=172 Identities=18% Similarity=0.213 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe------------------------
Q 011393 221 LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT------------------------ 276 (487)
Q Consensus 221 ~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~------------------------ 276 (487)
++++.+.|...+. .++.++.+||+||||+|||++|+++|+.+.+.
T Consensus 7 ~~~~~~~l~~~i~-----------~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQ-----------AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHH-----------TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHH-----------cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 4566666766663 23456679999999999999999999987542
Q ss_pred EEEEecCccchhccchhHHHHHHHHHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCC
Q 011393 277 FFNVSASSLTSKWVGEGEKLVRTLFMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPND 352 (487)
Q Consensus 277 ~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 352 (487)
++.+++.+- +. ......++.+++.+.. ....|++|||+|.|. ....+.|+..++. +..
T Consensus 76 ~~~~~~~~~-~~--~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~-----------~~a~naLLk~lEe----p~~ 137 (334)
T 1a5t_A 76 YYTLAPEKG-KN--TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT-----------DAAANALLKTLEE----PPA 137 (334)
T ss_dssp EEEECCCTT-CS--SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC-----------HHHHHHHHHHHTS----CCT
T ss_pred EEEEecccc-CC--CCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC-----------HHHHHHHHHHhcC----CCC
Confidence 334433210 00 1123345666665532 345799999999982 3456778888873 445
Q ss_pred cEEEEEecCCCCCCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHH
Q 011393 353 LVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCE 428 (487)
Q Consensus 353 ~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~ 428 (487)
++++|.+|+.++.+.+++++||. .+.|+.|+.++...++...+ .++++.+..++..+.| +.+.+..+++
T Consensus 138 ~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G-~~r~a~~~l~ 206 (334)
T 1a5t_A 138 ETWFFLATREPERLLATLRSRCR-LHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAG-SPGAALALFQ 206 (334)
T ss_dssp TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTT-CHHHHHHTTS
T ss_pred CeEEEEEeCChHhCcHHHhhcce-eeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 57888888889999999999997 69999999999999988775 4578888999999877 5555544443
No 79
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.55 E-value=1.1e-14 Score=128.12 Aligned_cols=131 Identities=11% Similarity=0.148 Sum_probs=91.3
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhccchh
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGEG 293 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~g~~ 293 (487)
+++|.+...+.+.+.+... .....+|||+||||||||++|+++++.. +.+|+ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 6789999888888877422 2345679999999999999999999986 77899 999887654
Q ss_pred HHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC-------CCC
Q 011393 294 EKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP-------QEL 366 (487)
Q Consensus 294 ~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~-------~~l 366 (487)
......+..+ .+++|||||+|.+. ...+..|+..|... ...+.+|++||.+ ..+
T Consensus 66 -~~~~~~~~~a---~~g~l~ldei~~l~-----------~~~q~~Ll~~l~~~----~~~~~~I~~t~~~~~~~~~~~~~ 126 (145)
T 3n70_A 66 -PQLNDFIALA---QGGTLVLSHPEHLT-----------REQQYHLVQLQSQE----HRPFRLIGIGDTSLVELAASNHI 126 (145)
T ss_dssp -SCHHHHHHHH---TTSCEEEECGGGSC-----------HHHHHHHHHHHHSS----SCSSCEEEEESSCHHHHHHHSCC
T ss_pred -hhhhcHHHHc---CCcEEEEcChHHCC-----------HHHHHHHHHHHhhc----CCCEEEEEECCcCHHHHHHcCCC
Confidence 2234455555 45799999999983 33455666666432 2235678888764 246
Q ss_pred CHHHHcccc-cEEEccC
Q 011393 367 DDAVLRRLV-KRIYVPL 382 (487)
Q Consensus 367 d~al~~Rf~-~~i~i~~ 382 (487)
.+.+..|+. ..|.+|+
T Consensus 127 ~~~L~~rl~~~~i~lPp 143 (145)
T 3n70_A 127 IAELYYCFAMTQIACLP 143 (145)
T ss_dssp CHHHHHHHHHHEEECCC
T ss_pred CHHHHHHhcCCEEeCCC
Confidence 777777765 3355554
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.55 E-value=4.6e-14 Score=152.71 Aligned_cols=221 Identities=21% Similarity=0.290 Sum_probs=140.2
Q ss_pred cCCCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe---EEEEecCc
Q 011393 208 DRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT---FFNVSASS 284 (487)
Q Consensus 208 ~~~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~---~~~v~~~~ 284 (487)
.++++..|++++|++.+++.+...+. ...+++|+||||||||+||+++|..+... .+.+.+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~--------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAAN--------------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred ccccccccceEECchhhHhhcccccc--------------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 45788999999999999998887774 23589999999999999999999987432 22221111
Q ss_pred cch--h------------------------------------------------------ccchhHHHHHHHHH------
Q 011393 285 LTS--K------------------------------------------------------WVGEGEKLVRTLFM------ 302 (487)
Q Consensus 285 l~~--~------------------------------------------------------~~g~~~~~i~~~f~------ 302 (487)
... . .+.........+|.
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 100 0 00000000111110
Q ss_pred -----------------HHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC-----------------C
Q 011393 303 -----------------VAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT-----------------S 348 (487)
Q Consensus 303 -----------------~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------------~ 348 (487)
......+++|||||+|.|- ...+..|+..|+... .
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~-----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~ 247 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS-----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTE 247 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGGSC-----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCS
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhhCC-----------HHHHHHHHHHHHcCcEEecccccccccccCCCC
Confidence 0112256799999999982 344555665554111 1
Q ss_pred CCCCcEEEEEecCCC--CCCCHHHHcccc---cEEEccC--C-CHHHHHHHHHHHhcc-----CCCCCChhhHHHHHHHc
Q 011393 349 NPNDLVIVMGATNKP--QELDDAVLRRLV---KRIYVPL--P-DENVRRLLLKHKLKG-----QAFSLPGGDLERLVRET 415 (487)
Q Consensus 349 ~~~~~vivI~ttn~~--~~ld~al~~Rf~---~~i~i~~--P-d~~~r~~il~~~l~~-----~~~~l~~~~l~~La~~t 415 (487)
....++.||++||.. ..++++|++||. ..+.++. + ..+....++..+... ....++++.+..|.+..
T Consensus 248 ~~p~~~~vI~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~ 327 (604)
T 3k1j_A 248 PVPCDFVLVAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREA 327 (604)
T ss_dssp CEECCCEEEEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHH
T ss_pred ccceeEEEEEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHH
Confidence 112357899999976 679999999996 3455443 2 344555555443322 23467888999888765
Q ss_pred ---CCC------CHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHh
Q 011393 416 ---EGY------SGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAV 464 (487)
Q Consensus 416 ---~G~------s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~ 464 (487)
.|. +.++|.++++.|...|..+ ....|+.+|+.+|+..
T Consensus 328 ~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~-----------~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 328 QKRAGRKGHLTLRLRDLGGIVRAAGDIAVKK-----------GKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHTTCSTTEEECCHHHHHHHHHHHHHHHHHT-----------TCSSBCHHHHHHHHHH
T ss_pred hhhhccccccccCHHHHHHHHHHHHHHHHhc-----------CcccccHHHHHHHHHh
Confidence 452 6899999999987666332 1245899999999964
No 81
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.5e-13 Score=112.68 Aligned_cols=88 Identities=19% Similarity=0.194 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCC-CCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 011393 46 TAYKLKGYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVP-SYISTSEHEKVKSYRQKISKWQSQVSDR 124 (487)
Q Consensus 46 ~~~~~k~~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~-~~~~~~~~~k~~~y~~rae~~k~~v~~r 124 (487)
....+|.+|++|+++|.+|+.+||.|+.++|+.+|++||++|.+++.++.+ +..++..|++++.+++||.+++.+|++|
T Consensus 11 ~l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~R 90 (116)
T 2dl1_A 11 EIKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTR 90 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 455699999999999999999999999999999999999999999999864 3588999999999999999999999999
Q ss_pred HHHHhhhhC
Q 011393 125 LQALNRRAG 133 (487)
Q Consensus 125 l~~L~~~~~ 133 (487)
|..|+....
T Consensus 91 L~~Le~~~~ 99 (116)
T 2dl1_A 91 LEILEKGLA 99 (116)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHhcCC
Confidence 999998763
No 82
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=99.53 E-value=3.3e-14 Score=110.97 Aligned_cols=82 Identities=24% Similarity=0.289 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhC---CCHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 011393 46 TAYKLKGYFELAKEEIAKAVRAEEW---GLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVS 122 (487)
Q Consensus 46 ~~~~~k~~~~~A~~~i~~Av~~d~~---g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~rae~~k~~v~ 122 (487)
..+++|++|++|+++|.+|+..||. |+.++|+.+|++||++|.+++.++.+. .+..|++++.+++||.+++.+|+
T Consensus 5 ~~~~ik~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g--~G~~we~Ar~LQ~KM~~nL~~v~ 82 (89)
T 3eab_A 5 EAERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTG--QGEQCERARRLQAKMMTNLVMAK 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCC--CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCC--CChhHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999 999999999999999999999998764 78899999999999999999999
Q ss_pred HHHHHHh
Q 011393 123 DRLQALN 129 (487)
Q Consensus 123 ~rl~~L~ 129 (487)
+||..|+
T Consensus 83 ~RL~~Le 89 (89)
T 3eab_A 83 DRLQLLE 89 (89)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999884
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.51 E-value=4.2e-15 Score=130.56 Aligned_cols=131 Identities=13% Similarity=0.161 Sum_probs=87.7
Q ss_pred cccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccchhHHH
Q 011393 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKL 296 (487)
Q Consensus 217 di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g~~~~~ 296 (487)
+++|.+.+++.+.+.+.... ....+|||+||||||||++|+++++... +|+.++|..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 57899999998888875321 2346799999999999999999999888 99999998876543
Q ss_pred HHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC-CC----CCHHHH
Q 011393 297 VRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP-QE----LDDAVL 371 (487)
Q Consensus 297 i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~-~~----ld~al~ 371 (487)
...+++.+ .+++|||||+|.+.. ..+..++..++... ...+.+|+|||.+ .. +++.+.
T Consensus 67 ~~~~~~~a---~~~~l~lDei~~l~~-----------~~q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~~L~ 129 (143)
T 3co5_A 67 PMELLQKA---EGGVLYVGDIAQYSR-----------NIQTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEEKLA 129 (143)
T ss_dssp HHHHHHHT---TTSEEEEEECTTCCH-----------HHHHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHHHHH
T ss_pred hhhHHHhC---CCCeEEEeChHHCCH-----------HHHHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccHHHH
Confidence 34555544 357999999999832 23444555554322 2336677777644 33 345566
Q ss_pred cccc-cEEEccC
Q 011393 372 RRLV-KRIYVPL 382 (487)
Q Consensus 372 ~Rf~-~~i~i~~ 382 (487)
.||. ..|.+|+
T Consensus 130 ~rl~~~~i~lPp 141 (143)
T 3co5_A 130 GLFSESVVRIPP 141 (143)
T ss_dssp HHSSSEEEEECC
T ss_pred HHhcCcEEeCCC
Confidence 6765 3455554
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.50 E-value=4.5e-13 Score=137.43 Aligned_cols=211 Identities=14% Similarity=0.095 Sum_probs=135.5
Q ss_pred CcccccChHHHHHHHHHHh-hccccChhhhhccCCCCceeEE--eCCCCCcHHHHHHHHHHHc---------CCeEEEEe
Q 011393 214 KWEDVAGLEKAKQALMEMV-ILPAKRRDLFTGLRRPARGLLL--FGPPGNGKTMLAKAVASES---------QATFFNVS 281 (487)
Q Consensus 214 ~~~di~G~~~~k~~L~~~v-~~~~~~~~~~~~~~~~~~~iLL--~GppGtGKT~la~aiA~~~---------~~~~~~v~ 281 (487)
..++++|.+..++.|.+.+ ..... +....+..++| +||||+|||+|++.+++++ +..++.++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLS------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHT------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhc------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 3478999999988888877 42211 10123467999 9999999999999999875 56778888
Q ss_pred cCccchh------c---c-------ch-hHHHHHHHHHHHH-hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHh
Q 011393 282 ASSLTSK------W---V-------GE-GEKLVRTLFMVAI-SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQF 343 (487)
Q Consensus 282 ~~~l~~~------~---~-------g~-~~~~i~~~f~~a~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l 343 (487)
+...... . + +. .......+..... ...|.||+|||+|.+...... ....+..++..+
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-----~~~~l~~l~~~~ 168 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-----AAEDLYTLLRVH 168 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-----CHHHHHHHHTHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-----chHHHHHHHHHH
Confidence 6432110 0 0 11 1122222222222 346889999999998542100 123334444444
Q ss_pred cCCCCCC-CCcEEEEEecCCCC---CCC---HHHHcccccEEEccCCCHHHHHHHHHHHhcc--CCCCCChhhHHHHHHH
Q 011393 344 DGVTSNP-NDLVIVMGATNKPQ---ELD---DAVLRRLVKRIYVPLPDENVRRLLLKHKLKG--QAFSLPGGDLERLVRE 414 (487)
Q Consensus 344 ~~~~~~~-~~~vivI~ttn~~~---~ld---~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~--~~~~l~~~~l~~La~~ 414 (487)
....... ..++.||++++.+. .++ +.+.++|...+.+++++.++..+++...+.. ....+++..+..++..
T Consensus 169 ~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 248 (412)
T 1w5s_A 169 EEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDV 248 (412)
T ss_dssp HHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHH
T ss_pred HhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 3221000 14578888887554 234 6677788767999999999999999876642 2234678889999999
Q ss_pred cC------CCCHHHHHHHHHHHHHHhHH
Q 011393 415 TE------GYSGSDLQALCEEAAMMPIR 436 (487)
Q Consensus 415 t~------G~s~~dL~~lv~~A~~~a~~ 436 (487)
+. | .++.+..++..|+..+..
T Consensus 249 ~~~~~~~~G-~p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 249 YGEDKGGDG-SARRAIVALKMACEMAEA 275 (412)
T ss_dssp HCGGGTSCC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCC-cHHHHHHHHHHHHHHHHH
Confidence 98 7 688888888887765543
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=2.8e-13 Score=134.01 Aligned_cols=142 Identities=13% Similarity=0.156 Sum_probs=105.4
Q ss_pred ChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc------CCeEEEEecCccchhccchh
Q 011393 220 GLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES------QATFFNVSASSLTSKWVGEG 293 (487)
Q Consensus 220 G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~------~~~~~~v~~~~l~~~~~g~~ 293 (487)
|++++.+.|...+. ... .+++|||||||+|||++|+++|+.+ ...++.++++.- ...
T Consensus 1 g~~~~~~~L~~~i~-----------~~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIE-----------KSE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG 63 (305)
T ss_dssp ---CHHHHHHHHHH-----------TCS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred ChHHHHHHHHHHHH-----------CCC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence 67788888888874 223 4689999999999999999999863 446777776421 112
Q ss_pred HHHHHHHHHHHHhc----CCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHH
Q 011393 294 EKLVRTLFMVAISR----QPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDA 369 (487)
Q Consensus 294 ~~~i~~~f~~a~~~----~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~a 369 (487)
-..++.+++.+... ...|+||||+|.|. ....+.|+..|+ .++..+++|.+|+.+..+.++
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt-----------~~a~naLLk~LE----ep~~~t~fIl~t~~~~kl~~t 128 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMT-----------QQAANAFLKALE----EPPEYAVIVLNTRRWHYLLPT 128 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC-----------HHHHHHTHHHHH----SCCTTEEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhC-----------HHHHHHHHHHHh----CCCCCeEEEEEECChHhChHH
Confidence 34466777766422 23699999999982 345678888887 344557777788889999999
Q ss_pred HHcccccEEEccCCCHHHHHHHHHHHh
Q 011393 370 VLRRLVKRIYVPLPDENVRRLLLKHKL 396 (487)
Q Consensus 370 l~~Rf~~~i~i~~Pd~~~r~~il~~~l 396 (487)
+++| .+.|+.|+.++...++...+
T Consensus 129 I~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 129 IKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHce---eEeCCCCCHHHHHHHHHHHh
Confidence 9999 68999999999999888876
No 86
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=99.46 E-value=1.2e-13 Score=108.69 Aligned_cols=70 Identities=21% Similarity=0.279 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 011393 51 KGYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQ 120 (487)
Q Consensus 51 k~~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~rae~~k~~ 120 (487)
.+++++|++++++||+.|+.|+|++|+.+|++|+++|+.++++++|+..++.++.|+.+|++|||+++..
T Consensus 13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~LK~~ 82 (83)
T 2w2u_A 13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLKEL 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3578999999999999999999999999999999999999999999999999999999999999998863
No 87
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=99.43 E-value=1.9e-13 Score=107.73 Aligned_cols=68 Identities=26% Similarity=0.334 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 011393 53 YFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQ 120 (487)
Q Consensus 53 ~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~rae~~k~~ 120 (487)
+.++|++++++||+.|+.|+|++|+.+|++|+++|+.++++++++..++.++.|+.+|++|||+++..
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~Lk~~ 74 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKV 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999998876
No 88
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=99.40 E-value=5.7e-13 Score=107.39 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 011393 51 KGYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVSDR 124 (487)
Q Consensus 51 k~~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~rae~~k~~v~~r 124 (487)
+.++++|++++.+||+.|+.|+|++|+.+|++|+++|+.++++++++..+..++.|+.+|+.|||+++..++..
T Consensus 9 ~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l~~~ 82 (93)
T 1wfd_A 9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQE 82 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999997544
No 89
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=99.38 E-value=5.7e-13 Score=105.52 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 011393 55 ELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVSD 123 (487)
Q Consensus 55 ~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~rae~~k~~v~~ 123 (487)
.+|++++.+||+.|+.|+|++|+.+|++|+++|+.++++++++..+..++.|+.+|++|||+++..+..
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE~LK~~l~~ 82 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQ 82 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999999999999999999999999999999998643
No 90
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.38 E-value=6.1e-13 Score=155.49 Aligned_cols=149 Identities=15% Similarity=0.199 Sum_probs=106.6
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccC----------hhhhhc-----------------cCCCCce--eEEeCCCCC
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKR----------RDLFTG-----------------LRRPARG--LLLFGPPGN 260 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~----------~~~~~~-----------------~~~~~~~--iLL~GppGt 260 (487)
.+.++|+||.|++++|+.+.+.+.+|+.+ ++.+.. .+.+|++ +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34588999999999999999999998843 333433 1223445 999999999
Q ss_pred cHHHHHHHHHHHc---CCeEEEEecCccc------------hhccch----hHHHHHHHHHHHHhcCCcEEEechhhhhh
Q 011393 261 GKTMLAKAVASES---QATFFNVSASSLT------------SKWVGE----GEKLVRTLFMVAISRQPCVIFIDEIDSIM 321 (487)
Q Consensus 261 GKT~la~aiA~~~---~~~~~~v~~~~l~------------~~~~g~----~~~~i~~~f~~a~~~~p~Il~IDEiD~l~ 321 (487)
|||+||++++.+. +-+.+.|+..... ++|+++ +++.++.+|..|+...|++||+|++|+|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999875 5566666666543 667788 89999999999999999999999999999
Q ss_pred ccCC---C-C--cchHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 011393 322 STRM---A-N--ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 360 (487)
Q Consensus 322 ~~~~---~-~--~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~tt 360 (487)
+.+. + + +.....|+++++|..|++.....+ |+||+|.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~--v~v~~~n 1216 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN--TLLIFIN 1216 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTT--CEEEEEE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCC--eEEEEec
Confidence 8832 1 1 235677889999999987654333 6777443
No 91
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.4e-12 Score=102.27 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 011393 52 GYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVSD 123 (487)
Q Consensus 52 ~~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~rae~~k~~v~~ 123 (487)
+++++|+.++.+||+.|+.|+|++|+.+|++|+++|+.++++++++..+..++.++.+|++|+|+++..++.
T Consensus 8 ~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~Lk~~l~~ 79 (85)
T 2v6x_A 8 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHLES 79 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367899999999999999999999999999999999999999999999999999999999999999998653
No 92
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.32 E-value=3.5e-12 Score=102.14 Aligned_cols=86 Identities=26% Similarity=0.338 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHH
Q 011393 384 DENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMA 463 (487)
Q Consensus 384 d~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~ 463 (487)
|.++|.+||+.++++.++. ++.+++.||+.|+||||+||.++|++|++.|+++. ...|+++||..|++
T Consensus 2 d~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-----------~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-----------RKVATEKDFLKAVD 69 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-SCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS-----------CSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCC-CccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc-----------cccCCHHHHHHHHH
Confidence 5678999999999987765 67899999999999999999999999999999983 24699999999999
Q ss_pred hhCCCCCH-HHHHHHHHHH
Q 011393 464 VIRPSLNK-SKWEELEQWN 481 (487)
Q Consensus 464 ~~~ps~s~-~~i~~~~~w~ 481 (487)
++.++..+ .....|.+|+
T Consensus 70 ~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 70 KVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHTC---------------
T ss_pred HHhcCcccccchhHHhccC
Confidence 99998864 5578888996
No 93
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.30 E-value=1.2e-11 Score=126.44 Aligned_cols=195 Identities=20% Similarity=0.234 Sum_probs=128.6
Q ss_pred cccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhc--
Q 011393 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKW-- 289 (487)
Q Consensus 215 ~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~-- 289 (487)
+..++|.....+.+.+.+.. ......++||+|++||||+++|+++.... +.+|+.++|+.+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~----------~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKK----------ISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHH----------HTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHH----------hcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 45788888777777776642 22345679999999999999999998875 4789999998865321
Q ss_pred ---cchhH-------HHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCC-----CCC--CCC
Q 011393 290 ---VGEGE-------KLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGV-----TSN--PND 352 (487)
Q Consensus 290 ---~g~~~-------~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~~--~~~ 352 (487)
+|... ......|+.| ..++||||||+.| ....+..|+..++.. ... ...
