BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011394
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 511 bits (1317), Expect = e-145, Method: Compositional matrix adjust.
Identities = 260/473 (54%), Positives = 336/473 (71%), Gaps = 9/473 (1%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ GLAVMG+NLALNI KG+ ++VYNR K DE ++ AK + + G E FV
Sbjct: 6 QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKN---IVGTYSIEEFV 62
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
N+++KPR I+++VKAGAP D TI+ L ++EKGD +IDGGN ++++T+RR K +AELG+
Sbjct: 63 NALEKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELGIH 122
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++G GVSGGEEGA GPS+MPGG EA++ + I +AA+V D PC TY+ G+G++
Sbjct: 123 FIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKV-DGEPCTTYIGPDGAGHY 181
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAEAY +LK V + EL VF +WNKGEL S+LIEITA
Sbjct: 182 VKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVFADWNKGELNSYLIEITADIFTK 241
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAA 308
LVD +LDK G KGTGKWT Q A DL V P I S+ ARFLS +K+ERV+A+
Sbjct: 242 IDEETGKPLVDVILDKAGQKGTGKWTSQNALDLGVPLPIITESVFARFLSAMKDERVKAS 301
Query: 309 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 368
KV G V+ + D+ I+ VR+ALY SKICSYAQG ++A S E W+L+ G++
Sbjct: 302 KVL--AGPAVKPFEG-DRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNWNLRYGDI 358
Query: 369 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDR-QSAWRRVVCLAINSG 427
A I++GGCIIRA FL +IK+AYDR+ L+NLL+D F K+IV+R Q A R +V A G
Sbjct: 359 AMIFRGGCIIRAQFLQKIKEAYDRDPALSNLLLDSYF-KDIVERYQDALREIVATAAMRG 417
Query: 428 ISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 480
I PG +S+LAY+DSYR LPANL+QAQRDYFGAHTYER+D EG FHTEW K
Sbjct: 418 IPVPGSASALAYYDSYRTAVLPANLIQAQRDYFGAHTYERVDKEGIFHTEWLK 470
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 511 bits (1316), Expect = e-145, Method: Compositional matrix adjust.
Identities = 260/473 (54%), Positives = 336/473 (71%), Gaps = 9/473 (1%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ GLAVMG+NLALNI KG+ ++VYNR K DE ++ AK + + G E FV
Sbjct: 7 QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKN---IVGTYSIEEFV 63
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
N+++KPR I+++VKAGAP D TI+ L ++EKGD +IDGGN ++++T+RR K +AELG+
Sbjct: 64 NALEKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELGIH 123
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++G GVSGGEEGA GPS+MPGG EA++ + I +AA+V D PC TY+ G+G++
Sbjct: 124 FIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKV-DGEPCTTYIGPDGAGHY 182
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAEAY +LK V + EL VF +WNKGEL S+LIEITA
Sbjct: 183 VKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVFADWNKGELNSYLIEITADIFTK 242
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAA 308
LVD +LDK G KGTGKWT Q A DL V P I S+ ARFLS +K+ERV+A+
Sbjct: 243 IDEETGKPLVDVILDKAGQKGTGKWTSQNALDLGVPLPIITESVFARFLSAMKDERVKAS 302
Query: 309 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 368
KV G V+ + D+ I+ VR+ALY SKICSYAQG ++A S E W+L+ G++
Sbjct: 303 KVL--AGPAVKPFEG-DRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNWNLRYGDI 359
Query: 369 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDR-QSAWRRVVCLAINSG 427
A I++GGCIIRA FL +IK+AYDR+ L+NLL+D F K+IV+R Q A R +V A G
Sbjct: 360 AMIFRGGCIIRAQFLQKIKEAYDRDPALSNLLLDSYF-KDIVERYQDALREIVATAAMRG 418
Query: 428 ISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 480
I PG +S+LAY+DSYR LPANL+QAQRDYFGAHTYER+D EG FHTEW K
Sbjct: 419 IPVPGSASALAYYDSYRTAVLPANLIQAQRDYFGAHTYERVDKEGIFHTEWLK 471
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 480 bits (1236), Expect = e-136, Method: Compositional matrix adjust.
Identities = 241/471 (51%), Positives = 316/471 (67%), Gaps = 8/471 (1%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ G+AVMG+NLALNI +G+ +S++NR+ K +E + + +P + ++ FV
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKE---FV 73
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
S++ PR I+++VKAGA D I +L Y++KGD IIDGGN ++++T RR + ++ G
Sbjct: 74 ESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++G GVSGGEEGA GPS+MPGG EAY+ + IL K+AA D PCVTY+ G+G++
Sbjct: 134 FIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY 193
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAEAY +LK LTNEEL FTEWN GEL S+LI+IT
Sbjct: 194 VKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDIT-KDIFT 252
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAA 308
YLVD +LD+ KGTGKWT Q A DL I S+ AR++S LK++RV A+
Sbjct: 253 KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS 312
Query: 309 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 368
KV G Q+ A DK + I+ VR+ALY KI SYAQG + +RA S E WDL GE+
Sbjct: 313 KVLS----GPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEI 368
Query: 369 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 428
A+I++ GCIIRA FL +I AY N +ANLL+ P F + D Q A R VV A+ GI
Sbjct: 369 AKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQIGI 428
Query: 429 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479
P S+++AY+DSYR LPANL+QAQRDYFGAHTY+RID EG FHTEW
Sbjct: 429 PVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL 479
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 478 bits (1229), Expect = e-135, Method: Compositional matrix adjust.