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELA---DGGTLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHT---TTSEEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HHhcCCCCCCCCCcccccCCceeeC---CCcEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 11100 0112344444 3479999999988 345556666665421 111 112
Q ss_pred cEEEEEecCCC-------CCCCHHHHcccccEEEccCCCHHHH----HHHHHHHhc----cCC---CCCChhhHHHHHHH
Q 011393 353 LVIVMGATNKP-------QELDDAVLRRLVKRIYVPLPDENVR----RLLLKHKLK----GQA---FSLPGGDLERLVRE 414 (487)
Q Consensus 353 ~vivI~ttn~~-------~~ld~al~~Rf~~~i~i~~Pd~~~r----~~il~~~l~----~~~---~~l~~~~l~~La~~ 414 (487)
.+.||+|||.. ..+.+.+..|+.. +.+..|...+| ..++.+++. +.+ ..++++.++.|..+
T Consensus 272 ~~rii~at~~~l~~~~~~g~fr~dl~~rl~~-~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~ 350 (387)
T 1ny5_A 272 NVRILAATNRNIKELVKEGKFREDLYYRLGV-IEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSY 350 (387)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHHHHTT-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS
T ss_pred cEEEEEeCCCCHHHHHHcCCccHHHHHhhcC-CeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 47788999863 3456677777752 44555555444 344444442 222 23688999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHh
Q 011393 415 TEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 415 t~G~s~~dL~~lv~~A~~~a 434 (487)
.+..+.++|++++++|+..+
T Consensus 351 ~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 351 PWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp CCTTHHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHHhC
Confidence 88888999999999998754
No 94
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=99.28 E-value=6e-12 Score=105.54 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCC-CCCCcchhhHHHHHHHHHHHHHHHHHH
Q 011393 53 YFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTP-VPSYISTSEHEKVKSYRQKISKWQSQV 121 (487)
Q Consensus 53 ~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~-~~~~~~~~~~~k~~~y~~rae~~k~~v 121 (487)
++++|++++.+||+.|+.|+|++|+.+|++|+++|+.+++++ .++..+..++.++.+|++|||+++..+
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~~l 83 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYL 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999988 677679999999999999999999874
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.25 E-value=4.1e-11 Score=145.87 Aligned_cols=140 Identities=21% Similarity=0.342 Sum_probs=95.7
Q ss_pred CceeEEeCCCCCcHHHHHHHH-HHHcCCeEEEEecCccchhccchhHHHHHHHHHHHH---------------hcCCcEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAV-ASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAI---------------SRQPCVI 312 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~ai-A~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~---------------~~~p~Il 312 (487)
.+++||+||||||||++|+.+ +...+..++.++++...+. ..+...++... ...++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 478999999999999999554 5555778888888766532 23333333320 1234699
Q ss_pred EechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCC------CcEEEEEecCCCC-----CCCHHHHcccccEEEcc
Q 011393 313 FIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPN------DLVIVMGATNKPQ-----ELDDAVLRRLVKRIYVP 381 (487)
Q Consensus 313 ~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~------~~vivI~ttn~~~-----~ld~al~~Rf~~~i~i~ 381 (487)
||||+|.....+ ...+...+++.+++. ..++..... .++.+|||+|+|. .|+++++||| ..+.++
T Consensus 1341 FiDEinmp~~d~--yg~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~ 1416 (2695)
T 4akg_A 1341 FCDEINLPKLDK--YGSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLG 1416 (2695)
T ss_dssp EEETTTCSCCCS--SSCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECC
T ss_pred Eecccccccccc--cCchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeC
Confidence 999998643222 122334445555542 223322111 2478999999994 8999999999 579999
Q ss_pred CCCHHHHHHHHHHHhcc
Q 011393 382 LPDENVRRLLLKHKLKG 398 (487)
Q Consensus 382 ~Pd~~~r~~il~~~l~~ 398 (487)
.|+.+++..|+..++..
T Consensus 1417 ~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988764
No 96
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.25 E-value=1e-11 Score=98.31 Aligned_cols=81 Identities=26% Similarity=0.388 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHH
Q 011393 384 DENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMA 463 (487)
Q Consensus 384 d~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~ 463 (487)
|.++|.+||+.++++.++. ++.+++.||..|+||||+||.++|++|++.|+++. ...|+++||..|+.
T Consensus 2 d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------~~~i~~~df~~Al~ 69 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGMLAVREN-----------RYIVLAKDFEKAYK 69 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-----------CSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------cCCcCHHHHHHHHH
Confidence 6789999999999987765 67899999999999999999999999999998863 25699999999999
Q ss_pred hhCCCCCHHHHHHH
Q 011393 464 VIRPSLNKSKWEEL 477 (487)
Q Consensus 464 ~~~ps~s~~~i~~~ 477 (487)
+++|+++ ++++.|
T Consensus 70 ~~~ps~~-~~l~~y 82 (83)
T 3aji_B 70 TVIKKDE-QEHEFY 82 (83)
T ss_dssp HHCC----------
T ss_pred HHccCch-HHHHhc
Confidence 9999999 666655
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.24 E-value=2.7e-11 Score=110.02 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=65.3
Q ss_pred cCCCCCCcccccC----hHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc----CCeEEE
Q 011393 208 DRSPSVKWEDVAG----LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----QATFFN 279 (487)
Q Consensus 208 ~~~~~~~~~di~G----~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~ 279 (487)
+++++.+|+++++ +..+.+.+.+++.... ...+.+++|+||||||||+|++++++.+ |..++.
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~ 72 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFN---------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF 72 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC---------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhcc---------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 4678889999986 4455555555553211 1235789999999999999999999876 667777
Q ss_pred EecCccchhccchhHH-HHHHHHHHHHhcCCcEEEechhhhh
Q 011393 280 VSASSLTSKWVGEGEK-LVRTLFMVAISRQPCVIFIDEIDSI 320 (487)
Q Consensus 280 v~~~~l~~~~~g~~~~-~i~~~f~~a~~~~p~Il~IDEiD~l 320 (487)
++..++...+...... ....++. ....|.+|+|||++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 73 FDTKDLIFRLKHLMDEGKDTKFLK--TVLNSPVLVLDDLGSE 112 (180)
T ss_dssp EEHHHHHHHHHHHHHHTCCSHHHH--HHHTCSEEEEETCSSS
T ss_pred EEHHHHHHHHHHHhcCchHHHHHH--HhcCCCEEEEeCCCCC
Confidence 7776654432211100 0001111 1236789999999754
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.23 E-value=4.9e-10 Score=111.81 Aligned_cols=194 Identities=17% Similarity=0.201 Sum_probs=121.4
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccc---
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT--- 286 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~--- 286 (487)
.|+..-+.++|.+...+.|.+.+.. ...++|+||+|+|||+|++.++++.+ ++.+++....
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 3556677899999999999887741 15799999999999999999999986 5666654321
Q ss_pred ---------h---hccc-------------------------hhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcc
Q 011393 287 ---------S---KWVG-------------------------EGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANEN 329 (487)
Q Consensus 287 ---------~---~~~g-------------------------~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~ 329 (487)
. ...+ .....+..+...+....|.+|+|||++.+......
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~--- 146 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR--- 146 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT---
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc---
Confidence 0 0000 01112222222232234899999999998531000
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC---------CCCHHHHcccccEEEccCCCHHHHHHHHHHHhccCC
Q 011393 330 DASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ---------ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQA 400 (487)
Q Consensus 330 ~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~---------~ld~al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~ 400 (487)
........+...++.. .++.+|.++.... .....+..|+...+.+++.+.++..+++...+...+
T Consensus 147 -~~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 147 -GGKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp -TTHHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred -chhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 0112222222222221 1245555543211 122234446666899999999999999998887777
Q ss_pred CCCChhhHHHHHHHcCCCCHHHHHHHHHH
Q 011393 401 FSLPGGDLERLVRETEGYSGSDLQALCEE 429 (487)
Q Consensus 401 ~~l~~~~l~~La~~t~G~s~~dL~~lv~~ 429 (487)
..+++..+..+...+.|+ +.-+..++..
T Consensus 221 ~~~~~~~~~~i~~~tgG~-P~~l~~~~~~ 248 (350)
T 2qen_A 221 LDVPENEIEEAVELLDGI-PGWLVVFGVE 248 (350)
T ss_dssp CCCCHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 777888999999999884 6667666543
No 99
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.20 E-value=2.1e-11 Score=97.03 Aligned_cols=77 Identities=27% Similarity=0.431 Sum_probs=69.0
Q ss_pred ccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHH
Q 011393 380 VPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQ 459 (487)
Q Consensus 380 i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~ 459 (487)
-.+||.++|.+||+.++++.++. ++.+++.||+.|+||||+||.++|++|++.|+++. ...|+++||.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-----------~~~I~~~df~ 75 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------RVHVTQEDFE 75 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------CSEECHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------CCCCCHHHHH
Confidence 45799999999999999987765 67889999999999999999999999999999974 2569999999
Q ss_pred HHHHhhCCC
Q 011393 460 KAMAVIRPS 468 (487)
Q Consensus 460 ~al~~~~ps 468 (487)
.|+.+++|.
T Consensus 76 ~Al~~v~p~ 84 (86)
T 2krk_A 76 MAVAKVMQK 84 (86)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHccC
Confidence 999998874
No 100
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.18 E-value=4.7e-11 Score=93.26 Aligned_cols=75 Identities=29% Similarity=0.481 Sum_probs=66.8
Q ss_pred cCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHH
Q 011393 381 PLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQK 460 (487)
Q Consensus 381 ~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~ 460 (487)
|+|+.++|.+||+.++++.++. ++.++..||..|+||||+||.++|++|++.++++. ...|+++||..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------~~~i~~~d~~~ 68 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------RVHVTQEDFEM 68 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------CSEECHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------CCCCCHHHHHH
Confidence 6899999999999999987654 67899999999999999999999999999999873 24699999999
Q ss_pred HHHhhCC
Q 011393 461 AMAVIRP 467 (487)
Q Consensus 461 al~~~~p 467 (487)
|+.++..
T Consensus 69 Al~~v~~ 75 (78)
T 3kw6_A 69 AVAKVMQ 75 (78)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998754
No 101
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.14 E-value=6.7e-10 Score=112.65 Aligned_cols=195 Identities=21% Similarity=0.313 Sum_probs=126.7
Q ss_pred ccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCe--EEEEecCccchhcc---
Q 011393 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--FFNVSASSLTSKWV--- 290 (487)
Q Consensus 216 ~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~--~~~v~~~~l~~~~~--- 290 (487)
.+++|.......+.+.+... ......+|++|++||||+++|+++....+.. |+.++|..+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhh----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 56888888877777666421 1234569999999999999999998876443 99999987643321
Q ss_pred --chhH-------HHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC-----CC--CCCcE
Q 011393 291 --GEGE-------KLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT-----SN--PNDLV 354 (487)
Q Consensus 291 --g~~~-------~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~--~~~~v 354 (487)
|... ......|+.| ..++||||||+.| ....+..|+..++... .. ....+
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 264 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELA---DQGTLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEVDI 264 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHT---TTSEEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEECCC
T ss_pred hcCccccccCCcccccCChHhhc---CCCeEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceeeee
Confidence 1100 0011234444 3469999999998 3456667777665211 11 01246
Q ss_pred EEEEecCCC-------CCCCHHHHccccc-EEEccCCCH--HHHHHHHHHHhc----c---CCCCCChhhHHHHHHHcCC
Q 011393 355 IVMGATNKP-------QELDDAVLRRLVK-RIYVPLPDE--NVRRLLLKHKLK----G---QAFSLPGGDLERLVRETEG 417 (487)
Q Consensus 355 ivI~ttn~~-------~~ld~al~~Rf~~-~i~i~~Pd~--~~r~~il~~~l~----~---~~~~l~~~~l~~La~~t~G 417 (487)
.+|++||.. ..+.+.+..|+.. .|.+|+... ++...++.+++. . ....++++.++.|..+.|.
T Consensus 265 rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wp 344 (368)
T 3dzd_A 265 RVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWK 344 (368)
T ss_dssp EEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCT
T ss_pred EEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCC
Confidence 788888753 2345677777763 344554333 334445555443 2 2345789999999999987
Q ss_pred CCHHHHHHHHHHHHHHh
Q 011393 418 YSGSDLQALCEEAAMMP 434 (487)
Q Consensus 418 ~s~~dL~~lv~~A~~~a 434 (487)
.+.++|.++++.|+..+
T Consensus 345 GNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 345 GNVRELKNLIERAVILC 361 (368)
T ss_dssp THHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 79999999999987654
No 102
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.10 E-value=6.1e-09 Score=103.97 Aligned_cols=189 Identities=13% Similarity=0.099 Sum_probs=118.1
Q ss_pred CCCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccc---
Q 011393 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT--- 286 (487)
Q Consensus 210 ~~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~--- 286 (487)
.|....+.++|.+...+.|.+ +.. ..++|+||+|+|||+|++.++++.+..++.+++....
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 455667889999999999888 631 4799999999999999999999987777778765420
Q ss_pred --h--hccch---------------------------------------hHHHHHHHHHHHHhc--CCcEEEechhhhhh
Q 011393 287 --S--KWVGE---------------------------------------GEKLVRTLFMVAISR--QPCVIFIDEIDSIM 321 (487)
Q Consensus 287 --~--~~~g~---------------------------------------~~~~i~~~f~~a~~~--~p~Il~IDEiD~l~ 321 (487)
+ ..... ....+..++...... .|.+|+|||+|.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 0 00000 011234444443332 38899999999985
Q ss_pred ccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC---------CCCHHHHcccccEEEccCCCHHHHHHHH
Q 011393 322 STRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ---------ELDDAVLRRLVKRIYVPLPDENVRRLLL 392 (487)
Q Consensus 322 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~---------~ld~al~~Rf~~~i~i~~Pd~~~r~~il 392 (487)
.... .+ ....+..+.... .++.+|.+++... .....+..|+...+.+++.+.++..+++
T Consensus 151 ~~~~---~~-~~~~l~~~~~~~--------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 151 KLRG---VN-LLPALAYAYDNL--------KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp GCTT---CC-CHHHHHHHHHHC--------TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred ccCc---hh-HHHHHHHHHHcC--------CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 4211 01 112222222211 1255555554321 1122344466568999999999999999
Q ss_pred HHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHH
Q 011393 393 KHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEE 429 (487)
Q Consensus 393 ~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~ 429 (487)
...+...+...++ ...+...+.| .+.-+..++..
T Consensus 219 ~~~~~~~~~~~~~--~~~i~~~t~G-~P~~l~~~~~~ 252 (357)
T 2fna_A 219 RRGFQEADIDFKD--YEVVYEKIGG-IPGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHTCCCCC--HHHHHHHHCS-CHHHHHHHHHH
T ss_pred HHHHHHcCCCCCc--HHHHHHHhCC-CHHHHHHHHHH
Confidence 9877654444433 3788888888 46667666554
No 103
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.07 E-value=6.9e-10 Score=113.95 Aligned_cols=215 Identities=17% Similarity=0.102 Sum_probs=122.8
Q ss_pred ccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHH-HHHcCCeEEEEec-C---ccchhccch
Q 011393 218 VAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAV-ASESQATFFNVSA-S---SLTSKWVGE 292 (487)
Q Consensus 218 i~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ai-A~~~~~~~~~v~~-~---~l~~~~~g~ 292 (487)
|.|++.+|..|.-.+...... .+..-+|||.|+||| ||+||+++ ++.+....+.... + .+.....+.
T Consensus 215 I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~ 286 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED 286 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEES
T ss_pred cCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcC
Confidence 899999998887766422111 112237999999999 99999999 6665443332111 1 111110000
Q ss_pred h-HHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCC----C-CCCCcEEEEEecCCCC--
Q 011393 293 G-EKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVT----S-NPNDLVIVMGATNKPQ-- 364 (487)
Q Consensus 293 ~-~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----~-~~~~~vivI~ttn~~~-- 364 (487)
+ ...-...+..| ...|+|||||+.+ ....+..|+..|+... . .-+.++.||+|+|...
T Consensus 287 tG~~~~~G~l~LA---dgGvl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~y 352 (506)
T 3f8t_A 287 RGWALRAGAAVLA---DGGILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQW 352 (506)
T ss_dssp SSEEEEECHHHHT---TTSEEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--
T ss_pred CCcccCCCeeEEc---CCCeeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccccc
Confidence 0 00001122223 2469999999987 3445556666654210 0 1234588999999864
Q ss_pred ---------CCCHHHHcccccE-EEccCCCHHH-------------HHHHHHHHhc--cCCCCCChhhHHHHHHH-----
Q 011393 365 ---------ELDDAVLRRLVKR-IYVPLPDENV-------------RRLLLKHKLK--GQAFSLPGGDLERLVRE----- 414 (487)
Q Consensus 365 ---------~ld~al~~Rf~~~-i~i~~Pd~~~-------------r~~il~~~l~--~~~~~l~~~~l~~La~~----- 414 (487)
.|++++++||+.. +.+..|+.+. ...++. +.+ .....++++..+.|...
T Consensus 353 d~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~~~y~~tR 431 (506)
T 3f8t_A 353 PSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLEHWYETRR 431 (506)
T ss_dssp CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHHHHHHHHH
T ss_pred CCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHHHHHHHHh
Confidence 7899999999743 3445555433 222222 222 22345566655444321
Q ss_pred ------------cCCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhhC
Q 011393 415 ------------TEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 415 ------------t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~~ 466 (487)
..|.|++.+..+++-|...|.-+. ...++.+|+.+|+.-+.
T Consensus 432 ~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g-----------R~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 432 EEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRL-----------SDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT-----------CSEECHHHHHHHHHHHH
T ss_pred cCcccccccccccccccHHHHHHHHHHHHHHHHHcC-----------cCCCCHHHHHHHHHHHH
Confidence 336788999999988766664432 23578899998887544
No 104
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=99.03 E-value=2.3e-11 Score=114.76 Aligned_cols=72 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 011393 53 YFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVSDR 124 (487)
Q Consensus 53 ~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~rae~~k~~v~~r 124 (487)
+...|++++++||++|+.|+|++|+.+|++|+++|+.++++++++..+..++.|+.+|++|||++|..+++.
T Consensus 19 ~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk~e~d~~~k~~lr~Ki~eYl~RAE~LK~~L~k~ 90 (257)
T 2ymb_A 19 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQE 90 (257)
T ss_dssp ------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667899999999999999999999999999999999999999999999999999999999999999996544
No 105
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.03 E-value=5.7e-10 Score=98.40 Aligned_cols=108 Identities=15% Similarity=0.276 Sum_probs=69.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTR 324 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~ 324 (487)
+...++|+||+|+|||+|+++++... |..++.++..++... +....|.+|+|||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~- 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE- 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH-
Confidence 35689999999999999999999987 777888888776543 11235789999999876321
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--HHHHcccccEEEccC
Q 011393 325 MANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELD--DAVLRRLVKRIYVPL 382 (487)
Q Consensus 325 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld--~al~~Rf~~~i~i~~ 382 (487)
....+..++..+. .. +..++||++...|..+. +.+++||..-..+.+
T Consensus 99 -------~~~~l~~li~~~~---~~-g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 99 -------EQALLFSIFNRFR---NS-GKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp -------HHHHHHHHHHHHH---HH-TCCEEEEEESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred -------HHHHHHHHHHHHH---Hc-CCcEEEEECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 1222333333322 11 12235554444554442 899999976555543
No 106
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.93 E-value=1.2e-09 Score=100.83 Aligned_cols=103 Identities=19% Similarity=0.168 Sum_probs=63.1
Q ss_pred cCCCCCCcccccChHH----HHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEE
Q 011393 208 DRSPSVKWEDVAGLEK----AKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNV 280 (487)
Q Consensus 208 ~~~~~~~~~di~G~~~----~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v 280 (487)
.++.+.+|+++++.+. +.+.+..++... + ....+.+++|+||||||||+||+++++++ +.+++.+
T Consensus 17 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 17 REILRASLSDVDLNDDGRIKAIRFAERFVAEY---E-----PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp GGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHC---C-----SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHcCCHhhccCCChhHHHHHHHHHHHHHHh---h-----hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3445678999998553 333444443211 0 01123789999999999999999999986 6788888
Q ss_pred ecCccchhccchh-HHHHHHHHHHHHhcCCcEEEechhhhh
Q 011393 281 SASSLTSKWVGEG-EKLVRTLFMVAISRQPCVIFIDEIDSI 320 (487)
Q Consensus 281 ~~~~l~~~~~g~~-~~~i~~~f~~a~~~~p~Il~IDEiD~l 320 (487)
++.++...+.... ...+..++.... .+.+|||||++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 89 YVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp EHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred EhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 8876644322110 001122233222 3469999999765
No 107
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.92 E-value=2.4e-10 Score=90.13 Aligned_cols=80 Identities=21% Similarity=0.311 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhccccccCCCCcHHHHHHHHHhh
Q 011393 386 NVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVI 465 (487)
Q Consensus 386 ~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~~~~~~l~~~df~~al~~~ 465 (487)
++|.+||+.++++.++. ++.+++.||..|+||||+||.++|++|++.|+++. ...|+++||..|+.++
T Consensus 1 ~~R~~Il~~~l~~~~~~-~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~-----------~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-----------RYVILQSDLEEAYATQ 68 (82)
T ss_dssp -------------CEEC-TTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT-----------CSEECHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------cCCcCHHHHHHHHHHH
Confidence 46889999999876653 56789999999999999999999999999999873 2469999999999998
Q ss_pred C-CCCCHHHHHHH
Q 011393 466 R-PSLNKSKWEEL 477 (487)
Q Consensus 466 ~-ps~s~~~i~~~ 477 (487)
. |+.++++++-|
T Consensus 69 ~~~~~~~~~~~~y 81 (82)
T 2dzn_B 69 VKTDNTVDKFDFY 81 (82)
T ss_dssp CC-----------
T ss_pred HcCcCChHHHHhh
Confidence 4 67777766544
No 108
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.85 E-value=2.4e-08 Score=100.04 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=109.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CC-eEEEEecCccchhccchhHHHHHHHHHHHH----hcCCcEEEechhhh
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QA-TFFNVSASSLTSKWVGEGEKLVRTLFMVAI----SRQPCVIFIDEIDS 319 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~-~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~ 319 (487)
..+.+|||||+|.||++.++.+++.+ +. ++..+... + ...++.+++.+. .....||+|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~------~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---P------NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---T------TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---C------CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 35689999999999999999998864 32 22222111 1 122344444332 34567999999987
Q ss_pred -hhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC-----CCCCCHHHHcccccEEEccCCCHHHHHHHHH
Q 011393 320 -IMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK-----PQELDDAVLRRLVKRIYVPLPDENVRRLLLK 393 (487)
Q Consensus 320 -l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~-----~~~ld~al~~Rf~~~i~i~~Pd~~~r~~il~ 393 (487)
+. ....+.|+..++.. +...++|+++++. ...+.+++.+|+. .+.+..++..+....+.
T Consensus 88 kl~-----------~~~~~aLl~~le~p---~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~-~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 88 GPN-----------AAINEQLLTLTGLL---HDDLLLIVRGNKLSKAQENAAWFTALANRSV-QVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp CCC-----------TTHHHHHHHHHTTC---BTTEEEEEEESCCCTTTTTSHHHHHHTTTCE-EEEECCCCTTHHHHHHH
T ss_pred CCC-----------hHHHHHHHHHHhcC---CCCeEEEEEcCCCChhhHhhHHHHHHHhCce-EEEeeCCCHHHHHHHHH
Confidence 62 22445677777632 2233444454432 2346778888986 68898999999999999
Q ss_pred HHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 011393 394 HKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAM 432 (487)
Q Consensus 394 ~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~ 432 (487)
..+...++.++++.+..|+..+.| +.+++.+.++..+.
T Consensus 153 ~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l 190 (343)
T 1jr3_D 153 ARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSL 190 (343)
T ss_dssp HHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHH
Confidence 999999999999999999999876 66667666666554
No 109
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.84 E-value=3e-09 Score=98.35 Aligned_cols=127 Identities=14% Similarity=0.148 Sum_probs=78.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH--------cC-CeEEEEecCccchhcc----------ch-----hHHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE--------SQ-ATFFNVSASSLTSKWV----------GE-----GEKLVRTLFMVAI 305 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~--------~~-~~~~~v~~~~l~~~~~----------g~-----~~~~i~~~f~~a~ 305 (487)
.-+|++|+||+|||++|..++.. .| .+++..++.++...+. .. ....+..++..+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~- 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP- 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc-
Confidence 46899999999999999886544 34 6666666665543221 11 112223222112
Q ss_pred hcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccCCCH
Q 011393 306 SRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDE 385 (487)
Q Consensus 306 ~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~Pd~ 385 (487)
...++||+|||++.+++.+...... . .++..+.... ...+-||.+++.+..|+.++++|+...+++..|..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~--~----rll~~l~~~r---~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI--P----ENVQWLNTHR---HQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKM 155 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC--C----HHHHGGGGTT---TTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSS
T ss_pred ccCceEEEEEChhhhccCccccchh--H----HHHHHHHhcC---cCCeEEEEECCCHHHHhHHHHHHhheEEEEcCccc
Confidence 3457899999999998765322111 1 2444443221 22345666777799999999999998888887644
Q ss_pred H
Q 011393 386 N 386 (487)
Q Consensus 386 ~ 386 (487)
.
T Consensus 156 ~ 156 (199)
T 2r2a_A 156 G 156 (199)
T ss_dssp C
T ss_pred C
Confidence 3
No 110
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.80 E-value=2e-09 Score=105.91 Aligned_cols=117 Identities=18% Similarity=0.271 Sum_probs=65.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCe--EEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQAT--FFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMA 326 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~--~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~ 326 (487)
+..++|+||||||||+||.++|.+.+.+ |+.+...+....+....+..+..+++...... +||||+++.+......
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGG 200 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccccc
Confidence 4568999999999999999999875544 55552233333333445555555666554443 9999999998654322
Q ss_pred C-cchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHH
Q 011393 327 N-ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAV 370 (487)
Q Consensus 327 ~-~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al 370 (487)
. ......+...+++..|.+.... ..+.+|.++| +...++++
T Consensus 201 ~s~~G~v~~~lrqlL~~L~~~~k~--~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 201 NTTSGGISRGAFDLLSDIGAMAAS--RGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------CCHHHHHHHHHHHHHHHH--HTCEEEEECC-CSSCSSSH
T ss_pred ccccchHHHHHHHHHHHHHHHHhh--CCCEEEEEeC-CcccchhH
Confidence 1 1001122233444444332211 1256777777 55555543
No 111
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.69 E-value=4.1e-07 Score=111.25 Aligned_cols=164 Identities=13% Similarity=0.118 Sum_probs=104.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE 328 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~ 328 (487)
..++++.||+|||||.+++++|+.+|.+++.++|++-+.. ..+..+|..+... ++++++||++.+-..
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~-Gaw~~~DE~nr~~~e----- 712 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQI-GAWGCFDEFNRLDEK----- 712 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCHH-----
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhc-CCEeeehhhhhcChH-----
Confidence 3679999999999999999999999999999999876542 3345556555333 479999999987321
Q ss_pred chHHHHHHHHHH----HHh---------cCCCCCCCCcEEEEEecC----CCCCCCHHHHcccccEEEccCCCHHHHHHH
Q 011393 329 NDASRRLKSEFL----IQF---------DGVTSNPNDLVIVMGATN----KPQELDDAVLRRLVKRIYVPLPDENVRRLL 391 (487)
Q Consensus 329 ~~~~~~~~~~ll----~~l---------~~~~~~~~~~vivI~ttn----~~~~ld~al~~Rf~~~i~i~~Pd~~~r~~i 391 (487)
...++.+.+ ..+ +|..-.....+.|++|.| ....|++++++||. .+.+..||.+...+|
T Consensus 713 ---vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr-~v~m~~Pd~~~i~ei 788 (2695)
T 4akg_A 713 ---VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFR-EFSMKSPQSGTIAEM 788 (2695)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEE-EEECCCCCHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheE-EEEeeCCCHHHHHHH
Confidence 122222222 222 111111123466777888 34579999999996 699999999888877
Q ss_pred HHHHhccCCCCCChhhHH-------HHHHHcC-----CCCHHHHHHHHHHHH
Q 011393 392 LKHKLKGQAFSLPGGDLE-------RLVRETE-----GYSGSDLQALCEEAA 431 (487)
Q Consensus 392 l~~~l~~~~~~l~~~~l~-------~La~~t~-----G~s~~dL~~lv~~A~ 431 (487)
+.... |+........ .+.+... .|.-+.|+.++..|.
T Consensus 789 ~l~s~---Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag 837 (2695)
T 4akg_A 789 ILQIM---GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCS 837 (2695)
T ss_dssp HHHHH---HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHH
T ss_pred HHHhc---CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHH
Confidence 54322 2221222111 1122222 356788888877653
No 112
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.68 E-value=7.8e-09 Score=102.21 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=59.6
Q ss_pred CCCCcccccChH----HHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEec
Q 011393 211 PSVKWEDVAGLE----KAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSA 282 (487)
Q Consensus 211 ~~~~~~di~G~~----~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~ 282 (487)
.+.+|+++.+.. .+.+.+.+++... + ..+..+++||||||||||+||+++|+++ +.+++.+++
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~~---~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQY---P------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHHC---S------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHhc---c------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 457899988643 2333444444211 0 1125789999999999999999999864 478888887
Q ss_pred Cccchhccchh-HHHHHHHHHHHHhcCCcEEEechhhhh
Q 011393 283 SSLTSKWVGEG-EKLVRTLFMVAISRQPCVIFIDEIDSI 320 (487)
Q Consensus 283 ~~l~~~~~g~~-~~~i~~~f~~a~~~~p~Il~IDEiD~l 320 (487)
.++...+.... ...+..++... ..+.+|||||++..
T Consensus 190 ~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 190 PSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC-
T ss_pred HHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 76654332210 11111122222 24569999999654
No 113
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.66 E-value=1.2e-07 Score=87.08 Aligned_cols=109 Identities=16% Similarity=0.182 Sum_probs=60.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANE 328 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~ 328 (487)
.+++|||||||||||++|.++|+.+...++.+..+.. ..| +.. .....||+|||+|.-+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-~f~-----------l~~--l~~~kIiiLDEad~~~------- 116 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-HFW-----------LEP--LTDTKVAMLDDATTTC------- 116 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-CGG-----------GGG--GTTCSSEEEEEECHHH-------
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-hhh-----------hcc--cCCCCEEEEECCCchh-------
Confidence 4579999999999999999999998766543321110 000 011 1123599999997421
Q ss_pred chHHHHHHHHHHHHhcCCC------CCCC---CcEEEEEecCCC---CCCCHHHHcccccEEEccC
Q 011393 329 NDASRRLKSEFLIQFDGVT------SNPN---DLVIVMGATNKP---QELDDAVLRRLVKRIYVPL 382 (487)
Q Consensus 329 ~~~~~~~~~~ll~~l~~~~------~~~~---~~vivI~ttn~~---~~ld~al~~Rf~~~i~i~~ 382 (487)
.+.+...+...++|.. .+.. ....+|.|||.. +..-..|.+|+. .+.++.
T Consensus 117 ---~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~-~f~F~~ 178 (212)
T 1tue_A 117 ---WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRIT-VFEFPN 178 (212)
T ss_dssp ---HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCE-EEECCS
T ss_pred ---HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEE-EEEcCC
Confidence 1222223344455531 0000 011345567753 223467888987 566664
No 114
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.57 E-value=6.1e-07 Score=110.45 Aligned_cols=139 Identities=23% Similarity=0.286 Sum_probs=89.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH-cCCeEEEEecCccchhccchhHHHHHHHHHHH----H------------hcCCcE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE-SQATFFNVSASSLTSKWVGEGEKLVRTLFMVA----I------------SRQPCV 311 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~-~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a----~------------~~~p~I 311 (487)
.++|||+||||||||+++..+... .+.+++.++++.-++. ..+...++.. + .++..|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH------HHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH------HHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 467999999999999887665444 4667788888765532 2233333321 0 012259
Q ss_pred EEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCC------CCcEEEEEecCCC-----CCCCHHHHcccccEEEc
Q 011393 312 IFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNP------NDLVIVMGATNKP-----QELDDAVLRRLVKRIYV 380 (487)
Q Consensus 312 l~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~vivI~ttn~~-----~~ld~al~~Rf~~~i~i 380 (487)
|||||++.- ..+.-..+....++.+++.. .+..... -.++.+|+|+|.| ..|+++++|||. .+.+
T Consensus 1378 lFiDDiNmp--~~D~yGtQ~~ielLrqlld~-~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~-vi~i 1453 (3245)
T 3vkg_A 1378 VFCDEINLP--STDKYGTQRVITFIRQMVEK-GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAP-ILLV 1453 (3245)
T ss_dssp EEETTTTCC--CCCTTSCCHHHHHHHHHHHH-SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCC-EEEC
T ss_pred EEecccCCC--CccccccccHHHHHHHHHHc-CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhce-EEEe
Confidence 999999853 22212222334444455432 1221111 1347889999988 468999999998 5999
Q ss_pred cCCCHHHHHHHHHHHhc
Q 011393 381 PLPDENVRRLLLKHKLK 397 (487)
Q Consensus 381 ~~Pd~~~r~~il~~~l~ 397 (487)
+.|+.+....|+..++.
T Consensus 1454 ~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1454 DFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999876654
No 115
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.43 E-value=2.9e-07 Score=88.30 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=24.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQA 275 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~ 275 (487)
..+|+||||||||||++|+++|+..+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 568999999999999999999998654
No 116
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.42 E-value=4.2e-07 Score=107.96 Aligned_cols=112 Identities=20% Similarity=0.254 Sum_probs=77.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccch----hccc------------hhHHHHHHHHHHHHhc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTS----KWVG------------EGEKLVRTLFMVAISR 307 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~----~~~g------------~~~~~i~~~f~~a~~~ 307 (487)
.++.+++|+||||||||+||.+++.+. |..+..++...... ...| ..++.++.++..++..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~ 1504 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1504 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcC
Confidence 467889999999999999999997764 56777777664321 1112 3456777777788889
Q ss_pred CCcEEEechhhhhhccC---CC-C--cchHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 011393 308 QPCVIFIDEIDSIMSTR---MA-N--ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 360 (487)
Q Consensus 308 ~p~Il~IDEiD~l~~~~---~~-~--~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~tt 360 (487)
+|++||||+++.+.+.. .+ + ......+++.++|..|.+.....+ ++||++.
T Consensus 1505 ~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~--v~VI~tN 1561 (2050)
T 3cmu_A 1505 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN--TLLIFIN 1561 (2050)
T ss_dssp CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT--CEEEEEE
T ss_pred CCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC--cEEEEEc
Confidence 99999999999887642 11 1 111245677777777776654433 5565543
No 117
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.33 E-value=3.2e-06 Score=76.49 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=23.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATF 277 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~ 277 (487)
.+.|.||+|+|||||++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999876444
No 118
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.22 E-value=5.9e-06 Score=101.94 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=87.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhccCCCCcc
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMSTRMANEN 329 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~ 329 (487)
.+..+.||+|||||.+++.+|+.+|..++.++|++-... ..+..+|..+.. .++..++|||+.+-.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~-~GaW~cfDEfNrl~~------- 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQ-CGAWGCFDEFNRLEE------- 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHH-HTCEEEEETTTSSCH-------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhh-cCcEEEehhhhcCCH-------
Confidence 467899999999999999999999999999999876532 234455554433 357999999998721
Q ss_pred hHHHHHHHHHHHH-------------hc-CCCCCCCCcEEEEEecCC----CCCCCHHHHcccccEEEccCCCHHHHHHH
Q 011393 330 DASRRLKSEFLIQ-------------FD-GVTSNPNDLVIVMGATNK----PQELDDAVLRRLVKRIYVPLPDENVRRLL 391 (487)
Q Consensus 330 ~~~~~~~~~ll~~-------------l~-~~~~~~~~~vivI~ttn~----~~~ld~al~~Rf~~~i~i~~Pd~~~r~~i 391 (487)
....++.+.+.. +. |..-.-...+.|+.|.|+ ...|++.++.||. .+.+..||.+...+|
T Consensus 671 -~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr-~v~m~~Pd~~~i~ei 748 (3245)
T 3vkg_A 671 -RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFR-SMAMIKPDREMIAQV 748 (3245)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEE-EEECCSCCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcE-EEEEeCCCHHHHHHH
Confidence 112222222211 11 211111234677778873 4689999999997 599999999887777
Q ss_pred HH
Q 011393 392 LK 393 (487)
Q Consensus 392 l~ 393 (487)
+-
T Consensus 749 ~L 750 (3245)
T 3vkg_A 749 ML 750 (3245)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 119
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.18 E-value=2.9e-05 Score=83.17 Aligned_cols=177 Identities=13% Similarity=0.096 Sum_probs=99.2
Q ss_pred CCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHH-------cCCeEEEEecCc
Q 011393 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE-------SQATFFNVSASS 284 (487)
Q Consensus 212 ~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~-------~~~~~~~v~~~~ 284 (487)
|.....++|.+..++.|.+.+... ....+.|+|+||+|+|||+||+.+++. ....++.++.+.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 445667999999999999888421 122457899999999999999999642 222233333322
Q ss_pred c-----chhc------cc----------hh-HHHHHHHHHHHHh-cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHH
Q 011393 285 L-----TSKW------VG----------EG-EKLVRTLFMVAIS-RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLI 341 (487)
Q Consensus 285 l-----~~~~------~g----------~~-~~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~ 341 (487)
. .... .+ .. ......+...... ..|.+|+||+++.. ..+.
T Consensus 190 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----------------~~l~ 252 (591)
T 1z6t_A 190 QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----------------WVLK 252 (591)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----------------HHHH
T ss_pred CchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----------------HHHH
Confidence 1 0000 00 01 1111222222222 26899999999743 1122
Q ss_pred HhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEc---cCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCC
Q 011393 342 QFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYV---PLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGY 418 (487)
Q Consensus 342 ~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i---~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~ 418 (487)
.+ . ..+.||.||+.+..... . . ...+.+ ...+.++-.++|...+...... .+.....|++.+.|.
T Consensus 253 ~l-----~--~~~~ilvTsR~~~~~~~-~-~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~i~~~~~G~ 320 (591)
T 1z6t_A 253 AF-----D--SQCQILLTTRDKSVTDS-V-M--GPKYVVPVESSLGKEKGLEILSLFVNMKKAD-LPEQAHSIIKECKGS 320 (591)
T ss_dssp TT-----C--SSCEEEEEESCGGGGTT-C-C--SCEEEEECCSSCCHHHHHHHHHHHHTSCGGG-SCTHHHHHHHHHTTC
T ss_pred Hh-----c--CCCeEEEECCCcHHHHh-c-C--CCceEeecCCCCCHHHHHHHHHHHhCCCccc-ccHHHHHHHHHhCCC
Confidence 22 1 12455666654331110 0 0 223344 3578888888988877542111 245678999999884
Q ss_pred CHHHHHHHHH
Q 011393 419 SGSDLQALCE 428 (487)
Q Consensus 419 s~~dL~~lv~ 428 (487)
|-.|..+..
T Consensus 321 -PLal~~~a~ 329 (591)
T 1z6t_A 321 -PLVVSLIGA 329 (591)
T ss_dssp -HHHHHHHHH
T ss_pred -cHHHHHHHH
Confidence 666665544
No 120
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.14 E-value=8.2e-07 Score=89.89 Aligned_cols=106 Identities=17% Similarity=0.173 Sum_probs=63.3
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccchhccchhHHHHHHHHHHHHhcCCcEEEechhhhhhc-cC
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPCVIFIDEIDSIMS-TR 324 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~-~~ 324 (487)
..++..++|+||||+|||||+++++...+..++.+....-. . -|......+..++++||++.+.. .+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~----------~--~~~lg~~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR----------L--NFELGVAIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT----------H--HHHHGGGTTCSCEEETTCCCSTTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh----------H--HHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 34567899999999999999999999988776654332210 0 01111123456889999998865 22
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHc
Q 011393 325 MANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR 372 (487)
Q Consensus 325 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~ 372 (487)
.-....... ....+...++|. +.|+.++|+++.+ +++++
T Consensus 234 ~l~~~~~~~-~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~ 272 (377)
T 1svm_A 234 DLPSGQGIN-NLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFP 272 (377)
T ss_dssp TCCCCSHHH-HHHTTHHHHHCS-------SCEEECCSSSCCE-EECCC
T ss_pred hccccCcch-HHHHHHHHhcCC-------CeEeeccCchhhH-HHhhc
Confidence 111111110 122334445542 3466778888887 55555
No 121
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.13 E-value=4.4e-06 Score=86.98 Aligned_cols=67 Identities=19% Similarity=0.363 Sum_probs=41.3
Q ss_pred hccccCCCCCCccccc-ChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc---CC-eEE
Q 011393 204 TAIVDRSPSVKWEDVA-GLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QA-TFF 278 (487)
Q Consensus 204 ~~~~~~~~~~~~~di~-G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~---~~-~~~ 278 (487)
..|+.+++|.+|+++- ++..+...+...+.. ....++|.||||||||+++.+++..+ +. .++
T Consensus 12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~-------------~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il 78 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE-------------KKHHVTINGPAGTGATTLTKFIIEALISTGETGII 78 (459)
T ss_dssp ---------CCSSCCCHHHHHHHHHHHHHHHS-------------SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCccccCCCccccCCHHHHHHHHHHHHHHhc-------------CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEE
Confidence 3688899999999986 566666666555531 12379999999999999999998875 33 455
Q ss_pred EEecC
Q 011393 279 NVSAS 283 (487)
Q Consensus 279 ~v~~~ 283 (487)
.+..+
T Consensus 79 ~~a~T 83 (459)
T 3upu_A 79 LAAPT 83 (459)
T ss_dssp EEESS
T ss_pred EecCc
Confidence 55443
No 122
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.95 E-value=0.00012 Score=84.76 Aligned_cols=179 Identities=11% Similarity=0.059 Sum_probs=103.6
Q ss_pred CCCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHH-------cCCeEEEEecC
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE-------SQATFFNVSAS 283 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~-------~~~~~~~v~~~ 283 (487)
.|.....++|.+..++.|.+.+... ....+-|.|+|+.|+|||+||+.+++. ....++.++.+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 4556677999999999999988421 122456889999999999999998765 22234445443
Q ss_pred ccchh---------------------ccchhHHHHHHHHHHHHh--cCCcEEEechhhhhhccCCCCcchHHHHHHHHHH
Q 011393 284 SLTSK---------------------WVGEGEKLVRTLFMVAIS--RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFL 340 (487)
Q Consensus 284 ~l~~~---------------------~~g~~~~~i~~~f~~a~~--~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll 340 (487)
..... ........+...+..... .++.+|+||+++...
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------- 249 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------- 249 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------------
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------------
Confidence 31100 000111122222222222 337899999997430
Q ss_pred HHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccccEEEccC-CCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCC
Q 011393 341 IQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPL-PDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYS 419 (487)
Q Consensus 341 ~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~~i~i~~-Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s 419 (487)
.++.+ .++ ..||.||+.+.-... . ......+.++. .+.++-.++|........-. .......|++.+.|.
T Consensus 250 -~~~~~--~~~--~~ilvTtR~~~~~~~-~-~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~gl- 320 (1249)
T 3sfz_A 250 -VLKAF--DNQ--CQILLTTRDKSVTDS-V-MGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGS- 320 (1249)
T ss_dssp -HHTTT--CSS--CEEEEEESSTTTTTT-C-CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTC-
T ss_pred -HHHhh--cCC--CEEEEEcCCHHHHHh-h-cCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCC-
Confidence 11222 112 356667765432211 0 11224567775 78888888988877543322 234678899999874
Q ss_pred HHHHHHHH
Q 011393 420 GSDLQALC 427 (487)
Q Consensus 420 ~~dL~~lv 427 (487)
|-.|..+.
T Consensus 321 PLal~~~~ 328 (1249)
T 3sfz_A 321 PLVVSLIG 328 (1249)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65565443
No 123
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.82 E-value=5.9e-05 Score=75.54 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=50.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhc----------------cchhHHHHHHHHHHHHhc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKW----------------VGEGEKLVRTLFMVAISR 307 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~----------------~g~~~~~i~~~f~~a~~~ 307 (487)
.++.-++|+||||+|||+|+..++..+ +..+++++........ ....+..+..+....+..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSG 138 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhc
Confidence 345678999999999999999998763 6677777775532110 011222333333333456
Q ss_pred CCcEEEechhhhhhc
Q 011393 308 QPCVIFIDEIDSIMS 322 (487)
Q Consensus 308 ~p~Il~IDEiD~l~~ 322 (487)
.+.+++||.+..+.+
T Consensus 139 ~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 139 VVDLIVVDSVAALVP 153 (356)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCeEEehHhhhhcC
Confidence 789999999998875
No 124
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.80 E-value=3.9e-05 Score=72.01 Aligned_cols=77 Identities=13% Similarity=0.223 Sum_probs=49.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH--c-------CCeEEEEecCccch-h----c---cc----------------hh
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE--S-------QATFFNVSASSLTS-K----W---VG----------------EG 293 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~--~-------~~~~~~v~~~~l~~-~----~---~g----------------~~ 293 (487)
.++.-++|+||||+|||+|++.++.. . +...++++...... . + .+ ..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 44567899999999999999999985 2 45677777655200 0 0 00 00
Q ss_pred H---HHHHHHHHHHHhcCCcEEEechhhhhhcc
Q 011393 294 E---KLVRTLFMVAISRQPCVIFIDEIDSIMST 323 (487)
Q Consensus 294 ~---~~i~~~f~~a~~~~p~Il~IDEiD~l~~~ 323 (487)
. ..+..+........|.+|+||++..+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 1 11222334444568999999999988643
No 125
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.79 E-value=0.00018 Score=66.75 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=27.0
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEec
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~ 282 (487)
++..++|+||+|+|||+|++.++... +..++.++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 45678999999999999999998653 455555554
No 126
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.78 E-value=0.00059 Score=72.52 Aligned_cols=170 Identities=12% Similarity=0.075 Sum_probs=95.8
Q ss_pred cChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHH----HcCCe---EEEEecCccc-----
Q 011393 219 AGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVAS----ESQAT---FFNVSASSLT----- 286 (487)
Q Consensus 219 ~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~----~~~~~---~~~v~~~~l~----- 286 (487)
+|.+..++.|.+++... .....+.|.|+|++|+|||+||+.+++ ..... .+.++.+...