Identities = 240/471 (50%), Positives = 316/471 (67%), Gaps = 8/471 (1%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ G+AVMG+NLALNI +G+ +S++NR+ K +E + + +P + ++ FV
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKE---FV 73
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
S++ PR I+++VKAGA D I +L Y++KGD IIDGGN ++++T RR + ++ G
Sbjct: 74 ESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++G GVSGGEEGA GPS+MPGG EAY+ + IL K+AA D PCVTY+ G+G++
Sbjct: 134 FIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY 193
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAEAY +LK LTNEEL FTEWN GEL S+LI+IT
Sbjct: 194 VKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDIT-KDIFT 252
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAA 308
YLVD +LD+ KGTGKWT Q A DL I S+ AR++S LK++RV A+
Sbjct: 253 KKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS 312
Query: 309 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 368
KV G Q+ A DK + I+ VR+ALY KI SYAQG + +RA S E WDL GE+
Sbjct: 313 KVLS----GPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEI 368
Query: 369 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 428
A+I++ GCIIRA FL +I A N +ANLL+ P F + D Q A R VV A+ +GI
Sbjct: 369 AKIFRAGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGI 428
Query: 429 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479
P S+++AY+DSYR LPANL+QAQRDYFGAHTY+RID EG FHTEW
Sbjct: 429 PVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL 479
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 476 bits (1225), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/472 (50%), Positives = 319/472 (67%), Gaps = 8/472 (1%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG+ G+AVMG+NLALNI +G+ +SV+NR+ K +E + + +P + ++ FV
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYTVQE---FV 73
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
S++ PR I+++VKAGA D I +L Y++KGD IIDGGN ++++T RR + ++ G
Sbjct: 74 ESLETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133
Query: 129 YLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNF 188
++G GVSGGEEG GPS+MPGG EAY+ + IL ++AA D PCVTY+ G+G++
Sbjct: 134 FIGTGVSGGEEGTLKGPSIMPGGQKEAYELVAPILKQIAAVAEDGEPCVTYIGADGAGHY 193
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAEAY +LK L+NEEL FTEWN+GEL S+LI+IT
Sbjct: 194 VKMVHNGIEYGDMQLIAEAYALLKGGLALSNEELAQTFTEWNEGELSSYLIDIT-KDIFT 252
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAA 308
YLVD +LD+ KGTGKWT Q + DL I S+ AR++S LK++RV A+
Sbjct: 253 KKDEEGKYLVDVILDEAANKGTGKWTSQSSLDLGEPLSLITESVFARYISSLKDQRVAAS 312
Query: 309 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 368
KV G Q+ A DK + I+ VR+ALY KI SYAQG + +RA S E WDL GE+
Sbjct: 313 KVLS----GPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASDEYNWDLNYGEI 368
Query: 369 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 428
A+I++ GCIIRA FL +I AY +NA +ANLL+ P F + D Q A R VV A+ +GI
Sbjct: 369 AKIFRAGCIIRAQFLQKITDAYAQNAGIANLLLAPYFKQIADDYQQALRDVVAYAVQNGI 428
Query: 429 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFK 480
P S+++AY+DSYR LPANL+QAQRDYFGAHTY+R D EG FHTEW +
Sbjct: 429 PVPTFSAAIAYYDSYRSAVLPANLIQAQRDYFGAHTYKRTDKEGIFHTEWLE 480
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 474 bits (1219), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/471 (49%), Positives = 320/471 (67%), Gaps = 8/471 (1%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
G+ G+AVMG+NLALN+ +G+ +++YNRTTSK +E K+ D L + E FV
Sbjct: 8 FGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF---KEHQDKNLVFTKTLEEFVG 64
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
S++KPR I+++V+AGA D TIK+L ++ GD +IDGGN + +T RR +A+ G+ +
Sbjct: 65 SLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINF 124
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSG-PCVTYVSKGGSGNF 188
+G GVSGGE+GA GPS+MPGG EAY + I ++AA+ P G PCV Y+ G+G++
Sbjct: 125 IGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 184
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAE+YD+LK + L+N E+Q +F EWN+GEL S+LIEIT
Sbjct: 185 VKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKR 244
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAA 308
Y+VDK+LDK G KGTGKWT + A DL V P I S+ AR++S K+ERV+A+
Sbjct: 245 KDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKAS 304
Query: 309 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 368
KV G + + DK+++I+ +R+ALY SKI SYAQG +R S E WDL G +
Sbjct: 305 KVLS----GPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTI 360
Query: 369 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 428
A+IW+ GCIIRA FL I A+D++++L NLL+D F Q A R VV LA+ +G
Sbjct: 361 AQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQAGT 420
Query: 429 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479
P +S+++Y+DSYR E LPANL+QAQRDYFGAHTYER D G FH +W+
Sbjct: 421 PIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWY 471
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 473 bits (1218), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/471 (49%), Positives = 320/471 (67%), Gaps = 8/471 (1%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
G+ G+AVMG+NLALN+ +G+ +++YNRTTSK +E K+ D L + E FV