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49999999999888421 112346789999999999999999997 23222 2233333210
Q ss_pred ---hh---ccch-------------hHHHHHHHHHHHHhcC-CcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCC
Q 011393 287 ---SK---WVGE-------------GEKLVRTLFMVAISRQ-PCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGV 346 (487)
Q Consensus 287 ---~~---~~g~-------------~~~~i~~~f~~a~~~~-p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 346 (487)
.. .++. ....+...+....... +.+|+||+++.. ..+ .+. ..
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~------------~~~--~~~-~~--- 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE------------ETI--RWA-QE--- 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH------------HHH--HHH-HH---
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc------------hhh--ccc-cc---
Confidence 00 0000 0111223333333444 889999999754 111 111 11
Q ss_pred CCCCCCcEEEEEecCCCCCCCHHHHccc---ccEEEccCCCHHHHHHHHHHHhccCCC-CCChhhHHHHHHHcCCCCHHH
Q 011393 347 TSNPNDLVIVMGATNKPQELDDAVLRRL---VKRIYVPLPDENVRRLLLKHKLKGQAF-SLPGGDLERLVRETEGYSGSD 422 (487)
Q Consensus 347 ~~~~~~~vivI~ttn~~~~ld~al~~Rf---~~~i~i~~Pd~~~r~~il~~~l~~~~~-~l~~~~l~~La~~t~G~s~~d 422 (487)
++ ..||.||+... +...+ ...+.++..+.++-.++|..+...... .-.......|++.+.| .|-.
T Consensus 264 ---~g--s~ilvTTR~~~-----v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~G-lPLA 332 (549)
T 2a5y_B 264 ---LR--LRCLVTTRDVE-----ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSG-NPAT 332 (549)
T ss_dssp ---TT--CEEEEEESBGG-----GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTT-CHHH
T ss_pred ---CC--CEEEEEcCCHH-----HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCC-ChHH
Confidence 12 34556666422 11222 245888889999999999887543321 1012246678888877 4655
Q ss_pred HHHH
Q 011393 423 LQAL 426 (487)
Q Consensus 423 L~~l 426 (487)
|..+
T Consensus 333 l~~~ 336 (549)
T 2a5y_B 333 LMMF 336 (549)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 127
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.76 E-value=8.5e-05 Score=74.81 Aligned_cols=76 Identities=22% Similarity=0.344 Sum_probs=49.9
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhc----cc------------hhHHHHHHHHHHHHhc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKW----VG------------EGEKLVRTLFMVAISR 307 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~----~g------------~~~~~i~~~f~~a~~~ 307 (487)
.++.-++|+||||+|||+||..+|... +.++++++.......+ .| ..+..+..+....+..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~ 151 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG 151 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence 345678999999999999999997763 6677777765432211 01 1122222222233346
Q ss_pred CCcEEEechhhhhhc
Q 011393 308 QPCVIFIDEIDSIMS 322 (487)
Q Consensus 308 ~p~Il~IDEiD~l~~ 322 (487)
.+.+|+||.+..+.+
T Consensus 152 ~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 152 AIDVVVVDSVAALTP 166 (366)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCEEEEeChHHhcc
Confidence 789999999999975
No 128
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.73 E-value=4.2e-05 Score=76.66 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=49.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhc----cc------------hhHHHHHHHHHHHHhc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKW----VG------------EGEKLVRTLFMVAISR 307 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~----~g------------~~~~~i~~~f~~a~~~ 307 (487)
.++.-++|+||||+|||+|+..++... +..+++++........ .| ..+..+..+...++..
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSG 138 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcC
Confidence 345679999999999999999998653 5677777765422111 11 1122222222233356
Q ss_pred CCcEEEechhhhhhc
Q 011393 308 QPCVIFIDEIDSIMS 322 (487)
Q Consensus 308 ~p~Il~IDEiD~l~~ 322 (487)
.|.+|+||++..+.+
T Consensus 139 ~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 139 ALDIIVIDSVAALVP 153 (349)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcChHhhcc
Confidence 799999999999874
No 129
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.73 E-value=5.6e-05 Score=74.88 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=51.4
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---------CCeEEEEecCccc-hh-------ccc----------------hh
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSASSLT-SK-------WVG----------------EG 293 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---------~~~~~~v~~~~l~-~~-------~~g----------------~~ 293 (487)
.++.-++|+||||+|||+++..+|... +..+++++..... .. ..+ ..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCH
Confidence 445679999999999999999998874 5677888876521 00 000 01
Q ss_pred H---HHHHHHHHHHHh-cCCcEEEechhhhhhcc
Q 011393 294 E---KLVRTLFMVAIS-RQPCVIFIDEIDSIMST 323 (487)
Q Consensus 294 ~---~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~ 323 (487)
+ ..+..+...... ..+.+|+||.+..+...
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 1 122333344444 67899999999999753
No 130
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.70 E-value=0.00017 Score=66.40 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=31.8
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~ 284 (487)
.++.-++|+||||+|||+|++.+|...+..++.++...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 45567899999999999999999986677888887654
No 131
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.68 E-value=7.7e-05 Score=66.56 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=30.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~ 283 (487)
..|+|.|+||+||||+++.++..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 5689999999999999999999999888876543
No 132
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.67 E-value=0.0001 Score=73.58 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=50.4
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH---------cCCeEEEEecCccch-h----c---cc----------------hh
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE---------SQATFFNVSASSLTS-K----W---VG----------------EG 293 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~---------~~~~~~~v~~~~l~~-~----~---~g----------------~~ 293 (487)
.++.-++|+||||+|||+|+..+|.. .+..+++++...... . + .+ ..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCH
Confidence 44566899999999999999999886 256778887765211 0 0 00 01
Q ss_pred H---HHHHHHHHHHHh--cCCcEEEechhhhhhcc
Q 011393 294 E---KLVRTLFMVAIS--RQPCVIFIDEIDSIMST 323 (487)
Q Consensus 294 ~---~~i~~~f~~a~~--~~p~Il~IDEiD~l~~~ 323 (487)
+ ..+..+...... ..+.+|+||.+..+...
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 1 122223334444 67889999999998754
No 133
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.66 E-value=0.00022 Score=73.23 Aligned_cols=205 Identities=15% Similarity=0.142 Sum_probs=95.0
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh----------------cc----chhHHHHHHHHHHH
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK----------------WV----GEGEKLVRTLFMVA 304 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~----------------~~----g~~~~~i~~~f~~a 304 (487)
++..++|.||+|+||||++..+|..+ +..+..+++...... +. ..........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46778999999999999999998764 666666665422110 00 01122233444555
Q ss_pred HhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHcccc-----cEEE
Q 011393 305 ISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLV-----KRIY 379 (487)
Q Consensus 305 ~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~-----~~i~ 379 (487)
....+.+|+||....+... .+.... ..+..+...+. +...++|+-++...+. ..+.++|. ..+.
T Consensus 176 ~~~~~DvvIIDTaGr~~~~---~d~~lm-~el~~i~~~~~-----pd~vlLVlDa~~gq~a--~~~a~~f~~~~~~~gVI 244 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG---EETKLL-EEMKEMYDVLK-----PDDVILVIDASIGQKA--YDLASRFHQASPIGSVI 244 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC---CTTHHH-HHHHHHHHHHC-----CSEEEEEEEGGGGGGG--HHHHHHHHHHCSSEEEE
T ss_pred HhcCCCEEEEECCCCcccc---CCHHHH-HHHHHHHHhhC-----CcceEEEEeCccchHH--HHHHHHHhcccCCcEEE
Confidence 4557889999988543100 111111 12222333331 2223444444432221 12223332 2234
Q ss_pred ccCCCHHHH----HHHHHHH-hc----cCCCC---CChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhhccchhcccc
Q 011393 380 VPLPDENVR----RLLLKHK-LK----GQAFS---LPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKA 447 (487)
Q Consensus 380 i~~Pd~~~r----~~il~~~-l~----~~~~~---l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~~~~~~~~~~ 447 (487)
+.-.|...+ ..+.... +. ..|-. +.....+.++...-|+ +|+..|++.|....-.+...... .+-
T Consensus 245 lTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~--gd~~~l~e~~~~~~~~~~~~~~~-~k~ 321 (433)
T 3kl4_A 245 ITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGM--GDIESILEKVKGLEEYDKIQKKM-EDV 321 (433)
T ss_dssp EECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHCS--SHHHHHHHHHHHC--------------
T ss_pred EecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcCC--chHHHHHHHHHHhhhHHHHHHHH-HHH
Confidence 444443222 2222221 00 01111 2233556677666553 68999988876543222111000 001
Q ss_pred ccCC-CCcHHHHHHHHHhhC
Q 011393 448 NQLR-PLRYEDFQKAMAVIR 466 (487)
Q Consensus 448 ~~~~-~l~~~df~~al~~~~ 466 (487)
.... ..+.+||.+.++.++
T Consensus 322 ~~g~~~f~~~d~~~q~~~~~ 341 (433)
T 3kl4_A 322 MEGKGKLTLRDVYAQIIALR 341 (433)
T ss_dssp ------CCHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHH
Confidence 1111 588999988887654
No 134
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.64 E-value=5.7e-05 Score=68.51 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=23.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEe
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE---SQATFFNVS 281 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~ 281 (487)
.-++++||+|+|||+++..++.. .+..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45789999999999999666654 355555443
No 135
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.62 E-value=0.00035 Score=65.62 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.4
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVA 270 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA 270 (487)
.++.-++|.||+|+|||||++.++
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 445679999999999999999998
No 136
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.62 E-value=9.8e-05 Score=74.10 Aligned_cols=75 Identities=21% Similarity=0.272 Sum_probs=49.3
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchhc----cc-----------hhHHHHHHHHH-HHHhcC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKW----VG-----------EGEKLVRTLFM-VAISRQ 308 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~----~g-----------~~~~~i~~~f~-~a~~~~ 308 (487)
+..-++|+||||+|||+||..+|... +.++++++........ .| .....+..++. ..+...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~ 141 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 141 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccC
Confidence 45679999999999999999998763 6678888874322110 00 01112222222 334567
Q ss_pred CcEEEechhhhhhc
Q 011393 309 PCVIFIDEIDSIMS 322 (487)
Q Consensus 309 p~Il~IDEiD~l~~ 322 (487)
+.+|+||.+..+..
T Consensus 142 ~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 142 VDVIVVDSVAALTP 155 (356)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcCHHHhcc
Confidence 89999999999874
No 137
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.59 E-value=0.00015 Score=86.51 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=55.8
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccchhccc----------------hhHHHHHHHHHHHHh
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLTSKWVG----------------EGEKLVRTLFMVAIS 306 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~~~~~g----------------~~~~~i~~~f~~a~~ 306 (487)
..++..++|+||||||||+||.+++.+ .|.+.++++..+....... ..+...+......+.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~ 1157 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1157 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHh
Confidence 456778999999999999999999765 4778888888765433221 112233333444556
Q ss_pred cCCcEEEechhhhhhcc
Q 011393 307 RQPCVIFIDEIDSIMST 323 (487)
Q Consensus 307 ~~p~Il~IDEiD~l~~~ 323 (487)
..|.+|+||++..|.+.
T Consensus 1158 ~~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1158 GAVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp TCCSEEEESCGGGCCCH
T ss_pred CCCCEEEECCccccccc
Confidence 78999999999999553
No 138
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.56 E-value=4.2e-05 Score=68.87 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=29.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
++.|+|.||||+||||+++.+|..++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 467999999999999999999999999887643
No 139
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.51 E-value=0.0019 Score=68.21 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=50.9
Q ss_pred cEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC--CCCHHHHcccccEEEccCCCHHH
Q 011393 310 CVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ--ELDDAVLRRLVKRIYVPLPDENV 387 (487)
Q Consensus 310 ~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~--~ld~al~~Rf~~~i~i~~Pd~~~ 387 (487)
.+|+|||++.|+.... ......+..+... |. .-.|.+|.+|.+|. .++..++.-|..+|.+...+..+
T Consensus 345 ivvVIDE~~~L~~~~~----~~~~~~L~~Iar~--GR----a~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG----KKVEELIARIAQK--AR----AAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHTC----HHHHHHHHHHHHH--CT----TTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhhh----HHHHHHHHHHHHH--Hh----hCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHH
Confidence 5899999998865321 1122222333322 11 22378888888887 78999999999999999999888
Q ss_pred HHHHHH
Q 011393 388 RRLLLK 393 (487)
Q Consensus 388 r~~il~ 393 (487)
...++.
T Consensus 415 sr~ILd 420 (574)
T 2iut_A 415 SRTILD 420 (574)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 877763
No 140
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.47 E-value=0.0024 Score=59.47 Aligned_cols=161 Identities=19% Similarity=0.244 Sum_probs=84.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCc--------cchh----------ccch--hHHHHHHHHHHHHh
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS--------LTSK----------WVGE--GEKLVRTLFMVAIS 306 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~--------l~~~----------~~g~--~~~~i~~~f~~a~~ 306 (487)
..|++.|+|||||||++-.+|..+ |..++.++... +... +.+. .+..+..++ .
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L----~ 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL----K 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH----H
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH----h
Confidence 469999999999999999988764 66665555421 1110 0000 112222222 2
Q ss_pred cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC------------------CCCCCH
Q 011393 307 RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK------------------PQELDD 368 (487)
Q Consensus 307 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~------------------~~~ld~ 368 (487)
..|.+|+|||+-..-... .........+..++ . .+ +=|++|+|. .+.++.
T Consensus 83 ~~pdlvIVDElG~~~~~~--~r~~~~~qDV~~~l---~-----sg--idVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPG--SRHTKRWQDIQELL---A-----AG--IDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp HCCSEEEESCTTCBCCTT--CSSSBHHHHHHHHH---H-----TT--CEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred cCCCEEEEeCCCCCCccc--chhHHHHHHHHHHH---c-----CC--CCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 468999999986431110 11111111122222 1 11 234455541 245678
Q ss_pred HHHcccccEEEccCCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q 011393 369 AVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMP 434 (487)
Q Consensus 369 al~~Rf~~~i~i~~Pd~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a 434 (487)
.++.+.+....++.|..+-+.+ +... .+-..+..-..+... |+..-|.+|-+-|....
T Consensus 151 ~~~~~a~~v~lvD~~p~~l~~r----l~~g-~vy~~~~~~~a~~~~---f~~~nl~~lrelal~~~ 208 (228)
T 2r8r_A 151 WVLQEAFDLVLIDLPPRELLER----LRDG-KVYVPEQARAAIDAF---FTQTNLTALREMAMQTA 208 (228)
T ss_dssp HHHHTCSEEEEBCCCHHHHHHH----HHTT-CCCCTTCCHHHHHHH---CCHHHHHHHHHHHHHHH
T ss_pred HHHhhCCeEEEecCCHHHHHHH----HHCC-CccChhHHHHHHHhh---hchhhHHHHHHHHHHHH
Confidence 8888888788888876664433 2222 221122222233333 67777777766555444
No 141
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.47 E-value=0.00021 Score=66.35 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=28.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---------CCeEEEEecCc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSASS 284 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---------~~~~~~v~~~~ 284 (487)
.+..-+.|.||+|+|||||++.++... +...+.++...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 445678999999999999999999853 33366666543
No 142
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.47 E-value=6.6e-05 Score=68.67 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=29.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
++..|+|.||||+||||+++.+|..++.+++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 4568999999999999999999999999887543
No 143
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.44 E-value=0.00043 Score=64.67 Aligned_cols=72 Identities=18% Similarity=0.160 Sum_probs=44.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCc-------cchhccchh-----HHHHHHHHHHHHh----cC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS-------LTSKWVGEG-----EKLVRTLFMVAIS----RQ 308 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~-------l~~~~~g~~-----~~~i~~~f~~a~~----~~ 308 (487)
+..-++++||+|+|||+++..++... +..++.+.+.. +.+. .|.. -.....+++.+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 34567889999999999998887764 55666664322 1111 1110 0112244444443 35
Q ss_pred CcEEEechhhhh
Q 011393 309 PCVIFIDEIDSI 320 (487)
Q Consensus 309 p~Il~IDEiD~l 320 (487)
+.+|+|||+..|
T Consensus 90 ~dvViIDEaQ~l 101 (223)
T 2b8t_A 90 TKVIGIDEVQFF 101 (223)
T ss_dssp CCEEEECSGGGS
T ss_pred CCEEEEecCccC
Confidence 789999999876
No 144
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.44 E-value=0.00016 Score=77.20 Aligned_cols=97 Identities=23% Similarity=0.320 Sum_probs=54.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccchhcc----chhHHHHHHHHHHH---------HhcCCcEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLTSKWV----GEGEKLVRTLFMVA---------ISRQPCVIF 313 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~~~~~----g~~~~~i~~~f~~a---------~~~~p~Il~ 313 (487)
..++|.||||||||+++.+++.. .+.+++.+.++.-....+ +.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 57899999999999999999875 466666555433211111 11111222222110 011347999
Q ss_pred echhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 011393 314 IDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 362 (487)
Q Consensus 314 IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~ 362 (487)
|||+..+ ....+..++..+. ....++++|-.+.
T Consensus 285 IDEasml-----------~~~~~~~Ll~~~~-----~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMM-----------GDALMLSLLAAVP-----PGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGC-----------CHHHHHHHHTTSC-----TTCEEEEEECTTS
T ss_pred EcCccCC-----------CHHHHHHHHHhCc-----CCCEEEEEecccc
Confidence 9999876 2233444443332 2345777776554
No 145
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.44 E-value=0.00028 Score=71.86 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=47.8
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---------CCeEEEEecCccchh--------ccc------------------
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSASSLTSK--------WVG------------------ 291 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---------~~~~~~v~~~~l~~~--------~~g------------------ 291 (487)
.+..-++|+||||+|||+|++.++-.. +...++++....... .++
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 455679999999999999999776432 345777776542110 001
Q ss_pred -hhHHHHHHHHHHHHhcCCcEEEechhhhhhcc
Q 011393 292 -EGEKLVRTLFMVAISRQPCVIFIDEIDSIMST 323 (487)
Q Consensus 292 -~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~ 323 (487)
.....+..+........|.+|+||++-.++..
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 00112222333344567899999999988754
No 146
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.42 E-value=0.0021 Score=63.01 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=46.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh-------cc-------------chhHHHHHHHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK-------WV-------------GEGEKLVRTLFMV 303 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~-------~~-------------g~~~~~i~~~f~~ 303 (487)
.++..++|.||+|+||||++..+|..+ +..+..+++...... |. +.........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 345678999999999999999998764 555665554322110 10 1111222334555
Q ss_pred HHhcCCcEEEechhh
Q 011393 304 AISRQPCVIFIDEID 318 (487)
Q Consensus 304 a~~~~p~Il~IDEiD 318 (487)
+....+.+|+||+.-
T Consensus 182 a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 ALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 566788999999874
No 147
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.40 E-value=0.0016 Score=68.18 Aligned_cols=76 Identities=18% Similarity=0.336 Sum_probs=49.2
Q ss_pred Cc-EEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC--CCCHHHHcccccEEEccCCCH
Q 011393 309 PC-VIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ--ELDDAVLRRLVKRIYVPLPDE 385 (487)
Q Consensus 309 p~-Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~--~ld~al~~Rf~~~i~i~~Pd~ 385 (487)
|. +|+|||+..++... ... ...++..+-.... .-.+.+|.+|.+|. .++..++..|..+|.+...+.
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~-~~~~l~~Lar~gR--a~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~ 366 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKK-VEELIARLAQKAR--AAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSK 366 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHH-HHHHHHHHHHHCG--GGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSH
T ss_pred CcEEEEEeCHHHHHhhh-------hHH-HHHHHHHHHHHhh--hCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCH
Confidence 53 89999998875421 111 2223322211111 11266777888776 588899999998999999999
Q ss_pred HHHHHHHHH
Q 011393 386 NVRRLLLKH 394 (487)
Q Consensus 386 ~~r~~il~~ 394 (487)
.+...++..
T Consensus 367 ~dsr~ilg~ 375 (512)
T 2ius_A 367 IDSRTILDQ 375 (512)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHhcCC
Confidence 888877653
No 148
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.40 E-value=0.00031 Score=68.78 Aligned_cols=72 Identities=21% Similarity=0.213 Sum_probs=46.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc-----CCeEEEEecCccchh----ccc------------hhHHHHHHHHHH---HHh
Q 011393 251 GLLLFGPPGNGKTMLAKAVASES-----QATFFNVSASSLTSK----WVG------------EGEKLVRTLFMV---AIS 306 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~-----~~~~~~v~~~~l~~~----~~g------------~~~~~i~~~f~~---a~~ 306 (487)
-++|+||||+|||+|+..++... +..+++++...-... ..| ..+...-.+.+. .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 58999999999999988876553 677888887643211 011 112220122222 245
Q ss_pred cCCcEEEechhhhhhc
Q 011393 307 RQPCVIFIDEIDSIMS 322 (487)
Q Consensus 307 ~~p~Il~IDEiD~l~~ 322 (487)
..|.+|+||-|..|.+
T Consensus 110 ~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 110 GEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TCCEEEEEECSTTCBC
T ss_pred cCceEEEEeccccccc
Confidence 6799999999999975
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.39 E-value=0.0011 Score=61.88 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=27.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSAS 283 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~ 283 (487)
.++..++|+||||+|||+++..++.. .+..++.++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 44567899999999999999888654 35566665543
No 150
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.38 E-value=0.0016 Score=66.89 Aligned_cols=204 Identities=16% Similarity=0.103 Sum_probs=101.2
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh--------------------ccchhHHHHHHHHHHH
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK--------------------WVGEGEKLVRTLFMVA 304 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~--------------------~~g~~~~~i~~~f~~a 304 (487)
++..|++.|++|+||||++..+|..+ |..+..+++...... ........+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998764 666766665432110 0112234455667777
Q ss_pred HhcCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--HHHHccccc-EEEcc
Q 011393 305 ISRQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELD--DAVLRRLVK-RIYVP 381 (487)
Q Consensus 305 ~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld--~al~~Rf~~-~i~i~ 381 (487)
......+|+||..-.+ ......... +..+..... +...++|+-++...+.++ ..+...+.. .+-+.
T Consensus 179 ~~~~~DvVIIDTaGrl-----~~d~~lm~e-l~~i~~~~~-----pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIlT 247 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH-----KEDKALIEE-MKQISNVIH-----PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVT 247 (443)
T ss_dssp HHTTCSEEEEECCCCS-----SCCHHHHHH-HHHHHHHHC-----CSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEEE
T ss_pred HhCCCCEEEEECCCcc-----cchHHHHHH-HHHHHHhhc-----CceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEEE
Confidence 7767889999987433 111111111 222222221 222344554443221111 112212221 13334
Q ss_pred CCCHHHHHHHHHHHhccCCCC------------CChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHhh-ccchhccccc
Q 011393 382 LPDENVRRLLLKHKLKGQAFS------------LPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL-GTNILTVKAN 448 (487)
Q Consensus 382 ~Pd~~~r~~il~~~l~~~~~~------------l~~~~l~~La~~t~G~s~~dL~~lv~~A~~~a~~~~-~~~~~~~~~~ 448 (487)
-.|...+...+.......+++ +...+.+.++...-| .+|+..|++.|....-.+. .... ....
T Consensus 248 KlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg--~gd~~~l~e~~~~~~~~~~~~~~~--~~k~ 323 (443)
T 3dm5_A 248 KLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLG--LGDIQGLLEKFKELEKEVEIKEED--IERF 323 (443)
T ss_dssp CCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTT--TTCHHHHHHHHHHHHTTHHHHHHH--HHHH
T ss_pred CCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcC--CCcHHHHHHHHHHhhhhhHHHHHH--HHHH
Confidence 444333332222222222221 223356778877765 3789999887754321110 0000 0001
Q ss_pred cCCCCcHHHHHHHHHhhC
Q 011393 449 QLRPLRYEDFQKAMAVIR 466 (487)
Q Consensus 449 ~~~~l~~~df~~al~~~~ 466 (487)
.....|.+||.+.+..++
T Consensus 324 ~~~~f~l~d~~~q~~~~~ 341 (443)
T 3dm5_A 324 LRGKFTLKDMYAQLEAMR 341 (443)
T ss_dssp HTTCCCHHHHHHHHHHHH
T ss_pred hhCCcCHHHHHHHHHHHH
Confidence 112478888887776544
No 151
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.37 E-value=0.00043 Score=67.30 Aligned_cols=38 Identities=32% Similarity=0.528 Sum_probs=30.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCcc
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l 285 (487)
.+..|+|.||||+||||+++.++.+++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 35678999999999999999999998555666765433
No 152
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.37 E-value=0.00011 Score=65.78 Aligned_cols=32 Identities=47% Similarity=0.688 Sum_probs=28.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
+..|+|+|+||+||||+++.++..++..++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45799999999999999999999999887654
No 153
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.35 E-value=0.00012 Score=64.72 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=27.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
-|+|.||||+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999998886554
No 154
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.34 E-value=0.00041 Score=69.36 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=30.3
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---------CCeEEEEecCc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSASS 284 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---------~~~~~~v~~~~ 284 (487)
.++.-+.|+||||+|||+|++.++... +..+++++..+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 455678999999999999999999876 24667777654
No 155
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.32 E-value=0.00016 Score=64.51 Aligned_cols=29 Identities=31% Similarity=0.620 Sum_probs=26.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
.|+|.||||+||||+++.+|..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988765
No 156
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.31 E-value=0.00027 Score=69.72 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=49.3
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---------------C----CeEEEEecCccc-hh----c---cc--------
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---------------Q----ATFFNVSASSLT-SK----W---VG-------- 291 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---------------~----~~~~~v~~~~l~-~~----~---~g-------- 291 (487)
.++.-++|+||||+|||+++..+|... | ..+++++..... .. + .+
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLD 175 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhc
Confidence 345678999999999999999998752 2 577777766531 10 0 00
Q ss_pred --------hhH---HHHHHHHHHHHh-cCCcEEEechhhhhhcc
Q 011393 292 --------EGE---KLVRTLFMVAIS-RQPCVIFIDEIDSIMST 323 (487)
Q Consensus 292 --------~~~---~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~ 323 (487)
..+ ..+..+...... ..+.+|+||.+..+...
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHH
Confidence 001 122223333444 56789999999998753
No 157
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.31 E-value=0.00012 Score=65.73 Aligned_cols=32 Identities=22% Similarity=0.471 Sum_probs=28.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
..|+|.|+||+|||++++.++..++.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35899999999999999999999999886543
No 158
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.31 E-value=0.00074 Score=63.59 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=28.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~ 283 (487)
.++++||+|+|||.++.+++...+..++.+.+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 599999999999999999999887777766654
No 159
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.30 E-value=0.00013 Score=65.82 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=28.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH-cCCeEEEEe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE-SQATFFNVS 281 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~-~~~~~~~v~ 281 (487)
+..|+|+|+||+||||+++.++.. +|.+++.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 457999999999999999999999 787776543
No 160
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.30 E-value=0.00019 Score=63.56 Aligned_cols=30 Identities=30% Similarity=0.742 Sum_probs=26.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
..|+|.||+|+||||+++.+|..++..++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 469999999999999999999999986654
No 161
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.28 E-value=0.00014 Score=64.26 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=28.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
...|+|.|+||+||||+++.+|..++.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999988764
No 162
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.27 E-value=0.00037 Score=66.30 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=32.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCcc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l 285 (487)
..+..|+|.||||+||||+++.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345679999999999999999999999866666776554
No 163
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.24 E-value=0.0002 Score=65.45 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=28.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
+..|+|.|+||+||||+++.++..++.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 45699999999999999999999999887654
No 164
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.23 E-value=0.00021 Score=64.47 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=27.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
+.-|+|.|+||+||||+++.++..++.+++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4578999999999999999999999987765
No 165
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.23 E-value=0.0013 Score=59.87 Aligned_cols=117 Identities=12% Similarity=0.040 Sum_probs=66.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCc---------cchhcc-------------c----hhHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASS---------LTSKWV-------------G----EGEKLVRTL 300 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~---------l~~~~~-------------g----~~~~~i~~~ 300 (487)
..|++|+++|.||||+|-++|-+ .|..++.+..-. +..... . .........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 46899999999999999999776 477777764321 222210 0 012233344
Q ss_pred HHHHHh----cCCcEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHccccc
Q 011393 301 FMVAIS----RQPCVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVK 376 (487)
Q Consensus 301 f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~Rf~~ 376 (487)
+..++. ....+|+|||+-....-.- --..+++..+.... ...-||.|.|.+ ++.|+...+.
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~--------l~~~ev~~~l~~Rp----~~~~vIlTGr~a---p~~l~e~AD~ 173 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDY--------LPLEEVISALNARP----GHQTVIITGRGC---HRDILDLADT 173 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTS--------SCHHHHHHHHHTSC----TTCEEEEECSSC---CHHHHHHCSE
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCC--------CCHHHHHHHHHhCc----CCCEEEEECCCC---cHHHHHhCcc
Confidence 444433 4568999999966432110 01123455554332 234566677653 6777776665
Q ss_pred EEEcc
Q 011393 377 RIYVP 381 (487)
Q Consensus 377 ~i~i~ 381 (487)
+-++.
T Consensus 174 VTem~ 178 (196)
T 1g5t_A 174 VSELR 178 (196)
T ss_dssp EEECC
T ss_pred eeeec
Confidence 54443
No 166
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.21 E-value=0.0002 Score=63.44 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=27.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
..|+|.|+||+|||++++.++..++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3589999999999999999999999887653
No 167
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.21 E-value=0.00027 Score=65.53 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=28.8
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
++..|+|.|+||+||||+++.+|..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 346799999999999999999999999877654
No 168
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.21 E-value=0.00019 Score=64.82 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=28.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
+..|+|.|+||+||||+++.++..++.+++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 457999999999999999999999998876543
No 169
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.21 E-value=0.00061 Score=65.08 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=30.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCcc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSL 285 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l 285 (487)
+.-|+|.|+||+||||+++.++.. .|..++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 356899999999999999999998 7888876665443
No 170
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.19 E-value=0.00021 Score=68.11 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=28.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEec
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~ 282 (487)
-++|.||||+|||++|+.+|..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998877664
No 171
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.18 E-value=0.00021 Score=64.46 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=27.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
+..|+|.|+||+||||+++.++..++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 3568999999999999999999999987754
No 172
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.17 E-value=0.0002 Score=63.09 Aligned_cols=29 Identities=34% Similarity=0.534 Sum_probs=25.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
-|+|.||||+||||+++.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8889887664
No 173
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.15 E-value=0.00029 Score=64.37 Aligned_cols=31 Identities=23% Similarity=0.515 Sum_probs=27.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
+..|+|.|++|+||||+++.++..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999877765
No 174
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.13 E-value=0.00027 Score=63.40 Aligned_cols=30 Identities=30% Similarity=0.549 Sum_probs=26.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
..|+|.|+||+||||+++.++..++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 468999999999999999999999877654
No 175
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.11 E-value=0.00025 Score=63.92 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=30.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCcc
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l 285 (487)
++..++|.||||+||||+++.++...+...+.++..++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 35678999999999999999999987777777765443
No 176
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.10 E-value=0.0015 Score=59.36 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc
Q 011393 251 GLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.+.|.||+|+|||||++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58899999999999999999875
No 177
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.10 E-value=0.00062 Score=68.24 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=45.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEec-Cccc---------hhccchhHHHHHHHHHHHHhcCCcEEEe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSA-SSLT---------SKWVGEGEKLVRTLFMVAISRQPCVIFI 314 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~-~~l~---------~~~~g~~~~~i~~~f~~a~~~~p~Il~I 314 (487)
...++|.||+|+||||++++++... +..++.+.- .++. ...++.....+...+..+....|.+|++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 3468999999999999999998864 344443321 1111 0111111223445677777889999999
Q ss_pred chh
Q 011393 315 DEI 317 (487)
Q Consensus 315 DEi 317 (487)
||+
T Consensus 203 DEp 205 (356)
T 3jvv_A 203 GEM 205 (356)
T ss_dssp SCC
T ss_pred CCC
Confidence 998
No 178
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.09 E-value=0.0008 Score=64.40 Aligned_cols=70 Identities=23% Similarity=0.361 Sum_probs=44.0
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEecC-cc-c--------hhccchhHHHHHHHHHHHHhcCCcEEE
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSAS-SL-T--------SKWVGEGEKLVRTLFMVAISRQPCVIF 313 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~~-~l-~--------~~~~g~~~~~i~~~f~~a~~~~p~Il~ 313 (487)
+...++|.||+|+||||++++++... ...++..... .+ . ...++.....++..+..+....|.+|+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 45568999999999999999998864 2333322110 00 0 001111112345666667677899999
Q ss_pred echh
Q 011393 314 IDEI 317 (487)
Q Consensus 314 IDEi 317 (487)
+||.
T Consensus 104 lDEp 107 (261)
T 2eyu_A 104 VGEM 107 (261)
T ss_dssp ESCC
T ss_pred eCCC
Confidence 9998
No 179
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.09 E-value=0.0025 Score=61.27 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHH
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
+..-++|+||+|+|||+|+..++..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999864
No 180
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.09 E-value=0.00027 Score=64.01 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=27.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
+.-|+|.|+||+||||+++.++..++..++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 35699999999999999999999999776554
No 181
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.09 E-value=0.00028 Score=65.82 Aligned_cols=32 Identities=16% Similarity=0.400 Sum_probs=28.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
+..|+|.|+||+||||+++.++..++..++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 45799999999999999999999999877654
No 182
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.08 E-value=0.00026 Score=63.32 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=23.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFF 278 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~ 278 (487)
+..|+|.|+||+||||+++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 356899999999999999999999999877
No 183
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.08 E-value=0.00028 Score=62.79 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=24.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH-HcCCeEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVAS-ESQATFF 278 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~-~~~~~~~ 278 (487)
.-|+|.||||+||||+++.++. ..+..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4689999999999999999998 4554443
No 184
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.08 E-value=0.00027 Score=65.20 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=26.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
.|+|.||||+||||+++.++.+++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998877654
No 185
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.07 E-value=0.00031 Score=66.42 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=28.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
++..|+|.||||+||||+++.++..++..++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 456799999999999999999999998877654
No 186
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.07 E-value=0.00044 Score=61.47 Aligned_cols=31 Identities=32% Similarity=0.548 Sum_probs=27.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
+..++|.||+|+||||+++.++..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4578999999999999999999998876654
No 187
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.07 E-value=0.00046 Score=64.64 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=28.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
+..|+|.|+||+||||+++.+|..++..++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45799999999999999999999999877654
No 188
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.06 E-value=0.00035 Score=63.75 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=28.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
+..|+|.|+||+||||+++.++..++..++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 456899999999999999999999998776543
No 189
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.06 E-value=0.00033 Score=61.73 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=27.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999999887653
No 190
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.05 E-value=0.00036 Score=62.64 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=23.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.-|+|.||||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 191
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.05 E-value=0.0031 Score=58.91 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=27.9
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH----cCCeEEEEecC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE----SQATFFNVSAS 283 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~----~~~~~~~v~~~ 283 (487)
.++.-++|+|+||+|||++|..+|.. .+.+++.++..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 44567899999999999999887643 35667666653
No 192
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.05 E-value=0.00029 Score=64.92 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=26.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
.|+|.||||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 488999999999999999999999877654
No 193
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.04 E-value=0.0003 Score=63.23 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=27.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
..|+|.|+||+||||+++.++..++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5689999999999999999999999777654
No 194
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.03 E-value=0.00052 Score=62.65 Aligned_cols=32 Identities=38% Similarity=0.666 Sum_probs=27.2
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
++..++|.||+|+||||+++.++..+|..++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 35679999999999999999999999765543
No 195
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.02 E-value=0.00048 Score=64.03 Aligned_cols=38 Identities=21% Similarity=0.403 Sum_probs=30.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCccc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~l~ 286 (487)
..++-|+|.||||+||+|.|+.|+..++.+.+ +..++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdll 64 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLL 64 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHH
Confidence 34567889999999999999999999987654 444443
No 196
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.99 E-value=0.0016 Score=64.19 Aligned_cols=33 Identities=33% Similarity=0.535 Sum_probs=30.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEec
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~ 282 (487)
..|+|.||+|+|||++++.+|.+++..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 468999999999999999999999988888764
No 197
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.98 E-value=0.00044 Score=64.07 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=27.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
..|+|.|+||+||||+++.+|..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 5689999999999999999999999887654
No 198
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.97 E-value=0.012 Score=66.30 Aligned_cols=43 Identities=28% Similarity=0.335 Sum_probs=35.0
Q ss_pred cChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHH
Q 011393 219 AGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 219 ~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
+|.+..++.|.+.+... ...+-|.|+||.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999999998887411 12457899999999999999999864
No 199
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.96 E-value=0.00054 Score=63.21 Aligned_cols=29 Identities=38% Similarity=0.591 Sum_probs=25.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
.|+|.||||+||+|.|+.||+.++.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 47899999999999999999999887654
No 200
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.92 E-value=0.0005 Score=63.81 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=27.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
+..|+|.||||+||||+++.+|..++..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3569999999999999999999999976654
No 201
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.89 E-value=0.00086 Score=59.86 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=30.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~ 283 (487)
++..|.|.|++|+||||+++.++..+ |.+++.++..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 34568899999999999999999987 8888877743
No 202
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.88 E-value=0.00068 Score=64.02 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=27.0
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCeEE
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQATFF 278 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~~~~ 278 (487)
.+..++|.||+|+||||+++.++..+|...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3567999999999999999999999887554
No 203
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.87 E-value=0.0076 Score=54.82 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..+++.+|+|+|||.++-.++.+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 56999999999999998887765
No 204
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.86 E-value=0.0022 Score=66.40 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=29.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEecC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSAS 283 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~~ 283 (487)
.++.-++|.|+||+|||+++..+|... |.+++.++..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 455679999999999999999997753 5577776653
No 205
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.84 E-value=0.0036 Score=55.56 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=17.8
Q ss_pred CceeEEeCCCCCcHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKA 268 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~a 268 (487)
+.-+.|.||+|+|||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 45689999999999999994
No 206
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.83 E-value=0.00088 Score=60.22 Aligned_cols=31 Identities=23% Similarity=0.045 Sum_probs=27.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEe
Q 011393 251 GLLLFGPPGNGKTMLAKAVASES---QATFFNVS 281 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~ 281 (487)
-|.|.|+||+||||+++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999987 88888765
No 207
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.81 E-value=0.00078 Score=62.09 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=26.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
.|+|.||||+||||+++.++..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999877654
No 208
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.81 E-value=0.00045 Score=68.76 Aligned_cols=30 Identities=23% Similarity=0.536 Sum_probs=27.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
..++|.||||+|||++++++|..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999888754
No 209
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.81 E-value=0.0057 Score=55.47 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=16.0
Q ss_pred ceeEEeCCCCCcHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKA 268 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~a 268 (487)
+.+++.+|+|+|||..+-.
T Consensus 39 ~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5799999999999987443
No 210
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.80 E-value=0.00085 Score=61.21 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=29.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~ 283 (487)
.++..|.|.||+|+||||++++++..+ |...+.++..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 445678999999999999999999987 5554455543
No 211
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.80 E-value=0.015 Score=53.22 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=34.7
Q ss_pred CCcccccChHHHHHHHHHHhhc-cccChh-hhhccCCCCceeEEeCCCCCcHHHHHHHHHHH
Q 011393 213 VKWEDVAGLEKAKQALMEMVIL-PAKRRD-LFTGLRRPARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~-~~~~~~-~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
.+|+++.-.+.+.+.|.+.-.. |...+. .+... ...+.+++.+|+|+|||..+-..+-+
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA-ILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHH-HTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hCCCCEEEECCCCCchhhhhhHHHHH
Confidence 4577776667777777663221 211111 11111 11356999999999999877665544
No 212
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.79 E-value=0.00083 Score=60.90 Aligned_cols=29 Identities=21% Similarity=0.513 Sum_probs=26.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
.|+|.|++|+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 48899999999999999999999987654
No 213
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.78 E-value=0.00091 Score=62.22 Aligned_cols=30 Identities=27% Similarity=0.530 Sum_probs=26.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
.|+|.||||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 488999999999999999999998766543
No 214
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.78 E-value=0.001 Score=61.61 Aligned_cols=30 Identities=33% Similarity=0.465 Sum_probs=26.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
..|.|.||+|+||||+++.++..++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999977654
No 215
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.78 E-value=0.0021 Score=75.98 Aligned_cols=109 Identities=19% Similarity=0.234 Sum_probs=72.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCccch----------------hccchhHHHHHHHHHHHHhcCCc
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASSLTS----------------KWVGEGEKLVRTLFMVAISRQPC 310 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~l~~----------------~~~g~~~~~i~~~f~~a~~~~p~ 310 (487)
+.|++|||+|+|||+||-.++.+ .|.....+++..-.. .+....+..+..+....+...++
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~ 1511 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1511 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCC
Confidence 45999999999999999888654 477777777653221 13334577888888888999999
Q ss_pred EEEechhhhhhccCCCC------cchHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 011393 311 VIFIDEIDSIMSTRMAN------ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 360 (487)
Q Consensus 311 Il~IDEiD~l~~~~~~~------~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~tt 360 (487)
+|+||-+..|.+...-. ......+.+++.|..|.+.....+ +++|.+.
T Consensus 1512 ~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~--~~~i~~~ 1565 (1706)
T 3cmw_A 1512 VIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN--TLLIFIN 1565 (1706)
T ss_dssp EEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHT--CEEEEEE
T ss_pred EEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCC--cEEEEee
Confidence 99999999998764311 112244555666655554433333 4444444
No 216
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.76 E-value=0.001 Score=60.46 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=28.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc-CCeEEEEec
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES-QATFFNVSA 282 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~-~~~~~~v~~ 282 (487)
+.-|.|.|++|+||||+++.++..+ |.+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 4579999999999999999999998 577776653
No 217
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.75 E-value=0.0061 Score=59.33 Aligned_cols=61 Identities=21% Similarity=0.206 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEecC
Q 011393 222 EKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSAS 283 (487)
Q Consensus 222 ~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~~ 283 (487)
+.+++.+.+.+...+..... .....++..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 79 ~~~~~~~~~~l~~~l~~~~~-~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSADK-WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGGG-SCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCccc-ccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 34555555555433322111 1112345689999999999999999998753 5566666654
No 218
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.74 E-value=0.0036 Score=64.58 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=29.5
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEecC
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSAS 283 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~~ 283 (487)
-.++.-++|.|+||+|||+++..+|... +.+++.++..
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3456678999999999999999987652 5577777653
No 219
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.74 E-value=0.00059 Score=61.28 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=22.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
-|+|.|+||+||||+++.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999875
No 220
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.72 E-value=0.0015 Score=65.82 Aligned_cols=71 Identities=24% Similarity=0.388 Sum_probs=44.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEecC-ccc-h---hcc-----chhHHHHHHHHHHHHhcCCcEE
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSAS-SLT-S---KWV-----GEGEKLVRTLFMVAISRQPCVI 312 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~~-~l~-~---~~~-----g~~~~~i~~~f~~a~~~~p~Il 312 (487)
.++..++|.||+|+||||++++++... ...++.+... ++. . .++ +.....+...+..+....|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 345568999999999999999998864 2344333311 110 0 011 1111233455666666789999
Q ss_pred Eechh
Q 011393 313 FIDEI 317 (487)
Q Consensus 313 ~IDEi 317 (487)
++||+
T Consensus 214 lldE~ 218 (372)
T 2ewv_A 214 FVGEM 218 (372)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 99998
No 221
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.70 E-value=0.00079 Score=61.38 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=26.3
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
.|.|.|++|+||||+++.++. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 887776644
No 222
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.69 E-value=0.0013 Score=59.33 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=26.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCeEEEEec
Q 011393 252 LLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~ 282 (487)
|.|.|++|+||||+++.+++.+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999998 888876543
No 223
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.69 E-value=0.0013 Score=61.72 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=27.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
+..|.|.||+|+||||+++.++..++..++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3579999999999999999999999977654
No 224
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.66 E-value=0.0014 Score=62.33 Aligned_cols=33 Identities=36% Similarity=0.567 Sum_probs=29.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
+..|.|.|++|+||||+++.+|..++.+|+..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 457999999999999999999999999887643
No 225
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.59 E-value=0.0012 Score=60.21 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=27.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
..|.|+|++||||||+++.++..+|++++..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 45789999999999999999999898876643
No 226
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.58 E-value=0.003 Score=67.85 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
.+.++++||||||||+++..+...