Sbjct: 6 FGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF---KEHQDKNLVFTKTLEEFVG 62
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
S++KPR I+++V+AGA D TIK+L ++ GD +IDGGN + +T RR +A+ G+ +
Sbjct: 63 SLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINF 122
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSG-PCVTYVSKGGSGNF 188
+G GVSGGE+GA GPS+MPGG EAY + I ++AA+ P G PCV Y+ G+G++
Sbjct: 123 IGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 182
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAE+YD+LK + L+N E+Q +F EWN+GEL S+LIEIT
Sbjct: 183 VKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKR 242
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAA 308
Y+VDK+LDK G KGTGKWT + A DL V P I S+ AR++S K+ERV+A+
Sbjct: 243 KDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKAS 302
Query: 309 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 368
KV G + + DK+++I+ +R+ALY SKI SYAQG +R S E WDL G +
Sbjct: 303 KVLS----GPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTI 358
Query: 369 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 428
A+IW+ GCIIRA FL I A+D++++L NLL+D F Q A R VV LA+ +G
Sbjct: 359 AQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQAGT 418
Query: 429 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479
P +S+++Y+DSYR E LPANL+QAQRDYFGAHTYER D G FH +W+
Sbjct: 419 PIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWY 469
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 473 bits (1218), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/471 (49%), Positives = 320/471 (67%), Gaps = 8/471 (1%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
G+ G+AVMG+NLALN+ +G+ +++YNRTTSK +E K+ D L + E FV
Sbjct: 7 FGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF---KEHQDKNLVFTKTLEEFVG 63
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
S++KPR I+++V+AGA D TIK+L ++ GD +IDGGN + +T RR +A+ G+ +
Sbjct: 64 SLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINF 123
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSG-PCVTYVSKGGSGNF 188
+G GVSGGE+GA GPS+MPGG EAY + I ++AA+ P G PCV Y+ G+G++
Sbjct: 124 IGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 183
Query: 189 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXX 248
VKM+HNGIEYGDMQLIAE+YD+LK + L+N E+Q +F EWN+GEL S+LIEIT
Sbjct: 184 VKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKR 243
Query: 249 XXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAA 308
Y+VDK+LDK G KGTGKWT + A DL V P I S+ AR++S K+ERV+A+
Sbjct: 244 KDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKAS 303
Query: 309 KVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 368
KV G + + DK+++I+ +R+ALY SKI SYAQG +R S E WDL G +
Sbjct: 304 KVLS----GPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTI 359
Query: 369 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 428
A+IW+ GCIIRA FL I A+D++++L NLL+D F Q A R VV LA+ +G
Sbjct: 360 AQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQAGT 419
Query: 429 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479
P +S+++Y+DSYR E LPANL+QAQRDYFGAHTYER D G FH +W+
Sbjct: 420 PIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWY 470
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 428 bits (1100), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/477 (47%), Positives = 308/477 (64%), Gaps = 14/477 (2%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
GL GLAVMGQNL LN A+ GF + YNRT SKVD + K + G E F++
Sbjct: 13 FGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSI--IGATSIEDFIS 70
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
+++PR +++LVKAGAPVD I + +EKGD IIDGGN + ++ RR + + + G+L+
Sbjct: 71 KLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILF 130
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
+G GVSGGEEGAR+GPSLMPGGS EA+ +I++I ++A+ D PC +V G+G++V
Sbjct: 131 VGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQSISAK-SDGEPCCEWVGPAGAGHYV 189
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXX 249
KM+HNGIEYGDMQLI EAYD++K +G T++E+ +VF +WN G L SFL+EIT
Sbjct: 190 KMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDILKFD 249
Query: 250 XXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAK 309
LV+K++D G KGTGKWT A DL + I ++ AR LS LK ER+ A+K
Sbjct: 250 DVDGKP-LVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKNERIRASK 308
Query: 310 VFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA 369
V G V + D+++ +DD+ QALYASKI SYAQG LIR + GW L +A
Sbjct: 309 VLP--GPEVPKDAVKDREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIA 366
Query: 370 RIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGIS 429
+W+GGCIIR+VFL +I KAY DL NLL + FA + QS WR+ + LA GI
Sbjct: 367 LMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKFFADAVTKAQSGWRKSIALATTYGIP 426
Query: 430 TPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTY--------ERIDMEGSFHTEW 478
TP S++L+++D YR ERLPANL+QAQRDYFGAHT+ + + ++ H W
Sbjct: 427 TPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDKDIHINW 483
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/471 (48%), Positives = 307/471 (65%), Gaps = 9/471 (1%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