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHH
Confidence 357999999999999998887654
No 227
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.57 E-value=0.0015 Score=59.38 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=27.6
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
.|.|.|++|+|||++++.+|..++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6889999999999999999999998877543
No 228
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.57 E-value=0.0062 Score=55.28 Aligned_cols=70 Identities=23% Similarity=0.212 Sum_probs=42.4
Q ss_pred CceeEEeCCCCCcHH-HHHHHHHHH--cCCeEEEEecC---ccchhccchh--------HHHHHHHHHHHHhcCCcEEEe
Q 011393 249 ARGLLLFGPPGNGKT-MLAKAVASE--SQATFFNVSAS---SLTSKWVGEG--------EKLVRTLFMVAISRQPCVIFI 314 (487)
Q Consensus 249 ~~~iLL~GppGtGKT-~la~aiA~~--~~~~~~~v~~~---~l~~~~~g~~--------~~~i~~~f~~a~~~~p~Il~I 314 (487)
..-.++|||.|+||| .|.+++.+. .+..++.+++. ......+... .....+++... ....+|+|
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~--~~~DvIlI 97 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIGI 97 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHH--HTCSEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhc--cCCCEEEE
Confidence 445789999999999 899998765 46777777754 1111100000 01111222222 23579999
Q ss_pred chhhhh
Q 011393 315 DEIDSI 320 (487)
Q Consensus 315 DEiD~l 320 (487)
||+.-|
T Consensus 98 DEaQFf 103 (195)
T 1w4r_A 98 DEGQFF 103 (195)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999887
No 229
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.55 E-value=0.0014 Score=59.78 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=24.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCe
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQAT 276 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~ 276 (487)
.-|+|.|+||+||||+++.++..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 468999999999999999999998763
No 230
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.54 E-value=0.0012 Score=65.37 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=30.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~ 283 (487)
++.|+|.||+|+|||+|+..+|+.++..++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 34689999999999999999999999888776653
No 231
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.53 E-value=0.0038 Score=57.32 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=29.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC----CeEEEEecCc
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQ----ATFFNVSASS 284 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~----~~~~~v~~~~ 284 (487)
++..|+|.|++|+||||+++.++..++ .+++.++...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 346789999999999999999998764 5566666433
No 232
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.53 E-value=0.0013 Score=59.65 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=26.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
+..|.|.|++|+||||+++.++.. |.+++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 457899999999999999999998 8777653
No 233
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.52 E-value=0.0014 Score=59.77 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=24.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
.|.|.||+|+||||+++.++. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 578999999999999999988 8887764
No 234
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.51 E-value=0.0024 Score=60.60 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=27.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
++..|.|.||+|+||||+++.+|..+|..++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 34578999999999999999999999987653
No 235
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.48 E-value=0.00065 Score=62.16 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=24.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQAT 276 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~ 276 (487)
+.-|+|.|+||+||||+++.++..++..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999986543
No 236
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.47 E-value=0.0017 Score=64.33 Aligned_cols=70 Identities=14% Similarity=0.278 Sum_probs=46.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC--CeEEEEecCc-cc----hh---ccchhHHHHHHHHHHHHhcCCcEEEechhh
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQ--ATFFNVSASS-LT----SK---WVGEGEKLVRTLFMVAISRQPCVIFIDEID 318 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~--~~~~~v~~~~-l~----~~---~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD 318 (487)
+..++|.||+|+|||||+++++.... ...+.+.... +. .. ++.......+..+..|....|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 45799999999999999999998753 2234444321 11 01 110023345566677777899999999984
No 237
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.46 E-value=0.0028 Score=64.80 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=27.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
.+.-|+|.|+||+||||+|+.++..++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 35678899999999999999999998876654
No 238
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.44 E-value=0.0072 Score=66.78 Aligned_cols=61 Identities=15% Similarity=0.092 Sum_probs=38.8
Q ss_pred CCCCcccccChHHHHHHHHHHhhccccCh--hhhhccCCCCceeEEeCCCCCcHHHHHHHHHHH
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVILPAKRR--DLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~~~~~~--~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
+...|+++.-.+...+.+.+.-.+|.... .+... ......+++.||+|+|||+++..++..
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~-l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL-YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH-HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH-HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34467777767777777766655553321 11111 122357999999999999977777544
No 239
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.44 E-value=0.00083 Score=61.55 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=23.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
+.-|+|.|+||+||||+++.++..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999764
No 240
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.39 E-value=0.002 Score=58.83 Aligned_cols=28 Identities=39% Similarity=0.478 Sum_probs=24.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.++.-|+|.||||+||||+++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3456799999999999999999999875
No 241
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.38 E-value=0.0026 Score=62.07 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=29.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEec
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~ 282 (487)
+.-|+|.||+|+|||+|+..+|..++..++..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 3568899999999999999999999888776654
No 242
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.35 E-value=0.022 Score=52.24 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=31.5
Q ss_pred CCcccccChHHHHHHHHHHhhc-cccChh-hhhccCCCCceeEEeCCCCCcHHHHH
Q 011393 213 VKWEDVAGLEKAKQALMEMVIL-PAKRRD-LFTGLRRPARGLLLFGPPGNGKTMLA 266 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~-~~~~~~-~~~~~~~~~~~iLL~GppGtGKT~la 266 (487)
.+|+++.-.+.+.+.|.+.-.. +...+. .+... ...+.+++.+|+|+|||..+
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPI-IEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHH-HTTCCEEEECCTTSSHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHH-hcCCCEEEECCCCCcHHHHH
Confidence 5688877667777777665321 111111 11111 12357999999999999873
No 243
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.35 E-value=0.0031 Score=58.99 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=28.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
.+..|.|.|++|+|||++++.++..+|.+++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 34578999999999999999999999987764
No 244
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.34 E-value=0.003 Score=59.78 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=30.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCe--------EEEEecCccc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQAT--------FFNVSASSLT 286 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~--------~~~v~~~~l~ 286 (487)
+..|.|.|++|+||||+++.++..++.+ +..++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 3568999999999999999999998876 3356665554
No 245
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.34 E-value=0.0099 Score=58.31 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=29.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~ 283 (487)
.++.-++|.|+||+|||+++..+|... +.+++.++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 455679999999999999999998653 4577777653
No 246
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.33 E-value=0.0031 Score=58.00 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=27.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
..|.|.|++|+|||++++.++..+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4689999999999999999999999887654
No 247
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.30 E-value=0.013 Score=59.84 Aligned_cols=93 Identities=17% Similarity=0.272 Sum_probs=53.4
Q ss_pred CCCcccccChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHcC---CeEEEEecC-ccch
Q 011393 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSAS-SLTS 287 (487)
Q Consensus 212 ~~~~~di~G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~~---~~~~~v~~~-~l~~ 287 (487)
...++++.-....+..|...+. .+...++|.||+|+||||++++++.... ..++.+.-. ++..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~-------------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~ 209 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIK-------------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 209 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHT-------------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred CCCHHHcCCCHHHHHHHHHHHH-------------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence 3567777655555555655431 2334589999999999999999998863 234333211 1100
Q ss_pred h-----ccc-hhHHHHHHHHHHHHhcCCcEEEechh
Q 011393 288 K-----WVG-EGEKLVRTLFMVAISRQPCVIFIDEI 317 (487)
Q Consensus 288 ~-----~~g-~~~~~i~~~f~~a~~~~p~Il~IDEi 317 (487)
. .+. ...-.....+..+....|.++++.|+
T Consensus 210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 0 011 11112333444455568999998874
No 248
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.26 E-value=0.0033 Score=57.93 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=26.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
.-|.|.|++|+||||+++.++. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 4689999999999999999998 88877654
No 249
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.23 E-value=0.0092 Score=62.49 Aligned_cols=38 Identities=8% Similarity=-0.039 Sum_probs=30.0
Q ss_pred CCCCceeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEecC
Q 011393 246 RRPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSAS 283 (487)
Q Consensus 246 ~~~~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~~ 283 (487)
..++.-++|.|+||+|||+++..+|... +.+++.++..
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 3455678999999999999999998763 5577777664
No 250
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.23 E-value=0.0031 Score=56.60 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCC
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQA 275 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~ 275 (487)
.++|.||+|+||||+++.++...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999987654
No 251
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.23 E-value=0.0031 Score=57.03 Aligned_cols=28 Identities=36% Similarity=0.667 Sum_probs=23.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATF 277 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~ 277 (487)
+.|+|.||+|+|||+|++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4599999999999999999988864433
No 252
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.22 E-value=0.0064 Score=62.71 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..++|+||+|+|||+|++.++..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh
Confidence 46899999999999999988765
No 253
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.21 E-value=0.002 Score=58.88 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=27.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc-CCeEEEE
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES-QATFFNV 280 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~-~~~~~~v 280 (487)
.++.-|.|.||+|+||||+++.++..+ +..++..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 334568899999999999999999987 5555443
No 254
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.20 E-value=0.024 Score=55.77 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=29.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~ 283 (487)
.++..++|.||+|+||||++..+|..+ +..++.+++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 456779999999999999999998764 5666666543
No 255
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.17 E-value=0.003 Score=57.97 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.3
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQA 275 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~ 275 (487)
++.-+.|.||+|+||||+++.++.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 4567899999999999999999998753
No 256
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.14 E-value=0.003 Score=62.59 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=28.2
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEec
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~ 282 (487)
.-|+|.||+|+|||+||+.+|..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 368999999999999999999999976666543
No 257
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.14 E-value=0.0028 Score=61.24 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=26.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
+.-|.|.|++|+||||+++.++ .+|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4568999999999999999999 678776553
No 258
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.14 E-value=0.0035 Score=56.05 Aligned_cols=26 Identities=19% Similarity=0.487 Sum_probs=22.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
+.-+.|.||+|+|||||++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45689999999999999999998764
No 259
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.12 E-value=0.0034 Score=56.23 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=27.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEec
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~ 282 (487)
++..|+|.|+||+||||+++.++..+ +..+..++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 45678999999999999999999886 344555543
No 260
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.12 E-value=0.0033 Score=60.99 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=24.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc-CCeEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASES-QATFFN 279 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~-~~~~~~ 279 (487)
.-|+|.|+||+||||+++.++... +..++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 458999999999999999999974 655543
No 261
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.11 E-value=0.0031 Score=61.64 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=27.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEec
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~ 282 (487)
+-|+|.||+|+|||+|+..+|..++..++..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 458899999999999999999998877665543
No 262
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.10 E-value=0.0036 Score=56.85 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=23.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
++.-+.|.||+|+||||+++.++...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34578999999999999999999876
No 263
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.07 E-value=0.023 Score=61.49 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHhhccccChhhhhccCCCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCc
Q 011393 220 GLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASS 284 (487)
Q Consensus 220 G~~~~k~~L~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~ 284 (487)
-.+.+++++...+.. ..-.|++||||||||+++-.+..+ .+..++.+..+.
T Consensus 190 LN~~Q~~AV~~al~~--------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQ--------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp CCHHHHHHHHHHHHC--------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCHHHHHHHHHHhcC--------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 356777777766630 124799999999999865554433 366666666544
No 264
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.05 E-value=0.019 Score=59.92 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=27.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEec
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~ 282 (487)
++..|+|.|+||+||||++..+|..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45679999999999999999998764 666666665
No 265
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.02 E-value=0.0044 Score=56.20 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=23.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
+.-+.|.||+|+|||||++.++....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999999864
No 266
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.02 E-value=0.024 Score=55.98 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346678999999999999999999864
No 267
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.99 E-value=0.029 Score=57.80 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=29.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~ 283 (487)
.++.-++|.|+||+|||+++..+|... |.+++.++..
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 455679999999999999999987653 6677777654
No 268
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.99 E-value=0.0031 Score=57.48 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=27.3
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
...+|+|.||+|+|||+||..++.... .++..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 357899999999999999999998866 555444
No 269
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.98 E-value=0.018 Score=53.14 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.4
Q ss_pred CceeEEeCCCCCcHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKA 268 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~a 268 (487)
.+.+++.+|+|+|||..+-.
T Consensus 57 ~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 35799999999999986543
No 270
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.98 E-value=0.032 Score=51.72 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=32.2
Q ss_pred CCCcccccChHHHHHHHHHHhhc-cccChhhhhccCCCCceeEEeCCCCCcHHHHHH
Q 011393 212 SVKWEDVAGLEKAKQALMEMVIL-PAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAK 267 (487)
Q Consensus 212 ~~~~~di~G~~~~k~~L~~~v~~-~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 267 (487)
..+|+++.-.+.+.+.|.+.-.. |...+...-......+.+++.+|+|+|||..+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 34688877677777777654221 111111000011123679999999999998644
No 271
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.98 E-value=0.011 Score=63.36 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=31.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~ 284 (487)
+..|+|.|+||+||||++++++..+ |.+++.++...
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 4568999999999999999999998 99998887543
No 272
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.97 E-value=0.029 Score=59.05 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=49.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh-------------------cc---------chhHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK-------------------WV---------GEGEK 295 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~-------------------~~---------g~~~~ 295 (487)
.++..++|.||+|+|||+|++.++... |..++.+...+-... .. -....
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~ 358 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLED 358 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHH
Confidence 445678999999999999999998753 444555543321000 00 01234
Q ss_pred HHHHHHHHHHhcCCcEEEechhhhhhc
Q 011393 296 LVRTLFMVAISRQPCVIFIDEIDSIMS 322 (487)
Q Consensus 296 ~i~~~f~~a~~~~p~Il~IDEiD~l~~ 322 (487)
..+.++..+....|.+|+||=+..|..
T Consensus 359 ~q~~~~a~~l~~~p~llilDp~~~Ld~ 385 (525)
T 1tf7_A 359 HLQIIKSEINDFKPARIAIDSLSALAR 385 (525)
T ss_dssp HHHHHHHHHHTTCCSEEEEECHHHHTS
T ss_pred HHHHHHHHHHhhCCCEEEEcChHHHHh
Confidence 555666677778999999997666643
No 273
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.96 E-value=0.02 Score=51.80 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.0
Q ss_pred ceeEEeCCCCCcHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKA 268 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~a 268 (487)
+.+++.+|+|+|||..+-.
T Consensus 41 ~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp CCEEEECCSSSTTHHHHHH
T ss_pred CCEEEECCCCCchHHHHHH
Confidence 6799999999999976543
No 274
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.96 E-value=0.025 Score=55.65 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=39.1
Q ss_pred CCcccccChHHHHHHHHHHhhc-cccCh-hhhhccCCCCceeEEeCCCCCcHHHHHHHHHHHc-----CCeEEEEec
Q 011393 213 VKWEDVAGLEKAKQALMEMVIL-PAKRR-DLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSA 282 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~-~~~~~-~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~~-----~~~~~~v~~ 282 (487)
.+|+++.-.+.+.+.|.+.-.. |...+ ............+++.+|+|+|||+.+-..+-+. +..++.+.+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 4577776666666666664321 11111 0111111123589999999999999876655442 444555544
No 275
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.95 E-value=0.0047 Score=56.54 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=27.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
..|.|.||+|||||++++.+|..+|.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 368899999999999999999999999884
No 276
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.89 E-value=0.029 Score=51.92 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=29.3
Q ss_pred CCcccccChHHHHHHHHHHhhc-cccChhhhhccCCCCceeEEeCCCCCcHHHHHH
Q 011393 213 VKWEDVAGLEKAKQALMEMVIL-PAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAK 267 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~-~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 267 (487)
.+|+++.-.+.+.+.|.+.-.. |...+...-......+.+++.+|+|+|||..+-
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~ 79 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFS 79 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 4566665555566666543221 111111000001123679999999999998743
No 277
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.89 E-value=0.022 Score=53.02 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=18.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVA 270 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA 270 (487)
+..+++.||+|+|||+++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4679999999999998776654
No 278
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.88 E-value=0.0043 Score=62.72 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=28.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
..-|+|.||+|+|||+|+..+|..++..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 346889999999999999999999987776554
No 279
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.88 E-value=0.079 Score=54.98 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
..+..++|.||+|+|||||++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 345678899999999999999999864
No 280
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.87 E-value=0.017 Score=54.07 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=16.1
Q ss_pred ceeEEeCCCCCcHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKA 268 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~a 268 (487)
+.+++.+|+|+|||..+-.
T Consensus 67 ~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CCEEEEECTTSCHHHHHHH
T ss_pred CCEEEECCCcCHHHHHHHH
Confidence 5799999999999987543
No 281
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.87 E-value=0.0046 Score=56.51 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=24.0
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
++..+.|.||+|+|||||++.++..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688999999999999999999877
No 282
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.85 E-value=0.00074 Score=69.43 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=6.6
Q ss_pred cEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcCCCCCCCCcEEEEEe-cCCCCCCCHHHHc--ccccEEEccCCCHH
Q 011393 310 CVIFIDEIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGA-TNKPQELDDAVLR--RLVKRIYVPLPDEN 386 (487)
Q Consensus 310 ~Il~IDEiD~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vivI~t-tn~~~~ld~al~~--Rf~~~i~i~~Pd~~ 386 (487)
.++++||++.+.. .......++++++|+..||++..... + +++ ||+++.||++|++ ||++.|++++|+..
T Consensus 109 ~~~~~De~d~~~~---~~~~~~e~rvl~~LL~~~dg~~~~~~--v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~ 181 (444)
T 1g41_A 109 KLVRQQEIAKNRA---RAEDVAEERILDALLPPAKNQWGEVE--N--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGV 181 (444)
T ss_dssp HHHHHHHHHSCC--------------------------------------------------------------------
T ss_pred hcchhhhhhhhhc---cchhhHHHHHHHHHHHHhhccccccc--c--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCc
Confidence 3455666665532 22334567889999999998865322 2 444 9999999999998 99999999999987
Q ss_pred -HHHHHH
Q 011393 387 -VRRLLL 392 (487)
Q Consensus 387 -~r~~il 392 (487)
.|.+|+
T Consensus 182 ~~~~ei~ 188 (444)
T 1g41_A 182 SMGVEIM 188 (444)
T ss_dssp -------
T ss_pred cchhhhh
Confidence 666664
No 283
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.82 E-value=0.013 Score=61.56 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=27.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~ 284 (487)
+.-|+|.|.||+||||+++.+|..+ +.....++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 3568999999999999999999987 44444455443
No 284
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.80 E-value=0.0054 Score=55.06 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=22.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
+.+.|.||+|+|||||++.++....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998764
No 285
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.77 E-value=0.0063 Score=63.87 Aligned_cols=69 Identities=23% Similarity=0.421 Sum_probs=44.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC--CeEEEEecCc-cch---hcc--------chhHHHHHHHHHHHHhcCCcEEEe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQ--ATFFNVSASS-LTS---KWV--------GEGEKLVRTLFMVAISRQPCVIFI 314 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~--~~~~~v~~~~-l~~---~~~--------g~~~~~i~~~f~~a~~~~p~Il~I 314 (487)
+..++|.||+|+||||++++++.... ...+.+.... +.. .++ +.....+..++..+....|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 45699999999999999999998763 2344444322 210 000 111123445555566678999999
Q ss_pred chh
Q 011393 315 DEI 317 (487)
Q Consensus 315 DEi 317 (487)
+|+
T Consensus 340 gEi 342 (511)
T 2oap_1 340 GEV 342 (511)
T ss_dssp SCC
T ss_pred CCc
Confidence 987
No 286
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.75 E-value=0.031 Score=54.29 Aligned_cols=70 Identities=19% Similarity=0.105 Sum_probs=44.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh-------cc-------------chhHHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK-------WV-------------GEGEKLVRTLFMVAI 305 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~-------~~-------------g~~~~~i~~~f~~a~ 305 (487)
+..+++.|++|+||||++..+|..+ +..+..+++...... |. ......+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999998764 666666665422110 00 011223345555555
Q ss_pred hcCCcEEEechhh
Q 011393 306 SRQPCVIFIDEID 318 (487)
Q Consensus 306 ~~~p~Il~IDEiD 318 (487)
.....+|+||=.-
T Consensus 178 ~~~~D~ViIDTpg 190 (297)
T 1j8m_F 178 SEKMEIIIVDTAG 190 (297)
T ss_dssp HTTCSEEEEECCC
T ss_pred hCCCCEEEEeCCC
Confidence 4566799998753
No 287
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.74 E-value=0.0053 Score=55.85 Aligned_cols=27 Identities=37% Similarity=0.582 Sum_probs=22.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
++..+.|.||+|+|||||++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 346789999999999999999998753
No 288
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.73 E-value=0.12 Score=51.36 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=32.5
Q ss_pred CCcccccChHHHHHHHHHHhhc-cccChh-hhhccCCCCceeEEeCCCCCcHHHHHHHHHHH
Q 011393 213 VKWEDVAGLEKAKQALMEMVIL-PAKRRD-LFTGLRRPARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~-~~~~~~-~~~~~~~~~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
.+|+++.-...+.+.|.+.-.. |...+. ..... ...+.+++.+|+|+|||..+-..+-.
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~lv~a~TGsGKT~~~~~~~~~ 68 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA-ILGMDVLCQAKSGMGKTAVFVLATLQ 68 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHH-TTTCCEEEECSSCSSHHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hcCCcEEEECCCCCcHHHHHHHHHHH
Confidence 3566665556666666654221 111111 11111 12367999999999999876554443
No 289
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.71 E-value=0.0094 Score=54.23 Aligned_cols=35 Identities=20% Similarity=0.101 Sum_probs=27.6
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEec
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~ 282 (487)
++.-+.|.||+|+||||+++.++..+ +..++.++.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 34568899999999999999999875 566655543
No 290
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.67 E-value=0.0089 Score=54.51 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=23.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.++-+.|.||+|+|||+|++.++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346789999999999999999998865
No 291
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.67 E-value=0.0054 Score=56.13 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=24.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.++..+.|.||+|+|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456788999999999999999999864
No 292
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.63 E-value=0.058 Score=49.35 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=16.4
Q ss_pred ceeEEeCCCCCcHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAV 269 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~ai 269 (487)
+.+++.+|+|+|||..+-..
T Consensus 42 ~~~lv~a~TGsGKT~~~~~~ 61 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLLP 61 (219)
T ss_dssp CCEEEECCSSHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHH
Confidence 57999999999999874443
No 293
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.58 E-value=0.03 Score=57.36 Aligned_cols=71 Identities=20% Similarity=0.213 Sum_probs=46.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEecCccchhcc----------------c----hhHHHHHHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSASSLTSKWV----------------G----EGEKLVRTLFM 302 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~~~l~~~~~----------------g----~~~~~i~~~f~ 302 (487)
.+++.|++.|++|+||||++-.+|..+ |..+..+++........ . .....+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345788999999999999999998653 77788777754321100 0 11222345566
Q ss_pred HHHhcCCcEEEechh
Q 011393 303 VAISRQPCVIFIDEI 317 (487)
Q Consensus 303 ~a~~~~p~Il~IDEi 317 (487)
.+......+++||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 555455679999874
No 294
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.57 E-value=0.05 Score=57.21 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAV 269 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~ai 269 (487)
.++..++|.||+|+|||||++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 34567999999999999999994
No 295
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.53 E-value=0.034 Score=50.31 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=25.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVS 281 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~ 281 (487)
..-.+++||.|+|||+.+-.++... +..++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3567899999999999888887764 66666554
No 296
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=95.50 E-value=0.13 Score=44.24 Aligned_cols=77 Identities=19% Similarity=0.186 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCC-----cchhhHHHHHHH-HHHHHHHHHHHHH
Q 011393 50 LKGYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSY-----ISTSEHEKVKSY-RQKISKWQSQVSD 123 (487)
Q Consensus 50 ~k~~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~-----~~~~~~~k~~~y-~~rae~~k~~v~~ 123 (487)
++.|+.-|.+++.+|-.+-..|+.+.|+.+|.....+++..+..-++-. .......++..- +.++|++|..+.+
T Consensus 33 l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~~~~~l~~l~~~~~~~lE~LK~~L~~ 112 (146)
T 2xze_A 33 PRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEELKAELLK 112 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTTHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999987774222211 122233333333 6677878777766
Q ss_pred HHH
Q 011393 124 RLQ 126 (487)
Q Consensus 124 rl~ 126 (487)
+-.