I L GLAVMGQNL LN+ + GF + +NRT SKVD+ + A + + G E V+
Sbjct: 5 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVLGAHSLEEMVS 62
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
++KPR II+LVKAG VD I+ L ++ GD IIDGGN Y +T RR + + + G+L+
Sbjct: 63 KLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILF 122
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
+G GVSGGE+GAR+GPSLMPGG+ EA+ +I+ I +AA+V PC +V G+G+FV
Sbjct: 123 VGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFV 182
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXX 249
KM+HNGIEYGDMQLI EAY ++K V L ++E+ F EWNK EL SFLIEITA
Sbjct: 183 KMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITA-SILKF 241
Query: 250 XXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAK 309
+L+ K+ D G KGTGKWT A + V I ++ AR LS LK+ER++A+K
Sbjct: 242 QDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASK 301
Query: 310 VFKSGGFGVQSNQ-AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 368
K G Q+ DK+ ++D+R+ALYASKI SYAQG L+R + E GW L G +
Sbjct: 302 KLK----GPQNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGI 357
Query: 369 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 428
A +W+GGCIIR+VFL +IK A+DRN L NLL+D F + + Q +WRR + + +GI
Sbjct: 358 ALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGVQAGI 417
Query: 429 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSF-HTEW 478
P +++L+++D YR LPANL+QAQRDYFGAHTYE + G F HT W
Sbjct: 418 PMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNW 468
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 421 bits (1083), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/471 (48%), Positives = 309/471 (65%), Gaps = 9/471 (1%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
I L GLAVMGQNL LN+ + GF + +NRT SKVD+ + A + + G + + V+
Sbjct: 7 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVVGAQSLKEMVS 64
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
++KPR II+LVKAG VD+ I+ L ++ GD IIDGGN Y +T RR + + G+L+
Sbjct: 65 KLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILF 124
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
+G GVSGGEEGAR+GPSLMPGG+ EA+ +I+ I +AA+V PC +V G+G+FV
Sbjct: 125 VGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFV 184
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXX 249
KM+HNGIEYGDMQLI EAY ++K V + +E+ F +WNK EL SFLIEITA
Sbjct: 185 KMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITA-NILKF 243
Query: 250 XXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAK 309
+L+ K+ D G KGTGKWT A + V I ++ AR LS LK+ER++A+K
Sbjct: 244 QDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASK 303
Query: 310 VFKSGGFGVQSNQAV-DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 368
K G Q Q DK+ ++D+R+ALYASKI SYAQG L+R + E GW L G +
Sbjct: 304 KLK----GPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGI 359
Query: 369 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 428
A +W+GGCIIR+VFL +IK A+DRN +L NLL+D F + + Q +WRR V + +GI
Sbjct: 360 ALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGI 419
Query: 429 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSF-HTEW 478
P +++L+++D YR E LPA+L+QAQRDYFGAHTYE + G F HT W
Sbjct: 420 PMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNW 470
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/471 (48%), Positives = 309/471 (65%), Gaps = 9/471 (1%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN 69
I L GLAVMGQNL LN+ + GF + +NRT SKVD+ + A + + G + + V+
Sbjct: 28 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVVGAQSLKEMVS 85
Query: 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129
++KPR II+LVKAG VD+ I+ L ++ GD IIDGGN Y +T RR + + G+L+
Sbjct: 86 KLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILF 145
Query: 130 LGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFV 189
+G GVSGGEEGAR+GPSLMPGG+ EA+ +I+ I +AA+V PC +V G+G+FV
Sbjct: 146 VGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFV 205
Query: 190 KMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXX 249
KM+HNGIEYGDMQLI EAY ++K V + +E+ F +WNK EL SFLIEITA
Sbjct: 206 KMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITA-NILKF 264
Query: 250 XXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAK 309
+L+ K+ D G KGTGKWT A + V I ++ AR LS LK+ER++A+K
Sbjct: 265 QDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASK 324
Query: 310 VFKSGGFGVQSNQAV-DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 368
K G Q Q DK+ ++D+R+ALYASKI SYAQG L+R + E GW L G +
Sbjct: 325 KLK----GPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGI 380
Query: 369 ARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGI 428
A +W+GGCIIR+VFL +IK A+DRN +L NLL+D F + + Q +WRR V + +GI
Sbjct: 381 ALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGI 440
Query: 429 STPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSF-HTEW 478
P +++L+++D YR E LPA+L+QAQRDYFGAHTYE + G F HT W
Sbjct: 441 PMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNW 491
>pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
pdb|1PGJ|B Chain B, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
Length = 478
Score = 274 bits (701), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 167/471 (35%), Positives = 259/471 (54%), Gaps = 24/471 (5%)
Query: 21 NLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRV 76
NLALNIAEKGF ++V+NRT SK +E + K P G F E+F S++KPR
Sbjct: 15 NLALNIAEKGFKVAVFNRTYSKSEEFM---KANASAPFAGNLKAFETMEAFAASLKKPRK 71
Query: 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136
++LV+AGA D TI+ L EKGD ++D GN +++ RR + + GL +LGMG+SG
Sbjct: 72 ALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG 131
Query: 137 GEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGI 196
GEEGAR GP+ PGG+ ++ I I+ AA+ D PCVT GG+G+ VKM HN
Sbjct: 132 GEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSG 191
Query: 197 EYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEW-NKGELLSFLIEITAXXXXXXXXXXXX 255
EY +Q+ E +D+L+++G L N+E+ V +W +K L S++++I+
Sbjct: 192 EYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDIS-IAAARAKDKDGS 249
Query: 256 YLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEER----VEAAKVF 311
YL + V+D+ G KGTG W+ Q+A ++ V AP++ ++ +R + K ER A +
Sbjct: 250 YLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGIT 309
Query: 312 KSGGFGV--QSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA 369
+S G+ + +S + ++L D V A+ I YAQ +R + L L
Sbjct: 310 QSPGYTLKNKSPSGPEIKQLYDSVCIAI----ISCYAQMFQCLREMDKVHNFGLNLPATI 365
Query: 370 RIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINS-GI 428
++ GCI++ L + +A+++N +++NL+ F EI +R +V L + +
Sbjct: 366 ATFRAGCILQGYLLKPMTEAFEKNPNISNLMC--AFQTEIRAGLQNYRDMVALITSKLEV 423
Query: 429 STPGMSSSLAYFDSYRRERLP-ANLVQAQRDYFGAHTYERIDMEGSFHTEW 478
S P +S+SL Y + L LV QRD FG H YER+D +G +W
Sbjct: 424 SIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQW 474
>pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
pdb|4E21|B Chain B, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
Length = 358
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 142/307 (46%), Gaps = 47/307 (15%)
Query: 46 TVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCII 105
V+ ++EG + G R E F + KPRV+ + V A A VD ++ + + D +I
Sbjct: 57 AVQALEREG---IAGARSIEEFCAKLVKPRVVWLXVPA-AVVDSXLQRXTPLLAANDIVI 112
Query: 106 DGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDIL-- 163
DGGN Y++ RR G+ Y+ +G SGG G G L GG +A + ++ +
Sbjct: 113 DGGNSHYQDDIRRADQXRAQGITYVDVGTSGGIFGLERGYCLXIGGEKQAVERLDPVFRT 172
Query: 164 ----LKVAAQVP-----DSGPCVTYVSKG--GSGNFVKMIHNGIEYGDMQLIAEAYDVLK 212
+ A + P + + Y+ G G+G+FVK +HNGIEYG AE ++L
Sbjct: 173 LAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKXVHNGIEYGLXAAYAEGLNILH 232
Query: 213 --SVGK-----------LTNE-------ELQNVFTEWNKGELL-SFLIEITAXXXXXXXX 251
+ GK L N +L ++ W +G ++ S+L++++A
Sbjct: 233 HANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALLDSPD 292
Query: 252 XXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEE---RVEAA 308
+ + + G G+WTV A D V A ++S+L RF S +++ R+ +A
Sbjct: 293 ------LQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSALYERFSSRGEDDFANRLLSA 346
Query: 309 KVFKSGG 315
++ GG
Sbjct: 347 XRYEFGG 353
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 26/140 (18%)
Query: 343 CSYAQGMNLIR-AKSIEKG-----------------WDLKLGELARIWKGGCIIRAVFLD 384
+YA+G+N++ A + ++G +DL L ++ +W+ G +I + LD
Sbjct: 222 AAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLD 281
Query: 385 RIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYR 444
A + DL EF + D R V AI+ G+ +SS+L S R
Sbjct: 282 LSATALLDSPDLQ------EFQGRVSDSGEG-RWTVAAAIDEGVPAHVLSSALYERFSSR 334
Query: 445 RERLPAN-LVQAQRDYFGAH 463
E AN L+ A R FG H
Sbjct: 335 GEDDFANRLLSAXRYEFGGH 354
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 4 GKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLP 57
G + +G GL +MG+ +++N+ + GF ++V+NRT SK DE VE + P
Sbjct: 18 GSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESP 71
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 33/240 (13%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+IG GL +MG + N+ + G ++V+NRT K D ++ + G P +
Sbjct: 32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91
Query: 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128
+ P+ LV + V + I+ G C +D + + + G
Sbjct: 92 ACVSDPKAAKDLVLGPSGVLQGIR-------PGKCYVDMSTVDADTVTELAQVIVSRGGR 144
Query: 129 YLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSK----- 182
+L VSG ++ + G ++ G Y+ D C + K
Sbjct: 145 FLEAPVSGNQQLSNDGMLVILAAGDRGLYE--------------DCSSCFQAMGKTSFFL 190
Query: 183 GGSGNFVKM--IHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240
G GN KM I N ++ M IAE ++ ++T + Q + N+G+L S ++
Sbjct: 191 GEVGNAAKMMLIVNMVQGSFMATIAEGL----TLAQVTGQSQQTLLDILNQGQLASIFLD 246
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 36/229 (15%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYN----------RTTSKVDETVERAKKEGDLPL 58
+IG GL MG+ +A+N+ ++G + ++ ++ E ++ D+
Sbjct: 6 KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIF 65
Query: 59 FGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERR 118
+ + P ++ KAG I+D + +T +
Sbjct: 66 TSLPNAGIVETVMNGPGGVLSACKAGT-----------------VIVDMSSVSPSSTLKM 108
Query: 119 EKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCV 177
K AE G+ Y+ VSGG +GA G ++M G S ++ I+ +L + G +