T Consensus 113 rY~ 115 (146)
T 2xze_A 113 RYT 115 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 297
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.48 E-value=0.019 Score=52.93 Aligned_cols=33 Identities=9% Similarity=-0.046 Sum_probs=25.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEec
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSA 282 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~ 282 (487)
.-.+++||.|+|||+.+-.++.. .+..++.+.+
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 34568999999999988888665 4667766654
No 298
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.46 E-value=0.072 Score=53.01 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=25.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVS 281 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~ 281 (487)
...|.|.|+||+|||+|+..++..+ +..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 4578999999999999999998774 44444433
No 299
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.43 E-value=0.037 Score=53.69 Aligned_cols=72 Identities=22% Similarity=0.186 Sum_probs=45.2
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecCccchh-------c--------c----c-hhHHHHHHHHHHH
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK-------W--------V----G-EGEKLVRTLFMVA 304 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~-------~--------~----g-~~~~~i~~~f~~a 304 (487)
++..+.+.|++|+||||++..+|..+ +..+..+++.-.... + . + ......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999998763 556665554321100 0 0 0 1112234555666
Q ss_pred HhcCCcEEEechhhh
Q 011393 305 ISRQPCVIFIDEIDS 319 (487)
Q Consensus 305 ~~~~p~Il~IDEiD~ 319 (487)
....+.+|+||+.-.
T Consensus 177 ~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 177 RLEARDLILVDTAGR 191 (295)
T ss_dssp HHHTCCEEEEECCCC
T ss_pred HhCCCCEEEEeCCCC
Confidence 556788999999733
No 300
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.41 E-value=0.01 Score=55.40 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=27.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v 280 (487)
..+-|.||||+||||+++.++..++.+++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 4578999999999999999999999877643
No 301
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.41 E-value=0.031 Score=53.04 Aligned_cols=19 Identities=37% Similarity=0.448 Sum_probs=16.1
Q ss_pred ceeEEeCCCCCcHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKA 268 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~a 268 (487)
+.+++.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 5799999999999987544
No 302
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.38 E-value=0.04 Score=51.82 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=30.7
Q ss_pred CCcccccChHHHHHHHHHHhhc-cccChhhhhccCCCCceeEEeCCCCCcHHHHHHH
Q 011393 213 VKWEDVAGLEKAKQALMEMVIL-PAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKA 268 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~-~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~a 268 (487)
.+|+++.-.+.+.+.|.+.-.. |...+...-......+.+++.+|+|+|||..+-.
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~ 99 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 99 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHH
Confidence 4577776566666666553321 1111110000011236799999999999986543
No 303
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.38 E-value=0.01 Score=55.29 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=27.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
..|.|.|++|||||++++.+|..+|.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 468899999999999999999999999865
No 304
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.36 E-value=0.11 Score=54.22 Aligned_cols=34 Identities=15% Similarity=0.368 Sum_probs=25.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc--------CCeEEEEecC
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASES--------QATFFNVSAS 283 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~--------~~~~~~v~~~ 283 (487)
+.+++.+|+|+|||..+-..+-+. +..++.+.+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 579999999999999877666543 5556665554
No 305
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.36 E-value=0.01 Score=52.01 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=23.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..+.|.||.|+|||||+++++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345568899999999999999999986
No 306
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.33 E-value=0.004 Score=56.91 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCC
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQA 275 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~ 275 (487)
-|.|.|++|+||||+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999998753
No 307
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.33 E-value=0.0098 Score=54.97 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.3
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..+.|.||+|+|||||++.++...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345678999999999999999999976
No 308
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.31 E-value=0.011 Score=53.96 Aligned_cols=27 Identities=22% Similarity=0.414 Sum_probs=23.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
++..+.|.||+|+|||||+++++....
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 455688999999999999999999874
No 309
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.30 E-value=0.059 Score=54.40 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=21.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEec
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSA 282 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~ 282 (487)
+.+++.+|+|+|||..+-..+-. .+...+.+.+
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~P 72 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFP 72 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 57999999999999955444333 2344444443
No 310
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.26 E-value=0.017 Score=56.34 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=23.0
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
++..+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678999999999999999999874
No 311
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.25 E-value=0.012 Score=54.56 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.++.-+.|.||+|+|||||+++++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4456789999999999999999999865
No 312
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.24 E-value=0.02 Score=55.77 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..+.|.||.|+||||+++.+|..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999874
No 313
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.23 E-value=0.021 Score=58.45 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=20.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHH
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..+-.++.|+||||||+++..++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 3456789999999999999887753
No 314
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.23 E-value=0.012 Score=54.97 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=26.2
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC--CeEEE
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQ--ATFFN 279 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~--~~~~~ 279 (487)
.+.-|.|.||||+||||+++.++..++ ..++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 345688999999999999999999986 35443
No 315
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.17 E-value=0.081 Score=53.97 Aligned_cols=36 Identities=28% Similarity=0.205 Sum_probs=28.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~ 283 (487)
++..+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 45678899999999999999998864 5566666653
No 316
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.16 E-value=0.063 Score=53.67 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=31.9
Q ss_pred CCcccccChHHHHHHHHHHhhc-cccChh-hhhccCCCCceeEEeCCCCCcHHHHHHHHHH
Q 011393 213 VKWEDVAGLEKAKQALMEMVIL-PAKRRD-LFTGLRRPARGLLLFGPPGNGKTMLAKAVAS 271 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~-~~~~~~-~~~~~~~~~~~iLL~GppGtGKT~la~aiA~ 271 (487)
.+|+++.-.+.+.+.|.+.-.. |...+. .+... ...+.+++.+|+|+|||..+-..+-
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i-~~~~~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVA-ITGRDILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHH-HHTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-hcCCCEEEECCCCcHHHHHHHHHHH
Confidence 4677776666666666553221 111110 01111 1125699999999999987655443
No 317
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.16 E-value=0.02 Score=58.66 Aligned_cols=36 Identities=28% Similarity=0.241 Sum_probs=28.8
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~ 283 (487)
++..|+|.|++|+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 34679999999999999999998865 4666666654
No 318
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.13 E-value=0.016 Score=51.50 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=25.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCeEE
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQATFF 278 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~~~~ 278 (487)
...++||.|++|+|||++|.++... |..++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 4679999999999999999999885 55444
No 319
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.10 E-value=0.059 Score=60.29 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVAS 271 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~ 271 (487)
+..++|.||.|+||||+.+.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 45689999999999999999874
No 320
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.08 E-value=0.053 Score=54.47 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=22.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.+..++|.||+|+|||+|++.+++..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHH
Confidence 35679999999999999999998753
No 321
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.06 E-value=0.013 Score=52.56 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=27.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCeEEEEecCc
Q 011393 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (487)
Q Consensus 252 iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~~ 284 (487)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 87887777644
No 322
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.04 E-value=0.03 Score=54.17 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.5
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.+.-|.|.||+|+|||||++.++..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345688999999999999999998865
No 323
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.03 E-value=0.014 Score=54.85 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=24.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQAT 276 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~ 276 (487)
+.-+.|.||.|+|||||++.++..+|..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 4468899999999999999999987743
No 324
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.00 E-value=0.13 Score=50.86 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=17.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVA 270 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA 270 (487)
++.+++.+|+|+|||..+-..+
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 4789999999999998765443
No 325
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.97 E-value=0.068 Score=49.75 Aligned_cols=18 Identities=44% Similarity=0.654 Sum_probs=15.5
Q ss_pred ceeEEeCCCCCcHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAK 267 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~ 267 (487)
+.+++.+|+|+|||..+-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 569999999999998643
No 326
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.96 E-value=0.015 Score=56.79 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=26.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCeE
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQATF 277 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~~ 277 (487)
.++..+.|.||+|+|||||++.|+......+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 4567899999999999999999999874444
No 327
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.95 E-value=0.093 Score=57.23 Aligned_cols=71 Identities=18% Similarity=0.117 Sum_probs=39.7
Q ss_pred CCCcccccChHHHHHHHHHHhh-ccccC-hhhhhccCCCCceeEEeCCCCCcHHHHHHHHHH-H---cCCeEEEEec
Q 011393 212 SVKWEDVAGLEKAKQALMEMVI-LPAKR-RDLFTGLRRPARGLLLFGPPGNGKTMLAKAVAS-E---SQATFFNVSA 282 (487)
Q Consensus 212 ~~~~~di~G~~~~k~~L~~~v~-~~~~~-~~~~~~~~~~~~~iLL~GppGtGKT~la~aiA~-~---~~~~~~~v~~ 282 (487)
+.+|+++.-.+.+.+.+.+.-. .+... .+.+.........+++.||+|+|||+.+-..+- . .+..++.+.+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P 83 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTP 83 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4567777656666666654311 11111 122222123357899999999999999844432 1 2455555544
No 328
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.95 E-value=0.046 Score=56.34 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=28.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEecC
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~~~ 283 (487)
..++|.+|+|+|||..+-.++...+..++.+-+.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 3599999999999999988888887777777665
No 329
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.88 E-value=0.028 Score=56.15 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..++|.||.|+||||+++.+|..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 345678999999999999999999874
No 330
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.88 E-value=0.11 Score=58.31 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVAS 271 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~ 271 (487)
.-++|.||.|+||||+.|.+|-
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999953
No 331
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.84 E-value=0.021 Score=57.11 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=44.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC--CeEEEEec-Cccch----h---ccc-h-------hHHHHHHHHHHHHhcCC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQ--ATFFNVSA-SSLTS----K---WVG-E-------GEKLVRTLFMVAISRQP 309 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~--~~~~~v~~-~~l~~----~---~~g-~-------~~~~i~~~f~~a~~~~p 309 (487)
++..++|.||+|+|||||+++++.... ...+.+.. .++.. . ++. . ....++..+..+....|
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~p 253 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKP 253 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCC
Confidence 456799999999999999999998753 22343332 11110 0 111 0 11234556666666788
Q ss_pred cEEEechhh
Q 011393 310 CVIFIDEID 318 (487)
Q Consensus 310 ~Il~IDEiD 318 (487)
.+++++|+.
T Consensus 254 d~~l~~e~r 262 (361)
T 2gza_A 254 TRILLAELR 262 (361)
T ss_dssp SEEEESCCC
T ss_pred CEEEEcCch
Confidence 999999874
No 332
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.82 E-value=0.12 Score=51.88 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=32.8
Q ss_pred CCcccccChHHHHHHHHHHhhc-cccChh-hhhccCCCCceeEEeCCCCCcHHHHHHHHHH
Q 011393 213 VKWEDVAGLEKAKQALMEMVIL-PAKRRD-LFTGLRRPARGLLLFGPPGNGKTMLAKAVAS 271 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~-~~~~~~-~~~~~~~~~~~iLL~GppGtGKT~la~aiA~ 271 (487)
.+|+++.-.+.+.+.|...-.. |...+. .+... ...+.+++.+|+|+|||..+-..+-
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i-~~~~~~lv~a~TGsGKT~~~~~~~~ 96 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQI-IKGRDVIAQSQSGTGKTATFSISVL 96 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHH-HTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hCCCCEEEECCCCCCchHHHHHHHH
Confidence 4577766666666666654322 111111 11111 1135799999999999987654443
No 333
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.79 E-value=0.5 Score=44.14 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=21.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
...|+|.|.||+|||+|+.++...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 457999999999999999999764
No 334
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.75 E-value=0.012 Score=57.12 Aligned_cols=36 Identities=8% Similarity=0.197 Sum_probs=25.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC---CeEEEEecCcc
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSASSL 285 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~---~~~~~v~~~~l 285 (487)
.-|.|.||+|+||||+++.++..++ ..+..++..++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 4588999999999999999999765 34455555444
No 335
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.74 E-value=0.011 Score=54.81 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=16.7
Q ss_pred CCceeEEeCCCCCcHHHHHHHHH-HHcC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVA-SESQ 274 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA-~~~~ 274 (487)
++.-+.|.||+|+|||||++.++ ....
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 34568899999999999999999 7653
No 336
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.71 E-value=0.11 Score=56.63 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=23.2
Q ss_pred CceeEEeCCCCCcHHHHHHH-HHHH---cCCeEEEEec
Q 011393 249 ARGLLLFGPPGNGKTMLAKA-VASE---SQATFFNVSA 282 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~a-iA~~---~~~~~~~v~~ 282 (487)
...+++.||+|+|||+.+-. +... .+..++.+.+
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P 76 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVP 76 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECS
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 57899999999999998743 3222 2455555544
No 337
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.71 E-value=0.066 Score=52.94 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=22.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
....+.|.||||+|||||.++++..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 44568899999999999999998764
No 338
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.70 E-value=0.12 Score=48.11 Aligned_cols=69 Identities=19% Similarity=0.120 Sum_probs=37.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecCc-------cchhccchh-----HHHHHHHHHHHHhcCCcEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASS-------LTSKWVGEG-----EKLVRTLFMVAISRQPCVIF 313 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~~-------l~~~~~g~~-----~~~i~~~f~~a~~~~p~Il~ 313 (487)
+.-.+++||.|+|||+.+-..+.. .|..++.+...- +.+.. |.. -....++++.+ ....+|+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvVi 95 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIG 95 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEE
Confidence 345678999999999766665544 355666555321 11110 000 00001233333 3457999
Q ss_pred echhhhh
Q 011393 314 IDEIDSI 320 (487)
Q Consensus 314 IDEiD~l 320 (487)
|||+.-+
T Consensus 96 IDEaQF~ 102 (234)
T 2orv_A 96 IDEGQFF 102 (234)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999877
No 339
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=94.67 E-value=0.13 Score=51.13 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=31.9
Q ss_pred CCCcccccChHHHHHHHHHHhhc-cccChh-hhhccCCCCceeEEeCCCCCcHHHHHHH
Q 011393 212 SVKWEDVAGLEKAKQALMEMVIL-PAKRRD-LFTGLRRPARGLLLFGPPGNGKTMLAKA 268 (487)
Q Consensus 212 ~~~~~di~G~~~~k~~L~~~v~~-~~~~~~-~~~~~~~~~~~iLL~GppGtGKT~la~a 268 (487)
..+|+++.-.+.+.+.|...-.. |...+. .+... ...+.+++.+|+|+|||..+-.
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i-~~~~~~lv~~~TGsGKT~~~~~ 77 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPI-IEGHDVLAQAQSGTGKTGTFSI 77 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHH-HHTCCEEECCCSSHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hCCCCEEEECCCCChHHHHHHH
Confidence 45688876666777777654321 111111 11111 1135699999999999987433
No 340
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.63 E-value=0.024 Score=52.93 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=23.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.-|.|.|++|+||||+++.++..+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999984
No 341
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.61 E-value=0.019 Score=55.47 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=27.5
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEec
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSA 282 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~ 282 (487)
.++.-++|.||||+|||+|++.+|... |.+++.++.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 445678999999999999999998763 445555443
No 342
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.038 Score=49.08 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=22.6
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
....|+|.|++|+|||+|+.++....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34679999999999999999998753
No 343
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.54 E-value=0.024 Score=60.30 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=30.0
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC----CeEEEEecCc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQ----ATFFNVSASS 284 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~----~~~~~v~~~~ 284 (487)
+..|+|.|++|+||||+|++++..++ .+++.++...
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 45689999999999999999999876 6777776433
No 344
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.50 E-value=0.022 Score=55.65 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=23.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.+.-+.|.||+|+|||||++.++..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999765
No 345
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.47 E-value=0.011 Score=56.14 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=23.9
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.+.-|+|.|++|+||||+++.++..+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346789999999999999999999983
No 346
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.46 E-value=0.18 Score=51.16 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=26.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc----CCeEEEEecC
Q 011393 251 GLLLFGPPGNGKTMLAKAVASES----QATFFNVSAS 283 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~----~~~~~~v~~~ 283 (487)
++++.+|+|+|||..+-.++... +..++.+-+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 79999999999999988886654 5666666654
No 347
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.43 E-value=0.023 Score=55.62 Aligned_cols=27 Identities=15% Similarity=0.048 Sum_probs=23.4
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++.-+.|.||+|+|||||++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 445668899999999999999999875
No 348
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.41 E-value=0.058 Score=46.38 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=19.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVAS 271 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~ 271 (487)
..|+|.|++|+|||+|++.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3689999999999999999864
No 349
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.35 E-value=0.031 Score=51.37 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=28.4
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCeEEEEe
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~v~ 281 (487)
....|-|+|..|||||++++.++. +|++++..+
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 345789999999999999999998 899887654
No 350
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.31 E-value=0.028 Score=49.84 Aligned_cols=33 Identities=18% Similarity=0.082 Sum_probs=25.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVS 281 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~ 281 (487)
...+.|.|++|+|||+++..++..+ +..+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 3468899999999999999998864 44544444
No 351
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.29 E-value=0.022 Score=53.31 Aligned_cols=28 Identities=18% Similarity=0.469 Sum_probs=24.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.++..+.|.||.|+|||||++.++....
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4556789999999999999999998653
No 352
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.23 E-value=0.03 Score=55.04 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=22.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
+.-+.|.||+|+||||+++.++..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44688999999999999999998865
No 353
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.20 E-value=0.042 Score=59.08 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=19.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..+++.||||||||+++..++..
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999988777654
No 354
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.15 E-value=0.0004 Score=72.06 Aligned_cols=81 Identities=14% Similarity=0.253 Sum_probs=45.4
Q ss_pred HHHHhcCCCCCCCCcEEEEEecCCCCCCCHHHHc--cccc--EEEccCCC--HHHHHHHHHHHhccCCCCCChhhHHHHH
Q 011393 339 FLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVK--RIYVPLPD--ENVRRLLLKHKLKGQAFSLPGGDLERLV 412 (487)
Q Consensus 339 ll~~l~~~~~~~~~~vivI~ttn~~~~ld~al~~--Rf~~--~i~i~~Pd--~~~r~~il~~~l~~~~~~l~~~~l~~La 412 (487)
++..++......++.++|++|||.++.++++++| ||+. .++++.|+ .++|.+|++.+. ..+++.++
T Consensus 176 ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~--------~~dl~~~a 247 (456)
T 2c9o_A 176 IFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT--------LHDLDVAN 247 (456)
T ss_dssp HHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE--------HHHHHHTC
T ss_pred HHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH--------HHHHHHHH
Confidence 5666653222334456667999999999999976 8987 56777774 477777765443 34789999
Q ss_pred HHcCCCCHHHHHHHHHH
Q 011393 413 RETEGYSGSDLQALCEE 429 (487)
Q Consensus 413 ~~t~G~s~~dL~~lv~~ 429 (487)
..+.| |+||.++|..
T Consensus 248 ~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 248 ARPQG--GQDILSMMGQ 262 (456)
T ss_dssp -----------------
T ss_pred HhCCC--hhHHHHHHhh
Confidence 99999 9999999954
No 355
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.15 E-value=0.025 Score=53.06 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.4
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..+.|.||.|+|||||++.++...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678999999999999999998863
No 356
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.14 E-value=0.12 Score=51.13 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.3
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
....+.|.|+||+||||++..++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999998763
No 357
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=94.10 E-value=0.18 Score=50.51 Aligned_cols=55 Identities=18% Similarity=0.123 Sum_probs=30.0
Q ss_pred CCCcccccChHHHHHHHHHHhh-ccccChhhhhccCCCCceeEEeCCCCCcHHHHH
Q 011393 212 SVKWEDVAGLEKAKQALMEMVI-LPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLA 266 (487)
Q Consensus 212 ~~~~~di~G~~~~k~~L~~~v~-~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 266 (487)
..+|+++.-.+.+.+.|...-. .|...+...-......+.+++.+|+|+|||+.+
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHH
Confidence 3457777655666666655322 111111100001112467999999999999743
No 358
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.09 E-value=0.17 Score=52.15 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=30.3
Q ss_pred CCcccccChHHHHHHHHHHhhc-cccC-hhhhhc-cCCCCceeEEeCCCCCcHHHHHH
Q 011393 213 VKWEDVAGLEKAKQALMEMVIL-PAKR-RDLFTG-LRRPARGLLLFGPPGNGKTMLAK 267 (487)
Q Consensus 213 ~~~~di~G~~~~k~~L~~~v~~-~~~~-~~~~~~-~~~~~~~iLL~GppGtGKT~la~ 267 (487)
.+|+++.-.+.+.+.|.+.-.. |... ...+.. ....++.+|+.||+|+|||..+-
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~ 149 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHH
Confidence 3566666666666666542211 0000 001111 12235789999999999998743
No 359
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.03 E-value=0.024 Score=52.68 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=23.4
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.++..+.|.||.|+|||||+++++....
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3455688999999999999999998653
No 360
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.99 E-value=0.17 Score=45.75 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|+|.|++|+|||+|++.+...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 361
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.94 E-value=0.17 Score=45.16 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
...|+|.|++|+|||+|+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999865
No 362
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.94 E-value=0.093 Score=53.64 Aligned_cols=18 Identities=33% Similarity=0.230 Sum_probs=15.9
Q ss_pred CceeEEeCCCCCcHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLA 266 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la 266 (487)
.+.+|+.||+|+|||..+
T Consensus 2 g~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CCEEEEECCTTSCTTTTH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 357999999999999975
No 363
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.93 E-value=0.029 Score=53.45 Aligned_cols=28 Identities=18% Similarity=0.417 Sum_probs=23.8
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.++..+.|.||.|+|||||+++++....