Sbjct: 109 AKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVI-------GKDI 161
Query: 178 TYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVF 226
+V G+G+ VK+++N + +M +AEA VL L E +Q +
Sbjct: 162 YHVGDTGAGDAVKIVNNLLLGCNMASLAEAL-VLGVKCGLKPETMQEII 209
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 45/221 (20%)
Query: 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDP- 64
Q +G GL MG +A N+ + G+P+ +Y + A KE F+D
Sbjct: 21 QSMPVGFIGLGNMGNPMAKNLMKHGYPLIIY--------DVFPDACKE-------FQDAG 65
Query: 65 ESFVNSI-----QKPRVIIMLVKAGAPVDETIKTLSAY---------MEKGDCIIDGGNE 110
E V+S + R+I ML +I + AY ++KG +ID
Sbjct: 66 EQVVSSPADVAEKADRIITML-------PTSINAIEAYSGANGILKKVKKGSLLIDSSTI 118
Query: 111 WYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQ 169
++ K + ++G +++ VSGG AR G + M GG + + +++L + +
Sbjct: 119 DPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSN 178
Query: 170 VPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 210
V Y G+G K+ +N + M AEA ++
Sbjct: 179 -------VVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNL 212
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 45/217 (20%)
Query: 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDP-ESFV 68
+G GL MG +A N+ + G+P+ +Y + A KE F+D E V
Sbjct: 3 VGFIGLGNMGNPMAKNLMKHGYPLIIY--------DVFPDACKE-------FQDAGEQVV 47
Query: 69 NSI-----QKPRVIIMLVKAGAPVDETIKTLSAY---------MEKGDCIIDGGNEWYEN 114
+S + R+I ML +I + AY ++KG +ID
Sbjct: 48 SSPADVAEKADRIITML-------PTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAV 100
Query: 115 TERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVAAQVPDS 173
++ K + ++G +++ VSGG AR G + M GG + + +++L + +
Sbjct: 101 SKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSN---- 156
Query: 174 GPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 210
V Y G+G K+ +N + M AEA ++
Sbjct: 157 ---VVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNL 190
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 78/201 (38%), Gaps = 19/201 (9%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
+I G G A + E G+ + V+NRT ++ L G E
Sbjct: 33 KITFLGTGSXGLPXARRLCEAGYALQVWNRTPARA----------ASLAALGATIHEQAR 82
Query: 69 NSIQKPRVIIMLVKAGAPVDETI--KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG 126
+ + +++ ++ GA V + + + ++A + G +D + + LG
Sbjct: 83 AAARDADIVVSXLENGAVVQDVLFAQGVAAAXKPGSLFLDXASITPREARDHAARLGALG 142
Query: 127 LLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSG 186
+ +L VSGG GA G ++ G A LLKV + T+V GSG
Sbjct: 143 IAHLDTPVSGGTVGAEQGTLVIXAGGKPADFERSLPLLKVFGR-------ATHVGPHGSG 195
Query: 187 NFVKMIHNGIEYGDMQLIAEA 207
K+ + I + +AEA
Sbjct: 196 QLTKLANQXIVGITIGAVAEA 216
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 28/206 (13%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFV 68
++G GL + G A+N+A G + V T V + +L G + E+
Sbjct: 5 KLGFIGLGIXGSPXAINLARAGHQLHVT--TIGPVAD---------ELLSLGAVNVETAR 53
Query: 69 NSIQKPRVIIMLVKAGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL 125
+ +I + V V++ + + +G I+D + T+R + + E
Sbjct: 54 QVTEFADIIFIXVPDTPQVEDVLFGEHGCAKTSLQGKTIVDXSSISPIETKRFAQRVNEX 113
Query: 126 GLLYLGMGVSGGEEGARHGP-SLMPGGS---FEAYKYIEDILLKVAAQVPDSGPCVTYVS 181
G YL VSGGE GAR G S+ GG F+ K + DIL G +T V
Sbjct: 114 GADYLDAPVSGGEIGAREGTLSIXVGGEQKVFDRVKPLFDIL----------GKNITLVG 163
Query: 182 KGGSGNFVKMIHNGIEYGDMQLIAEA 207
G G K+ + I +++ ++EA
Sbjct: 164 GNGDGQTCKVANQIIVALNIEAVSEA 189
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLP 57
+T G GL +MG +A N+ GF ++V+NR +K V ++ P
Sbjct: 1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSP 51
>pdb|1BBT|2 Chain 2, Methods Used In The Structure Determination Of Foot And
Mouth Disease Virus
pdb|1FOD|2 Chain 2, Structure Of A Major Immunogenic Site On Foot-And-Mouth
Disease Virus
pdb|1QQP|2 Chain 2, Foot-And-Mouth Disease Virus OLIGOSACCHARIDE RECEPTOR
COMPLEX
Length = 218
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 257 LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGF 316
L D++L T G T Q + ++ T + SGL+ V+A + FK+ F
Sbjct: 10 LEDRIL--TTRNGHTTSTTQSSVGVTYGYATAEDFVSGPNTSGLETRVVQAERFFKTHLF 67
Query: 317 GVQSNQAVDKQKLID--DVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKG 374
++ + + L++ + +Y S SYA N GWD+++ + + G
Sbjct: 68 DWVTSDSFGRCHLLELPTDHKGVYGSLTDSYAYMRN---------GWDVEVTAVGNQFNG 118
Query: 375 GCIIRAV 381
GC++ A+
Sbjct: 119 GCLLVAM 125
>pdb|4GH4|B Chain B, Crystal Structure Of Foot And Mouth Disease Virus A22
Serotype
Length = 207
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 259 DKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGV 318
D++L T G T Q + ++ T + SGL+ V+A + FK F
Sbjct: 1 DRLL--TTRNGHTTSTTQSSVGVTYGYSTQEDHVSGPNTSGLETRVVQAERFFKKHLFDW 58
Query: 319 QSNQA---VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGG 375
++A ++K +L D + +Y + S+A N GWD+++ + + GG
Sbjct: 59 TPDKAFGHLEKLELPTD-HKGVYGHLVDSFAYMRN---------GWDVEVSAVGNQFNGG 108
Query: 376 CIIRAV 381
C++ A+
Sbjct: 109 CLLVAM 114
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDE 45
+ G GL +MG +A N+ + G ++++NR+ K +E
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEE 39
>pdb|1ZBA|2 Chain 2, Foot-And-Mouth Disease Virus Serotype A1061 Complexed With
Oligosaccharide Receptor.
pdb|1ZBE|2 Chain 2, Foot-And Mouth Disease Virus Serotype A1061
Length = 218
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 17/138 (12%)
Query: 257 LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGF 316
L D++L T G T Q + ++ T + SGL+ V+A + FK F
Sbjct: 10 LEDRLL--TTRNGHTTSTTQSSVGVTYGYSTEEDHVAGPNTSGLETRVVQAERFFKKFLF 67
Query: 317 GVQSNQA---VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWK 373
+++ + K +L D ++ + SYA N GWD+++ + +
Sbjct: 68 DWTTDKPFGYLTKLELPTD-HHGVFGHLVDSYAYMRN---------GWDVEVSAVGNQFN 117
Query: 374 GGCIIRAVFLDRIKKAYD 391
GGC++ A+ + KA+D
Sbjct: 118 GGCLLVAMVPEW--KAFD 133
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 23 ALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82
AL + FP + T+ D+T ++ + L G DP ++S +P + ML++
Sbjct: 164 ALGQLRQRFPTLPFMALTATADDTT----RQDIVRLLGLNDPLIQISSFDRPNIRYMLME 219
Query: 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERR 118
P+D+ ++ + K I E+T R
Sbjct: 220 KFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAAR 255
>pdb|3OIY|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga
Maritima
pdb|3OIY|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga
Maritima
Length = 414
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 1 MVEGKQLTRIGLAGL--AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD--L 56
+V+GK T + G+ G AL +A KG ++ T + V +T+ER +K D +
Sbjct: 33 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKV 92
Query: 57 PLFGF 61
+FGF
Sbjct: 93 KIFGF 97
>pdb|3P4X|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga
Maritima
pdb|3P4X|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga
Maritima
Length = 413
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 1 MVEGKQLTRIGLAGL--AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD--L 56
+V+GK T + G+ G AL +A KG ++ T + V +T+ER +K D +
Sbjct: 32 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKV 91
Query: 57 PLFGF 61
+FGF
Sbjct: 92 KIFGF 96
>pdb|3P4Y|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga
Maritima - P2 Form
Length = 415
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 1 MVEGKQLTRIGLAGL--AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD--L 56
+V+GK T + G+ G AL +A KG ++ T + V +T+ER +K D +
Sbjct: 34 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKV 93
Query: 57 PLFGF 61
+FGF
Sbjct: 94 KIFGF 98
>pdb|4DDT|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 2
pdb|4DDU|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 1
pdb|4DDV|A Chain A, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDV|B Chain B, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDW|A Chain A, Thermotoga Maritima Reverse Gyrase, C-centered
Orthorhombic Form
pdb|4DDX|A Chain A, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
pdb|4DDX|B Chain B, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
Length = 1104
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 1 MVEGKQLTRIGLAGL--AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD--L 56
+V+GK T + G+ G AL +A KG ++ T + V +T+ER +K D +
Sbjct: 90 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKV 149
Query: 57 PLFGF 61
+FGF
Sbjct: 150 KIFGF 154
>pdb|1FMD|2 Chain 2, The Structure And Antigenicity Of A Type C Foot-And-Mouth
Disease Virus
pdb|1QGC|2 Chain 2, Structure Of The Complex Of An Fab Fragment Of A
Neutralizing Antibody With Foot And Mouth Disease Virus
Length = 218
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 13/127 (10%)
Query: 257 LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGF 316
L D++L T G T Q + ++ T S S L+ +A + FK F
Sbjct: 10 LEDRIL--TTRNGHTTSTTQSSVGVTFGYATAEDSTSGPNTSALETRVHQAERFFKMALF 67
Query: 317 GVQSNQAVDKQK--LIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKG 374
+Q ++ + +Y + SYA N GWD+++ + + G
Sbjct: 68 DWVPSQNFGHMHKVVLPHEPKGVYGGLVKSYAYMRN---------GWDVEVTAVGNQFNG 118
Query: 375 GCIIRAV 381
GC++ A+
Sbjct: 119 GCLLVAL 125
>pdb|3C5B|A Chain A, De Novo Model Of Bacteriophage Epsilon 15 Major Capsid
Protein Gp7
pdb|3C5B|B Chain B, De Novo Model Of Bacteriophage Epsilon 15 Major Capsid
Protein Gp7
pdb|3C5B|C Chain C, De Novo Model Of Bacteriophage Epsilon 15 Major Capsid
Protein Gp7
pdb|3C5B|D Chain D, De Novo Model Of Bacteriophage Epsilon 15 Major Capsid
Protein Gp7
pdb|3C5B|E Chain E, De Novo Model Of Bacteriophage Epsilon 15 Major Capsid
Protein Gp7