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4456788999999999999999998753
No 364
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=93.90 E-value=0.32 Score=50.67 Aligned_cols=34 Identities=21% Similarity=0.450 Sum_probs=25.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc--------CCeEEEEecC
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASES--------QATFFNVSAS 283 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~--------~~~~~~v~~~ 283 (487)
+.+++.+|+|+|||..+-..+-+. +..++.+.+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 64 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 64 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCC
Confidence 569999999999999876665443 5556666554
No 365
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.89 E-value=0.034 Score=52.22 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=22.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
..+.|.||.|+|||||+++++...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 678899999999999999999875
No 366
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.85 E-value=0.04 Score=50.15 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=22.8
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
....|+|.|++|+|||+|+.+++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34679999999999999999998864
No 367
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.85 E-value=0.041 Score=49.00 Aligned_cols=25 Identities=28% Similarity=0.215 Sum_probs=21.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
..-+.|.||+|+|||+|++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3568899999999999999998763
No 368
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=93.82 E-value=0.38 Score=37.38 Aligned_cols=48 Identities=25% Similarity=0.203 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcchh
Q 011393 55 ELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTS 102 (487)
Q Consensus 55 ~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~ 102 (487)
..|-.+=.+|=++-..|+|++||.|++++..||.++++....+....+
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa~~S 60 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 345556678888888999999999999999999999997654443333
No 369
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.81 E-value=0.29 Score=49.90 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=31.6
Q ss_pred CCCCcccccChHHHHHHHHHHhhc-cccChhhhhccCCCCceeEEeCCCCCcHHHHH
Q 011393 211 PSVKWEDVAGLEKAKQALMEMVIL-PAKRRDLFTGLRRPARGLLLFGPPGNGKTMLA 266 (487)
Q Consensus 211 ~~~~~~di~G~~~~k~~L~~~v~~-~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 266 (487)
|-.+|+++.-.+.+.+.|...-.. |...+...-......+.+++.+|+|+|||...
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHH
Confidence 345788876666666666653221 11111100000112467999999999999853
No 370
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.77 E-value=0.061 Score=49.66 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=25.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCeE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQATF 277 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~~ 277 (487)
+.-|.|.|++|+||||+++.++..++...
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 45688999999999999999999988643
No 371
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.76 E-value=0.031 Score=51.56 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
++..+.|.||.|+|||||+++++....
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 455688999999999999999988653
No 372
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.75 E-value=0.034 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..++|.||+|+|||+|++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999886
No 373
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.75 E-value=0.031 Score=52.59 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=23.3
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..+.|.||.|+|||||+++++...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445678999999999999999998764
No 374
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.74 E-value=0.039 Score=52.71 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=22.9
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
.++..+.|.||.|+|||||++.++..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44567899999999999999999985
No 375
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.73 E-value=0.028 Score=51.58 Aligned_cols=24 Identities=42% Similarity=0.546 Sum_probs=21.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
+..+.|.||.|+|||||+++++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999875
No 376
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.67 E-value=0.038 Score=47.21 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|++.|++|+|||+|++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999875
No 377
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.65 E-value=0.034 Score=52.85 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.4
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..+.|.||.|+|||||+++++...
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 455679999999999999999998764
No 378
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.64 E-value=0.035 Score=52.92 Aligned_cols=28 Identities=21% Similarity=0.509 Sum_probs=23.8
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.++..+.|.||.|+|||||+++++....
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4456788999999999999999998753
No 379
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.64 E-value=0.039 Score=52.10 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=22.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
.++..+.|.||.|+|||||++.++..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999985
No 380
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.63 E-value=0.055 Score=58.93 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=17.8
Q ss_pred CceeEEeCCCCCcHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAV 269 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~ai 269 (487)
...+++.||+|+|||+.+-..
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~ 60 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMA 60 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHHH
Confidence 468999999999999988443
No 381
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.63 E-value=0.034 Score=49.74 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc
Q 011393 251 GLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++|.||+|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 382
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.63 E-value=0.039 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.8
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
-.+|+||.|+|||+|+++|+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999988765
No 383
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.61 E-value=0.037 Score=55.22 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=23.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++.-+.|.||+|||||||.++||...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 345668899999999999999999864
No 384
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.61 E-value=0.034 Score=58.15 Aligned_cols=27 Identities=15% Similarity=0.025 Sum_probs=24.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQA 275 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~ 275 (487)
...|+|.|++|+||||+++++|..++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999875
No 385
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.60 E-value=0.16 Score=50.78 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=16.8
Q ss_pred CceeEEeCCCCCcHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAV 269 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~ai 269 (487)
.+.+++.+|+|+|||+.+-..
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHHH
Confidence 356999999999999875443
No 386
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.60 E-value=0.04 Score=51.60 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
+.-|.|.|++|+||||+++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999875
No 387
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.60 E-value=0.034 Score=52.78 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..+.|.||.|+|||||+++++...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678899999999999999998864
No 388
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.60 E-value=0.035 Score=51.70 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..+.|.||.|+|||||++.++...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678999999999999999999864
No 389
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.57 E-value=0.036 Score=53.08 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.4
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..+.|.||.|+|||||++.++...
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445678999999999999999998864
No 390
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.55 E-value=0.056 Score=50.34 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=19.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
+.-|.|.||+|+||||+++.++..+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999886
No 391
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.52 E-value=0.044 Score=50.47 Aligned_cols=32 Identities=22% Similarity=0.152 Sum_probs=25.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEE
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNV 280 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v 280 (487)
+.-|.|.|++|+||||+++.++..+ +.+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3468899999999999999999876 4555444
No 392
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.49 E-value=0.037 Score=51.98 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=23.2
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
++..+.|.||.|+|||||++.++....
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455788999999999999999998653
No 393
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.47 E-value=0.039 Score=52.36 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.3
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..+.|.||.|+|||||+++++...
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 445678899999999999999998864
No 394
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.46 E-value=0.022 Score=59.06 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=23.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
+..|+|.|.||+|||++++.++..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999999864
No 395
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.46 E-value=0.037 Score=52.21 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..+.|.||.|+|||||++.++...
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999999998864
No 396
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.43 E-value=0.038 Score=52.20 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=23.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.++..+.|.||.|+|||||++.++....
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3456788999999999999999998754
No 397
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.42 E-value=0.045 Score=54.62 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=23.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++.-+.|.||+|+|||||.+.+|.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 345678899999999999999999863
No 398
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.41 E-value=0.038 Score=53.02 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++.-+.|.||.|+|||||+++++...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345678999999999999999998764
No 399
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.41 E-value=0.046 Score=54.62 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=23.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++.-+.|.||+|+|||||.+++|.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 345568899999999999999999864
No 400
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.41 E-value=0.046 Score=54.95 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=23.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++.-+.|.||+|||||||.++||.-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 345678899999999999999999864
No 401
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.40 E-value=0.04 Score=52.59 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=23.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..+.|.||.|+|||||++.++...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445678899999999999999998753
No 402
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.37 E-value=0.071 Score=58.96 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=19.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..+++.||||||||+++..++..
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 35799999999999988777654
No 403
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.36 E-value=0.026 Score=59.74 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=29.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcC----CeEEEEecCcc
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQ----ATFFNVSASSL 285 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~----~~~~~v~~~~l 285 (487)
.+..+.|.|++|+|||||+++++..++ ..+..++...+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 345789999999999999999999874 34545555443
No 404
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.35 E-value=0.04 Score=52.62 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=23.3
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..+.|.||.|+|||||+++++...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345678899999999999999999864
No 405
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.31 E-value=0.049 Score=54.65 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=23.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++.-+.|.||+|+|||||.+++|.-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345678899999999999999999863
No 406
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.31 E-value=0.13 Score=50.96 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
...|.|.|+||+|||||..+++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 456889999999999999999875
No 407
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=93.30 E-value=0.19 Score=53.28 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
...+|+++|+|+|||.++-.++..
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCceEEEecCCCChHHHHHHHHHH
Confidence 356899999999999998777665
No 408
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.28 E-value=0.041 Score=52.68 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.9
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHc
Q 011393 251 GLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.+.|.||+|+|||||++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999864
No 409
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.26 E-value=0.047 Score=54.37 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=22.6
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
++.-+.|.||+|+|||||.+++|...
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568899999999999999999864
No 410
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.24 E-value=0.051 Score=46.72 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=20.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|++.|++|+|||+|++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 411
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.24 E-value=0.16 Score=58.20 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=24.8
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~ 283 (487)
...+|++||+|+|||+.+-..+... +..++.+.+.
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~Pt 236 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 236 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 3679999999999999876554443 5555555543
No 412
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.23 E-value=0.042 Score=52.82 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=23.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
.++..+.|.||.|+|||||++.++....
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3456788999999999999999998653
No 413
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.21 E-value=0.046 Score=49.89 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
...++|.|++|+|||+|+..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35799999999999999999998753
No 414
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.21 E-value=0.092 Score=49.93 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999765
No 415
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.18 E-value=0.054 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|+|.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999865
No 416
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.16 E-value=0.044 Score=51.90 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..+.|.||.|+|||||++.++...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678899999999999999999864
No 417
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.12 E-value=0.049 Score=47.32 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..++|.|++|+|||+|++.++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999863
No 418
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.12 E-value=0.049 Score=54.36 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=24.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQAT 276 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~ 276 (487)
...+.|.||+|+|||||++.++......
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4578999999999999999999987654
No 419
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.11 E-value=0.041 Score=48.74 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHH
Q 011393 251 GLLLFGPPGNGKTMLAKAVAS 271 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~ 271 (487)
.|+|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999976
No 420
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.09 E-value=0.099 Score=51.67 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=29.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEecC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSAS 283 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~~ 283 (487)
.++.-++|.|+||+|||+++..+|.. .+.++..++..
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 44567999999999999999999876 46777777654
No 421
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.06 E-value=0.04 Score=54.73 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=23.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++.-+.|.||+|+|||||.+.+|.-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 345678899999999999999999864
No 422
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=93.05 E-value=0.5 Score=54.14 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=17.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVA 270 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA 270 (487)
.+.+++.+|+|+|||..+-..+
T Consensus 93 g~dvlv~ApTGSGKTl~~l~~i 114 (1104)
T 4ddu_A 93 GKSFTMVAPTGVGKTTFGMMTA 114 (1104)
T ss_dssp TCCEEECCSTTCCHHHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHHHH
Confidence 3679999999999999554443
No 423
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.03 E-value=0.053 Score=54.38 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=22.6
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
++.-+.|.||+|+|||||.++||.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 45568899999999999999999864
No 424
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.03 E-value=0.074 Score=46.30 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHH
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
....|+|.|++|+|||+|++.+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999763
No 425
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.01 E-value=0.051 Score=46.54 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|++.|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 426
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.00 E-value=0.058 Score=46.37 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|++.|++|+|||+|++++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999865
No 427
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.99 E-value=0.053 Score=46.26 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.4
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 011393 251 GLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~ 272 (487)
.|++.|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 428
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.97 E-value=0.053 Score=47.00 Aligned_cols=23 Identities=43% Similarity=0.653 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|+|.|++|+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46999999999999999999754
No 429
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.96 E-value=0.05 Score=47.73 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
...|+|.|++|+|||+|.++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999875
No 430
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=92.92 E-value=0.17 Score=55.97 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
+..++|.||.|+||||+.|.++..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 456899999999999999999864
No 431
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.92 E-value=0.061 Score=46.28 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=21.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|++.|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
No 432
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.92 E-value=0.15 Score=55.92 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.4
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..++|.||.|+||||+.+.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 46889999999999999999864
No 433
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.91 E-value=0.065 Score=49.72 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.2
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQA 275 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~ 275 (487)
+.-|.|.|++|+||||+++.++..++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456888999999999999999987644
No 434
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.89 E-value=0.062 Score=46.74 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|++.|++|+|||+|++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 435
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.80 E-value=0.064 Score=46.73 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
...|++.|++|+|||+|++.+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999875
No 436
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.79 E-value=0.35 Score=56.49 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=24.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcC
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQ 274 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~ 274 (487)
+++..+.|.||.|+|||||++.+.....
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 5667899999999999999999998753
No 437
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.79 E-value=0.065 Score=46.17 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|++.|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999865
No 438
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.75 E-value=0.071 Score=45.99 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
...|++.|++|+|||+|+..+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999764
No 439
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.73 E-value=0.034 Score=49.36 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
..+.|.||+|+|||||++.++..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998875
No 440
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=92.73 E-value=0.45 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=19.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
+.+++.+|+|+|||..+-.++.+
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~~ 51 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICEH 51 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHHH
Confidence 57999999999999987776543
No 441
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.68 E-value=0.38 Score=44.18 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=22.0
Q ss_pred ceeEEeCCCCCcHHH-HHHHHHH--HcCCeEEEEec
Q 011393 250 RGLLLFGPPGNGKTM-LAKAVAS--ESQATFFNVSA 282 (487)
Q Consensus 250 ~~iLL~GppGtGKT~-la~aiA~--~~~~~~~~v~~ 282 (487)
.-.+++||-|+|||+ |.+.+-+ ..+..++.+.+
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp 64 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKP 64 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 446889999999999 5555532 23555555543
No 442
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.65 E-value=0.062 Score=46.23 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 443
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.63 E-value=0.067 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|+|.|++|+|||+|+.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 444
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.62 E-value=0.067 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|++.|++|+|||+|++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 445
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.61 E-value=0.099 Score=47.78 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
...|+|.|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999875
No 446
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.60 E-value=0.49 Score=50.04 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.4
Q ss_pred CceeEEeCCCCCcHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKA 268 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~a 268 (487)
.+.+++.+|+|+|||..+-.
T Consensus 60 ~~dvlv~apTGsGKTl~~~l 79 (579)
T 3sqw_A 60 DHDVIARAKTGTGKTFAFLI 79 (579)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEcCCCcHHHHHHHH
Confidence 46899999999999985433
No 447
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.59 E-value=0.072 Score=45.65 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.0
Q ss_pred eeEEeCCCCCcHHHHHHHHHHH
Q 011393 251 GLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~ 272 (487)
.|++.|++|+|||+|++.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999765
No 448
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.57 E-value=0.065 Score=46.23 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.1
Q ss_pred eeEEeCCCCCcHHHHHHHHHH
Q 011393 251 GLLLFGPPGNGKTMLAKAVAS 271 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~ 271 (487)
.|+|.|++|+|||+|++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999963
No 449
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.57 E-value=0.064 Score=54.13 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.8
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHH
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
.++.-+.|.||+|||||||.++|+..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 44567999999999999999999974
No 450
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.56 E-value=0.1 Score=57.76 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=17.5
Q ss_pred eeEEeCCCCCcHHHHHHHHHH
Q 011393 251 GLLLFGPPGNGKTMLAKAVAS 271 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~ 271 (487)
.+++.||||||||+++..+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 579999999999998766644
No 451
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.55 E-value=0.071 Score=46.97 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|+|.|++|+|||+|++++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999874
No 452
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.53 E-value=0.067 Score=46.56 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.9
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
...|+|.|++|+|||+|++.+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 356999999999999999999754
No 453
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.52 E-value=0.042 Score=54.75 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=23.0
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++.-+.|.||+|+|||||.+.+|...
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345678899999999999999999863
No 454
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.52 E-value=0.067 Score=46.04 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|++.|++|+|||+|++++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999863
No 455
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.52 E-value=0.28 Score=55.57 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVA 270 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA 270 (487)
+..++|.||.|+||||+.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3568999999999999999994
No 456
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.49 E-value=0.058 Score=52.16 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.4
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..+.|.||.|+|||||++.++...
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455678999999999999999998864
No 457
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.49 E-value=0.063 Score=51.14 Aligned_cols=25 Identities=32% Similarity=0.658 Sum_probs=22.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
+..+.|.||.|+|||||++.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999864
No 458
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.47 E-value=0.066 Score=47.19 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.8
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|+|.|++|+|||+|++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999874
No 459
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.42 E-value=0.13 Score=51.82 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=27.2
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHH---cCCeEEEEec
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSA 282 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~---~~~~~~~v~~ 282 (487)
...++++.||+|+|||++++.++.. .+..++.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3568999999999999999999775 3555555554
No 460
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.38 E-value=0.066 Score=49.63 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=24.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEE
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFF 278 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~ 278 (487)
.++.-|.|.||.|+||||+++.++.. +..+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 34456889999999999999999987 44333
No 461
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.30 E-value=0.087 Score=46.71 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
...|+|.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999876
No 462
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.28 E-value=0.078 Score=46.55 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|+|.|++|+|||+|+.++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 463
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.28 E-value=0.084 Score=48.57 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.6
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.-|.|.|++|+||||+++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999875
No 464
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.28 E-value=0.082 Score=45.91 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=21.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|++.|++|+|||+|++.+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
No 465
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.25 E-value=0.071 Score=46.29 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|+|.|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 466
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.25 E-value=0.098 Score=51.04 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=25.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHHcCCeEE
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASESQATFF 278 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~~~~~~~ 278 (487)
...+++|.|++|+|||++|.++... |..++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 4578999999999999999999875 55544
No 467
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.23 E-value=0.079 Score=47.04 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|+|.|++|+|||+|++.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999875
No 468
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.22 E-value=0.072 Score=47.03 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 469
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.19 E-value=0.14 Score=47.93 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=26.7
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc--CCeEEEEec
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES--QATFFNVSA 282 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~--~~~~~~v~~ 282 (487)
...+++.|.+|+||||++..+|..+ +..+..++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4568899999999999999998765 555555553
No 470
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.18 E-value=0.17 Score=47.83 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
+.|+|.|+||+|||+|..++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999765
No 471
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.17 E-value=0.083 Score=46.10 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|++.|++|+|||+|++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
No 472
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.15 E-value=0.081 Score=46.75 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|++.|++|+|||+|+..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
No 473
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.14 E-value=0.076 Score=46.20 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|+|.|++|+|||+|++++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999875
No 474
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.14 E-value=0.082 Score=46.25 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=21.0
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|+|.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 56999999999999999999875
No 475
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.13 E-value=0.13 Score=51.11 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=24.5
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQAT 276 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~ 276 (487)
+.-+.|.||+|+|||||++.++......
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4568999999999999999999987654
No 476
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.10 E-value=0.078 Score=45.76 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.-.+|+||.|+|||++..|+.--+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999997654
No 477
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.09 E-value=0.7 Score=50.83 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=25.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHc---CCeEEEEecC
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~ 283 (487)
+..+|+.||.|+|||..+-..+-.. +...+.+.+.
T Consensus 389 ~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPt 426 (780)
T 1gm5_A 389 PMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPT 426 (780)
T ss_dssp CCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 4679999999999999876654432 5555555554
No 478
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.07 E-value=0.073 Score=47.22 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
...|+|.|++|+|||+|++.+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999864
No 479
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.03 E-value=0.078 Score=46.13 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.3
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|+|.|++|+|||+|++++...
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999653
No 480
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.98 E-value=0.08 Score=46.50 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|+|.|++|+|||+|++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999865
No 481
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.96 E-value=0.092 Score=46.02 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.4
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
...|+|.|++|+|||+|++.+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999865
No 482
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=91.94 E-value=0.095 Score=51.06 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=25.6
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHcCCeEEE
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~~~~~~~ 279 (487)
..+.++||.|++|+|||++|-.+.. .|..++.
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~-~G~~lv~ 176 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLIN-KNHLFVG 176 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT-TTCEEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe
Confidence 3467999999999999999988865 4665554
No 483
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.94 E-value=0.087 Score=46.94 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.1
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
...|++.|++|+|||+|++.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999874
No 484
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.90 E-value=0.098 Score=52.23 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.1
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++.-+.|.||.|+|||||+++++.-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 445678899999999999999999853
No 485
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=91.87 E-value=0.74 Score=39.36 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHcCCC-C--C-CCcchh-hHHHHHHHHHHHHHHHHHHHH
Q 011393 49 KLKGYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTP-V--P-SYISTS-EHEKVKSYRQKISKWQSQVSD 123 (487)
Q Consensus 49 ~~k~~~~~A~~~i~~Av~~d~~g~~~~Al~~Y~~~i~~l~~~~~~~-~--~-~~~~~~-~~~k~~~y~~rae~~k~~v~~ 123 (487)
.++.|+.-|..++.+|-.+...|+.+.|+.+|-.-+.++....+.+ . . ...+.. ...++..-++++|+++..+.+
T Consensus 34 pl~~y~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kIpkHpdyk~~~~~~k~~l~k~~~~~vl~~lE~LK~~L~~ 113 (144)
T 2a9u_A 34 STKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKL 113 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSHHHHHTHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999988885333322 0 0 001111 234455668888999988888
Q ss_pred HHHH
Q 011393 124 RLQA 127 (487)
Q Consensus 124 rl~~ 127 (487)
+...
T Consensus 114 rYe~ 117 (144)
T 2a9u_A 114 RYEE 117 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 486
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.87 E-value=0.06 Score=52.51 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=23.7
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..+.|.||.|+|||||++.++...
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 456789999999999999999998864
No 487
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.86 E-value=0.093 Score=45.93 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|++.|++|+|||+|++.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 488
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.85 E-value=0.091 Score=46.59 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
...|+|.|++|+|||+|+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999754
No 489
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.85 E-value=0.086 Score=54.42 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.2
Q ss_pred CCCceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 247 ~~~~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
.++..+.|.||.|+|||||++.++...
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 345679999999999999999998863
No 490
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.82 E-value=0.099 Score=45.53 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
...|+|.|++|+|||+|+..+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999999865
No 491
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.80 E-value=0.089 Score=46.52 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHHc
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASES 273 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~~ 273 (487)
..|+|.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 469999999999999999887654
No 492
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.75 E-value=0.096 Score=46.34 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.9
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|+|.|++|+|||+|+..+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
No 493
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.75 E-value=0.098 Score=46.38 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.5
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|+|.|++|+|||+|++.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999888765
No 494
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.72 E-value=0.099 Score=46.38 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.7
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|+|.|++|+|||+|++.+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46999999999999999999864
No 495
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.72 E-value=0.096 Score=49.18 Aligned_cols=27 Identities=26% Similarity=0.213 Sum_probs=24.2
Q ss_pred eeEEeCCCCCcHHHHHHHHHHHcCCeE
Q 011393 251 GLLLFGPPGNGKTMLAKAVASESQATF 277 (487)
Q Consensus 251 ~iLL~GppGtGKT~la~aiA~~~~~~~ 277 (487)
-|.|+|++|+|||++++.+....|.++
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 478999999999999999999888765
No 496
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.71 E-value=0.14 Score=52.39 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=24.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHHcCCe
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASESQAT 276 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~~~~~ 276 (487)
+..+.|.||+|+|||+|++.++......
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 4568999999999999999999987543
No 497
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.71 E-value=0.12 Score=45.11 Aligned_cols=24 Identities=25% Similarity=0.164 Sum_probs=21.3
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
...|++.|++|+|||+|++.+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999864
No 498
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.69 E-value=0.11 Score=46.29 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.6
Q ss_pred CceeEEeCCCCCcHHHHHHHHHHH
Q 011393 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 249 ~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
...|+|.|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999875
No 499
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.65 E-value=0.1 Score=46.29 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=21.1
Q ss_pred ceeEEeCCCCCcHHHHHHHHHHH
Q 011393 250 RGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 250 ~~iLL~GppGtGKT~la~aiA~~ 272 (487)
..|+|.|++|+|||+|++++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
No 500
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.62 E-value=0.054 Score=48.84 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=21.1
Q ss_pred CCceeEEeCCCCCcHHHHHHHHHHH
Q 011393 248 PARGLLLFGPPGNGKTMLAKAVASE 272 (487)
Q Consensus 248 ~~~~iLL~GppGtGKT~la~aiA~~ 272 (487)
+...+.|.|++|+|||+|+++++..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3456999999999999999998643
Done!