pdb|3C5B|F Chain F, De Novo Model Of Bacteriophage Epsilon 15 Major Capsid
Protein Gp7
pdb|3C5B|G Chain G, De Novo Model Of Bacteriophage Epsilon 15 Major Capsid
Protein Gp7
Length = 335
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 15/138 (10%)
Query: 284 AAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKIC 343
A P L RF + + A VF +GG G +N ++ ++ +Y +
Sbjct: 136 AEPEAFMGLAPRFNTLSTSKAASAENVFSAGGSG-STNTSIWFMSWGENTAHMIYPEGMV 194
Query: 344 SYAQGMNL------------IRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYD 391
+ Q +L RA E WD+ L R W+ I + + + K
Sbjct: 195 AGFQHEDLGDDLVSDGNGGQFRAYRDEFKWDIGLS--VRDWRSISRICNIDVTTLTKDAS 252
Query: 392 RNADLANLLVDPEFAKEI 409
ADL +++VD +A+++
Sbjct: 253 TGADLISMMVDAYYARDV 270
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 272 KWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSG 314
+ ++QA L A+ + LDAR LS + EE + A++VFK G
Sbjct: 250 RARLRQANRLFTAS---SGPLDARALSTIAEEDIRASRVFKGG 289
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 272 KWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSG 314
+ ++QA L A+ + LDAR LS + EE + A++VFK G
Sbjct: 257 RARLRQANRLFTAS---SGPLDARALSTIAEEDIRASRVFKGG 296
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 272 KWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSG 314
+ ++QA L A+ + LDAR LS + EE + A++VFK G
Sbjct: 257 RARLRQANRLFTAS---SGPLDARALSTIAEEDIRASRVFKGG 296
>pdb|1I21|A Chain A, Crystal Structure Of Yeast Gna1
pdb|1I21|B Chain B, Crystal Structure Of Yeast Gna1
pdb|1I21|M Chain M, Crystal Structure Of Yeast Gna1
pdb|1I21|N Chain N, Crystal Structure Of Yeast Gna1
pdb|1I21|X Chain X, Crystal Structure Of Yeast Gna1
pdb|1I21|Y Chain Y, Crystal Structure Of Yeast Gna1
Length = 159
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 197 EYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKG 232
E GD++ + E VL +VG +T E + WN+
Sbjct: 13 EEGDLEQVTETLKVLTTVGTITPESFCKLIKYWNEA 48
>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl
Compounds By Diketoreductase
pdb|4E12|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl
Compounds By Diketoreductase
pdb|4E13|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl
Compounds By Diketoreductase
Length = 283
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49
+T + + G V+G +A A GF ++ Y+ T +D +R
Sbjct: 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKR 46
>pdb|1I12|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
Length = 160
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 196 IEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKG 232
+E GD++ + E VL +VG +T E + WN+
Sbjct: 13 MEEGDLEQVTETLKVLTTVGTITPESFCKLIKYWNEA 49
>pdb|1I1D|A Chain A, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|B Chain B, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|C Chain C, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|D Chain D, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
Length = 161
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 196 IEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNK 231
+E GD++ + E VL +VG +T E + WN+
Sbjct: 14 MEEGDLEQVTETLKVLTTVGTITPESFCKLIKYWNE 49
>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site.
pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site
Length = 879
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 176 CVTYVSKGG----SGNFVKMIHNGIEY-GDMQLIAEAYDVLKSVGKLTNEELQNVFTEWN 230
++Y+ G + N K + + I+Y GD L+++ ++ + +L ++E N +EW
Sbjct: 787 VLSYIESGQFSPENPNEFKPLVDSIKYHGDYYLVSDDFESYLATHELVDQEFHNQRSEWL 846
Query: 231 KGELLSF 237
K +LS
Sbjct: 847 KKSVLSL 853
>pdb|1K77|A Chain A, Crystal Structure Of Ec1530, A Putative Oxygenase From
Escherichia Coli
Length = 260
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 379 RAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA 438
RAVF+D I+ A DR A ++ + + + LAI ++ + L
Sbjct: 119 RAVFIDNIRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQALAIVEEVARDNVFIQL- 177
Query: 439 YFDSYRRERLPANLVQAQRDYFGAHTYERI 468
D++ +++ NL RDY G + + +I
Sbjct: 178 --DTFHAQKVDGNLTHLIRDYAGKYAHVQI 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,152,791
Number of Sequences: 62578
Number of extensions: 590360
Number of successful extensions: 1540
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1459
Number of HSP's gapped (non-prelim): 48
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)